Query 043319
Match_columns 164
No_of_seqs 157 out of 1253
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1E-53 3.5E-58 331.1 11.3 158 4-163 22-181 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 6E-53 2.1E-57 321.2 9.8 148 13-162 4-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 1.1E-36 3.7E-41 227.1 4.2 136 12-153 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3.2E-30 1.1E-34 190.9 1.6 130 12-150 5-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 6.6E-27 2.3E-31 173.4 2.2 104 14-119 2-111 (149)
6 2js7_A Myeloid differentiation 99.9 3.9E-26 1.3E-30 171.2 6.1 100 14-115 13-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 3.9E-26 1.3E-30 174.0 3.6 106 11-118 29-140 (178)
8 1t3g_A X-linked interleukin-1 99.9 2.7E-25 9.1E-30 166.5 7.0 100 16-115 1-114 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 2.5E-19 8.5E-24 162.3 6.8 103 11-115 664-774 (844)
10 1eiw_A Hypothetical protein MT 98.3 5.3E-07 1.8E-11 63.1 4.4 72 16-110 3-74 (111)
11 3hyn_A Putative signal transdu 97.0 0.0033 1.1E-07 47.4 8.1 100 32-134 32-141 (189)
12 2f62_A Nucleoside 2-deoxyribos 92.9 0.48 1.6E-05 34.6 7.7 69 31-99 26-98 (161)
13 2khz_A C-MYC-responsive protei 89.6 2.1 7.1E-05 31.0 8.3 82 13-98 7-102 (165)
14 4fyk_A Deoxyribonucleoside 5'- 82.6 7.9 0.00027 27.9 8.1 76 19-98 4-93 (152)
15 3ehd_A Uncharacterized conserv 78.3 15 0.0005 26.7 8.3 74 31-109 19-103 (162)
16 2yvq_A Carbamoyl-phosphate syn 73.7 5.4 0.00019 28.1 4.9 61 20-82 27-106 (143)
17 1s2d_A Purine trans deoxyribos 72.6 19 0.00064 26.1 7.7 67 31-98 22-108 (167)
18 2jug_A TUBC protein; docking d 53.4 8.8 0.0003 24.0 2.4 37 35-71 8-48 (78)
19 1byr_A Protein (endonuclease); 47.8 45 0.0015 22.6 5.7 37 32-69 14-51 (155)
20 1sc3_B Interleukin-1 beta conv 44.5 6.1 0.00021 25.6 0.6 25 21-45 21-45 (88)
21 1f8y_A Nucleoside 2-deoxyribos 43.2 72 0.0025 22.6 6.3 68 31-99 18-106 (157)
22 1v95_A Nuclear receptor coacti 43.1 53 0.0018 22.8 5.4 46 31-77 21-67 (130)
23 2ql9_B Caspase-7; cysteine pro 41.2 7 0.00024 25.7 0.5 30 16-45 9-47 (97)
24 1qtn_B Caspase-8; apoptosis, d 40.7 6.6 0.00023 25.8 0.3 31 15-45 10-49 (95)
25 3czq_A Putative polyphosphate 38.0 1E+02 0.0036 24.4 7.0 99 19-118 86-204 (304)
26 4g84_A Histidine--tRNA ligase, 37.8 71 0.0024 26.2 6.3 61 15-79 364-425 (464)
27 2dko_B Caspase-3; low barrier 37.8 8.5 0.00029 25.6 0.5 32 14-45 13-53 (103)
28 1wu7_A Histidyl-tRNA synthetas 37.3 44 0.0015 27.4 4.9 58 17-79 332-390 (434)
29 1pyo_B Caspase-2; apoptosis, c 36.8 9 0.00031 25.6 0.5 31 15-45 12-51 (105)
30 2d00_A V-type ATP synthase sub 35.1 84 0.0029 20.8 5.2 65 39-114 16-80 (109)
31 3aon_B V-type sodium ATPase su 34.8 41 0.0014 22.8 3.6 61 40-113 16-76 (115)
32 4a6h_A Phosphatidylinositol 4, 34.5 25 0.00085 23.8 2.5 20 138-157 101-120 (120)
33 1evl_A Threonyl-tRNA synthetas 33.5 61 0.0021 26.2 5.1 56 17-76 298-354 (401)
34 3net_A Histidyl-tRNA synthetas 33.3 54 0.0019 27.3 4.9 61 17-81 371-431 (465)
35 4g85_A Histidine-tRNA ligase, 32.8 1E+02 0.0035 25.9 6.6 61 15-79 417-478 (517)
36 1bax_A M-PMV MA, M-PMV matrix 32.8 23 0.00078 23.4 1.9 18 31-48 9-26 (94)
37 3lc0_A Histidyl-tRNA synthetas 31.5 89 0.003 26.0 5.9 60 16-79 360-419 (456)
38 3dt5_A Uncharacterized protein 30.9 15 0.00051 24.6 0.8 60 81-151 36-99 (135)
39 2xzd_B Caspase-3; hydrolase-pr 30.5 14 0.00047 25.3 0.6 31 15-45 13-52 (118)
40 1nj1_A PROR, proline-tRNA synt 29.8 44 0.0015 28.3 3.7 44 17-60 314-362 (501)
41 3hjn_A DTMP kinase, thymidylat 29.6 59 0.002 23.5 4.0 32 21-52 2-35 (197)
42 3rjm_B Caspase-2; caspase-2, c 27.5 15 0.00052 25.1 0.4 31 15-45 13-52 (117)
43 2pw6_A Uncharacterized protein 27.4 1.4E+02 0.0049 23.0 6.1 69 31-101 95-164 (271)
44 2yry_A Pleckstrin homology dom 27.3 43 0.0015 21.6 2.7 19 138-156 103-121 (122)
45 2i4l_A Proline-tRNA ligase; al 27.0 28 0.00095 29.0 2.0 44 18-61 366-412 (458)
46 1qe0_A Histidyl-tRNA synthetas 26.6 67 0.0023 26.0 4.2 58 17-79 329-387 (420)
47 3ikl_A DNA polymerase subunit 26.4 2.2E+02 0.0077 23.9 7.5 65 15-83 348-416 (459)
48 1v5p_A Pleckstrin homology dom 26.0 45 0.0015 22.5 2.6 20 138-157 103-122 (126)
49 4e51_A Histidine--tRNA ligase; 25.3 77 0.0026 26.5 4.4 62 17-79 354-416 (467)
50 2fcj_A Small toprim domain pro 25.2 51 0.0017 22.6 2.7 64 32-98 39-103 (119)
51 3pid_A UDP-glucose 6-dehydroge 25.0 52 0.0018 27.4 3.3 49 27-75 347-400 (432)
52 4a8j_B Elongator complex prote 24.8 1.6E+02 0.0055 23.1 5.8 37 72-112 101-137 (270)
53 2d9v_A Pleckstrin homology dom 24.8 54 0.0018 21.8 2.9 22 138-159 97-118 (130)
54 3l4e_A Uncharacterized peptida 24.7 2.1E+02 0.0071 20.9 6.4 69 18-93 29-98 (206)
55 2i2x_B MTAC, methyltransferase 24.6 1.2E+02 0.0042 23.0 5.2 86 19-114 125-212 (258)
56 3ojo_A CAP5O; rossmann fold, c 24.5 90 0.0031 25.9 4.7 61 26-87 329-392 (431)
57 3sm9_A Mglur3, metabotropic gl 24.4 57 0.002 26.9 3.5 59 20-78 188-249 (479)
58 2cof_A Protein KIAA1914; PH do 23.9 55 0.0019 20.8 2.7 19 138-156 84-102 (107)
59 2lpy_A Matrix protein P10; GAG 23.6 38 0.0013 23.5 1.8 20 31-50 8-27 (124)
60 1htt_A Histidyl-tRNA synthetas 23.4 59 0.002 26.4 3.3 58 16-77 326-386 (423)
61 4h3d_A 3-dehydroquinate dehydr 23.3 1.1E+02 0.0039 23.4 4.8 63 40-103 107-169 (258)
62 3hly_A Flavodoxin-like domain; 23.1 1.9E+02 0.0064 19.9 8.0 50 31-84 15-64 (161)
63 2i5f_A Pleckstrin; PH domain, 22.7 58 0.002 20.4 2.6 17 138-154 92-108 (109)
64 1tu9_A Hypothetical protein PA 22.6 78 0.0027 21.1 3.4 41 112-156 85-127 (134)
65 4a7p_A UDP-glucose dehydrogena 22.4 78 0.0027 26.4 3.9 66 22-87 330-406 (446)
66 2i4r_A V-type ATP synthase sub 22.3 73 0.0025 21.0 3.0 63 40-113 23-86 (102)
67 3czp_A Putative polyphosphate 21.9 1.5E+02 0.0053 25.1 5.7 102 17-119 41-162 (500)
68 4f21_A Carboxylesterase/phosph 21.6 1.3E+02 0.0044 22.3 4.8 34 17-50 183-218 (246)
69 3n75_A LDC, lysine decarboxyla 21.4 2.4E+02 0.0081 25.1 7.0 69 32-115 17-85 (715)
70 1upq_A PEPP1; PH domain, phosp 21.0 65 0.0022 20.7 2.6 21 138-158 92-112 (123)
71 1egw_A MADS box transcription 20.6 35 0.0012 21.5 1.0 33 67-99 36-68 (77)
72 2zt5_A Glycyl-tRNA synthetase; 20.2 1.7E+02 0.0057 25.9 5.7 60 18-80 560-620 (693)
73 2j3l_A Prolyl-tRNA synthetase; 20.2 1.2E+02 0.004 25.8 4.7 60 18-81 471-533 (572)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-53 Score=331.05 Aligned_cols=158 Identities=41% Similarity=0.741 Sum_probs=140.0
Q ss_pred CCCCCCcCCCCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCc
Q 043319 4 KAQKPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESY 82 (164)
Q Consensus 4 ~~~~~~~~~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y 82 (164)
++++++++.+++++||||||||++|+|+.|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||
T Consensus 22 ~~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nY 101 (204)
