Query 043317
Match_columns 700
No_of_seqs 766 out of 5118
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 06:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.4E-76 1.5E-80 677.0 43.3 619 13-641 94-755 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.4E-67 1.5E-71 602.2 40.5 604 10-623 68-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-58 1.6E-62 523.0 47.8 572 7-606 15-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2E-56 6.8E-61 509.6 44.1 579 22-628 7-625 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-56 4.8E-61 520.3 37.6 549 7-641 15-595 (844)
6 3t6q_A CD180 antigen; protein- 100.0 2.5E-55 8.6E-60 493.8 46.1 519 7-606 23-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.9E-55 6.6E-60 494.7 38.5 524 23-627 16-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-54 5.3E-59 487.3 40.2 517 7-607 22-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-54 2.4E-58 497.7 42.0 516 30-630 19-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-53 9.1E-58 477.3 37.6 525 21-629 13-562 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 5.5E-49 1.9E-53 439.2 37.2 504 22-608 10-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 3.1E-48 1.1E-52 433.1 37.7 495 7-583 18-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-48 7.2E-53 432.2 34.4 480 30-611 20-519 (549)
14 4eco_A Uncharacterized protein 100.0 2.5E-49 8.7E-54 444.2 20.3 379 38-445 81-532 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-47 8.7E-52 420.3 28.3 456 41-606 3-485 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-46 7.4E-51 416.0 34.7 479 42-629 9-514 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 2E-47 6.7E-52 435.1 25.5 467 38-602 323-864 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-45 6.6E-50 416.3 39.0 517 8-605 43-583 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-46 1.6E-50 410.1 26.8 452 22-582 3-485 (520)
20 4eco_A Uncharacterized protein 100.0 1.4E-46 4.9E-51 421.9 22.8 238 194-438 193-470 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 3.3E-45 1.1E-49 416.8 26.8 416 112-606 323-844 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 7.3E-44 2.5E-48 403.3 35.9 516 30-628 46-583 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-43 5.3E-48 393.2 28.9 463 36-607 29-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.9E-43 3E-47 387.1 26.1 458 18-583 30-515 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 6.8E-42 2.3E-46 370.5 27.1 391 114-614 12-420 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1E-40 3.5E-45 361.2 29.7 388 91-582 14-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.1E-41 3.8E-46 365.4 20.8 403 36-607 9-416 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2E-39 6.9E-44 347.9 25.4 409 12-607 5-434 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 8.7E-38 3E-42 340.1 23.2 321 187-580 14-335 (477)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-37 8.1E-42 332.1 25.5 353 110-607 40-392 (457)
31 1o6v_A Internalin A; bacterial 100.0 5.4E-36 1.9E-40 324.4 34.7 345 111-579 45-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 9.9E-36 3.4E-40 322.3 35.3 345 135-604 46-390 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-36 3.9E-41 326.8 26.0 357 28-447 32-396 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 1.6E-36 5.6E-41 330.1 25.8 278 163-445 14-292 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 9.8E-35 3.3E-39 307.3 27.7 332 184-627 45-376 (390)
36 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-35 5.4E-40 302.5 20.2 258 306-634 50-312 (313)
37 3oja_B Anopheles plasmodium-re 100.0 5.3E-35 1.8E-39 326.2 24.6 335 183-629 50-384 (597)
38 4fmz_A Internalin; leucine ric 100.0 2.9E-33 9.9E-38 291.3 31.3 304 208-602 43-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 1.9E-32 6.5E-37 285.1 31.1 305 110-438 42-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 7.3E-33 2.5E-37 292.9 28.3 310 110-439 43-353 (390)
41 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-34 2.2E-38 290.7 18.1 252 282-604 50-307 (313)
42 3oja_B Anopheles plasmodium-re 100.0 1E-32 3.4E-37 307.8 27.6 314 158-582 49-362 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 7E-35 2.4E-39 316.1 5.7 358 184-604 3-413 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 4.8E-35 1.6E-39 317.4 4.5 386 113-602 4-440 (461)
45 1xku_A Decorin; proteoglycan, 100.0 3.4E-31 1.2E-35 273.4 27.6 267 259-600 53-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-31 5.5E-36 275.9 24.9 287 234-600 34-331 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-31 5.9E-36 275.7 24.5 287 211-576 35-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 8E-31 2.7E-35 270.6 28.8 289 185-576 32-330 (330)
49 2z80_A TOLL-like receptor 2, v 100.0 1E-29 3.5E-34 264.8 16.7 283 232-607 30-319 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 1.2E-29 4E-34 264.3 17.0 283 208-582 30-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 5E-29 1.7E-33 254.2 20.8 250 286-606 11-265 (306)
52 3ogk_B Coronatine-insensitive 100.0 6.4E-31 2.2E-35 294.4 7.4 299 133-434 110-445 (592)
53 3ogk_B Coronatine-insensitive 100.0 5.8E-31 2E-35 294.8 6.7 401 12-439 66-527 (592)
54 3zyj_A Leucine-rich repeat-con 100.0 5.7E-28 1.9E-32 259.4 24.6 248 284-604 45-294 (440)
55 2z66_A Variable lymphocyte rec 100.0 1E-28 3.5E-33 251.9 17.8 273 262-606 11-291 (306)
56 3zyi_A Leucine-rich repeat-con 100.0 6.3E-28 2.1E-32 260.0 24.4 249 284-605 56-306 (452)
57 4fcg_A Uncharacterized protein 100.0 6.4E-28 2.2E-32 247.6 19.3 235 281-602 80-314 (328)
58 4fcg_A Uncharacterized protein 100.0 1.4E-27 4.6E-32 245.2 21.4 235 257-579 80-315 (328)
59 3o53_A Protein LRIM1, AGAP0063 100.0 2.1E-29 7.3E-34 257.9 6.9 266 261-607 13-281 (317)
60 1ozn_A Reticulon 4 receptor; N 100.0 6.1E-28 2.1E-32 243.4 17.4 207 331-605 33-241 (285)
61 1ozn_A Reticulon 4 receptor; N 100.0 6.5E-28 2.2E-32 243.2 17.6 251 285-607 14-266 (285)
62 1wwl_A Monocyte differentiatio 99.9 3.5E-29 1.2E-33 255.7 4.8 248 281-603 42-310 (312)
63 3zyj_A Leucine-rich repeat-con 99.9 1.2E-26 4.1E-31 249.1 23.6 247 235-578 45-292 (440)
64 2p1m_B Transport inhibitor res 99.9 3.1E-29 1.1E-33 280.8 3.3 379 133-602 103-519 (594)
65 3zyi_A Leucine-rich repeat-con 99.9 1.2E-26 4.1E-31 250.0 23.2 248 235-578 56-303 (452)
66 1wwl_A Monocyte differentiatio 99.9 2.6E-28 8.7E-33 249.3 6.5 251 228-579 38-310 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-27 9.2E-32 242.3 14.0 244 283-606 11-255 (317)
68 3oja_A Leucine-rich immune mol 99.9 1.6E-27 5.4E-32 258.1 11.2 235 282-597 34-270 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-25 4.2E-30 247.9 26.3 269 209-589 40-308 (622)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-25 8.3E-30 245.6 26.6 266 113-423 41-306 (622)
71 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.9E-33 276.3 -2.2 228 208-438 264-519 (594)
72 3oja_A Leucine-rich immune mol 99.9 1.7E-26 5.9E-31 249.9 14.8 223 304-606 32-255 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 1.1E-25 3.7E-30 225.8 17.7 212 331-611 29-246 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.4E-29 216.7 20.8 211 306-582 28-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 5.2E-24 1.8E-28 212.5 22.5 204 332-606 18-222 (270)
76 2o6q_A Variable lymphocyte rec 99.9 3.7E-23 1.3E-27 206.3 22.3 204 307-581 17-221 (270)
77 3rfs_A Internalin B, repeat mo 99.9 4.6E-24 1.6E-28 213.1 15.5 203 327-607 38-240 (272)
78 1p9a_G Platelet glycoprotein I 99.9 1.9E-23 6.3E-28 210.2 19.5 204 302-603 6-209 (290)
79 1p9a_G Platelet glycoprotein I 99.9 3.9E-23 1.3E-27 207.9 20.6 206 350-628 6-211 (290)
80 3goz_A Leucine-rich repeat-con 99.9 1.2E-24 4E-29 227.1 9.1 176 263-438 3-209 (362)
81 3rfs_A Internalin B, repeat mo 99.9 1.9E-23 6.5E-28 208.6 16.8 210 302-590 37-247 (272)
82 3m19_A Variable lymphocyte rec 99.9 2.6E-23 8.9E-28 205.0 17.0 212 355-637 15-232 (251)
83 3goz_A Leucine-rich repeat-con 99.9 1.4E-24 4.8E-29 226.5 8.3 199 239-438 4-238 (362)
84 2ca6_A RAN GTPase-activating p 99.9 1E-24 3.6E-29 229.9 3.3 91 516-606 215-320 (386)
85 4glp_A Monocyte differentiatio 99.9 4.7E-23 1.6E-27 210.1 13.5 81 517-602 224-307 (310)
86 4glp_A Monocyte differentiatio 99.9 5.8E-23 2E-27 209.4 13.4 227 282-579 64-308 (310)
87 2ast_B S-phase kinase-associat 99.9 1.7E-23 5.7E-28 216.4 8.7 87 517-607 222-311 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 6E-27 197.6 14.2 129 307-437 32-168 (239)
89 2ca6_A RAN GTPase-activating p 99.9 1.9E-23 6.6E-28 220.2 6.9 243 199-442 23-320 (386)
90 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.8E-27 210.2 12.0 253 186-447 49-315 (336)
91 2xwt_C Thyrotropin receptor; s 99.9 6.6E-22 2.2E-26 193.5 15.8 195 331-599 32-236 (239)
92 1h6u_A Internalin H; cell adhe 99.9 1.1E-21 3.9E-26 199.2 17.3 126 303-437 38-163 (308)
93 1h6u_A Internalin H; cell adhe 99.9 1.8E-21 6.1E-26 197.8 17.3 104 328-438 39-142 (308)
94 3m19_A Variable lymphocyte rec 99.9 1.3E-20 4.4E-25 185.7 19.5 182 258-442 14-196 (251)
95 4ay9_X Follicle-stimulating ho 99.8 1.3E-20 4.5E-25 195.3 18.3 170 261-434 12-186 (350)
96 4ay9_X Follicle-stimulating ho 99.8 2.1E-20 7.1E-25 193.8 14.8 240 187-435 12-256 (350)
97 2o6s_A Variable lymphocyte rec 99.8 8.3E-20 2.8E-24 174.4 15.6 131 307-437 29-160 (208)
98 2o6s_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 175.1 14.4 174 357-607 10-183 (208)
99 3cvr_A Invasion plasmid antige 99.8 5.9E-20 2E-24 200.0 15.0 190 306-590 59-255 (571)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-19 5.6E-24 173.5 14.6 156 380-606 14-170 (220)
101 3cvr_A Invasion plasmid antige 99.8 1.9E-19 6.5E-24 196.0 16.5 197 282-566 59-255 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 2.5E-19 8.4E-24 172.3 15.0 154 380-604 14-167 (220)
103 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7.2E-24 187.0 13.5 86 517-602 112-202 (361)
104 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4.3E-23 168.5 16.1 157 379-607 21-177 (229)
105 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.4E-23 174.4 16.5 81 517-603 134-214 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.1E-23 166.2 15.8 156 357-582 14-170 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 3.6E-18 1.2E-22 164.1 15.8 154 357-580 14-167 (220)
108 1m9s_A Internalin B; cell inva 99.8 2E-18 6.9E-23 190.2 13.5 146 284-440 23-168 (605)
109 1h6t_A Internalin B; cell adhe 99.8 5.8E-18 2E-22 170.2 15.7 188 211-414 26-213 (291)
110 1m9s_A Internalin B; cell inva 99.8 9.5E-18 3.2E-22 184.9 18.0 169 258-439 21-189 (605)
111 1dce_A Protein (RAB geranylger 99.8 9.6E-21 3.3E-25 207.6 -6.6 77 517-595 486-566 (567)
112 3e6j_A Variable lymphocyte rec 99.7 2.6E-17 9.1E-22 159.2 16.6 155 284-442 21-176 (229)
113 2xot_A Amphoterin-induced prot 99.7 1.3E-17 4.5E-22 173.4 15.2 157 283-439 40-203 (361)
114 1w8a_A SLIT protein; signaling 99.7 3.7E-18 1.3E-22 160.3 9.1 91 516-606 53-143 (192)
115 1dce_A Protein (RAB geranylger 99.7 3E-20 1E-24 203.6 -6.3 203 280-572 347-567 (567)
116 4ezg_A Putative uncharacterize 99.7 8.7E-18 3E-22 158.6 11.3 82 517-602 112-194 (197)
117 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.6E-22 163.2 11.4 82 517-604 106-187 (263)
118 1w8a_A SLIT protein; signaling 99.7 3.3E-17 1.1E-21 153.8 11.2 132 380-582 11-143 (192)
119 4b8c_D Glucose-repressible alc 99.7 4.4E-18 1.5E-22 192.5 4.7 161 282-448 173-339 (727)
120 3sb4_A Hypothetical leucine ri 99.7 5.6E-18 1.9E-22 173.9 5.0 77 517-595 250-327 (329)
121 3sb4_A Hypothetical leucine ri 99.7 2E-17 6.8E-22 169.8 9.0 54 517-571 273-327 (329)
122 4ezg_A Putative uncharacterize 99.7 1.2E-16 4.1E-21 150.7 12.8 148 283-438 45-194 (197)
123 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.6E-22 162.5 8.3 150 279-440 38-187 (263)
124 4b8c_D Glucose-repressible alc 99.7 1.6E-17 5.6E-22 187.8 5.8 183 258-446 173-362 (727)
125 2wfh_A SLIT homolog 2 protein 99.7 8.6E-16 2.9E-20 144.0 13.9 88 517-604 54-141 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 4.4E-16 1.5E-20 142.9 10.3 134 400-603 23-161 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 5.7E-16 1.9E-20 142.1 10.2 137 376-583 23-164 (168)
128 2o6r_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 140.3 13.1 91 517-607 52-142 (177)
129 4fs7_A Uncharacterized protein 99.6 1E-14 3.5E-19 153.6 20.1 327 32-382 65-393 (394)
130 4fdw_A Leucine rich hypothetic 99.6 9.7E-15 3.3E-19 152.8 19.6 248 81-343 130-383 (401)
131 4fdw_A Leucine rich hypothetic 99.6 1.7E-14 5.9E-19 151.0 20.8 248 275-602 129-383 (401)
132 2je0_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 138.6 7.8 81 517-597 64-148 (149)
133 2wfh_A SLIT homolog 2 protein 99.6 6E-15 2E-19 138.2 13.7 129 380-580 13-141 (193)
134 2o6r_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 135.3 13.6 133 379-582 9-141 (177)
135 4fs7_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 148.9 20.0 335 49-406 58-393 (394)
136 2je0_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 134.0 9.2 126 306-433 17-148 (149)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6E-19 133.1 8.2 86 516-603 63-154 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 3.8E-16 1.3E-20 147.4 -3.8 134 394-602 41-185 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 5.5E-14 1.9E-18 129.8 10.8 132 302-438 15-153 (176)
140 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 125.3 10.6 110 502-611 15-124 (170)
141 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4.1E-20 144.0 -5.8 132 301-438 43-185 (198)
142 2r9u_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 123.6 10.9 108 501-608 17-124 (174)
143 4gt6_A Cell surface protein; l 99.4 1.3E-11 4.3E-16 129.8 23.1 107 276-387 282-388 (394)
144 3g39_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 120.9 11.6 66 517-582 54-119 (170)
145 4gt6_A Cell surface protein; l 99.4 2.9E-11 9.9E-16 127.1 23.8 332 54-437 55-390 (394)
146 2r9u_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 117.3 11.2 105 520-627 15-120 (174)
147 3un9_A NLR family member X1; l 99.3 1.2E-13 4.2E-18 143.0 0.5 86 517-602 155-252 (372)
148 3un9_A NLR family member X1; l 99.3 1.3E-13 4.3E-18 143.0 -0.9 187 208-414 71-283 (372)
149 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.2E-16 125.9 10.5 88 516-604 30-118 (347)
150 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 124.5 10.5 107 521-629 12-120 (347)
151 4h09_A Hypothetical leucine ri 99.2 1.6E-09 5.6E-14 113.1 20.6 310 35-374 43-352 (379)
152 4h09_A Hypothetical leucine ri 99.1 3.5E-09 1.2E-13 110.6 21.3 317 57-403 41-358 (379)
153 2ra8_A Uncharacterized protein 98.9 1.9E-09 6.5E-14 110.5 7.3 83 516-600 251-341 (362)
154 2ra8_A Uncharacterized protein 98.8 6.8E-09 2.3E-13 106.4 7.7 135 301-438 167-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 5.7E-08 2E-12 89.7 2.7 43 396-438 31-78 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.9E-12 87.6 4.5 63 376-438 92-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 2.4E-07 8.2E-12 89.8 5.6 64 516-581 169-236 (267)
158 3rw6_A Nuclear RNA export fact 98.4 1.5E-07 5E-12 91.3 3.2 84 522-607 148-238 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.3E-11 76.5 2.9 36 38-73 61-96 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.4E-05 4.6E-10 71.7 4.9 33 260-292 63-95 (176)
161 3rfe_A Platelet glycoprotein I 97.2 0.00062 2.1E-08 58.0 6.4 37 566-602 32-68 (130)
162 3rfe_A Platelet glycoprotein I 97.0 0.0013 4.3E-08 56.1 6.8 56 521-578 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00051 1.7E-08 62.7 4.5 38 400-437 125-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00071 2.4E-08 61.7 5.4 114 301-414 36-170 (197)
165 2lz0_A Uncharacterized protein 50.1 35 0.0012 26.7 6.0 46 49-96 7-52 (100)
166 2lz0_A Uncharacterized protein 43.5 24 0.00083 27.6 4.1 39 299-338 13-51 (100)
167 2l9u_A Receptor tyrosine-prote 25.9 27 0.00092 20.7 1.1 19 665-683 12-30 (40)
168 2k1k_A Ephrin type-A receptor 21.5 30 0.001 21.5 0.8 8 667-674 18-25 (38)
169 4gnt_B Carbohydrate-responsive 20.0 27 0.00091 18.7 0.3 13 685-697 10-22 (26)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-76 Score=677.01 Aligned_cols=619 Identities=32% Similarity=0.443 Sum_probs=374.0
Q ss_pred hhccCCCCCCEEEeC-----ccCCc--cccCCCCCCEEECCCCcCCcccchhc-cCCCCCCEEeCCCCcCCCCCChhh--
Q 043317 13 TGLANLTILQVLDLS-----GSSSN--CLKYLSHLKVLDISHNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSS-- 82 (700)
Q Consensus 13 ~~~~~l~~L~~L~Ls-----g~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-- 82 (700)
..|+++++|++|+|+ |.+|. .++++++|++|+|++|.+++..|..+ .++++|++|++++|++++..+...
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 445555555555555 22344 45555555555555555554444433 455555555555555543333111
Q ss_pred ccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCC-cChhhcCCCCCCEEEccCCCCCccCchHHhhcCCC
Q 043317 83 LANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV-VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTK 161 (700)
Q Consensus 83 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 161 (700)
+.++++|++|++++|...+..+ +..+++|++|++++|.+.. +|. +.++++|++|++++|.+++.+|..+ ..+++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~ 248 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTE 248 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSS
T ss_pred hccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCC
Confidence 4455555555555554433222 3566778888888888844 444 7788888888888888887777665 47888
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEcc
Q 043317 162 LEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLS 241 (700)
Q Consensus 162 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 241 (700)
|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++.+|..++++++|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 888888888887766554 677777777777777777777766645777777777777777777777777777777777
Q ss_pred CccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCC-CCcEEEcccCcccc------------------------
Q 043317 242 KNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLT-QMEFLYLENNKFSG------------------------ 296 (700)
Q Consensus 242 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~------------------------ 296 (700)
+|++++.+|...+..+++|++|++++|.+.+..|..+..++ +|+.|++++|++++
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 77777666666556677777777777777666665555444 45555555555544
Q ss_pred --cccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc
Q 043317 297 --KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF 374 (700)
Q Consensus 297 --~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 374 (700)
.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..+..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 444444444555555555555544444445555555555555555544445445455555555555555554444444
Q ss_pred -CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhh
Q 043317 375 -NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453 (700)
Q Consensus 375 -~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~ 453 (700)
.+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.....+..
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 4455555555555555445555555555555555555555455555555555555555555555555544433221110
Q ss_pred hhccccC-CCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc---ccccCccccccceEECCCCcC
Q 043317 454 ENVDLFG-GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY---ELYNGSNLNYMVGLDLSCNEL 529 (700)
Q Consensus 454 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~N~l 529 (700)
..... .............................................+.. .......++.|+.|||++|++
T Consensus 567 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 567 --ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp --CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred --hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 00000 000000000000000000000000000000000000000000000000 011124468899999999999
Q ss_pred cccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCC
Q 043317 530 TGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG 609 (700)
Q Consensus 530 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 609 (700)
+|.+|..++.+++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+..+++|++||+++|+++|.||..+
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCccCCCcCCcCcCCCCCCCCCCCCC
Q 043317 610 QYSTFDESSYRGNLYLCGPTINKSCNSAEETP 641 (700)
Q Consensus 610 ~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~~~ 641 (700)
+|.+++..+|.||+++||.|+. .|.......
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~ 755 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGYPLP-RCDPSNADG 755 (768)
T ss_dssp SGGGSCGGGGCSCTEEESTTSC-CCCSCC---
T ss_pred hhccCCHHHhcCCchhcCCCCc-CCCCCccCC
Confidence 9999999999999999999987 897655443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-67 Score=602.24 Aligned_cols=604 Identities=29% Similarity=0.375 Sum_probs=488.4
Q ss_pred hhchhccCCCCCCEEEeCcc----CCccccCCCCCCEEECCCCcCCcccch--hccCCCCCCEEeCCCCcCCCCCChhhc
Q 043317 10 IFLTGLANLTILQVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSS--TITSLTSLEYLDLSYNNFEGPCPLSSL 83 (700)
Q Consensus 10 ~~p~~~~~l~~L~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 83 (700)
.+|.++.++++|+.++++.+ +|+.++.+++|++|||++|.+++.+|. .++++++|++|++++|.+.+.+|...+
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred ccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence 37889999999999999933 458899999999999999999998888 999999999999999999988886556
Q ss_pred cCCCCCcEEEcccCccccccccC--CCCCCCcccEEEeeCCCCC-CcChhhcCCCCCCEEEccCCCCCccCchHHhhcCC
Q 043317 84 ANHSKLEVLLLSSTNNMLLVKTE--NFLPTFQLKVLELANCSLN-VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT 160 (700)
Q Consensus 84 ~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 160 (700)
.++++|++|++++|.+.+..+.. .+.++++|++|++++|.+. ..|. ..+++|++|++++|.+++.+|. +.+++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~--l~~l~ 223 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF--LGDCS 223 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB--CTTCC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc--cccCC
Confidence 89999999999999876655432 1678899999999999994 4443 7899999999999999987877 56999
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCC-CCCcEEE
Q 043317 161 KLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM-KELIILH 239 (700)
Q Consensus 161 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~ 239 (700)
+|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|+
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 9999999999999999999999999999999999999888875 47899999999999999999988875 9999999
Q ss_pred ccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccc-cCCCCCCcEEEcccCcccccccccccCCC-CCcEEEcccCc
Q 043317 240 LSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSK-DLNLTQMEFLYLENNKFSGKIEEGLLNST-KLYQLDISHNF 317 (700)
Q Consensus 240 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~ 317 (700)
+++|++++.+|..+ ..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus 301 Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 301 LSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp CCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred CcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 99999998888776 67999999999999999877765 89999999999999999999999988887 89999999998
Q ss_pred CCCCcchhhcC--CCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcc
Q 043317 318 LSGHIPHWMGN--FSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIP 394 (700)
Q Consensus 318 l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 394 (700)
+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++.+|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 88777777766 7788888888888888888888888888888888888888777777 78888888888888888888
Q ss_pred hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317 395 DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI 474 (700)
Q Consensus 395 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (700)
..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..++.++. ++.+++.++.+....|..+..+
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN--LAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCEEECCGGGGGC
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC--CCEEECCCCcccCcCCHHHcCC
Confidence 88888888888888888888888888888888888888888888888888777653 3456666666653333222222
Q ss_pred ccc---cccccccc-cccccCCCC--------cccceEEEeeccccc----------------cccCccccccceEECCC
Q 043317 475 GTY---YNSTLDLE-VCKRDMFTS--------PQQVKVEFVTKNRYE----------------LYNGSNLNYMVGLDLSC 526 (700)
Q Consensus 475 ~~~---~~~~~~~~-~~~~~~~~~--------~~~l~~~~~~~~~~~----------------~~~~~~l~~L~~L~Ls~ 526 (700)
... ......+. ..+...+.. .......+....... ......+..+..++++.
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 111 11111111 001111110 011122222211110 00112244556678888
Q ss_pred CcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317 527 NELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 527 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 606 (700)
|.+.|.+|..++.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..++.+++|++|||++|+++|.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCcCCCccCCCc
Q 043317 607 DK-GQYSTFDESSYRGNL 623 (700)
Q Consensus 607 ~~-~~~~~~~~~~~~gn~ 623 (700)
.. ..+..+......+|.
T Consensus 698 ~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp GGGGGCCCCSEEECCSSE
T ss_pred hHHhCCCCCCEEECcCCc
Confidence 73 333334444444443
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-58 Score=522.99 Aligned_cols=572 Identities=19% Similarity=0.164 Sum_probs=387.9
Q ss_pred chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317 7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS 81 (700)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 81 (700)
.++.+|..+. +++++|+|+++ .+..|.++++|++|+|++|.+++..|..|+++++|++|++++|+++ .+|..
T Consensus 15 ~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 91 (680)
T 1ziw_A 15 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDK 91 (680)
T ss_dssp CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTT
T ss_pred CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChh
Confidence 4566777665 79999999954 3456999999999999999999999999999999999999999998 56656
Q ss_pred hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCC-CcChhhcCCCCCCEEEccCCCCCccCchHHh-hcC
Q 043317 82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN-VVPTFLLHQYDLKYLDLSLNNLVGDFPSWML-QNN 159 (700)
Q Consensus 82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~-~~l 159 (700)
.|+++++|++|++++|.+ ..++...|.++++|++|++++|.+. ..|..+.++++|++|++++|.+++..+..+. ..+
T Consensus 92 ~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCcc-CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 799999999999999875 4566667999999999999999994 4566788999999999999999855554432 256
Q ss_pred CCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHh--hccCCcEEEccCCcCCccCCccccCCCC--C
Q 043317 160 TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGT--ILKKLLVLDISNNHFEGNIPSSVGEMKE--L 235 (700)
Q Consensus 160 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~--L 235 (700)
++|++|++++|.+++..+..+..+.+|+.++++++.+.+.....+.. ..++|++|++++|.+.+..|.++.+++. |
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 89999999999999888888888888888888777765332222221 1256777777777777777777776644 7
Q ss_pred cEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc-----ccc----ccccCCC
Q 043317 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG-----KIE----EGLLNST 306 (700)
Q Consensus 236 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~~~ 306 (700)
+.|++++|++++..+..+ ..+++|++|++++|++.+..+..+..+++|+.|++++|...+ .+| ..+..++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 777777777766554443 557777777777777777777777777777777777664432 122 2566677
Q ss_pred CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc--chhhccC--CCCCCEEEccCccCcccCCCcc-CCCCCcE
Q 043317 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN--IPVQLLN--HRTLKLLSVSENYLSGSMTSSF-NLSSLKH 381 (700)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~ 381 (700)
+|++|++++|.+++..+..|..+++|++|++++|.+... ....+.. .++|+.|++++|.+++..+..+ .+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 777777777777777777777777777777777764321 1122222 2467777777777777766666 6777777
Q ss_pred EEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC--CCCCchhhhhhhhhhhhccc
Q 043317 382 LYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN--GSIPSCFTNMLQWTIENVDL 458 (700)
Q Consensus 382 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~l~~~~~~~ 458 (700)
|++++|++++.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+.. ++.+++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~--L~~L~L 487 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN--LTILDL 487 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT--CCEEEC
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC--CCEEEC
Confidence 7777777765444 56667777777777777777666677777777777777777765 455666655543 234445
Q ss_pred cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccc-----------cCccccccceEECCCC
Q 043317 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELY-----------NGSNLNYMVGLDLSCN 527 (700)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~l~~L~~L~Ls~N 527 (700)
.++.+..+++..+ ..++.++...+..+..... ....+++|+.|+|++|
T Consensus 488 s~N~l~~i~~~~~---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 488 SNNNIANINDDML---------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp CSSCCCCCCTTTT---------------------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred CCCCCCcCChhhh---------------------ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 5555544433211 1111222222222222111 0123455556666666
Q ss_pred cCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCccccc-CCCCCCeEeccCCcCcccCC
Q 043317 528 ELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLI-ELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 528 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p 606 (700)
+++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 66543334455566666666666666655555555566666666666666655555554 45556666666666654443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-56 Score=509.55 Aligned_cols=579 Identities=22% Similarity=0.223 Sum_probs=469.8
Q ss_pred CEEEeCc----cCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccC
Q 043317 22 QVLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97 (700)
Q Consensus 22 ~~L~Lsg----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 97 (700)
+.+++++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|++++..| ..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCC
Confidence 4567763 3666554 799999999999999888899999999999999999986555 68999999999999988
Q ss_pred ccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccC
Q 043317 98 NNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL 176 (700)
Q Consensus 98 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 176 (700)
.+. .++...|.++++|++|++++|+++.+| ..+.++++|++|++++|.+++..|..+ .++++|++|++++|.+++..
T Consensus 84 ~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 84 ELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBC
T ss_pred ccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccC
Confidence 654 566667999999999999999997776 578899999999999999986656554 58999999999999998766
Q ss_pred CCCCC--CCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCcccc---CCCCCcEEEccCccCCCCCch
Q 043317 177 RLPNT--KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVG---EMKELIILHLSKNNFSEDFST 251 (700)
Q Consensus 177 ~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~ 251 (700)
+..+. .+++|++|++++|.+.+..|..+.. +++|+.++++++.+.......+. ..++|+.|++++|.+.+..+.
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 55443 5688999999999998665655544 78999999999887633222221 347899999999999887766
Q ss_pred HHHhcCC--cCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCC-----Ccch
Q 043317 252 PFLTGCI--SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSG-----HIPH 324 (700)
Q Consensus 252 ~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~ 324 (700)
.+ .+++ +|++|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|...+ .+|.
T Consensus 241 ~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 241 TF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred Hh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 55 4454 49999999999999988999999999999999999999999999999999999999886553 2332
Q ss_pred ----hhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc--cCCCcc---CCCCCcEEEccCCcCccCcch
Q 043317 325 ----WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG--SMTSSF---NLSSLKHLYVQKNALSGPIPD 395 (700)
Q Consensus 325 ----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~---~l~~L~~L~l~~n~l~~~~~~ 395 (700)
.|..+++|++|++++|.+.+..+..+.++++|++|++++|.+.. .....+ ..++|+.|++++|++++..|.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 68889999999999999999888899999999999999998543 333333 346899999999999988899
Q ss_pred hhhCCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317 396 MLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI 474 (700)
Q Consensus 396 ~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (700)
.+..+++|++|++++|++++.+| ..+..+++|++|++++|++.+..+..|..++.+ +.+++.++.+....
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L--~~L~l~~n~l~~~~------- 470 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL--QRLMLRRVALKNVD------- 470 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC--CEEECTTSCCBCTT-------
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc--ccchhccccccccc-------
Confidence 99999999999999999987665 688999999999999999998888888776533 33444444432111
Q ss_pred ccccccccccccccccCCCCcccceEEEeeccccccccC---ccccccceEECCCCcCcccCC--------ccccCcCCC
Q 043317 475 GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG---SNLNYMVGLDLSCNELTGNVP--------SEIGDLQKI 543 (700)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L 543 (700)
.....+..++.++...+..+.+..... ..+++|+.|++++|.+++..+ ..++++++|
T Consensus 471 ------------~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 471 ------------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp ------------CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred ------------cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 011234556667777777777665543 457889999999999986422 347899999
Q ss_pred cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCC--CCCCcCCCccCC
Q 043317 544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG--QYSTFDESSYRG 621 (700)
Q Consensus 544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~g 621 (700)
++|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|+.|++++|++++.+|... .+..+....+.|
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 999999999996666689999999999999999998888889999999999999999998877521 345555566777
Q ss_pred CcCCcCc
Q 043317 622 NLYLCGP 628 (700)
Q Consensus 622 n~~lcg~ 628 (700)
||+.|.+
T Consensus 619 N~~~c~c 625 (680)
T 1ziw_A 619 NPFDCTC 625 (680)
T ss_dssp CCCCBCC
T ss_pred CCcccCC
Confidence 7777763
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-56 Score=520.31 Aligned_cols=549 Identities=19% Similarity=0.151 Sum_probs=368.6
Q ss_pred chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCccc-chhccCCCCCCEEeCCCCcCCCCCCh
Q 043317 7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSL-SSTITSLTSLEYLDLSYNNFEGPCPL 80 (700)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~ 80 (700)
+++.+|. -.++|++|+|+++ .+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|++++..|
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p- 90 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP- 90 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-
T ss_pred CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-
Confidence 4555665 4577888888844 4677888888888888888655444 7778888888888888888875444
Q ss_pred hhccCCCCCcEEEcccCcccccccc-CCCCCCCcccEEEeeCCCCCCc--ChhhcCCCCCCEEEccCCCCCccCchHHhh
Q 043317 81 SSLANHSKLEVLLLSSTNNMLLVKT-ENFLPTFQLKVLELANCSLNVV--PTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157 (700)
Q Consensus 81 ~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~ 157 (700)
..|.++++|++|++++|.....++. ..+.++++|++|++++|.+..+ +..+.++++|++|++++|.+++..+..+.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~- 169 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE- 169 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-
Confidence 6788888888888888776654433 3477888888888888888544 34677888888888888888766665543
Q ss_pred cC--CCCCEEEccCCcCcccCCCCCCCCCC------ccEEeCCCCcCccccChhHHhhc--cCCcEEEccCCc-------
Q 043317 158 NN--TKLEVLFLTNNSFTGNLRLPNTKHDF------LHHLDASSNNFIGTLPQDMGTIL--KKLLVLDISNNH------- 220 (700)
Q Consensus 158 ~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~------- 220 (700)
.+ ++|+.|++++|.+.+..+..+..+.. |+.|++++|.+.+.++..+...+ .+++.+.++.+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 44 78888888888888777766665554 88888888877777776665432 356777766332
Q ss_pred --CCccCCccccCC--CCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc
Q 043317 221 --FEGNIPSSVGEM--KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG 296 (700)
Q Consensus 221 --i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 296 (700)
+....+..|..+ ++|+.|++++|.+.+..+..+ ..+++|+.|++++|++.+..+..+..+++|++|++++|++++
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence 222223333333 456666666666655443332 456666666666666666666666666666666666666666
Q ss_pred cccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCC
Q 043317 297 KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNL 376 (700)
Q Consensus 297 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l 376 (700)
..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++ + ..+++|+.|++++|+++..+.. .
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~~l~~~---~ 400 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLVTLPKI---N 400 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCCCCCCC---C
T ss_pred cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCccccccc---c
Confidence 656666666666666666666665555566666666666666666653 1 2255666666666666644322 3
Q ss_pred CCCcEEEccCCcCccCc-chhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhh
Q 043317 377 SSLKHLYVQKNALSGPI-PDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIE 454 (700)
Q Consensus 377 ~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~ 454 (700)
.+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~------- 473 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW------- 473 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS-------
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch-------
Confidence 45666666666665421 22334566666666666666643332 2344566666666666665322211000
Q ss_pred hccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCC
Q 043317 455 NVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVP 534 (700)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 534 (700)
.....+++|+.|+|++|++++.+|
T Consensus 474 --------------------------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 474 --------------------------------------------------------DVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp --------------------------------------------------------SCSSCBCCEECCCCCHHHHTTCCT
T ss_pred --------------------------------------------------------hhhcCcccccEEECCCCcccccCh
Confidence 001235788899999999999999
Q ss_pred ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCc
Q 043317 535 SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 614 (700)
Q Consensus 535 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 614 (700)
..|..+++|++|+|++|++++..|..+. ++|+.|||++|++++.+|..| .+|+.+++++|++.+.++. .+|..|
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~-~~f~~~ 571 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL-STFINW 571 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC-CSHHHH
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc-HHHHHH
Confidence 9999999999999999999987777776 899999999999999998776 4788999999999876553 233222
Q ss_pred CCCccCCCcCCcCcCCCCCCCCCCCCC
Q 043317 615 DESSYRGNLYLCGPTINKSCNSAEETP 641 (700)
Q Consensus 615 ~~~~~~gn~~lcg~~~~~~c~~~~~~~ 641 (700)
...++..+||.+....|..+....
