Query 043317
Match_columns 700
No_of_seqs 766 out of 5118
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.9E-66 1.1E-70 609.9 41.4 542 37-629 68-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.3E-61 1.2E-65 567.1 40.6 515 61-626 68-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1E-43 2.2E-48 340.1 -15.1 473 36-622 43-561 (565)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-39 3.9E-44 324.6 10.4 392 137-601 54-451 (873)
5 KOG4194 Membrane glycoprotein 100.0 4E-40 8.8E-45 329.2 2.8 393 113-575 53-449 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 3.3E-40 7.2E-45 316.0 -11.1 477 85-624 43-540 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.5E-37 3.2E-42 327.4 -5.7 472 30-600 13-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.9E-36 4.2E-41 319.0 -4.5 484 42-624 2-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 8E-35 1.7E-39 293.2 -3.6 365 108-597 28-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.9E-34 4E-39 290.6 -3.3 365 35-412 4-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.5E-27 3.3E-32 229.1 -2.6 293 116-413 50-358 (498)
12 PLN03210 Resistant to P. syrin 99.9 9E-23 1.9E-27 241.6 28.2 308 113-436 590-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 7.8E-26 1.7E-30 217.5 1.4 429 139-599 50-498 (498)
14 PLN03210 Resistant to P. syrin 99.9 7.9E-23 1.7E-27 242.1 26.2 340 151-576 549-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 7.9E-22 1.7E-26 216.3 17.2 80 519-607 384-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.9E-21 6.3E-26 211.9 17.9 264 113-445 202-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-19 3.3E-24 199.9 12.6 34 210-246 200-233 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.8E-19 3.9E-24 199.4 11.8 246 113-390 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.9E-20 6.3E-25 191.9 2.8 279 237-601 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 2E-19 4.4E-24 185.6 5.8 207 213-438 2-234 (319)
21 KOG0617 Ras suppressor protein 99.7 3.9E-19 8.5E-24 151.9 -4.4 185 350-607 29-217 (264)
22 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.4E-23 149.2 -4.8 169 370-611 26-195 (264)
23 PLN03150 hypothetical protein; 99.6 4.5E-15 9.8E-20 164.3 10.0 118 518-635 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 6.9E-14 1.5E-18 141.9 -4.2 195 305-576 74-271 (722)
25 COG4886 Leucine-rich repeat (L 99.3 7.1E-12 1.5E-16 133.1 9.2 198 334-607 97-295 (394)
26 PLN03150 hypothetical protein; 99.3 7E-12 1.5E-16 139.0 8.9 90 517-606 442-532 (623)
27 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.3E-16 129.6 7.7 103 306-411 116-219 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 4.1E-13 9E-18 136.3 -4.9 213 213-436 54-271 (722)
29 KOG1259 Nischarin, modulator o 99.1 8.4E-12 1.8E-16 117.0 0.4 208 322-605 206-415 (490)
30 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.9E-16 121.8 0.5 39 257-295 300-339 (505)
31 KOG3207 Beta-tubulin folding c 99.1 3.3E-11 7.2E-16 119.0 2.4 211 110-344 119-340 (505)
32 KOG1909 Ran GTPase-activating 99.1 2.1E-11 4.5E-16 117.3 0.9 247 180-438 26-311 (382)
33 KOG1909 Ran GTPase-activating 99.0 7E-11 1.5E-15 113.7 2.5 246 157-414 27-311 (382)
34 KOG1259 Nischarin, modulator o 99.0 4.3E-11 9.3E-16 112.3 0.7 135 302-441 280-415 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.5E-10 3.3E-15 104.7 3.8 127 36-168 17-148 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 5.2E-10 1.1E-14 101.3 5.7 81 352-432 62-147 (175)
37 PF13855 LRR_8: Leucine rich r 99.0 3.8E-10 8.2E-15 83.9 2.9 60 542-601 2-61 (61)
38 KOG0531 Protein phosphatase 1, 98.9 1.2E-10 2.6E-15 123.7 -0.7 85 519-606 234-322 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 7.7E-10 1.7E-14 82.2 3.1 61 517-577 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 5.6E-10 1.2E-14 118.6 -1.6 217 306-603 72-291 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 1.3E-08 2.7E-13 115.7 7.6 129 112-244 523-653 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 2.6E-08 5.6E-13 113.1 9.2 274 258-574 545-828 (889)
43 KOG4579 Leucine-rich repeat (L 98.6 3.7E-09 8E-14 87.9 -2.2 89 517-608 77-165 (177)
44 KOG2120 SCF ubiquitin ligase, 98.5 5.5E-09 1.2E-13 98.4 -2.7 157 185-341 186-349 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 4.7E-09 1E-13 98.9 -4.3 178 39-219 186-373 (419)
46 KOG1859 Leucine-rich repeat pr 98.3 2.4E-08 5.2E-13 105.0 -4.6 127 306-438 164-292 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.3 2.7E-07 5.9E-12 86.1 1.9 36 36-71 28-67 (388)
48 KOG1859 Leucine-rich repeat pr 98.3 3.8E-08 8.2E-13 103.6 -4.2 127 210-343 165-292 (1096)
49 KOG2982 Uncharacterized conser 98.2 4.4E-07 9.5E-12 85.8 2.3 216 34-272 41-263 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.1 6.4E-07 1.4E-11 83.6 1.0 183 256-438 90-316 (388)
51 KOG2982 Uncharacterized conser 98.0 9.5E-07 2.1E-11 83.6 -0.3 136 36-173 69-212 (418)
52 PF12799 LRR_4: Leucine Rich r 98.0 4.3E-06 9.3E-11 56.6 2.9 36 542-578 2-37 (44)
53 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.3E-10 54.7 3.9 39 113-152 2-40 (44)
54 KOG4579 Leucine-rich repeat (L 97.9 4.7E-07 1E-11 75.6 -3.5 38 376-414 99-136 (177)
55 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 5E-10 70.4 6.0 108 37-147 41-152 (233)
56 KOG3665 ZYG-1-like serine/thre 97.8 6E-06 1.3E-10 91.7 1.9 145 19-166 122-281 (699)
57 KOG4341 F-box protein containi 97.8 9.4E-07 2E-11 87.7 -4.5 107 38-144 138-251 (483)
58 PRK15386 type III secretion pr 97.8 8.4E-05 1.8E-09 76.1 8.8 28 113-146 95-123 (426)
59 PRK15386 type III secretion pr 97.7 0.00013 2.7E-09 74.8 9.0 76 350-437 48-124 (426)
60 PF13306 LRR_5: Leucine rich r 97.6 0.00017 3.8E-09 62.9 7.4 122 33-162 7-128 (129)
61 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 66.0 5.5 85 351-435 61-150 (233)
62 KOG3665 ZYG-1-like serine/thre 97.5 5E-05 1.1E-09 84.5 3.0 106 113-221 123-232 (699)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00048 1E-08 60.1 7.9 59 278-338 8-66 (129)
64 KOG4341 F-box protein containi 97.4 1.3E-05 2.7E-10 79.9 -2.6 274 20-293 139-437 (483)
65 KOG2739 Leucine-rich acidic nu 97.0 0.0002 4.4E-09 67.4 0.7 113 30-145 35-153 (260)
66 KOG1947 Leucine rich repeat pr 96.8 0.00024 5.3E-09 77.8 -1.1 35 403-437 403-439 (482)
67 KOG2739 Leucine-rich acidic nu 96.7 0.00095 2.1E-08 63.0 2.7 113 54-169 35-152 (260)
68 KOG2123 Uncharacterized conser 96.6 0.00018 3.9E-09 68.0 -3.2 83 186-273 21-103 (388)
69 KOG1947 Leucine rich repeat pr 96.0 0.002 4.3E-08 70.6 0.4 111 37-147 187-307 (482)
70 KOG2123 Uncharacterized conser 96.0 0.00031 6.7E-09 66.4 -5.1 87 281-371 18-105 (388)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0035 7.5E-08 35.1 0.6 18 567-585 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0069 1.5E-07 33.9 0.8 21 39-60 1-21 (22)
73 PF13504 LRR_7: Leucine rich r 93.2 0.06 1.3E-06 27.9 1.4 15 113-127 2-16 (17)
74 KOG0473 Leucine-rich repeat pr 92.8 0.0045 9.7E-08 57.2 -5.3 84 516-602 41-124 (326)
75 KOG4308 LRR-containing protein 92.2 0.0014 3.1E-08 69.9 -11.0 85 234-318 88-184 (478)
76 KOG4308 LRR-containing protein 92.0 0.0025 5.3E-08 68.1 -9.5 37 354-390 262-303 (478)
77 smart00369 LRR_TYP Leucine-ric 91.8 0.13 2.9E-06 30.0 1.9 16 565-580 2-17 (26)
78 smart00370 LRR Leucine-rich re 91.8 0.13 2.9E-06 30.0 1.9 16 565-580 2-17 (26)
79 smart00369 LRR_TYP Leucine-ric 90.6 0.26 5.7E-06 28.7 2.3 16 38-53 2-17 (26)
80 smart00370 LRR Leucine-rich re 90.6 0.26 5.7E-06 28.7 2.3 16 38-53 2-17 (26)
81 KOG0473 Leucine-rich repeat pr 87.5 0.031 6.8E-07 51.8 -4.7 61 516-578 64-124 (326)
82 KOG3864 Uncharacterized conser 87.1 0.069 1.5E-06 48.7 -2.7 35 39-73 102-136 (221)
83 KOG3864 Uncharacterized conser 86.6 0.14 2.9E-06 46.9 -1.2 81 259-339 102-185 (221)
84 PF13516 LRR_6: Leucine Rich r 83.6 0.36 7.8E-06 27.5 0.1 13 402-414 3-15 (24)
85 smart00365 LRR_SD22 Leucine-ri 78.6 1.7 3.7E-05 25.4 1.7 14 565-578 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 68.7 3.2 6.8E-05 24.2 1.2 17 113-129 3-19 (26)
87 smart00368 LRR_RI Leucine rich 66.5 4.6 0.0001 24.0 1.7 14 565-578 2-15 (28)
88 KOG4242 Predicted myosin-I-bin 60.1 37 0.0008 35.8 7.7 61 378-438 414-481 (553)
89 TIGR00864 PCC polycystin catio 52.8 5.8 0.00012 50.8 0.8 32 571-602 1-32 (2740)
90 KOG3763 mRNA export factor TAP 49.2 14 0.00029 39.7 2.7 35 135-170 218-254 (585)
91 PF07204 Orthoreo_P10: Orthore 41.2 29 0.00062 27.3 2.7 30 658-687 40-69 (98)
92 KOG3763 mRNA export factor TAP 39.7 20 0.00043 38.5 2.2 13 307-319 271-283 (585)
93 smart00367 LRR_CC Leucine-rich 32.8 28 0.00062 20.0 1.3 12 87-98 2-13 (26)
94 PRK00523 hypothetical protein; 30.7 35 0.00075 25.6 1.6 19 673-691 16-34 (72)
95 TIGR00864 PCC polycystin catio 29.4 30 0.00066 44.8 1.9 32 523-554 1-32 (2740)
96 PF01102 Glycophorin_A: Glycop 28.1 27 0.00059 29.5 0.8 9 681-689 86-94 (122)
97 PF06716 DUF1201: Protein of u 28.0 37 0.00081 22.5 1.3 23 662-684 8-30 (54)
98 PF15179 Myc_target_1: Myc tar 26.2 35 0.00077 30.6 1.2 26 658-683 22-47 (197)
99 PRK01844 hypothetical protein; 25.7 47 0.001 24.9 1.6 17 675-691 17-33 (72)
100 PF15102 TMEM154: TMEM154 prot 24.5 16 0.00034 31.7 -1.2 16 673-688 72-87 (146)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.9e-66 Score=609.92 Aligned_cols=542 Identities=34% Similarity=0.503 Sum_probs=439.2
Q ss_pred CCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccE
Q 043317 37 LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV 116 (700)
Q Consensus 37 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 116 (700)
..+++.|+|++|.+++.++..|..+++|++|+|++|++.+.+|...+..+++|++|++++|++.+.++. ..+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCE
Confidence 357788888888888877778888888888888888887777766666788888888888777665554 34567888
Q ss_pred EEeeCCCC-CCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc
Q 043317 117 LELANCSL-NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN 195 (700)
Q Consensus 117 L~L~~n~l-~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 195 (700)
|++++|.+ +.+|..+..+++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 88888888 56777788888888888888888777777664 78888888888888887778888888888888888888
Q ss_pred CccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc
Q 043317 196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF 275 (700)
Q Consensus 196 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 275 (700)
+.+.+|..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..|
T Consensus 224 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 224 LSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCC
Confidence 87777777765 7788888888888887788888888888888888888877777665 457888888888888887777
Q ss_pred cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCC
Q 043317 276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT 355 (700)
Q Consensus 276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 355 (700)
..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..++.+.+
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 77778888888888888888777877888888888888888888778888888888888888888888778888888888
Q ss_pred CCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCC
Q 043317 356 LKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434 (700)
Q Consensus 356 L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 434 (700)
|+.|++++|.+.+..+..+ .+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 8888888888887777766 778888888888888877888888888888888888888887777777888888888888
Q ss_pred CccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCc
Q 043317 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGS 514 (700)
Q Consensus 435 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 514 (700)
|++.+.+|..+.. ..++.+++.++.+....+.. ..
T Consensus 462 n~~~~~~p~~~~~---~~L~~L~ls~n~l~~~~~~~------------------------------------------~~ 496 (968)
T PLN00113 462 NKFFGGLPDSFGS---KRLENLDLSRNQFSGAVPRK------------------------------------------LG 496 (968)
T ss_pred ceeeeecCccccc---ccceEEECcCCccCCccChh------------------------------------------hh
Confidence 8887777765432 12333444444333221100 12
Q ss_pred cccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF 594 (700)
Q Consensus 515 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 594 (700)
.++.|+.|+|++|.+.+.+|..++.+++|++|+|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|+++
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcCcccCCCCCCCCCcCCCccCCCcCCcCcC
Q 043317 595 NVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPT 629 (700)
Q Consensus 595 ~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~ 629 (700)
++++|+++|.+|..+++.++...++.||+.+||.+
T Consensus 577 ~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 577 NISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-61 Score=567.09 Aligned_cols=515 Identities=29% Similarity=0.426 Sum_probs=461.0
Q ss_pred CCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCC-CCcChhhcCCCCCCE
Q 043317 61 LTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL-NVVPTFLLHQYDLKY 139 (700)
Q Consensus 61 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~p~~l~~~~~L~~ 139 (700)
..+++.|++++|.+++.++ ..+..+++|++|++++|++.+.++...+..+.+|++|++++|++ +.+|. ..+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 4589999999999998776 57999999999999999988788877777899999999999999 56775 45789999
Q ss_pred EEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCC
Q 043317 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNN 219 (700)
Q Consensus 140 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 219 (700)
|++++|.+.+.+|..+ .++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|
T Consensus 145 L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n 222 (968)
T PLN00113 145 LDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYN 222 (968)
T ss_pred EECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCC
Confidence 9999999998889876 49999999999999999999999999999999999999999999988876 899999999999
Q ss_pred cCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCccccccc
Q 043317 220 HFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE 299 (700)
Q Consensus 220 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 299 (700)
.+.+.+|..++++++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 9999999999999999999999999998888775 679999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCC
Q 043317 300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSS 378 (700)
Q Consensus 300 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~ 378 (700)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..+..+ .+++
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888777 7899
Q ss_pred CcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317 379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458 (700)
Q Consensus 379 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 458 (700)
|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..++.+ +.+++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~L 459 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL--QMLSL 459 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC--cEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999888776655432 23333
Q ss_pred cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538 (700)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 538 (700)
.++.+....+ .....++|+.||+++|++++.+|..+.