T 3ozi_A 22 SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGY 101 (204)
T ss_dssp ------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTG
T ss_pred ccCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccc
Confidence 34444455557899999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHhhhh-hcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccceee
Q 043319 83 ASSRWCLDELVKILDCKKE-YAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHS 161 (164)
Q Consensus 83 ~~S~wc~~El~~~~~~~~~-~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v~~~~G~~~ 161 (164)
++|.||++||+.|++|.++ ++++||||||+|+|++||+|+|.||++|.++++++ +++++++||.||++|++++||++
T Consensus 102 a~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~ 179 (204)
T 3ozi_A 102 ADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHI 179 (204)
T ss_dssp GGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEE
T ss_pred ccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceec
Confidence 9999999999999999865 57899999999999999999999999999999876 47899999999999999999998
Q ss_pred cC
Q 043319 162 LN 163 (164)
Q Consensus 162 ~~ 163 (164)
.+
T Consensus 180 ~~ 181 (204)
T 3ozi_A 180 GK 181 (204)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=6e-53 Score=321.16 Aligned_cols=148 Identities=48% Similarity=0.789 Sum_probs=127.7
Q ss_pred CCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHH
Q 043319 13 SGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDE 91 (164)
Q Consensus 13 s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E 91 (164)
|.+++||||||||++|+|+.|++||+.+|+++||++|+|++ +.+|+.+.++|.+||++|+++|+|||+||++|.||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 45789999999999999989999999999999999999987 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccceeec
Q 043319 92 LVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSL 162 (164)
Q Consensus 92 l~~~~~~~~~~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v~~~~G~~~~ 162 (164)
|..|++|.++++++||||||+|+|++||+|+|.||++|.+++++ .+++++++||.||++|++++|+++.
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 99999999888999999999999999999999999999999987 5689999999999999999999873
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=1.1e-36 Score=227.07 Aligned_cols=136 Identities=20% Similarity=0.344 Sum_probs=118.1
Q ss_pred CCCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHH
Q 043319 12 KSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCLD 90 (164)
Q Consensus 12 ~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~ 90 (164)
....++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 34578999999999999 568999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 043319 91 ELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEA 153 (164)
Q Consensus 91 El~~~~~~~~~~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v 153 (164)
||..++++..+++.+||||||+|+|++|++|.|.||++|.... ....+.++-..|.++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~-----~~~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT-----STKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET-----TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc-----CcccHHHHHHHHHHH
Confidence 9999999877778899999999999999999999998775322 133455555555544
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.95 E-value=3.2e-30 Score=190.88 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=92.8
Q ss_pred CCCCceecEEEecccCcCcccHHHHHHHHHhc--CCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhH
Q 043319 12 KSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWC 88 (164)
Q Consensus 12 ~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~--~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 88 (164)
...++.|||||||+++|+ .|+.+|..+|++ .|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 335789999999999996 589999999998 5999999988 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcceeeeEEEeeCCccc----ccccC----chHHHHHHHHHHhcCChHHHHHHHHHH
Q 043319 89 LDELVKILDCKKEYAQIVIPVFYRVDPSDV----RNRTG----SFGDSFSKLAERLKVNTEELRSWRNAL 150 (164)
Q Consensus 89 ~~El~~~~~~~~~~~~~iiPVfy~v~p~~v----~~~~g----~f~~~f~~~~~~~~~~~~~~~~W~~Al 150 (164)
+.|+..|+.+...+..+||||||+|+++++ +.... .....|..+ .+.+.+|+.||
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 999999999863333478899999986655 43322 123444443 47788898875
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.92 E-value=6.6e-27 Score=173.41 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=92.4
Q ss_pred CCceecEEEecccCcCcccHHHH-HHHHHhcC--CeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHH
Q 043319 14 GVHKYDVFVSFRGEDTQDNFTSH-LYSTLCRQ--NIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCL 89 (164)
Q Consensus 14 ~~~~ydVFISy~~~D~~~~f~~~-L~~~L~~~--gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 89 (164)
.++.|||||||+++|. .|+.+ |...|++. |+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4688999999999996 69986 99999986 999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhhcceeeeEEEe-eCCcccc
Q 043319 90 DELVKILDC-KKEYAQIVIPVFYR-VDPSDVR 119 (164)
Q Consensus 90 ~El~~~~~~-~~~~~~~iiPVfy~-v~p~~v~ 119 (164)
.|+..|+++ .++++.+||||||+ +.+.++.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999999864 45567899999994 5554443
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.92 E-value=3.9e-26 Score=171.18 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=90.6
Q ss_pred CCceecEEEecccCcCcccHHHHHHHHHhcC--CeeeeecCC-cCCcccchHHHHHhhh-cCCeEEEEeecCccCchhHH
Q 043319 14 GVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQ--NIQTFIDDQ-LNRGDEISESLVNAIE-ASDISVIVFSESYASSRWCL 89 (164)
Q Consensus 14 ~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~--gi~vf~d~~-~~~G~~~~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc~ 89 (164)
.++.|||||||+++|. .||.+|..+|++. |+++|++++ +.||+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 4689999999999994 7999999999984 699999988 9999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-hhhcceeeeEEEeeCC
Q 043319 90 DELVKILDCK-KEYAQIVIPVFYRVDP 115 (164)
Q Consensus 90 ~El~~~~~~~-~~~~~~iiPVfy~v~p 115 (164)
.|+..|+++. ++++.+||||+|+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999874 4556799999997543
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=3.9e-26 Score=173.99 Aligned_cols=106 Identities=21% Similarity=0.364 Sum_probs=88.5
Q ss_pred CCCCCceecEEEecccCcCcccHHHH-HHHHHhc--CCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCch
Q 043319 11 EKSGVHKYDVFVSFRGEDTQDNFTSH-LYSTLCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSR 86 (164)
Q Consensus 11 ~~s~~~~ydVFISy~~~D~~~~f~~~-L~~~L~~--~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~ 86 (164)
....++.|||||||+++|. .||.. |...|++ .|+++|++++ +.||+.+.++|.++|++|+++|+|+||+|++|.
