BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043321
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/471 (31%), Positives = 230/471 (48%), Gaps = 61/471 (12%)
Query: 124 VNQALTFFDAQKSGNYPNYSPVKFRGNSGMQDGKVSNLNADLVGGFYDSGNNIKFSFPTA 183
+ +L F++AQ+SG P V +R +S + D + DL GG++D+G+ +KF FP A
Sbjct: 9 LRDSLLFYEAQRSGRLPADQKVTWRKDSALND--QGDQGQDLTGGYFDAGDFVKFGFPMA 66
Query: 184 YAVTILSWSVIEYQEKYAEIGELNHVKDIIKWGSDYLLKVGSTGND-----TKVSNDINC 238
Y T+L+W +I+++ Y+ G L+ + +KW +DY +K ++ N+ + D
Sbjct: 67 YTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGDADHAF 126
Query: 239 WQRPEDMSYVRPVSVCDST--ASDLAGEIIAALSAASIVFKD-EIMYSGELIKAAGKLYE 295
W RPEDM+ RP D++ SDLAGE AAL+AASIVF++ + YS L+ A +L++
Sbjct: 127 WGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFD 186
Query: 296 VTSREDPGRKQGIYTKVDACGGEARDYYNSTSFIDELVWGGTWLFFATGNNSYLAYATER 355
+ +G Y+ +AR++Y S + DELVW WL+ AT +N+YL A
Sbjct: 187 FAN-----NYRGKYSDSIT---DARNFYASADYRDELVWAAAWLYRATNDNTYLNTAESL 238
Query: 356 FKAAEDEETESEKGIFYWNNKXXXXXXXXXXXXFFRDLGYPYEGALRSSSSRTEILMCSY 415
+ ++ ++ G W++K G A ++ + + SY
Sbjct: 239 Y---DEFGLQNWGGGLNWDSKVS---------------GVQVLLAKLTNKQAYKDTVQSY 280
Query: 416 LSDHIFNKTQGGLILLRPGSGGALEFAATASFLSKXXXXXXXXXXXXGGSCGNDGFSLQM 475
++ I N+ + LL G L AA A+F+ G S
Sbjct: 281 VNYLINNQQKTPKGLLYIDMWGTLRHAANAAFIMLEAAEL--------------GLSASS 326
Query: 476 LRRFSISQVHYILGDNPMKMSYMVGFGDKYPYQVHHRSASIPWDDGQHYTCAEGDRWLYS 535
R+F+ +Q+ Y LGD S++ GFG P + HHRS+S P TC W
Sbjct: 327 YRQFAQTQIDYALGDG--GRSFVCGFGSNPPTRPHHRSSSCP---PAPATC----DWNTF 377
Query: 536 KEPNPN--LLVGAMVAGPDIFDNFSDERDKPWFTEPSIASNAGLVAALIAL 584
P+PN +L GA+V GPD DN+ D+R E + NAG +AL AL
Sbjct: 378 NSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAAL 428
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 185 bits (469), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 230/488 (47%), Gaps = 68/488 (13%)
Query: 116 PTKNLTLAVNQALTFFDAQKSGNYPNYSPVKFRGNSGMQDGKVSNLNADLVGGFYDSGNN 175
P N A+ +++ F++AQ+SG P + V +RG+SG+ DG +++ DL GG+YD+G++
Sbjct: 2 PAFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDG--ADVGLDLTGGWYDAGDH 59
Query: 176 IKFSFPTAYAVTILSWSVIEYQEKYAEIGELNHVKDIIKWGSDYLLKVGSTGNDTKVS-- 233
+KF FP A+ T+L+W IE E Y G++ ++KD ++W +DY +K + N V
Sbjct: 60 VKFGFPMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVG 119
Query: 234 ---NDINCWQRPEDMSYVRPVSVCDST--ASDLAGEIIAALSAASIVF-KDEIMYSGELI 287
D W E M RP D + SD+A E AA++A+SIVF D+ Y+ L+
Sbjct: 120 DGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLV 179
Query: 288 KAAGKLYEVTSREDPGRKQGIYTKVDACGGEARDYYNSTS-FIDELVWGGTWLFFATGNN 346
+ A +LY +G+Y+ G +YNS S + DELVWG WL+ ATG++