T Consensus 460 ~~n~~~~~~p-------------------------------------------~~~~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 460 ARNKFFGGLP-------------------------------------------DSFGSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred cCceeeeecC-------------------------------------------cccccccceEEECcCCccCCccChhhh
Confidence 3333221111 001136789999999999999999999
Q ss_pred CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC-CCCCCcCCC
Q 043317 539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFDES 617 (700)
Q Consensus 539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~ 617 (700)
.+++|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|.. ..+..+...
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999973 334444445
Q ss_pred ccCCCcCCc
Q 043317 618 SYRGNLYLC 626 (700)
Q Consensus 618 ~~~gn~~lc 626 (700)
...+|...+
T Consensus 577 ~ls~N~l~~ 585 (968)
T PLN00113 577 NISHNHLHG 585 (968)
T ss_pred eccCCccee
Confidence 556666544
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-43 Score=340.08 Aligned_cols=473 Identities=26% Similarity=0.336 Sum_probs=282.8
Q ss_pred CCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCccc
Q 043317 36 YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK 115 (700)
Q Consensus 36 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 115 (700)
.-..|+.|++++|.++. +...+.++..|.+|++++|++. ..| .+++.+.+++.++.++|... .++. .+....+|+
T Consensus 43 ~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~ 117 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLV 117 (565)
T ss_pred hhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhh
Confidence 44567777777777773 3445677777777777777776 445 34566666666666655432 2222 244445556
Q ss_pred EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc
Q 043317 116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN 195 (700)
Q Consensus 116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 195 (700)
.++.+.|.+..+|..++.+..+..++..+|+++ ..|++++ .+.++..+++.+|+++...|..+. ++.|+++|.-.|.
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL 194 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence 666666666666666666666666666666665 5555544 555555555555555433222222 4455555555444
Q ss_pred CccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc
Q 043317 196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF 275 (700)
Q Consensus 196 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 275 (700)
+. .+|++++. +.+|..|++..|++. ..| .|.++..|+++.++.|++ +.+|....+.++++..|
T Consensus 195 L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vL------------ 257 (565)
T KOG0472|consen 195 LE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVL------------ 257 (565)
T ss_pred hh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceee------------
Confidence 43 44554444 444555555555544 333 444555555555555544 23444444444444444
Q ss_pred cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccc---------
Q 043317 276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI--------- 346 (700)
Q Consensus 276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------- 346 (700)
|+..|+++ ..|+.++-+++|++||+|+|.++ ..|..++++ .|+.|.+.+|.+...-
T Consensus 258 ------------DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 258 ------------DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred ------------eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHH
Confidence 44444444 33444444444555555555544 233344444 4445544444443110
Q ss_pred --------------------------------hhhccCCCCCCEEEccCccCcccCCCccCC---CCCcEEEccCCcCcc
Q 043317 347 --------------------------------PVQLLNHRTLKLLSVSENYLSGSMTSSFNL---SSLKHLYVQKNALSG 391 (700)
Q Consensus 347 --------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l---~~L~~L~l~~n~l~~ 391 (700)
........+.+.|++++-+++.++.+.|.. .-....+++.|++.
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~- 401 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC- 401 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-
Confidence 011123345667777777777666666622 22666777777776
Q ss_pred CcchhhhCCCCcc-EEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCc
Q 043317 392 PIPDMLFRSSKLM-TLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG 470 (700)
Q Consensus 392 ~~~~~~~~~~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 470 (700)
.+|..+..+..+. .+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+
T Consensus 402 elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l---------------------- 457 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL---------------------- 457 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh----------------------
Confidence 5666655554443 3344444444 67777777777777777777665 556555443
Q ss_pred ccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC
Q 043317 471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH 550 (700)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 550 (700)
..|+.||+|.|++. ..|..+..+..++.+-.++
T Consensus 458 ----------------------------------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 458 ----------------------------------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred ----------------------------------------------hhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 45888999999998 8898888888888888888
Q ss_pred ccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC-CCCCCCcCCCccCCC
Q 043317 551 NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDESSYRGN 622 (700)
Q Consensus 551 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gn 622 (700)
|++....|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|+|. .+|. ...-.|....+|.++
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence 9999888888999999999999999998 67888999999999999999998 3222 333334444445443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-39 Score=324.59 Aligned_cols=392 Identities=21% Similarity=0.212 Sum_probs=201.4
Q ss_pred CCEEEccCCCCCccCchHHhh--cCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEE
Q 043317 137 LKYLDLSLNNLVGDFPSWMLQ--NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL 214 (700)
Q Consensus 137 L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 214 (700)
-+.||.+++.+. .+...... -.+.-+.|++++|.+...-+..+.++++|+.+.+..|.++ .+|..... ..+++.|
T Consensus 54 ~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L 130 (873)
T KOG4194|consen 54 TRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKL 130 (873)
T ss_pred ceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEE
Confidence 455677777664 22111000 1123344555555555444444444555555555555444 44433222 2334555
Q ss_pred EccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcc
Q 043317 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKF 294 (700)
Q Consensus 215 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 294 (700)
+|.+|.|+..-.+.+..++.|+.||||.| .++......|..-.++++|+|++|+|
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN-------------------------~is~i~~~sfp~~~ni~~L~La~N~I 185 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRN-------------------------LISEIPKPSFPAKVNIKKLNLASNRI 185 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhc-------------------------hhhcccCCCCCCCCCceEEeeccccc
Confidence 55555444444444444444555555554 44444444444444455555555555
Q ss_pred cccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc
Q 043317 295 SGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF 374 (700)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 374 (700)
+......|..+.+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.--..|.++++|+.|.+..|.|.....+.|
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 54444444444555555555555554444444445555555555555442223344455555555555555555444444
Q ss_pred -CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhh
Q 043317 375 -NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453 (700)
Q Consensus 375 -~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 453 (700)
.+.++++|+|..|+++..-.+++.++++|+.|++++|.|..+-++++..+++|+.|+|++|+++..-+..|..+..+
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-- 343 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-- 343 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh--
Confidence 45555555555555544444455555555555555555554444455555555555555555544333333333211
Q ss_pred hhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccC
Q 043317 454 ENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV 533 (700)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 533 (700)
+.+.+.+|.+..+.. .....+++|++|||++|.+++.+
T Consensus 344 e~LnLs~Nsi~~l~e------------------------------------------~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAE------------------------------------------GAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhhcccccchHHHHh------------------------------------------hHHHHhhhhhhhcCcCCeEEEEE
Confidence 111122222111110 00122467777888888877654
Q ss_pred C---ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317 534 P---SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 601 (700)
Q Consensus 534 p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 601 (700)
. ..|.++++|+.|.|.+|++..+...+|.++.+||.|||.+|.|..+-|.+|..+ .|+.|-+..-.+
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 3 346677788888888888876666777888888888888888877777777777 777776655443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-40 Score=329.22 Aligned_cols=393 Identities=20% Similarity=0.183 Sum_probs=337.1
Q ss_pred cccEEEeeCCCCCCcChh-hcC-C-CCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317 113 QLKVLELANCSLNVVPTF-LLH-Q-YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~~-l~~-~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 189 (700)
.-+.||++++.+..+... +.. + ..-+.||+++|+++ .+....|.++++|+++++.+|.++ .+|.......+++.|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 467789999988554211 111 1 24567999999998 555556679999999999999987 667777777889999
Q ss_pred eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269 (700)
Q Consensus 190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 269 (700)
+|.+|.+. ++...-.+.++.|+.|||+.|.|+...-..|..-.++++|+|++|.|+...... |.++.+|..|.|++|+
T Consensus 131 ~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 131 DLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNR 208 (873)
T ss_pred eeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeeecccCc
Confidence 99999987 555444455889999999999999766667777788999999999998654444 5778999999999999
Q ss_pred cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317 270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349 (700)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 349 (700)
++...+..|.++++|+.|+|..|++.-.-.-.|.++++|+.|.+..|.+...-..+|..+.++++|+|+.|+++..-..+
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 99999999999999999999999998554567899999999999999999888889999999999999999999888888
Q ss_pred ccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCC
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLG 428 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 428 (700)
+.++.+|+.|++|+|.|..+..+.+ .+++|++|+|++|+++...++.|..+..|++|+|+.|++...-..+|..+++|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 9999999999999999999988888 789999999999999988889999999999999999999977788999999999
Q ss_pred EEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc
Q 043317 429 MMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY 508 (700)
Q Consensus 429 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 508 (700)
+|||++|.++..+.+.-.-
T Consensus 369 ~LdLr~N~ls~~IEDaa~~------------------------------------------------------------- 387 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVA------------------------------------------------------------- 387 (873)
T ss_pred hhcCcCCeEEEEEecchhh-------------------------------------------------------------
Confidence 9999999998654431100
Q ss_pred ccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317 509 ELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575 (700)
Q Consensus 509 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 575 (700)
...+++|+.|+|.+|++..+...+|.++.+|++|||.+|.|..+.|.+|..+ .|+.|.++.-
T Consensus 388 ----f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 388 ----FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred ----hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 0236889999999999998888899999999999999999999999999999 8999887643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-40 Score=316.04 Aligned_cols=477 Identities=25% Similarity=0.322 Sum_probs=323.7
Q ss_pred CCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCE
Q 043317 85 NHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEV 164 (700)
Q Consensus 85 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 164 (700)
.-..|+.+++++|...... +...++..|.+|++++|++..+|+.++.+..++.++.++|+++ .+|..+. .+.++..
T Consensus 43 ~qv~l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l~~ 118 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIG-SLISLVK 118 (565)
T ss_pred hhcchhhhhhccCchhhcc--HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHh-hhhhhhh
Confidence 3444555555555432221 1345555666666666666666666666666666666666666 6666654 5666666
Q ss_pred EEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCcc
Q 043317 165 LFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN 244 (700)
Q Consensus 165 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 244 (700)
++.++|.+. .++..++.+..++.++..+|+++ ..|++++. +.++..+++.+|+++...|. .-+++.|+.||.-.|-
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNL 194 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhh
Confidence 666666665 44555666666666666666665 56666665 55667777777777643333 3337777777777666
Q ss_pred CCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcch
Q 043317 245 FSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH 324 (700)
Q Consensus 245 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 324 (700)
+ +.+|... +++.+|.-|++.+|++.... .|.++..|+++++..|.+.-...+...+++++..||++.|+++ ..|+
T Consensus 195 L-~tlP~~l-g~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd 269 (565)
T KOG0472|consen 195 L-ETLPPEL-GGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD 269 (565)
T ss_pred h-hcCChhh-cchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch
Confidence 6 3455554 45677777777777765432 6667777788888888777333334447888888888888888 6788
Q ss_pred hhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccC------CCCCcEE----EccCCc---C-c
Q 043317 325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN------LSSLKHL----YVQKNA---L-S 390 (700)
Q Consensus 325 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------l~~L~~L----~l~~n~---l-~ 390 (700)
.++-+.+|+.||+++|.|+ ..|..++++ .|+.|.+.+|.+..+-.+... ++.|+.= -++.-+ - .
T Consensus 270 e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 8888888888888888887 567778888 888888888877644332221 1111110 001000 0 0
Q ss_pred cCcch----hhhCCCCccEEECcCCcccccCChhhhccCC---CCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317 391 GPIPD----MLFRSSKLMTLDLRGNNLEGQIPDQICQLRR---LGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL 463 (700)
Q Consensus 391 ~~~~~----~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 463 (700)
...|. ......+.+.|++++-+++ .+|+....... ...++++.|++. ++|..+..+..+. ..+.++.+.+
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv-T~l~lsnn~i 424 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV-TDLVLSNNKI 424 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH-HHHHhhcCcc
Confidence 01111 1223457888999999998 66766554444 788999999997 7887766654432 2233344444
Q ss_pred cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC
Q 043317 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI 543 (700)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 543 (700)
.+.|. ..+.++.|+.|+|++|-+. .+|.+++.+..|
T Consensus 425 sfv~~-------------------------------------------~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L 460 (565)
T KOG0472|consen 425 SFVPL-------------------------------------------ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL 460 (565)
T ss_pred ccchH-------------------------------------------HHHhhhcceeeecccchhh-hcchhhhhhhhh
Confidence 33321 0133578899999999998 889999999999
Q ss_pred cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCc
Q 043317 544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNL 623 (700)
Q Consensus 544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~ 623 (700)
+.||+|+|++. .+|..+..+..+|.+-.++|++....|+.+.++.+|..||+.+|.+...+|..+...++......|||
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 99999999999 79999999999999999999999888888999999999999999999888877777777776677765
Q ss_pred C
Q 043317 624 Y 624 (700)
Q Consensus 624 ~ 624 (700)
.
T Consensus 540 f 540 (565)
T KOG0472|consen 540 F 540 (565)
T ss_pred c
Confidence 4
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-37 Score=327.36 Aligned_cols=472 Identities=26% Similarity=0.292 Sum_probs=333.3
Q ss_pred CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317 30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL 109 (700)
Q Consensus 30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 109 (700)
+|..+..-..++.|++++|.+....-+.+.+.-+|+.||+++|++. ..| ..+..+++|+.|.++.| .+..++ .+..
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n-~i~~vp-~s~~ 88 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRN-YIRSVP-SSCS 88 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchh-hHhhCc-hhhh
Confidence 4444444444677777777665444445555566777777777775 455 34666777777777654 334444 2456
Q ss_pred CCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317 110 PTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 189 (700)
++.+|+++.|.+|.+..+|..+..+++|++||++.|.+. .+|..+. .++.++.+..++|...... +... ++.+
T Consensus 89 ~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~l----g~~~-ik~~ 161 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRL----GQTS-IKKL 161 (1081)
T ss_pred hhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhh----cccc-chhh
Confidence 677888888888888888888888888888888888886 7787765 7778888888888322111 1221 7778
Q ss_pred eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269 (700)
Q Consensus 190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 269 (700)
++..|.+.+.++.++.. ++. .|+|.+|.+. -..+..+.+|+.+....|+++... -.-++++.|+.++|.
T Consensus 162 ~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCc
Confidence 88888877777776654 333 5888888876 224567778888888888876422 125788888888888
Q ss_pred cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317 270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349 (700)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 349 (700)
+...... ..-.+|++++++.|++++ +|+++..+.+|+.++..+|+++ .+|..+....+|+.|.+.+|.+. .+|..
T Consensus 231 l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~ 305 (1081)
T KOG0618|consen 231 LTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPF 305 (1081)
T ss_pred ceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCc
Confidence 8733322 223578888888888884 4588888888888888888886 67777777888888888888887 56666
Q ss_pred ccCCCCCCEEEccCccCcccCCCcc-C-CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCC
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSF-N-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL 427 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~-~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L 427 (700)
....+.|++|+|..|++...++..+ . ..+|+.++.+.|++.......=..++.|+.|.+.+|.++...-..+.+..+|
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 7778888888888888887776555 2 2347777778787763221122235678888888888887776777888888
Q ss_pred CEEecCCCccCCCCCc-hhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecc
Q 043317 428 GMMDLSHNRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKN 506 (700)
Q Consensus 428 ~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 506 (700)
++|+|++|++. .+|. ++.+
T Consensus 386 KVLhLsyNrL~-~fpas~~~k----------------------------------------------------------- 405 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKLRK----------------------------------------------------------- 405 (1081)
T ss_pred eeeeecccccc-cCCHHHHhc-----------------------------------------------------------
Confidence 88888888886 4443 3333
Q ss_pred ccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCccccc
Q 043317 507 RYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLI 586 (700)
Q Consensus 507 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 586 (700)
+..|+.|+||+|.++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+|+...-..-.