T Consensus 29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 3456789999999999995 79975 9999998 8999999998 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh-hhhhcceeeeEEEe-eCCccc
Q 043319 87 WCLDELVKILDC-KKEYAQIVIPVFYR-VDPSDV 118 (164)
Q Consensus 87 wc~~El~~~~~~-~~~~~~~iiPVfy~-v~p~~v 118 (164)
||+.|+..|+++ .++++.+||||||+ +.+.++
T Consensus 107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l 140 (178)
T 2j67_A 107 WCHYEFYFAHHNLFHENSDHIILILLEPIPFYCI 140 (178)
T ss_dssp GGGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence 999999999865 35567799999995 444444
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.91 E-value=2.7e-25 Score=166.50 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=88.6
Q ss_pred ceecEEEecccCcC---------cccHHHHHHH-HHh-cCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCcc
Q 043319 16 HKYDVFVSFRGEDT---------QDNFTSHLYS-TLC-RQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYA 83 (164)
Q Consensus 16 ~~ydVFISy~~~D~---------~~~f~~~L~~-~L~-~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~ 83 (164)
+.|||||||+++|. ++.|+.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3579988665 699 79999999998 999999999999999999999999999997
Q ss_pred -CchhHHHHHHHHHHhh-hhhcceeeeEEEeeCC
Q 043319 84 -SSRWCLDELVKILDCK-KEYAQIVIPVFYRVDP 115 (164)
Q Consensus 84 -~S~wc~~El~~~~~~~-~~~~~~iiPVfy~v~p 115 (164)
.|.||+.|+..|+++. ++++..||||+|+-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999875 5567899999986443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=162.30 Aligned_cols=103 Identities=17% Similarity=0.315 Sum_probs=91.5
Q ss_pred CCCCCceecEEEecccCcCcccHH-HHHHHHHhc-----CCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCcc
Q 043319 11 EKSGVHKYDVFVSFRGEDTQDNFT-SHLYSTLCR-----QNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYA 83 (164)
Q Consensus 11 ~~s~~~~ydVFISy~~~D~~~~f~-~~L~~~L~~-----~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~ 83 (164)
.....+.|||||||+++|. .|| ..|...|+. .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+
T Consensus 664 ~~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~ 741 (844)
T 3j0a_A 664 TEPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFL 741 (844)
T ss_dssp GSSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHH
T ss_pred ccccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccc
Confidence 3446789999999999995 577 779999985 5899999999 999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhh-hhhcceeeeEEEeeCC
Q 043319 84 SSRWCLDELVKILDCK-KEYAQIVIPVFYRVDP 115 (164)
Q Consensus 84 ~S~wc~~El~~~~~~~-~~~~~~iiPVfy~v~p 115 (164)
.|+||..|+..|+.+. ++++.+||||||+.-|
T Consensus 742 ~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 742 RDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp HHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred cChHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999999998774 5677899999996443
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.31 E-value=5.3e-07 Score=63.14 Aligned_cols=72 Identities=8% Similarity=0.023 Sum_probs=52.7
Q ss_pred ceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHH
Q 043319 16 HKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKI 95 (164)
Q Consensus 16 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~ 95 (164)
.+|.+||||+.+| . ...|...|.+.|+..- | +.|+.|++.|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4699999999988 2 3445555543344322 2 578999999999999999999999999877
Q ss_pred HHhhhhhcceeeeEE
Q 043319 96 LDCKKEYAQIVIPVF 110 (164)
Q Consensus 96 ~~~~~~~~~~iiPVf 110 (164)
.+ .+..||-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 64 344666654
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.99 E-value=0.0033 Score=47.41 Aligned_cols=100 Identities=19% Similarity=0.198 Sum_probs=67.2
Q ss_pred cHHHHHHHHHhcCCeeeeecCC-c----CC----cccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhh
Q 043319 32 NFTSHLYSTLCRQNIQTFIDDQ-L----NR----GDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEY 102 (164)
Q Consensus 32 ~f~~~L~~~L~~~gi~vf~d~~-~----~~----G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~ 102 (164)
.....|..--.+..+--|.|-+ . .- -..|...+.+.|+.|+.+|+++|++...|.|...|+..+++ +.
T Consensus 32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~ 108 (189)
T 3hyn_A 32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TK 108 (189)
T ss_dssp HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TT
T ss_pred HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hc
Confidence 4556666655555554566643 2 22 23467788889999999999999999999999999998872 23
Q ss_pred cceeeeEEEeeC-CcccccccCchHHHHHHHHH
Q 043319 103 AQIVIPVFYRVD-PSDVRNRTGSFGDSFSKLAE 134 (164)
Q Consensus 103 ~~~iiPVfy~v~-p~~v~~~~g~f~~~f~~~~~ 134 (164)
+.+||-|..+-+ .+++..-.|.|......++-
T Consensus 109 ~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~wp 141 (189)
T 3hyn_A 109 GLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWD 141 (189)
T ss_dssp CCCEEEEETTCCSGGGTBCTTSCBCHHHHHHHH
T ss_pred CCcEEEEECCccccchhhhccccchhhHhhcCC
Confidence 558887765422 33555445655555544443
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=92.93 E-value=0.48 Score=34.64 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHhcCCeeeeecCC--cCCcccchHHHHHhhhcCCeEEEEeec--CccCchhHHHHHHHHHHhh
Q 043319 31 DNFTSHLYSTLCRQNIQTFIDDQ--LNRGDEISESLVNAIEASDISVIVFSE--SYASSRWCLDELVKILDCK 99 (164)
Q Consensus 31 ~~f~~~L~~~L~~~gi~vf~d~~--~~~G~~~~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~El~~~~~~~ 99 (164)
..+...+.+.|++.|+.|+.-.+ ...+..+-+.-.++|++|+++|++++| .-..+.-+..|+..+....
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 36889999999999999888544 222233444447899999999999996 3334556888999887653
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=89.64 E-value=2.1 Score=31.04 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCceecEEEecccC-cCc-ccHHHHHHHHHhcCCeeeeecCCcCC-----cc-------cchHHHHHhhhcCCeEEEEe
Q 043319 13 SGVHKYDVFVSFRGE-DTQ-DNFTSHLYSTLCRQNIQTFIDDQLNR-----GD-------EISESLVNAIEASDISVIVF 78 (164)
Q Consensus 13 s~~~~ydVFISy~~~-D~~-~~f~~~L~~~L~~~gi~vf~d~~~~~-----G~-------~~~~~i~~aI~~S~~~Ivv~ 78 (164)
+.+.+..|||+=.-. +.. ......+.+.|++.| .|+.+....+ |. .+...-.+.|++|+++|+++
T Consensus 7 ~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~ 85 (165)
T 2khz_A 7 GEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEV 85 (165)
T ss_dssp SSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEEC
Confidence 345556799984322 111 225588999999999 8865443222 21 12223347899999999999
Q ss_pred ecCccCchhHHHHHHHHHHh
Q 043319 79 SESYASSRWCLDELVKILDC 98 (164)
Q Consensus 79 S~~y~~S~wc~~El~~~~~~ 98 (164)
+ ..+.-+..|+..+...