Sbjct: 180 QHAKQLYTFAD-----TYRGVYSDCVPAGA----FYNSWSGYQDELVWGAYWLYKATGDD 230
Query: 347 SYLA---YATERFKAAEDEETESEKGIFYWNNKXXXXXXXXXXXXFFRDLGYPYEGALRS 403
SYLA Y + + + S + W++K Y +
Sbjct: 231 SYLAKAEYEYDFLSTEQQTDLRSYRWTIAWDDKSYGT----------------YVLLAKE 274
Query: 404 SSSRTEILMCSYLSDHIFNKTQGGLILLRPG------SGGALEFAATASFLSKXXXXXXX 457
+ + I + D+ G + PG + GAL +AA +F++
Sbjct: 275 TGKQKYIDDANRWLDYWTVGVNGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVI- 333
Query: 458 XXXXXGGSCGNDGFSLQMLRRFSISQVHYILGDNPMKMSYMVGFGDKYPYQVHHRSASIP 517
+D Q F++ Q++Y LGDNP SY+VGFG+ P HHR+A
Sbjct: 334 ----------DDPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGS 383
Query: 518 WDDGQHYTCAEGDRWLYSKEPNPNLLVGAMVAGP-DIFDNFSDERDKPWFTEPSIASNAG 576
W D + S N ++L GA+V GP D ++D+R E + NAG
Sbjct: 384 WTDS-----------IASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAG 432
Query: 577 LVAALIAL 584
+AL L
Sbjct: 433 FSSALAML 440
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/508 (28%), Positives = 228/508 (44%), Gaps = 83/508 (16%)
Query: 106 FVPHKHHPHSPTK----NLTLAVNQALTFFDAQKSGNYPNYS-PVKFRGNSGMQDGKVSN 160
++P + P P N A+ +A+ F++ Q+SG + + + +RG+SG+ DGK +
Sbjct: 8 YLPEEEIPDQPPATGAFNYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAG 67
Query: 161 LNADLVGGFYDSGNNIKFSFPTAYAVTILSWSVIEYQEKYAEIGELNHVKDIIKWGSDYL 220
+ DL GG+YD+G+++KF+ P +Y+ +L W+V EY++ + + G+ NH+ + IKW DY
Sbjct: 68 I--DLTGGWYDAGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYF 125
Query: 221 LKVGSTGND--TKVSN---DINCWQRPEDMSYVRPVSVCD--STASDLAGEIIAALSAAS 273
+K + +V + D W E M RP D S S + E AAL+ AS
Sbjct: 126 IKCHPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIAS 185
Query: 274 IVFKD-EIMYSGELIKAAGKLYEV--TSREDPGRKQGIYTKVDACGGEARDYYNSTS-FI 329
I+FK + YS E +K A +L+E T++ D G YT A +YNS S F
Sbjct: 186 IIFKKVDGEYSKECLKHAKELFEFADTTKSDDG-----YTA-------ANGFYNSWSGFY 233
Query: 330 DELVWGGTWLFFATGNNSYLAYATERFKAAEDEETESEKGIFYWNNKXXXXXXXXXXXXF 389
DEL W WL+ AT ++SYL A E+ S+K W +
Sbjct: 234 DELSWAAVWLYLATNDSSYLDKA----------ESYSDK----WGYEPQTNIPKYKWAQC 279
Query: 390 FRDLGYPY----------EGALRSSSSRTEILMCSYLSDHIFNKTQGGLILLRPGSGGAL 439
+ D+ Y G + + R + + T GL L G+L
Sbjct: 280 WDDVTYGTYLLLARIKNDNGKYKEAIERHLDWWTTGYNGERITYTPKGLAWLD--QWGSL 337
Query: 440 EFAATASFLSKXXXXXXXXXXXXGGSCGNDGFSLQMLRRFSISQVHYILGDNPMKMSYMV 499
+A T +FL+ D + F+ SQ Y LG S++V
Sbjct: 338 RYATTTAFLACVYSDWE----------NGDKEKAKTYLEFARSQADYALGST--GRSFVV 385
Query: 500 GFGDKYPYQVHHRSASIPWDDGQHYTCAEGDRWLYSKEP--NPNLLVGAMVAGPDIFDNF 557
GFG+ P + HHR+A W D Q EP + ++L GA+V GPD DN+
Sbjct: 386 GFGENPPKRPHHRTAHGSWADSQ-------------MEPPEHRHVLYGALVGGPDSTDNY 432