T Consensus 406 ---------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 406 ---------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred ---------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 355677888888887 67788888888888888888887 566 678888888888888888744332222
Q ss_pred CCCCCCeEeccCCc
Q 043317 587 ELNFLSNFNVSYNN 600 (700)
Q Consensus 587 ~l~~L~~L~ls~N~ 600 (700)
.-+.|++||+++|.
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 23678888888886
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=319.03 Aligned_cols=484 Identities=26% Similarity=0.315 Sum_probs=372.7
Q ss_pred EEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeC
Q 043317 42 VLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN 121 (700)
Q Consensus 42 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 121 (700)
.+|.|.+++. .+|..+-.-..++.|+++.|-+- ..|.....+.-+|+.||++.|. ....+. .+..+.+|+.|+++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~-~~~fp~-~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQ-ISSFPI-QITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccc-cccCCc-hhhhHHHHhhcccch
Confidence 4678888887 56666656666999999999876 4455566677779999998654 333443 456677899999999
Q ss_pred CCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccC
Q 043317 122 CSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLP 201 (700)
Q Consensus 122 n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 201 (700)
|-+..+|....++.+|+++.|.+|.+. ..|..+- .+++|+.|+++.|.+. .+|..+..+..++.+..++|..+..++
T Consensus 78 n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 78 NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred hhHhhCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 999999988889999999999999987 8888874 8899999999999886 677778888888888888883332222
Q ss_pred hhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCC
Q 043317 202 QDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNL 281 (700)
Q Consensus 202 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 281 (700)
+ ..++.+++..|.+.+.++..+..++. .|+|.+|.+. .. ....+++|+.+....|++..... .-
T Consensus 155 ----~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~----~g 218 (1081)
T KOG0618|consen 155 ----Q--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSELEI----SG 218 (1081)
T ss_pred ----c--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceEEe----cC
Confidence 2 23778888888888888887777777 7999999886 22 23568899999999988865432 34
Q ss_pred CCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317 282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 361 (700)
++++.|+.++|.++...+. ....+|+++|+++|+++ .+|+|++.+.+|+.++..+|+++ .+|..+....+|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 7889999999998843332 23468999999999998 56699999999999999999996 78888888899999999
Q ss_pred cCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhC-CC-CccEEECcCCcccccCChhhhccCCCCEEecCCCccCC
Q 043317 362 SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFR-SS-KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNG 439 (700)
Q Consensus 362 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 439 (700)
.+|.++.+++..-+..+|++|+|..|++. ..|+.+.. .. .|..|+.+.|++....-..=...+.|+.|.+.+|.++.
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 99999887776667889999999999987 45554433 33 36777788888763221122345678888888888874
Q ss_pred CCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCcccccc
Q 043317 440 SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYM 519 (700)
Q Consensus 440 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L 519 (700)
..-..+ ..+..|
T Consensus 374 ~c~p~l--------------------------------------------------------------------~~~~hL 385 (1081)
T KOG0618|consen 374 SCFPVL--------------------------------------------------------------------VNFKHL 385 (1081)
T ss_pred cchhhh--------------------------------------------------------------------ccccce
Confidence 332221 224788
Q ss_pred ceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 043317 520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 599 (700)
Q Consensus 520 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 599 (700)
+.|+|++|++.......+.++..|++|+||+|+++ .+|+.+.++..|++|...+|++. ..| .+..+++|+.+|+|.|
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 99999999999666677899999999999999999 78999999999999999999999 567 8999999999999999
Q ss_pred cCccc-CCCCCCCCCcCCCccCCCcC
Q 043317 600 NLSGL-IPDKGQYSTFDESSYRGNLY 624 (700)
Q Consensus 600 ~l~~~-~p~~~~~~~~~~~~~~gn~~ 624 (700)
+|+-. +|......++....+.||.+
T Consensus 463 ~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 463 NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhhCCCcccceeeccCCcc
Confidence 99753 34332224555556677775
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=8e-35 Score=293.21 Aligned_cols=365 Identities=27% Similarity=0.359 Sum_probs=205.9
Q ss_pred CCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCcc
Q 043317 108 FLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLH 187 (700)
Q Consensus 108 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 187 (700)
...+++++.|.|...++..+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+.+.+..|++..
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKn------------- 92 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKN------------- 92 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhcccccc-------------
Confidence 34455666666667777777777777777777777777776 444433 366666766666666542
Q ss_pred EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCC
Q 043317 188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267 (700)
Q Consensus 188 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 267 (700)
.-+|.+++. +..|+.|||++|++. ..|..+..-+++-.|+||+|+| +.+|...+.++..|-.||||+
T Consensus 93 ----------sGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 93 ----------SGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred ----------CCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc
Confidence 234555555 555666666666665 4555555555666666666666 345555555555555666666
Q ss_pred cccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCC-CCcchhhcCCCCCcEEEcccCcCcccc
Q 043317 268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS-GHIPHWMGNFSNLEILLMSNNCLEGNI 346 (700)
Q Consensus 268 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 346 (700)
|++. ..|+.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+. .+
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 6553 23344455556666666666554322223334556666666665332 345666666777777777777766 66
Q ss_pred hhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccc-ccCChhhhccC
Q 043317 347 PVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE-GQIPDQICQLR 425 (700)
Q Consensus 347 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~ 425 (700)
|+.+..+++|+.|+||+|+|+......-...+|++|+++.|+++ .+|+++..+++|+.|.+.+|+++ .-+|..++.+.
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 66666666666666666666543322223344445555555544 34444444444444444444433 11333444444
Q ss_pred CCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeec
Q 043317 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTK 505 (700)
Q Consensus 426 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 505 (700)
.|+.+
T Consensus 317 ~Levf--------------------------------------------------------------------------- 321 (1255)
T KOG0444|consen 317 QLEVF--------------------------------------------------------------------------- 321 (1255)
T ss_pred hhHHH---------------------------------------------------------------------------
Confidence 44444
Q ss_pred cccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccc
Q 043317 506 NRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQL 585 (700)
Q Consensus 506 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 585 (700)
..++|.+. .+|+.++.+..|+.|.|++|++. ..|+.+.-++.|+.||+..|.-....|.-=
T Consensus 322 -----------------~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 322 -----------------HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred -----------------Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 44444444 56666666667777777777766 567777777777777777776553444322
Q ss_pred cCCCCCCeEecc
Q 043317 586 IELNFLSNFNVS 597 (700)
Q Consensus 586 ~~l~~L~~L~ls 597 (700)
..-+.|+.-++.
T Consensus 383 da~~~lefYNID 394 (1255)
T KOG0444|consen 383 DARKKLEFYNID 394 (1255)
T ss_pred hhhhcceeeecc
Confidence 222344444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-34 Score=290.58 Aligned_cols=365 Identities=24% Similarity=0.289 Sum_probs=212.4
Q ss_pred cCCCCCCEEECCCCcCC-cccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCc
Q 043317 35 KYLSHLKVLDISHNQLS-GSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ 113 (700)
Q Consensus 35 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 113 (700)
+-++-.+-.|+|+|.++ +..|.....++.++.|.|...++. .+| ..++.+.+|++|.+++|+.+.... .+..++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISVHG--ELSDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhhhh--hhccchh
Confidence 34566677777788777 347777777778888877777776 566 467777777777777776544322 3566777
Q ss_pred ccEEEeeCCCC--CCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeC
Q 043317 114 LKVLELANCSL--NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDA 191 (700)
Q Consensus 114 L~~L~L~~n~l--~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 191 (700)
|+.+++..|++ ..+|..++++..|+.||||+|++. ++|..+ ..-+++-.|+|++|+|..+....+.++..|-.|||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 88888888877 567888888888888888888887 777765 35566666777766665333333344444555555
Q ss_pred CCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCC-CCchHHHhcCCcCcEEEcCCccc
Q 043317 192 SSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE-DFSTPFLTGCISLWFLDLSDNNF 270 (700)
Q Consensus 192 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l 270 (700)
++|++. .+|+.+.. +..|++|+|++|.+....-..+..+++|+.|.+++.+-+- .+|..+ ..+.+|..+|+|.|++
T Consensus 158 S~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCC
Confidence 555554 45555544 5566666666665543333333445555556665544322 233322 3455555555555555
Q ss_pred ccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcc-cchhh
Q 043317 271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG-NIPVQ 349 (700)
Q Consensus 271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 349 (700)
. ..|+.+.++++|+.|+|++|+++ ...-......+|++|++|.|+++ .+|.+++.++.|+.|.+.+|+++- -+|..
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 3 33444555555555555555555 22223333445555555555555 455555555555555555555431 24555
Q ss_pred ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCc
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN 412 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~ 412 (700)
++.+..|+.+..++|++.-.+.+...|..|+.|.|+.|++. .+|+++.-++.|..||+..|.
T Consensus 312 IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 55555555555555555444443335555555555555554 455555555555555555554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.5e-27 Score=229.12 Aligned_cols=293 Identities=20% Similarity=0.171 Sum_probs=167.6
Q ss_pred EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCC-C
Q 043317 116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASS-N 194 (700)
Q Consensus 116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~-n 194 (700)
.++.++-.++++|..+- +.-+.++|..|+|+ .+|...|+.+++|+.|+|++|+|+.+-|.+|..+..+..|-+.+ |
T Consensus 50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcccCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 45556666677776553 25677888888887 88888888888888888888888888888888888777766655 6
Q ss_pred cCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc--
Q 043317 195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG-- 272 (700)
Q Consensus 195 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-- 272 (700)
+|+ .+|+..|..+..++.|.+.-|++.....+.|..++++..|.+..|.+.. ++...+..+..++.+.+..|.+..
T Consensus 127 kI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 127 KIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred chh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCcccccc
Confidence 665 7888888878888888888888887777788888888888888887743 444344567777777777776321
Q ss_pred ----------ccccccCCCCCCcEEEcccCcccccccccccCC-CCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccC
Q 043317 273 ----------QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNN 340 (700)
Q Consensus 273 ----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n 340 (700)
..+..+++........+.+.++..+.+..|... .++..--.+.+...+..| .+|..+++|++|++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 112222222223333333333332222222111 111110111111111222 23444445555555555
Q ss_pred cCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcc
Q 043317 341 CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL 413 (700)
Q Consensus 341 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l 413 (700)
+++++-+.+|.+...++.|.|..|++..+....| ++..|++|+|++|+|+...|.+|..+..|.+|++-.|.+
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 5544444444444444444444444444444444 444444444444444444444444444444444444443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=9e-23 Score=241.63 Aligned_cols=308 Identities=21% Similarity=0.217 Sum_probs=212.1
Q ss_pred cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS 192 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 192 (700)
+|+.|++.++.++.+|..+ ...+|+.|++++|.+. .++..+ ..+++|+.|+++++.....+| .+..+++|+.|+++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 5677777776666666655 3466777777777665 555544 366677777776655434444 35566677777777
Q ss_pred CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272 (700)
Q Consensus 193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 272 (700)
+|.....+|..+.. +++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|. ...+|++|++++|.+..
T Consensus 666 ~c~~L~~lp~si~~-L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 666 DCSSLVELPSSIQY-LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE 739 (1153)
T ss_pred CCCCccccchhhhc-cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc
Confidence 76655566666654 6677777777765444555544 567777777777655444442 14567777777777643
Q ss_pred ccccccCCCCCCcEEEcccCccc-------ccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc
Q 043317 273 QFFSKDLNLTQMEFLYLENNKFS-------GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN 345 (700)
Q Consensus 273 ~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 345 (700)
+|..+ .+++|++|.+.++... ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.
T Consensus 740 -lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 740 -FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred -ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 23322 4566777776654321 11122233457899999999987778899999999999999998865557
Q ss_pred chhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC
Q 043317 346 IPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR 425 (700)
Q Consensus 346 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~ 425 (700)
+|... .+++|+.|++++|......+.. .++|+.|++++|.++ .+|.++..+++|+.|++++|+--..+|..+..++
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred eCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 77665 7889999999998665544443 468999999999997 6888999999999999998554336777888999
Q ss_pred CCCEEecCCCc
Q 043317 426 RLGMMDLSHNR 436 (700)
Q Consensus 426 ~L~~L~Ls~N~ 436 (700)
+|+.+++++|.
T Consensus 894 ~L~~L~l~~C~ 904 (1153)
T PLN03210 894 HLETVDFSDCG 904 (1153)
T ss_pred CCCeeecCCCc
Confidence 99999999985
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=7.8e-26 Score=217.47 Aligned_cols=429 Identities=21% Similarity=0.191 Sum_probs=273.8
Q ss_pred EEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccC
Q 043317 139 YLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISN 218 (700)
Q Consensus 139 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~ 218 (700)
..+-++-.++ ++|..+. ..-.+++|..|+|+...+.+|+.+++|+.|||++|+|+ .|.++.|..++++.+|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 4555666666 7887442 46788889999998888888888888888888888877 56666666677777666655
Q ss_pred -CcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc-
Q 043317 219 -NHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG- 296 (700)
Q Consensus 219 -n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 296 (700)
|+|+......|+++..++.|.+.-|++.-. ....+..++++..|.+.+|.+.......+..+..++.+.+..|.+..