T Consensus 572 ---~~~~~~~~~~~~~~~~C~~p~~~~ 595 (844)
T 3j0a_A 572 ---LNHTNVTIAGPPADIYCVYPDSFS 595 (844)
T ss_dssp ---HHHTTTTTCCCGGGCCCSSCSSSC
T ss_pred ---HHhcCcccccccccCccCCchhhC
Confidence 224566778887778887665543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-55 Score=493.78 Aligned_cols=519 Identities=21% Similarity=0.168 Sum_probs=423.5
Q ss_pred chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317 7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS 81 (700)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 81 (700)
.++.+|..+.. ++++|+|+++ .|.+|+++++|++|+|++|++++..|.+|.++++|++|++++|++++..| .
T Consensus 23 ~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 99 (606)
T 3t6q_A 23 GLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-T 99 (606)
T ss_dssp CCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-T
T ss_pred CcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-h
Confidence 34567776654 7899999954 46788999999999999999998889999999999999999999985545 6
Q ss_pred hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCC
Q 043317 82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT 160 (700)
Q Consensus 82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 160 (700)
.++++++|++|++++|.+.. ++...+..+++|++|++++|++..++ ..+..+++|++|++++|.+++..|.. +..++
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 177 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQ 177 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTT
T ss_pred hhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-hhhhc
Confidence 78999999999999887543 44456888999999999999996652 33445899999999999998444444 46899
Q ss_pred CCC--EEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC-----ccCCccccCCC
Q 043317 161 KLE--VLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE-----GNIPSSVGEMK 233 (700)
Q Consensus 161 ~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~l~~l~ 233 (700)
+|+ .|++++|.+++..+..+.. ..|+.|++++|. .++..+.. +.+++...+....+. ...+..+..+.
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred ccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhh-ccccchhheechhhccccccccChhHhchhh
Confidence 999 8999999998877766544 689999999886 33333333 455444433332222 12233333333
Q ss_pred --CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 043317 234 --ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQL 311 (700)
Q Consensus 234 --~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 311 (700)
+|+.|++++|.+++..+. .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred cCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 789999999999765544 3467899999999999987 566778889999999999999998888889999999999
Q ss_pred EcccCcCCCCcch-hhcCCCCCcEEEcccCcCcccc--hhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCC
Q 043317 312 DISHNFLSGHIPH-WMGNFSNLEILLMSNNCLEGNI--PVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKN 387 (700)
Q Consensus 312 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n 387 (700)
++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+..+ .+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9999998865554 5888999999999999998766 7788899999999999999998888877 7899999999999
Q ss_pred cCccCcch-hhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCC-C--chhhhhhhhhhhhccccCCCc
Q 043317 388 ALSGPIPD-MLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSI-P--SCFTNMLQWTIENVDLFGGEL 463 (700)
Q Consensus 388 ~l~~~~~~-~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p--~~~~~l~~l~~~~~~~~~~~~ 463 (700)
++++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.. | ..+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------------------ 472 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL------------------ 472 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG------------------
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh------------------
Confidence 99876654 4888999999999999999888888999999999999999987521 1 112
Q ss_pred cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC
Q 043317 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI 543 (700)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 543 (700)
..+++|+.|++++|.+++..|..|+.+++|
T Consensus 473 --------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 473 --------------------------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp --------------------------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred --------------------------------------------------ccCCCccEEECCCCccCccChhhhccccCC
Confidence 225789999999999999999999999999
Q ss_pred cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317 544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 606 (700)
++|+|++|++++..|..+++++.| .|++++|++++.+|..+..+++|+++++++|++++.++
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999999 99999999999999999999999999999999997655
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-55 Score=494.71 Aligned_cols=524 Identities=22% Similarity=0.241 Sum_probs=427.2
Q ss_pred EEEeCc----cCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCc
Q 043317 23 VLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTN 98 (700)
Q Consensus 23 ~L~Lsg----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 98 (700)
.++.++ .+|..+. +++++|+|++|.+++..|.+|.++++|++|++++|++++..| ..|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCc
Confidence 556652 3565554 478999999999998889999999999999999999985444 678999999999999887
Q ss_pred cccccccCCCCCCCcccEEEeeCCCCCCc-ChhhcCCCCCCEEEccCCCCCcc-CchHHhhcCCCCCEEEccCCcCcccC
Q 043317 99 NMLLVKTENFLPTFQLKVLELANCSLNVV-PTFLLHQYDLKYLDLSLNNLVGD-FPSWMLQNNTKLEVLFLTNNSFTGNL 176 (700)
Q Consensus 99 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~ 176 (700)
... +.+..|.++++|++|++++|+++.+ |..+..+++|++|++++|.+++. +|. ++ .+++|++|++++|.+++..
T Consensus 93 l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 93 LIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GF-PTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TC-CCTTCCEEECCSSCCCEEC
T ss_pred ccc-cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-cc-CCcccCEEEcccCcccccC
Confidence 654 4445788899999999999999776 56678889999999999999852 243 33 5889999999999988777
Q ss_pred CCCCCCCCCcc--EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCC----CCc
Q 043317 177 RLPNTKHDFLH--HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE----DFS 250 (700)
Q Consensus 177 ~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~ 250 (700)
+..+..+++|+ .|++++|.+.+..|.. +. ..+|++|++++|. ..+..+..+.+++...+....+.+ .++
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGA-FD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTT-TT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred hhhhhhhcccceeEEecCCCccCccChhH-hh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccC
Confidence 77778888888 8899999888654443 44 3578899998886 334455556555544443332221 222
Q ss_pred hHHHhcCC--cCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcC
Q 043317 251 TPFLTGCI--SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGN 328 (700)
Q Consensus 251 ~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 328 (700)
...+.++. +|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 33333343 7999999999999988888999999999999999998 67888999999999999999999888889999
Q ss_pred CCCCcEEEcccCcCcccchh-hccCCCCCCEEEccCccCcccC--CCcc-CCCCCcEEEccCCcCccCcchhhhCCCCcc
Q 043317 329 FSNLEILLMSNNCLEGNIPV-QLLNHRTLKLLSVSENYLSGSM--TSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLM 404 (700)
Q Consensus 329 l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 404 (700)
+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+ .+++|++|++++|++++..|..+..+++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 99999999999999866655 4889999999999999998876 5555 899999999999999988889999999999
Q ss_pred EEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccc
Q 043317 405 TLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLD 483 (700)
Q Consensus 405 ~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (700)
+|++++|++++..+. .+..+++|++|++++|++.+..|..+..
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------ 447 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG------------------------------------ 447 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT------------------------------------
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC------------------------------------
Confidence 999999999877654 4889999999999999998777666544
Q ss_pred cccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCccc---CCccccCcCCCcEEeCCCccCccccCcc
Q 043317 484 LEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGN---VPSEIGDLQKIRGLNLSHNCLSGSIPRS 560 (700)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 560 (700)
+++|+.|++++|.+++. .+..++.+++|++|++++|++++..|..
T Consensus 448 --------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 448 --------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp --------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred --------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 37889999999999872 3467999999999999999999999999
Q ss_pred cccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC-CCCCCcCCCccCCCcCCcC
Q 043317 561 FSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFDESSYRGNLYLCG 627 (700)
Q Consensus 561 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lcg 627 (700)
|+++++|+.|||++|++++.+|..+..++.| +|++++|++++.+|.. ..+..+....+.||++.|.
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 9999999999999999999999999999999 9999999999888752 3333444455566665554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-54 Score=487.33 Aligned_cols=517 Identities=21% Similarity=0.166 Sum_probs=408.5
Q ss_pred chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317 7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS 81 (700)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 81 (700)
.++.+|..+. ++|++|+|+++ .+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|++++..| .
T Consensus 22 ~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~ 98 (606)
T 3vq2_A 22 KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-G 98 (606)
T ss_dssp CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-T
T ss_pred CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-h
Confidence 3556676654 78888998854 34578888999999999998888888888889999999999998885545 6
Q ss_pred hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCC--CcChhhcCCCCCCEEEccCCCCCccCchHHhhcC
Q 043317 82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN--VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN 159 (700)
Q Consensus 82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 159 (700)
.|+++++|++|++++|... .++...+..+++|++|++++|.+. .+|..+.++++|++|++++|++++..|..+ +.+
T Consensus 99 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l 176 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFL 176 (606)
T ss_dssp SSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHH
T ss_pred hcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhh
Confidence 7888899999999887654 344446888888999999999885 578888888899999999998885444433 344
Q ss_pred CC----CCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc------cCCccc
Q 043317 160 TK----LEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG------NIPSSV 229 (700)
Q Consensus 160 ~~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~------~~~~~l 229 (700)
++ +++|++++|.+++..+..+... +|+.|++++|.+.+.........++.++.+++..+.+.+ ..+..+
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 44 4488899988886665555544 888899988887644444444457888888776554432 111222
Q ss_pred cCCC--CCcEEEc-cCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCC
Q 043317 230 GEMK--ELIILHL-SKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST 306 (700)
Q Consensus 230 ~~l~--~L~~L~L-~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 306 (700)
..+. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+.... .+..+++|++|++++|.+ +.+| .+ .++
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~ 328 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP 328 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred hhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cccc-cC-CCC
Confidence 2222 3566666 66777776665 567899999999999986543 778889999999999999 4667 44 889
Q ss_pred CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc--chhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN--IPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV 384 (700)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 384 (700)
+|++|++++|+..+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.+.....+++|++|++
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEEC
T ss_pred ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeEC
Confidence 9999999999655333 577889999999999998865 377888999999999999998886644448899999999
Q ss_pred cCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCC-CCchhhhhhhhhhhhccccCCC
Q 043317 385 QKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS-IPSCFTNMLQWTIENVDLFGGE 462 (700)
Q Consensus 385 ~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~ 462 (700)
++|++.+..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+..
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------- 471 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------------- 471 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---------------
Confidence 9999987777 6788899999999999999988888999999999999999998763 4544433
Q ss_pred ccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCC
Q 043317 463 LSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQK 542 (700)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 542 (700)
+++|+.|++++|.+++..|..++.+++
T Consensus 472 -----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 472 -----------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -----------------------------------------------------CCCCCEEECCCCcCCccChhhhccccc
Confidence 478899999999999999999999999
Q ss_pred CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCcCcccCCC
Q 043317 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN-FLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~ 607 (700)
|++|++++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999988999999999999999999999 6677788887 599999999999976664
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-54 Score=497.73 Aligned_cols=516 Identities=21% Similarity=0.224 Sum_probs=437.7
Q ss_pred CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317 30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL 109 (700)
Q Consensus 30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 109 (700)
+|. -.++|++|||++|.+++..|..|.++++|++|++++|...+.++...|.++++|++|+|++|.+.. +.+..|.
T Consensus 19 vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~ 94 (844)
T 3j0a_A 19 VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQ 94 (844)
T ss_dssp CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSC
T ss_pred CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHcc
Confidence 555 568999999999999999999999999999999999977767766889999999999999987654 4455799
Q ss_pred CCCcccEEEeeCCCCC-CcChh--hcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCC--C
Q 043317 110 PTFQLKVLELANCSLN-VVPTF--LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKH--D 184 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~-~~p~~--l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~ 184 (700)
++++|++|+|++|.+. .+|.. +.++++|++|++++|.+++..+...+.++++|++|++++|.+++..+..+..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999999999995 45654 88999999999999999866565556799999999999999998888887766 8
Q ss_pred CccEEeCCCCcCccccChhHHhhcc------CCcEEEccCCcCCccCCccccCC---CCCcEEEccCcc---------CC
Q 043317 185 FLHHLDASSNNFIGTLPQDMGTILK------KLLVLDISNNHFEGNIPSSVGEM---KELIILHLSKNN---------FS 246 (700)
Q Consensus 185 ~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~L~~n~---------l~ 246 (700)
+|+.|++++|.+.+..|..+.. ++ .|++|++++|.+.+..+..+... .+++.+.++.+. +.
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 9999999999999877766543 23 49999999999988888777654 578888887432 22
Q ss_pred CCCchHHHhc--CCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcch
Q 043317 247 EDFSTPFLTG--CISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH 324 (700)
Q Consensus 247 ~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 324 (700)
+..... +.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|.
T Consensus 254 ~~~~~~-f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 254 DPDQNT-FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TGGGTT-TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCChhh-hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 222222 233 37899999999999999999999999999999999999999899999999999999999999988899
Q ss_pred hhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCcc
Q 043317 325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLM 404 (700)
Q Consensus 325 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 404 (700)
.|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++... +++|+.|++++|+++ .+|.. ..+++
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~---~~~l~ 404 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI---NLTAN 404 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC---CTTCC
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-ccccc---ccccc
Confidence 99999999999999999998888889999999999999999986543 789999999999998 45543 56899
Q ss_pred EEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccc
Q 043317 405 TLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLD 483 (700)
Q Consensus 405 ~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (700)
.|++++|++++... ..+..+++|+.|++++|++++..+....
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------- 447 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP------------------------------------- 447 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-------------------------------------
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-------------------------------------
Confidence 99999999986432 3456899999999999999854332110
Q ss_pred cccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCc-----ccCCccccCcCCCcEEeCCCccCccccC
Q 043317 484 LEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELT-----GNVPSEIGDLQKIRGLNLSHNCLSGSIP 558 (700)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 558 (700)
..+++|+.|++++|.++ +..+..|.++++|++|+|++|++++.+|
T Consensus 448 ------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (844)
T 3j0a_A 448 ------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497 (844)
T ss_dssp ------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred ------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence 11477899999999997 4556779999999999999999999999
Q ss_pred cccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcCcCC
Q 043317 559 RSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTI 630 (700)
Q Consensus 559 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~~ 630 (700)
..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+....+.||++.|.++.
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 9999999999999999999988887776 89999999999999999864 45666667888998887653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-53 Score=477.30 Aligned_cols=525 Identities=19% Similarity=0.165 Sum_probs=432.8
Q ss_pred CCEEEeCcc----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEccc
Q 043317 21 LQVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96 (700)
Q Consensus 21 L~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 96 (700)
-++++.++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|++++..| ..|.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCC
Confidence 356777743 566554 899999999999998888899999999999999999985444 6799999999999998
Q ss_pred CccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCcc
Q 043317 97 TNNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTG 174 (700)
Q Consensus 97 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 174 (700)
|.+. .+.+..|.++++|++|++++|.+..++ ..+.++++|++|++++|.+.+ .+|..+ .++++|++|++++|.+++
T Consensus 90 n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCE
T ss_pred Cccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCccee
Confidence 8754 444557999999999999999997666 678899999999999999985 567766 489999999999999998
Q ss_pred cCCCCCCCCCCcc----EEeCCCCcCccccChhHHhhccCCcEEEccCCcCC-ccCCccccCCCCCcEEEccCccCCCC-
Q 043317 175 NLRLPNTKHDFLH----HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE-GNIPSSVGEMKELIILHLSKNNFSED- 248 (700)
Q Consensus 175 ~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~- 248 (700)
..+..+..+.+|+ ++++++|.+. .++...+.. .+|++|++++|.+. +..|..+.+++.|+.+++..+.+.+.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred cChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 8888777666554 8999999987 566666663 48999999999887 46677889999999988876554431
Q ss_pred ----CchHHHhcCC--cCcEEEc-CCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC
Q 043317 249 ----FSTPFLTGCI--SLWFLDL-SDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH 321 (700)
Q Consensus 249 ----~~~~~~~~~~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 321 (700)
.+...+.++. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SS
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cc
Confidence 2222222232 4667777 77778877776 8889999999999999974 45 788899999999999999 57
Q ss_pred cchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC--CCcc-CCCCCcEEEccCCcCccCcchhhh
Q 043317 322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM--TSSF-NLSSLKHLYVQKNALSGPIPDMLF 398 (700)
Q Consensus 322 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~ 398 (700)
+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+++.. +..+ .+++|++|++++|.+++ +|..+.
T Consensus 322 lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~ 396 (606)
T 3vq2_A 322 FPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396 (606)
T ss_dssp CCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred ccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence 774 4 8999999999999665444 5778999999999999998773 4444 88999999999999884 668888
Q ss_pred CCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccc
Q 043317 399 RSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTY 477 (700)
Q Consensus 399 ~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (700)
.+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------ 446 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG------------------------------ 446 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC------------------------------
Confidence 99999999999999998777 68899999999999999998777766544
Q ss_pred cccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcc-cCCccccCcCCCcEEeCCCccCccc
Q 043317 478 YNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG-NVPSEIGDLQKIRGLNLSHNCLSGS 556 (700)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ 556 (700)
+++|+.|++++|.+++ .+|..++.+++|++|++++|++++.
T Consensus 447 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 447 --------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp --------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred --------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 3788999999999998 4799999999999999999999999
Q ss_pred cCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCC-CcCCCccCCCcCCcCcC
Q 043317 557 IPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS-TFDESSYRGNLYLCGPT 629 (700)
Q Consensus 557 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~~~~~~~gn~~lcg~~ 629 (700)
.|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++...+....+. .+....+.+|++.|.++
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999999999999999999999999999999995433322222 24445667777777543
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-49 Score=439.16 Aligned_cols=504 Identities=20% Similarity=0.198 Sum_probs=398.7
Q ss_pred CEEEeCc----cCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccC
Q 043317 22 QVLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97 (700)
Q Consensus 22 ~~L~Lsg----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 97 (700)
++.+.++ .+|..+ .+++++|+|++|.+++..+.+|.++++|++|++++|++++ ++...|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCC
Confidence 3455552 255544 3589999999999998888899999999999999999984 45477999999999999987
Q ss_pred ccccccccCCCCCCCcccEEEeeCCCCCCcCh-hhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCccc
Q 043317 98 NNMLLVKTENFLPTFQLKVLELANCSLNVVPT-FLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTGN 175 (700)
Q Consensus 98 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~-~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 175 (700)
.. ..+++..|.++++|++|++++|+++.+|. .+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++.
T Consensus 87 ~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CC-CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEE
T ss_pred cC-CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCcccee
Confidence 74 44555678999999999999999987765 58889999999999999985 467765 4899999999999999877
Q ss_pred CCCCCCCCCCc----cEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC-ccCCccccCCCCCcEEEccCccCCC---
Q 043317 176 LRLPNTKHDFL----HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE-GNIPSSVGEMKELIILHLSKNNFSE--- 247 (700)
Q Consensus 176 ~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~--- 247 (700)
.+..+..+.+| +.+++++|.+.+..| ..+.. .+|+.|++++|... ...+..+..++.++.+.+....+..
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred cHHHccchhccchhhhhcccCCCCceecCH-HHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 77777777777 788999988875444 44442 37888888887543 2345566777777776665433221
Q ss_pred --CCchHHHhcCC--cCcEEEcCCc-ccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCc
Q 043317 248 --DFSTPFLTGCI--SLWFLDLSDN-NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHI 322 (700)
Q Consensus 248 --~~~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 322 (700)
.++...+.+++ .++.++++++ .+.+..+..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l 319 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QF 319 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-cc
Confidence 11222222333 3566777777 677777788888889999999999888 467777777 8999999999888 45
Q ss_pred chhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC--CCcc-CCCCCcEEEccCCcCccCcchhhhC
Q 043317 323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM--TSSF-NLSSLKHLYVQKNALSGPIPDMLFR 399 (700)
Q Consensus 323 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~ 399 (700)
|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+ .+++|++|++++|++++..+. +..
T Consensus 320 ~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 394 (570)
T 2z63_A 320 PT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394 (570)
T ss_dssp CB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET
T ss_pred Cc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc
Confidence 54 4678899999999888765554 67888999999999888764 3334 788899999999988754444 888
Q ss_pred CCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccc
Q 043317 400 SSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYY 478 (700)
Q Consensus 400 ~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (700)
+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+.+
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------- 443 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------- 443 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc-------------------------------
Confidence 8899999999998887655 46788889999999999887766655543
Q ss_pred ccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCc-ccCCccccCcCCCcEEeCCCccCcccc
Q 043317 479 NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELT-GNVPSEIGDLQKIRGLNLSHNCLSGSI 557 (700)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 557 (700)
+++|+.|++++|.++ +.+|..++.+++|++|++++|++++..
T Consensus 444 -------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 444 -------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp -------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred -------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC
Confidence 377889999999998 578999999999999999999999888
Q ss_pred CcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC
Q 043317 558 PRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 608 (700)
Q Consensus 558 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 608 (700)
|..|+++++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999999999998889999999999999999999988864
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-48 Score=433.10 Aligned_cols=495 Identities=22% Similarity=0.200 Sum_probs=408.3
Q ss_pred chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317 7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS 81 (700)
Q Consensus 7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 81 (700)
.++.+|..+. +++++|+|+++ .+.+|.++++|++|+|++|++++..+.+|.++++|++|++++|++++ ++..
T Consensus 18 ~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~ 94 (570)
T 2z63_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALG 94 (570)
T ss_dssp CCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTT
T ss_pred CccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHh
Confidence 4556776553 57999999955 35678999999999999999998888999999999999999999985 4547
Q ss_pred hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCC--cChhhcCCCCCCEEEccCCCCCccCchHHhhcC
Q 043317 82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV--VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN 159 (700)
Q Consensus 82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 159 (700)
.|.++++|++|++++|... .++...+..+++|++|++++|.+.. +|..+.++++|++|++++|++++..+.. +..+
T Consensus 95 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l 172 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVL 172 (570)
T ss_dssp TTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHH
T ss_pred hhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccch
Confidence 8999999999999998754 4454468899999999999999964 7999999999999999999998544444 4577
Q ss_pred CCC----CEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC------ccCCccc
Q 043317 160 TKL----EVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE------GNIPSSV 229 (700)
Q Consensus 160 ~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~l 229 (700)
++| +.+++++|.+++..+..+... +|+.|++++|.............++.++...+....+. ......+
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 777 899999999998888777766 89999999986443222233334677776665433222 1122233
Q ss_pred cCCC--CCcEEEccCc-cCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCC
Q 043317 230 GEMK--ELIILHLSKN-NFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST 306 (700)
Q Consensus 230 ~~l~--~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 306 (700)
..++ .++.++++++ .+.+..+..+ ..+++|++|++++|.+.+ ++..+..+ +|++|++++|.+. .+|. ..++
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~ 325 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK 325 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred ccccccchhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence 3333 3567778777 6666565554 668999999999999975 66777777 9999999999998 4454 4678
Q ss_pred CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccc--hhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI--PVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV 384 (700)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 384 (700)
+|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+....+++|++|++
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence 999999999998876654 78899999999999998654 77889999999999999999988777338999999999
Q ss_pred cCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC-CCCCchhhhhhhhhhhhccccCCC
Q 043317 385 QKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN-GSIPSCFTNMLQWTIENVDLFGGE 462 (700)
Q Consensus 385 ~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~ 462 (700)
++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|+++ +.+|..+..
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~--------------- 468 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------------- 468 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc---------------
Confidence 9999987666 57888999999999999999999999999999999999999987 455544433
Q ss_pred ccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCC
Q 043317 463 LSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQK 542 (700)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 542 (700)
+++|+.|++++|++++..|..++.+++
T Consensus 469 -----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 469 -----------------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -----------------------------------------------------ccCCCEEECCCCccccCChhhhhcccC
Confidence 478999999999999999999999999
Q ss_pred CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcc
Q 043317 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA 583 (700)
Q Consensus 543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 583 (700)
|++|++++|++++.+|..|+++++|+.|++++|++++..|.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999998889999999999999999999988764
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-48 Score=432.18 Aligned_cols=480 Identities=17% Similarity=0.187 Sum_probs=350.6
Q ss_pred CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317 30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL 109 (700)
Q Consensus 30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 109 (700)
+|..+. ++|++|+|++|++++..|..|.++++|++|++++|++++. +...|.++++|++|++++|.+.. ++...|.
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~ 95 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSS-LSSSWFG 95 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCS-CCHHHHT
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCc-cCHHHhc
Confidence 455443 6888888888888887788888888888888888888754 33678888888888888876543 3443577
Q ss_pred CCCcccEEEeeCCCCC--CcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCcc
Q 043317 110 PTFQLKVLELANCSLN--VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLH 187 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 187 (700)
++++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..|..+..+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 8888888888888885 34667888888999999988855577755556888899999999998888888888888999
Q ss_pred EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccC--C-ccccCCCCCcEEEccCccCCCCCchHHH---hcCCcCc
Q 043317 188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNI--P-SSVGEMKELIILHLSKNNFSEDFSTPFL---TGCISLW 261 (700)
Q Consensus 188 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~ 261 (700)
+|++++|.+. .+|..+...+++|++|++++|++.+.. + .....+++|+.|++++|.+++..+..+. ..+++|+
T Consensus 176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred eEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 9999888865 667766666788999999999887642 1 2234567788888888877654443322 2345666
Q ss_pred EEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC-----cchhhcCCCCCcEEE
Q 043317 262 FLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH-----IPHWMGNFSNLEILL 336 (700)
Q Consensus 262 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~ 336 (700)
.+++++|.+.+...... .....+..+.+++.|+++++.+... .+..+...++|+.|+
T Consensus 255 ~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp EEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred ccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 66666666544211000 0011223345555555555544321 122233455677777
Q ss_pred cccCcCcccchhhc-cCCCCCCEEEccCccCcccCC---Ccc-CCCCCcEEEccCCcCccCcc--hhhhCCCCccEEECc
Q 043317 337 MSNNCLEGNIPVQL-LNHRTLKLLSVSENYLSGSMT---SSF-NLSSLKHLYVQKNALSGPIP--DMLFRSSKLMTLDLR 409 (700)
Q Consensus 337 L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~---~~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~ 409 (700)
+++|.+. .+|..+ ..+++|++|++++|.+++..+ ..+ .+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 7777776 445444 457777777777777776542 223 67888889999988875432 457889999999999
Q ss_pred CCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccc
Q 043317 410 GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKR 489 (700)
Q Consensus 410 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (700)
+|+++ .+|..+..+++|++|++++|++++ +|..+
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-------------------------------------------- 429 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-------------------------------------------- 429 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--------------------------------------------
T ss_pred CCCCc-cCChhhcccccccEEECCCCCccc-ccchh--------------------------------------------
Confidence 99998 678888889999999999999862 22211
Q ss_pred cCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCE
Q 043317 490 DMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES 569 (700)
Q Consensus 490 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 569 (700)
.++|+.||+++|++++.+ +.+++|++|+|++|+++ .+|. .+.+++|+.
T Consensus 430 --------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 430 --------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV 477 (549)
T ss_dssp --------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred --------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence 256888999999998653 57899999999999999 6776 578999999
Q ss_pred EeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCC
Q 043317 570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQY 611 (700)
Q Consensus 570 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 611 (700)
|||++|++++.+|..+..+++|++|++++|+++|.+|...++
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l 519 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence 999999999999999999999999999999999887753333
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-49 Score=444.25 Aligned_cols=379 Identities=20% Similarity=0.186 Sum_probs=213.5
Q ss_pred CCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcC------CC------CCChhhccCCCCCcEEEcccCcccccccc
Q 043317 38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF------EG------PCPLSSLANHSKLEVLLLSSTNNMLLVKT 105 (700)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------~~------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 105 (700)
.+++.|+|++|.++|.+|.+++++++|++|+|++|.+ .+ .+|... +..|+ ++++.+.....++.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 5899999999999999999999999999999999976 22 223211 33444 55554443333322
Q ss_pred CCCC-CCC------------------cccEEEee--CCCCCCcChhhcCCCCCCEEEccCCCCCcc--------------
Q 043317 106 ENFL-PTF------------------QLKVLELA--NCSLNVVPTFLLHQYDLKYLDLSLNNLVGD-------------- 150 (700)
Q Consensus 106 ~~~~-~~~------------------~L~~L~L~--~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~-------------- 150 (700)
. +. .+. .++.+.+. .|+++.+|..++++++|++|+|++|.+++.
T Consensus 157 ~-~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 D-FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp G-SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred h-HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 1 11 011 11111111 345544777777777777777777777653
Q ss_pred ---CchHHh-hcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc-Ccc-ccChhHHhh-----ccCCcEEEccCC
Q 043317 151 ---FPSWML-QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN-FIG-TLPQDMGTI-----LKKLLVLDISNN 219 (700)
Q Consensus 151 ---~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~~-----l~~L~~L~L~~n 219 (700)
+|..+. .++++|++|++++|.+.+.+|..+..+++|++|++++|+ +++ .+|..++.. +++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 565541 256677777777777777777677777777777777776 666 666666551 256666666666
Q ss_pred cCCccCCc--cccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCC-CcEEEcccCcccc
Q 043317 220 HFEGNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-MEFLYLENNKFSG 296 (700)
Q Consensus 220 ~i~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~ 296 (700)
+++ .+|. .++++++|+.|++++|++++.+| . +..+++|++|++++|.+. .+|..+..+++ |++|++++|+++
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 666 5565 66666666666666666655555 2 344556666666666555 44444555555 555555555555
Q ss_pred cccccccCCC--CCcEEEcccCcCCCCcchhhc-------CCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCc
Q 043317 297 KIEEGLLNST--KLYQLDISHNFLSGHIPHWMG-------NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLS 367 (700)
Q Consensus 297 ~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 367 (700)
.+|..+...+ +|++|++++|++++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 4444444332 455555555555555554444 4444555555555554222222333444444444444444
Q ss_pred ccCCCccC-CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh--ccCCCCEEecCCCccCCCCCch
Q 043317 368 GSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC--QLRRLGMMDLSHNRFNGSIPSC 444 (700)
Q Consensus 368 ~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 444 (700)
..+...+. .. ..+..+++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..
T Consensus 471 ~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 531 (636)
T 4eco_A 471 EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531 (636)
T ss_dssp BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence 33322221 11 00011126666666666666 4555554 66666666666666654 4444
Q ss_pred h
Q 043317 445 F 445 (700)
Q Consensus 445 ~ 445 (700)
+
T Consensus 532 ~ 532 (636)
T 4eco_A 532 P 532 (636)
T ss_dssp G
T ss_pred h
Confidence 3
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-47 Score=420.27 Aligned_cols=456 Identities=20% Similarity=0.207 Sum_probs=322.8
Q ss_pred CEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEee
Q 043317 41 KVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELA 120 (700)
Q Consensus 41 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 120 (700)
++||+++|+++. +|..+. ++|++|++++|++++ ++...+.++++|++|++++|.... +.+..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccc-cChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecC
Confidence 467777777774 455444 777888888887774 343567777777777777665433 333456677777777777
Q ss_pred CCCCCCcChhhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccc
Q 043317 121 NCSLNVVPTFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199 (700)
Q Consensus 121 ~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 199 (700)
+|+++.+|.. .+++|++|++++|.+++ .+|..+ +++++|++|++++|.+++ ..+..
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~----------------- 134 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLP----------------- 134 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGG-----------------
T ss_pred CCceeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccch---hhccc-----------------
Confidence 7777766665 66777777777777764 345444 366777777766666543 11222
Q ss_pred cChhHHhhccCC--cEEEccCCcC--CccCCccccCCC-CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc-----
Q 043317 200 LPQDMGTILKKL--LVLDISNNHF--EGNIPSSVGEMK-ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN----- 269 (700)
Q Consensus 200 ~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~----- 269 (700)
+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 135 --------l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 135 --------IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp --------GTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred --------cccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence 3334 5555555555 444444444443 222345555555555554444556666666666664
Q ss_pred --cccccccccCCCCCCcEEEcccCccccccccccc---CCCCCcEEEcccCcCCCCcchhh-----cCCCCCcEEEccc
Q 043317 270 --FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLL---NSTKLYQLDISHNFLSGHIPHWM-----GNFSNLEILLMSN 339 (700)
Q Consensus 270 --l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~ 339 (700)
+.+.++ .+..+++|+.|++++|.+++..+..+. ..++|++|++++|++++.+|..+ ..+++|+.+++++
T Consensus 207 ~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 207 SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 444444 566677788888877777653322211 24578888888888887788777 7888888888888
Q ss_pred CcCcccch-hhccCC---CCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc
Q 043317 340 NCLEGNIP-VQLLNH---RTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG 415 (700)
Q Consensus 340 n~l~~~~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 415 (700)
|.+ .+| ..+..+ .+|+.|++++|.+...... ..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 362 (520)
T 2z7x_B 286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362 (520)
T ss_dssp CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC-SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred cce--ecchhhhhcccccCceeEEEcCCCccccccch-hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence 888 344 444433 6789999999888665421 267899999999999998889999999999999999999986
Q ss_pred --cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCC
Q 043317 416 --QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFT 493 (700)
Q Consensus 416 --~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (700)
.+|..+..+++|++|++++|++++.+|....
T Consensus 363 l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~----------------------------------------------- 395 (520)
T 2z7x_B 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC----------------------------------------------- 395 (520)
T ss_dssp HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-----------------------------------------------
T ss_pred cccchHHHhhCCCCCEEECCCCcCCcccccchh-----------------------------------------------
Confidence 5567889999999999999999865553210
Q ss_pred CcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCC
Q 043317 494 SPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573 (700)
Q Consensus 494 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 573 (700)
..++.|+.|++++|.+++..|..+. ++|++|++++|+++ .+|..+.++++|+.|+++
T Consensus 396 --------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 396 --------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp --------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred --------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 1247889999999999988887765 79999999999999 788888899999999999
Q ss_pred CCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317 574 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 574 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 606 (700)
+|++++..+..+..+++|++|++++|++++.++
T Consensus 453 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999995444459999999999999999997655
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-46 Score=415.99 Aligned_cols=479 Identities=20% Similarity=0.185 Sum_probs=347.4
Q ss_pred EEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeC
Q 043317 42 VLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN 121 (700)
Q Consensus 42 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 121 (700)
+.|.+++.++. +|..+. ++|++|++++|++++..| ..+.++ ++|++|++++
T Consensus 9 ~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l-------------------------~~L~~L~Ls~ 59 (549)
T 2z81_A 9 VCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGH-GDLRAC-------------------------ANLQVLILKS 59 (549)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECS-STTSSC-------------------------TTCCEEECTT
T ss_pred eEECCCCcccc-ccccCC--CCccEEECcCCccCccCh-hhhhcC-------------------------CcccEEECCC
Confidence 35666666663 333332 566666666666653322 334444 4555555555
Q ss_pred CCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcc-cCCCCCCCCCCccEEeCCCCcCccc
Q 043317 122 CSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTG-NLRLPNTKHDFLHHLDASSNNFIGT 199 (700)
Q Consensus 122 n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~ 199 (700)
|+++.++ ..+..+++|++|++++|++++ ++...+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+.+.
T Consensus 60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 138 (549)
T 2z81_A 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138 (549)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc
Confidence 5553333 445566666666666666663 333333466667777776666664 2445667777777777777775556
Q ss_pred cChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccc---cc
Q 043317 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF---FS 276 (700)
Q Consensus 200 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~ 276 (700)
+|...+..+++|++|++++|.+++..|..++.+++|+.|+++.|.+. .++..++..+++|++|++++|++.+.. ..
T Consensus 139 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc
Confidence 66544444788889999999888888888888999999999998874 456666667889999999999987753 12
Q ss_pred ccCCCCCCcEEEcccCcccccccc----cccCCCCCcEEEcccCcCCCCc------chhhcCCCCCcEEEcccCcCccc-
Q 043317 277 KDLNLTQMEFLYLENNKFSGKIEE----GLLNSTKLYQLDISHNFLSGHI------PHWMGNFSNLEILLMSNNCLEGN- 345 (700)
Q Consensus 277 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~- 345 (700)
....+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+...
T Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred hhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence 334578899999999998865443 3466789999999999876531 12356788999999999887632
Q ss_pred ----chhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcch---hhhCCCCccEEECcCCcccccC
Q 043317 346 ----IPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPD---MLFRSSKLMTLDLRGNNLEGQI 417 (700)
Q Consensus 346 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~N~l~~~~ 417 (700)
.+..+....+|+.|++++|.++..+...+ .+++|++|++++|++++.+|. .+..+++|++|++++|++++..