T Consensus 86 ~---~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 86 T---QPSLGVGYELGRAVAL 102 (165)
T ss_dssp S---SCCHHHHHHHHHHHHT
T ss_pred C---CCCCCHHHHHHHHHHC
Confidence 7 4567788999988764
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=82.61 E-value=7.9 Score=27.86 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=49.5
Q ss_pred cEEEe--cccCcCcccHHHHHHHHHhcCCeeeeecCCcC-----Ccc-------cchHHHHHhhhcCCeEEEEeecCccC
Q 043319 19 DVFVS--FRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLN-----RGD-------EISESLVNAIEASDISVIVFSESYAS 84 (164)
Q Consensus 19 dVFIS--y~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~-----~G~-------~~~~~i~~aI~~S~~~Ivv~S~~y~~ 84 (164)
.|||+ +++.+....+...+.+.|++.| .|+...--. .|+ .+.+.-.+.|++|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 45665 2332223367799999999999 675422111 122 144455678999999999988 55
Q ss_pred chhHHHHHHHHHHh
Q 043319 85 SRWCLDELVKILDC 98 (164)
Q Consensus 85 S~wc~~El~~~~~~ 98 (164)
|.-...|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 67788899988764
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=78.34 E-value=15 Score=26.66 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHhcC--CeeeeecCC-c----CCcccch----HHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhh
Q 043319 31 DNFTSHLYSTLCRQ--NIQTFIDDQ-L----NRGDEIS----ESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCK 99 (164)
Q Consensus 31 ~~f~~~L~~~L~~~--gi~vf~d~~-~----~~G~~~~----~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~ 99 (164)
..+...+.++|++. |+.+|.-.+ - .++..+. ..-.++|++|++.|.++. ....+..+..|+..+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~- 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK- 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC-
Confidence 35788899999875 899887554 2 1222233 344457999999999995 344567889999998764
Q ss_pred hhhcceeeeE
Q 043319 100 KEYAQIVIPV 109 (164)
Q Consensus 100 ~~~~~~iiPV 109 (164)
+..|+.+
T Consensus 97 ---gkPVi~~ 103 (162)
T 3ehd_A 97 ---GIPVVAL 103 (162)
T ss_dssp ---TCCEEEE
T ss_pred ---CCEEEEE
Confidence 3355554
No 16
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=73.67 E-value=5.4 Score=28.07 Aligned_cols=61 Identities=8% Similarity=0.138 Sum_probs=39.3
Q ss_pred EEEecccCcCcccHHHHHHHHHhcCCeeeeecC-------------C-c---CCc-c-cchHHHHHhhhcCCeEEEEeec
Q 043319 20 VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDD-------------Q-L---NRG-D-EISESLVNAIEASDISVIVFSE 80 (164)
Q Consensus 20 VFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~-------------~-~---~~G-~-~~~~~i~~aI~~S~~~Ivv~S~ 80 (164)
||||.+..|. .-+..+.+.|...|++++--. . + ..| + .-.++|.+.|++-.+-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987663 345556778888888776211 1 1 112 1 0004688889988888888888
Q ss_pred Cc
Q 043319 81 SY 82 (164)
Q Consensus 81 ~y 82 (164)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=72.62 E-value=19 Score=26.09 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHhcC--CeeeeecCC--c--------CCc--------ccchHHHHHhhhcCCeEEEEeecCccCchhHHH
Q 043319 31 DNFTSHLYSTLCRQ--NIQTFIDDQ--L--------NRG--------DEISESLVNAIEASDISVIVFSESYASSRWCLD 90 (164)
Q Consensus 31 ~~f~~~L~~~L~~~--gi~vf~d~~--~--------~~G--------~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~ 90 (164)
..+...+.+.|++. |+.+|.-.+ . ..| ..+-+.-.++|++|++.|.++...-.. .=+..
T Consensus 22 ~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~~~D-~GTa~ 100 (167)
T 1s2d_A 22 RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQLD-DGSAF 100 (167)
T ss_dssp HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESSSCC-HHHHH
T ss_pred HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCC-CCcee
Confidence 35889999999999 888887543 2 111 122334456899999999999875554 55788
Q ss_pred HHHHHHHh
Q 043319 91 ELVKILDC 98 (164)
Q Consensus 91 El~~~~~~ 98 (164)
|+..+...
T Consensus 101 EiGyA~al 108 (167)
T 1s2d_A 101 XIGFMRAM 108 (167)
T ss_dssp HHHHHHHT
T ss_pred ehhhHhhC
Confidence 99988764
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=53.38 E-value=8.8 Score=24.03 Aligned_cols=37 Identities=8% Similarity=0.244 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCeeeeecCC-cC---CcccchHHHHHhhhcC
Q 043319 35 SHLYSTLCRQNIQTFIDDQ-LN---RGDEISESLVNAIEAS 71 (164)
Q Consensus 35 ~~L~~~L~~~gi~vf~d~~-~~---~G~~~~~~i~~aI~~S 71 (164)
..|...|.+.||.+|.+.+ +. |-..+.+++...+.+.
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~ 48 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGA 48 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHH
Confidence 4567889999999999987 42 4445677777766553
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=47.81 E-value=45 Score=22.61 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=17.9
Q ss_pred cHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhh
Q 043319 32 NFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIE 69 (164)
Q Consensus 32 ~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~ 69 (164)
.+...+.+.+.+..=.+++-.- + +.+.+.+.+.++.+
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 3555666666654433433322 3 33445555555443
No 20
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=44.50 E-value=6.1 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=16.5
Q ss_pred EEecccCcCcccHHHHHHHHHhcCC
Q 043319 21 FVSFRGEDTQDNFTSHLYSTLCRQN 45 (164)
Q Consensus 21 FISy~~~D~~~~f~~~L~~~L~~~g 45 (164)
|.|||+......|+..|++.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 3455555445568888888887654
No 21
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=43.20 E-value=72 Score=22.60 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHhcCCe----eeeecCC--c--------CC---c----ccchHHHHHhhhcCCeEEEEeecCccCchhHH
Q 043319 31 DNFTSHLYSTLCRQNI----QTFIDDQ--L--------NR---G----DEISESLVNAIEASDISVIVFSESYASSRWCL 89 (164)
Q Consensus 31 ~~f~~~L~~~L~~~gi----~vf~d~~--~--------~~---G----~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 89 (164)
......+.+.|+++|. .+|.-.+ . .. + ..+-+.-.++|++|++.|.++...-. +.=+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~~-D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDEE-DVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGGC-CHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCCC-CccHH
Confidence 3578899999999985 6666443 2 11 1 12233445679999999999985444 45678
Q ss_pred HHHHHHHHhh
Q 043319 90 DELVKILDCK 99 (164)
Q Consensus 90 ~El~~~~~~~ 99 (164)
.|+..+....
T Consensus 97 ~EiGyA~A~g 106 (157)
T 1f8y_A 97 MELGYALSQG 106 (157)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 8999887653
No 22
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=43.13 E-value=53 Score=22.84 Aligned_cols=46 Identities=9% Similarity=0.123 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhh-hcCCeEEEE
Q 043319 31 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAI-EASDISVIV 77 (164)
Q Consensus 31 ~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI-~~S~~~Ivv 77 (164)
..++..+...|...|+++=+|.. .+++.+...|.++- .+.-..|||
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 57999999999999999988651 23566666666653 344444444
No 23
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=41.21 E-value=7 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=18.0
Q ss_pred ceecEEEecc---------cCcCcccHHHHHHHHHhcCC
Q 043319 16 HKYDVFVSFR---------GEDTQDNFTSHLYSTLCRQN 45 (164)
Q Consensus 16 ~~ydVFISy~---------~~D~~~~f~~~L~~~L~~~g 45 (164)
..-|.+++|+ +.+....|+..|++.|++.|
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3456666664 33334457788887776644
No 24
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=40.72 E-value=6.6 Score=25.75 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=18.5
Q ss_pred CceecEEEecccC---------cCcccHHHHHHHHHhcCC
Q 043319 15 VHKYDVFVSFRGE---------DTQDNFTSHLYSTLCRQN 45 (164)
Q Consensus 15 ~~~ydVFISy~~~---------D~~~~f~~~L~~~L~~~g 45 (164)
+..-|.+++|+.. +....|+..|++.|++.|
T Consensus 10 P~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 10 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 3456777776543 333457777777776543
No 25
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=37.98 E-value=1e+02 Score=24.43 Aligned_cols=99 Identities=10% Similarity=0.157 Sum_probs=56.8
Q ss_pred cEEEecccCcCc--ccHHHHHHHHHhcCCeeeeecCC---cCCcccchHHHHHhhhcCCeEEEEeecCccCch-------
Q 043319 19 DVFVSFRGEDTQ--DNFTSHLYSTLCRQNIQTFIDDQ---LNRGDEISESLVNAIEASDISVIVFSESYASSR------- 86 (164)
Q Consensus 19 dVFISy~~~D~~--~~f~~~L~~~L~~~gi~vf~d~~---~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~------- 86 (164)
-|||.|-|-|.. .+-+.+|.+.|..+|++|..-.. -..+..+...+..++-.. --|+|+.+.+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~-G~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTA-GEFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCT-TCEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccC-CeEEEEECCcchHHHHHHHhc
Confidence 589999777752 46889999999999998866442 222334444444444332 23455555543321
Q ss_pred hHHH-HH----HHHHH--h-hhhhcceeeeEEEeeCCccc
Q 043319 87 WCLD-EL----VKILD--C-KKEYAQIVIPVFYRVDPSDV 118 (164)
Q Consensus 87 wc~~-El----~~~~~--~-~~~~~~~iiPVfy~v~p~~v 118 (164)
.|-. |. ..+.+ . ....+..++-+|++|++..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 1211 11 22211 1 12346788888899988764
No 26
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=37.81 E-value=71 Score=26.18 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=38.9
Q ss_pred CceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhh-cCCeEEEEee
Q 043319 15 VHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIE-ASDISVIVFS 79 (164)
Q Consensus 15 ~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Ivv~S 79 (164)
....||+|..-+++. ...+..|...|.+.||++-+|.. .+..+..++..|-+ +...+ +|+.