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Ci-r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCI-RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcch-hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 888876677888888888888888888654 44445668888888888888877666677888888888888777321
Q ss_pred -----------cccccccCCCCCcEEEcccCcCCCCcchhhcCC-CCCcEEEcccCcCcccch-hhccCCCCCCEEEccC
Q 043317 297 -----------KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNF-SNLEILLMSNNCLEGNIP-VQLLNHRTLKLLSVSE 363 (700)
Q Consensus 297 -----------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~ 363 (700)
..|..++......-..+.+.++..+.+..|... ..+..=..+.+...++.| ..|..+++|+.|++++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 122233333333344444555544444444322 122111223333333433 4589999999999999
Q ss_pred ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317 364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442 (700)
Q Consensus 364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 442 (700)
|+++++.+.+| +...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++...--
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 99999999999 89999999999999987777889999999999999999999999999999999999999998864322
Q ss_pred c-hhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCC--CcccceEEEeeccccccccCcccccc
Q 043317 443 S-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFT--SPQQVKVEFVTKNRYELYNGSNLNYM 519 (700)
Q Consensus 443 ~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~~L 519 (700)
- +++. ++.-. ...+++-...| . +...+++.......|. ++..... .. ...-...++-+
T Consensus 364 l~wl~~--Wlr~~--~~~~~~~Cq~p-----~----~~~~~~~~dv~~~~~~c~~~ee~~~--~~----s~~cP~~c~c~ 424 (498)
T KOG4237|consen 364 LAWLGE--WLRKK--SVVGNPRCQSP-----G----FVRQIPISDVAFGDFRCGGPEELGC--LT----SSPCPPPCTCL 424 (498)
T ss_pred hHHHHH--HHhhC--CCCCCCCCCCC-----c----hhccccchhccccccccCCccccCC--CC----CCCCCCCcchh
Confidence 1 1211 11111 11111111111 0 0000111110000000 0000000 00 00000111222
Q ss_pred ce-EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 043317 520 VG-LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 598 (700)
Q Consensus 520 ~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 598 (700)
.+ ...|+..+. .+|..+. ....+|++.+|.++ .+|+. .+.+| .+|+|+|+++..--..|.++++|.+|-+||
T Consensus 425 ~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 425 DTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 22 233444444 4444333 24567788888887 56665 56677 888888888866667788888888888887
Q ss_pred C
Q 043317 599 N 599 (700)
Q Consensus 599 N 599 (700)
|
T Consensus 498 n 498 (498)
T KOG4237|consen 498 N 498 (498)
T ss_pred C
Confidence 6
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.9e-23 Score=242.11 Aligned_cols=340 Identities=19% Similarity=0.202 Sum_probs=209.7
Q ss_pred CchHHhhcCCCCCEEEccCCcC------cccCCCCCCCC-CCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc
Q 043317 151 FPSWMLQNNTKLEVLFLTNNSF------TGNLRLPNTKH-DFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG 223 (700)
Q Consensus 151 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 223 (700)
+....|.++.+|+.|.+..+.. ...+|..+..+ ..|+.|.+.++.+. .+|..+. +.+|++|++.+|++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence 3444556777777777755432 22334444443 34777777776654 5666552 467777777777766
Q ss_pred cCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCccccccccccc
Q 043317 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLL 303 (700)
Q Consensus 224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 303 (700)
.++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 4555666777777777776654444553 3456777777777776656666667777777777777765444555544
Q ss_pred CCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCccc-------CCCcc-C
Q 043317 304 NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS-------MTSSF-N 375 (700)
Q Consensus 304 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~-~ 375 (700)
++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|+.|.+.++..... .+... .
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 5677777777777544444432 346777777777765 455443 456666666665432111 11111 2
Q ss_pred CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhh
Q 043317 376 LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIEN 455 (700)
Q Consensus 376 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~ 455 (700)
+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------ 843 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------ 843 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------
Confidence 4567777777776666667777777777777777665433555544 566777777776643322221
Q ss_pred ccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCc
Q 043317 456 VDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPS 535 (700)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 535 (700)
...+++.|+|++|.++ .+|.
T Consensus 844 -----------------------------------------------------------~~~nL~~L~Ls~n~i~-~iP~ 863 (1153)
T PLN03210 844 -----------------------------------------------------------ISTNISDLNLSRTGIE-EVPW 863 (1153)
T ss_pred -----------------------------------------------------------cccccCEeECCCCCCc-cChH
Confidence 1145667778887777 5677
Q ss_pred cccCcCCCcEEeCCC-ccCccccCcccccccCCCEEeCCCCc
Q 043317 536 EIGDLQKIRGLNLSH-NCLSGSIPRSFSNLQMIESLDLSNNR 576 (700)
Q Consensus 536 ~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~ 576 (700)
.+..+++|+.|++++ |+++ .+|..+..+++|+.+++++|.
T Consensus 864 si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 777778888888877 4444 566667777778888877774
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=7.9e-22 Score=216.34 Aligned_cols=80 Identities=29% Similarity=0.334 Sum_probs=43.4
Q ss_pred cceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 043317 519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 598 (700)
Q Consensus 519 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 598 (700)
|+.|++++|.+++ +|.. .++|+.|++++|++++ +|..+ .+|+.|++++|+++ .+|..+..++.|+.|++++
T Consensus 384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 4455566666552 3332 1345566666666653 44322 34555666666665 4555566666666666666
Q ss_pred CcCcccCCC
Q 043317 599 NNLSGLIPD 607 (700)
Q Consensus 599 N~l~~~~p~ 607 (700)
|+|+|.+|.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 666655443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.9e-21 Score=211.90 Aligned_cols=264 Identities=25% Similarity=0.279 Sum_probs=137.0
Q ss_pred cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS 192 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 192 (700)
.-..|+++++.++.+|..+. .+|+.|++++|+++ .+|. .+++|++|++++|+++.. |. ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence 45667777777777777664 36777777777776 5664 346677777777776632 32 13456666666
Q ss_pred CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272 (700)
Q Consensus 193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 272 (700)
+|.+. .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++ +|. . ..+|+.|++++|.+++
T Consensus 271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~-l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 271 SNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA-L---PSELCKLWAYNNQLTS 336 (788)
T ss_pred CCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC-C---cccccccccccCcccc
Confidence 66655 34431 2356666666666652 333 13456666666666654 222 1 2345555555555543
Q ss_pred ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccC
Q 043317 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352 (700)
Q Consensus 273 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 352 (700)
. |.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+++ +|..
T Consensus 337 L-P~l---p~~Lq~LdLS~N~Ls~-------------------------LP~l---p~~L~~L~Ls~N~L~~-LP~l--- 380 (788)
T PRK15387 337 L-PTL---PSGLQELSVSDNQLAS-------------------------LPTL---PSELYKLWAYNNRLTS-LPAL--- 380 (788)
T ss_pred c-ccc---ccccceEecCCCccCC-------------------------CCCC---Ccccceehhhcccccc-Cccc---
Confidence 2 110 1234445555554442 2221 1234444444444442 3321
Q ss_pred CCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEec
Q 043317 353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDL 432 (700)
Q Consensus 353 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 432 (700)
..+|+.|++++|.+++.+.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..++.+++|+.|++
T Consensus 381 ~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 381 PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 12445555555555433221 2345555555555552 3432 124555556666555 45555555556666666
Q ss_pred CCCccCCCCCchh
Q 043317 433 SHNRFNGSIPSCF 445 (700)
Q Consensus 433 s~N~l~~~~p~~~ 445 (700)
++|++++..|..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 6666555544444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.5e-19 Score=199.92 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=13.9
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCcEEEccCccCC
Q 043317 210 KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFS 246 (700)
Q Consensus 210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 246 (700)
.++.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT 233 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc
Confidence 3444444444444 2232221 24444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.8e-19 Score=199.40 Aligned_cols=246 Identities=21% Similarity=0.292 Sum_probs=162.5
Q ss_pred cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS 192 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 192 (700)
+...|++++++++.+|..+. ++|+.|++++|+++ .+|..++ ++|+.|++++|++++ +|..+ ...|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence 56789999988888887664 47899999999988 7887654 578899999888873 44433 2468888888
Q ss_pred CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272 (700)
Q Consensus 193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 272 (700)
+|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+ .++|+.|++++|.+..
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l---p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL---PSGITHLNVQSNSLTA 318 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc---hhhHHHHHhcCCcccc
Confidence 88877 6777654 47888888888887 4565543 478888888888864 44332 2467777777777764
Q ss_pred ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccC
Q 043317 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352 (700)
Q Consensus 273 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 352 (700)
. |..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+.
T Consensus 319 L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 L-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred C-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence 3 2222 2567777777777764 444432 56777777777766 3454442 46777777777766 3444332
Q ss_pred CCCCCEEEccCccCcccCCCcc----CCCCCcEEEccCCcCc
Q 043317 353 HRTLKLLSVSENYLSGSMTSSF----NLSSLKHLYVQKNALS 390 (700)
Q Consensus 353 ~~~L~~L~l~~n~l~~~~~~~~----~l~~L~~L~l~~n~l~ 390 (700)
..|+.|++++|+++..+.... .++.+..+++.+|.++
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 246666666666664432211 2355666666666664
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=2.9e-20 Score=191.92 Aligned_cols=279 Identities=22% Similarity=0.270 Sum_probs=146.8
Q ss_pred EEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccc----cccccCCCCCCcEEEcccCcccc------cccccccCCC
Q 043317 237 ILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ----FFSKDLNLTQMEFLYLENNKFSG------KIEEGLLNST 306 (700)
Q Consensus 237 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~~ 306 (700)
.|+|..+.+++.....++..+..|+.++++++.++.. ++..+...++++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777777544445555666777777777776432 22333445556666666655541 1122334444
Q ss_pred CCcEEEcccCcCCCCcchhhcCCCC---CcEEEcccCcCcc----cchhhccCCCCCCEEEccCccCcccCCCccCCCCC
Q 043317 307 KLYQLDISHNFLSGHIPHWMGNFSN---LEILLMSNNCLEG----NIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSL 379 (700)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L 379 (700)
+|+.|++++|.+.+..+..+..+.. |++|++++|++.+ .+...+..+ .++|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~----------------------~~~L 139 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL----------------------PPAL 139 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC----------------------CCCc
Confidence 5555555555544333333333332 4444444444431 111112222 1556
Q ss_pred cEEEccCCcCccC----cchhhhCCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccCCCCCchhhhhhhh
Q 043317 380 KHLYVQKNALSGP----IPDMLFRSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQW 451 (700)
Q Consensus 380 ~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 451 (700)
++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.....+....
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-- 217 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL-- 217 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh--
Confidence 6666666665522 233444556666666666666532 222334445677777777666532221111100
Q ss_pred hhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcc
Q 043317 452 TIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG 531 (700)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 531 (700)
..++.|+.|++++|.+++
T Consensus 218 --------------------------------------------------------------~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 218 --------------------------------------------------------------ASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred --------------------------------------------------------------cccCCCCEEecCCCcCch
Confidence 113566667777776664
Q ss_pred cCCcccc-----CcCCCcEEeCCCccCc----cccCcccccccCCCEEeCCCCcCccc----CcccccCC-CCCCeEecc
Q 043317 532 NVPSEIG-----DLQKIRGLNLSHNCLS----GSIPRSFSNLQMIESLDLSNNRLSGQ----IPAQLIEL-NFLSNFNVS 597 (700)
Q Consensus 532 ~~p~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls 597 (700)
.....+. ..+.|++|++++|.++ ..+...+..+++|+.+|+++|.++.. ....+... +.|+++++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 2222221 1357777777777775 22344556667778888888887744 44444444 567777777
Q ss_pred CCcC
Q 043317 598 YNNL 601 (700)
Q Consensus 598 ~N~l 601 (700)
+|++
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 7764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=2e-19 Score=185.58 Aligned_cols=207 Identities=22% Similarity=0.257 Sum_probs=133.8
Q ss_pred EEEccCCcCC-ccCCccccCCCCCcEEEccCccCCCCCchH---HHhcCCcCcEEEcCCccccc------ccccccCCCC
Q 043317 213 VLDISNNHFE-GNIPSSVGEMKELIILHLSKNNFSEDFSTP---FLTGCISLWFLDLSDNNFYG------QFFSKDLNLT 282 (700)
Q Consensus 213 ~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~ 282 (700)
.|+|..+.++ ......+..+..|+.++++++.+++..... .....+++++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 344556677888999999999986532222 23456779999999998862 2334566788
Q ss_pred CCcEEEcccCcccccccccccCCCC---CcEEEcccCcCCC----CcchhhcCC-CCCcEEEcccCcCccc----chhhc
Q 043317 283 QMEFLYLENNKFSGKIEEGLLNSTK---LYQLDISHNFLSG----HIPHWMGNF-SNLEILLMSNNCLEGN----IPVQL 350 (700)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~ 350 (700)
+|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999998666666655555 9999999999874 233455666 8999999999999843 23344
Q ss_pred cCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccccc----CChhhhccCC
Q 043317 351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ----IPDQICQLRR 426 (700)
Q Consensus 351 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~ 426 (700)
..+.+|++|++++|.+++.... .++..+..+++|++|++++|.+++. ++..+..+++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIR-------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHH-------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 4555666666666655531110 1122233334555555555554422 1223445556
Q ss_pred CCEEecCCCccC
Q 043317 427 LGMMDLSHNRFN 438 (700)
Q Consensus 427 L~~L~Ls~N~l~ 438 (700)
|++|++++|+++
T Consensus 223 L~~L~ls~n~l~ 234 (319)
T cd00116 223 LEVLNLGDNNLT 234 (319)
T ss_pred CCEEecCCCcCc
Confidence 666666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.9e-19 Score=151.89 Aligned_cols=185 Identities=26% Similarity=0.419 Sum_probs=147.8
Q ss_pred ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 429 (700)
+..+..++.|.+++|+++..+|....+.+|+.|++.+|++. .+|..+..+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556677788888888877777777888888888888887 68888888999999999999888 78899999999999
Q ss_pred EecCCCccCC-CCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc
Q 043317 430 MDLSHNRFNG-SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY 508 (700)
Q Consensus 430 L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 508 (700)
||+++|++.. ..|..|..+
T Consensus 107 ldltynnl~e~~lpgnff~m------------------------------------------------------------ 126 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYM------------------------------------------------------------ 126 (264)
T ss_pred hhccccccccccCCcchhHH------------------------------------------------------------
Confidence 9999988864 345555443
Q ss_pred ccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC
Q 043317 509 ELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL 588 (700)
Q Consensus 509 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 588 (700)
+.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|+.|.+.+|+++ .+|..++.+
T Consensus 127 --------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 127 --------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred --------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 44556888999988 78888999999999999999988 78999999999999999999998 566666665
Q ss_pred CC---CCeEeccCCcCcccCCC
Q 043317 589 NF---LSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 589 ~~---L~~L~ls~N~l~~~~p~ 607 (700)
.- =+.+.+.+|++...|.+
T Consensus 196 ~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 196 DLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hhhhhHHHHhhhhCCCCChHHH
Confidence 43 24566677887655543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-18 Score=149.22 Aligned_cols=169 Identities=26% Similarity=0.470 Sum_probs=150.9
Q ss_pred CCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhh
Q 043317 370 MTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNML 449 (700)
Q Consensus 370 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 449 (700)
.+..|.+...+.|.+++|+++ .+|..+..+.+|+.|++++|+++ ..|.+++.+++|+.|+++-|++. ..|..|+++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~- 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF- 101 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC-
Confidence 345567888999999999998 67778899999999999999999 78999999999999999999987 777777664
Q ss_pred hhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcC
Q 043317 450 QWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNEL 529 (700)
Q Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 529 (700)
+.|+.|||++|++
T Consensus 102 -------------------------------------------------------------------p~levldltynnl 114 (264)
T KOG0617|consen 102 -------------------------------------------------------------------PALEVLDLTYNNL 114 (264)
T ss_pred -------------------------------------------------------------------chhhhhhcccccc
Confidence 5677799999999
Q ss_pred cc-cCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC
Q 043317 530 TG-NVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 608 (700)
Q Consensus 530 ~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 608 (700)
.. ..|+.|..++.|+.|+|+.|.+. .+|..++++++||.|.+..|.+. ..|..++.+++|+.|.+.+|+++-.+|..