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 377 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred hcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence 12223445789999999999986665555 699999999999999887653 3678899999999999998654
Q ss_pred C--hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317 418 P--DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495 (700)
Q Consensus 418 ~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (700)
+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------------------------------ 408 (549)
T 2z81_A 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQW------------------------------------------------ 408 (549)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC------------------------------------------------
T ss_pred cchhhhhcCCCCCEEECCCCCCc-cCChhhcc------------------------------------------------
Confidence 3 56889999999999999998 45543322
Q ss_pred ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575 (700)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 575 (700)
+++|+.|++++|+++ .+|..+. ++|++|++++|++++.+ +++++|++|||++|
T Consensus 409 --------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 409 --------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRN 461 (549)
T ss_dssp --------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred --------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCC
Confidence 367899999999998 4454443 68999999999999753 57899999999999
Q ss_pred cCcccCcccccCCCCCCeEeccCCcCcccCCC-CCCCCCcCCCccCCCcCCcCcC
Q 043317 576 RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDESSYRGNLYLCGPT 629 (700)
Q Consensus 576 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gn~~lcg~~ 629 (700)
+++ .+|. ...+++|++|++++|++++.+|. ...+..+......+|++.|.++
T Consensus 462 ~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 462 KLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999 5675 46799999999999999998886 3445555666777787777644
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-47 Score=435.08 Aligned_cols=467 Identities=16% Similarity=0.141 Sum_probs=265.2
Q ss_pred CCCCEEECCCCcCCcccchhccCCCCCCEEeC-CCCcCCCCCChhhccCCCCCcE-----EEc---------c-cCcccc
Q 043317 38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDL-SYNNFEGPCPLSSLANHSKLEV-----LLL---------S-STNNML 101 (700)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~-----L~l---------~-~n~~~~ 101 (700)
.+++.|+|++|.+.|.+|.+|++|++|++|+| ++|.+.|..+.........+.. +.. . ..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 68999999999999999999999999999999 8888876644221111000000 000 0 000000
Q ss_pred cc----------ccCCCCCCCcccEEEeeC--CCCCCcChhhcCCCCCCEEEccCCCCCc-----------------cCc
Q 043317 102 LV----------KTENFLPTFQLKVLELAN--CSLNVVPTFLLHQYDLKYLDLSLNNLVG-----------------DFP 152 (700)
Q Consensus 102 ~~----------~~~~~~~~~~L~~L~L~~--n~l~~~p~~l~~~~~L~~L~Ls~n~l~~-----------------~~~ 152 (700)
.. ..........++.+.+.. |+++.+|..+.++++|++|+|++|++++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 00 000001111233333322 5554477777788888888888888876 256
Q ss_pred hHH-hhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc-Ccc-ccChhHHhhcc-------CCcEEEccCCcCC
Q 043317 153 SWM-LQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN-FIG-TLPQDMGTILK-------KLLVLDISNNHFE 222 (700)
Q Consensus 153 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~~l~-------~L~~L~L~~n~i~ 222 (700)
..+ |.++++|++|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|..+.. ++ +|++|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCCcCC
Confidence 554 3366677777777777666666666667777777777776 665 56666554 33 6666666666666
Q ss_pred ccCCc--cccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCC-CcEEEcccCccccccc
Q 043317 223 GNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-MEFLYLENNKFSGKIE 299 (700)
Q Consensus 223 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~ 299 (700)
.+|. .++++++|+.|++++|+++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|+++ .+|
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 5555 6666666666666666665 444 2345566666666666665 44555555555 666666666665 445
Q ss_pred ccccCCCC--CcEEEcccCcCCCCcchhh---c--CCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCC
Q 043317 300 EGLLNSTK--LYQLDISHNFLSGHIPHWM---G--NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS 372 (700)
Q Consensus 300 ~~~~~~~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 372 (700)
..+..++. |+.|++++|++.+.+|... . .+++|+.|++++|.++...+..+..+++|+.|++++|.++..+..
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 54444432 6666666666655444221 1 223555555555555522222223455555555555555543333
Q ss_pred ccCC--------CCCcEEEccCCcCccCcchhhh--CCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317 373 SFNL--------SSLKHLYVQKNALSGPIPDMLF--RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442 (700)
Q Consensus 373 ~~~l--------~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 442 (700)
.+.. ++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------ 787 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------ 787 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------
Confidence 3311 14444444444444 3344443 44444444444444443 34444444444444444432
Q ss_pred chhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceE
Q 043317 443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL 522 (700)
Q Consensus 443 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 522 (700)
T Consensus 788 -------------------------------------------------------------------------------- 787 (876)
T 4ecn_A 788 -------------------------------------------------------------------------------- 787 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317 523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 523 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 602 (700)
++++|++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+++|++.
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 1234666677777777777777777777777 46666654 47777777777777666666555555556666666554
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-45 Score=416.28 Aligned_cols=517 Identities=21% Similarity=0.164 Sum_probs=350.0
Q ss_pred hhhhchhccCCCCCCEEEeCcc----C-CccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhh
Q 043317 8 LYIFLTGLANLTILQVLDLSGS----S-SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSS 82 (700)
Q Consensus 8 ~~~~p~~~~~l~~L~~L~Lsg~----~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 82 (700)
++.+|..+. +++++|||+++ + +.+|.++++|++|||++|+|+++.|.+|.++++|++|+|++|+++ .+|...
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~ 119 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGA 119 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHH
Confidence 344454332 35667777743 2 345667777777777777777666666777777777777777766 345456
Q ss_pred ccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCC--CcChhhcCCCCCCEEEccCCCCCccCchHHhhcCC
Q 043317 83 LANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN--VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT 160 (700)
Q Consensus 83 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 160 (700)
|.++++|++|++++|++. .++...|.++++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+ ..+.
T Consensus 120 f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~ 197 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLH 197 (635)
T ss_dssp GTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHH
T ss_pred hcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchh
Confidence 677777777777666543 344445666677777777777763 345666666777777777777664333332 2322
Q ss_pred C----CCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcC------CccCCcccc
Q 043317 161 K----LEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHF------EGNIPSSVG 230 (700)
Q Consensus 161 ~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~l~ 230 (700)
+ ...++++.|.+....+..+ ....++.+++.+|.....++...+..+..++...+..+.. .......+.
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 2 3356666666654433332 3334566666666554444444444455555555433221 222233344
Q ss_pred CCCCCcEEEccCccCCCCCc--hHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCC
Q 043317 231 EMKELIILHLSKNNFSEDFS--TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKL 308 (700)
Q Consensus 231 ~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 308 (700)
.+..+...++..+....... ...+..+.+++.+++.++.+.... .+.....++.|++.+|.+.+..+. .+..|
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L 351 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSL 351 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTC
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhh
Confidence 44455555554443321111 111234567888888887775543 344566788888888887754433 45678
Q ss_pred cEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcc--cchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccC
Q 043317 309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG--NIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQK 386 (700)
Q Consensus 309 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~ 386 (700)
+.++++.|.+.... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.+.........+++|+.+++++
T Consensus 352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT
T ss_pred hhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhh
Confidence 88888888776432 34567888999998888753 345566778888999988888877666655888899999888
Q ss_pred CcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCC-CCCchhhhhhhhhhhhccccCCCcc
Q 043317 387 NALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNG-SIPSCFTNMLQWTIENVDLFGGELS 464 (700)
Q Consensus 387 n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~ 464 (700)
|......+ ..+..+.+++.++++.|.+.+..+..+..+++++.|++++|++.+ ..|..|.
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~------------------ 491 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT------------------ 491 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh------------------
Confidence 87765443 456778888999999998888888888888899999998887542 2333332
Q ss_pred CCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCc
Q 043317 465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544 (700)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 544 (700)
.+++|+.|||++|++++.+|..|+++++|+
T Consensus 492 --------------------------------------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 492 --------------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp --------------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred --------------------------------------------------hccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 247889999999999999999999999999
Q ss_pred EEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC-CCCCeEeccCCcCcccC
Q 043317 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL-NFLSNFNVSYNNLSGLI 605 (700)
Q Consensus 545 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~ 605 (700)
+|+|++|+|++..|..|+++++|+.|||++|++++.+|..+..+ ++|++|++++|++++..
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999999999999999999998 68999999999998543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-46 Score=410.13 Aligned_cols=452 Identities=20% Similarity=0.205 Sum_probs=336.9
Q ss_pred CEEEeCcc----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccC
Q 043317 22 QVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97 (700)
Q Consensus 22 ~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n 97 (700)
++|+++++ +|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++..| ..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCC
Confidence 46788844 666665 899999999999999888999999999999999999985444 68999999999999998
Q ss_pred ccccccccCCCCCCCcccEEEeeCCCCCC--cChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCC--CEEEccCCcC-
Q 043317 98 NNMLLVKTENFLPTFQLKVLELANCSLNV--VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKL--EVLFLTNNSF- 172 (700)
Q Consensus 98 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l- 172 (700)
.+. .++.. .+++|++|++++|.++. +|..+..+++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeeccccc
Confidence 765 56654 78899999999999954 678999999999999999999852 24577888 9999999998
Q ss_pred -cccCCCCCCCCC-CccEEeCCCCcCccccChhHHhhccCCcEEEccCCc-------CCccCCccccCCCCCcEEEccCc
Q 043317 173 -TGNLRLPNTKHD-FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNH-------FEGNIPSSVGEMKELIILHLSKN 243 (700)
Q Consensus 173 -~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~L~~n 243 (700)
.+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|. +.+.+| .++.+++|+.|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 666676666554 234566777777666665555556677777777765 444333 4566666666666666
Q ss_pred cCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccc-----cCCCCCcEEEcccCcC
Q 043317 244 NFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGL-----LNSTKLYQLDISHNFL 318 (700)
Q Consensus 244 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l 318 (700)
.+++.....+... ...++|++|++++|++++.+|..+ ..+++|+.+++++|.+
T Consensus 231 ~l~~~~~~~~~~~----------------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 231 ETTWNSFIRILQL----------------------VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp EEEHHHHHHHHHH----------------------HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred ccCHHHHHHHHHH----------------------hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 6544222211110 012355555555555555555555 5666677777777766
Q ss_pred CCCcc-hhhcCC---CCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCcc--
Q 043317 319 SGHIP-HWMGNF---SNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSG-- 391 (700)
Q Consensus 319 ~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~-- 391 (700)
.+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+++..+..+ .+++|++|++++|++++
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 233 334333 56777777777765322 12567778888888888877666665 78888888888888876
Q ss_pred CcchhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCc
Q 043317 392 PIPDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG 470 (700)
Q Consensus 392 ~~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 470 (700)
.+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++..|..+
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l------------------------- 419 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL------------------------- 419 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC-------------------------
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh-------------------------
Confidence 5567888999999999999999974555 47888999999999999875443221
Q ss_pred ccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC
Q 043317 471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH 550 (700)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 550 (700)
.+.|+.|++++|+++ .+|..+..+++|++|++++
T Consensus 420 ---------------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 420 ---------------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred ---------------------------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCC
Confidence 156888999999999 7888888999999999999
Q ss_pred ccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 551 NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 551 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
|++++..+..|..+++|+.|++++|++++..+
T Consensus 454 N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 454 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99995444459999999999999999997655
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-46 Score=421.89 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=129.6
Q ss_pred CcCccccChhHHhhccCCcEEEccCCcCCcc-----------------CCcccc--CCCCCcEEEccCccCCCCCchHHH
Q 043317 194 NNFIGTLPQDMGTILKKLLVLDISNNHFEGN-----------------IPSSVG--EMKELIILHLSKNNFSEDFSTPFL 254 (700)
Q Consensus 194 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~ 254 (700)
|++++ +|..+.. +++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+
T Consensus 193 n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l- 269 (636)
T 4eco_A 193 NNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269 (636)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred CCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence 44444 5555444 55555555555555543 555555 55555555555555555555443
Q ss_pred hcCCcCcEEEcCCcc-ccc-ccccccCCC------CCCcEEEcccCcccccccc--cccCCCCCcEEEcccCcCCCCcch
Q 043317 255 TGCISLWFLDLSDNN-FYG-QFFSKDLNL------TQMEFLYLENNKFSGKIEE--GLLNSTKLYQLDISHNFLSGHIPH 324 (700)
Q Consensus 255 ~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~ 324 (700)
.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+..+++|++|++++|+++|.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 345555555555555 555 444444443 55556666666555 4454 55555566666666665555555
Q ss_pred hhcCCCCCcEEEcccCcCcccchhhccCCCC-CCEEEccCccCcccCCCcc-C--CCCCcEEEccCCcCccCcchhhh--
Q 043317 325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRT-LKLLSVSENYLSGSMTSSF-N--LSSLKHLYVQKNALSGPIPDMLF-- 398 (700)
Q Consensus 325 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~-~--l~~L~~L~l~~n~l~~~~~~~~~-- 398 (700)
.+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++.. +..+ . +++|++|++++|++++..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 5555555666666666555 45555555555 66666666655532 2222 2 23556666666666555555554
Q ss_pred -----CCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317 399 -----RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 399 -----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
.+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 4555666666666655332233344556666666666555
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-45 Score=416.77 Aligned_cols=416 Identities=18% Similarity=0.219 Sum_probs=243.1
Q ss_pred CcccEEEeeCCCC-CCcChhhcCCCCCCEEEc-cCCCCCccCchHHh---------------------------------
Q 043317 112 FQLKVLELANCSL-NVVPTFLLHQYDLKYLDL-SLNNLVGDFPSWML--------------------------------- 156 (700)
Q Consensus 112 ~~L~~L~L~~n~l-~~~p~~l~~~~~L~~L~L-s~n~l~~~~~~~~~--------------------------------- 156 (700)
.+++.|+|+++++ +.+|..++++++|++|+| ++|.+.|..|....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 3678888888888 678888888888888888 77766544221100
Q ss_pred -----------------hcCCCCCEEEcc--CCcCcccCCCCCCCCCCccEEeCCCCcCcc-----------------cc
Q 043317 157 -----------------QNNTKLEVLFLT--NNSFTGNLRLPNTKHDFLHHLDASSNNFIG-----------------TL 200 (700)
Q Consensus 157 -----------------~~l~~L~~L~L~--~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------~~ 200 (700)
.....++.+.+. .|.+++ +|..+..+++|+.|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 001112222222 244554 55555556666666666666554 25
Q ss_pred ChhHH-hhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCcc-CCC-CCchHHHh------cCCcCcEEEcCCcccc
Q 043317 201 PQDMG-TILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN-FSE-DFSTPFLT------GCISLWFLDLSDNNFY 271 (700)
Q Consensus 201 ~~~~~-~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~------~~~~L~~L~L~~n~l~ 271 (700)
|..+. ..+++|++|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+.. .+++|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 55542 125566666666666555666666666666666666665 554 44443321 1235666666666665
Q ss_pred ccccc--ccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCC-CcEEEcccCcCcccchh
Q 043317 272 GQFFS--KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSN-LEILLMSNNCLEGNIPV 348 (700)
Q Consensus 272 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~ 348 (700)
.+|. .+..+++|+.|++++|+++ .+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 4444 5555666666666666655 444 5555566666666666655 55555555555 666666666655 4555
Q ss_pred hccCCCC--CCEEEccCccCcccCCCcc------CCCCCcEEEccCCcCccCcchhh-hCCCCccEEECcCCcccccCCh
Q 043317 349 QLLNHRT--LKLLSVSENYLSGSMTSSF------NLSSLKHLYVQKNALSGPIPDML-FRSSKLMTLDLRGNNLEGQIPD 419 (700)
Q Consensus 349 ~~~~~~~--L~~L~l~~n~l~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~N~l~~~~~~ 419 (700)
.+..+.. |+.|++++|.+++.++... .+++|+.|++++|+++ .+|..+ ..+++|+.|++++|+++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 4444432 6666666666655443221 2345666666666665 333332 35556666666666665 3333
Q ss_pred hhhc--------cCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccC
Q 043317 420 QICQ--------LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDM 491 (700)
Q Consensus 420 ~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (700)
.+.. +++|+.|+|++|+++ .+|..+..
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-------------------------------------------- 749 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-------------------------------------------- 749 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------------------------
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------------------------------
Confidence 3222 125666666666555 34433320
Q ss_pred CCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC------ccCccccCccccccc
Q 043317 492 FTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH------NCLSGSIPRSFSNLQ 565 (700)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~ 565 (700)
..+++|+.|+|++|.+++ +|..++.+++|+.|+|++ |++.+.+|..|.+++
T Consensus 750 ----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 750 ----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp ----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred ----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 124677778888888876 677777888888888865 677777888888888
Q ss_pred CCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317 566 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 566 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 606 (700)
+|+.|+|++|++ +.+|..+. ++|+.|||++|++....+
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 888888888888 56777654 578888888887765443
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.3e-44 Score=403.33 Aligned_cols=516 Identities=20% Similarity=0.171 Sum_probs=371.0
Q ss_pred CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317 30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL 109 (700)
Q Consensus 30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 109 (700)
+|..+. +++++|||++|+|+++.+.+|.++++|++|+|++|+|+ .++..+|.++++|++|+|++|.+ ..++...|.
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~ 121 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QSLALGAFS 121 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC-CEECGGGGT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC-CCCCHHHhc
Confidence 555442 47999999999999888889999999999999999998 45557899999999999998764 456666788
Q ss_pred CCCcccEEEeeCCCCCCcCh-hhcCCCCCCEEEccCCCCCcc-CchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCC--
Q 043317 110 PTFQLKVLELANCSLNVVPT-FLLHQYDLKYLDLSLNNLVGD-FPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF-- 185 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~~~p~-~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-- 185 (700)
++++|++|++++|+++.+|. .+.++++|++|++++|.+++. +|.. +..+++|++|++++|++++..+..+..+.+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhh
Confidence 99999999999999977765 477889999999999998743 4444 458899999999999888776666544333
Q ss_pred --ccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc-cCCccccCCCCCcEEEccCccCCC-----CCchHHHhcC
Q 043317 186 --LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG-NIPSSVGEMKELIILHLSKNNFSE-----DFSTPFLTGC 257 (700)
Q Consensus 186 --L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~ 257 (700)
...++++.|.+. .++...+. ...++.+++.+|.... ..+..+..+..++...+..+.... ......+..+
T Consensus 201 ~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 201 LLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 346778888776 44544444 3356777777775542 223445666777666554432221 1111112334
Q ss_pred CcCcEEEcCCccccc---ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcE
Q 043317 258 ISLWFLDLSDNNFYG---QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEI 334 (700)
Q Consensus 258 ~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 334 (700)
..+...++..+.... .....+....+++.+.+.++.+.... .+.....++.|++++|.+.+..+ ..+..|+.
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~ 353 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKR 353 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhh
Confidence 455555554433221 22233445667778888877776432 34556778888888887765433 24567778
Q ss_pred EEcccCcCcccchhhccCCCCCCEEEccCccCcccCCC--cc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC
Q 043317 335 LLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS--SF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN 411 (700)
Q Consensus 335 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N 411 (700)
+++.+|.+... .....+++|+.+++++|.+...... .+ .+.+|+.+++..|.... .+..+..+++|+.++++.|
T Consensus 354 l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 354 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp EEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTS
T ss_pred cccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhc
Confidence 88888776532 2345677888888888877643322 22 67778888888887763 4555677788888888877
Q ss_pred cccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccccc
Q 043317 412 NLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRD 490 (700)
Q Consensus 412 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (700)
......+ ..+..+++++.+++++|.+.+..|..+..
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~------------------------------------------- 467 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------------------- 467 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-------------------------------------------
Confidence 7654443 45677888888888888877655544332
Q ss_pred CCCCcccceEEEeeccccccccCccccccceEECCCCcC-cccCCccccCcCCCcEEeCCCccCccccCcccccccCCCE
Q 043317 491 MFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNEL-TGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES 569 (700)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 569 (700)
++.++.|++++|.+ .+..|..|+.+++|++|+|++|++++.+|..|+++++|++
T Consensus 468 -------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 468 -------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp -------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 36788999999985 4568899999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCC-CC-CCcCCCccCCCcCCcCc
Q 043317 570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG-QY-STFDESSYRGNLYLCGP 628 (700)
Q Consensus 570 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~~~~~~~~gn~~lcg~ 628 (700)
|+|++|+|++..|..|..+++|++||+++|++++.+|..- .+ ..+......+||+-|.+
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999999999999999999999999999999988632 12 34445566777777754
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-43 Score=393.25 Aligned_cols=463 Identities=20% Similarity=0.178 Sum_probs=322.6
Q ss_pred CCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCccc
Q 043317 36 YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK 115 (700)
Q Consensus 36 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 115 (700)
.+...+++|+++|++++ +|..+. ++|++|++++|++++ ++...|.++++|++|++++|.+. .++++.|.++++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCC
Confidence 34455899999999985 565553 889999999999984 45467899999999999887654 45555788888999
Q ss_pred EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCc--cEEeCC
Q 043317 116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL--HHLDAS 192 (700)
Q Consensus 116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~ 192 (700)
+|++++|+++.+|.. .+++|++|++++|++++ .+|..+ .++++|++|++++|.+++ ..+..+++| +.|+++
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEE
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCcccc---CchhhhhhceeeEEEee
Confidence 999999999888877 78899999999999874 233444 588888888888887763 223333333 555555
Q ss_pred CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCC-CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc--
Q 043317 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMK-ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN-- 269 (700)
Q Consensus 193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-- 269 (700)
+|.+.. ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|.
T Consensus 178 ~n~l~~-----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 178 LVSYHI-----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp ESSCCC-----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred cccccc-----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence 555400 333333333332 011234444444443333333344455555555542
Q ss_pred ---cccccccccCCCCCCcEEEcccCcccccc----cccccCCCCCcEEEcccCcCCCCcchhh-----cCCCCCcEEEc
Q 043317 270 ---FYGQFFSKDLNLTQMEFLYLENNKFSGKI----EEGLLNSTKLYQLDISHNFLSGHIPHWM-----GNFSNLEILLM 337 (700)
Q Consensus 270 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L 337 (700)
+.+ ....+..+++|+.++++++.+.+.. +.. ...++|++|++++|.+++.+|..+ ..++.|+.+++
T Consensus 235 ~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 235 CQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp HHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred cchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 111 1123445566666666665554321 111 123478888888888877777666 56666666666
Q ss_pred ccCcCcccch-hhcc---CCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcc
Q 043317 338 SNNCLEGNIP-VQLL---NHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL 413 (700)
Q Consensus 338 ~~n~l~~~~~-~~~~---~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l 413 (700)
..+.+ .+| ..+. ...+|+.|++++|.+...... ..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCC-SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred cccee--ecChhhhhhhhccCcceEEEccCCCcccccCc-cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence 66666 233 2222 235788889988887654321 2678999999999999988899999999999999999999
Q ss_pred ccc--CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccC
Q 043317 414 EGQ--IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDM 491 (700)
Q Consensus 414 ~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (700)
++. +|..+..+++|++|++++|++++.+|....
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--------------------------------------------- 424 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC--------------------------------------------- 424 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC---------------------------------------------
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChhhh---------------------------------------------
Confidence 863 356788999999999999999875554311
Q ss_pred CCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEe
Q 043317 492 FTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLD 571 (700)
Q Consensus 492 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 571 (700)
..++.|+.|++++|.+++.+|..+. ++|++|+|++|+++ .+|..+.++++|+.|+
T Consensus 425 ----------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 425 ----------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479 (562)
T ss_dssp ----------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred ----------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence 1247789999999999987777665 79999999999999 6777777999999999
Q ss_pred CCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317 572 LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 572 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 607 (700)
|++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 480 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999954444499999999999999999977664
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.9e-43 Score=387.13 Aligned_cols=458 Identities=20% Similarity=0.216 Sum_probs=329.5
Q ss_pred CCCCCEEEeCcc----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEE
Q 043317 18 LTILQVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLL 93 (700)
Q Consensus 18 l~~L~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 93 (700)
+...++++++++ +|..+. ++|++|+|++|.+++..|.+|.++++|++|++++|++++..| ..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEE
Confidence 445589999954 566554 899999999999999988999999999999999999995444 6799999999999
Q ss_pred cccCccccccccCCCCCCCcccEEEeeCCCCCCc--ChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCC--CEEEccC
Q 043317 94 LSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV--PTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKL--EVLFLTN 169 (700)
Q Consensus 94 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~ 169 (700)
+++|.+. .++.. .+++|++|++++|+++.+ |..+.++++|++|++++|.+++. . +..+++| ++|++++
T Consensus 107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 107 VSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDL 178 (562)
T ss_dssp CTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEE
T ss_pred CCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeec
Confidence 9998865 56654 788999999999999765 47899999999999999999842 1 2355666 9999999
Q ss_pred CcC--cccCCCCCCCCC-CccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC----ccCCccccCCCCCcEEEccC
Q 043317 170 NSF--TGNLRLPNTKHD-FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE----GNIPSSVGEMKELIILHLSK 242 (700)
Q Consensus 170 n~l--~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~ 242 (700)
|.+ ++..+..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+.. ......+..+++|+.+++++
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 999 766666655443 11245667777666555554444666777777766421 01122345555666666655
Q ss_pred ccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccc-----cCCCCCcEEEcccCc
Q 043317 243 NNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGL-----LNSTKLYQLDISHNF 317 (700)
Q Consensus 243 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~ 317 (700)
+.+.+...... . .. ...++|++|++++|.+++.+|..+ ..++.|+.++++.+.
T Consensus 259 ~~l~~~~~~~~--------------------~-~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 259 IETTWKCSVKL--------------------F-QF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp EEECHHHHHHH--------------------H-HH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred CcCcHHHHHHH--------------------H-Hh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 55433111110 0 00 112356666666666665555554 455555555555555
Q ss_pred CCCCcc-hhhcC---CCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCcc-
Q 043317 318 LSGHIP-HWMGN---FSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSG- 391 (700)
Q Consensus 318 l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~- 391 (700)
+ .+| .++.. ..+|++|++++|.+.... ....+++|++|++++|.+++..+..+ .+++|++|++++|++++
T Consensus 317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392 (562)
T ss_dssp C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence 5 233 22222 256788888887775321 12567788888888888888766666 78888999999998886
Q ss_pred -CcchhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCC
Q 043317 392 -PIPDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPL 469 (700)
Q Consensus 392 -~~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 469 (700)
.+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------------------ 448 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------------------------ 448 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC------------------------
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh------------------------
Confidence 3356788899999999999999974554 57889999999999999875433221
Q ss_pred cccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCC
Q 043317 470 GFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLS 549 (700)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 549 (700)
.+.|+.|+|++|+++ .+|..+..+++|++|+|+
T Consensus 449 ----------------------------------------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 449 ----------------------------------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp ----------------------------------------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred ----------------------------------------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence 146888999999999 677777799999999999
Q ss_pred CccCccccCcccccccCCCEEeCCCCcCcccCcc
Q 043317 550 HNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA 583 (700)
Q Consensus 550 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 583 (700)
+|++++..+..|+.+++|+.|++++|++++..|.
T Consensus 482 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999954444499999999999999999986653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.8e-42 Score=370.54 Aligned_cols=391 Identities=21% Similarity=0.220 Sum_probs=255.9
Q ss_pred ccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccC-CCCCCCCCCccEEeCC
Q 043317 114 LKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL-RLPNTKHDFLHHLDAS 192 (700)
Q Consensus 114 L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~ 192 (700)
-+.++.++++++.+|. + .++|++|++++|.+++..|..+ .++++|++|++++|.+.+.+ +..+..+++|++|+++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3457777777777776 2 2577777777777774434433 46777777777777665333 3445555566666666
Q ss_pred CCcCccccChhHHhhccCCcEEEccCCcCCccCCcc--ccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccc
Q 043317 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSS--VGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270 (700)
Q Consensus 193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 270 (700)
+|.+.+..|..+.. +++|++|++++|.+++..+.. +.++++|++|++++|++++..|..++..+++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 66555443444433 455555555555555433322 555555555555555555444444334445555555555544
Q ss_pred ccccccccCCCCCCcEEEcccCcccccccccccCC--CCCcEEEcccCcCCCCcchh--------hcCCCCCcEEEcccC
Q 043317 271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS--TKLYQLDISHNFLSGHIPHW--------MGNFSNLEILLMSNN 340 (700)
Q Consensus 271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n 340 (700)
.+ ..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|
T Consensus 167 ~~------------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 167 KS------------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp SC------------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred cc------------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 44 444444333 34555555555555433222 224456677777777
Q ss_pred cCcccchhhccCC---CCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhh--CCCCccEEECcCCcccc
Q 043317 341 CLEGNIPVQLLNH---RTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLF--RSSKLMTLDLRGNNLEG 415 (700)
Q Consensus 341 ~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~N~l~~ 415 (700)
.+.+..|..+... .+|+.|++++|.+.+..... +.+.+..+..+. ..++|++|++++|++++
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred cccccchhhhhccccccceeeEeeccccccccccch-------------hhhccCcccccccccccCceEEEecCccccc
Confidence 7666666555433 56677777766654432211 112111122222 23688888888888888
Q ss_pred cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317 416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495 (700)
Q Consensus 416 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (700)
..|..+..+++|++|++++|++++..|..+.+
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------ 321 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------------------------------------------------ 321 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------------------------------------------------
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcC------------------------------------------------
Confidence 88888888889999999998888666655543
Q ss_pred ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575 (700)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 575 (700)
++.|+.|+|++|.+++..|..++.+++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 322 --------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 322 --------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp --------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 367888999999998888889999999999999999999888999999999999999999
Q ss_pred cCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCc
Q 043317 576 RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 614 (700)
Q Consensus 576 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 614 (700)
++++..+..+..+++|++|++++|++++.+|...++..|
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred ccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 999888888899999999999999999999875554443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-40 Score=361.24 Aligned_cols=388 Identities=18% Similarity=0.149 Sum_probs=302.2
Q ss_pred EEEcccCccccccccCCCCCCCcccEEEeeCCCCCCc-ChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccC
Q 043317 91 VLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV-PTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTN 169 (700)
Q Consensus 91 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 169 (700)
.++.+++. ...++. + .++|++|++++|.++.+ |..+.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus 14 ~~~c~~~~-l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRG-LHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSC-CSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCC-cccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45555543 233443 1 25899999999999766 778999999999999999998788776677999999999999
Q ss_pred CcCcccCCCCCCCCCCccEEeCCCCcCccccChh-HHhhccCCcEEEccCCcCCccCCcc-ccCCCCCcEEEccCccCCC
Q 043317 170 NSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQD-MGTILKKLLVLDISNNHFEGNIPSS-VGEMKELIILHLSKNNFSE 247 (700)
Q Consensus 170 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~ 247 (700)
|.+++..|..+..+++|++|++++|.+.+.++.. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|++.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999999999999999999999999998755543 2344889999999999999887876 8999999999999999988
Q ss_pred CCchHHHhcC--CcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchh
Q 043317 248 DFSTPFLTGC--ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHW 325 (700)
Q Consensus 248 ~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 325 (700)
..+..+ ..+ .+|+.|++++|.+.+..+..+. ......+..+++|++|++++|++++..|..
T Consensus 169 ~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 169 ICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred cChhhh-hccccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhh
Confidence 766554 223 5677777777776554332211 001112334456777777777766666655
Q ss_pred hcCC---CCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc---CCCCCcEEEccCCcCccCcchhhhC
Q 043317 326 MGNF---SNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF---NLSSLKHLYVQKNALSGPIPDMLFR 399 (700)
Q Consensus 326 ~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~ 399 (700)
+... ++|+.|++++|.+.+... ..+.+.+.....+ ..++|++|++++|++++..|..+..
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred hhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 5443 667777777776553211 1122222222222 3578999999999999888888999
Q ss_pred CCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccc
Q 043317 400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYN 479 (700)
Q Consensus 400 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (700)
+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------- 345 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-------------------------------- 345 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------------
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------------
Confidence 999999999999999888889999999999999999997655555543
Q ss_pred cccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCc
Q 043317 480 STLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPR 559 (700)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 559 (700)
+++|+.|+|++|++++..|..+..+++|++|++++|++++..+.
T Consensus 346 ------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 346 ------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ------------------------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 37788999999999999999999999999999999999987778
Q ss_pred ccccccCCCEEeCCCCcCcccCc
Q 043317 560 SFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 560 ~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
.|+.+++|+.|++++|++++.+|
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhccCCcccEEEccCCCcccCCC
Confidence 88999999999999999998877
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-41 Score=365.39 Aligned_cols=403 Identities=24% Similarity=0.314 Sum_probs=224.6
Q ss_pred CCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCccc
Q 043317 36 YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK 115 (700)
Q Consensus 36 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 115 (700)
..++|++|++++|.+ +.+|.+++++++|++|++++|++.|.+| ..++.+++|+.+++..|.. .+++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~l~ 74 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQAH 74 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HTCS
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cCCC
Confidence 457888899999988 6888889999999999999998887777 4677777777777765531 3678
Q ss_pred EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc
Q 043317 116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN 195 (700)
Q Consensus 116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 195 (700)
+|++++|+++.+|.. .++|++|++++|.+++ +|. ..++|++|++++|++++
T Consensus 75 ~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~--------------------- 125 (454)
T 1jl5_A 75 ELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA--------------------- 125 (454)
T ss_dssp EEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC---------------------
T ss_pred EEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc---------------------
Confidence 888888888777762 3678888888888874 664 23567777776666553
Q ss_pred CccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc
Q 043317 196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF 275 (700)
Q Consensus 196 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 275 (700)
+|.. .++|++|++++|++++ +| .++++++|++|++++|++++ +|. ..++|++|++++|++.+. +
T Consensus 126 ----l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~ 189 (454)
T 1jl5_A 126 ----LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P 189 (454)
T ss_dssp ----CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C
T ss_pred ----ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c
Confidence 1110 1356666666666664 44 36666666666666666654 332 134666666666666652 3
Q ss_pred cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCC
Q 043317 276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT 355 (700)
Q Consensus 276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 355 (700)
.+..+++|+.|++++|++++ +|.. .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|. .+++
T Consensus 190 -~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~ 258 (454)
T 1jl5_A 190 -ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPS 258 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTT
T ss_pred -cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccc
Confidence 46667777777777777664 3322 246777777777776 4553 6677777777777777764 333 2367
Q ss_pred CCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhcc-CCCCEEecCC
Q 043317 356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQL-RRLGMMDLSH 434 (700)
Q Consensus 356 L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~ 434 (700)
|+.|++++|.+++.+.. +++|++|++++|++++ +|.. .++|++|++++|++++. + .+ ++|++|++++
T Consensus 259 L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~ 326 (454)
T 1jl5_A 259 LEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSN 326 (454)
T ss_dssp CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCS
T ss_pred cCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCC
Confidence 77777777777764332 3677777777777765 2211 25777777777777642 2 22 4777788877
Q ss_pred CccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCc
Q 043317 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGS 514 (700)
Q Consensus 435 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 514 (700)
|++++ +|..
T Consensus 327 N~l~~-lp~~---------------------------------------------------------------------- 335 (454)
T 1jl5_A 327 NKLIE-LPAL---------------------------------------------------------------------- 335 (454)
T ss_dssp SCCSC-CCCC----------------------------------------------------------------------
T ss_pred Ccccc-cccc----------------------------------------------------------------------
Confidence 77764 3321
Q ss_pred cccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcc--ccCcccccccCCCEEeCCCCcCcccCcccccCCCCCC
Q 043317 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSG--SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLS 592 (700)
Q Consensus 515 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 592 (700)
+++|+.|++++|.++ .+|. .+++|++|++++|++++ .+|.+++++ +.|.+.+.+|.. +++|+
T Consensus 336 -~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~ 399 (454)
T 1jl5_A 336 -PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLK 399 (454)
T ss_dssp -CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC----------------
T ss_pred -CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCC
Confidence 245667778888777 3554 36777888888888776 566655433 345566666653 36677
Q ss_pred eEeccCCcCcc--cCCC
Q 043317 593 NFNVSYNNLSG--LIPD 607 (700)
Q Consensus 593 ~L~ls~N~l~~--~~p~ 607 (700)
+|++++|++++ .+|.
T Consensus 400 ~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 400 QLHVETNPLREFPDIPE 416 (454)
T ss_dssp -----------------
T ss_pred EEECCCCcCCccccchh
Confidence 77788887776 5553
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-39 Score=347.87 Aligned_cols=409 Identities=20% Similarity=0.236 Sum_probs=198.4
Q ss_pred chhccCCCCCCEEEeC----ccCCccccCCCCCCEEECCCCcCCcccchhccCCCCC-------------CEEeCCCCcC
Q 043317 12 LTGLANLTILQVLDLS----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSL-------------EYLDLSYNNF 74 (700)
Q Consensus 12 p~~~~~l~~L~~L~Ls----g~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l 74 (700)
|+.+ +.++|++|+++ |.+|++++++++|++|++++|.++|.+|..++++++| ++|++++|.+
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 4444 46899999999 6799999999999999999999999999999999876 6666666665
Q ss_pred CCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchH
Q 043317 75 EGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSW 154 (700)
Q Consensus 75 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~ 154 (700)
++ +|. -. ++|++|++++|.++.+|.. .++|++|++++|+++ .+|.