Query: 558 SDERDKPWFTEPSIASNAGLVAALIALH 585
+D+ E + NAG V L ++
Sbjct: 433 TDDISNYTCNEVACDYNAGFVGLLAKMY 460
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 222/485 (45%), Gaps = 84/485 (17%)
Query: 117 TKNLTLAVNQALTFFDAQKSGNYPNYSPV-KFRGNSGMQDGKVSNLNADLVGGFYDSGNN 175
T + + A+ ++ FFDA K G + V +RG DG S++ DL GG++D+G++
Sbjct: 3 THDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDG--SDVGVDLTGGYHDAGDH 60
Query: 176 IKFSFPTAYAVTILSWSVIEYQEKYAEIGELNHVKDIIKWGSDYLLKVGSTGNDTKV--- 232
+KF P Y+ IL WS+ E++E + G + +K+ +DY LK S N T
Sbjct: 61 VKFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLK--SHPNSTTFYYQ 118
Query: 233 ----SNDINCWQRPEDMSYVRPV---SVCDSTASDLAGEIIAALSAASIVFKD-EIMYSG 284
+ D W PE+ + RP + S ASD+ E AAL+ + +K+ + Y+
Sbjct: 119 VGEGNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYAT 178
Query: 285 ELIKAAGKLYEVTSREDPGRKQGIYTKVDACGGEARDYYNSTSFIDELVWGGTWLFFATG 344
+ + AA +LY + QG+ G + +Y +TSF D+L W TWL+ AT
Sbjct: 179 KCLNAAKELYAMGKAN-----QGV--------GNGQSFYQATSFGDDLAWAATWLYTATN 225
Query: 345 NNSYLAYATERFKAAE--DEETESEKGIFYWNNKXXXXXXXXXXXXFFRDLGYPYEGALR 402
+++Y+ A + +E +K W+ D+ P ALR
Sbjct: 226 DSTYITDAEQFITLGNTMNENKMQDKWTMCWD-----------------DMYVP--AALR 266
Query: 403 -SSSSRTEILMCSYLSDHIFNKTQ-----GGLILLRPGSGGALEFAATASFLSKXXXXXX 456
+ + +I + + + KTQ GGL L + G L +AA S +
Sbjct: 267 LAQITGKQIYKDAIEFNFNYWKTQVTTTPGGLKWLS--NWGVLRYAAAESMVMLVYCKQN 324
Query: 457 XXXXXXGGSCGNDGFSLQMLRRFSISQVHYILGDNPMKMSYMVGFGDKYPYQVHHRSASI 516
Q L + QV YILGDNP MSY++G+G + HHR+A+
Sbjct: 325 PD---------------QSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAAN- 368
Query: 517 PWDDGQHYTCAEGDRWLYSKEPNPNLLVGAMVAGPDIFDNFSDERDKPWFTEPSIASNAG 576
YT A GD + +P +LL GA+V GPD D F D+ ++ +TE ++ NAG
Sbjct: 369 ------GYTYANGD----NAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAG 418
Query: 577 LVAAL 581
LV L
Sbjct: 419 LVGVL 423
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 144/498 (28%), Positives = 221/498 (44%), Gaps = 69/498 (13%)
Query: 106 FVPHKHHPHSPTKNLTLAVNQALTFFDAQKSGNYPNYSPVKFRGNSGMQDGKVSNLNADL 165
VP H S + N A+ +A+ F++ Q SG PN+ +RG+S ++DG+ + L DL
Sbjct: 14 LVPRGSHMASGSFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGL--DL 71
Query: 166 VGGFYDSGNNIKFSFPTAYAVTILSWSVIEYQEKYAEIGELNHVKDIIKWGSDYLLKVG- 224
GG++D+G+++KF+ P +Y T+LSW+V EY++ + + G+L H+ + I+W +DY +K
Sbjct: 72 TGGWFDAGDHVKFNLPMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHP 131
Query: 225 -------STGNDTKVSNDINCWQRPEDMSYVRP-VSVCDST-ASDLAGEIIAALSAASIV 275
G+ +K D W E M RP V S+ S + E A+L+AASIV
Sbjct: 132 SKYVYYYQVGDGSK---DHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIV 188