T Consensus 115 ~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 74 67999999999999999999998 88889999999999999999998 78999999999999999999999888875
Q ss_pred CCC
Q 043317 609 GQY 611 (700)
Q Consensus 609 ~~~ 611 (700)
+++
T Consensus 193 ~~l 195 (264)
T KOG0617|consen 193 ANL 195 (264)
T ss_pred hhh
Confidence 544
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=4.5e-15 Score=164.26 Aligned_cols=118 Identities=34% Similarity=0.588 Sum_probs=105.5
Q ss_pred ccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 043317 518 YMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 597 (700)
Q Consensus 518 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 597 (700)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCC--CCCCCcCCCccCCCcCCcCcCCCCCCC
Q 043317 598 YNNLSGLIPDK--GQYSTFDESSYRGNLYLCGPTINKSCN 635 (700)
Q Consensus 598 ~N~l~~~~p~~--~~~~~~~~~~~~gn~~lcg~~~~~~c~ 635 (700)
+|+++|.+|.. ..+.......+.+|+.+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999973 222233445788999999987656674
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=6.9e-14 Score=141.88 Aligned_cols=195 Identities=27% Similarity=0.456 Sum_probs=154.0
Q ss_pred CCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV 384 (700)
Q Consensus 305 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 384 (700)
+..-...|++.|++. .+|..++.+..|+.+.+..|.+. .+|..++++..|++++++.|+++..+...+.++ |+.|.+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 344556788888887 67777777778888888888887 678888888888888888888887777766544 888889
Q ss_pred cCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCcc
Q 043317 385 QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS 464 (700)
Q Consensus 385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 464 (700)
++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L---------------- 211 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL---------------- 211 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC----------------
Confidence 999987 67888888889999999999988 67888899999999999999886 555554432
Q ss_pred CCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCc
Q 043317 465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544 (700)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 544 (700)
.|..||+|+|+++ .+|-.|..|+.|+
T Consensus 212 -----------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 212 -----------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred -----------------------------------------------------ceeeeecccCcee-ecchhhhhhhhhe
Confidence 3567999999998 8888999999999
Q ss_pred EEeCCCccCccccCccc---ccccCCCEEeCCCCc
Q 043317 545 GLNLSHNCLSGSIPRSF---SNLQMIESLDLSNNR 576 (700)
Q Consensus 545 ~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~ 576 (700)
+|-|.+|.++ ..|..+ +...-.++|+..-++
T Consensus 238 ~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 238 VLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9999999998 566544 334445777777774
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=7.1e-12 Score=133.10 Aligned_cols=198 Identities=32% Similarity=0.425 Sum_probs=105.7
Q ss_pred EEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCC-CCcEEEccCCcCccCcchhhhCCCCccEEECcCCc
Q 043317 334 ILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLS-SLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN 412 (700)
Q Consensus 334 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~ 412 (700)
.++++.|.+.. ....+.....++.|++.+|.++.+.+...... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 34555554431 12223333455555555555555544443342 5666666666665 344455566666666666666
Q ss_pred ccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCC
Q 043317 413 LEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMF 492 (700)
Q Consensus 413 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (700)
+. .+|......+.|+.|++++|++. .+|.....
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~--------------------------------------------- 207 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL--------------------------------------------- 207 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh---------------------------------------------
Confidence 66 44444445666666666666665 33322110
Q ss_pred CCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeC
Q 043317 493 TSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL 572 (700)
Q Consensus 493 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 572 (700)
...|+++++++|.+. ..+..+..+.++..+.+++|++. ..+..++.++.+++|++
T Consensus 208 -----------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 208 -----------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262 (394)
T ss_pred -----------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecc
Confidence 123445555555433 34445555666666666666665 23555566666666666
Q ss_pred CCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317 573 SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 573 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 607 (700)
++|+++...+ +..+..++.|++++|.++...|.
T Consensus 263 s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 263 SNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccccc--ccccCccCEEeccCccccccchh
Confidence 6666663322 55666666666666666555443
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.28 E-value=7e-12 Score=139.02 Aligned_cols=90 Identities=34% Similarity=0.536 Sum_probs=82.8
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC-CCCCeEe
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL-NFLSNFN 595 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ 595 (700)
+.|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ ..+..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 678899999999999999999999999999999999999999999999999999999999999999998774 4678899
Q ss_pred ccCCcCcccCC
Q 043317 596 VSYNNLSGLIP 606 (700)
Q Consensus 596 ls~N~l~~~~p 606 (700)
+++|+..+..|
T Consensus 522 ~~~N~~lc~~p 532 (623)
T PLN03150 522 FTDNAGLCGIP 532 (623)
T ss_pred ecCCccccCCC
Confidence 99998665454
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=2e-11 Score=129.65 Aligned_cols=103 Identities=37% Similarity=0.424 Sum_probs=45.9
Q ss_pred CCCcEEEcccCcCCCCcchhhcCCC-CCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317 306 TKLYQLDISHNFLSGHIPHWMGNFS-NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV 384 (700)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 384 (700)
+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..++.|+.|++++|+++...+.....+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 44555555555555 2333333332 5555555555554 3333344444444444444444444333223444444444
Q ss_pred cCCcCccCcchhhhCCCCccEEECcCC
Q 043317 385 QKNALSGPIPDMLFRSSKLMTLDLRGN 411 (700)
Q Consensus 385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N 411 (700)
++|++. .+|........|+++.+++|
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 444444 33333323333444444444
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=4.1e-13 Score=136.32 Aligned_cols=213 Identities=26% Similarity=0.321 Sum_probs=158.8
Q ss_pred EEEccCCcCCccCCccc--cCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317 213 VLDISNNHFEGNIPSSV--GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290 (700)
Q Consensus 213 ~L~L~~n~i~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 290 (700)
+|.|++-++. .+|..- -.+.--...|++.|++.. +|..+ ..+..|+.+.++.|.+. .+|..+.++..|+.++++
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~e-lp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSE-LPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhcccccccc-CchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence 3445555544 233221 234445678899999864 66665 34778888888888885 456777888888999999
Q ss_pred cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC
Q 043317 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370 (700)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 370 (700)
.|+++ ..|..++.++ |+.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|..++++.+|+.|.+..|.+...+
T Consensus 130 ~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 130 SNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred cchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC
Confidence 99888 5666666664 888888999888 67777888888889999999887 67777888888999999988888777
Q ss_pred CCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC---CCCEEecCCCc
Q 043317 371 TSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR---RLGMMDLSHNR 436 (700)
Q Consensus 371 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~---~L~~L~Ls~N~ 436 (700)
++.. .-.|..||++.|+++ .+|-.|..|..|++|-|.+|.+. ..|..+|-.- -.++|+..-++
T Consensus 206 ~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 206 EELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7665 345888899999887 78888888999999999999888 5676665433 34566666663
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=8.4e-12 Score=116.97 Aligned_cols=208 Identities=24% Similarity=0.244 Sum_probs=138.4
Q ss_pred cchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccC-CcCccCcchhhhCC
Q 043317 322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQK-NALSGPIPDMLFRS 400 (700)
Q Consensus 322 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~ 400 (700)
.|-.+.-+.+|..+.++.+.-.. +......-+.|+++.+.+..++..+. ......+....-+. .-..|..-..+...
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccCCceEEecchH
Confidence 33344556677788877775442 22222234577777776655543221 11111111111111 11122222223334
Q ss_pred CCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccc
Q 043317 401 SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNS 480 (700)
Q Consensus 401 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (700)
..|+++|+++|.|+ .+.++..-++.++.|++|+|.+.. +.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nL-------------------------------- 325 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNL-------------------------------- 325 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhh--------------------------------
Confidence 67899999999998 677788888999999999998862 1111
Q ss_pred ccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcc
Q 043317 481 TLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRS 560 (700)
Q Consensus 481 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 560 (700)
..+++|+.||||+|.++ .+.+.-..+.+.+.|+|+.|.|. .-..
T Consensus 326 ---------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSG 369 (490)
T KOG1259|consen 326 ---------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSG 369 (490)
T ss_pred ---------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhh
Confidence 12478899999999998 55566667889999999999997 3456
Q ss_pred cccccCCCEEeCCCCcCcccCc-ccccCCCCCCeEeccCCcCcccC
Q 043317 561 FSNLQMIESLDLSNNRLSGQIP-AQLIELNFLSNFNVSYNNLSGLI 605 (700)
Q Consensus 561 ~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~ 605 (700)
++++-+|..||+++|+|..... ..+++++.|+.+.+.+|++.+.+
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 7889999999999999974322 36889999999999999999654
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-11 Score=121.79 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=18.6
Q ss_pred CCcCcEEEcCCccccccc-ccccCCCCCCcEEEcccCccc
Q 043317 257 CISLWFLDLSDNNFYGQF-FSKDLNLTQMEFLYLENNKFS 295 (700)
Q Consensus 257 ~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 295 (700)
+++|++|+++.|++.... ...+..+++|+.|.+..|.++
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 445555555555553211 122233455556666666555
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.3e-11 Score=119.03 Aligned_cols=211 Identities=21% Similarity=0.115 Sum_probs=118.7
Q ss_pred CCCcccEEEeeCCCCCCcC--hhhcCCCCCCEEEccCCCCCccC-chHHhhcCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 043317 110 PTFQLKVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGDF-PSWMLQNNTKLEVLFLTNNSFTGNLRL-PNTKHDF 185 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~ 185 (700)
++.+|+++.|.++.....+ .....+++++.||||.|-+..-. -..+.+.+++|+.|+++.|.+..-... .-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4557889999998886666 36678899999999999776322 234456888999999998887521111 1123455
Q ss_pred ccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEc
Q 043317 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDL 265 (700)
Q Consensus 186 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 265 (700)
|+.|.++.|.++-.--.++...+|+|+.|++..|...........-+..|+.|||++|++.......
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~------------- 265 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY------------- 265 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-------------
Confidence 6666666666552222223333556666666666422222223333445555555555554322111
Q ss_pred CCcccccccccccCCCCCCcEEEcccCccccc-cccc-----ccCCCCCcEEEcccCcCCCC-cchhhcCCCCCcEEEcc
Q 043317 266 SDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK-IEEG-----LLNSTKLYQLDISHNFLSGH-IPHWMGNFSNLEILLMS 338 (700)
Q Consensus 266 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-----~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~ 338 (700)
....++.|+.|+++.+.++.. .|+. ....++|++|+++.|++.+. .-..+..+++|+.|.+.
T Consensus 266 -----------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 266 -----------KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred -----------ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 223445555555555554432 1111 23456777777777777521 11223445667777777
Q ss_pred cCcCcc
Q 043317 339 NNCLEG 344 (700)
Q Consensus 339 ~n~l~~ 344 (700)
.|.++.
T Consensus 335 ~n~ln~ 340 (505)
T KOG3207|consen 335 LNYLNK 340 (505)
T ss_pred cccccc
Confidence 777663
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-11 Score=117.26 Aligned_cols=247 Identities=21% Similarity=0.245 Sum_probs=136.8
Q ss_pred CCCCCCccEEeCCCCcCccccChhHHhhc---cCCcEEEccCCcCCc----cCCc-------cccCCCCCcEEEccCccC
Q 043317 180 NTKHDFLHHLDASSNNFIGTLPQDMGTIL---KKLLVLDISNNHFEG----NIPS-------SVGEMKELIILHLSKNNF 245 (700)
Q Consensus 180 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~L~~n~i~~----~~~~-------~l~~l~~L~~L~L~~n~l 245 (700)
...+..++.+++++|.+...-...+...+ ++|+..++++- ++| .+|+ .+..+++|++++||.|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34566677777777776544444444332 34555555542 222 1222 223344555555555555
Q ss_pred CCCCchH---HHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC-
Q 043317 246 SEDFSTP---FLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH- 321 (700)
Q Consensus 246 ~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~- 321 (700)
....+.. +++++..|++|.|.+|.+.......++. .|..|. .......-+.|+++...+|++...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 4332222 1233444444444444332111111000 000000 011123346778888888877543
Q ss_pred ---cchhhcCCCCCcEEEcccCcCcc----cchhhccCCCCCCEEEccCccCcccCCCc----c-CCCCCcEEEccCCcC
Q 043317 322 ---IPHWMGNFSNLEILLMSNNCLEG----NIPVQLLNHRTLKLLSVSENYLSGSMTSS----F-NLSSLKHLYVQKNAL 389 (700)
Q Consensus 322 ---~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~-~l~~L~~L~l~~n~l 389 (700)
+...|...+.|+.+.+..|.|.. .....+..++.|+.|||.+|.++...... + .+++|++|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 23455667788888888887652 13345677888888888888776433222 2 467888888888888
Q ss_pred ccCcchhhh-----CCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccC
Q 043317 390 SGPIPDMLF-----RSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 390 ~~~~~~~~~-----~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
...-...+. ..++|++|.+.+|.|+.. +..++...+.|..|+|++|++.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 655443332 357899999999988732 2334456788999999999884
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=7e-11 Score=113.69 Aligned_cols=246 Identities=19% Similarity=0.239 Sum_probs=157.5
Q ss_pred hcCCCCCEEEccCCcCcc----cCCCCCCCCCCccEEeCCCCc---CccccChhHHh------hccCCcEEEccCCcCCc
Q 043317 157 QNNTKLEVLFLTNNSFTG----NLRLPNTKHDFLHHLDASSNN---FIGTLPQDMGT------ILKKLLVLDISNNHFEG 223 (700)
Q Consensus 157 ~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~------~l~~L~~L~L~~n~i~~ 223 (700)
..+..++.+++++|.+.. .+...+.+.+.|+..++++-- ....+|..+.. .+++|++|+||+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 366789999999998853 333445677789999988642 22344444321 24689999999999875
Q ss_pred cCCccc----cCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCccccc--
Q 043317 224 NIPSSV----GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK-- 297 (700)
Q Consensus 224 ~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 297 (700)
..+..| ..+..|+.|.|.+|.+.......+. ..|..|. .+ .....-+.|+.+...+|++...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELA--VN-------KKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHH--HH-------hccCCCcceEEEEeeccccccccH
Confidence 555444 4578999999999988532222211 1122221 11 1122345677777777766532
Q ss_pred --ccccccCCCCCcEEEcccCcCCCC----cchhhcCCCCCcEEEcccCcCccc----chhhccCCCCCCEEEccCccCc
Q 043317 298 --IEEGLLNSTKLYQLDISHNFLSGH----IPHWMGNFSNLEILLMSNNCLEGN----IPVQLLNHRTLKLLSVSENYLS 367 (700)
Q Consensus 298 --~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 367 (700)
+...+...+.|+.+.++.|.|... ....|..+++|+.|||.+|.++.. +...++.++.|+.+++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 223445566777777777766422 234566777777777777777632 3344566677888888888776
Q ss_pred ccCCCcc------CCCCCcEEEccCCcCccC----cchhhhCCCCccEEECcCCccc
Q 043317 368 GSMTSSF------NLSSLKHLYVQKNALSGP----IPDMLFRSSKLMTLDLRGNNLE 414 (700)
Q Consensus 368 ~~~~~~~------~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~N~l~ 414 (700)
......+ ..|+|+++.+.+|.++.. +...+...+.|..|++++|++.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 5443332 468899999999988643 2333455789999999999984
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=4.3e-11 Score=112.26 Aligned_cols=135 Identities=26% Similarity=0.336 Sum_probs=110.4
Q ss_pred ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcE
Q 043317 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH 381 (700)
Q Consensus 302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 381 (700)
+...+.|+++|||+|.|+ .+.+...-.|.++.|++++|.+.. +. .+..+++|+.||+++|.++........+-+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 344578999999999998 666777788999999999999973 33 388899999999999999877665558889999
Q ss_pred EEccCCcCccCcchhhhCCCCccEEECcCCcccccC-ChhhhccCCCCEEecCCCccCCCC
Q 043317 382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI-PDQICQLRRLGMMDLSHNRFNGSI 441 (700)
Q Consensus 382 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~ 441 (700)
|.+++|.+.. -..+..+-+|..||+++|+|.... ...+++++.|+.+.|.+|++.+..