T Consensus 84 ~~-lp~----~~-------------------------~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~- 128 (454)
T 1jl5_A 84 SS-LPE----LP-------------------------PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSD- 128 (454)
T ss_dssp SC-CCS----CC-------------------------TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCS-
T ss_pred cc-CCC----Cc-------------------------CCCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccC-
Confidence 53 221 01 3556666666666555542 256667777777666 3432
Q ss_pred HhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCC
Q 043317 155 MLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKE 234 (700)
Q Consensus 155 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 234 (700)
..++|++|++++|++++ +| .+..+++|++|++++|++.+ +|.. .++|++|++++|++++ +| .++++++
T Consensus 129 ---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~ 196 (454)
T 1jl5_A 129 ---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPF 196 (454)
T ss_dssp ---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred ---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCC
Confidence 12567777777777665 44 46667777777777777663 5543 2478888888888875 45 5788888
Q ss_pred CcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcc
Q 043317 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS 314 (700)
Q Consensus 235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 314 (700)
|+.|++++|++++ +|. ..++|++|++++|.+. .+| .+..+++|++|++++|++++ +|.. .++|++|+++
T Consensus 197 L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 265 (454)
T 1jl5_A 197 LTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVR 265 (454)
T ss_dssp CCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECC
T ss_pred CCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECC
Confidence 8888888888765 332 1346666666666665 233 25556666666666666653 2221 2455666666
Q ss_pred cCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcc
Q 043317 315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIP 394 (700)
Q Consensus 315 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 394 (700)
+|++++ +|.. .++|++|++++|+++ +.... .++|++|++++|++++ ++
T Consensus 266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~------------------------~l~~~---~~~L~~L~l~~N~l~~-i~ 313 (454)
T 1jl5_A 266 DNYLTD-LPEL---PQSLTFLDVSENIFS------------------------GLSEL---PPNLYYLNASSNEIRS-LC 313 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCS------------------------EESCC---CTTCCEEECCSSCCSE-EC
T ss_pred CCcccc-cCcc---cCcCCEEECcCCccC------------------------cccCc---CCcCCEEECcCCcCCc-cc
Confidence 665553 2321 244555555555554 32110 1345555555555543 11
Q ss_pred hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317 395 DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI 474 (700)
Q Consensus 395 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (700)
. ..++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .
T Consensus 314 ~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~--------------------------- 355 (454)
T 1jl5_A 314 D---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L--------------------------- 355 (454)
T ss_dssp C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C---------------------------
T ss_pred C---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h---------------------------
Confidence 1 01356666666666653 3332 356666666666665 2332 0
Q ss_pred ccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcc--cCCccccCcCCCcEEeCCCcc
Q 043317 475 GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG--NVPSEIGDLQKIRGLNLSHNC 552 (700)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~ 552 (700)
+++|+.|++++|++++ .+|..++. ++.|.
T Consensus 356 -----------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~ 386 (454)
T 1jl5_A 356 -----------------------------------------PQNLKQLHVEYNPLREFPDIPESVED--------LRMNS 386 (454)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC
T ss_pred -----------------------------------------hhhccEEECCCCCCCcCCCChHHHHh--------hhhcc
Confidence 1455666666666665 45554433 23455
Q ss_pred CccccCcccccccCCCEEeCCCCcCcc--cCcccccCCCCCCeEeccCCcCcccCCC
Q 043317 553 LSGSIPRSFSNLQMIESLDLSNNRLSG--QIPAQLIELNFLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 553 l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 607 (700)
+.+.+|.. +++|+.||+++|++++ .+|.+ ++.|.+++|.+.+.+|.
T Consensus 387 ~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 387 HLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 66666653 4677788888888876 55543 45566777777776653
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-38 Score=340.15 Aligned_cols=321 Identities=20% Similarity=0.175 Sum_probs=236.4
Q ss_pred cEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcC
Q 043317 187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLS 266 (700)
Q Consensus 187 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 266 (700)
+.++.+++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+ .++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECC
Confidence 56788888776 6777653 578899999999988778888888999999999988877656554 568888888888
Q ss_pred CcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccc
Q 043317 267 DNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI 346 (700)
Q Consensus 267 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 346 (700)
+|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88888777777788888888888888888777778888888888888888888777777888888888888888888766
Q ss_pred hhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC
Q 043317 347 PVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR 425 (700)
Q Consensus 347 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~ 425 (700)
+..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|...+.+|.......+|++|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 6777888888888888888877776666 677788888877777666666666666777777777777754445666777
Q ss_pred CCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeec
Q 043317 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTK 505 (700)
Q Consensus 426 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 505 (700)
+|+.|++++|++++..+..|..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------------------------- 270 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHE---------------------------------------------------------- 270 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTT----------------------------------------------------------
T ss_pred ccCeeECCCCcCCccChhhccc----------------------------------------------------------
Confidence 7777777777665433332222
Q ss_pred cccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317 506 NRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580 (700)
Q Consensus 506 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 580 (700)
++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 271 ----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 ----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp ----------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ----------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 24566666666666666666666666666666666666655555666666666666666666543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-37 Score=332.07 Aligned_cols=353 Identities=21% Similarity=0.169 Sum_probs=203.9
Q ss_pred CCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317 110 PTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 189 (700)
.+++|++|++++|.++.+| .+..+++|++|++++|++++ +| +..+++|++|++++|.+++. .+..++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~----- 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLT----- 106 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCT-----
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCC-----
Confidence 3444555555555554444 34445555555555555542 32 23444455555555544432 133344
Q ss_pred eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269 (700)
Q Consensus 190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 269 (700)
+|++|++++|++++ ++ ++.+++|++|++++|++++. + +..+++|++|++++|+
T Consensus 107 --------------------~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 107 --------------------KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNK 159 (457)
T ss_dssp --------------------TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCS
T ss_pred --------------------cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCC
Confidence 44444444444443 12 44444444444444444432 1 2334455555555553
Q ss_pred cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317 270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349 (700)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 349 (700)
..+.. .+..+++|+.|++++|++++. | +..+++|+.|++++|++++. .++.+++|++|++++|++++ +|
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-- 228 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-- 228 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred ccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--
Confidence 33222 244455555666666655542 2 45556666666666666543 25556666666666666664 33
Q ss_pred ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 429 (700)
+..+++|+.|++++|.+++.+.. .+++|+.|++++| +|+.|++++|++.+.+| +..+++|+.
T Consensus 229 ~~~l~~L~~L~l~~N~l~~~~~~--~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~ 290 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE 290 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCCCT--TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred ccccCCCCEEEeeCCcCCCcCHH--HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence 55666666666666666665422 3566666666554 34456666666665555 356677777
Q ss_pred EecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccc
Q 043317 430 MDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYE 509 (700)
Q Consensus 430 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 509 (700)
|++++|+..+.+|.....+..
T Consensus 291 L~Ls~n~~l~~l~~~~~~L~~----------------------------------------------------------- 311 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQAAGITE----------------------------------------------------------- 311 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSC-----------------------------------------------------------
T ss_pred EECCCCcccceeccCCCcceE-----------------------------------------------------------
Confidence 777777766555432211110
Q ss_pred cccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC
Q 043317 510 LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN 589 (700)
Q Consensus 510 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 589 (700)
.....++.|+.|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|+++|. ..+.
T Consensus 312 -L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~ 374 (457)
T 3bz5_A 312 -LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI 374 (457)
T ss_dssp -CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred -echhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence 0012236788999999999974 3 8999999999999999986 24677788999999987 2445
Q ss_pred CCCeEeccCCcCcccCCC
Q 043317 590 FLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 590 ~L~~L~ls~N~l~~~~p~ 607 (700)
.|..+++++|+++|.+|.
T Consensus 375 ~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 375 TMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ECCCBCCBTTBEEEECCT
T ss_pred ecCccccccCcEEEEcCh
Confidence 678899999999999996
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.4e-36 Score=324.38 Aligned_cols=345 Identities=26% Similarity=0.308 Sum_probs=199.8
Q ss_pred CCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEe
Q 043317 111 TFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD 190 (700)
Q Consensus 111 ~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 190 (700)
+.+++.|+++++.+..+|. +..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 3466777777777766664 556677777777777776 4443 3466777777777776664433 55555555555
Q ss_pred CCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccc
Q 043317 191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270 (700)
Q Consensus 191 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 270 (700)
+++|.+.+ ++. + ..+++|++|++++|.+.+ ++ .+..+++|+.|+++ |.+.+..
T Consensus 119 L~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--------------------- 171 (466)
T 1o6v_A 119 LFNNQITD-IDP-L-KNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--------------------- 171 (466)
T ss_dssp CCSSCCCC-CGG-G-TTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG---------------------
T ss_pred CCCCCCCC-ChH-H-cCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch---------------------
Confidence 55555542 222 2 225556666666555553 22 35555555555554 2332211
Q ss_pred ccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhc
Q 043317 271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350 (700)
Q Consensus 271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 350 (700)
.+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+++. ..+
T Consensus 172 ------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 239 (466)
T 1o6v_A 172 ------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTL 239 (466)
T ss_dssp ------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred ------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhh
Confidence 133444444444444444432 124455555555555555554433 44555566666666555532 235
Q ss_pred cCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEE
Q 043317 351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMM 430 (700)
Q Consensus 351 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 430 (700)
..+++|+.|++++|.+++..+ ...+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 555666666666666655443 2256666666666666664333 5566677777777777664333 5666777777
Q ss_pred ecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccccc
Q 043317 431 DLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYEL 510 (700)
Q Consensus 431 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 510 (700)
++++|++++..| +.
T Consensus 315 ~L~~n~l~~~~~--~~---------------------------------------------------------------- 328 (466)
T 1o6v_A 315 TLYFNNISDISP--VS---------------------------------------------------------------- 328 (466)
T ss_dssp ECCSSCCSCCGG--GG----------------------------------------------------------------
T ss_pred ECcCCcCCCchh--hc----------------------------------------------------------------
Confidence 777776664332 11
Q ss_pred ccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317 511 YNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579 (700)
Q Consensus 511 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 579 (700)
.+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 329 ----~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 329 ----SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ----GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ----cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 135666677777777654 356777777777777777776665 6777777777777777775
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.9e-36 Score=322.35 Aligned_cols=345 Identities=25% Similarity=0.313 Sum_probs=266.1
Q ss_pred CCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEE
Q 043317 135 YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL 214 (700)
Q Consensus 135 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 214 (700)
++++.|+++++.+. .+|. +..+++|++|++++|.+++ ++. + ..+++|++|
T Consensus 46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~-------------------------~~~-~-~~l~~L~~L 95 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTD-------------------------ITP-L-KNLTKLVDI 95 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCC-------------------------CGG-G-TTCTTCCEE
T ss_pred ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCC-------------------------chh-h-hccccCCEE
Confidence 45556666665554 3443 2345555555555554442 222 2 235666666
Q ss_pred EccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcc
Q 043317 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKF 294 (700)
Q Consensus 215 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 294 (700)
++++|.+.+..+ +.++++|++|++++|.+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|+++ |.+
T Consensus 96 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 96 LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQV 167 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESC
T ss_pred ECCCCccccChh--hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-Ccc
Confidence 666666664333 6667777777777777655322 456777777777777776532 46778888888886 445
Q ss_pred cccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc
Q 043317 295 SGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF 374 (700)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 374 (700)
.+.. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.. ...
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~ 240 (466)
T 1o6v_A 168 TDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLA 240 (466)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGG
T ss_pred cCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhh
Confidence 4333 388999999999999999864 348899999999999999997665 778999999999999998752 233
Q ss_pred CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhh
Q 043317 375 NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIE 454 (700)
Q Consensus 375 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~ 454 (700)
.+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++.+..| +.
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-------- 306 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS-------- 306 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG--------
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc--------
Confidence 78999999999999987655 8889999999999999996544 8899999999999999975332 21
Q ss_pred hccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCC
Q 043317 455 NVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVP 534 (700)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 534 (700)
.+++|+.|++++|++++..|
T Consensus 307 ------------------------------------------------------------~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 307 ------------------------------------------------------------NLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp ------------------------------------------------------------GCTTCSEEECCSSCCSCCGG
T ss_pred ------------------------------------------------------------CCCCCCEEECcCCcCCCchh
Confidence 24789999999999997766
Q ss_pred ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCccc
Q 043317 535 SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604 (700)
Q Consensus 535 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 604 (700)
++.+++|+.|++++|++++. ..++++++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 78999999999999999975 578999999999999999999887 89999999999999999974
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-36 Score=326.76 Aligned_cols=357 Identities=21% Similarity=0.195 Sum_probs=251.7
Q ss_pred ccCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCC
Q 043317 28 GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN 107 (700)
Q Consensus 28 g~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 107 (700)
+..+..++++++|++|++++|.+++. | .+..+++|++|++++|++++ ++ ++.+++|++|++++|.+.. + .
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~-~---~ 101 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTN-L---D 101 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-C---C
T ss_pred cccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCce-e---e
Confidence 33455677788888888888888865 4 67888888888888888875 33 6778888888888877544 2 2
Q ss_pred CCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCcc
Q 043317 108 FLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLH 187 (700)
Q Consensus 108 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 187 (700)
+..+++|++|++++|+++.+| +..+++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 677788888888888887775 6778888888888888874 44 347788888888888655444 467778888
Q ss_pred EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCC
Q 043317 188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267 (700)
Q Consensus 188 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 267 (700)
.|++++|++++ +| + ..+++|++|++++|++++. .++.+++|+.|++++|++++ +| +..+++|++|++++
T Consensus 174 ~L~ls~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV 242 (457)
T ss_dssp EEECCSSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred EEECCCCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence 88888888774 55 3 3367888888888888754 37778888888888888876 44 35678888888888
Q ss_pred cccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch
Q 043317 268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP 347 (700)
Q Consensus 268 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 347 (700)
|++++..+ ..+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|
T Consensus 243 N~l~~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSCCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCCcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 88877543 34555555555443 23344444444444443 2344455555555554443333
Q ss_pred hh--------ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCCh
Q 043317 348 VQ--------LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD 419 (700)
Q Consensus 348 ~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~ 419 (700)
.. +.++++|+.|++++|++++. ....+++|+.|++++|++++ ++.|..|++++|.+.|.
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--- 370 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--- 370 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---
T ss_pred cCCCcceEechhhcccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---
Confidence 21 33446788888888888885 23378888888888888875 24566777888888765
Q ss_pred hhhccCCCCEEecCCCccCCCCCchhhh
Q 043317 420 QICQLRRLGMMDLSHNRFNGSIPSCFTN 447 (700)
Q Consensus 420 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 447 (700)
..+..|+.+++++|+++|.+|..+..
T Consensus 371 --~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 371 --GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp --EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred --ceeeecCccccccCcEEEEcChhHhc
Confidence 35677888999999999999976544
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=330.08 Aligned_cols=278 Identities=17% Similarity=0.122 Sum_probs=158.0
Q ss_pred CEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccC
Q 043317 163 EVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSK 242 (700)
Q Consensus 163 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 242 (700)
+.++.+++.++ .+|..+ .+.++.|++++|.+.+..+..+. .+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555544 223322 23556666666665533333333 255666666666666655566666666666666666
Q ss_pred ccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCc
Q 043317 243 NNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHI 322 (700)
Q Consensus 243 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 322 (700)
|++++ ++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 90 n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 66643 33333345566666666666666655555666666666666666666555555666666666666666666555
Q ss_pred chhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCC
Q 043317 323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSS 401 (700)
Q Consensus 323 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~ 401 (700)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+... ...+|++|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 5556666666666666666665555556666666666666655444333332 444666666666666544434555666
Q ss_pred CccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchh
Q 043317 402 KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCF 445 (700)
Q Consensus 402 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 445 (700)
+|++|++++|++++..+..+..+++|+.|++++|++++..|..|
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 66666666666665555556666666666666666654444333
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.8e-35 Score=307.30 Aligned_cols=332 Identities=18% Similarity=0.152 Sum_probs=192.1
Q ss_pred CCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEE
Q 043317 184 DFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFL 263 (700)
Q Consensus 184 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 263 (700)
.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.. +..+++|++|
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-hcCCCCCCEE
Confidence 34455555555543 455555555666666666666666555556666666666666666665433332 2445555555
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCc
Q 043317 264 DLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE 343 (700)
Q Consensus 264 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 343 (700)
++++|.+....+..+..+++|++|++++|++++..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l- 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL- 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC-
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc-
Confidence 5555555544433344555555555555555544444455555555555555554432 123344444445444444
Q ss_pred ccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhc
Q 043317 344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ 423 (700)
Q Consensus 344 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~ 423 (700)
++.. ..++|++|++++|++... |.. ..++|++|++++|++++. ..+..
T Consensus 199 -----------------------~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 199 -----------------------STLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp -----------------------SEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred -----------------------cccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcC
Confidence 3321 123455555555555422 221 134566666666666532 35556
Q ss_pred cCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEe
Q 043317 424 LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFV 503 (700)
Q Consensus 424 l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 503 (700)
+++|++|++++|++++..|..+..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------------------- 270 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVK-------------------------------------------------------- 270 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred CCCccEEECCCCcCCCcChhHccc--------------------------------------------------------
Confidence 666666666666665444443332
Q ss_pred eccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcc
Q 043317 504 TKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA 583 (700)
Q Consensus 504 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 583 (700)
+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|+.|++++|+++.. |
T Consensus 271 ------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~- 334 (390)
T 3o6n_A 271 ------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K- 334 (390)
T ss_dssp ------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred ------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-
Confidence 2456666666666663 3455567788888888888888 5667788888899999999988855 3
Q ss_pred cccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcC
Q 043317 584 QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627 (700)
Q Consensus 584 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg 627 (700)
+..++.|++|++++|++++... ...+..+....+.+++..|.
T Consensus 335 -~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCC
T ss_pred -chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceec
Confidence 6778889999999999886432 23444555555666666665
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-35 Score=302.54 Aligned_cols=258 Identities=33% Similarity=0.558 Sum_probs=225.7
Q ss_pred CCCcEEEcccCcCCC--CcchhhcCCCCCcEEEccc-CcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcE
Q 043317 306 TKLYQLDISHNFLSG--HIPHWMGNFSNLEILLMSN-NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKH 381 (700)
Q Consensus 306 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~ 381 (700)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..+..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788888888877 6777888888888888884 77877788888888888888888888887777666 7888889
Q ss_pred EEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC-CCCEEecCCCccCCCCCchhhhhhhhhhhhccccC
Q 043317 382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR-RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFG 460 (700)
Q Consensus 382 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~ 460 (700)
|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------------ 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------ 197 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC------------
Confidence 99999998888888999999999999999999988999999988 99999999999988887766542
Q ss_pred CCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCc
Q 043317 461 GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL 540 (700)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 540 (700)
+ |+.|++++|.+++.+|..++.+
T Consensus 198 --------------------------------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 198 --------------------------------------------------------N-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp --------------------------------------------------------C-CSEEECCSSEEEECCGGGCCTT
T ss_pred --------------------------------------------------------c-ccEEECcCCcccCcCCHHHhcC
Confidence 3 7889999999999999999999
Q ss_pred CCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccC
Q 043317 541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYR 620 (700)
Q Consensus 541 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~ 620 (700)
++|++|++++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 9999999999999977766 889999999999999999999999999999999999999999999998888888889999
Q ss_pred CCcCCcCcCCCCCC
Q 043317 621 GNLYLCGPTINKSC 634 (700)
Q Consensus 621 gn~~lcg~~~~~~c 634 (700)
+|+++||.|+. .|
T Consensus 300 ~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 300 NNKCLCGSPLP-AC 312 (313)
T ss_dssp SSSEEESTTSS-CC
T ss_pred CCCCccCCCCC-CC
Confidence 99999998775 46
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-35 Score=326.22 Aligned_cols=335 Identities=19% Similarity=0.137 Sum_probs=202.5
Q ss_pred CCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcE
Q 043317 183 HDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWF 262 (700)
Q Consensus 183 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 262 (700)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+.. +.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-HcCCCCCCE
Confidence 345566666666554 455555554566666666666666555555666666666666666655433322 234555555
Q ss_pred EEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcC
Q 043317 263 LDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342 (700)
Q Consensus 263 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 342 (700)
|++++|.+.+..+..+..+++|++| ++++|.+++..|..|..+++|++|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L------------------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTL------------------------SMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEE------------------------ECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEE------------------------EeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 5555555544444344444444444 4444444444444444445555555555544
Q ss_pred cccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh
Q 043317 343 EGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC 422 (700)
Q Consensus 343 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~ 422 (700)
++.. +..+++|+.|++++|.+++.. ..++|+.|++++|.++.. +..+ .++|+.|++++|.+++ +..+.
T Consensus 184 ~~~~---~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 184 THVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp SBCC---GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGG
T ss_pred CCcC---hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--Chhhc
Confidence 4321 233445555555555444322 133556666666655432 2211 2466666666666664 34566
Q ss_pred ccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEE
Q 043317 423 QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF 502 (700)
Q Consensus 423 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 502 (700)
.+++|+.|++++|.+.+..|..|..
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------------- 276 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVK------------------------------------------------------- 276 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTT-------------------------------------------------------
T ss_pred cCCCCCEEECCCCccCCCCHHHhcC-------------------------------------------------------
Confidence 6667777777777666555544433
Q ss_pred eeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 503 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++..
T Consensus 277 -------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~- 340 (597)
T 3oja_B 277 -------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK- 340 (597)
T ss_dssp -------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred -------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC-
Confidence 2556667777777764 4555677888999999999998 57777888999999999999998653
Q ss_pred ccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcCcC
Q 043317 583 AQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPT 629 (700)
Q Consensus 583 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~ 629 (700)
+..++.|++|++++|++++..+ ..++..+....+.++...|+.+
T Consensus 341 --~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp --CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred --hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 6678899999999999987543 3456667777788888888853
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-33 Score=291.27 Aligned_cols=304 Identities=21% Similarity=0.311 Sum_probs=240.1
Q ss_pred ccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEE
Q 043317 208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFL 287 (700)
Q Consensus 208 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 287 (700)
+++|++|++++|.+.. ++ .+..+++|++|++++|++++. +. +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 5678888888887763 33 377788888888888887653 33 46688888888888887664 357788888888
Q ss_pred EcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCc
Q 043317 288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLS 367 (700)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 367 (700)
++++|.+++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 888888875433 7788888888888886554444 37888889999999888875444 778888999999999888
Q ss_pred ccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhh
Q 043317 368 GSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTN 447 (700)
Q Consensus 368 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 447 (700)
+..+ ...+++|+.+++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++. + .+
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~-- 261 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AV-- 261 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GG--
T ss_pred cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hH--
Confidence 7655 3378899999999999886544 7788999999999999985443 88899999999999988742 1 11
Q ss_pred hhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCC
Q 043317 448 MLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCN 527 (700)
Q Consensus 448 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 527 (700)
..+++|+.|++++|
T Consensus 262 ------------------------------------------------------------------~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 262 ------------------------------------------------------------------KDLTKLKMLNVGSN 275 (347)
T ss_dssp ------------------------------------------------------------------TTCTTCCEEECCSS
T ss_pred ------------------------------------------------------------------hcCCCcCEEEccCC
Confidence 12478889999999
Q ss_pred cCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317 528 ELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 528 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 602 (700)
.+++. ..+..+++|++|++++|++++..|..++++++|+.|++++|++++..| +..++.|++|++++|+++
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99864 458899999999999999998889999999999999999999998777 888999999999999986
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-32 Score=285.08 Aligned_cols=305 Identities=22% Similarity=0.288 Sum_probs=222.7
Q ss_pred CCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317 110 PTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 189 (700)
.+++|++|+++++.+..+|. +..+++|++|++++|+++ .++. +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 34456666666666655543 555666666666666665 3444 34666666666666666542 235566666666
Q ss_pred eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269 (700)
Q Consensus 190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 269 (700)
++++|.+. .++. + ..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 116 ~l~~n~i~-~~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNIS-DISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCC-CCGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSC
T ss_pred ECcCCccc-Cchh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCc
Confidence 66666665 3333 2 336777788887775553333 47778888888888887765433 4567888888888888
Q ss_pred cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317 270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349 (700)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 349 (700)
+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 766543 6678888888888888886544 7788899999999999886544 88889999999999998853 45
Q ss_pred ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 429 (700)
+..+++|++|++++|.+++. +....+++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++|+.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred HhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 88889999999999998876 333378999999999999998888999999999999999999997655 888999999
Q ss_pred EecCCCccC
Q 043317 430 MDLSHNRFN 438 (700)
Q Consensus 430 L~Ls~N~l~ 438 (700)
|++++|+++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999885
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-33 Score=292.89 Aligned_cols=310 Identities=21% Similarity=0.204 Sum_probs=270.2
Q ss_pred CCCcccEEEeeCCCCCCcChh-hcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccE
Q 043317 110 PTFQLKVLELANCSLNVVPTF-LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188 (700)
Q Consensus 110 ~~~~L~~L~L~~n~l~~~p~~-l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 188 (700)
.+.++++|++++|.++.+|.. +..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 456899999999999888876 467899999999999998 555544568999999999999999888888999999999
Q ss_pred EeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCc
Q 043317 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDN 268 (700)
Q Consensus 189 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n 268 (700)
|++++|.+. .+|..++..+++|++|++++|.+.+..+..+.++++|++|++++|++++. + ...+++|+.|++++|
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSS
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeecccc
Confidence 999999988 77877766689999999999999988888899999999999999999764 3 245899999999999
Q ss_pred ccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchh
Q 043317 269 NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPV 348 (700)
Q Consensus 269 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 348 (700)
.+.+. ...++|++|++++|.++.. |.. ..++|+.|++++|.+++. .++..+++|++|++++|.+.+..|.
T Consensus 197 ~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 88654 2346899999999999865 332 347999999999999864 5789999999999999999988899
Q ss_pred hccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCC
Q 043317 349 QLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLG 428 (700)
Q Consensus 349 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 428 (700)
.+..+++|+.|++++|.+++.......+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 999999999999999999987665557899999999999998 5777788899999999999999854 3 67889999
Q ss_pred EEecCCCccCC
Q 043317 429 MMDLSHNRFNG 439 (700)
Q Consensus 429 ~L~Ls~N~l~~ 439 (700)
.|++++|++.+
T Consensus 343 ~L~l~~N~~~~ 353 (390)
T 3o6n_A 343 NLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCEEH
T ss_pred EEEcCCCCccc
Confidence 99999999974
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.4e-34 Score=290.67 Aligned_cols=252 Identities=29% Similarity=0.416 Sum_probs=221.3
Q ss_pred CCCcEEEcccCcccc--cccccccCCCCCcEEEccc-CcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCE
Q 043317 282 TQMEFLYLENNKFSG--KIEEGLLNSTKLYQLDISH-NFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL 358 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 358 (700)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467888888888887 7888888888899999984 8888888888888899999999999988888888888999999
Q ss_pred EEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCC-CccEEECcCCcccccCChhhhccCCCCEEecCCCc
Q 043317 359 LSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSS-KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436 (700)
Q Consensus 359 L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 436 (700)
|++++|.+++..+..+ .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999888777777 789999999999999888899998887 999999999999989999999887 9999999999
Q ss_pred cCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccc
Q 043317 437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL 516 (700)
Q Consensus 437 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 516 (700)
+++..|..+.. +
T Consensus 209 l~~~~~~~~~~--------------------------------------------------------------------l 220 (313)
T 1ogq_A 209 LEGDASVLFGS--------------------------------------------------------------------D 220 (313)
T ss_dssp EEECCGGGCCT--------------------------------------------------------------------T
T ss_pred ccCcCCHHHhc--------------------------------------------------------------------C
Confidence 98776655543 3
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 596 (700)
++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|+++++|+.|+|++|++++.+|.. ..+++|+.+++
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 6788899999999977666 888999999999999999999999999999999999999999999986 88999999999
Q ss_pred cCCc-Cccc
Q 043317 597 SYNN-LSGL 604 (700)
Q Consensus 597 s~N~-l~~~ 604 (700)
++|+ +.|.
T Consensus 299 ~~N~~lc~~ 307 (313)
T 1ogq_A 299 ANNKCLCGS 307 (313)
T ss_dssp CSSSEEEST
T ss_pred cCCCCccCC
Confidence 9998 6653
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=307.84 Aligned_cols=314 Identities=20% Similarity=0.183 Sum_probs=244.1
Q ss_pred cCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcE
Q 043317 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELII 237 (700)
Q Consensus 158 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 237 (700)
.+.+++.+++++|.+....+..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 5688999999999998766666788999999999999998655555544 899999999999999988888999999999
Q ss_pred EEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCc
Q 043317 238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNF 317 (700)
Q Consensus 238 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 317 (700)
|++++|.+++ +|...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+++|+.|++++|.
T Consensus 128 L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999985 55555578999999999999999888888888888888888888877542 3445666677776666
Q ss_pred CCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhh
Q 043317 318 LSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDML 397 (700)
Q Consensus 318 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 397 (700)
+++ +...++|+.|++++| .++...... .++|+.|++++|.+++ +.++
T Consensus 204 l~~-----l~~~~~L~~L~ls~n------------------------~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHN------------------------SINVVRGPV--NVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp CSE-----EECCTTCSEEECCSS------------------------CCCEEECSC--CSCCCEEECCSSCCCC--CGGG
T ss_pred ccc-----ccCCchhheeeccCC------------------------ccccccccc--CCCCCEEECCCCCCCC--Chhh
Confidence 552 122234455555554 444333322 2567788888888775 3567
Q ss_pred hCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccc
Q 043317 398 FRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTY 477 (700)
Q Consensus 398 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (700)
..+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~-------------------------------- 297 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG-------------------------------- 297 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSS--------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccc--------------------------------
Confidence 788888888888888888888888888889999998888864 22111
Q ss_pred cccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcccc
Q 043317 478 YNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSI 557 (700)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 557 (700)
..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++.
T Consensus 298 ------------------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~- 339 (597)
T 3oja_B 298 ------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL- 339 (597)
T ss_dssp ------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred ------------------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-
Confidence 12467888999999998 6777888899999999999999854
Q ss_pred CcccccccCCCEEeCCCCcCcccCc
Q 043317 558 PRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 558 p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
| ++.+++|+.|++++|++++..+
T Consensus 340 ~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred C--hhhcCCCCEEEeeCCCCCChhH
Confidence 3 6778899999999999986543
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=7e-35 Score=316.09 Aligned_cols=358 Identities=18% Similarity=0.156 Sum_probs=280.6
Q ss_pred CCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc----cCCccccCCCCCcEEEccCccCCCCCchHHHhcCC-
Q 043317 184 DFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG----NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCI- 258 (700)
Q Consensus 184 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~- 258 (700)
+.|++|++++|++.......++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4577888888887654445555668899999999999874 34667788899999999999987655656666666
Q ss_pred ---cCcEEEcCCccccc----ccccccCCCCCCcEEEcccCccccccccccc-----CCCCCcEEEcccCcCCCCc----
Q 043317 259 ---SLWFLDLSDNNFYG----QFFSKDLNLTQMEFLYLENNKFSGKIEEGLL-----NSTKLYQLDISHNFLSGHI---- 322 (700)
Q Consensus 259 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~~---- 322 (700)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999985 4577888999999999999998865444333 2568999999999998643
Q ss_pred chhhcCCCCCcEEEcccCcCcccchhhcc-----CCCCCCEEEccCccCcccC----CCcc-CCCCCcEEEccCCcCccC
Q 043317 323 PHWMGNFSNLEILLMSNNCLEGNIPVQLL-----NHRTLKLLSVSENYLSGSM----TSSF-NLSSLKHLYVQKNALSGP 392 (700)
Q Consensus 323 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~----~~~~-~l~~L~~L~l~~n~l~~~ 392 (700)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..+ .+++|++|++++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 56677789999999999998865555443 3669999999999998742 3333 689999999999998754
Q ss_pred c-----chhhhCCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317 393 I-----PDMLFRSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL 463 (700)
Q Consensus 393 ~-----~~~~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 463 (700)
. +..+..+++|++|++++|+++.. ++..+..+++|++|++++|++.+..+..+.....
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~------------- 309 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL------------- 309 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc-------------
Confidence 3 22333588999999999999864 5777888999999999999886433333332100
Q ss_pred cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCccc----CCccccC
Q 043317 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGN----VPSEIGD 539 (700)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~ 539 (700)
...+.|+.|++++|.+++. ++..+..
T Consensus 310 --------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 310 --------------------------------------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp --------------------------------------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred --------------------------------------------------cCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 1125789999999999865 4666778
Q ss_pred cCCCcEEeCCCccCccccCccccc-----ccCCCEEeCCCCcCcc----cCcccccCCCCCCeEeccCCcCccc
Q 043317 540 LQKIRGLNLSHNCLSGSIPRSFSN-----LQMIESLDLSNNRLSG----QIPAQLIELNFLSNFNVSYNNLSGL 604 (700)
Q Consensus 540 l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~ 604 (700)
+++|++|++++|++++..+..+.. .++|+.|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 899999999999998766665553 6799999999999996 7888899999999999999999753
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.8e-35 Score=317.37 Aligned_cols=386 Identities=19% Similarity=0.161 Sum_probs=196.8
Q ss_pred cccEEEeeCCCCCCcC--hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEe
Q 043317 113 QLKVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD 190 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 190 (700)
+|++|++++|+++..+ ..+..+++|++|++++|++++.... .++..+..+++|++|+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~---------------------~l~~~l~~~~~L~~L~ 62 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK---------------------DISSALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH---------------------HHHHHHHTCTTCCEEE
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH---------------------HHHHHHHhCCCcCEEe
Confidence 4666666666664332 2244555666666666665421110 1122223334444555
Q ss_pred CCCCcCccccChhHHhhcc----CCcEEEccCCcCCc----cCCccccCCCCCcEEEccCccCCCCCchHHHhc----CC
Q 043317 191 ASSNNFIGTLPQDMGTILK----KLLVLDISNNHFEG----NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG----CI 258 (700)
Q Consensus 191 l~~n~l~~~~~~~~~~~l~----~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~ 258 (700)
+++|.+.+..+..++..++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .+
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 5555544344445555455 58888888888773 447777888888888888888765444333221 34
Q ss_pred cCcEEEcCCccccccc----ccccCCCCCCcEEEcccCccccccccccc-----CCCCCcEEEcccCcCCCC----cchh
Q 043317 259 SLWFLDLSDNNFYGQF----FSKDLNLTQMEFLYLENNKFSGKIEEGLL-----NSTKLYQLDISHNFLSGH----IPHW 325 (700)
Q Consensus 259 ~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~----~~~~ 325 (700)
+|++|++++|.+++.. +..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 5777777766665532 33334455666666666665543333222 134556666666655543 3444
Q ss_pred hcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccC----cchhhhCC
Q 043317 326 MGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGP----IPDMLFRS 400 (700)
Q Consensus 326 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~ 400 (700)
+..+++|++|++++|.+.+.....+. +..+ .+++|++|++++|++++. ++..+..+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred HHhCCCccEEeccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 44555555555555555432111110 1111 244555555555555432 34444455
Q ss_pred CCccEEECcCCcccccCChhhhcc-----CCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccc
Q 043317 401 SKLMTLDLRGNNLEGQIPDQICQL-----RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIG 475 (700)
Q Consensus 401 ~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 475 (700)
++|++|++++|.+++..+..+... ++|+.|++++|.+++.....+....
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-------------------------- 337 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-------------------------- 337 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--------------------------
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH--------------------------
Confidence 555666665555544333333322 4566666666655432111111100
Q ss_pred cccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccC-----cCCCcEEeCCC
Q 043317 476 TYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD-----LQKIRGLNLSH 550 (700)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~ 550 (700)
..++.|+.||+++|.+++..+..+.. .++|++|++++
T Consensus 338 --------------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 338 --------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp --------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred --------------------------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 11245555666666655443333332 45666666666
Q ss_pred ccCcc----ccCcccccccCCCEEeCCCCcCcccCccccc-----CCCCCCeEeccCCcCc
Q 043317 551 NCLSG----SIPRSFSNLQMIESLDLSNNRLSGQIPAQLI-----ELNFLSNFNVSYNNLS 602 (700)
Q Consensus 551 N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~ 602 (700)
|++++ .+|..+..+++|++||+++|++++.....+. ....|+.|++.++.+.