Query: 276 FKDE-IMYSGELIKAAGKLYEVTSREDPGRKQGIYTKVDACGGEARDYYNSTS-FIDELV 333
KD + ++ A +LYE TK DA A YYNS S F DEL
Sbjct: 189 LKDRNPTKAATYLQHAKELYEFAEV----------TKSDAGYTAANGYYNSWSGFYDELS 238
Query: 334 WGGTWLFFATGNNSYLAYA---TERFKAAEDEETESEKGIFYWN---NKXXXXXXXXXXX 387
W WL+ AT +++YL A + + T K W+ N
Sbjct: 239 WAAVWLYLATNDSTYLTKAESYVQNWPKISGSNTIDYKWAHCWDDVHNGAALLLAKITGK 298
Query: 388 XFFRDLGYPYEGALRSSSSRTEILMCSYLSDHIFNKTQGGLILLRPGSGGALEFAATASF 447
++ + S + Y + I T GL L G+L +A T +F
Sbjct: 299 DIYKQI----------IESHLDYWTTGYNGERI-KYTPKGLAWLD--QWGSLRYATTTAF 345
Query: 448 LSKXXXXXXXXXXXXGGSCGNDGFSLQMLRRFSISQVHYILGDNPMKMSYMVGFGDKYPY 507
L+ G ++ R+F SQ+ Y LG S++VGFG P
Sbjct: 346 LAFVYSDW----------VGCPSTKKEIYRKFGESQIDYALGS--AGRSFVVGFGTNPPK 393
Query: 508 QVHHRSASIPWDDGQHYTCAEGDRWLYSKEPNPNLLVGAMVAGPDIFDNFSDERDKPWFT 567
+ HHR+A W D Q + + L GA+V GP D+++D+
Sbjct: 394 RPHHRTAHSSWADSQSIPSY-----------HRHTLYGALVGGPGSDDSYTDDISNYVNN 442
Query: 568 EPSIASNAGLVAALIALH 585
E + NAG V AL ++
Sbjct: 443 EVACDYNAGFVGALAKMY 460
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 224/489 (45%), Gaps = 74/489 (15%)
Query: 117 TKNLTLAVNQALTFFDAQKSGNYPNYSPVKFRGNSGMQDGKVSNLNADLVGGFYDSGNNI 176
T N A+ +++ F++ Q+SG+ P +R +SGM+DG S++ DL GG+YD+G+++
Sbjct: 3 TYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDG--SDVGVDLTGGWYDAGDHV 60
Query: 177 KFSFPTAYAVTILSWSVIEYQEKYAEIGELNHVKDIIKWGSDYLLKVGST--------GN 228
KF+ P +Y +L+WS+ E ++ Y + G+ ++ D IKW +DY +K T G+
Sbjct: 61 KFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGD 120
Query: 229 DTKVSNDINCWQRPEDMSYVRPVSVCDST--ASDLAGEIIAALSAASIVFK-DEIMYSGE 285
K D + W E M RP D++ S + A+L++A++VFK + Y+ +
Sbjct: 121 GGK---DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEK 177
Query: 286 LIKAAGKLYEVTSREDPGRKQGIYTKVDACGGEARDYYNSTSFIDELVWGGTWLFFATGN 345
I A L+++ + K DA A YY+S+SF D+L W WL+ AT +
Sbjct: 178 CISHAKNLFDMADK----------AKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATND 227
Query: 346 NSYLAYATERFKAAEDEETESEKGIFYWNNKXXXXXXXXXXXXFFRDLGYPYEGALRSSS 405
++YL A E + +E +++ + W + D+ Y E L +
Sbjct: 228 STYLDKA-ESYVPNWGKEQQTDIIAYKWGQX-------------WDDVHYGAELLLAKLT 273
Query: 406 SRT----EILM-----CSYLSDHIFNKTQGGLILLRPGSGGALEFAATASFLSKXXXXXX 456
++ I M + ++ + T GL L G+L A T +FL+
Sbjct: 274 NKQLYKDSIEMNLDFWTTGVNGTRVSYTPKGLAWLF--QWGSLRHATTQAFLAGVYAEWE 331
Query: 457 XXXXXXGGSCGNDGFSLQMLRRFSISQVHYILGDNPMKMSYMVGFGDKYPYQVHHRSASI 516
G + + + F SQ+ Y LG S++VG+G P HHR+A
Sbjct: 332 ----------GCTPSKVSVYKDFLKSQIDYALGST--GRSFVVGYGVNPPQHPHHRTAHG 379
Query: 517 PWDDGQHYTCAEGDRWLYSKEPNPNLLVGAMVAGPDIFDNFSDERDKPWFTEPSIASNAG 576
W D + S + + + GA+V GPD D ++DE + E + NAG