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~-viiG 425 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLV-AIIG 425 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCEE-EECC
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEE-EEEC
Confidence 345789998766554 35678899999999999977542 22345445555543 34444 4443
No 27
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=37.77 E-value=8.5 Score=25.60 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=19.5
Q ss_pred CCceecEEEecccCc---------CcccHHHHHHHHHhcCC
Q 043319 14 GVHKYDVFVSFRGED---------TQDNFTSHLYSTLCRQN 45 (164)
Q Consensus 14 ~~~~ydVFISy~~~D---------~~~~f~~~L~~~L~~~g 45 (164)
.+..-|.+++|+..+ ....|+..|++.|++.|
T Consensus 13 iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 13 IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 345567777775432 23457777777776543
No 28
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=37.30 E-value=44 Score=27.40 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=37.1
Q ss_pred eecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhh-hcCCeEEEEee
Q 043319 17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAI-EASDISVIVFS 79 (164)
Q Consensus 17 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI-~~S~~~Ivv~S 79 (164)
.+||+|..-+++. ...+..|.+.|++.|++|-+|.+ +..+...+..|- .+....| |+.
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~i-iiG 390 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAV-IFG 390 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEE-EEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEE-EEC
Confidence 3788866544443 46788999999999999999874 233444444443 3445444 444
No 29
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=36.78 E-value=9 Score=25.57 Aligned_cols=31 Identities=6% Similarity=0.159 Sum_probs=18.7
Q ss_pred CceecEEEeccc---------CcCcccHHHHHHHHHhcCC
Q 043319 15 VHKYDVFVSFRG---------EDTQDNFTSHLYSTLCRQN 45 (164)
Q Consensus 15 ~~~ydVFISy~~---------~D~~~~f~~~L~~~L~~~g 45 (164)
+..-|.+++|+. .+....|+..|++.|++.+
T Consensus 12 P~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 12 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CSSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 345566666653 3333457888888876543
No 30
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=35.12 E-value=84 Score=20.85 Aligned_cols=65 Identities=9% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhhcceeeeEEEeeC
Q 043319 39 STLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVD 114 (164)
Q Consensus 39 ~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPVfy~v~ 114 (164)
-.+.-.|+.+|... ..+.+.+.+.+.+++-++.|++++++.+. .+.+++.... ....+|++..+.
T Consensus 16 ~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~~------~~~~~P~Il~IP 80 (109)
T 2d00_A 16 QGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERLM------RGRDLPVLLPIA 80 (109)
T ss_dssp HHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHHT------TCCCCCEEEEES
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHHH------hCCCCeEEEEEC
Confidence 34556688887532 23445556666777789999999999988 2333433321 124467666554
No 31
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=34.79 E-value=41 Score=22.77 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhhcceeeeEEEee
Q 043319 40 TLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRV 113 (164)
Q Consensus 40 ~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPVfy~v 113 (164)
.++-.|+.+|... .-+.+.+.+.+.+++ ++.|++++++.+.. +.+++.. ++ ...+|.+..+
T Consensus 16 GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~------~~~~P~IveI 76 (115)
T 3aon_B 16 PFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK------GQLTPAIILI 76 (115)
T ss_dssp GGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH------TSSSCEEEEE
T ss_pred HHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh------CCCCCEEEEE
Confidence 4556688877532 224455566666777 99999999998763 4444443 21 2455666544
No 32
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=34.46 E-value=25 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 043319 138 VNTEELRSWRNALKEAATLS 157 (164)
Q Consensus 138 ~~~~~~~~W~~Al~~v~~~~ 157 (164)
.+.+..++|..||..+++++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 46889999999999998764
No 33
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=33.45 E-value=61 Score=26.22 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=37.2
Q ss_pred eecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhh-cCCeEEE
Q 043319 17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIE-ASDISVI 76 (164)
Q Consensus 17 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Iv 76 (164)
.++|+|---+++ ....+..|.+.|++.|++|-+|.+ +..+...+..|-. +....|+
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~ii 354 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLV 354 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEE
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEE
Confidence 378887654443 346889999999999999999875 2344445555533 3444444
No 34
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=33.27 E-value=54 Score=27.32 Aligned_cols=61 Identities=7% Similarity=0.024 Sum_probs=40.1
Q ss_pred eecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecC
Q 043319 17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSES 81 (164)
Q Consensus 17 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~ 81 (164)
.+||+|-.-+++. ...+..+.+.|++.|++|-+|.+ +..+...+..|-+.---.++|+.++
T Consensus 371 p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 371 PAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp SCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 4789976655443 46788999999999999999864 2344445555544333345555544
No 35
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=32.80 E-value=1e+02 Score=25.86 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=38.6
Q ss_pred CceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhh-cCCeEEEEee
Q 043319 15 VHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIE-ASDISVIVFS 79 (164)
Q Consensus 15 ~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Ivv~S 79 (164)
...+||||..-+++. ...+..|...|.+.||++-++.. .+..+..++..|-+ +... ++|+.
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~-~viiG 478 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPL-VAIIG 478 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCCE-EEEEC
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCE-EEEEC
Confidence 346899987755543 35678899999999999977642 22345555555544 3444 44443
No 36
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=32.79 E-value=23 Score=23.43 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHhcCCeee
Q 043319 31 DNFTSHLYSTLCRQNIQT 48 (164)
Q Consensus 31 ~~f~~~L~~~L~~~gi~v 48 (164)
..|+..|...|.++||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 469999999999999998
No 37
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=31.51 E-value=89 Score=26.04 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=39.9
Q ss_pred ceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEee
Q 043319 16 HKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFS 79 (164)
Q Consensus 16 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S 79 (164)
...||||..-+++. ...+-.+...|++.|++|-++.. +.++..++..|-+.--..++|+.
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 34788877655554 35677889999999999988653 33466666666555444555554
No 38
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=30.86 E-value=15 Score=24.59 Aligned_cols=60 Identities=20% Similarity=0.501 Sum_probs=34.4
Q ss_pred CccCchhHHHHHHHHHHhhhh--h--cceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043319 81 SYASSRWCLDELVKILDCKKE--Y--AQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALK 151 (164)
Q Consensus 81 ~y~~S~wc~~El~~~~~~~~~--~--~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~ 151 (164)
.|+-.....+|+..++.|.+- + -.+|+|.-++...+.+... .++. | ...+.+++|+.||.