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 66664 5566666666666666666666643221111 1234555555555444
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.4e-31 Score=273.37 Aligned_cols=267 Identities=21% Similarity=0.225 Sum_probs=140.3
Q ss_pred cCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcc
Q 043317 259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338 (700)
Q Consensus 259 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 338 (700)
++++|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 3344444444444333334444444444444444444444444444444444444444444 2222221 345555555
Q ss_pred cCcCcccchhhccCCCCCCEEEccCccCcc--cCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc
Q 043317 339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSG--SMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG 415 (700)
Q Consensus 339 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 415 (700)
+|.+++..+..+.++++|+.|++++|.++. ..+..+ .+++|++|++++|+++. +|..+. ++|++|++++|++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 555544444444445555555555554432 233333 45555555555555542 333322 556666666666665
Q ss_pred cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317 416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495 (700)
Q Consensus 416 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (700)
..|..+..+++|+.|++++|++++..+..+..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------ 238 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------------------------ 238 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------------------------
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------------------------
Confidence 55556666666666666666665433333322
Q ss_pred ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCccccc------ccCCCE
Q 043317 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSN------LQMIES 569 (700)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~ 569 (700)
+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. ...|+.
T Consensus 239 --------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~ 297 (330)
T 1xku_A 239 --------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297 (330)
T ss_dssp --------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred --------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccc
Confidence 245566666666666 55666666677777777777776655555543 356777
Q ss_pred EeCCCCcCcc--cCcccccCCCCCCeEeccCCc
Q 043317 570 LDLSNNRLSG--QIPAQLIELNFLSNFNVSYNN 600 (700)
Q Consensus 570 L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 600 (700)
|++++|++.. ..|..|..+..++.+++++|+
T Consensus 298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eEeecCcccccccCccccccccceeEEEecccC
Confidence 7777777753 556677777777777777774
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.6e-31 Score=275.94 Aligned_cols=287 Identities=22% Similarity=0.242 Sum_probs=199.6
Q ss_pred CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEc
Q 043317 234 ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDI 313 (700)
Q Consensus 234 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 313 (700)
+++.++++++.++ .+|..+ .+++++|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555666655554 233322 346666666666666665666666777777777777777666666777777777777
Q ss_pred ccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc--cCCCcc-CCCCCcEEEccCCcCc
Q 043317 314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG--SMTSSF-NLSSLKHLYVQKNALS 390 (700)
Q Consensus 314 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~l~~n~l~ 390 (700)
++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++. ..+..+ .+ +|++|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777776 3343333 567777777777776555567777777777777777753 444555 34 7777888888777
Q ss_pred cCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCc
Q 043317 391 GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG 470 (700)
Q Consensus 391 ~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 470 (700)
+ +|..+. ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------- 239 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF----------------------- 239 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----------------------
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-----------------------
Confidence 4 454443 67888888888888777777888888888888888887655544433
Q ss_pred ccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC
Q 043317 471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH 550 (700)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 550 (700)
+++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus 240 ---------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 240 ---------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred ---------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence 366778888888888 6777788888888888888
Q ss_pred ccCccccCcccccc------cCCCEEeCCCCcCc--ccCcccccCCCCCCeEeccCCc
Q 043317 551 NCLSGSIPRSFSNL------QMIESLDLSNNRLS--GQIPAQLIELNFLSNFNVSYNN 600 (700)
Q Consensus 551 N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 600 (700)
|++++..+..|... ..|+.|++++|++. +..|.+|..++.|+.+++++|+
T Consensus 274 N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88887777766653 56888999999887 6777888888889989888874
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.7e-31 Score=275.69 Aligned_cols=287 Identities=22% Similarity=0.276 Sum_probs=157.5
Q ss_pred CcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317 211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290 (700)
Q Consensus 211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 290 (700)
++.++++++.++ .+|..+. ++++.|++++|.+++..+.. +..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 444444444444 2333221 34444444444444322222 2334455555555555544444455555555555555
Q ss_pred cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCc--ccchhhccCCCCCCEEEccCccCcc
Q 043317 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE--GNIPVQLLNHRTLKLLSVSENYLSG 368 (700)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~ 368 (700)
+|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++ +..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 55555 2233222 45666666666665554555566666666666666653 2444455555 66666666666665
Q ss_pred cCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhh
Q 043317 369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448 (700)
Q Consensus 369 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 448 (700)
.+.... ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~- 262 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD- 262 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG-
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc-
Confidence 443322 56666666666666555566666666666666666666555556666666666666666665 44443322
Q ss_pred hhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCc
Q 043317 449 LQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNE 528 (700)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 528 (700)
+++|+.|++++|.
T Consensus 263 -------------------------------------------------------------------l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 263 -------------------------------------------------------------------LKLLQVVYLHTNN 275 (332)
T ss_dssp -------------------------------------------------------------------CTTCCEEECCSSC
T ss_pred -------------------------------------------------------------------CccCCEEECCCCC
Confidence 2456666666666
Q ss_pred CcccCCccccC------cCCCcEEeCCCccCc--cccCcccccccCCCEEeCCCCc
Q 043317 529 LTGNVPSEIGD------LQKIRGLNLSHNCLS--GSIPRSFSNLQMIESLDLSNNR 576 (700)
Q Consensus 529 l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~ 576 (700)
+++..+..|.. ...|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66555555543 245677777777776 5666777777777777777764
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=8e-31 Score=270.56 Aligned_cols=289 Identities=17% Similarity=0.223 Sum_probs=171.8
Q ss_pred CccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEE
Q 043317 185 FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLD 264 (700)
Q Consensus 185 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 264 (700)
+++.++++++.+. .+|..+. +.+++|++++|++++..+..|.++++|++|++++|.++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 89 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------------ 89 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------------
Confidence 4555555555544 3444331 34555555555555444444555555555555555554
Q ss_pred cCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcc
Q 043317 265 LSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG 344 (700)
Q Consensus 265 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 344 (700)
+..+..+..+++|++|++++|+++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 90 -------~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 90 -------KISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp -------CBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred -------eeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 4444445555555555555555552 233222 456666666666665555556666666666666666642
Q ss_pred --cchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh
Q 043317 345 --NIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC 422 (700)
Q Consensus 345 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~ 422 (700)
..+..+..+++|++|++++|.++..+.... ++|++|++++|++++..|..+..+++|++|++++|++++..+..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 445556666666666666666665443332 5677777777777666666677777777777777777766666677
Q ss_pred ccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEE
Q 043317 423 QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF 502 (700)
Q Consensus 423 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 502 (700)
.+++|++|++++|+++ .+|..+..
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~------------------------------------------------------- 261 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLAD------------------------------------------------------- 261 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTT-------------------------------------------------------
T ss_pred CCCCCCEEECCCCcCc-cCChhhcc-------------------------------------------------------
Confidence 7777777777777766 44443322
Q ss_pred eeccccccccCccccccceEECCCCcCcccCCccccC------cCCCcEEeCCCccCcc--ccCcccccccCCCEEeCCC
Q 043317 503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD------LQKIRGLNLSHNCLSG--SIPRSFSNLQMIESLDLSN 574 (700)
Q Consensus 503 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~ 574 (700)
+++|+.|++++|++++..+..|.. ...++.|++++|.+.. ..|..|..+..++.++|++
T Consensus 262 -------------l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 262 -------------HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp -------------CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred -------------CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 255666777777777665555543 3667778888887753 5567778888888888887
Q ss_pred Cc
Q 043317 575 NR 576 (700)
Q Consensus 575 N~ 576 (700)
|+
T Consensus 329 N~ 330 (330)
T 1xku_A 329 YK 330 (330)
T ss_dssp --
T ss_pred cC
Confidence 74
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=264.79 Aligned_cols=283 Identities=17% Similarity=0.135 Sum_probs=163.2
Q ss_pred CCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 043317 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQL 311 (700)
Q Consensus 232 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 311 (700)
++.....+.+++.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccc-ccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3444556777777753 44433 3466777777777666555566666666666666666666556666666666666
Q ss_pred EcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch-hhccCCCCCCEEEccCc-cCcccCCCcc-CCCCCcEEEccCCc
Q 043317 312 DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP-VQLLNHRTLKLLSVSEN-YLSGSMTSSF-NLSSLKHLYVQKNA 388 (700)
Q Consensus 312 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~l~~L~~L~l~~n~ 388 (700)
++++|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+++..+..+ .+++|++|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 666666665544456666666666666666653222 24555666666666665 3444444444 45555555555555
Q ss_pred CccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCC
Q 043317 389 LSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP 468 (700)
Q Consensus 389 l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 468 (700)
+++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------- 244 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------- 244 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------------
Confidence 55555555555555555555555554322223334555555555555554332221111
Q ss_pred CcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeC
Q 043317 469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNL 548 (700)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 548 (700)
......++.+++
T Consensus 245 --------------------------------------------------------------------~~~~~~l~~l~L 256 (353)
T 2z80_A 245 --------------------------------------------------------------------GETNSLIKKFTF 256 (353)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEE
T ss_pred --------------------------------------------------------------------ccccchhhcccc
Confidence 112334455555
Q ss_pred CCccCcc----ccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317 549 SHNCLSG----SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 549 s~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 607 (700)
+++.+++ .+|..++++++|+.||+++|+++...+..|..+++|++|++++|++++.+|.
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 5555543 3566677777777777777777744333357777888888888887776654
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=264.34 Aligned_cols=283 Identities=17% Similarity=0.162 Sum_probs=227.1
Q ss_pred ccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEE
Q 043317 208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFL 287 (700)
Q Consensus 208 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 287 (700)
++.....+.+++.++ .+|..+. ++|++|++++|++++..+.. +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 556677899999998 5676554 58999999999998754433 4779999999999999999888899999999999
Q ss_pred EcccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccC-cCcccchhhccCCCCCCEEEccCcc
Q 043317 288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNN-CLEGNIPVQLLNHRTLKLLSVSENY 365 (700)
Q Consensus 288 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~ 365 (700)
++++|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999997766668999999999999999996544 47899999999999999 5776667889999999999999999
Q ss_pred CcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhc---cCCCCEEecCCCccCCCC
Q 043317 366 LSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ---LRRLGMMDLSHNRFNGSI 441 (700)
Q Consensus 366 l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~ 441 (700)
+++..+..+ .+++|++|++++|++....+..+..+++|++|++++|++++..+..+.. .+.++.++++++.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l---- 261 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI---- 261 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC----
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc----
Confidence 999988877 8999999999999997443344556899999999999998765544332 23344444444333
Q ss_pred CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317 442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG 521 (700)
Q Consensus 442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 521 (700)
T Consensus 262 -------------------------------------------------------------------------------- 261 (353)
T 2z80_A 262 -------------------------------------------------------------------------------- 261 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
+++.+. .+|..++.+++|++|++++|+++...+..|+++++|++|++++|++++..|
T Consensus 262 ---~~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 262 ---TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ---CHHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---cCcchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 222222 456678888899999999999985444446899999999999999987665
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5e-29 Score=254.23 Aligned_cols=250 Identities=21% Similarity=0.256 Sum_probs=183.3
Q ss_pred EEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc--chhhccCCCCCCEEEccC
Q 043317 286 FLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN--IPVQLLNHRTLKLLSVSE 363 (700)
Q Consensus 286 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~ 363 (700)
.++.+++.++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555555 2333322 4666677777766644444566667777777777766522 245555667777777777
Q ss_pred ccCcccCCCccCCCCCcEEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCC-CC
Q 043317 364 NYLSGSMTSSFNLSSLKHLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNG-SI 441 (700)
Q Consensus 364 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~ 441 (700)
|.+++.+.....+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ ..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 7766554443367777777777777765444 467777888888888888887777778888888888888888764 23
Q ss_pred CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317 442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG 521 (700)
Q Consensus 442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 521 (700)
|..+.. +++|+.
T Consensus 168 ~~~~~~--------------------------------------------------------------------l~~L~~ 179 (306)
T 2z66_A 168 PDIFTE--------------------------------------------------------------------LRNLTF 179 (306)
T ss_dssp CSCCTT--------------------------------------------------------------------CTTCCE
T ss_pred hhHHhh--------------------------------------------------------------------CcCCCE
Confidence 433322 367888
Q ss_pred EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCc
Q 043317 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN-FLSNFNVSYNN 600 (700)
Q Consensus 522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~ 600 (700)
|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999888888899999999999999999988787899999999999999999999999999885 89999999999
Q ss_pred CcccCC
Q 043317 601 LSGLIP 606 (700)
Q Consensus 601 l~~~~p 606 (700)
+++..+
T Consensus 260 ~~~~c~ 265 (306)
T 2z66_A 260 FACTCE 265 (306)
T ss_dssp EECSGG
T ss_pred eecccC
Confidence 986543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.4e-31 Score=294.41 Aligned_cols=299 Identities=14% Similarity=0.072 Sum_probs=150.4
Q ss_pred CCCCCCEEEccCCCCCccCchHHhhcCCC-CCEEEccCCcC-cc-cCCCCCCCCCCccEEeCCCCcCccccCh---hHHh
Q 043317 133 HQYDLKYLDLSLNNLVGDFPSWMLQNNTK-LEVLFLTNNSF-TG-NLRLPNTKHDFLHHLDASSNNFIGTLPQ---DMGT 206 (700)
Q Consensus 133 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l-~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~ 206 (700)
.+++|++|+|++|.+++..+.++...+++ |++|++++|.- .. .++.....+++|++|++++|.+.+.-.. .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56667777777776665444444322333 66666666541 10 0111112345555555555554433111 1223
Q ss_pred hccCCcEEEccCCcCC----ccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccc---cccccccC
Q 043317 207 ILKKLLVLDISNNHFE----GNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFY---GQFFSKDL 279 (700)
Q Consensus 207 ~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~ 279 (700)
.+++|++|++++|.++ +.++..+.++++|+.|++++|.+.+ ++ ..+..+++|++|+++..... ...+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 3566677777666665 2233344556666666666666654 33 23455666666666543221 12223445
Q ss_pred CCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccCcCcccchhhccCCCCCCE
Q 043317 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL 358 (700)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 358 (700)
.+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 5566666666654322 445555556666666666666543322 23455666666666633222223333345566666
Q ss_pred EEccC-----------ccCcccCCCc-c-CCCCCcEEEccCCcCccCcchhhhC-CCCccEEECc----CCccccc----
Q 043317 359 LSVSE-----------NYLSGSMTSS-F-NLSSLKHLYVQKNALSGPIPDMLFR-SSKLMTLDLR----GNNLEGQ---- 416 (700)
Q Consensus 359 L~l~~-----------n~l~~~~~~~-~-~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~N~l~~~---- 416 (700)
|++++ |.+++..... . .+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 66662 3333321111 1 3556666666555555544444443 5556666664 4444432
Q ss_pred -CChhhhccCCCCEEecCC
Q 043317 417 -IPDQICQLRRLGMMDLSH 434 (700)
Q Consensus 417 -~~~~~~~l~~L~~L~Ls~ 434 (700)
++..+..+++|+.|++++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHhCCCCCEEEEec
Confidence 222244555666666554
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.8e-31 Score=294.78 Aligned_cols=401 Identities=13% Similarity=0.080 Sum_probs=220.3
Q ss_pred chhccCCCCCCEEEeCcc--------CCcccc------------CCCCCCEEECCCCcCCcccchhccC-CC-CCCEEeC
Q 043317 12 LTGLANLTILQVLDLSGS--------SSNCLK------------YLSHLKVLDISHNQLSGSLSSTITS-LT-SLEYLDL 69 (700)
Q Consensus 12 p~~~~~l~~L~~L~Lsg~--------~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~L 69 (700)
+..+.++++|++|+|+|. +|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 345567888999999642 222222 6788888888888887766666655 33 4888888
Q ss_pred CCCc-CCCCCChhhccCCCCCcEEEcccCcccccc---ccCCCCCCCcccEEEeeCCCCC-----CcChhhcCCCCCCEE
Q 043317 70 SYNN-FEGPCPLSSLANHSKLEVLLLSSTNNMLLV---KTENFLPTFQLKVLELANCSLN-----VVPTFLLHQYDLKYL 140 (700)
Q Consensus 70 s~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L~L~~n~l~-----~~p~~l~~~~~L~~L 140 (700)
++|. ++..........+++|++|++++|...... -......+++|++|++++|.++ .++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 8876 221100122346788888888887643221 0012345678888888888875 234445677888888
Q ss_pred EccCCCCCccCchHHhhcCCCCCEEEccCCcCc---ccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEcc
Q 043317 141 DLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT---GNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS 217 (700)
Q Consensus 141 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 217 (700)
++++|.+. .+|.. +..+++|++|+++..... +.....+..+++|+.++++++.. +.+|..+. .+++|++|+++
T Consensus 226 ~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls 301 (592)
T 3ogk_B 226 KVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLL 301 (592)
T ss_dssp ECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEET
T ss_pred eccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh-hcCCCcEEecC
Confidence 88888877 46644 457888888888753322 23334556667777777776532 24444333 36677777777
Q ss_pred CCcCCccCC-ccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCC-----------cccccccccc-cCCCCCC
Q 043317 218 NNHFEGNIP-SSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD-----------NNFYGQFFSK-DLNLTQM 284 (700)
Q Consensus 218 ~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~-~~~l~~L 284 (700)
+|.+++... ..+..+++|+.|+++ +.+.+.....+...+++|++|++++ +.+++..... ...+++|
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 777553322 234667777777776 4443333333445566677776662 3443321111 2235556
Q ss_pred cEEEcccCcccccccccccC-CCCCcEEEcc----cCcCCCC-----cchhhcCCCCCcEEEcccCc--CcccchhhccC
Q 043317 285 EFLYLENNKFSGKIEEGLLN-STKLYQLDIS----HNFLSGH-----IPHWMGNFSNLEILLMSNNC--LEGNIPVQLLN 352 (700)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~-~~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~ 352 (700)
++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++.....+..
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 66666555555444444433 5555555554 3444432 22234445555555554322 33322222221
Q ss_pred CCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCcc-CcchhhhCCCCccEEECcCCccccc-CChhhhccCCCCEE
Q 043317 353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSG-PIPDMLFRSSKLMTLDLRGNNLEGQ-IPDQICQLRRLGMM 430 (700)
Q Consensus 353 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L 430 (700)
.+++|++|++++|++++ .++..+..+++|++|++++|++++. ++..+..+++|+.|
T Consensus 461 ----------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 461 ----------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp ----------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred ----------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence 24445555555554443 2233334445555555555554432 22223345555555
Q ss_pred ecCCCccCC
Q 043317 431 DLSHNRFNG 439 (700)
Q Consensus 431 ~Ls~N~l~~ 439 (700)
++++|++++
T Consensus 519 ~ls~n~it~ 527 (592)
T 3ogk_B 519 WVQGYRASM 527 (592)
T ss_dssp EEESCBCCT
T ss_pred ECcCCcCCH
Confidence 555555443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.7e-28 Score=259.40 Aligned_cols=248 Identities=21% Similarity=0.237 Sum_probs=205.6
Q ss_pred CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317 284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE 363 (700)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 363 (700)
...++..+..++ .+|..+. ++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666776766 4455443 6788888888888877777888888888888888888877777888888888888888
Q ss_pred ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC-cccccCChhhhccCCCCEEecCCCccCCCC
Q 043317 364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN-NLEGQIPDQICQLRRLGMMDLSHNRFNGSI 441 (700)
Q Consensus 364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 441 (700)
|.+++..+..+ .+++|++|++++|+++...+..|..+++|++|++++| .+....+..|.++++|++|++++|+++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 88888777766 7888999999999888766778888899999999884 455455557889999999999999887 33
Q ss_pred CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317 442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG 521 (700)
Q Consensus 442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 521 (700)
|. + ..+++|+.
T Consensus 201 ~~-~--------------------------------------------------------------------~~l~~L~~ 211 (440)
T 3zyj_A 201 PN-L--------------------------------------------------------------------TPLIKLDE 211 (440)
T ss_dssp CC-C--------------------------------------------------------------------TTCSSCCE
T ss_pred cc-c--------------------------------------------------------------------CCCcccCE
Confidence 31 1 12478899
Q ss_pred EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 601 (700)
Q Consensus 522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 601 (700)
|+|++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999999899999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred ccc
Q 043317 602 SGL 604 (700)
Q Consensus 602 ~~~ 604 (700)
.+.
T Consensus 292 ~Cd 294 (440)
T 3zyj_A 292 NCN 294 (440)
T ss_dssp ECS
T ss_pred cCC
Confidence 753
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1e-28 Score=251.92 Aligned_cols=273 Identities=20% Similarity=0.191 Sum_probs=191.0
Q ss_pred EEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC--cchhhcCCCCCcEEEccc
Q 043317 262 FLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH--IPHWMGNFSNLEILLMSN 339 (700)
Q Consensus 262 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~ 339 (700)
.++++++.++.... .+ .+++++|++++|+++...+..+..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 44555554443322 11 24566777777776654444566777777777777776632 255666677777777777
Q ss_pred CcCcccchhhccCCCCCCEEEccCccCcccCC-Ccc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc-c
Q 043317 340 NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMT-SSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG-Q 416 (700)
Q Consensus 340 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~-~ 416 (700)
|.+. .+|..+..+++|++|++++|.+++..+ ..+ .+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 7776 455567777788888888887777665 334 67888888888888877777778888888888888888876 5
Q ss_pred CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcc
Q 043317 417 IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQ 496 (700)
Q Consensus 417 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (700)
.|..+..+++|++|++++|++++..|..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------- 197 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------------------------------- 197 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTT-------------------------------------------------
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcC-------------------------------------------------
Confidence 6778888888888888888887655554433
Q ss_pred cceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCccccccc-CCCEEeCCCC
Q 043317 497 QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQ-MIESLDLSNN 575 (700)
Q Consensus 497 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N 575 (700)
+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|+.|+|++|
T Consensus 198 -------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 198 -------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp -------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred -------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 36678888888888877777788888999999999999888888888884 8999999999
Q ss_pred cCcccCcc--cccCCCCCCeEeccCCcCcccCC
Q 043317 576 RLSGQIPA--QLIELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 576 ~l~~~~p~--~l~~l~~L~~L~ls~N~l~~~~p 606 (700)
++++..+. ....+...+.+.+..+.+.+..|
T Consensus 259 ~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 259 DFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred CeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 88865331 11122233344455555555544
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.3e-28 Score=260.01 Aligned_cols=249 Identities=19% Similarity=0.242 Sum_probs=202.3
Q ss_pred CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317 284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE 363 (700)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 363 (700)
...++.++..++ .+|..+. +++++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 445666666666 3444433 5788888888888877777788888888888888888877777788888888888888
Q ss_pred ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcC-CcccccCChhhhccCCCCEEecCCCccCCCC
Q 043317 364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG-NNLEGQIPDQICQLRRLGMMDLSHNRFNGSI 441 (700)
Q Consensus 364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 441 (700)
|.+++.++..+ .+++|++|++++|+++...+..|..+++|++|++++ |.+....+..+..+++|++|++++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 88887777766 688888888888888866666788888999999988 455544555788899999999999988742
Q ss_pred CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317 442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG 521 (700)
Q Consensus 442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 521 (700)
|. + ..+++|+.
T Consensus 212 ~~-~--------------------------------------------------------------------~~l~~L~~ 222 (452)
T 3zyi_A 212 PN-L--------------------------------------------------------------------TPLVGLEE 222 (452)
T ss_dssp CC-C--------------------------------------------------------------------TTCTTCCE
T ss_pred cc-c--------------------------------------------------------------------cccccccE
Confidence 31 1 12477889
Q ss_pred EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 601 (700)
Q Consensus 522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 601 (700)
|+|++|.+++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99999999998899999999999999999999998899999999999999999999988888899999999999999998
Q ss_pred cccC
Q 043317 602 SGLI 605 (700)
Q Consensus 602 ~~~~ 605 (700)
.+..
T Consensus 303 ~CdC 306 (452)
T 3zyi_A 303 NCDC 306 (452)
T ss_dssp ECST
T ss_pred CCCC
Confidence 7543
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.4e-28 Score=247.62 Aligned_cols=235 Identities=18% Similarity=0.222 Sum_probs=180.9
Q ss_pred CCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEE
Q 043317 281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLS 360 (700)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 360 (700)
.++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888887 56666777888888888888877 67777777888888888888877 6677777777777777
Q ss_pred ccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCC
Q 043317 361 VSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS 440 (700)
Q Consensus 361 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 440 (700)
+++|.+.+..+..+. .. ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~-----~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 157 IRACPELTELPEPLA-----ST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEEETTCCCCCSCSE-----EE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCCccccChhHh-----hc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 777776666554431 10 11123455778888888888887 677778888888888888888874
Q ss_pred CCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccc
Q 043317 441 IPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV 520 (700)
Q Consensus 441 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~ 520 (700)
+|..+.. +++|+
T Consensus 221 l~~~l~~--------------------------------------------------------------------l~~L~ 232 (328)
T 4fcg_A 221 LGPAIHH--------------------------------------------------------------------LPKLE 232 (328)
T ss_dssp CCGGGGG--------------------------------------------------------------------CTTCC
T ss_pred Cchhhcc--------------------------------------------------------------------CCCCC
Confidence 4443333 36778
Q ss_pred eEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCc
Q 043317 521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNN 600 (700)
Q Consensus 521 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 600 (700)
.|++++|.+.+.+|..++.+++|++|++++|++.+.+|..++++++|+.|+|++|++.+.+|..+..++.|+.+++..|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 88888888888888888888999999999988888888888999999999999999988999999999999999888776
Q ss_pred Cc
Q 043317 601 LS 602 (700)
Q Consensus 601 l~ 602 (700)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 65
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.4e-27 Score=245.19 Aligned_cols=235 Identities=16% Similarity=0.205 Sum_probs=202.4
Q ss_pred CCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEE
Q 043317 257 CISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILL 336 (700)
Q Consensus 257 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 336 (700)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 579999999999998 56677888999999999999999 78899999999999999999999 7788999999999999
Q ss_pred cccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc
Q 043317 337 MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG 415 (700)
Q Consensus 337 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 415 (700)
+++|.+.+.+|..+... . ....+ ++++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~~------~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAST------D---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEEE------C----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhhc------c---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 99999888888766431 1 11223 5788888888888888 778888889999999999999984
Q ss_pred cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317 416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495 (700)
Q Consensus 416 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (700)
+|..+..+++|++|++++|++.+.+|..+.+
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------------------------------------------------ 251 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGG------------------------------------------------ 251 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------------------------------------------------
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcC------------------------------------------------
Confidence 6667888999999999999888877766544
Q ss_pred ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575 (700)
Q Consensus 496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 575 (700)
+++|+.|++++|.+.+.+|..++.+++|++|+|++|++.+.+|+.++++++|+.+++..|
T Consensus 252 --------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 252 --------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp --------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred --------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 367888999999999999999999999999999999999999999999999999999987
Q ss_pred cCcc
Q 043317 576 RLSG 579 (700)
Q Consensus 576 ~l~~ 579 (700)
.+..
T Consensus 312 ~~~~ 315 (328)
T 4fcg_A 312 LQAQ 315 (328)
T ss_dssp GSCC
T ss_pred HHHH
Confidence 7663
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-29 Score=257.86 Aligned_cols=266 Identities=20% Similarity=0.176 Sum_probs=194.2
Q ss_pred cEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccC
Q 043317 261 WFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340 (700)
Q Consensus 261 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 340 (700)
+..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 334444444444333444445566666666666666656666667777777777777665443 666777777777777
Q ss_pred cCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChh
Q 043317 341 CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQ 420 (700)
Q Consensus 341 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~ 420 (700)
.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 766322 2367777888877777765544 567888888888888777777888888999999999888777776
Q ss_pred hh-ccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccce
Q 043317 421 IC-QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVK 499 (700)
Q Consensus 421 ~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 499 (700)
+. .+++|++|++++|++++. |..
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~~------------------------------------------------------- 187 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KGQ------------------------------------------------------- 187 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-ECC-------------------------------------------------------
T ss_pred HhhccCcCCEEECCCCcCccc-ccc-------------------------------------------------------
Confidence 64 688899999999988632 100
Q ss_pred EEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc-
Q 043317 500 VEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS- 578 (700)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 578 (700)
..+++|+.|++++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 188 --------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 188 --------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp --------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred --------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 1146788899999999854 445888999999999999998 57778889999999999999998
Q ss_pred ccCcccccCCCCCCeEeccCC-cCcccCCC
Q 043317 579 GQIPAQLIELNFLSNFNVSYN-NLSGLIPD 607 (700)
Q Consensus 579 ~~~p~~l~~l~~L~~L~ls~N-~l~~~~p~ 607 (700)
+.+|..+..++.|+.+++++| .++|..|.
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCHHHHHhccccceEEECCCchhccCCchh
Confidence 788888899999999999854 66765553
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.1e-28 Score=243.39 Aligned_cols=207 Identities=22% Similarity=0.237 Sum_probs=106.4
Q ss_pred CCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCc-CccCcchhhhCCCCccEEEC
Q 043317 331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNA-LSGPIPDMLFRSSKLMTLDL 408 (700)
Q Consensus 331 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 408 (700)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|+ +....|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 44444444444443333334444444444444444444433333 44445555555554 44333444555555555555
Q ss_pred cCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccc
Q 043317 409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK 488 (700)
Q Consensus 409 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (700)
++|++++..|..+..+++|++|++++|++++..+..+..
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------- 151 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD----------------------------------------- 151 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------------------------------
Confidence 555555444455555555555555555554332222221
Q ss_pred ccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCC
Q 043317 489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIE 568 (700)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 568 (700)
+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..|+++++|+
T Consensus 152 ---------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 152 ---------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp ---------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ---------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 24455555555555544444555566666666666666655566666666666
Q ss_pred EEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccC
Q 043317 569 SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI 605 (700)
Q Consensus 569 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 605 (700)
.|++++|++++..+..+..+++|++|++++|++.+..
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 6666666666555555666666666666666665433
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.5e-28 Score=243.19 Aligned_cols=251 Identities=21% Similarity=0.222 Sum_probs=216.6
Q ss_pred cEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCc
Q 043317 285 EFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN 364 (700)
Q Consensus 285 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 364 (700)
+.++.+++.++. +|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678899998884 45443 479999999999999877788999999999999999999888999999999999999999
Q ss_pred c-CcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317 365 Y-LSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442 (700)
Q Consensus 365 ~-l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 442 (700)
. ++...+..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 888777777 89999999999999998888899999999999999999998777789999999999999999985444
Q ss_pred chhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceE
Q 043317 443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL 522 (700)
Q Consensus 443 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 522 (700)
..+.. +++|+.|
T Consensus 171 ~~~~~--------------------------------------------------------------------l~~L~~L 182 (285)
T 1ozn_A 171 RAFRG--------------------------------------------------------------------LHSLDRL 182 (285)
T ss_dssp TTTTT--------------------------------------------------------------------CTTCCEE
T ss_pred HHhcC--------------------------------------------------------------------ccccCEE
Confidence 33333 4788999
Q ss_pred ECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317 523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 523 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 602 (700)
++++|.+++..|..++.+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.|.+.
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~ 261 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP 261 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCB
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccc
Confidence 99999999999999999999999999999999877788999999999999999998655432 12234555667778888
Q ss_pred ccCCC
Q 043317 603 GLIPD 607 (700)
Q Consensus 603 ~~~p~ 607 (700)
+..|.
T Consensus 262 c~~p~ 266 (285)
T 1ozn_A 262 CSLPQ 266 (285)
T ss_dssp EEESG
T ss_pred cCCch
Confidence 77775
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.5e-29 Score=255.68 Aligned_cols=248 Identities=21% Similarity=0.246 Sum_probs=174.8
Q ss_pred CCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCC-CCcchhhc-------CCCCCcEEEcccCcCcccchhhc--
Q 043317 281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS-GHIPHWMG-------NFSNLEILLMSNNCLEGNIPVQL-- 350 (700)
Q Consensus 281 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-- 350 (700)
.++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34566666666666 444444433 666677766663 33444443 56777777777777776666655
Q ss_pred cCCCCCCEEEccCccCcccCCCcc-CC-----CCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccccc--CChhh-
Q 043317 351 LNHRTLKLLSVSENYLSGSMTSSF-NL-----SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ--IPDQI- 421 (700)
Q Consensus 351 ~~~~~L~~L~l~~n~l~~~~~~~~-~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~--~~~~~- 421 (700)
..+++|++|++++|.+++. +..+ .+ ++|++|++++|++++..|..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6677777777777777766 4433 33 7888888888888877777888888888888888887654 23344
Q ss_pred -hccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceE
Q 043317 422 -CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKV 500 (700)
Q Consensus 422 -~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 500 (700)
..+++|++|++++|++++ ++.....+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~~--------------------------------------------------- 224 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMET-PSGVCSALA--------------------------------------------------- 224 (312)
T ss_dssp TTSCTTCCEEECTTSCCCC-HHHHHHHHH---------------------------------------------------
T ss_pred hccCCCCCEEECCCCcCcc-hHHHHHHHH---------------------------------------------------
Confidence 778888888888888762 111110000
Q ss_pred EEeeccccccccCccccccceEECCCCcCcccCC-ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317 501 EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVP-SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579 (700)
Q Consensus 501 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 579 (700)
..++.|+.|++++|.+++.+| ..+..+++|++|+|++|+++ .+|..+. ++|+.|||++|++++
T Consensus 225 -------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 225 -------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp -------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred -------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence 124678888999998887765 45667889999999999998 6777766 789999999999987
Q ss_pred cCcccccCCCCCCeEeccCCcCcc
Q 043317 580 QIPAQLIELNFLSNFNVSYNNLSG 603 (700)
Q Consensus 580 ~~p~~l~~l~~L~~L~ls~N~l~~ 603 (700)
. |. +..+++|++|++++|++++
T Consensus 289 ~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 289 N-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hh-HhhCCCCCEEeccCCCCCC
Confidence 6 65 8889999999999999875
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=249.10 Aligned_cols=247 Identities=22% Similarity=0.215 Sum_probs=135.2
Q ss_pred CcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcc
Q 043317 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS 314 (700)
Q Consensus 235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 314 (700)
.+.++.++..++. +|..+ .++++.|++++|++.+..+..+.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSS-CCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCc-CCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4456666665543 44322 2455555555555555555555555555555555555554444555555555555555
Q ss_pred cCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCc-CccCc
Q 043317 315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNA-LSGPI 393 (700)
Q Consensus 315 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 393 (700)
+|++++..+..|..+++|++|++++|.+.+..+..|..+ ++|++|++++|. +....