Sbjct: 380 SWTDQ-----------MTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAG 428
Query: 577 LVAALIALH 585
AL ++
Sbjct: 429 FTGALAKMY 437
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 132/489 (26%), Positives = 224/489 (45%), Gaps = 74/489 (15%)
Query: 117 TKNLTLAVNQALTFFDAQKSGNYPNYSPVKFRGNSGMQDGKVSNLNADLVGGFYDSGNNI 176
T N A+ +++ F++ Q+SG+ P +R +SGM+DG S++ DL GG+YD+G+++
Sbjct: 3 TYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDG--SDVGVDLTGGWYDAGDHV 60
Query: 177 KFSFPTAYAVTILSWSVIEYQEKYAEIGELNHVKDIIKWGSDYLLKVGST--------GN 228
KF+ P +Y +L+WS+ E ++ Y + G+ ++ D IKW +DY +K T G+
Sbjct: 61 KFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGD 120
Query: 229 DTKVSNDINCWQRPEDMSYVRPVSVCDST--ASDLAGEIIAALSAASIVFK-DEIMYSGE 285
K D + W E M RP D++ S + A+L++A++VFK + Y+ +
Sbjct: 121 GGK---DHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEK 177
Query: 286 LIKAAGKLYEVTSREDPGRKQGIYTKVDACGGEARDYYNSTSFIDELVWGGTWLFFATGN 345
I A L+++ + K DA A YY+S+SF D+L W WL+ AT +
Sbjct: 178 CISHAKNLFDMADK----------AKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATND 227
Query: 346 NSYLAYATERFKAAEDEETESEKGIFYWNNKXXXXXXXXXXXXFFRDLGYPYEGALRSSS 405
++YL A E + +E +++ + W + D+ Y E L +
Sbjct: 228 STYLDKA-ESYVPNWGKEQQTDIIAYKWGQ-------------CWDDVHYGAELLLAKLT 273
Query: 406 SRT----EILM-----CSYLSDHIFNKTQGGLILLRPGSGGALEFAATASFLSKXXXXXX 456
++ I M + ++ + T GL L G+L A T +FL+
Sbjct: 274 NKQLYKDSIEMNLDFWTTGVNGTRVSYTPKGLAWLF--QWGSLRHATTQAFLAGVYAEWE 331
Query: 457 XXXXXXGGSCGNDGFSLQMLRRFSISQVHYILGDNPMKMSYMVGFGDKYPYQVHHRSASI 516
G + + + F SQ+ Y LG S++VG+G P HHR+A
Sbjct: 332 ----------GCTPSKVSVYKDFLKSQIDYALGST--GRSFVVGYGVNPPQHPHHRTAHG 379
Query: 517 PWDDGQHYTCAEGDRWLYSKEPNPNLLVGAMVAGPDIFDNFSDERDKPWFTEPSIASNAG 576
W D + S + + + GA+V GPD D ++DE + E + NAG
Sbjct: 380 SWTDQ-----------MTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNEIACDYNAG 428
Query: 577 LVAALIALH 585
AL ++
Sbjct: 429 FTGALAKMY 437
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 184/450 (40%), Gaps = 60/450 (13%)
Query: 155 DGKVSNLNADLVGGFYDSGNNIKFSFPTAYAVTILSWSVIEYQEKYAEIGELNHVKDIIK 214
DGKV D+ GGF+D+G+++KF P AYA + + W E+++++ G+ H + I++
Sbjct: 105 DGKV-----DVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVILR 159
Query: 215 WGSDYLLKV---GSTGNDTKVSNDIN-------CWQRPEDMSYVRP--VSVCDSTASDLA 262
+ +DY ++ ++GN + + W PE+ + R + +D+
Sbjct: 160 YFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDII 219
Query: 263 GEIIAALSAASIVFKD-EIMYSGELIKAAGKLYEVTSREDPGRKQGIYTKVDACGGEARD 321
A+L+ + FKD + Y+ + + A L++ + G QG +
Sbjct: 220 SATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQG--------EDGPKG 271