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999999853 245677889999999999997432 346789999999999999998543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.5e-10 Score=104.74 Aligned_cols=127 Identities=24% Similarity=0.210 Sum_probs=38.8
Q ss_pred CCCCCCEEECCCCcCCcccchhcc-CCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcc
Q 043317 36 YLSHLKVLDISHNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114 (700)
Q Consensus 36 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 114 (700)
+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+. ++ .+..+++|++|++++|.... +.......+++|
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc--CccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 334455666666665532 1233 35556666666666552 22 35555666666665544322 211111235566
Q ss_pred cEEEeeCCCCCCcC--hhhcCCCCCCEEEccCCCCCcc--CchHHhhcCCCCCEEEcc
Q 043317 115 KVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGD--FPSWMLQNNTKLEVLFLT 168 (700)
Q Consensus 115 ~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~L~ 168 (700)
++|++++|++..+. ..+..+++|++|+|.+|.++.. ....+...+++|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 66666666664332 3455677888888888877632 122345577888887753
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=5.2e-10 Score=101.25 Aligned_cols=81 Identities=30% Similarity=0.287 Sum_probs=26.7
Q ss_pred CCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCc-chhhhCCCCccEEECcCCcccccC---ChhhhccCC
Q 043317 352 NHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPI-PDMLFRSSKLMTLDLRGNNLEGQI---PDQICQLRR 426 (700)
Q Consensus 352 ~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~~~---~~~~~~l~~ 426 (700)
.++.|+.|++++|.|+...+... .+++|++|++++|++...- -..+..+++|++|++.+|+++... ...+..+|+
T Consensus 62 ~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~ 141 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS 141 (175)
T ss_dssp --TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT
T ss_pred ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh
Confidence 34444444444444443322111 2444555555555443211 123445666666666666665321 124566777
Q ss_pred CCEEec
Q 043317 427 LGMMDL 432 (700)
Q Consensus 427 L~~L~L 432 (700)
|+.||-
T Consensus 142 Lk~LD~ 147 (175)
T PF14580_consen 142 LKVLDG 147 (175)
T ss_dssp -SEETT
T ss_pred hheeCC
Confidence 777774
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=3.8e-10 Score=83.85 Aligned_cols=60 Identities=43% Similarity=0.581 Sum_probs=37.1
Q ss_pred CCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317 542 KIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 601 (700)
Q Consensus 542 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 601 (700)
+|++|++++|+++...+..|.++++|++|++++|+++...|.+|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666655556666666666666666654
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-10 Score=123.71 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=55.8
Q ss_pred cceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc---cCccc-ccCCCCCCeE
Q 043317 519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG---QIPAQ-LIELNFLSNF 594 (700)
Q Consensus 519 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~p~~-l~~l~~L~~L 594 (700)
|+.+++++|++. ..+..+..+..+..|++++|++... ..+.....+..+..+.|.+.. ..... ....+.++.+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 566777788777 4435566777788888888887632 234556677777777777652 11221 4556677788
Q ss_pred eccCCcCcccCC
Q 043317 595 NVSYNNLSGLIP 606 (700)
Q Consensus 595 ~ls~N~l~~~~p 606 (700)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888888776554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=7.7e-10 Score=82.18 Aligned_cols=61 Identities=43% Similarity=0.574 Sum_probs=57.5
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcC
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRL 577 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 577 (700)
++|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999988889999999999999999999998899999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=5.6e-10 Score=118.61 Aligned_cols=217 Identities=29% Similarity=0.295 Sum_probs=128.3
Q ss_pred CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEcc
Q 043317 306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQ 385 (700)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 385 (700)
..++.++++.|.+.. +-..+..+.+|+.|++.+|.|.. +...+..+++|++|++++|.|+....-. .++.|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchh-hccchhhheec
Confidence 344444455554442 22224445555556666555552 2222445566666666666665443322 34446677777
Q ss_pred CCcCccCcchhhhCCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCcc
Q 043317 386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS 464 (700)
Q Consensus 386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 464 (700)
+|.++.. ..+..+..|+.+++++|++...-+ . ...+.+++.+++.+|.+....... .
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~--~----------------- 206 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD--L----------------- 206 (414)
T ss_pred cCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH--H-----------------
Confidence 7776532 233446677777777777764333 1 466777777777777765211111 0
Q ss_pred CCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcC--C
Q 043317 465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQ--K 542 (700)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~ 542 (700)
+..+..+++..|.++...+ +..+. .
T Consensus 207 ---------------------------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~ 233 (414)
T KOG0531|consen 207 ---------------------------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLH 233 (414)
T ss_pred ---------------------------------------------------HHHHHHhhcccccceeccC--cccchhHH
Confidence 1223334667777763322 22233 3
Q ss_pred CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcc
Q 043317 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 603 (700)
Q Consensus 543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 603 (700)
|+.+++++|.+. ..+..+..+..++.||+++|++... ..+.....+..+....|++..
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence 899999999998 4557788899999999999999854 235566677777888887763
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=1.3e-08 Score=115.67 Aligned_cols=129 Identities=25% Similarity=0.305 Sum_probs=82.3
Q ss_pred CcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCC--CCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317 112 FQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNN--LVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189 (700)
Q Consensus 112 ~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 189 (700)
...+...+-+|.+..++... .+++|++|-+..|. +. .++..+|..++.|++|++++|.--+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 35666667777665555443 23367777777775 43 6666666677777777777766555666666666677777
Q ss_pred eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCcc
Q 043317 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN 244 (700)
Q Consensus 190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 244 (700)
++++..+. .+|..+.. +..|.+|++..+.....+|.....+++|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77766655 66666665 5667777766665444445555556666666665543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=2.6e-08 Score=113.14 Aligned_cols=274 Identities=20% Similarity=0.200 Sum_probs=125.9
Q ss_pred CcCcEEEcCCcc--cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEE
Q 043317 258 ISLWFLDLSDNN--FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEIL 335 (700)
Q Consensus 258 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 335 (700)
++|++|-+..|. +.......|..++.|+.||+++|.--+..|..++.+-+|++|++++..+. .+|..+.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 344444444443 22222233444555555555555444455555555555555555555555 455555555555555
Q ss_pred EcccCcCcccchhhccCCCCCCEEEccCccCcccCC--C-ccCCCCCcEEEccCCcCccCcchhhhCCCCcc----EEEC
Q 043317 336 LMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMT--S-SFNLSSLKHLYVQKNALSGPIPDMLFRSSKLM----TLDL 408 (700)
Q Consensus 336 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~l 408 (700)
++..+.-...+|.....+++|++|.+-.-....... . ...+.+|+.+....... .+-..+..++.|. .+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence 555554433344444445555555554433111100 0 01334444444332221 0111112222222 2232
Q ss_pred cCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccc
Q 043317 409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK 488 (700)
Q Consensus 409 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (700)
.++... ..+..+..+.+|+.|.+.++.+............... .|....... ...+
T Consensus 702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~-----------------~f~~l~~~~-----~~~~- 757 (889)
T KOG4658|consen 702 EGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL-----------------CFPNLSKVS-----ILNC- 757 (889)
T ss_pred cccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh-----------------hHHHHHHHH-----hhcc-
Confidence 233322 3445566777777777777776532222211110000 000000000 0000
Q ss_pred ccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccc-cCcccccccCC
Q 043317 489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGS-IPRSFSNLQMI 567 (700)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 567 (700)
..++.+.. ....++|+.|.+.++.....+.+....+..+..+-+..+.+.+. .-...++++++
T Consensus 758 ----~~~r~l~~------------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i 821 (889)
T KOG4658|consen 758 ----HMLRDLTW------------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQL 821 (889)
T ss_pred ----ccccccch------------hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCcee
Confidence 00000000 01237888899998888777777777777777777777777765 34445555555
Q ss_pred CEEeCCC
Q 043317 568 ESLDLSN 574 (700)
Q Consensus 568 ~~L~Ls~ 574 (700)
..+.++.
T Consensus 822 ~~~~l~~ 828 (889)
T KOG4658|consen 822 YWLPLSF 828 (889)
T ss_pred EecccCc
Confidence 5554443
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.59 E-value=3.7e-09 Score=87.94 Aligned_cols=89 Identities=26% Similarity=0.380 Sum_probs=59.3
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 596 (700)
+..+.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||..+|.+. .+|..+-.-+.....++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 45666778888887 67777888888888888888887 66777777888888888887776 44544333233333444
Q ss_pred cCCcCcccCCCC
Q 043317 597 SYNNLSGLIPDK 608 (700)
Q Consensus 597 s~N~l~~~~p~~ 608 (700)
.++++.+..|.+
T Consensus 154 gnepl~~~~~~k 165 (177)
T KOG4579|consen 154 GNEPLGDETKKK 165 (177)
T ss_pred cCCcccccCccc
Confidence 555665555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.5e-09 Score=98.36 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=93.6
Q ss_pred CccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCc-cCCCCCchHHHhcCCcCcEE
Q 043317 185 FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKN-NFSEDFSTPFLTGCISLWFL 263 (700)
Q Consensus 185 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L 263 (700)
.|+++||+...++..--..+...+.+|+.|.+.++++...+...+++-.+|+.|+++.+ .+++......+++|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47888888777664444455556778888888888888777777888888888888875 35444445566777888888
Q ss_pred EcCCcccccccccccC--CCCCCcEEEcccCccc---ccccccccCCCCCcEEEcccC-cCCCCcchhhcCCCCCcEEEc
Q 043317 264 DLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFS---GKIEEGLLNSTKLYQLDISHN-FLSGHIPHWMGNFSNLEILLM 337 (700)
Q Consensus 264 ~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 337 (700)
+++.|.+......... --++|+.|+++++.-. ..+..-...+++|.+||||+| .++...-..|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8888766543321111 1234566666655321 011112234556666666654 333333334445555555555
Q ss_pred ccCc
Q 043317 338 SNNC 341 (700)
Q Consensus 338 ~~n~ 341 (700)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.7e-09 Score=98.85 Aligned_cols=178 Identities=22% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCCEEECCCCcCCcc-cchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccC-CCCCCCcccE
Q 043317 39 HLKVLDISHNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE-NFLPTFQLKV 116 (700)
Q Consensus 39 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~ 116 (700)
+|++||||+..|+.. +-..++.|.+|+.|.+.++++.+.+. ..+++-.+|+.|+++.++-....... -+..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 467777776666633 23344566777777777777665544 34666667777777666533222211 2345666777
Q ss_pred EEeeCCCC-CCc-ChhhcC-CCCCCEEEccCCCC--CccCchHHhhcCCCCCEEEccCCc-CcccCCCCCCCCCCccEEe
Q 043317 117 LELANCSL-NVV-PTFLLH-QYDLKYLDLSLNNL--VGDFPSWMLQNNTKLEVLFLTNNS-FTGNLRLPNTKHDFLHHLD 190 (700)
Q Consensus 117 L~L~~n~l-~~~-p~~l~~-~~~L~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ 190 (700)
|++++|.+ ++. ...+.+ -++|+.|+|+++.= ...--+.+...+++|..|+|++|. ++......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77777766 221 111221 23566666666531 111112233466677777776653 3322333455666777777
Q ss_pred CCCCcCccccChhHH--hhccCCcEEEccCC
Q 043317 191 ASSNNFIGTLPQDMG--TILKKLLVLDISNN 219 (700)
Q Consensus 191 l~~n~l~~~~~~~~~--~~l~~L~~L~L~~n 219 (700)
++.|.. .+|..+. ...+.|.+|++.++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 777652 2333221 12456777776654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=2.4e-08 Score=104.98 Aligned_cols=127 Identities=26% Similarity=0.182 Sum_probs=89.3
Q ss_pred CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEc
Q 043317 306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYV 384 (700)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l 384 (700)
..|...+.+.|++. .+..++.-++.++.|+|++|+++.. +.+..++.|++||++.|.+..++.-.. ++. |+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 35677777788776 5566677778888888888888732 267778888888888888876654444 444 888888
Q ss_pred cCCcCccCcchhhhCCCCccEEECcCCcccccC-ChhhhccCCCCEEecCCCccC
Q 043317 385 QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI-PDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
++|.++.. ..+.++.+|+.||+++|-+.+.. -..+..+..|+.|.|.+|++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88887632 34567788888888888776432 123456677788888888764
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=2.7e-07 Score=86.06 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=18.7
Q ss_pred CCCCCCEEECCCCcCCcc----cchhccCCCCCCEEeCCC
Q 043317 36 YLSHLKVLDISHNQLSGS----LSSTITSLTSLEYLDLSY 71 (700)
Q Consensus 36 ~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~ 71 (700)
.+..++.+|||+|.|... +...+.+-.+|+..++|.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 355566666666665533 223344445555555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=3.8e-08 Score=103.55 Aligned_cols=127 Identities=30% Similarity=0.296 Sum_probs=84.5
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEc
Q 043317 210 KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYL 289 (700)
Q Consensus 210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 289 (700)
+|...+.+.|++. ..-.++.-++.++.|+|++|+++.. .++..|++|++|||++|.+....--....+. |..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4667777777776 4455566677788888888887652 2456678888888888877654433333444 777888
Q ss_pred ccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccCcCc
Q 043317 290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNNCLE 343 (700)
Q Consensus 290 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 343 (700)
++|.++.. ..+.++.+|+.||+++|-+.+.-. ..++.+..|+.|.|.+|.+-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88877643 346677788888888887654311 22445566777777777764
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=4.4e-07 Score=85.81 Aligned_cols=216 Identities=21% Similarity=0.154 Sum_probs=118.2
Q ss_pred ccCCCCCCEEECCCCcCCcccc-hhc-cCCCCCCEEeCCCCcCCCCCCh-hhccCCCCCcEEEcccCccccccccCCCCC
Q 043317 34 LKYLSHLKVLDISHNQLSGSLS-STI-TSLTSLEYLDLSYNNFEGPCPL-SSLANHSKLEVLLLSSTNNMLLVKTENFLP 110 (700)
Q Consensus 34 ~~~l~~L~~L~Ls~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 110 (700)
+..+.-++.|.+.++.|...-. ..| ..++.++.+||.+|.|+..... ..+.++|.|++|+++.|.....|.... .+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc
Confidence 3444455566677776653321 123 4567888888888888753211 235677777777777776655444322 45
Q ss_pred CCcccEEEeeCCCC--CCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccE
Q 043317 111 TFQLKVLELANCSL--NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188 (700)
Q Consensus 111 ~~~L~~L~L~~n~l--~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 188 (700)
..+|++|-|.+..+ +.....+..++.+++|++|.|.+.. +++..+.+.. -.+.+.+
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq---------------~n~Dd~c~e~-------~s~~v~t 177 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ---------------LNLDDNCIED-------WSTEVLT 177 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh---------------hccccccccc-------cchhhhh
Confidence 55677777766666 4444555566666666666664321 0111111110 0112222
Q ss_pred EeCCCCcCcccc-ChhHHhhccCCcEEEccCCcCCcc-CCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcC
Q 043317 189 LDASSNNFIGTL-PQDMGTILKKLLVLDISNNHFEGN-IPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLS 266 (700)
Q Consensus 189 L~l~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 266 (700)
+....|...-.. -..+...++++..+-+..|.+... ....+..++.+.-|+|+.++|......+.+.+++.|..|.++
T Consensus 178 lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 178 LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 222222211000 011233466777787877766532 223445566677788888888665555556667777777777
Q ss_pred Cccccc
Q 043317 267 DNNFYG 272 (700)
Q Consensus 267 ~n~l~~ 272 (700)
++.+..