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkiags-anwt---------f-yakedfeqwkeald 99 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIAGS-ANWT---------F-YAKEDFEQWKEALD 99 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCTTC-SSEE---------E-SSHHHHHHHHHHHH
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhccc-ccee---------E-EeHhhHHHHHHHHH
Confidence 455556678899999988642 1 2477887665444444321 1110 0 12566777777764
No 39
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=30.52 E-value=14 Score=25.34 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=18.4
Q ss_pred CceecEEEecccC---------cCcccHHHHHHHHHhcCC
Q 043319 15 VHKYDVFVSFRGE---------DTQDNFTSHLYSTLCRQN 45 (164)
Q Consensus 15 ~~~ydVFISy~~~---------D~~~~f~~~L~~~L~~~g 45 (164)
+..-|.+++|+.. .....|+..|++.|++.+
T Consensus 13 P~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 13 PVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp CTTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3345667766533 333457788877776543
No 40
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=29.78 E-value=44 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=31.5
Q ss_pred eecEEEecc-c-Cc--CcccHHHHHHHHHhcCCeeeeecCC-cCCcccc
Q 043319 17 KYDVFVSFR-G-ED--TQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEI 60 (164)
Q Consensus 17 ~ydVFISy~-~-~D--~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~ 60 (164)
.|+|+|--- + .+ .-...+..|.+.|++.|++|-+|.+ -.+|..+
T Consensus 314 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~ 362 (501)
T 1nj1_A 314 AHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKY 362 (501)
T ss_dssp SCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHH
T ss_pred CceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHH
Confidence 478877654 3 21 2346889999999999999999986 4455544
No 41
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=29.56 E-value=59 Score=23.55 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=24.7
Q ss_pred EEecccCcCc--ccHHHHHHHHHhcCCeeeeecC
Q 043319 21 FVSFRGEDTQ--DNFTSHLYSTLCRQNIQTFIDD 52 (164)
Q Consensus 21 FISy~~~D~~--~~f~~~L~~~L~~~gi~vf~d~ 52 (164)
||.+-|-|.. ..-+..|.+.|+++|++|..-.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 8888777742 4578899999999998876543
No 42
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=27.55 E-value=15 Score=25.05 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=18.9
Q ss_pred CceecEEEecccC---------cCcccHHHHHHHHHhcCC
Q 043319 15 VHKYDVFVSFRGE---------DTQDNFTSHLYSTLCRQN 45 (164)
Q Consensus 15 ~~~ydVFISy~~~---------D~~~~f~~~L~~~L~~~g 45 (164)
+..-|.+++|+.. .....|+..|++.|++.+
T Consensus 13 P~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 13 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp CSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 4456777776543 233457777777776543
No 43
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=27.37 E-value=1.4e+02 Score=22.98 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhh
Q 043319 31 DNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKE 101 (164)
Q Consensus 31 ~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~ 101 (164)
..++.++.+.|...|+.+-..+. +--|--+. +.-.-.+.++=||-+|-+...+.--..+|.+++...++
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd 164 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD 164 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 36999999999999997654333 44443332 22223456677888888865565555689988876543
No 44
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.27 E-value=43 Score=21.60 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 043319 138 VNTEELRSWRNALKEAATL 156 (164)
Q Consensus 138 ~~~~~~~~W~~Al~~v~~~ 156 (164)
.+++..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3588899999999998765
No 45
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=27.04 E-value=28 Score=29.05 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=30.7
Q ss_pred ecEEEeccc--CcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccch
Q 043319 18 YDVFVSFRG--EDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEIS 61 (164)
Q Consensus 18 ydVFISy~~--~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~ 61 (164)
++|+|---+ .+.....+..|++.|++.|++|-+|++ -.+|..+.
T Consensus 366 ~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~ 412 (458)
T 2i4l_A 366 FRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFA 412 (458)
T ss_dssp CSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHH
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHH
Confidence 688776332 122346889999999999999999986 44454443
No 46
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=26.63 E-value=67 Score=25.99 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=36.3
Q ss_pred eecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhh-cCCeEEEEee
Q 043319 17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIE-ASDISVIVFS 79 (164)
Q Consensus 17 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Ivv~S 79 (164)
.++|+|-.-+++. ...+..|.+.|++.|++|-+|.+ +..+...+..+-. +.. .++++.
T Consensus 329 p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p-~~iiig 387 (420)
T 1qe0_A 329 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAK-FTIVIG 387 (420)
T ss_dssp CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCS-EEEEEC
T ss_pred CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCC-EEEEEC
Confidence 3788876544332 35788999999999999999874 2334444444433 344 444444
No 47
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=26.36 E-value=2.2e+02 Score=23.88 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=36.3
Q ss_pred CceecEEEecccCcCcccHHHHHHHHHhcCCeeee--ecCC--cCCcccchHHHHHhhhcCCeEEEEeecCcc
Q 043319 15 VHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTF--IDDQ--LNRGDEISESLVNAIEASDISVIVFSESYA 83 (164)
Q Consensus 15 ~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf--~d~~--~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~ 83 (164)
+.+.-|.++-...|.-..++..|++.|++.||+|. +|++ -.+|.. +.++-..---.++|+.++-+
T Consensus 348 P~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK----~r~Ad~iGiPy~IiVG~kEl 416 (459)
T 3ikl_A 348 PIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQL----YSKYDEMSILFTVLVTETTL 416 (459)
T ss_dssp SCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHH----HHHHGGGTCSEEEEECTTST
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHH----HHHHHHcCCCEEEEECchhh
Confidence 34444444321123345789999999999999998 6663 344443 33332222224455555443
No 48
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.00 E-value=45 Score=22.48 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 043319 138 VNTEELRSWRNALKEAATLS 157 (164)
Q Consensus 138 ~~~~~~~~W~~Al~~v~~~~ 157 (164)
++++..+.|..||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46889999999999998764
No 49
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=25.35 E-value=77 Score=26.46 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=40.8
Q ss_pred eecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEee
Q 043319 17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFS 79 (164)
Q Consensus 17 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S 79 (164)
..||+|-.-+++. ...+..+.+.|++.|++|-+|.. -..+..+...+..|-+.---.++|+.
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 4688876544432 35788999999999999998764 11256677777776554333444554
No 50
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=25.16 E-value=51 Score=22.55 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=38.6
Q ss_pred cHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhH-HHHHHHHHHh
Q 043319 32 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWC-LDELVKILDC 98 (164)
Q Consensus 32 ~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc-~~El~~~~~~ 98 (164)
.-...|..+.+.+|+-+|.|.+ .+|+.+...|.+.+.++. ...+.+.+..=.-+ .+++..++..
T Consensus 39 ~~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~--hafi~r~~~gVE~a~~~~I~~aL~~ 103 (119)
T 2fcj_A 39 ARLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAE--HLYIDRAYREVAAAPIWHLAQVLLR 103 (119)
T ss_dssp HHHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSE--EECCCTTTCSTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCc--EEeccCCccCcccCCHHHHHHHHHh
Confidence 4455666777778888888775 567777777777777763 34445555432221 2455555544
No 51
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=25.00 E-value=52 Score=27.43 Aligned_cols=49 Identities=8% Similarity=0.179 Sum_probs=32.2
Q ss_pred CcCcccHHHHHHHHHhcCCeeeeecCC-cC----CcccchHHHHHhhhcCCeEE
Q 043319 27 EDTQDNFTSHLYSTLCRQNIQTFIDDQ-LN----RGDEISESLVNAIEASDISV 75 (164)
Q Consensus 27 ~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~----~G~~~~~~i~~aI~~S~~~I 75 (164)
.|.|.+=+-.|.+.|.++|..|...+- .. .|..+.+.+.++++++++.|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 477888889999999999998866554 32 23334457788899998855
No 52
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=24.81 E-value=1.6e+02 Score=23.05 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=26.7
Q ss_pred CeEEEEeecCccCchhHHHHHHHHHHhhhhhcceeeeEEEe
Q 043319 72 DISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYR 112 (164)
Q Consensus 72 ~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPVfy~ 112 (164)
+..|+|-|=||..+ .+|...+.....-.-.++-||+.