Query: 322 YYNSTSFIDELVWGGTWLFFATGNNSYLAYATERFKAAEDEETESEKGIFYWNNKXXXXX 381
YY S+ + D+ W WL+ AT N YL A + + + I WN+
Sbjct: 272 YYGSSKWQDDYCWAAAWLYLATQNEHYLDEAFKYY-----DYYAPPGWIHCWNDVWSGTA 326
Query: 382 XXXXXXXFFRDL-GYPYEGALRSSSSRTEILMCSYLS--DHIFNKTQGGLILLRPGSGGA 438
D +E + +S++ + + + +K GG I + PG
Sbjct: 327 CILAEINDLYDKDSQNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVF 386
Query: 439 LEFAATASFLSKXXXXXXXXXXXXGGSCGNDGFSLQMLRRFSISQVHYILGDNPMKMSYM 498
L +A + + G + ++ SQ+ Y+LG NP+ Y+
Sbjct: 387 LNQWGSARYNTAAQLIALVYDKHHGDTPSK-------YANWARSQMDYLLGKNPLNRCYV 439
Query: 499 VGFGD---KYPYQVHHRSASIPWDDGQHYTCAEGDRWLYSKEPNPNLLVGAMVAGPDIFD 555
VG+ KYP HHR+AS G + P+ +L GA+V GPD D
Sbjct: 440 VGYSSNSVKYP---HHRAAS-------------GLKDANDSSPHKYVLYGALVGGPDASD 483
Query: 556 NFSDERDKPWFTEPSIASNAGLVAALIALH 585
D + + E +I NA V A L+
Sbjct: 484 QHVDRTNDYIYNEVAIDYNAAFVGACAGLY 513
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 486 YILGDNPMKMSYMVGFGDKYPYQVHHRSASIPWDDGQHYTCAEGDRWLYSKEPNPNLLVG 545
Y+ G NP+ Y+ GFG + HHR + DD H P P ++VG
Sbjct: 437 YLFGANPLGQCYVTGFGQRPVRHPHHRPSVA--DDVDH--------------PVPGMVVG 480
Query: 546 ------------AMVAGPDIFDNFSDERDKPWFTEPSIASNAGLVAALIAL 584
A +AG + + D +D E ++ N+ V + AL
Sbjct: 481 GPNRHLQDEIARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIAAL 531
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 480 SISQVHYILGDNPMKMSYMVGFGDKYPYQVHHRSASIPWDDGQHYTCAEGDRWLYSKEPN 539
++ + ++ G N SY+ G G P H R + A+G W EP
Sbjct: 476 ALDAISHVFGRNYYNRSYVTGLGINPPMNPHDRRSG-----------ADG-IW----EPW 519
Query: 540 PNLLVGAMVAGPDIFDNFSDERDKPWFTEPSIASNAGLVAAL 581
P LVG GP ++ D +D E +I NA L+ AL
Sbjct: 520 PGYLVGGGWPGP---KDWVDIQDSYQTNEIAINWNAALIYAL 558
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 148 RGNSGMQDGKVSNLNADLVGGFY-----DSGN-NIKFSFPTAYAVTILSWSVIEY-QEKY 200
RGNSG G + NLN +L+G D GN I F+ P+ V L+ ++EY Q K
Sbjct: 207 RGNSG---GALVNLNGELIGINTAILAPDGGNIGIGFAIPSNM-VKNLTSQMVEYGQVKR 262
Query: 201 AEIG----ELN 207
E+G ELN
Sbjct: 263 GELGIMGTELN 273
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 15/71 (21%)
Query: 148 RGNSGMQDGKVSNLNADLVGGFY-----DSGN-NIKFSFPTAYAVTILSWSVIEY-QEKY 200
RGNSG G + NLN +L+G D GN I F+ P+ V L+ ++EY Q K
Sbjct: 207 RGNSG---GALVNLNGELIGINTAILAPDGGNIGIGFAIPSNM-VKNLTSQMVEYGQVKR 262
Query: 201 AEIG----ELN 207
E+G ELN
Sbjct: 263 GELGIMGTELN 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,992,276
Number of Sequences: 62578
Number of extensions: 815464
Number of successful extensions: 1902
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1854
Number of HSP's gapped (non-prelim): 22
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)