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-----------------------~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-----------------------PSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-----------------------TTCCEEECCCCTTCCEEC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-----------------------cccCEeCCCCCCCcceeC
Confidence 555554444445555555555555555544434444444 455555555422 22222
Q ss_pred chhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccc
Q 043317 394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCY 473 (700)
Q Consensus 394 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (700)
+..|..+++|++|++++|+++ .+| .+..+++|+.|++++|++++..|..|.+
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------- 229 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-------------------------- 229 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------
T ss_pred cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------
Confidence 234455555555555555555 233 2455566666666666665444443332
Q ss_pred cccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccC
Q 043317 474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL 553 (700)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 553 (700)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 230 ------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 230 ------------------------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ------------------------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ------------------------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 24555666666666666666666667777777777777
Q ss_pred ccccCcccccccCCCEEeCCCCcCc
Q 043317 554 SGSIPRSFSNLQMIESLDLSNNRLS 578 (700)
Q Consensus 554 ~~~~p~~~~~l~~L~~L~Ls~N~l~ 578 (700)
++..+..|..+++|+.|+|++|++.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 7666666666777777777777664
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=3.1e-29 Score=280.84 Aligned_cols=379 Identities=16% Similarity=0.094 Sum_probs=193.8
Q ss_pred CCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCc
Q 043317 133 HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL 212 (700)
Q Consensus 133 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 212 (700)
.+++|++|++++|.+++..+..+...+++|++|++++|. .+.......+...+++|+
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-----------------------~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-----------------------GFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-----------------------EEEHHHHHHHHHHCTTCC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-----------------------CCCHHHHHHHHHhCCCCC
Confidence 344555555555555544444333345555555555442 222111223333356666
Q ss_pred EEEccCCcCCccCCcccc----CCCCCcEEEccCcc--CCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcE
Q 043317 213 VLDISNNHFEGNIPSSVG----EMKELIILHLSKNN--FSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEF 286 (700)
Q Consensus 213 ~L~L~~n~i~~~~~~~l~----~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 286 (700)
+|++++|.+++..+..+. .+++|++|++++|. +.......+...+++|++|++++|...+..+..+..+++|++
T Consensus 160 ~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239 (594)
T ss_dssp EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE
T ss_pred EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceE
Confidence 666666665543333332 45567777777665 211111222334567777777766322224455556667777
Q ss_pred EEcccC-------cccccccccccCCCCCcEE-EcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch-hhccCCCCCC
Q 043317 287 LYLENN-------KFSGKIEEGLLNSTKLYQL-DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP-VQLLNHRTLK 357 (700)
Q Consensus 287 L~L~~n-------~l~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~ 357 (700)
|++..+ .+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|+
T Consensus 240 L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~ 317 (594)
T 2p1m_B 240 LGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317 (594)
T ss_dssp EECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCC
T ss_pred cccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcC
Confidence 764433 2332 23356666777776 3333222 2344444556777777777777653322 2245667777
Q ss_pred EEEccCccCcccCCC-cc-CCCCCcEEEccC---------CcCccCcchhhh-CCCCccEEECcCCcccccCChhhh-cc
Q 043317 358 LLSVSENYLSGSMTS-SF-NLSSLKHLYVQK---------NALSGPIPDMLF-RSSKLMTLDLRGNNLEGQIPDQIC-QL 424 (700)
Q Consensus 358 ~L~l~~n~l~~~~~~-~~-~l~~L~~L~l~~---------n~l~~~~~~~~~-~~~~L~~L~l~~N~l~~~~~~~~~-~l 424 (700)
.|++++| +...... .. .+++|++|++++ +.+++.....+. .+++|++|+++.|.+++..+..+. .+
T Consensus 318 ~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~ 396 (594)
T 2p1m_B 318 RLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396 (594)
T ss_dssp EEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred EEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC
Confidence 7777766 3322111 11 366777777732 344432222222 367777777777777655555554 47
Q ss_pred CCCCEEecC--C----CccCCCCCc-hhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCccc
Q 043317 425 RRLGMMDLS--H----NRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQ 497 (700)
Q Consensus 425 ~~L~~L~Ls--~----N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (700)
++|+.|+++ + +.+++.... .+..+
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l------------------------------------------------- 427 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI------------------------------------------------- 427 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHH-------------------------------------------------
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHH-------------------------------------------------
Confidence 777777777 2 333311100 11100
Q ss_pred ceEEEeeccccccccCccccccceEECCCCcCcccCCccccC-cCCCcEEeCCCccCccccCccc-ccccCCCEEeCCCC
Q 043317 498 VKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD-LQKIRGLNLSHNCLSGSIPRSF-SNLQMIESLDLSNN 575 (700)
Q Consensus 498 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N 575 (700)
...+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|+.|+|++|
T Consensus 428 ---------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 428 ---------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp ---------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ---------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 01134566666655 444444444443 5666666666666654444333 45666666666666
Q ss_pred cCcccCcc-cccCCCCCCeEeccCCcCc
Q 043317 576 RLSGQIPA-QLIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 576 ~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 602 (700)
++++..+. ....+++|++|++++|+++
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 66543333 2233566666666666653
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-26 Score=249.96 Aligned_cols=248 Identities=21% Similarity=0.201 Sum_probs=131.6
Q ss_pred CcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcc
Q 043317 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS 314 (700)
Q Consensus 235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 314 (700)
...++.++..++. +|..+ .+++++|++++|++.+..+..+.++++|+.|++++|++++..+..|..+++|++|+++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCc-cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3455666555543 33322 2455555555555555555555555555555555555555544555555555555555
Q ss_pred cCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcc
Q 043317 315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIP 394 (700)
Q Consensus 315 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 394 (700)
+|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++| |.+....+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~----------------------~~l~~i~~ 189 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL----------------------KKLEYISE 189 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC----------------------TTCCEECT
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC----------------------CCccccCh
Confidence 55555444444555555555555555555433444444445555554442 22222222
Q ss_pred hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317 395 DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI 474 (700)
Q Consensus 395 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 474 (700)
..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++..|..|.+
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------- 240 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHG--------------------------- 240 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTT---------------------------
T ss_pred hhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccC---------------------------
Confidence 234455555555555555553 22 3455555556666665555444433332
Q ss_pred ccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCc
Q 043317 475 GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLS 554 (700)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 554 (700)
+++|+.|++++|.+++..|..|..+++|+.|+|++|+++
T Consensus 241 -----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 241 -----------------------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp -----------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 244555666666666556666666666666666666666
Q ss_pred cccCcccccccCCCEEeCCCCcCc
Q 043317 555 GSIPRSFSNLQMIESLDLSNNRLS 578 (700)
Q Consensus 555 ~~~p~~~~~l~~L~~L~Ls~N~l~ 578 (700)
+..+..|..+++|+.|+|++|++.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccChHHhccccCCCEEEccCCCcC
Confidence 555566666666666666666654
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.6e-28 Score=249.26 Aligned_cols=251 Identities=21% Similarity=0.222 Sum_probs=154.7
Q ss_pred cccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc-ccccccC-------CCCCCcEEEcccCccccccc
Q 043317 228 SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG-QFFSKDL-------NLTQMEFLYLENNKFSGKIE 299 (700)
Q Consensus 228 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~ 299 (700)
.++..++|+.|++++|.+ .+|..+... |+.|++++|.+.. ..+..+. ++++|++|++++|++++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345667888889999988 567665432 7777888887743 3333332 45566666666666665555
Q ss_pred ccc--cCCCCCcEEEcccCcCCCCcchhhcCC-----CCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCC
Q 043317 300 EGL--LNSTKLYQLDISHNFLSGHIPHWMGNF-----SNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS 372 (700)
Q Consensus 300 ~~~--~~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 372 (700)
..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~--------------------- 170 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR--------------------- 170 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC---------------------
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc---------------------
Confidence 544 5556666666666666544 4444443 4455555555544444434444
Q ss_pred ccCCCCCcEEEccCCcCccC--cchhh--hCCCCccEEECcCCcccc---cCChhhhccCCCCEEecCCCccCCCCCchh
Q 043317 373 SFNLSSLKHLYVQKNALSGP--IPDML--FRSSKLMTLDLRGNNLEG---QIPDQICQLRRLGMMDLSHNRFNGSIPSCF 445 (700)
Q Consensus 373 ~~~l~~L~~L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 445 (700)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|++++ .....+..+++|++|++++|++++..|...
T Consensus 171 --~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 171 --VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp --CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred --cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 455555555555555433 22233 556677777777777662 112334566777777777777765443211
Q ss_pred hhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECC
Q 043317 446 TNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLS 525 (700)
Q Consensus 446 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls 525 (700)
. ..+++|+.|+|+
T Consensus 249 ~-------------------------------------------------------------------~~l~~L~~L~Ls 261 (312)
T 1wwl_A 249 C-------------------------------------------------------------------DWPSQLNSLNLS 261 (312)
T ss_dssp C-------------------------------------------------------------------CCCTTCCEEECT
T ss_pred h-------------------------------------------------------------------hhcCCCCEEECC
Confidence 0 113567778888
Q ss_pred CCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317 526 CNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579 (700)
Q Consensus 526 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 579 (700)
+|.++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|++++
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88887 6666665 7888888888888865 55 7888888888888888875
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-27 Score=242.27 Aligned_cols=244 Identities=20% Similarity=0.195 Sum_probs=207.2
Q ss_pred CCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEcc
Q 043317 283 QMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVS 362 (700)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 362 (700)
.++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556777777776666666777899999999999998888999999999999999999987665 8999999999999
Q ss_pred CccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317 363 ENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442 (700)
Q Consensus 363 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 442 (700)
+|.+++..+ .++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 999987653 489999999999998765543 6789999999999998888899999999999999999986544
Q ss_pred chhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceE
Q 043317 443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL 522 (700)
Q Consensus 443 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 522 (700)
..+.. .++.|+.|
T Consensus 162 ~~~~~-------------------------------------------------------------------~l~~L~~L 174 (317)
T 3o53_A 162 AELAA-------------------------------------------------------------------SSDTLEHL 174 (317)
T ss_dssp GGGGG-------------------------------------------------------------------GTTTCCEE
T ss_pred HHHhh-------------------------------------------------------------------ccCcCCEE
Confidence 43321 24788999
Q ss_pred ECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317 523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 523 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 602 (700)
++++|.+++. | ....+++|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus 175 ~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 175 NLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999966 3 23458999999999999996 5556999999999999999999 56888999999999999999998
Q ss_pred -ccCC
Q 043317 603 -GLIP 606 (700)
Q Consensus 603 -~~~p 606 (700)
+.+|
T Consensus 251 ~~~~~ 255 (317)
T 3o53_A 251 CGTLR 255 (317)
T ss_dssp HHHHH
T ss_pred CcCHH
Confidence 5444
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-27 Score=258.06 Aligned_cols=235 Identities=21% Similarity=0.192 Sum_probs=145.4
Q ss_pred CCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317 282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 361 (700)
++|+.|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 355555666655555555555566666666666666554443 5556666666666666653221 256666666
Q ss_pred cCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh-ccCCCCEEecCCCccCCC
Q 043317 362 SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC-QLRRLGMMDLSHNRFNGS 440 (700)
Q Consensus 362 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 440 (700)
++|.+++.++.. +++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 107 ~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 666666555442 45677777777777666666666677777777777777766666664 567777777777766532
Q ss_pred CCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccc
Q 043317 441 IPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV 520 (700)
Q Consensus 441 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~ 520 (700)
.+. ..++.|+
T Consensus 185 ~~~----------------------------------------------------------------------~~l~~L~ 194 (487)
T 3oja_A 185 KGQ----------------------------------------------------------------------VVFAKLK 194 (487)
T ss_dssp ECC----------------------------------------------------------------------CCCTTCC
T ss_pred ccc----------------------------------------------------------------------ccCCCCC
Confidence 110 0135666
Q ss_pred eEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc-ccCcccccCCCCCCeEecc
Q 043317 521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS-GQIPAQLIELNFLSNFNVS 597 (700)
Q Consensus 521 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 597 (700)
.|+|++|.+++.+| .+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|+++ +.+|..+..++.|+.++++
T Consensus 195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 67777777765433 36667777777777777764 5556666777777777777776 5566666666666666664
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-25 Score=247.94 Aligned_cols=269 Identities=24% Similarity=0.265 Sum_probs=170.0
Q ss_pred cCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEE
Q 043317 209 KKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288 (700)
Q Consensus 209 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 288 (700)
.+++.|++++|.++ .+|..+. ++|+.|++++|.++. +|. .+++|++|++++|++++... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 36899999999988 5676555 789999999998874 443 36788888888888765332 567788888
Q ss_pred cccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc
Q 043317 289 LENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG 368 (700)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 368 (700)
+++|++++. |. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+.+|+.|++++|.+++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 888877753 33 45677777887777774 3432 3677777777777764 332 24566777777777666
Q ss_pred cCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhh
Q 043317 369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448 (700)
Q Consensus 369 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 448 (700)
.+ ..+++|+.|++++|++++ +|.. .++|+.|++++|.++ .+|. .+++|+.|++++|++++ +|.
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp~----- 238 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LPV----- 238 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CCC-----
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CCC-----
Confidence 44 234666667777666663 3322 356666666666666 3332 23556666666666653 220
Q ss_pred hhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCc
Q 043317 449 LQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNE 528 (700)
Q Consensus 449 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 528 (700)
.+++|+.|++++|.
T Consensus 239 ------------------------------------------------------------------~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 239 ------------------------------------------------------------------LPSELKELMVSGNR 252 (622)
T ss_dssp ------------------------------------------------------------------CCTTCCEEECCSSC
T ss_pred ------------------------------------------------------------------CCCcCcEEECCCCC
Confidence 02445566666666
Q ss_pred CcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC
Q 043317 529 LTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN 589 (700)
Q Consensus 529 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 589 (700)
++ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 66 3333 4456666666666666 4556666666666666666666666665554443
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.4e-25 Score=245.57 Aligned_cols=266 Identities=26% Similarity=0.285 Sum_probs=151.4
Q ss_pred cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS 192 (700)
Q Consensus 113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 192 (700)
++++|++++|.++.+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 47777777777777776654 67777777777776 5665 45677777777777663 332 45666666666
Q ss_pred CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272 (700)
Q Consensus 193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 272 (700)
+|.+. .+|. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC
T ss_pred CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCC
Confidence 66665 3444 24567777777776663 3432 3566667777666654 221 24556666666666654
Q ss_pred ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccC
Q 043317 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352 (700)
Q Consensus 273 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 352 (700)
.. ..+++|+.|++++|++++ +|.. .++|+.|++++|.++. +|. .+++|++|++++|.+++ +| ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CC
Confidence 22 234556666666666653 2221 2456666666666552 232 13455566666665553 33 23
Q ss_pred CCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhc
Q 043317 353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ 423 (700)
Q Consensus 353 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~ 423 (700)
+++|+.|++++|.++..+. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus 240 l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 4455555555555554333 3445555555555555 44555555555555555555555555444443
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.1e-28 Score=276.30 Aligned_cols=228 Identities=14% Similarity=0.044 Sum_probs=135.2
Q ss_pred ccCCcEE-EccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccc-ccccCCCCCCc
Q 043317 208 LKKLLVL-DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF-FSKDLNLTQME 285 (700)
Q Consensus 208 l~~L~~L-~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 285 (700)
+++|+.+ .+.+... ..++..+..+++|+.|++++|.+++.....+...+++|++|++++| +.... +.....+++|+
T Consensus 264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 5566666 2322211 2233334455666666666666544333333445666666666666 32221 11122356677
Q ss_pred EEEccc---------Cccccccccccc-CCCCCcEEEcccCcCCCCcchhhc-CCCCCcEEEcc--c----CcCcc----
Q 043317 286 FLYLEN---------NKFSGKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMG-NFSNLEILLMS--N----NCLEG---- 344 (700)
Q Consensus 286 ~L~L~~---------n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~---- 344 (700)
+|++.+ +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|+.|+++ + +.+++
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 776632 344433222232 367788887777777755555454 47788888887 3 44441
Q ss_pred -cchhhccCCCCCCEEEccCccCcccCCCcc--CCCCCcEEEccCCcCccCcchhh-hCCCCccEEECcCCcccccCCh-
Q 043317 345 -NIPVQLLNHRTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDML-FRSSKLMTLDLRGNNLEGQIPD- 419 (700)
Q Consensus 345 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~N~l~~~~~~- 419 (700)
.++..+..+++|+.|++++ .+++.....+ .+++|++|++++|.+++..+..+ ..+++|++|++++|++++....
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 2233356677888888876 5554333333 37788888888888866555444 5688888888888888644433
Q ss_pred hhhccCCCCEEecCCCccC
Q 043317 420 QICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 420 ~~~~l~~L~~L~Ls~N~l~ 438 (700)
....+++|+.|++++|+++
T Consensus 501 ~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TGGGGGGSSEEEEESSCCB
T ss_pred HHHhCCCCCEEeeeCCCCC
Confidence 3445788888999888774
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-26 Score=249.92 Aligned_cols=223 Identities=23% Similarity=0.220 Sum_probs=195.3
Q ss_pred CCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEE
Q 043317 304 NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLY 383 (700)
Q Consensus 304 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 383 (700)
.+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++.++ .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 34589999999999999888999999999999999999997666 8999999999999999997664 38999999
Q ss_pred ccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317 384 VQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL 463 (700)
Q Consensus 384 l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 463 (700)
+++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------- 166 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------- 166 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence 999999976554 4588999999999999988989999999999999999998766655532
Q ss_pred cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC
Q 043317 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI 543 (700)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 543 (700)
.++.|+.|+|++|.+++..+ ...+++|
T Consensus 167 ---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L 193 (487)
T 3oja_A 167 ---------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKL 193 (487)
T ss_dssp ---------------------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTC
T ss_pred ---------------------------------------------------hCCcccEEecCCCccccccc--cccCCCC
Confidence 14788999999999997733 4469999
Q ss_pred cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc-ccCC
Q 043317 544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS-GLIP 606 (700)
Q Consensus 544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p 606 (700)
+.|+|++|++++.+| .+..+++|+.|||++|++++ +|..+..+++|+.|++++|++. +.+|
T Consensus 194 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 999999999997544 59999999999999999996 6778999999999999999998 4444
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.1e-25 Score=225.76 Aligned_cols=212 Identities=22% Similarity=0.231 Sum_probs=119.6
Q ss_pred CCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECc
Q 043317 331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLR 409 (700)
Q Consensus 331 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 409 (700)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443333344444444444444444444444333 44455555555555544444445555555555555
Q ss_pred CCcccccCChhhhccCCCCEEecCCCccCCC-CCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccc
Q 043317 410 GNNLEGQIPDQICQLRRLGMMDLSHNRFNGS-IPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK 488 (700)
Q Consensus 410 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (700)
+|++.+..+..+..+++|++|++++|++++. +|..+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 5555544444455555555555555555432 2333322
Q ss_pred ccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCc----EEeCCCccCccccCcccccc
Q 043317 489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR----GLNLSHNCLSGSIPRSFSNL 564 (700)
Q Consensus 489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l 564 (700)
+++|+.|++++|++++..+..+..+.+|+ +|++++|++++..+..+..
T Consensus 148 ---------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~- 199 (276)
T 2z62_A 148 ---------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE- 199 (276)
T ss_dssp ---------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-
T ss_pred ---------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-
Confidence 24455566666666555555555555555 6777777777655555443
Q ss_pred cCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCC
Q 043317 565 QMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQY 611 (700)
Q Consensus 565 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 611 (700)
.+|+.|++++|++++..+..+..+++|++|++++|++++..|...++
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 47888888888888776667788888888888888888776654333
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.9e-24 Score=216.71 Aligned_cols=211 Identities=21% Similarity=0.219 Sum_probs=163.7
Q ss_pred CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEc
Q 043317 306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYV 384 (700)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l 384 (700)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 467777777777776666677777777777777777776666677777788888888888777776666 7788888888
Q ss_pred cCCcCccCcchhhhCCCCccEEECcCCccccc-CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317 385 QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ-IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL 463 (700)
Q Consensus 385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~ 463 (700)
++|++++..+..+..+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~------------- 174 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ------------- 174 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-------------
Confidence 88888766666778888888888888888763 5888888899999999999888665555555421
Q ss_pred cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccc-eEECCCCcCcccCCccccCcCC
Q 043317 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV-GLDLSCNELTGNVPSEIGDLQK 542 (700)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~ 542 (700)
++.+. .|++++|.+++..+..+.. .+
T Consensus 175 ----------------------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~~-~~ 201 (276)
T 2z62_A 175 ----------------------------------------------------MPLLNLSLDLSLNPMNFIQPGAFKE-IR 201 (276)
T ss_dssp ----------------------------------------------------CTTCCEEEECCSSCCCEECTTSSCS-CC
T ss_pred ----------------------------------------------------ccccceeeecCCCcccccCccccCC-Cc
Confidence 12232 6899999999776665554 48
Q ss_pred CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
|++|++++|++++..+..|+++++|+.|++++|++++..|
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999999999998777788999999999999999997544
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=5.2e-24 Score=212.50 Aligned_cols=204 Identities=24% Similarity=0.270 Sum_probs=143.9
Q ss_pred CcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcC
Q 043317 332 LEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG 410 (700)
Q Consensus 332 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 410 (700)
.+.++++++.++ .+|..+. ++++.|++++|.+++..+..+ .+++|++|++++|+++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 444555555544 2333221 345555555555555555444 566666666666666644444556667777777777
Q ss_pred CcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccccc
Q 043317 411 NNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRD 490 (700)
Q Consensus 411 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (700)
|++++..+..+..+++|++|++++|++++..+..|..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 7777655566677777777777777776544443332
Q ss_pred CCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEE
Q 043317 491 MFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESL 570 (700)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 570 (700)
+++|+.|++++|.+++..+..|+.+++|++|++++|++++..+..|.++++|+.|
T Consensus 132 -------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 132 -------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp -------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 3667778888888887666778888999999999999998777788999999999
Q ss_pred eCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317 571 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 571 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 606 (700)
+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999998777788899999999999999986554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.7e-23 Score=206.31 Aligned_cols=204 Identities=23% Similarity=0.274 Sum_probs=151.3
Q ss_pred CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEcc
Q 043317 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQ 385 (700)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~ 385 (700)
..+.++++++.++ .+|..+. +++++|++++|++++..+..+..+++|++|++++|.++...+..+ .+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4556666666666 3443332 456667777766665555566667777777777777776666665 57777777787
Q ss_pred CCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccC
Q 043317 386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSI 465 (700)
Q Consensus 386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 465 (700)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------ 155 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------------------ 155 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC------------------
Confidence 77777666666777888888888888888777777888888888888888887544333332
Q ss_pred CCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcE
Q 043317 466 FPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRG 545 (700)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 545 (700)
+++|+.|++++|.+++..+..|..+++|++
T Consensus 156 --------------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 156 --------------------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --------------------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 367888888888888777778889999999
Q ss_pred EeCCCccCccccCcccccccCCCEEeCCCCcCcccC
Q 043317 546 LNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI 581 (700)
Q Consensus 546 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 581 (700)
|++++|++++..+..|..+++|+.|+|++|++....
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 999999999777778999999999999999987543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.6e-24 Score=213.06 Aligned_cols=203 Identities=19% Similarity=0.263 Sum_probs=146.7
Q ss_pred cCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEE
Q 043317 327 GNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL 406 (700)
Q Consensus 327 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 406 (700)
..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. +....+++|++|++++|++++..+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 344555555555555542 2 2345555666666666665543 222256677777777777776666666777778888
Q ss_pred ECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccc
Q 043317 407 DLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEV 486 (700)
Q Consensus 407 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (700)
++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------- 155 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------------------------------- 155 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------------------------------
Confidence 88888777666666777888888888888777544433332
Q ss_pred ccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccC
Q 043317 487 CKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM 566 (700)
Q Consensus 487 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 566 (700)
+++|+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++
T Consensus 156 -----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 156 -----------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp -----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -----------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 366778888888888777777888999999999999999888888899999
Q ss_pred CCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317 567 IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 567 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 607 (700)
|+.|++++|++.+.. +.|+.+++++|.++|.+|.
T Consensus 207 L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 207 LQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBC
T ss_pred CCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccC
Confidence 999999999888654 4688899999999999986
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.9e-23 Score=210.23 Aligned_cols=204 Identities=21% Similarity=0.194 Sum_probs=120.4
Q ss_pred ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcE
Q 043317 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH 381 (700)
Q Consensus 302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 381 (700)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+++..+. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 456677777777777777 3443332 4677777777777766666677777777777777766654432 24555555
Q ss_pred EEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCC
Q 043317 382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGG 461 (700)
Q Consensus 382 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~ 461 (700)
|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~----------------------------------- 125 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE----------------------------------- 125 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-----------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-----------------------------------
Confidence 555555554 34444444455555555555554433344444444
Q ss_pred CccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcC
Q 043317 462 ELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQ 541 (700)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 541 (700)
|+.|+|++|++++..+..|..++
T Consensus 126 ---------------------------------------------------------L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 126 ---------------------------------------------------------LQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp ---------------------------------------------------------CCEEECTTSCCCCCCTTTTTTCT
T ss_pred ---------------------------------------------------------CCEEECCCCCCCccChhhccccc
Confidence 44455555555544445555566
Q ss_pred CCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcc
Q 043317 542 KIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 603 (700)
Q Consensus 542 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 603 (700)
+|+.|+|++|++++..+..|.++++|+.|+|++|+++ .+|..+..+..|+.+++++|++.+
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 6666666666666555555566666666666666666 445555556666666666666653
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.9e-23 Score=207.90 Aligned_cols=206 Identities=23% Similarity=0.215 Sum_probs=168.1
Q ss_pred ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317 350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429 (700)
Q Consensus 350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 429 (700)
+.++++++.++++++.++..++.. .++++.|++++|++++..+..+..+++|++|++++|.+++..+. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 456677778888887777665544 36788999999999887788899999999999999999865443 78899999
Q ss_pred EecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccc
Q 043317 430 MDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYE 509 (700)
Q Consensus 430 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 509 (700)
|++++|+++ .+|..+..
T Consensus 82 L~Ls~N~l~-~l~~~~~~-------------------------------------------------------------- 98 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQT-------------------------------------------------------------- 98 (290)
T ss_dssp EECCSSCCS-SCCCCTTT--------------------------------------------------------------
T ss_pred EECCCCcCC-cCchhhcc--------------------------------------------------------------
Confidence 999999987 44543322
Q ss_pred cccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC
Q 043317 510 LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN 589 (700)
Q Consensus 510 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 589 (700)
+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..++
T Consensus 99 ------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 99 ------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp ------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred ------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 47789999999999988889999999999999999999988888899999999999999999988777889999
Q ss_pred CCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcCc
Q 043317 590 FLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGP 628 (700)
Q Consensus 590 ~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~ 628 (700)
+|++|++++|+++...+.......+......||++.|.+
T Consensus 173 ~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 999999999999954444444444455556677777653
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.2e-24 Score=227.05 Aligned_cols=176 Identities=22% Similarity=0.197 Sum_probs=90.8
Q ss_pred EEcCCcccccccccccCCCCCCcEEEcccCccccccc----ccccCCC-CCcEEEcccCcCCCCcchhhcCC-----CCC
Q 043317 263 LDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE----EGLLNST-KLYQLDISHNFLSGHIPHWMGNF-----SNL 332 (700)
Q Consensus 263 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L 332 (700)
++++.|.+++.++..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666665555555556666666666665444 4455555 56666666666665555555443 566
Q ss_pred cEEEcccCcCcccchhhc----cCC-CCCCEEEccCccCcccCCCcc-----C-CCCCcEEEccCCcCccCcc----hhh
Q 043317 333 EILLMSNNCLEGNIPVQL----LNH-RTLKLLSVSENYLSGSMTSSF-----N-LSSLKHLYVQKNALSGPIP----DML 397 (700)
Q Consensus 333 ~~L~L~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~~~~-----~-l~~L~~L~l~~n~l~~~~~----~~~ 397 (700)
++|++++|.+++..+..+ ..+ ++|++|++++|.+++.....+ . .++|++|++++|++++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666654444432 222 455555555555554443322 1 2355555555555543222 222
Q ss_pred hCCC-CccEEECcCCcccccCChhhhc----c-CCCCEEecCCCccC
Q 043317 398 FRSS-KLMTLDLRGNNLEGQIPDQICQ----L-RRLGMMDLSHNRFN 438 (700)
Q Consensus 398 ~~~~-~L~~L~l~~N~l~~~~~~~~~~----l-~~L~~L~Ls~N~l~ 438 (700)
...+ +|++|++++|++++..+..+.. + ++|+.|++++|++.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 3333 5555555555554444333322 2 35555555555544
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.9e-23 Score=208.60 Aligned_cols=210 Identities=20% Similarity=0.190 Sum_probs=164.9
Q ss_pred ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCc
Q 043317 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLK 380 (700)
Q Consensus 302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~ 380 (700)
...+++|+.|++++|.++.. ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+ .+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44566777777777776632 246677777777777777764 2 357777788888888888887777666 778888
Q ss_pred EEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccC
Q 043317 381 HLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFG 460 (700)
Q Consensus 381 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~ 460 (700)
+|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------- 179 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK------------- 179 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC-------------
Confidence 8888888888777777888888999999999888777777888899999999999888655544433
Q ss_pred CCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCc
Q 043317 461 GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL 540 (700)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 540 (700)
+++|+.|++++|.+++..|..++.+
T Consensus 180 -------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l 204 (272)
T 3rfs_A 180 -------------------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRL 204 (272)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -------------------------------------------------------CccCCEEECCCCcCCccCHHHHhCC
Confidence 3678889999999998888888999
Q ss_pred CCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCC
Q 043317 541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNF 590 (700)
Q Consensus 541 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 590 (700)
++|+.|++++|.+.+. ++.|+.|+++.|+++|.+|.+++.+..
T Consensus 205 ~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 205 TSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9999999999998854 457899999999999999988766543
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.6e-23 Score=205.01 Aligned_cols=212 Identities=20% Similarity=0.189 Sum_probs=162.9
Q ss_pred CCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCC
Q 043317 355 TLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434 (700)
Q Consensus 355 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 434 (700)
..+.++++++.++..+... .++++.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4566777777777655443 25788888888888877777888888999999999998887787888899999999999
Q ss_pred CccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCc
Q 043317 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGS 514 (700)
Q Consensus 435 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 514 (700)
|++++..+..|..
T Consensus 93 n~l~~~~~~~~~~------------------------------------------------------------------- 105 (251)
T 3m19_A 93 NQLASLPLGVFDH------------------------------------------------------------------- 105 (251)
T ss_dssp SCCCCCCTTTTTT-------------------------------------------------------------------
T ss_pred CcccccChhHhcc-------------------------------------------------------------------
Confidence 9888555444433
Q ss_pred cccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF 594 (700)
Q Consensus 515 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 594 (700)
+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..|+++++|+.|+|++|++++..|..+..+++|++|
T Consensus 106 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 106 -LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 3678889999999997777788999999999999999998777789999999999999999998888899999999999
Q ss_pred eccCCcCcccCCCCCCCCCcC------CCccCCCcCCcCcCCCCCCCCC
Q 043317 595 NVSYNNLSGLIPDKGQYSTFD------ESSYRGNLYLCGPTINKSCNSA 637 (700)
Q Consensus 595 ~ls~N~l~~~~p~~~~~~~~~------~~~~~gn~~lcg~~~~~~c~~~ 637 (700)
++++|++++..+...++..|- .....|+ .+|+.|....|..+
T Consensus 185 ~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp ECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred EeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 999999997755433332221 1112233 36666777778755
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.4e-24 Score=226.50 Aligned_cols=199 Identities=20% Similarity=0.176 Sum_probs=84.0
Q ss_pred EccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc----cccCCCC-CCcEEEcccCcccccccccccCC-----CCC
Q 043317 239 HLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF----SKDLNLT-QMEFLYLENNKFSGKIEEGLLNS-----TKL 308 (700)
Q Consensus 239 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~-----~~L 308 (700)
+++.|.+++.+|. +....++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4444444443332 22223335555555555444433 3344444 45555555555544434333332 455
Q ss_pred cEEEcccCcCCCCcchhhc----CC-CCCcEEEcccCcCcccchhhcc----C-CCCCCEEEccCccCcccCCCcc----
Q 043317 309 YQLDISHNFLSGHIPHWMG----NF-SNLEILLMSNNCLEGNIPVQLL----N-HRTLKLLSVSENYLSGSMTSSF---- 374 (700)
Q Consensus 309 ~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~~~~---- 374 (700)
++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+. . ..+|++|++++|.+++.....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 5555555555443333222 22 4455555555555443333221 1 2345555555555443222111
Q ss_pred -CCC-CCcEEEccCCcCccCcchhhh----CC-CCccEEECcCCccccc----CChhhhc-cCCCCEEecCCCccC
Q 043317 375 -NLS-SLKHLYVQKNALSGPIPDMLF----RS-SKLMTLDLRGNNLEGQ----IPDQICQ-LRRLGMMDLSHNRFN 438 (700)
Q Consensus 375 -~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~ 438 (700)
..+ +|++|++++|++++..+..+. .+ ++|++|++++|++++. ++..+.. .++|++|++++|+++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 122 455555555555443333222 22 3455555555554431 2223332 224555555555444
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1e-24 Score=229.87 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=60.4
Q ss_pred ccccceEECCCCcCc----ccCCccccCcCCCcEEeCCCccCccc----cCccccc--ccCCCEEeCCCCcCcc----cC
Q 043317 516 LNYMVGLDLSCNELT----GNVPSEIGDLQKIRGLNLSHNCLSGS----IPRSFSN--LQMIESLDLSNNRLSG----QI 581 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~ 581 (700)
+++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. +|..+.. +++|+.|+|++|++++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 356666777777764 45566667777777777777777654 4555533 6777777777777776 36
Q ss_pred cccc-cCCCCCCeEeccCCcCcccCC
Q 043317 582 PAQL-IELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 582 p~~l-~~l~~L~~L~ls~N~l~~~~p 606 (700)
|..+ .++++|++|++++|++++..|
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchh
Confidence 6665 456777777777777775543
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=210.09 Aligned_cols=81 Identities=31% Similarity=0.377 Sum_probs=56.4
Q ss_pred cccceEECCCCcCcccCCccccCc---CCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCe
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDL---QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 593 (700)
++|+.|||++|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 556667777777776666666655 57777777777777 5566553 6777888888877754 33 566777888
Q ss_pred EeccCCcCc
Q 043317 594 FNVSYNNLS 602 (700)
Q Consensus 594 L~ls~N~l~ 602 (700)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 888888776
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=5.8e-23 Score=209.40 Aligned_cols=227 Identities=20% Similarity=0.228 Sum_probs=183.1
Q ss_pred CCCcEEEcccCcccccccc---cccCCCCCcEEEcccCcCCCCcchhh--cCCCCCcEEEcccCcCcccch----hhccC
Q 043317 282 TQMEFLYLENNKFSGKIEE---GLLNSTKLYQLDISHNFLSGHIPHWM--GNFSNLEILLMSNNCLEGNIP----VQLLN 352 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~ 352 (700)
..++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888887632111 12234679999999999999888887 889999999999999987544 44567
Q ss_pred CCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccC--c--chhhhCCCCccEEECcCCcccccCCh----hhhc
Q 043317 353 HRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGP--I--PDMLFRSSKLMTLDLRGNNLEGQIPD----QICQ 423 (700)
Q Consensus 353 ~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~N~l~~~~~~----~~~~ 423 (700)
+++|++|++++|.+++..+..+ .+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 9999999999999999888887 899999999999998652 2 2234678999999999999973 333 3578
Q ss_pred cCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEe
Q 043317 424 LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFV 503 (700)
Q Consensus 424 l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 503 (700)
+++|++|++++|++.+..|..+..+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~------------------------------------------------------- 247 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRC------------------------------------------------------- 247 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSC-------------------------------------------------------
T ss_pred CCCCCEEECCCCCCCccchhhHHhc-------------------------------------------------------
Confidence 8999999999999998777665443
Q ss_pred eccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317 504 TKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579 (700)
Q Consensus 504 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 579 (700)
..+++|+.|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus 248 ----------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 ----------MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ----------CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ----------cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 11368899999999999 6777775 7999999999999964 43 6889999999999999974
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.7e-23 Score=216.43 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=50.0
Q ss_pred cccceEECCCCc-CcccCCccccCcCCCcEEeCCCcc-CccccCcccccccCCCEEeCCCCcCcccCcccccCC-CCCCe
Q 043317 517 NYMVGLDLSCNE-LTGNVPSEIGDLQKIRGLNLSHNC-LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL-NFLSN 593 (700)
Q Consensus 517 ~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~ 593 (700)
++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.|++++| ++. ..+..+ ..+..
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~ 297 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPH 297 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTT
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcc
Confidence 455555666555 444555566666777777777764 22222224666777777777777 332 123333 23556
Q ss_pred EeccCCcCcccCCC
Q 043317 594 FNVSYNNLSGLIPD 607 (700)
Q Consensus 594 L~ls~N~l~~~~p~ 607 (700)
|++++|++++..|.