T Consensus 101 k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~ 137 (270)
T 4a8j_B 101 KHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHK 137 (270)
T ss_dssp CEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEET
T ss_pred ceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecC
Confidence 67899999999997 57777666544334577777763
No 53
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.76 E-value=54 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHHHHhhcccce
Q 043319 138 VNTEELRSWRNALKEAATLSGF 159 (164)
Q Consensus 138 ~~~~~~~~W~~Al~~v~~~~G~ 159 (164)
++++..+.|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 4688999999999999876643
No 54
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=24.67 E-value=2.1e+02 Score=20.94 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=43.0
Q ss_pred ecEEEecccCc-CcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHH
Q 043319 18 YDVFVSFRGED-TQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELV 93 (164)
Q Consensus 18 ydVFISy~~~D-~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~ 93 (164)
.=+||-|...+ .....+..+.++|++-|+.+-.-+ +.. .-.+++.+.|++++..++ +. -++..++..|.
T Consensus 29 ~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~--~~~~~~~~~l~~ad~I~l---~G-G~~~~l~~~L~ 98 (206)
T 3l4e_A 29 TVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT--ESLGEITTKLRKNDFIYV---TG-GNTFFLLQELK 98 (206)
T ss_dssp EEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT--SCHHHHHHHHHHSSEEEE---CC-SCHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC--CChHHHHHHHHhCCEEEE---CC-CCHHHHHHHHH
Confidence 44699997542 224688899999999998765422 211 123456678888887654 44 44445555553
No 55
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.63 E-value=1.2e+02 Score=22.95 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=49.6
Q ss_pred cEEEecccCcCcccHHH-HHHHHHhcCCeeeee-cCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHH
Q 043319 19 DVFVSFRGEDTQDNFTS-HLYSTLCRQNIQTFI-DDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKIL 96 (164)
Q Consensus 19 dVFISy~~~D~~~~f~~-~L~~~L~~~gi~vf~-d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~ 96 (164)
-|.+.--..|. +..-. -+...|+.+|+.|.. .... -.+++.+++++.+.-+|.+|-....+ +..+...+
T Consensus 125 ~vlla~~~gd~-HdiG~~iva~~L~~~G~~Vi~LG~~v-----p~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~i 195 (258)
T 2i2x_B 125 TVVCHVAEGDV-HDIGKNIVTALLRANGYNVVDLGRDV-----PAEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEVN 195 (258)
T ss_dssp EEEEEECTTCC-CCHHHHHHHHHHHHTTCEEEEEEEEC-----CSHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHHH
T ss_pred eEEEEeCCCCc-cHHHHHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHHH
Confidence 35554444454 34443 344567899999854 3222 23467778887777777777654443 33444444
Q ss_pred HhhhhhcceeeeEEEeeC
Q 043319 97 DCKKEYAQIVIPVFYRVD 114 (164)
Q Consensus 97 ~~~~~~~~~iiPVfy~v~ 114 (164)
+..++.+.. +||+.+..
T Consensus 196 ~~l~~~~~~-~~v~vGG~ 212 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGGG 212 (258)
T ss_dssp HHHHTTTCC-CCEEEEST
T ss_pred HHHHhcCCC-CcEEEECc
Confidence 444444445 89998653
No 56
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=24.53 E-value=90 Score=25.94 Aligned_cols=61 Identities=11% Similarity=0.239 Sum_probs=41.8
Q ss_pred cCcCcccHHHHHHHHHhcC-CeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEee-cCccCchh
Q 043319 26 GEDTQDNFTSHLYSTLCRQ-NIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFS-ESYASSRW 87 (164)
Q Consensus 26 ~~D~~~~f~~~L~~~L~~~-gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S-~~y~~S~w 87 (164)
..|.|.+=+-.|.+.|.++ |..|...+- .... .....+.+++++++..|+... +.|.+-+|
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 392 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSDHSEFKNLSD 392 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSCCGGGTSCCG
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecCCHHHhccCH
Confidence 3578888899999999999 998877655 3332 333456788999998666543 23444333
No 57
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=24.36 E-value=57 Score=26.92 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=34.2
Q ss_pred EEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCC--c-ccchHHHHHhhhcCCeEEEEe
Q 043319 20 VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNR--G-DEISESLVNAIEASDISVIVF 78 (164)
Q Consensus 20 VFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~--G-~~~~~~i~~aI~~S~~~Ivv~ 78 (164)
|-|=++..|-...++..|.+++++.|+.+-....+.. + ..+...+.+.|+.+..-|||+
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~ 249 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 249 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 3333444343456888999999999988766554433 2 233434436676655444443
No 58
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.88 E-value=55 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 043319 138 VNTEELRSWRNALKEAATL 156 (164)
Q Consensus 138 ~~~~~~~~W~~Al~~v~~~ 156 (164)
.+++..++|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4588899999999988754
No 59
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=23.61 E-value=38 Score=23.53 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHhcCCeeeee
Q 043319 31 DNFTSHLYSTLCRQNIQTFI 50 (164)
Q Consensus 31 ~~f~~~L~~~L~~~gi~vf~ 50 (164)
..|++.|+..|+++|++|-.
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~~ 27 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVKY 27 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHHHHCCeeecH
Confidence 46999999999999998754
No 60
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=23.36 E-value=59 Score=26.40 Aligned_cols=58 Identities=14% Similarity=0.290 Sum_probs=37.1
Q ss_pred ceecEEEecccCcCcccHHHHHHHHHhcC--CeeeeecCCcCCcccchHHHHHh-hhcCCeEEEE
Q 043319 16 HKYDVFVSFRGEDTQDNFTSHLYSTLCRQ--NIQTFIDDQLNRGDEISESLVNA-IEASDISVIV 77 (164)
Q Consensus 16 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~--gi~vf~d~~~~~G~~~~~~i~~a-I~~S~~~Ivv 77 (164)
..+||+|-.-+++ ....+..|.+.|++. |++|-+|.+ +..+...+..| ..+....|+|
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 3478888775543 246788999999999 999999875 23344444444 2344544443
No 61
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=23.34 E-value=1.1e+02 Score=23.35 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=33.1
Q ss_pred HHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhhc
Q 043319 40 TLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYA 103 (164)
Q Consensus 40 ~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~ 103 (164)
.+...|.--++|-++..++.+..++.+..+...+-| |.|-+..+..|-.+|+...+..+...+
T Consensus 107 ~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 107 EISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 333344333555554334344444544444544444 455555555666678877777765545
No 62
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.09 E-value=1.9e+02 Score=19.86 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccC
Q 043319 31 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYAS 84 (164)
Q Consensus 31 ~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~ 84 (164)
...+..|.+.|...|+.+-+-+ ..+.-.+.+...+.+++. |++-||.|..
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~---~~~~~~~~~~~~~~~~d~-ii~Gspty~g 64 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVD---LRAVDPQELIEAVSSARG-IVLGTPPSQP 64 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE---TTTCCHHHHHHHHHHCSE-EEEECCBSSC
T ss_pred HHHHHHHHHHHHhCCCeEEEEE---CCCCCHHHHHHHHHhCCE-EEEEcCCcCC
Confidence 4688999999998887653311 112122345555667775 5667899864
No 63
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=22.72 E-value=58 Score=20.39 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHhh
Q 043319 138 VNTEELRSWRNALKEAA 154 (164)
Q Consensus 138 ~~~~~~~~W~~Al~~v~ 154 (164)
.+++..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999875
No 64
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=22.64 E-value=78 Score=21.13 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=29.0
Q ss_pred eeCCcccccccCchHHHHHHHHHHhc--CChHHHHHHHHHHHHhhcc
Q 043319 112 RVDPSDVRNRTGSFGDSFSKLAERLK--VNTEELRSWRNALKEAATL 156 (164)
Q Consensus 112 ~v~p~~v~~~~g~f~~~f~~~~~~~~--~~~~~~~~W~~Al~~v~~~ 156 (164)
+|.|.+.. .+|+++....+.++ .+++....|..++..+++.