T Consensus 258 ~~Pl~d 263 (418)
T KOG2982|consen 258 ENPLSD 263 (418)
T ss_pred CCcccc
Confidence 777654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=6.4e-07 Score=83.61 Aligned_cols=183 Identities=21% Similarity=0.190 Sum_probs=100.9
Q ss_pred cCCcCcEEEcCCcccccccccc----cCCCCCCcEEEcccCccccccccc-------------ccCCCCCcEEEcccCcC
Q 043317 256 GCISLWFLDLSDNNFYGQFFSK----DLNLTQMEFLYLENNKFSGKIEEG-------------LLNSTKLYQLDISHNFL 318 (700)
Q Consensus 256 ~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~~~~L~~L~Ls~n~l 318 (700)
+||.|+..+||+|.+....|.. +..-+.|+.|.+++|.+.-..... ..+-+.|+..+...|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 4566666666666655444432 234456666666666554211111 12346777777777776
Q ss_pred CCCc----chhhcCCCCCcEEEcccCcCccc-----chhhccCCCCCCEEEccCccCcccCCCcc-----CCCCCcEEEc
Q 043317 319 SGHI----PHWMGNFSNLEILLMSNNCLEGN-----IPVQLLNHRTLKLLSVSENYLSGSMTSSF-----NLSSLKHLYV 384 (700)
Q Consensus 319 ~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~l 384 (700)
..-. ...+..-.+|+++.+..|.|.-. .-..+..+.+|+.||+..|.++....... .++.|++|.+
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 5211 11222335677777777766522 11223456777788887777764332221 3456777888
Q ss_pred cCCcCccCcchhhh------CCCCccEEECcCCcccccCChh-----h--hccCCCCEEecCCCccC
Q 043317 385 QKNALSGPIPDMLF------RSSKLMTLDLRGNNLEGQIPDQ-----I--CQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 385 ~~n~l~~~~~~~~~------~~~~L~~L~l~~N~l~~~~~~~-----~--~~l~~L~~L~Ls~N~l~ 438 (700)
.+|-++..-...+. ..++|..|...+|.+.+.+-.. + ..++-|..+.+.+|++.
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 77777654333322 2467777777777665332111 1 24556666666777765
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=9.5e-07 Score=83.61 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=85.9
Q ss_pred CCCCCCEEECCCCcCCcc--cchhccCCCCCCEEeCCCCcCCCCCChhhc-cCCCCCcEEEcccCccccccccCCCCCCC
Q 043317 36 YLSHLKVLDISHNQLSGS--LSSTITSLTSLEYLDLSYNNFEGPCPLSSL-ANHSKLEVLLLSSTNNMLLVKTENFLPTF 112 (700)
Q Consensus 36 ~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 112 (700)
..++++.+||.+|.|+.- +...+.++|.|++|+++.|.+...|. .+ ....+|++|.|.+....-.........++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 578999999999999843 45567899999999999999986554 33 46779999999876544333333456778
Q ss_pred cccEEEeeCCCCCCcC---hhhcCC-CCCCEEEccCCCCCccCc-hHHhhcCCCCCEEEccCCcCc
Q 043317 113 QLKVLELANCSLNVVP---TFLLHQ-YDLKYLDLSLNNLVGDFP-SWMLQNNTKLEVLFLTNNSFT 173 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p---~~l~~~-~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~ 173 (700)
.+++|+++.|++..+- ...... +.+++|++..|....-.. ..+..-++++..+.+..|.+.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence 8999999999653221 111111 245555555543220000 001123456666666666554
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=4.3e-06 Score=56.59 Aligned_cols=36 Identities=42% Similarity=0.688 Sum_probs=17.5
Q ss_pred CCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc
Q 043317 542 KIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578 (700)
Q Consensus 542 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 578 (700)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555555555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=1e-05 Score=54.69 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=29.2
Q ss_pred cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCc
Q 043317 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFP 152 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~ 152 (700)
+|++|++++|+++.+|..+.++++|++|++++|+++ .++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 678888888888888877888888888888888877 444
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=4.7e-07 Score=75.65 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=15.2
Q ss_pred CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccc
Q 043317 376 LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE 414 (700)
Q Consensus 376 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 414 (700)
++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 99 m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 334444444444443 23333333444444444444433
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.3e-05 Score=70.43 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred CCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccE
Q 043317 37 LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV 116 (700)
Q Consensus 37 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 116 (700)
+.+...+||++|.+... ..|..++.|.+|.+++|+|+. +....-..+++|+.|.+.+|++....+......+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 34677889999988743 357788899999999999884 443444556788888888877655444555677778888
Q ss_pred EEeeCCCCCCcCh----hhcCCCCCCEEEccCCCC
Q 043317 117 LELANCSLNVVPT----FLLHQYDLKYLDLSLNNL 147 (700)
Q Consensus 117 L~L~~n~l~~~p~----~l~~~~~L~~L~Ls~n~l 147 (700)
|.+-+|....-+. .+..+++|++||+..-.-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8888887744432 345677888888766543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=6e-06 Score=91.74 Aligned_cols=145 Identities=23% Similarity=0.281 Sum_probs=88.9
Q ss_pred CCCCEEEeCccC------Cccc-cCCCCCCEEECCCCcCCcc-cchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCc
Q 043317 19 TILQVLDLSGSS------SNCL-KYLSHLKVLDISHNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLE 90 (700)
Q Consensus 19 ~~L~~L~Lsg~~------~~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 90 (700)
++|++||++|.- |..+ ..+|+|++|.+++-.+... .-....++++|+.||+|+.+++.. ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 568888888652 1222 3578888888888766533 234456788888888888888743 3577788888
Q ss_pred EEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChh-------hcCCCCCCEEEccCCCCCccCchHHhhcCCCCC
Q 043317 91 VLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTF-------LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLE 163 (700)
Q Consensus 91 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~-------l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 163 (700)
+|.+.+-.+........+..+++|++||+|.......+.. -..+++|+.||.|++.+...+-+.+...-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 8877643332222222455677777777777666333311 123667777777777776555555544444454
Q ss_pred EEE
Q 043317 164 VLF 166 (700)
Q Consensus 164 ~L~ 166 (700)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=9.4e-07 Score=87.68 Aligned_cols=107 Identities=23% Similarity=0.156 Sum_probs=54.2
Q ss_pred CCCCEEECCCCcCCccc--chhccCCCCCCEEeCCCCc-CCCCCChhhccCCCCCcEEEcccCccccccccC-CCCCCCc
Q 043317 38 SHLKVLDISHNQLSGSL--SSTITSLTSLEYLDLSYNN-FEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE-NFLPTFQ 113 (700)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~ 113 (700)
..|+.|.+.++.-.+.- -..-.+++++++|++.++. +++..-...-..+++|++|++..|..++...-. ...++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46677777777544332 2233567777777777765 222111122345677777777665443332222 1234566
Q ss_pred ccEEEeeCCCC---CCcChhhcCCCCCCEEEccC
Q 043317 114 LKVLELANCSL---NVVPTFLLHQYDLKYLDLSL 144 (700)
Q Consensus 114 L~~L~L~~n~l---~~~p~~l~~~~~L~~L~Ls~ 144 (700)
|+++++++|.- ..+......+..++.+.+.+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 66666666643 11222233444445554444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=8.4e-05 Score=76.06 Aligned_cols=28 Identities=18% Similarity=0.479 Sum_probs=14.8
Q ss_pred cccEEEeeCC-CCCCcChhhcCCCCCCEEEccCCC
Q 043317 113 QLKVLELANC-SLNVVPTFLLHQYDLKYLDLSLNN 146 (700)
Q Consensus 113 ~L~~L~L~~n-~l~~~p~~l~~~~~L~~L~Ls~n~ 146 (700)
+|++|++++| .+..+|. +|+.|+++.+.
T Consensus 95 nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 95 GLEKLTVCHCPEISGLPE------SVRSLEIKGSA 123 (426)
T ss_pred hhhheEccCccccccccc------ccceEEeCCCC
Confidence 5666666665 4444443 35555555544
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00013 Score=74.79 Aligned_cols=76 Identities=9% Similarity=0.133 Sum_probs=52.1
Q ss_pred ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC-cccccCChhhhccCCCC
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN-NLEGQIPDQICQLRRLG 428 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~ 428 (700)
+..+..++.|++++|.++..+ . -.++|++|.+++|.-...+|+.+. .+|++|++++| .+. .+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence 455688999999999887665 2 145799999988654446666553 58889999888 454 4443 466
Q ss_pred EEecCCCcc
Q 043317 429 MMDLSHNRF 437 (700)
Q Consensus 429 ~L~Ls~N~l 437 (700)
.|+++.+..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 677766543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=0.00017 Score=62.87 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=51.0
Q ss_pred cccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCC
Q 043317 33 CLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF 112 (700)
Q Consensus 33 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 112 (700)
+|.++++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++...|.++++++.+.+.. ....++...|..+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc--cccccccccccccc
Confidence 455556666666653 355455556666666777766654 43 34445566666666666643 22344444566666
Q ss_pred cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCC
Q 043317 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKL 162 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 162 (700)
+|+.+++..+ +..++.....-.+|+.+.+.. .+. .++...|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT-T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCCCceEEEECC-Ccc-EECCccccccccC
Confidence 6666666543 444443333223666666654 333 4555555555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.00012 Score=65.98 Aligned_cols=85 Identities=24% Similarity=0.194 Sum_probs=40.7
Q ss_pred cCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCc-chhhhCCCCccEEECcCCcccccC---ChhhhccC
Q 043317 351 LNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPI-PDMLFRSSKLMTLDLRGNNLEGQI---PDQICQLR 425 (700)
Q Consensus 351 ~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~~~---~~~~~~l~ 425 (700)
..++.|.+|.+++|.|+.+.+..- -+++|+.|.+.+|.+.... -.-+..|+.|++|.+-+|+++..- --.++.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 334444444444444444444333 3444555555555443110 012344566666666666654221 11345667
Q ss_pred CCCEEecCCC
Q 043317 426 RLGMMDLSHN 435 (700)
Q Consensus 426 ~L~~L~Ls~N 435 (700)
+|+.||.+.=
T Consensus 141 ~l~~LDF~kV 150 (233)
T KOG1644|consen 141 SLRTLDFQKV 150 (233)
T ss_pred cceEeehhhh
Confidence 7777776543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=5e-05 Score=84.55 Aligned_cols=106 Identities=24% Similarity=0.175 Sum_probs=56.0
Q ss_pred cccEEEeeCCCC--CCcChhhc-CCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317 113 QLKVLELANCSL--NVVPTFLL-HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189 (700)
Q Consensus 113 ~L~~L~L~~n~l--~~~p~~l~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 189 (700)
+|++|+++|... ...|..++ .+|+|+.|.+++-.+...--..++.++++|..||+++.+++.. ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 566666666554 33444443 4567777777666554222223445666666666666666532 334455555555
Q ss_pred eCCCCcCcc-ccChhHHhhccCCcEEEccCCcC
Q 043317 190 DASSNNFIG-TLPQDMGTILKKLLVLDISNNHF 221 (700)
Q Consensus 190 ~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i 221 (700)
.+.+-.+.. ..-.++|. +++|+.||+|..+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKN 232 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeecccccc
Confidence 555443331 11124444 56666666665543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00048 Score=60.06 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=20.1
Q ss_pred cCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcc
Q 043317 278 DLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338 (700)
Q Consensus 278 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 338 (700)
|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +......+|..+++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 33444444444442 233333334444444444444443 332333344444444444443
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.44 E-value=1.3e-05 Score=79.91 Aligned_cols=274 Identities=17% Similarity=0.105 Sum_probs=143.4
Q ss_pred CCCEEEeCccCC-------ccccCCCCCCEEECCCCc-CCcccchhc-cCCCCCCEEeCCCC-cCCCCCChhhccCCCCC
Q 043317 20 ILQVLDLSGSSS-------NCLKYLSHLKVLDISHNQ-LSGSLSSTI-TSLTSLEYLDLSYN-NFEGPCPLSSLANHSKL 89 (700)
Q Consensus 20 ~L~~L~Lsg~~~-------~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L 89 (700)
.|+.|.+.|..+ ..-.+++++++|++.++. ++...-..+ ..+++|++|++..+ .+++..-...-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 467777775532 233578888888888886 332222223 56889999999884 35433222234578899
Q ss_pred cEEEcccCccccccccC-CCCCCCcccEEEeeCCCCCC---cChhhcCCCCCCEEEccCCCCCccCchH-HhhcCCCCCE
Q 043317 90 EVLLLSSTNNMLLVKTE-NFLPTFQLKVLELANCSLNV---VPTFLLHQYDLKYLDLSLNNLVGDFPSW-MLQNNTKLEV 164 (700)
Q Consensus 90 ~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~---~p~~l~~~~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~ 164 (700)
+++++++|..+..-... -+.++..++.+.+.+|.-.. +-..-..+..+..+++..+...+....+ +...+.+||.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 99999988755442211 23455566666666653211 1111123344555555444322122211 1234556677
Q ss_pred EEccCCcCcc-cCCCC-CCCCCCccEEeCCCCcCccc-cChhHHhhccCCcEEEccCCcCC--ccCCccccCCCCCcEEE
Q 043317 165 LFLTNNSFTG-NLRLP-NTKHDFLHHLDASSNNFIGT-LPQDMGTILKKLLVLDISNNHFE--GNIPSSVGEMKELIILH 239 (700)
Q Consensus 165 L~L~~n~l~~-~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~ 239 (700)
|..+++...+ ..-.. ..+..+|+.+.++.++--+. --..++...+.|+.+++..+... +.+...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 7766654321 11111 13456677777766652211 11223344556777777666433 11222223566777777
Q ss_pred ccCccCCCCCchHHH----hcCCcCcEEEcCCccccc-ccccccCCCCCCcEEEcccCc
Q 043317 240 LSKNNFSEDFSTPFL----TGCISLWFLDLSDNNFYG-QFFSKDLNLTQMEFLYLENNK 293 (700)
Q Consensus 240 L~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 293 (700)
++++..........+ .+...|..+.++++.... .....+..+++|+.+++..++
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 776643322111111 234567777777776432 333445566777777776665
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.0002 Score=67.41 Aligned_cols=113 Identities=26% Similarity=0.253 Sum_probs=53.0
Q ss_pred CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCC--cCCCCCChhhccCCCCCcEEEcccCccccccccCC
Q 043317 30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYN--NFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN 107 (700)
Q Consensus 30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 107 (700)
+......+..|+.|++.+..++.. ..|-.+++|+.|++|.| ++.+.++ .....+++|+++++++|.....-....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccccccccch
Confidence 333344445555555555555422 23445555666666666 3332222 123334566666666554322111112
Q ss_pred CCCCCcccEEEeeCCCCCCcC----hhhcCCCCCCEEEccCC
Q 043317 108 FLPTFQLKVLELANCSLNVVP----TFLLHQYDLKYLDLSLN 145 (700)
Q Consensus 108 ~~~~~~L~~L~L~~n~l~~~p----~~l~~~~~L~~L~Ls~n 145 (700)
...+.+|..|++.+|..+.+- ..+.-+++|++||-...