T Consensus 298 L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 298 LQINCSHFTTIARP 311 (336)
T ss_dssp SEESCCCSCCTTCS
T ss_pred eEEecccCccccCC
Confidence 66777777776664
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.7e-22 Score=197.62 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCc-CcccchhhccCCCCCCEEEccC-ccCcccCCCcc-CCCCCcEEE
Q 043317 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNC-LEGNIPVQLLNHRTLKLLSVSE-NYLSGSMTSSF-NLSSLKHLY 383 (700)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~-~l~~L~~L~ 383 (700)
++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..+ .+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666654444455556666666666664 5544444555555555555555 55555544444 455555555
Q ss_pred ccCCcCccCcchhhhCCCCcc---EEECcCC-cccccCChhhhccCCCC-EEecCCCcc
Q 043317 384 VQKNALSGPIPDMLFRSSKLM---TLDLRGN-NLEGQIPDQICQLRRLG-MMDLSHNRF 437 (700)
Q Consensus 384 l~~n~l~~~~~~~~~~~~~L~---~L~l~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l 437 (700)
+++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ .|++++|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 55555543 333 44444444 4555544 44433333444444444 444444444
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.9e-23 Score=220.16 Aligned_cols=243 Identities=21% Similarity=0.248 Sum_probs=178.6
Q ss_pred ccChhHHhhccCCcEEEccCCcCCccCC----ccccCCCCCcEEEccCccC---CCCCchHH------HhcCCcCcEEEc
Q 043317 199 TLPQDMGTILKKLLVLDISNNHFEGNIP----SSVGEMKELIILHLSKNNF---SEDFSTPF------LTGCISLWFLDL 265 (700)
Q Consensus 199 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~L~~n~l---~~~~~~~~------~~~~~~L~~L~L 265 (700)
.++..+.. +++|++|++++|.+....+ ..+..+++|++|++++|.+ ++.+|..+ +..+++|++|++
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34444444 6678888888887775433 3356778888888887543 33444443 246788888888
Q ss_pred CCccccc----ccccccCCCCCCcEEEcccCccccccccccc----CC---------CCCcEEEcccCcCC-CCcc---h
Q 043317 266 SDNNFYG----QFFSKDLNLTQMEFLYLENNKFSGKIEEGLL----NS---------TKLYQLDISHNFLS-GHIP---H 324 (700)
Q Consensus 266 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~---------~~L~~L~Ls~n~l~-~~~~---~ 324 (700)
++|.+.+ .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++ +.++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 8888876 4556667788888888888888654443333 33 88999999999887 3444 4
Q ss_pred hhcCCCCCcEEEcccCcCcc-----cchhhccCCCCCCEEEccCccCc----ccCCCcc-CCCCCcEEEccCCcCccC--
Q 043317 325 WMGNFSNLEILLMSNNCLEG-----NIPVQLLNHRTLKLLSVSENYLS----GSMTSSF-NLSSLKHLYVQKNALSGP-- 392 (700)
Q Consensus 325 ~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~-~l~~L~~L~l~~n~l~~~-- 392 (700)
.+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ...+..+ .+++|++|++++|++++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 66778899999999998872 34447788899999999999985 3344444 788999999999998765
Q ss_pred --cchhhhC--CCCccEEECcCCcccc----cCChhh-hccCCCCEEecCCCccCCCCC
Q 043317 393 --IPDMLFR--SSKLMTLDLRGNNLEG----QIPDQI-CQLRRLGMMDLSHNRFNGSIP 442 (700)
Q Consensus 393 --~~~~~~~--~~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~p 442 (700)
++..+.. +++|++|++++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5666644 8999999999999987 477777 668999999999999987664
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.1e-22 Score=210.21 Aligned_cols=253 Identities=17% Similarity=0.193 Sum_probs=200.9
Q ss_pred ccEEeCCCCcCccccChhHHhhc--cCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEE
Q 043317 186 LHHLDASSNNFIGTLPQDMGTIL--KKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFL 263 (700)
Q Consensus 186 L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 263 (700)
++.++++++.+. +..+.. + ++++.|++++|.+.+..+. +..+++|++|++++|.+++......+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 677888877765 333333 4 7899999999999876665 66799999999999998765233445779999999
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccC-ccccc-ccccccCCCCCcEEEcccC-cCCCC-cchhhcCCC-CCcEEEcc
Q 043317 264 DLSDNNFYGQFFSKDLNLTQMEFLYLENN-KFSGK-IEEGLLNSTKLYQLDISHN-FLSGH-IPHWMGNFS-NLEILLMS 338 (700)
Q Consensus 264 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~L~ 338 (700)
++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999998888888889999999999999 67753 5666888999999999999 88864 577788999 99999999
Q ss_pred cC--cCc-ccchhhccCCCCCCEEEccCcc-CcccCCCcc-CCCCCcEEEccCCc-CccCcchhhhCCCCccEEECcCCc
Q 043317 339 NN--CLE-GNIPVQLLNHRTLKLLSVSENY-LSGSMTSSF-NLSSLKHLYVQKNA-LSGPIPDMLFRSSKLMTLDLRGNN 412 (700)
Q Consensus 339 ~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~N~ 412 (700)
+| .++ +.++..+..+++|+.|++++|. +++..+..+ .+++|++|++++|. +.......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 455 4567778889999999999999 666555555 78999999999995 33222236788999999999999
Q ss_pred ccccCChhhhcc-CCCCEEecCCCccCCCCCchhhh
Q 043317 413 LEGQIPDQICQL-RRLGMMDLSHNRFNGSIPSCFTN 447 (700)
Q Consensus 413 l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 447 (700)
++. ..+..+ ..++.|++++|++++..|..++.
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 432 234444 34777889999999988877664
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.6e-22 Score=193.50 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=144.6
Q ss_pred CCcEEEcccCcCcccchhhccCCCCCCEEEccCcc-CcccCCCcc-CCCCCcEEEccC-CcCccCcchhhhCCCCccEEE
Q 043317 331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENY-LSGSMTSSF-NLSSLKHLYVQK-NALSGPIPDMLFRSSKLMTLD 407 (700)
Q Consensus 331 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ 407 (700)
++++|++++|++++..+..+.++++|++|++++|. +++..+..+ ++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888886666678888888888888886 777777666 788888888887 888766666777888888888
Q ss_pred CcCCcccccCChhhhccCCCC---EEecCCC-ccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccc
Q 043317 408 LRGNNLEGQIPDQICQLRRLG---MMDLSHN-RFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLD 483 (700)
Q Consensus 408 l~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (700)
+++|++++ +|. +..+++|+ +|++++| ++++..+..|.+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------------------------------------ 153 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG------------------------------------ 153 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT------------------------------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc------------------------------------
Confidence 88888875 554 77777777 8888888 776444333332
Q ss_pred cccccccCCCCcccceEEEeeccccccccCccccccc-eEECCCCcCcccCCccccCcCCCcEEeCCCcc-CccccCccc
Q 043317 484 LEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV-GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNC-LSGSIPRSF 561 (700)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~ 561 (700)
++.|+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|
T Consensus 154 --------------------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 154 --------------------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp --------------------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTT
T ss_pred --------------------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHh
Confidence 35677 7888888887444444444 788888888884 886667778
Q ss_pred ccc-cCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 043317 562 SNL-QMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 599 (700)
Q Consensus 562 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 599 (700)
+++ ++|+.||+++|++++..+. .++.|+.|+++++
T Consensus 201 ~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred hccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 888 8888888888888854333 5677788888765
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.1e-21 Score=199.21 Aligned_cols=126 Identities=21% Similarity=0.203 Sum_probs=60.6
Q ss_pred cCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEE
Q 043317 303 LNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHL 382 (700)
Q Consensus 303 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 382 (700)
..+++|++|++++|.++. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ....+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 345566666666666653 23 35556666666666666653322 555555555555555554431 11144444555
Q ss_pred EccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCcc
Q 043317 383 YVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437 (700)
Q Consensus 383 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 437 (700)
++++|++++. +. +..+++|++|++++|++++..+ +..+++|+.|++++|++
T Consensus 113 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 113 DLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 5554444432 21 4444444444444444442221 33444444444444443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.8e-21 Score=197.78 Aligned_cols=104 Identities=17% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEE
Q 043317 328 NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLD 407 (700)
Q Consensus 328 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 407 (700)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ ...+++|++|++++|++++. + .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 34455555555555542 23 34555555555555555555444 22455555555555555432 2 355555555555
Q ss_pred CcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317 408 LRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 408 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
+++|++++. + .+..+++|+.|++++|+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccC
Confidence 555555532 2 2555555555555555554
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.3e-20 Score=185.68 Aligned_cols=182 Identities=21% Similarity=0.153 Sum_probs=147.4
Q ss_pred CcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEc
Q 043317 258 ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLM 337 (700)
Q Consensus 258 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 337 (700)
...++++++++.+.... ..+. ++++.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34566777777665433 2222 57788888888888777777888888888888888888777777888888888888
Q ss_pred ccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccccc
Q 043317 338 SNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ 416 (700)
Q Consensus 338 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 416 (700)
++|.+++..+..+..+++|++|++++|.+++.++..+ .+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 8888887777778888888888888888888877776 788999999999999877777888899999999999999977
Q ss_pred CChhhhccCCCCEEecCCCccCCCCC
Q 043317 417 IPDQICQLRRLGMMDLSHNRFNGSIP 442 (700)
Q Consensus 417 ~~~~~~~l~~L~~L~Ls~N~l~~~~p 442 (700)
.+..+..+++|+.|++++|++.+...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 77788899999999999999986533
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.3e-20 Score=195.33 Aligned_cols=170 Identities=15% Similarity=0.032 Sum_probs=91.9
Q ss_pred cEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcE-EEcc
Q 043317 261 WFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEI-LLMS 338 (700)
Q Consensus 261 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L~ 338 (700)
++++.++++++.. |..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4556666666543 2222 2456666666666665545556666666666666666654443 34556665544 4445
Q ss_pred cCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccC-CcCccCcchhhhCC-CCccEEECcCCcccc
Q 043317 339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQK-NALSGPIPDMLFRS-SKLMTLDLRGNNLEG 415 (700)
Q Consensus 339 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~-n~l~~~~~~~~~~~-~~L~~L~l~~N~l~~ 415 (700)
+|++++..|..|..+++|++|++++|.++...+..+ ...++..+++.+ +++....+..|..+ ..++.|++++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 566665555666666666666666666665555444 445555566544 34443333334433 245556666666553
Q ss_pred cCChhhhccCCCCEEecCC
Q 043317 416 QIPDQICQLRRLGMMDLSH 434 (700)
Q Consensus 416 ~~~~~~~~l~~L~~L~Ls~ 434 (700)
++.......+|+.+++++
T Consensus 169 -i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp -ECTTSSTTEEEEEEECTT
T ss_pred -CChhhccccchhHHhhcc
Confidence 222222334555555553
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.1e-20 Score=193.82 Aligned_cols=240 Identities=16% Similarity=0.128 Sum_probs=180.6
Q ss_pred cEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcE-EEc
Q 043317 187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWF-LDL 265 (700)
Q Consensus 187 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~-L~L 265 (700)
++++.++++++ ++|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++...+.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46677777776 778765 3579999999999996666788999999999999999877777666677877765 566
Q ss_pred CCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEccc-CcCCCCcchhhcCCC-CCcEEEcccCcCc
Q 043317 266 SDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISH-NFLSGHIPHWMGNFS-NLEILLMSNNCLE 343 (700)
Q Consensus 266 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 343 (700)
+.|++....+..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..|..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77888888888888899999999999998877666666777788888865 466655555666654 5888999999988
Q ss_pred ccchhhccCCCCCCEEEccC-ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhh
Q 043317 344 GNIPVQLLNHRTLKLLSVSE-NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI 421 (700)
Q Consensus 344 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~ 421 (700)
. ++.......+|+.+++++ |.++.+++..| .+++|++|++++|+++...+.. +.+|+.|.+.++.--..+| .+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 4 555455566788888874 67777777776 7888999999999888443333 4566666665554333566 47
Q ss_pred hccCCCCEEecCCC
Q 043317 422 CQLRRLGMMDLSHN 435 (700)
Q Consensus 422 ~~l~~L~~L~Ls~N 435 (700)
..+++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 78888888888754
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.3e-20 Score=174.36 Aligned_cols=131 Identities=22% Similarity=0.222 Sum_probs=59.4
Q ss_pred CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEcc
Q 043317 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQ 385 (700)
Q Consensus 307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~ 385 (700)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++.++..+ .+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555554444444445555555555555543333334444444444444444444433333 34444444444
Q ss_pred CCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCcc
Q 043317 386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437 (700)
Q Consensus 386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 437 (700)
+|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 4444433333344444444444444444433333344444444444444433
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=6.5e-20 Score=175.08 Aligned_cols=174 Identities=19% Similarity=0.200 Sum_probs=132.7
Q ss_pred CEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCc
Q 043317 357 KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436 (700)
Q Consensus 357 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 436 (700)
+.++++++.++..+... .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45566666665554333 3577888888888876666667778888888888888886666667788888888888888
Q ss_pred cCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccc
Q 043317 437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL 516 (700)
Q Consensus 437 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 516 (700)
+++..+..+.. +
T Consensus 88 l~~~~~~~~~~--------------------------------------------------------------------l 99 (208)
T 2o6s_A 88 LQSLPNGVFDK--------------------------------------------------------------------L 99 (208)
T ss_dssp CCCCCTTTTTT--------------------------------------------------------------------C
T ss_pred CCccCHhHhcC--------------------------------------------------------------------c
Confidence 87544433332 3
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 596 (700)
++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++.+. ++.|++|++
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~ 172 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSE 172 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHH
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHH
Confidence 6778888888888877777788889999999999999877777788899999999999987754 456888999
Q ss_pred cCCcCcccCCC
Q 043317 597 SYNNLSGLIPD 607 (700)
Q Consensus 597 s~N~l~~~~p~ 607 (700)
+.|+++|.+|.
T Consensus 173 ~~n~~~g~ip~ 183 (208)
T 2o6s_A 173 WINKHSGVVRN 183 (208)
T ss_dssp HHHHCTTTBBC
T ss_pred HHHhCCceeec
Confidence 99999998885
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.9e-20 Score=200.03 Aligned_cols=190 Identities=24% Similarity=0.353 Sum_probs=139.6
Q ss_pred CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEcc
Q 043317 306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQ 385 (700)
Q Consensus 306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 385 (700)
.+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|.+++++. + ..+|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~--l-~~~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE--L-PASLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC--C-CTTCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch--h-hcCCCEEECC
Confidence 388889999988886 55544 367888899888888 566 446788888888888887444 3 1288888888
Q ss_pred CCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccC
Q 043317 386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSI 465 (700)
Q Consensus 386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 465 (700)
+|++++ +|. .+++|++|++++|++++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------- 179 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------- 179 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------------------
Confidence 888876 555 57788888888888885 554 56788888888888774 443 21
Q ss_pred CCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC--
Q 043317 466 FPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI-- 543 (700)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-- 543 (700)
++|+.|+|++|.|+ .+|. +.. +|
T Consensus 180 ---------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 180 ---------------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHH 204 (571)
T ss_dssp ---------------------------------------------------TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred ---------------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence 45677888888888 5555 554 66
Q ss_pred -----cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCC
Q 043317 544 -----RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNF 590 (700)
Q Consensus 544 -----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 590 (700)
+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 205 ~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ---CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888888888 57777777888888888888888888877766543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=173.52 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=121.2
Q ss_pred cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317 380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458 (700)
Q Consensus 380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 458 (700)
+++++++|.++ .+|..+. ..+++|++++|++++..+ ..|..+++|+.|++++|++++..+..|.+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46677777766 3554432 356777777777776644 45677888888888888877554444433
Q ss_pred cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538 (700)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 538 (700)
+++|+.|+|++|.+++..|..|+
T Consensus 80 ---------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 80 ---------------------------------------------------------ASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGT
T ss_pred ---------------------------------------------------------CCCCCEEECCCCccCccCHhHhc
Confidence 36677888888888877777888
Q ss_pred CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317 539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606 (700)
Q Consensus 539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 606 (700)
.+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 89999999999999998888889999999999999999998889999999999999999999986654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.9e-19 Score=196.04 Aligned_cols=197 Identities=26% Similarity=0.319 Sum_probs=158.2
Q ss_pred CCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317 282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 361 (700)
.+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 379999999999986 565553 78999999999998 566 457899999999999986 666 654 8999999
Q ss_pred cCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCC
Q 043317 362 SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSI 441 (700)
Q Consensus 362 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 441 (700)
++|.+++.+. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+++ .+
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 9999998555 57899999999999986 565 57899999999999986 666 65 89999999999998 55
Q ss_pred CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317 442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG 521 (700)
Q Consensus 442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 521 (700)
|. +.. .+. .....|+.
T Consensus 196 p~-~~~--~L~-------------------------------------------------------------~~~~~L~~ 211 (571)
T 3cvr_A 196 PA-VPV--RNH-------------------------------------------------------------HSEETEIF 211 (571)
T ss_dssp CC-CC-----------------------------------------------------------------------CCEE
T ss_pred hh-HHH--hhh-------------------------------------------------------------cccccceE
Confidence 54 322 000 11245688
Q ss_pred EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccC
Q 043317 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM 566 (700)
Q Consensus 522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 566 (700)
|+|++|.|+ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 999999999 67888888999999999999999999998888765
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.5e-19 Score=172.26 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=113.3
Q ss_pred cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhcccc
Q 043317 380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF 459 (700)
Q Consensus 380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 459 (700)
+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|+.|++++|++++..|..|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 45666666665 3444332 56777777777777666666777777777777777776555554433
Q ss_pred CCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccC
Q 043317 460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD 539 (700)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 539 (700)
+++|+.|+|++|.+++..+..|..
T Consensus 79 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 79 --------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp --------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CcCCCEEECCCCcCCccCHhHccC
Confidence 256677777777777666666788
Q ss_pred cCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCccc
Q 043317 540 LQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604 (700)
Q Consensus 540 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 604 (700)
+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+.
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 88888888888888888888888888888888888888888877888888888888888888753
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.1e-19 Score=186.99 Aligned_cols=86 Identities=23% Similarity=0.192 Sum_probs=48.9
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCccc---ccccCCCEEeCCCCcCcccCcccccCCCC--C
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSF---SNLQMIESLDLSNNRLSGQIPAQLIELNF--L 591 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L 591 (700)
++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|++++..+..+..++. +
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 445555666666655555566666666666666666664333333 44666666666666666555555555554 3
Q ss_pred CeEeccCCcCc
Q 043317 592 SNFNVSYNNLS 602 (700)
Q Consensus 592 ~~L~ls~N~l~ 602 (700)
+.|++++|++.
T Consensus 192 ~~l~l~~N~~~ 202 (361)
T 2xot_A 192 NGLYLHNNPLE 202 (361)
T ss_dssp TTEECCSSCEE
T ss_pred ceEEecCCCcc
Confidence 55666666665
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.2e-18 Score=168.54 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=127.6
Q ss_pred CcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317 379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458 (700)
Q Consensus 379 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 458 (700)
.+.++.++++++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++.+..+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 556777777776 4555443 78888888888888777888888888888888888886443333333
Q ss_pred cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538 (700)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 538 (700)
+++|+.|+|++|++++..+..|.
T Consensus 87 ---------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 87 ---------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred ---------------------------------------------------------CCCcCEEECCCCcCCccChhHhC
Confidence 36788889999999877777888
Q ss_pred CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317 539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607 (700)
Q Consensus 539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 607 (700)
.+++|++|+|++|+++ .+|..+.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+.
T Consensus 110 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 9999999999999999 7888899999999999999999988888899999999999999999876653
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=174.39 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=45.0
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 596 (700)
++|+.|++++|.+++. ..++.+++|++|++++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|++
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL 207 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 4455555555555533 345555666666666666654433 55566666666666666543 2 2556666666666
Q ss_pred cCCcCcc
Q 043317 597 SYNNLSG 603 (700)
Q Consensus 597 s~N~l~~ 603 (700)
++|+++.
T Consensus 208 ~~n~i~~ 214 (291)
T 1h6t_A 208 FSQECLN 214 (291)
T ss_dssp EEEEEEC
T ss_pred cCCcccC
Confidence 6666553
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=166.24 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=126.3
Q ss_pred CEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCC
Q 043317 357 KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN 435 (700)
Q Consensus 357 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 435 (700)
+.+++++|.++.++... .+.+++|++++|++++..+ ..|..+++|++|++++|++++..+.+|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 46677777766654433 3456788888888876544 45778888999999999988777778888999999999999
Q ss_pred ccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCcc
Q 043317 436 RFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN 515 (700)
Q Consensus 436 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 515 (700)
++++..|..|.+
T Consensus 92 ~l~~~~~~~~~~-------------------------------------------------------------------- 103 (220)
T 2v70_A 92 RLENVQHKMFKG-------------------------------------------------------------------- 103 (220)
T ss_dssp CCCCCCGGGGTT--------------------------------------------------------------------
T ss_pred ccCccCHhHhcC--------------------------------------------------------------------
Confidence 988665554543
Q ss_pred ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 3678889999999998889999999999999999999998889999999999999999999987654
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.6e-18 Score=164.13 Aligned_cols=154 Identities=22% Similarity=0.258 Sum_probs=125.8
Q ss_pred CEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCc
Q 043317 357 KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436 (700)
Q Consensus 357 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 436 (700)
+.++++++.++.++... .+++++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45666677666655433 2578888888888887666778888889999999999988888889999999999999998
Q ss_pred cCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccc
Q 043317 437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL 516 (700)
Q Consensus 437 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 516 (700)
+++..+..|.+ +
T Consensus 92 l~~l~~~~f~~--------------------------------------------------------------------l 103 (220)
T 2v9t_B 92 ITELPKSLFEG--------------------------------------------------------------------L 103 (220)
T ss_dssp CCCCCTTTTTT--------------------------------------------------------------------C
T ss_pred CCccCHhHccC--------------------------------------------------------------------C
Confidence 87444333333 3
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 580 (700)
++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6788899999999988899999999999999999999988888899999999999999998753
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2e-18 Score=190.22 Aligned_cols=146 Identities=20% Similarity=0.227 Sum_probs=95.9
Q ss_pred CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317 284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE 363 (700)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 363 (700)
+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445555555554332 45667788888888877743 3 47777888888888888775444 67777777777777
Q ss_pred ccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCC
Q 043317 364 NYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS 440 (700)
Q Consensus 364 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 440 (700)
|.+++.. ....+++|++|++++|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+.
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 7776543 222667777777777777642 3466667777777777777643 4566667777777777766543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.8e-18 Score=170.25 Aligned_cols=188 Identities=21% Similarity=0.242 Sum_probs=99.2
Q ss_pred CcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317 211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290 (700)
Q Consensus 211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 290 (700)
+..+.+..+.+.... .+..+++|+.|++++|.+.+. +. +..+++|++|++++|++.+..+ +..+++|+.|+++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-hh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 333445555554322 234566777777777776543 22 3446666666666666655443 5566666666666
Q ss_pred cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC
Q 043317 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370 (700)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 370 (700)
+|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 6666542 2255556666666666665542 2355555566666666555532 33445555555555555554443
Q ss_pred CCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccc
Q 043317 371 TSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE 414 (700)
Q Consensus 371 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 414 (700)
+ ...+++|++|++++|++++ ++ .+..+++|+.|++++|+++
T Consensus 173 ~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred h-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 3 2244455555555555443 22 2444444555555544444
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=9.5e-18 Score=184.88 Aligned_cols=169 Identities=23% Similarity=0.335 Sum_probs=141.0
Q ss_pred CcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEc
Q 043317 258 ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLM 337 (700)
Q Consensus 258 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 337 (700)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345566677777665443 35678899999999999854 3 58889999999999999997655 889999999999
Q ss_pred ccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccC
Q 043317 338 SNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI 417 (700)
Q Consensus 338 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~ 417 (700)
++|.+.+ ++ .+..+++|+.|++++|.+++. +....+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+..
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 9999985 33 688999999999999999875 3333899999999999999865 67889999999999999999766
Q ss_pred ChhhhccCCCCEEecCCCccCC
Q 043317 418 PDQICQLRRLGMMDLSHNRFNG 439 (700)
Q Consensus 418 ~~~~~~l~~L~~L~Ls~N~l~~ 439 (700)
| +..+++|+.|+|++|++++
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCB
T ss_pred h--hccCCCCCEEECcCCCCCC
Confidence 5 8899999999999999874
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=9.6e-21 Score=207.57 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=43.4
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcccc-CcccccccCCCEEeCCCCcCcccCccc---ccCCCCCC
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSI-PRSFSNLQMIESLDLSNNRLSGQIPAQ---LIELNFLS 592 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~ 592 (700)
++|+.|+|++|.+++ +| .++.+++|++|+|++|+|++.+ |..|+++++|+.|+|++|++++.+|.. +..+++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 455556666666654 34 5566666666666666666554 566666666666666666666544421 22255555
Q ss_pred eEe
Q 043317 593 NFN 595 (700)
Q Consensus 593 ~L~ 595 (700)
.||
T Consensus 564 ~L~ 566 (567)
T 1dce_A 564 SIL 566 (567)
T ss_dssp EEE
T ss_pred ccC
Confidence 554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.6e-17 Score=159.17 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=129.2
Q ss_pred CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317 284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE 363 (700)
Q Consensus 284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 363 (700)
.+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777776 4444433 7888888888888888788888888899999999888766666778888999999999
Q ss_pred ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317 364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442 (700)
Q Consensus 364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 442 (700)
|.+++..+..+ .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99988888777 7899999999999998 778888999999999999999997777788999999999999999986543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=173.36 Aligned_cols=157 Identities=24% Similarity=0.234 Sum_probs=103.2
Q ss_pred CCcEEEcccCccccccccccc-CCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317 283 QMEFLYLENNKFSGKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361 (700)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 361 (700)
.++.|++++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355556666665555555554 5666666666666666555555666666666666666666555555666666666777
Q ss_pred cCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhh---hCCCCccEEECcCCcccccCChhhhccCC--CCEEecCCC
Q 043317 362 SENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDML---FRSSKLMTLDLRGNNLEGQIPDQICQLRR--LGMMDLSHN 435 (700)
Q Consensus 362 ~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~Ls~N 435 (700)
++|.+++..+..+ .+++|++|++++|++++..+..+ ..+++|+.|++++|++++..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 7776666666655 66777777777777765444444 45788888888888888666667777776 478888888
Q ss_pred ccCC
Q 043317 436 RFNG 439 (700)
Q Consensus 436 ~l~~ 439 (700)
++..
T Consensus 200 ~~~C 203 (361)
T 2xot_A 200 PLEC 203 (361)
T ss_dssp CEEC
T ss_pred CccC
Confidence 8864
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.7e-18 Score=160.27 Aligned_cols=91 Identities=27% Similarity=0.406 Sum_probs=75.9
Q ss_pred ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN 595 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 595 (700)
++.|+.|+|++|.+++..|..|..+++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 36677788888888877788888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCCcCcccCC
Q 043317 596 VSYNNLSGLIP 606 (700)
Q Consensus 596 ls~N~l~~~~p 606 (700)
+++|++++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 88888887655
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=3e-20 Score=203.58 Aligned_cols=203 Identities=20% Similarity=0.169 Sum_probs=143.4
Q ss_pred CCCCCcEEEcccCcccccccccccCCCCCcEEEcccCc-------------CCCCcchhhcCCCCCcEEE-cccCcCccc
Q 043317 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNF-------------LSGHIPHWMGNFSNLEILL-MSNNCLEGN 345 (700)
Q Consensus 280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~ 345 (700)
.+++|+.|++++|+++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3455556666666655 445555666666666655443 2334444555555555555 4443322
Q ss_pred chhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC
Q 043317 346 IPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR 425 (700)
Q Consensus 346 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~ 425 (700)
.|+.+.+++|.++...+ ..|+.|++++|++++ +|. +..+++|+.|++++|+++ .+|..++.++
T Consensus 424 ---------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred ---------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 12223344455544332 358899999999985 666 888999999999999999 7888999999
Q ss_pred CCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeec
Q 043317 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTK 505 (700)
Q Consensus 426 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 505 (700)
+|+.|++++|++++ +| .+..
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~---------------------------------------------------------- 506 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVAN---------------------------------------------------------- 506 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTT----------------------------------------------------------
T ss_pred CCCEEECCCCCCCC-Cc-ccCC----------------------------------------------------------
Confidence 99999999999985 44 3333
Q ss_pred cccccccCccccccceEECCCCcCcccC-CccccCcCCCcEEeCCCccCccccCc---ccccccCCCEEeC
Q 043317 506 NRYELYNGSNLNYMVGLDLSCNELTGNV-PSEIGDLQKIRGLNLSHNCLSGSIPR---SFSNLQMIESLDL 572 (700)
Q Consensus 506 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L 572 (700)
+++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+++.+|. .+..+++|+.||+
T Consensus 507 ----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 ----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 478899999999999887 99999999999999999999976653 2445889999875
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=8.7e-18 Score=158.64 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=56.0
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCcc-CccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNC-LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN 595 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 595 (700)
++|+.|++++|.+++..|..++.+++|++|++++|+ ++ .+| .++++++|+.|++++|++++. + .+..+++|++|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEE
Confidence 556666666776666666667777777777777776 54 344 577777778888887777753 3 577777788888
Q ss_pred ccCCcCc
Q 043317 596 VSYNNLS 602 (700)
Q Consensus 596 ls~N~l~ 602 (700)
+++|++.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 8887765
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.2e-17 Score=163.21 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=55.3
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 596 (700)
+.|+.|++++|++++. + .++.+++|++|++++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 3456666777766643 2 466777777777777777753 3 567777777777777777765 55677777777777
Q ss_pred cCCcCccc
Q 043317 597 SYNNLSGL 604 (700)
Q Consensus 597 s~N~l~~~ 604 (700)
++|++++.
T Consensus 180 ~~N~~~~~ 187 (263)
T 1xeu_A 180 TGQKCVNE 187 (263)
T ss_dssp EEEEEECC
T ss_pred CCCcccCC
Confidence 77777654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.3e-17 Score=153.76 Aligned_cols=132 Identities=24% Similarity=0.318 Sum_probs=102.7
Q ss_pred cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317 380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458 (700)
Q Consensus 380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 458 (700)
+++++++|+++ .+|..+. .++++|++++|++++..+. .+..+++|++|++++|++++..|..|.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56777777775 4555443 3778888888888765554 4778888888888888887666665544
Q ss_pred cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538 (700)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 538 (700)
+++|+.|+|++|++++..|..|.
T Consensus 77 ---------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~ 99 (192)
T 1w8a_A 77 ---------------------------------------------------------ASHIQELQLGENKIKEISNKMFL 99 (192)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSCCCCEECSSSST
T ss_pred ---------------------------------------------------------cccCCEEECCCCcCCccCHHHhc
Confidence 36677888888888888888888
Q ss_pred CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
.+++|++|+|++|++++.+|..|+.+++|+.|+|++|++++..+
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 89999999999999998888899999999999999999987655
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=4.4e-18 Score=192.46 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=87.4
Q ss_pred CCCcEEEcccCcccccccccccCCCCC-----cEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCC
Q 043317 282 TQMEFLYLENNKFSGKIEEGLLNSTKL-----YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTL 356 (700)
Q Consensus 282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 356 (700)
+.++.|++.+|.+... +..+.....| ..++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5577888888887753 3322222222 22223333333 44666777788888888888877 566666677888
Q ss_pred CEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCC
Q 043317 357 KLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN 435 (700)
Q Consensus 357 ~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 435 (700)
++|+|++|.++.+ |..+ .+++|++|+|++|+++ .+|..+..+++|++|+|++|.|+ .+|..|..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 8888888887743 3434 7778888888888877 66777777788888888888776 56767777888888888888
Q ss_pred ccCCCCCchhhhh
Q 043317 436 RFNGSIPSCFTNM 448 (700)
Q Consensus 436 ~l~~~~p~~~~~l 448 (700)
++++.+|..+..+
T Consensus 327 ~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 327 PLEKQFLKILTEK 339 (727)
T ss_dssp CCCSHHHHHHHHH
T ss_pred ccCCCChHHHhhc
Confidence 8877766666543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=5.6e-18 Score=173.92 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=55.3
Q ss_pred cccceEECCCCcCcccCCccccCcCCCc-EEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIR-GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN 595 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 595 (700)
++|+.|++++| ++...+.+|.++.+|+ .+++.+ +++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 45666666666 6656666777777777 777777 66656667777777777777777777777777777777777765
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2e-17 Score=169.81 Aligned_cols=54 Identities=11% Similarity=0.013 Sum_probs=28.1
Q ss_pred cccc-eEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEe
Q 043317 517 NYMV-GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLD 571 (700)
Q Consensus 517 ~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 571 (700)
++|+ .+++.+ .++...+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus 273 ~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 3444 455554 44444455555555555555555555544445555555555544
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.2e-16 Score=150.74 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=73.1
Q ss_pred CCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEcc
Q 043317 283 QMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVS 362 (700)
Q Consensus 283 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 362 (700)
+|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3444444444443 222 24444444444444443331 1234444555555555555544444445555555555555
Q ss_pred CccCcccCCCcc-CCCCCcEEEccCCc-CccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317 363 ENYLSGSMTSSF-NLSSLKHLYVQKNA-LSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 363 ~n~l~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
+|.+++..+..+ .+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 555544333333 45555555555555 33 333 45566666666666666663 22 5566666777777666654
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.8e-17 Score=162.49 Aligned_cols=150 Identities=26% Similarity=0.358 Sum_probs=84.6
Q ss_pred CCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCE
Q 043317 279 LNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL 358 (700)
Q Consensus 279 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 358 (700)
..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++ ++. +.. ++|+.
T Consensus 38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCE
T ss_pred hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccE
Confidence 344455555555555542 22 34555555556665555554333 5555566666666665553 222 122 56666
Q ss_pred EEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317 359 LSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 359 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
|++++|.+++.. ....+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++.
T Consensus 111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 666666665542 222566666666666666643 2 466666777777777776644 45666777777777777766
Q ss_pred CC
Q 043317 439 GS 440 (700)
Q Consensus 439 ~~ 440 (700)
+.
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.6e-17 Score=187.82 Aligned_cols=183 Identities=19% Similarity=0.162 Sum_probs=114.1
Q ss_pred CcCcEEEcCCcccccccccccCCCCC-----CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCC
Q 043317 258 ISLWFLDLSDNNFYGQFFSKDLNLTQ-----MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332 (700)
Q Consensus 258 ~~L~~L~L~~n~l~~~~~~~~~~l~~-----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 332 (700)
+.++.|++.+|.+...... +..... +..+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5678888888887663222 211111 222333334443 45677888899999999999988 566666789999
Q ss_pred cEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC
Q 043317 333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN 411 (700)
Q Consensus 333 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N 411 (700)
++|+|++|.++ .+|..+..+++|++|+|++|.++.+ |..+ .+++|++|+|++|.++ .+|..|..+++|++|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999998 7888899999999999999999855 4444 8899999999999987 67888999999999999999
Q ss_pred cccccCChhhhccCC-CCEEecCCCccCCCCCchhh
Q 043317 412 NLEGQIPDQICQLRR-LGMMDLSHNRFNGSIPSCFT 446 (700)
Q Consensus 412 ~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~ 446 (700)
++++.+|..+..+.. +..+++++|.+++.+|..+.
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 999888887765432 23478888888877776543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=8.6e-16 Score=143.98 Aligned_cols=88 Identities=25% Similarity=0.281 Sum_probs=76.7
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 596 (700)
++|+.|+|++|.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 56777888888888777788889999999999999999888888999999999999999999877778889999999999
Q ss_pred cCCcCccc
Q 043317 597 SYNNLSGL 604 (700)
Q Consensus 597 s~N~l~~~ 604 (700)
++|++.+.
T Consensus 134 ~~N~~~C~ 141 (193)
T 2wfh_A 134 GANPLYCD 141 (193)
T ss_dssp CSSCEECS
T ss_pred CCCCeecC
Confidence 99999853
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.4e-16 Score=142.87 Aligned_cols=134 Identities=21% Similarity=0.207 Sum_probs=98.2
Q ss_pred CCCccEEECcCCccc-ccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccc
Q 043317 400 SSKLMTLDLRGNNLE-GQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYY 478 (700)
Q Consensus 400 ~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (700)
.++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--------------------------------- 67 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--------------------------------- 67 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC---------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh---------------------------------
Confidence 356777777777776 56666677777777777777777643 111
Q ss_pred ccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcccc-
Q 043317 479 NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSI- 557 (700)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~- 557 (700)
..+++|+.|++++|.+++.+|..+..+++|++|++++|++++..
T Consensus 68 -----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 68 -----------------------------------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp -----------------------------------CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGG
T ss_pred -----------------------------------ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchh
Confidence 12366777888888887667777777888888888888887543
Q ss_pred CcccccccCCCEEeCCCCcCcccCc---ccccCCCCCCeEeccCCcCcc
Q 043317 558 PRSFSNLQMIESLDLSNNRLSGQIP---AQLIELNFLSNFNVSYNNLSG 603 (700)
Q Consensus 558 p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~~ 603 (700)
+..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 2678888888888888888886655 477888888888888888763
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.7e-16 Score=142.11 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=94.2
Q ss_pred CCCCcEEEccCCcCc-cCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhh
Q 043317 376 LSSLKHLYVQKNALS-GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIE 454 (700)
Q Consensus 376 l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~ 454 (700)
.++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 355666666666665 45566666667777777777776644 56667777777777777776555544332
Q ss_pred hccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccC-
Q 043317 455 NVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV- 533 (700)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 533 (700)
+++|+.|++++|.+++..
T Consensus 94 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 94 -------------------------------------------------------------LPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp -------------------------------------------------------------CTTCCEEECBSSSCCSSGG
T ss_pred -------------------------------------------------------------CCCCCEEeccCCccCcchh
Confidence 256677777777777532
Q ss_pred CccccCcCCCcEEeCCCccCccccC---cccccccCCCEEeCCCCcCcccCcc
Q 043317 534 PSEIGDLQKIRGLNLSHNCLSGSIP---RSFSNLQMIESLDLSNNRLSGQIPA 583 (700)
Q Consensus 534 p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~ 583 (700)
+..+..+++|++|++++|.+++..+ ..+..+++|+.||+++|.+.. +|.