T Consensus 85 gV~p~~f~----~~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~~ 127 (134)
T 1tu9_A 85 DIRPELYD----LWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIAV 127 (134)
T ss_dssp CCCTTHHH----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHH----HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 56677764 36677776554454 3688889999999988753
No 65
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=22.37 E-value=78 Score=26.37 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=44.0
Q ss_pred Eecc--cCcCcccHHHHHHHHHhcCCeeeeecCC-cC-------CcccchHHHHHhhhcCCeEEEEee-cCccCchh
Q 043319 22 VSFR--GEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LN-------RGDEISESLVNAIEASDISVIVFS-ESYASSRW 87 (164)
Q Consensus 22 ISy~--~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~-------~G~~~~~~i~~aI~~S~~~Ivv~S-~~y~~S~w 87 (164)
++|. ..|.|.+=+-.|.+.|.++|..|...+- .. ++-.+.+...+++++++..|++-. +.|.+-+|
T Consensus 330 lafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 330 LTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp CSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred EEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 3553 3578888889999999999998876553 21 243444566788999988666543 33544333
No 66
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=22.32 E-value=73 Score=20.98 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=38.0
Q ss_pred HHhcCCeeeee-cCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhhcceeeeEEEee
Q 043319 40 TLCRQNIQTFI-DDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRV 113 (164)
Q Consensus 40 ~L~~~gi~vf~-d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPVfy~v 113 (164)
.+.-.|+..+. .. .-+.+.+.+.+.+++.++.|++++.+.++. +.+++. ... ....+|.+..+
T Consensus 23 GFrLaGi~~~~~~~---~~ee~~~~~~~l~~~~digIIlIte~ia~~--i~~~i~----~~~--~~~~~P~IieI 86 (102)
T 2i4r_A 23 GFMLAGISDIYEVT---SDEEIVKAVEDVLKRDDVGVVIMKQEYLKK--LPPVLR----REI--DEKVEPTFVSV 86 (102)
T ss_dssp HHHHTTCCCEEECC---SHHHHHHHHHHHHHCSSEEEEEEEGGGSTT--SCHHHH----TTT--TTCCSSEEEEE
T ss_pred HHHHcCCCcccCCC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHHH--HHHHHH----HHH--hCCCccEEEEE
Confidence 44556777666 22 123455566667778899999999998873 333332 221 22467777654
No 67
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=21.89 E-value=1.5e+02 Score=25.10 Aligned_cols=102 Identities=6% Similarity=0.037 Sum_probs=60.1
Q ss_pred eecEEEecccCcCc--ccHHHHHHHHHhcCCeeeeecCC---cCCcccchHHHHHhhhcCCeEEEEeecCccCch-----
Q 043319 17 KYDVFVSFRGEDTQ--DNFTSHLYSTLCRQNIQTFIDDQ---LNRGDEISESLVNAIEASDISVIVFSESYASSR----- 86 (164)
Q Consensus 17 ~ydVFISy~~~D~~--~~f~~~L~~~L~~~gi~vf~d~~---~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~----- 86 (164)
.+-|+|-+-|-|.. .+-+.+|.+.|.-+|++|..-.. -..+..+-....+.+-. +--|+|+.+.+-+.-
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~-~G~IvIfdRSwYs~~~v~rv 119 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPP-KGRTGIFFGNWYSQMLYARV 119 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCC-TTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCC-CCeEEEEeCchhhHHHHHHH
Confidence 35689999777752 46889999999999998866332 33444444444444444 334555655543211
Q ss_pred --hHHH-H----HHHHH--Hh-hhhhcceeeeEEEeeCCcccc
Q 043319 87 --WCLD-E----LVKIL--DC-KKEYAQIVIPVFYRVDPSDVR 119 (164)
Q Consensus 87 --wc~~-E----l~~~~--~~-~~~~~~~iiPVfy~v~p~~v~ 119 (164)
.|-. | +..+. +. ....+..++-+|++|++..-+
T Consensus 120 ~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~ 162 (500)
T 3czp_A 120 EGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLK 162 (500)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHH
Confidence 2322 2 22221 22 234567888899999887644
No 68
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=21.63 E-value=1.3e+02 Score=22.29 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=25.6
Q ss_pred eecEEEecccCcCc--ccHHHHHHHHHhcCCeeeee
Q 043319 17 KYDVFVSFRGEDTQ--DNFTSHLYSTLCRQNIQTFI 50 (164)
Q Consensus 17 ~ydVFISy~~~D~~--~~f~~~L~~~L~~~gi~vf~ 50 (164)
..-||+.|...|.- ......+.+.|++.|+.+-+
T Consensus 183 ~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~ 218 (246)
T 4f21_A 183 GLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEY 218 (246)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEE
Confidence 34589999887753 45678888999999987644
No 69
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=21.37 E-value=2.4e+02 Score=25.06 Aligned_cols=69 Identities=14% Similarity=0.107 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhhcceeeeEEE
Q 043319 32 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFY 111 (164)
Q Consensus 32 ~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPVfy 111 (164)
..+..|.++|+++|+.|..... ..+.+...-.++++..+|+|-+-. ..++...++. ...=||||+
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~s------~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~----~~~~iPVFl 81 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPND------RDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISK----MNENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCSS------HHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHH----HCTTCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEeCC------HHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHH----hCCCCCEEE
Confidence 4678899999999999977553 222232333567899999985542 1333333332 235689998
Q ss_pred eeCC
Q 043319 112 RVDP 115 (164)
Q Consensus 112 ~v~p 115 (164)
-.+.
T Consensus 82 ~~~~ 85 (715)
T 3n75_A 82 FANT 85 (715)
T ss_dssp ECCT
T ss_pred EecC
Confidence 5444
No 70
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=21.00 E-value=65 Score=20.72 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhhcccc
Q 043319 138 VNTEELRSWRNALKEAATLSG 158 (164)
Q Consensus 138 ~~~~~~~~W~~Al~~v~~~~G 158 (164)
.+++..+.|..||..+....+
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~ 112 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEG 112 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHhccc
Confidence 457889999999999887654
No 71
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=20.58 E-value=35 Score=21.54 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=21.6
Q ss_pred hhhcCCeEEEEeecCccCchhHHHHHHHHHHhh
Q 043319 67 AIEASDISVIVFSESYASSRWCLDELVKILDCK 99 (164)
Q Consensus 67 aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~ 99 (164)
-+.++.++++|+|++---..||-..+..++++.
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 467899999999987544444444455555543
No 72
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=20.24 E-value=1.7e+02 Score=25.93 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=38.0
Q ss_pred ecEEEecccCc-CcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeec
Q 043319 18 YDVFVSFRGED-TQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSE 80 (164)
Q Consensus 18 ydVFISy~~~D-~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~ 80 (164)
++|+|---+++ .-...+..|.+.|++.|++|.+|.+ +..+...+..+-..---.++++.+
T Consensus 560 ~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~---~~sigkk~k~Ad~~G~p~~IiIG~ 620 (693)
T 2zt5_A 560 FKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS---SGSIGRRYARTDEIGVAFGVTIDF 620 (693)
T ss_dssp CSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC---CSCHHHHHHHHHHTTCCEEEEECH
T ss_pred CeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEEcc
Confidence 78887654443 2357889999999999999999875 233444444443322234444544
No 73
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=20.17 E-value=1.2e+02 Score=25.80 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=37.5
Q ss_pred ecEEEeccc-C-cCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhh-cCCeEEEEeecC
Q 043319 18 YDVFVSFRG-E-DTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIE-ASDISVIVFSES 81 (164)
Q Consensus 18 ydVFISy~~-~-D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~-~S~~~Ivv~S~~ 81 (164)
++|+|---+ + +.....+..|.+.|++.|++|-+|.+ +..+...+..|-. +... ++|+.++
T Consensus 471 ~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~-~iivG~~ 533 (572)
T 2j3l_A 471 FDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPI-RITVGKK 533 (572)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSE-EEEECGG
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCE-EEEEccc
Confidence 788876543 2 22246788999999999999999875 2344444544433 3444 4445444
Done!