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 334445666666666653332 12334567777764433
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.78 E-value=0.00024 Score=77.82 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=17.3
Q ss_pred ccEEECcCCccccc-CChhhhc-cCCCCEEecCCCcc
Q 043317 403 LMTLDLRGNNLEGQ-IPDQICQ-LRRLGMMDLSHNRF 437 (700)
Q Consensus 403 L~~L~l~~N~l~~~-~~~~~~~-l~~L~~L~Ls~N~l 437 (700)
++.|+++.+..... .-..... +..+..+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 66666666654311 1111111 55566666666654
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00095 Score=63.01 Aligned_cols=113 Identities=22% Similarity=0.170 Sum_probs=76.0
Q ss_pred cchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCC-CCCCCcccEEEeeCCCCCCcC--hh
Q 043317 54 LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN-FLPTFQLKVLELANCSLNVVP--TF 130 (700)
Q Consensus 54 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~p--~~ 130 (700)
+......+..|+.|.+.+..++. ...+-.+++|+.|.++.|+......... ...+++|+++++++|++..+. ..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 44555667778888887777652 2357788999999999885433333222 234589999999999986431 22
Q ss_pred hcCCCCCCEEEccCCCCCc--cCchHHhhcCCCCCEEEccC
Q 043317 131 LLHQYDLKYLDLSLNNLVG--DFPSWMLQNNTKLEVLFLTN 169 (700)
Q Consensus 131 l~~~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~ 169 (700)
+..+.+|..|++.+|..+. .--..+|.-+++|++|+-..
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 4567789999999987763 11234566778888776543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00018 Score=67.96 Aligned_cols=83 Identities=22% Similarity=0.167 Sum_probs=51.0
Q ss_pred ccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEc
Q 043317 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDL 265 (700)
Q Consensus 186 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 265 (700)
.+.|+.-++.+.. -.+...++.|+.|.|+-|+|+..- .+..+++|++|+|..|.|.+...-.++.++++|+.|.|
T Consensus 21 vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccH---HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4445555555441 234444667777777777776433 36677777777777777766555555666677777777
Q ss_pred CCcccccc
Q 043317 266 SDNNFYGQ 273 (700)
Q Consensus 266 ~~n~l~~~ 273 (700)
..|.-.+.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 66655443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.00 E-value=0.002 Score=70.59 Aligned_cols=111 Identities=28% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCCCCEEECCCCcCCcc--cchhccCCCCCCEEeCCCC-cCCCCCC---hhhccCCCCCcEEEcccCccccccccCCCC-
Q 043317 37 LSHLKVLDISHNQLSGS--LSSTITSLTSLEYLDLSYN-NFEGPCP---LSSLANHSKLEVLLLSSTNNMLLVKTENFL- 109 (700)
Q Consensus 37 l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~- 109 (700)
.+.|+.|.+..+.-... .-.....+++|+.|+++++ ......+ ......+++|+.|+++.+..........+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532222 2234455666666666652 1110111 112334456666666655432222211111
Q ss_pred CCCcccEEEeeCCC-CC--CcChhhcCCCCCCEEEccCCCC
Q 043317 110 PTFQLKVLELANCS-LN--VVPTFLLHQYDLKYLDLSLNNL 147 (700)
Q Consensus 110 ~~~~L~~L~L~~n~-l~--~~p~~l~~~~~L~~L~Ls~n~l 147 (700)
.+++|++|.+.+|. ++ .+-.....+++|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 14456666555554 32 1222233455566666665543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.00031 Score=66.40 Aligned_cols=87 Identities=22% Similarity=0.148 Sum_probs=50.4
Q ss_pred CCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch-hhccCCCCCCEE
Q 043317 281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP-VQLLNHRTLKLL 359 (700)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L 359 (700)
+.+.+.|+..+|.++.+ .....++.|+.|.||-|+|+..- .+..|++|++|+|..|.|..... .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44566677777776643 23445677777777777776442 35666777777777776653211 124555666666
Q ss_pred EccCccCcccCC
Q 043317 360 SVSENYLSGSMT 371 (700)
Q Consensus 360 ~l~~n~l~~~~~ 371 (700)
+|..|.-.+...
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 666655544433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0035 Score=35.14 Aligned_cols=18 Identities=50% Similarity=0.824 Sum_probs=8.1
Q ss_pred CCEEeCCCCcCcccCcccc
Q 043317 567 IESLDLSNNRLSGQIPAQL 585 (700)
Q Consensus 567 L~~L~Ls~N~l~~~~p~~l 585 (700)
|++|||++|+++ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.35 E-value=0.0069 Score=33.92 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=13.7
Q ss_pred CCCEEECCCCcCCcccchhccC
Q 043317 39 HLKVLDISHNQLSGSLSSTITS 60 (700)
Q Consensus 39 ~L~~L~Ls~n~i~~~~~~~~~~ 60 (700)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 55555554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.19 E-value=0.06 Score=27.86 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=5.4
Q ss_pred cccEEEeeCCCCCCc
Q 043317 113 QLKVLELANCSLNVV 127 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~ 127 (700)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.85 E-value=0.0045 Score=57.21 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN 595 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 595 (700)
+...+.||++.|++. ..-..|.-++.+..|+++.|++. ..|..++.+..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 356677899999887 44556777888888999999988 78888888889999999888888 6688889999999999
Q ss_pred ccCCcCc
Q 043317 596 VSYNNLS 602 (700)
Q Consensus 596 ls~N~l~ 602 (700)
+-.|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888865
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.20 E-value=0.0014 Score=69.93 Aligned_cols=85 Identities=25% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCcEEEccCccCCCCCchHH---HhcCCcCcEEEcCCcccccccccc----cCCC-CCCcEEEcccCccccc----cccc
Q 043317 234 ELIILHLSKNNFSEDFSTPF---LTGCISLWFLDLSDNNFYGQFFSK----DLNL-TQMEFLYLENNKFSGK----IEEG 301 (700)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~ 301 (700)
.+..+.+.+|.+........ +...+.|+.|+++.|.+.+..... +... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 47778888888765433332 233456777777777775322211 1111 3345555555555532 2233
Q ss_pred ccCCCCCcEEEcccCcC
Q 043317 302 LLNSTKLYQLDISHNFL 318 (700)
Q Consensus 302 ~~~~~~L~~L~Ls~n~l 318 (700)
+.....++.+|++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 34455566666666654
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.97 E-value=0.0025 Score=68.13 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=20.1
Q ss_pred CCCCEEEccCccCcccCCCcc-----CCCCCcEEEccCCcCc
Q 043317 354 RTLKLLSVSENYLSGSMTSSF-----NLSSLKHLYVQKNALS 390 (700)
Q Consensus 354 ~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~l~~n~l~ 390 (700)
..++.++++.|.|+....... .++.++++.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 345555555555554332221 3556677777777664
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.78 E-value=0.13 Score=29.99 Aligned_cols=16 Identities=50% Similarity=0.626 Sum_probs=8.6
Q ss_pred cCCCEEeCCCCcCccc
Q 043317 565 QMIESLDLSNNRLSGQ 580 (700)
Q Consensus 565 ~~L~~L~Ls~N~l~~~ 580 (700)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555555555555543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.78 E-value=0.13 Score=29.99 Aligned_cols=16 Identities=50% Similarity=0.626 Sum_probs=8.6
Q ss_pred cCCCEEeCCCCcCccc
Q 043317 565 QMIESLDLSNNRLSGQ 580 (700)
Q Consensus 565 ~~L~~L~Ls~N~l~~~ 580 (700)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555555555555543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.56 E-value=0.26 Score=28.71 Aligned_cols=16 Identities=50% Similarity=0.673 Sum_probs=7.9
Q ss_pred CCCCEEECCCCcCCcc
Q 043317 38 SHLKVLDISHNQLSGS 53 (700)
Q Consensus 38 ~~L~~L~Ls~n~i~~~ 53 (700)
++|++|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.56 E-value=0.26 Score=28.71 Aligned_cols=16 Identities=50% Similarity=0.673 Sum_probs=7.9
Q ss_pred CCCCEEECCCCcCCcc
Q 043317 38 SHLKVLDISHNQLSGS 53 (700)
Q Consensus 38 ~~L~~L~Ls~n~i~~~ 53 (700)
++|++|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.47 E-value=0.031 Score=51.82 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=51.2
Q ss_pred ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc
Q 043317 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 578 (700)
++.+..||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++.++.+++-.|.+.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 456677888888887 77888888888888888888887 78888999999999999988876
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.12 E-value=0.069 Score=48.69 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=19.5
Q ss_pred CCCEEECCCCcCCcccchhccCCCCCCEEeCCCCc
Q 043317 39 HLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNN 73 (700)
Q Consensus 39 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 73 (700)
.++.+|-++..|..+--+.+.+++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 34555666665555544555555555655555554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.56 E-value=0.14 Score=46.88 Aligned_cols=81 Identities=21% Similarity=0.147 Sum_probs=43.1
Q ss_pred cCcEEEcCCcccccccccccCCCCCCcEEEcccCccccc-cccccc-CCCCCcEEEcccC-cCCCCcchhhcCCCCCcEE
Q 043317 259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK-IEEGLL-NSTKLYQLDISHN-FLSGHIPHWMGNFSNLEIL 335 (700)
Q Consensus 259 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 335 (700)
.++.+|.++..|.....+.+.+++.++.|.+.+|+--+. .-+.++ -.++|+.|++++| +|++..-.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345555555555555555555666666666666642210 000111 2356677777766 4555555556666666666
Q ss_pred Eccc
Q 043317 336 LMSN 339 (700)
Q Consensus 336 ~L~~ 339 (700)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6544
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.62 E-value=0.36 Score=27.51 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=4.6
Q ss_pred CccEEECcCCccc
Q 043317 402 KLMTLDLRGNNLE 414 (700)
Q Consensus 402 ~L~~L~l~~N~l~ 414 (700)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.58 E-value=1.7 Score=25.40 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=8.6
Q ss_pred cCCCEEeCCCCcCc
Q 043317 565 QMIESLDLSNNRLS 578 (700)
Q Consensus 565 ~~L~~L~Ls~N~l~ 578 (700)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.72 E-value=3.2 Score=24.20 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=10.0
Q ss_pred cccEEEeeCCCCCCcCh
Q 043317 113 QLKVLELANCSLNVVPT 129 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~ 129 (700)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666655554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.55 E-value=4.6 Score=23.99 Aligned_cols=14 Identities=50% Similarity=0.748 Sum_probs=8.7
Q ss_pred cCCCEEeCCCCcCc
Q 043317 565 QMIESLDLSNNRLS 578 (700)
Q Consensus 565 ~~L~~L~Ls~N~l~ 578 (700)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.08 E-value=37 Score=35.78 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=36.7
Q ss_pred CCcEEEccCCcCccCcchh---hhCCCCccEEECcCCcccc----cCChhhhccCCCCEEecCCCccC
Q 043317 378 SLKHLYVQKNALSGPIPDM---LFRSSKLMTLDLRGNNLEG----QIPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 378 ~L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
-+..+.++.|.+....... ...-+.+..|++++|.... .+|.+...-.+++.+..+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3666777777775433222 2334678888998887642 23445554556666666666543
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=52.80 E-value=5.8 Score=50.81 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=15.8
Q ss_pred eCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317 571 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 571 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 602 (700)
||++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 34455555444444444555555555555554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.19 E-value=14 Score=39.69 Aligned_cols=35 Identities=34% Similarity=0.311 Sum_probs=15.0
Q ss_pred CCCCEEEccCCCCCccCc--hHHhhcCCCCCEEEccCC
Q 043317 135 YDLKYLDLSLNNLVGDFP--SWMLQNNTKLEVLFLTNN 170 (700)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n 170 (700)
+.+..+.|++|++. .+. ..+.+..++|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 34445555555543 111 112233444555555555
No 91
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=41.23 E-value=29 Score=27.35 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=18.0
Q ss_pred hhhhhhheeehhhhhhhhhhHHHhhhcchh
Q 043317 658 MVSLYWSFGASYVTVILGLFAILWINSFWR 687 (700)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (700)
..|.|++.|.|+++.+++++.+.+.+.+|+
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 456677767666666555555555555555
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.66 E-value=20 Score=38.53 Aligned_cols=13 Identities=31% Similarity=0.238 Sum_probs=7.2
Q ss_pred CCcEEEcccCcCC
Q 043317 307 KLYQLDISHNFLS 319 (700)
Q Consensus 307 ~L~~L~Ls~n~l~ 319 (700)
.|++|-+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 4555556666554
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.83 E-value=28 Score=20.01 Aligned_cols=12 Identities=33% Similarity=0.288 Sum_probs=5.6
Q ss_pred CCCcEEEcccCc
Q 043317 87 SKLEVLLLSSTN 98 (700)
Q Consensus 87 ~~L~~L~l~~n~ 98 (700)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 344444444443
No 94
>PRK00523 hypothetical protein; Provisional
Probab=30.70 E-value=35 Score=25.58 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=9.2
Q ss_pred hhhhhHHHhhhcchhhHHH
Q 043317 673 ILGLFAILWINSFWRKRWF 691 (700)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~ 691 (700)
+.++++.+++.+++-++|+
T Consensus 16 i~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 16 IVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.37 E-value=30 Score=44.83 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.3
Q ss_pred ECCCCcCcccCCccccCcCCCcEEeCCCccCc
Q 043317 523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLS 554 (700)
Q Consensus 523 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 554 (700)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999888888899999999999999876
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.08 E-value=27 Score=29.53 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=2.6
Q ss_pred hhhcchhhH
Q 043317 681 WINSFWRKR 689 (700)
Q Consensus 681 ~~~~~~~~~ 689 (700)
|+.+|.|+|
T Consensus 86 y~irR~~Kk 94 (122)
T PF01102_consen 86 YCIRRLRKK 94 (122)
T ss_dssp HHHHHHS--
T ss_pred HHHHHHhcc
Confidence 333333333
No 97
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=28.01 E-value=37 Score=22.55 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=13.3
Q ss_pred hhheeehhhhhhhhhhHHHhhhc
Q 043317 662 YWSFGASYVTVILGLFAILWINS 684 (700)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~ 684 (700)
|+-++.|+++.+++.+.+.++++
T Consensus 8 ~L~~~F~~lIC~Fl~~~~~F~~F 30 (54)
T PF06716_consen 8 YLLLAFGFLICLFLFCLVVFIWF 30 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667776666555555443
No 98
>PF15179 Myc_target_1: Myc target protein 1
Probab=26.24 E-value=35 Score=30.63 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=17.4
Q ss_pred hhhhhhheeehhhhhhhhhhHHHhhh
Q 043317 658 MVSLYWSFGASYVTVILGLFAILWIN 683 (700)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (700)
++.|.+++++|+++|.++.+.+.|.-
T Consensus 22 IlaF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666666654
No 99
>PRK01844 hypothetical protein; Provisional
Probab=25.66 E-value=47 Score=24.91 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=8.1
Q ss_pred hhhHHHhhhcchhhHHH
Q 043317 675 GLFAILWINSFWRKRWF 691 (700)
Q Consensus 675 ~~~~~~~~~~~~~~~~~ 691 (700)
++++.+++.+++-++|+
T Consensus 17 G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 17 GVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555545544
No 100
>PF15102 TMEM154: TMEM154 protein family
Probab=24.51 E-value=16 Score=31.74 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=7.3
Q ss_pred hhhhhHHHhhhcchhh
Q 043317 673 ILGLFAILWINSFWRK 688 (700)
Q Consensus 673 ~~~~~~~~~~~~~~~~ 688 (700)
++.+++++++.+|||.
T Consensus 72 Ll~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHheeEEeeccc
Confidence 3333444444455554
Done!