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 2677788888888888888886555 478888888888888888873 343
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.6e-15 Score=140.30 Aligned_cols=91 Identities=22% Similarity=0.211 Sum_probs=73.5
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 596 (700)
++|+.|++++|.+++..+..++.+++|++|++++|++++..+..|+++++|+.|++++|++++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 56677777777777666666788888888888888888777777888888888888888888777767788888888899
Q ss_pred cCCcCcccCCC
Q 043317 597 SYNNLSGLIPD 607 (700)
Q Consensus 597 s~N~l~~~~p~ 607 (700)
++|++++.+|.
T Consensus 132 ~~N~~~~~~~~ 142 (177)
T 2o6r_A 132 HTNPWDCSCPR 142 (177)
T ss_dssp CSSCBCCCHHH
T ss_pred cCCCeeccCcc
Confidence 88888876663
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=1e-14 Score=153.55 Aligned_cols=327 Identities=12% Similarity=0.068 Sum_probs=186.9
Q ss_pred ccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCC
Q 043317 32 NCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPT 111 (700)
Q Consensus 32 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 111 (700)
.+|.++++|+.+.+.. .++.+...+|.+|++|+.+++..+ ++ .++..+|.++++|+.+.+..+ ...+...+|.++
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--eeeecceeeecc
Confidence 4566666666666653 355455566777777777776544 33 344456666666666555432 234444455555
Q ss_pred CcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEe
Q 043317 112 FQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD 190 (700)
Q Consensus 112 ~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 190 (700)
..++..... ....+. ..+..+.+|+.+.+..+- . .++...|.++.+|+.+.+..+ ++......+..+..|+.+.
T Consensus 140 ~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 140 DFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred cccccccCc--cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 333222211 112222 334566667777665442 2 455555666667776666554 3434455566666666666
Q ss_pred CCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccc
Q 043317 191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270 (700)
Q Consensus 191 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 270 (700)
+..+.. .+....+. ..+|+.+.+... ++......+.++..++.+.+..+... +....+..+..++.+....+.+
T Consensus 215 ~~~~~~--~i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 215 FPNSLY--YLGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCTTCC--EECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEE
T ss_pred cCCCce--Eeehhhcc-cCCCceEEECCC-ceecccccccccccceeEEcCCCcce--eeccccccccccceeccCceee
Confidence 655432 22222333 356777766543 33344455666777777777655331 2223345567777776665543
Q ss_pred ccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhc
Q 043317 271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350 (700)
Q Consensus 271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 350 (700)
....+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|
T Consensus 289 ---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 289 ---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp ---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred ---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 2345566777777777654 55455666777778888877644 55455667777888888887765 555556677
Q ss_pred cCCCCCCEEEccCccCcccCCCcc-CCCCCcEE
Q 043317 351 LNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHL 382 (700)
Q Consensus 351 ~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L 382 (700)
.+|.+|+.+++..+ ++.. ...| ++++|+.+
T Consensus 363 ~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 363 QGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred hCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 78888888887654 2222 2334 66666654
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=9.7e-15 Score=152.85 Aligned_cols=248 Identities=13% Similarity=0.140 Sum_probs=151.7
Q ss_pred hhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcC
Q 043317 81 SSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN 159 (700)
Q Consensus 81 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 159 (700)
.+|.++ +|+.+++..+ ...+...+|.++ +|+.+.+.. .+..++ ..+..|.+|+.++++.|+++ .++...|. +
T Consensus 130 ~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~ 202 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y 202 (401)
T ss_dssp TTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T
T ss_pred hhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e
Confidence 344443 3444444322 333444444442 344444443 333333 22334445555555555544 44444442 3
Q ss_pred CCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEE
Q 043317 160 TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILH 239 (700)
Q Consensus 160 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 239 (700)
.+|+.+.+..+ ++.....+|..+.+|+.+++..+ +. .++...|.. .+|+.+.+. +.++.....+|.++++|+.++
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence 45555555422 44344445555555555555543 22 455555553 577777774 345555667778888888888
Q ss_pred ccCccCC----CCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEccc
Q 043317 240 LSKNNFS----EDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISH 315 (700)
Q Consensus 240 L~~n~l~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 315 (700)
+.+|.+. ..++...+.+|++|+.+++. +.+......+|.++++|+.+.+..+ ++.....+|.++ +|+.+++++
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 8777654 12445556778889999888 4577777788888999999999655 666777788888 999999999
Q ss_pred CcCCCCcchhhcCCC-CCcEEEcccCcCc
Q 043317 316 NFLSGHIPHWMGNFS-NLEILLMSNNCLE 343 (700)
Q Consensus 316 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 343 (700)
|.+....+..|.+++ +++.|.+..+.+.
T Consensus 355 n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 355 TTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCcccccccccCCCCCccEEEeCHHHHH
Confidence 988766677788774 7889998877654
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=1.7e-14 Score=150.95 Aligned_cols=248 Identities=13% Similarity=0.122 Sum_probs=142.6
Q ss_pred ccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCC
Q 043317 275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHR 354 (700)
Q Consensus 275 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 354 (700)
..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++...+.+|.+|++|+.+++.+|.++......|. +.
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3344443 4555555443 443444444442 466666554 34434445566666666666666666533333333 45
Q ss_pred CCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecC
Q 043317 355 TLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS 433 (700)
Q Consensus 355 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 433 (700)
+|+.+.+..+ ++.+....| ++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.++.....+|.+|++|+.+++.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence 6666666533 555555555 5666666666654 33333444444 56777777 344554556667777777777776
Q ss_pred CCccCC-----CCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc
Q 043317 434 HNRFNG-----SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY 508 (700)
Q Consensus 434 ~N~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 508 (700)
+|.+.. ..+.+|
T Consensus 280 ~~~~~~~~~~~I~~~aF--------------------------------------------------------------- 296 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCL--------------------------------------------------------------- 296 (401)
T ss_dssp SSCCCCCTTCEECTTTT---------------------------------------------------------------
T ss_pred CccccCCcccEECHHHh---------------------------------------------------------------
Confidence 665431 011111
Q ss_pred ccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC
Q 043317 509 ELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL 588 (700)
Q Consensus 509 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 588 (700)
..+++|+.+++. +.++.....+|.++.+|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|.++
T Consensus 297 -----~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 297 -----EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp -----TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred -----hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 224566667776 3466566677777777777777544 665666777777 78888887777776666677766
Q ss_pred C-CCCeEeccCCcCc
Q 043317 589 N-FLSNFNVSYNNLS 602 (700)
Q Consensus 589 ~-~L~~L~ls~N~l~ 602 (700)
+ .++.+.+..+.+.
T Consensus 369 ~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 369 PDDITVIRVPAESVE 383 (401)
T ss_dssp CTTCCEEEECGGGHH
T ss_pred CCCccEEEeCHHHHH
Confidence 4 5667766665543
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=6.4e-16 Score=138.60 Aligned_cols=81 Identities=23% Similarity=0.237 Sum_probs=55.0
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccc-cCcccccccCCCEEeCCCCcCcccCc---ccccCCCCCC
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGS-IPRSFSNLQMIESLDLSNNRLSGQIP---AQLIELNFLS 592 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~ 592 (700)
+.|+.|++++|.+++.+|..++.+++|++|++++|++++. .+..++++++|+.|++++|++++..+ ..+..+++|+
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 5566666666666655666666677777777777777653 33667777777777777777776655 4667777777
Q ss_pred eEecc
Q 043317 593 NFNVS 597 (700)
Q Consensus 593 ~L~ls 597 (700)
+||++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 77765
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=6e-15 Score=138.23 Aligned_cols=129 Identities=25% Similarity=0.379 Sum_probs=103.2
Q ss_pred cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhcccc
Q 043317 380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF 459 (700)
Q Consensus 380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 459 (700)
+.+++++|+++ .+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 46777777776 4555432 57888888888887 56778888888888888888887655555543
Q ss_pred CCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccC
Q 043317 460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD 539 (700)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 539 (700)
++.|+.|+|++|.+++..|..|..
T Consensus 77 --------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 77 --------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDG 100 (193)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTT
T ss_pred --------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCC
Confidence 367888889999998888888999
Q ss_pred cCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317 540 LQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580 (700)
Q Consensus 540 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 580 (700)
+++|+.|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999999999999977777899999999999999998753
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=9e-15 Score=135.30 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=102.4
Q ss_pred CcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317 379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458 (700)
Q Consensus 379 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~ 458 (700)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 456777777776 344333 357888888888887666666778888888888888887544433332
Q ss_pred cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538 (700)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 538 (700)
+++|+.|++++|.+++..+..+.
T Consensus 75 ---------------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~ 97 (177)
T 2o6r_A 75 ---------------------------------------------------------LTKLTILYLHENKLQSLPNGVFD 97 (177)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred ---------------------------------------------------------CCccCEEECCCCCccccCHHHhh
Confidence 36778888888888877777788
Q ss_pred CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
.+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999999999999997777778899999999999999987765
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=4.2e-14 Score=148.86 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=239.0
Q ss_pred cCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcC
Q 043317 49 QLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128 (700)
Q Consensus 49 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p 128 (700)
.++.+...+|.+|++|+.+.+..+ ++ .++..+|.++++|+.+++..+ ...+...+|.++.+|+.+.+..+ +..+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeec
Confidence 355566778999999999999754 65 566678999999999999743 55677778999999988777644 44444
Q ss_pred hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhc
Q 043317 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTIL 208 (700)
Q Consensus 129 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 208 (700)
...+....+....+... .. .+....|.++++|+.+.+.++. .......+..+.+|+.+++..+ +. .++...+..+
T Consensus 133 ~~aF~~~~~~~~~~~~~-~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~ 207 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG-VT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC 207 (394)
T ss_dssp TTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred ceeeecccccccccCcc-cc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence 43333233444433322 22 4555667789999999997653 3455667888899999998776 33 5666666667
Q ss_pred cCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEE
Q 043317 209 KKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288 (700)
Q Consensus 209 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 288 (700)
..|+.+.+..+... +........+|+.+.+... ++. +....+.++..++.+.+..+.. ......+..+..++.+.
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~-i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTE-LGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCE-ECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEE
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCC-cee-cccccccccccceeEEcCCCcc-eeeccccccccccceec
Confidence 88888887765432 2334445678888888653 222 2333446788999999887643 45556778888888888
Q ss_pred cccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc
Q 043317 289 LENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG 368 (700)
Q Consensus 289 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 368 (700)
...+.+ ....+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++.
T Consensus 283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp ECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred cCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 776543 3456778899999999765 55456678999999999999754 66566778999999999999876 777
Q ss_pred cCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEE
Q 043317 369 SMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL 406 (700)
Q Consensus 369 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 406 (700)
+....| +|++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 357 I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 777788 8899999999765 32 345678888888765
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.2e-15 Score=134.05 Aligned_cols=126 Identities=22% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCCcEEEcccCcCC-CCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEE
Q 043317 306 TKLYQLDISHNFLS-GHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLY 383 (700)
Q Consensus 306 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~ 383 (700)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ .+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34445555555444 34444444455555555555555433 344455555555555555554433333 356666666
Q ss_pred ccCCcCccC-cchhhhCCCCccEEECcCCcccccCC---hhhhccCCCCEEecC
Q 043317 384 VQKNALSGP-IPDMLFRSSKLMTLDLRGNNLEGQIP---DQICQLRRLGMMDLS 433 (700)
Q Consensus 384 l~~n~l~~~-~~~~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls 433 (700)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23566667777777777777765544 456677777777765
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.8e-14 Score=133.10 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=62.5
Q ss_pred ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCc--ccccccCCCEEeCCCCcCcccCcc----cccCCC
Q 043317 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPR--SFSNLQMIESLDLSNNRLSGQIPA----QLIELN 589 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~ 589 (700)
++.|+.|++++|.+++..+..++.+++|++|++++|+++ .+|. .++.+++|+.|++++|+++. +|. .+..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence 356677777777777655555577788888888888886 4554 67788888888888888874 454 377788
Q ss_pred CCCeEeccCCcCcc
Q 043317 590 FLSNFNVSYNNLSG 603 (700)
Q Consensus 590 ~L~~L~ls~N~l~~ 603 (700)
+|++||+++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=3.8e-16 Score=147.42 Aligned_cols=134 Identities=21% Similarity=0.241 Sum_probs=92.5
Q ss_pred chhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccc
Q 043317 394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCY 473 (700)
Q Consensus 394 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (700)
|..+..+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-------------------------- 91 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-------------------------- 91 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH--------------------------
T ss_pred hHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc--------------------------
Confidence 3477777788888888887775 55 7777778888888887776 44443332
Q ss_pred cccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccC
Q 043317 474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL 553 (700)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 553 (700)
+++|+.|++++|.+++ +| .++.+++|++|++++|++
T Consensus 92 ------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 92 ------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKI 127 (198)
T ss_dssp ------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEEC
T ss_pred ------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcC
Confidence 2556777777777775 33 577777788888888877
Q ss_pred ccccC-cccccccCCCEEeCCCCcCcccCccc----------ccCCCCCCeEeccCCcCc
Q 043317 554 SGSIP-RSFSNLQMIESLDLSNNRLSGQIPAQ----------LIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 554 ~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 602 (700)
++..+ ..+..+++|+.|++++|++++.+|.. +..+++|++|| +|+++
T Consensus 128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 74332 46777778888888888877666543 66777777776 55554
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.5e-14 Score=129.76 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=100.8
Q ss_pred ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCc
Q 043317 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLK 380 (700)
Q Consensus 302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~ 380 (700)
+..+.+|++|++++|.++. +|......++|++|++++|.+++. ..+..+++|++|++++|.+++.++..+ .+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4556777777777777773 344333334788888888887754 567778888888888888887776665 788899
Q ss_pred EEEccCCcCccCcch--hhhCCCCccEEECcCCcccccCCh----hhhccCCCCEEecCCCccC
Q 043317 381 HLYVQKNALSGPIPD--MLFRSSKLMTLDLRGNNLEGQIPD----QICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 381 ~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~ 438 (700)
+|++++|+++ .+|. .+..+++|++|++++|+++ .+|. .+..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999886 4565 7888899999999999998 4555 4888999999999998764
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.8e-13 Score=125.31 Aligned_cols=110 Identities=18% Similarity=0.115 Sum_probs=93.2
Q ss_pred EeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccC
Q 043317 502 FVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI 581 (700)
Q Consensus 502 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 581 (700)
.+..+....++....+.++.|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|++++..
T Consensus 15 ~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 15 DCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp ECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence 33444444444445688999999999999988999999999999999999999888888999999999999999999888
Q ss_pred cccccCCCCCCeEeccCCcCcccCCCCCCC
Q 043317 582 PAQLIELNFLSNFNVSYNNLSGLIPDKGQY 611 (700)
Q Consensus 582 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 611 (700)
+..|..+++|++|++++|++++..+...++
T Consensus 95 ~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp TTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred HHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 888999999999999999999776643333
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.2e-15 Score=143.98 Aligned_cols=132 Identities=25% Similarity=0.237 Sum_probs=87.0
Q ss_pred cccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCc
Q 043317 301 GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLK 380 (700)
Q Consensus 301 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~ 380 (700)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++.. ....+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 56666666666666666664 44 5666666777777766666 45555555566777777777766643 222567777
Q ss_pred EEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCCh----------hhhccCCCCEEecCCCccC
Q 043317 381 HLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPD----------QICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 381 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~ 438 (700)
+|++++|++++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|| +|.++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777777764222 3667778888888888887765543 377888888887 66665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.7e-13 Score=123.57 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=91.5
Q ss_pred EEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317 501 EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580 (700)
Q Consensus 501 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 580 (700)
..+..+....++....+.|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|+++++|+.|+|++|+|++.
T Consensus 17 l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 34444555555555568899999999999998899999999999999999999987777789999999999999999987
Q ss_pred CcccccCCCCCCeEeccCCcCcccCCCC
Q 043317 581 IPAQLIELNFLSNFNVSYNNLSGLIPDK 608 (700)
Q Consensus 581 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 608 (700)
.+..|..+++|++|++++|++.+..+..
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CHHHhccccCCCEEEeCCCCcccccccH
Confidence 7777999999999999999998665543
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=1.3e-11 Score=129.82 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=45.5
Q ss_pred cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCC
Q 043317 276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT 355 (700)
Q Consensus 276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 355 (700)
..|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-..+|.+|.+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 344444455555443 2333333444555555555555433 33233445555555555555432 33333445555555
Q ss_pred CCEEEccCccCcccCCCccCCCCCcEEEccCC
Q 043317 356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKN 387 (700)
Q Consensus 356 L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n 387 (700)
|+.+++.++.... ...+.+.+|+.+.+..+
T Consensus 359 L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 359 LNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred CCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 5555555543321 11224455555555444
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=8e-13 Score=120.92 Aligned_cols=66 Identities=26% Similarity=0.281 Sum_probs=55.4
Q ss_pred cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP 582 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 582 (700)
++|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|+++...+
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 567778888888887777778889999999999999998777789999999999999999986543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=2.9e-11 Score=127.07 Aligned_cols=332 Identities=9% Similarity=0.075 Sum_probs=163.1
Q ss_pred cchhccCCC-CCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCc--cccccccCCCCCCCcccEEEeeCCCCCCcChh
Q 043317 54 LSSTITSLT-SLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTN--NMLLVKTENFLPTFQLKVLELANCSLNVVPTF 130 (700)
Q Consensus 54 ~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~ 130 (700)
...+|.++. .|+.+.+..+ ++ .+...+|.++++|+.+.+..+. ....+...+|..+.+|+.+.+..+ ++
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~----- 126 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT----- 126 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-----
T ss_pred CHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-----
Confidence 344555553 3666666543 33 3444556666666666554431 123344444555544444443322 22
Q ss_pred hcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccC
Q 043317 131 LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKK 210 (700)
Q Consensus 131 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 210 (700)
.++...|..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +. .+....+. ..+
T Consensus 127 -------------------~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~ 183 (394)
T 4gt6_A 127 -------------------EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTA 183 (394)
T ss_dssp -------------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCC
T ss_pred -------------------eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccc
Confidence 333333344444444444322 22222334444444555544433 11 33334443 245
Q ss_pred CcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317 211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290 (700)
Q Consensus 211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 290 (700)
|+.+.+..+- ......+|.++..++......+..... ...++........ ....+.....+..+.+.
T Consensus 184 l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip 250 (394)
T 4gt6_A 184 LTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAI-DNVLYEKSANGDY-----------ALIRYPSQREDPAFKIP 250 (394)
T ss_dssp CSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBS-SSCEEEECTTSCE-----------EEEECCTTCCCSEEECC
T ss_pred eeEEEECCcc-cccccchhhhccccceecccccccccc-cceeecccccccc-----------cccccccccccceEEcC
Confidence 6666655432 223444555666666655544333211 1101010000000 00011112233334332
Q ss_pred cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC
Q 043317 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370 (700)
Q Consensus 291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 370 (700)
. .++.....+|..+..|+.+.+..+... ....+|.++++|+.+.+.. .++.....+|.+|.+|+.+++..+ ++.+.
T Consensus 251 ~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 326 (394)
T 4gt6_A 251 N-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQIL 326 (394)
T ss_dssp T-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred C-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEeh
Confidence 2 233344456677777777777655433 4456677777777777753 454455566777778888877654 66666
Q ss_pred CCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCcc
Q 043317 371 TSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437 (700)
Q Consensus 371 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 437 (700)
...| +|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++.... .++..+..|+.+.+..+.+
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6667 7788888888654 554556778888888888888776431 3566677777777766544
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=3.2e-12 Score=117.30 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=89.2
Q ss_pred ceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 043317 520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 599 (700)
Q Consensus 520 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 599 (700)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999997 6777665 89999999999999999999999999999999999999887778899999999999999
Q ss_pred cCcccCCC-CCCCCCcCCCccCCCcCCcC
Q 043317 600 NLSGLIPD-KGQYSTFDESSYRGNLYLCG 627 (700)
Q Consensus 600 ~l~~~~p~-~~~~~~~~~~~~~gn~~lcg 627 (700)
++++..+. ...+..+....+.+|++-|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99977664 34455555556667666554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.2e-13 Score=143.05 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=50.8
Q ss_pred cccceEECCCCcCcc----cCCccccCcCCCcEEeCCCccCccc----cCcccccccCCCEEeCCCCcCccc----Cccc
Q 043317 517 NYMVGLDLSCNELTG----NVPSEIGDLQKIRGLNLSHNCLSGS----IPRSFSNLQMIESLDLSNNRLSGQ----IPAQ 584 (700)
Q Consensus 517 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 584 (700)
+.|+.|+|++|.++. .++..+..+++|++|+|++|.|++. ++..+...++|+.|||++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445666666666653 2233345566677777777766532 244555666777777777777642 3334
Q ss_pred ccCCCCCCeEeccCCcCc
Q 043317 585 LIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 585 l~~l~~L~~L~ls~N~l~ 602 (700)
+...+.|++|||++|+++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 445566777777777765
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.3e-13 Score=143.00 Aligned_cols=187 Identities=20% Similarity=0.148 Sum_probs=88.0
Q ss_pred ccCCcEEEccCCcCCccCCccccC-----CCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccccccc----
Q 043317 208 LKKLLVLDISNNHFEGNIPSSVGE-----MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKD---- 278 (700)
Q Consensus 208 l~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---- 278 (700)
.+.|++|++++|.++......+.. .++|+.|+|++|.+++.....+...+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456777777777776433333322 25777777777777554333443445566666666666654332222
Q ss_pred -CCCCCCcEEEcccCccccc----ccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCC
Q 043317 279 -LNLTQMEFLYLENNKFSGK----IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH 353 (700)
Q Consensus 279 -~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 353 (700)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+++.... .++..+..+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcC
Confidence 1234455555555554431 122223344444444444444321100 112333444
Q ss_pred CCCCEEEccCccCcccCCCcc-----CCCCCcEEEccCCcCccCcchhhhCC---C--CccEEE--CcCCccc
Q 043317 354 RTLKLLSVSENYLSGSMTSSF-----NLSSLKHLYVQKNALSGPIPDMLFRS---S--KLMTLD--LRGNNLE 414 (700)
Q Consensus 354 ~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~---~--~L~~L~--l~~N~l~ 414 (700)
++|+.|++++|.+++.....+ ..++|++|++++|.+++.....+..+ . .|+.+. +..+.+.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 455555555555543221111 24566666666666654433333332 1 155555 5555554
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.1e-11 Score=125.90 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=80.9
Q ss_pred ccccceEECCC-CcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317 516 LNYMVGLDLSC-NELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF 594 (700)
Q Consensus 516 l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 594 (700)
+++|+.|+|++ |.+++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 36789999996 999988889999999999999999999999999999999999999999999988777777777 9999
Q ss_pred eccCCcCccc
Q 043317 595 NVSYNNLSGL 604 (700)
Q Consensus 595 ~ls~N~l~~~ 604 (700)
+|++|++.+.
T Consensus 109 ~l~~N~~~c~ 118 (347)
T 2ifg_A 109 VLSGNPLHCS 118 (347)
T ss_dssp ECCSSCCCCC
T ss_pred EeeCCCccCC
Confidence 9999999854
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3.2e-11 Score=124.54 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=91.7
Q ss_pred eEECCCC-cCcccCCccccCcCCCcEEeCCC-ccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 043317 521 GLDLSCN-ELTGNVPSEIGDLQKIRGLNLSH-NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY 598 (700)
Q Consensus 521 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 598 (700)
.++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|+++++|+.|+|++|+|++.+|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4789998 898 5777 99999999999996 999988889999999999999999999999999999999999999999
Q ss_pred CcCcccCCCCCCCCCcCCCccCCCcCCcCcC
Q 043317 599 NNLSGLIPDKGQYSTFDESSYRGNLYLCGPT 629 (700)
Q Consensus 599 N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~ 629 (700)
|+|++.+|.......+....+.+|+.-|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9999877754333335556677788777653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=1.6e-09 Score=113.14 Aligned_cols=310 Identities=11% Similarity=0.049 Sum_probs=164.2
Q ss_pred cCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcc
Q 043317 35 KYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114 (700)
Q Consensus 35 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 114 (700)
....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .++..+|.++ +|+.+.+.. ....+...+|..+ +|
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECT--TCCEECTTTTTTC-CC
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCc--eeeEeccceeccC-Cc
Confidence 3445566666653 345455556666666666666543 33 3444556655 455555532 2334444455443 56
Q ss_pred cEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCC
Q 043317 115 KVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSN 194 (700)
Q Consensus 115 ~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 194 (700)
+.+.+..+ +..+....+...+++.+.+..+ ++ .+....+..+..++...+..+........... ....
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~ 183 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL---------YNKN 183 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE---------EETT
T ss_pred ccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee---------cccc
Confidence 66665443 3333333333334554444332 22 33333334555555555443322100000000 0000
Q ss_pred cCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccc
Q 043317 195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF 274 (700)
Q Consensus 195 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 274 (700)
. .....+. ....+..+.+.... .......+..+.+|+.+.+..+ +.. +....+.++..|+.+.+..+ ++...
T Consensus 184 ~---~~~~~~~-~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~-i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 184 K---TILESYP-AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTT-LGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp S---SEEEECC-TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCE-ECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred c---ceecccc-ccccccccccccce-eEEeecccccccccceeeeccc-eeE-EccccccCCccceEEEcCCC-ccEeC
Confidence 0 0000011 12334444443322 2233445556667777766543 222 22333455777777777655 55555
Q ss_pred ccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCC
Q 043317 275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHR 354 (700)
Q Consensus 275 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 354 (700)
...+.++.+|+.+.+..+ ++......|.++++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..-..+|.+|.
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 566777778888877543 44455567777888888888877777566677888888888888654 5545566788888
Q ss_pred CCCEEEccCccCcccCCCcc
Q 043317 355 TLKLLSVSENYLSGSMTSSF 374 (700)
Q Consensus 355 ~L~~L~l~~n~l~~~~~~~~ 374 (700)
+|+.+.+..+ ++.+....|
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTT
T ss_pred CCCEEEECCc-cCEEchhHh
Confidence 8888887654 565666666
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=3.5e-09 Score=110.61 Aligned_cols=317 Identities=13% Similarity=0.086 Sum_probs=211.6
Q ss_pred hccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChhhcCCCC
Q 043317 57 TITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYD 136 (700)
Q Consensus 57 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~ 136 (700)
.+....+|+.+.+... ++ .++..+|.++.+|+.+++..+ ...+...+|.++ +|+.+.+.. ++..++...+...+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTD 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCC
T ss_pred ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccCC
Confidence 4556678888888643 44 456678888888888888643 456777788776 677777754 36666666555567
Q ss_pred CCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEc
Q 043317 137 LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216 (700)
Q Consensus 137 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 216 (700)
|+.+.+..+ +. .+....|.+ .+++...+..+ ++......+..+..++...+..+..... ...... .
T Consensus 115 L~~i~lp~~-~~-~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~-~~~~~~-~-------- 180 (379)
T 4h09_A 115 LDDFEFPGA-TT-EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYV-AENYVL-Y-------- 180 (379)
T ss_dssp CSEEECCTT-CC-EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEE-EETTEE-E--------
T ss_pred cccccCCCc-cc-ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceee-ccccee-c--------
Confidence 888888765 33 455555534 35666665443 3334455566666676666654432211 100000 0
Q ss_pred cCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc
Q 043317 217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG 296 (700)
Q Consensus 217 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 296 (700)
+. .......+.....+..+.+..... . +....+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++.
T Consensus 181 --~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~ 253 (379)
T 4h09_A 181 --NK-NKTILESYPAAKTGTEFTIPSTVK-T-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS 253 (379)
T ss_dssp --ET-TSSEEEECCTTCCCSEEECCTTCC-E-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE
T ss_pred --cc-ccceecccccccccccccccccee-E-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE
Confidence 00 011222344555666666544322 1 22233456889999998755 44556677888999999999876 665
Q ss_pred cccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-C
Q 043317 297 KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-N 375 (700)
Q Consensus 297 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~ 375 (700)
.....+.++.+|+.+.+..+ +......+|.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+....| +
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 331 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN 331 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence 66778899999999999765 55455678999999999999999888777888999999999999754 777777888 8
Q ss_pred CCCCcEEEccCCcCccCcchhhhCCCCc
Q 043317 376 LSSLKHLYVQKNALSGPIPDMLFRSSKL 403 (700)
Q Consensus 376 l~~L~~L~l~~n~l~~~~~~~~~~~~~L 403 (700)
|.+|+.+.+..+ ++.+-..+|.++..+
T Consensus 332 C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 332 CKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 999999999765 554555677776433
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.9e-09 Score=110.51 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=53.8
Q ss_pred ccccceEECCCCcCcccCCccc---cCcCCCcEEeCCCccCccc----cCcccccccCCCEEeCCCCcCcccCcccccC-
Q 043317 516 LNYMVGLDLSCNELTGNVPSEI---GDLQKIRGLNLSHNCLSGS----IPRSFSNLQMIESLDLSNNRLSGQIPAQLIE- 587 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 587 (700)
+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4667777777777664332222 2467788888888888753 3444566788888888888887544444443
Q ss_pred CCCCCeEeccCCc
Q 043317 588 LNFLSNFNVSYNN 600 (700)
Q Consensus 588 l~~L~~L~ls~N~ 600 (700)
+ ...++++.|+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 3 4567888776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=6.8e-09 Score=106.36 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=81.0
Q ss_pred cccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhcc--CCCCCCEEEccC--ccCccc------C
Q 043317 301 GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLL--NHRTLKLLSVSE--NYLSGS------M 370 (700)
Q Consensus 301 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~l~~~------~ 370 (700)
.+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......+. .+++|+.|+|+. |...+. .
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445566666666665211 1222 22 56677777776666543333333 567777777642 111111 0
Q ss_pred CCc--cCCCCCcEEEccCCcCccCcchhhh---CCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccC
Q 043317 371 TSS--FNLSSLKHLYVQKNALSGPIPDMLF---RSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 371 ~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
+.. ..+++|++|++++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 111 1368899999988888654444443 467899999999888753 3334456788999999988776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=5.7e-08 Score=89.68 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=22.5
Q ss_pred hhhCCCCccEEECcCC-ccccc----CChhhhccCCCCEEecCCCccC
Q 043317 396 MLFRSSKLMTLDLRGN-NLEGQ----IPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 396 ~~~~~~~L~~L~l~~N-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
.+...+.|++|++++| .+... +...+...++|++|+|++|++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3444556666666665 55422 2233344556666666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=1.1e-07 Score=87.64 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=41.1
Q ss_pred CCCCcEEEccCCcCccC----cchhhhCCCCccEEEC--cCCccccc----CChhhhccCCCCEEecCCCccC
Q 043317 376 LSSLKHLYVQKNALSGP----IPDMLFRSSKLMTLDL--RGNNLEGQ----IPDQICQLRRLGMMDLSHNRFN 438 (700)
Q Consensus 376 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 438 (700)
.++|++|+|++|.+.+. +...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 35566666666666532 3445556677888888 77777643 2344555678888888888774
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=2.4e-07 Score=89.80 Aligned_cols=64 Identities=28% Similarity=0.392 Sum_probs=29.4
Q ss_pred ccccceEECCCCcCcc--cCCccccCcCCCcEEeCCCccCccccCccccccc--CCCEEeCCCCcCcccC
Q 043317 516 LNYMVGLDLSCNELTG--NVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQ--MIESLDLSNNRLSGQI 581 (700)
Q Consensus 516 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~ 581 (700)
++.|+.|+|++|.|++ .+|..++.+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 3445555555555554 2234444455555555555555432 1222222 4555555555554433
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.5e-07 Score=91.31 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=65.8
Q ss_pred EECCCCcCc---ccCCccccCcCCCcEEeCCCccCcc--ccCcccccccCCCEEeCCCCcCcccCcccccCCC--CCCeE
Q 043317 522 LDLSCNELT---GNVPSEIGDLQKIRGLNLSHNCLSG--SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN--FLSNF 594 (700)
Q Consensus 522 L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 594 (700)
++++.|... +..+.....+++|++|+|++|+|++ .+|..++.+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677888433 2222233568899999999999997 4567888999999999999999976 3344444 99999
Q ss_pred eccCCcCcccCCC
Q 043317 595 NVSYNNLSGLIPD 607 (700)
Q Consensus 595 ~ls~N~l~~~~p~ 607 (700)
+|++|++++.+|+
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=2.4e-06 Score=76.53 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=19.8
Q ss_pred CCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCc
Q 043317 38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNN 73 (700)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 73 (700)
.+|++||+|+|.++..--..+.++++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 345566666665554444445555556666665553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=1.4e-05 Score=71.66 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=12.5
Q ss_pred CcEEEcCCcccccccccccCCCCCCcEEEcccC
Q 043317 260 LWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENN 292 (700)
Q Consensus 260 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 292 (700)
|++||++++.++......+..+++|+.|+|++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 344444444433333333333333333333333
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.00062 Score=58.00 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=20.5
Q ss_pred CCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317 566 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602 (700)
Q Consensus 566 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 602 (700)
+|+.|||++|+|+...+..|..+++|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3555555555555544455555555555666666554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.00 E-value=0.0013 Score=56.09 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=47.7
Q ss_pred eEECCCCcCc-ccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc
Q 043317 521 GLDLSCNELT-GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578 (700)
Q Consensus 521 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 578 (700)
.++.++++++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6889999997 35665443 46999999999999888888999999999999999886
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.00 E-value=0.00051 Score=62.68 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=18.9
Q ss_pred CCCccEEECcCC---cccc----cCChhhhccCCCCEEecCCCcc
Q 043317 400 SSKLMTLDLRGN---NLEG----QIPDQICQLRRLGMMDLSHNRF 437 (700)
Q Consensus 400 ~~~L~~L~l~~N---~l~~----~~~~~~~~l~~L~~L~Ls~N~l 437 (700)
-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+
T Consensus 125 N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 125 TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 345666666543 2221 1223444556666777665543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00071 Score=61.72 Aligned_cols=114 Identities=14% Similarity=0.208 Sum_probs=81.7
Q ss_pred cccCCCCCcEEEcccC-cCCCC----cchhhcCCCCCcEEEcccCcCccc----chhhccCCCCCCEEEccCccCcccCC
Q 043317 301 GLLNSTKLYQLDISHN-FLSGH----IPHWMGNFSNLEILLMSNNCLEGN----IPVQLLNHRTLKLLSVSENYLSGSMT 371 (700)
Q Consensus 301 ~~~~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~ 371 (700)
.+.+-+.|++|+|++| .+... +..++..-..|+.|+|++|.+... +...+.....|+.|+|++|.|.....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455688999999986 77642 345566678899999999999743 34455667899999999999976433
Q ss_pred Ccc-----CCCCCcEEEccCC---cCcc----CcchhhhCCCCccEEECcCCccc
Q 043317 372 SSF-----NLSSLKHLYVQKN---ALSG----PIPDMLFRSSKLMTLDLRGNNLE 414 (700)
Q Consensus 372 ~~~-----~l~~L~~L~l~~n---~l~~----~~~~~~~~~~~L~~L~l~~N~l~ 414 (700)
..+ .-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 222 3567999999865 3332 23445666789999999887654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.10 E-value=35 Score=26.66 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=25.4
Q ss_pred cCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEccc
Q 043317 49 QLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96 (700)
Q Consensus 49 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 96 (700)
.++.+-..+|.+|.+|+.+.+..+ ++ .+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 344444556666666666666543 22 23335566666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.53 E-value=24 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=17.2
Q ss_pred cccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcc
Q 043317 299 EEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338 (700)
Q Consensus 299 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 338 (700)
...|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 334444444444444433 222333444444445444443
No 167
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=25.90 E-value=27 Score=20.74 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=8.8
Q ss_pred eeehhhhhhhhhhHHHhhh
Q 043317 665 FGASYVTVILGLFAILWIN 683 (700)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~ 683 (700)
+.+|.+++|+++-..+.++
T Consensus 12 ~i~gl~vif~~lg~tflyw 30 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEE
Confidence 3445555554444444443
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.54 E-value=30 Score=21.53 Aligned_cols=8 Identities=0% Similarity=-0.276 Sum_probs=3.1
Q ss_pred ehhhhhhh
Q 043317 667 ASYVTVIL 674 (700)
Q Consensus 667 ~~~~~~~~ 674 (700)
++.++++.
T Consensus 18 vG~v~gv~ 25 (38)
T 2k1k_A 18 FGLLLGAA 25 (38)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 34333333
No 169
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=20.01 E-value=27 Score=18.73 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=9.0
Q ss_pred chhhHHHHHHHhh
Q 043317 685 FWRKRWFYFIDAL 697 (700)
Q Consensus 685 ~~~~~~~~~~~~~ 697 (700)
-||.+|.+|+.|.
T Consensus 10 iwrawyiqyve~~ 22 (26)
T 4gnt_B 10 IWRAWYIQYVQRX 22 (26)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHh
Confidence 4777888887764
Done!