Query 043324
Match_columns 788
No_of_seqs 340 out of 2412
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-153 3E-158 1371.4 81.9 763 2-779 25-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 7E-126 2E-130 1115.4 54.1 747 2-780 5-768 (769)
3 PRK03562 glutathione-regulated 100.0 2.3E-49 4.9E-54 463.1 45.2 397 19-446 5-413 (621)
4 PRK10669 putative cation:proto 100.0 6.7E-49 1.4E-53 457.7 44.1 410 20-457 7-437 (558)
5 PRK03659 glutathione-regulated 100.0 1.9E-48 4.2E-53 454.7 45.3 400 19-446 5-413 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 4E-45 8.7E-50 405.6 42.6 378 17-416 4-389 (397)
7 PRK05326 potassium/proton anti 100.0 2E-39 4.4E-44 377.8 36.9 381 17-416 4-392 (562)
8 COG4651 RosB Kef-type K+ trans 100.0 6.5E-35 1.4E-39 293.1 30.1 364 22-409 9-386 (408)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.4E-39 3.1E-44 363.2 -4.3 366 26-412 3-379 (380)
10 TIGR00932 2a37 transporter, mo 100.0 1.9E-34 4.1E-39 307.1 31.3 265 29-313 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 7.2E-26 1.6E-30 261.2 38.3 363 7-382 2-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.2E-25 4.8E-30 256.7 37.7 327 26-375 5-363 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 4.4E-21 9.5E-26 215.2 39.6 340 19-378 6-368 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 6.1E-22 1.3E-26 209.1 28.2 380 17-417 5-391 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 1.5E-20 3.2E-25 216.6 38.1 366 31-411 21-416 (559)
16 PRK14853 nhaA pH-dependent sod 99.8 5.1E-16 1.1E-20 169.8 34.3 302 80-413 63-397 (423)
17 KOG4505 Na+/H+ antiporter [Ino 99.7 1.2E-15 2.6E-20 156.5 24.9 346 19-378 14-382 (467)
18 KOG1965 Sodium/hydrogen exchan 99.6 1.9E-13 4E-18 152.1 25.8 378 24-414 40-457 (575)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 4.2E-12 9E-17 136.7 23.0 270 80-379 53-344 (373)
20 PRK14856 nhaA pH-dependent sod 99.2 2E-09 4.4E-14 117.9 22.0 297 80-409 69-429 (438)
21 PRK09560 nhaA pH-dependent sod 99.1 1.4E-08 3E-13 109.8 22.4 297 80-407 60-381 (389)
22 PRK11175 universal stress prot 99.1 2.3E-09 5E-14 116.1 16.6 186 435-645 5-198 (305)
23 PRK14854 nhaA pH-dependent sod 99.1 2.3E-08 5E-13 107.5 23.3 297 80-407 57-375 (383)
24 PRK09561 nhaA pH-dependent sod 99.1 1.5E-08 3.2E-13 109.4 21.8 270 80-379 60-351 (388)
25 PRK14855 nhaA pH-dependent sod 99.1 1.7E-08 3.7E-13 110.2 22.2 293 80-408 64-411 (423)
26 COG3004 NhaA Na+/H+ antiporter 98.9 1.7E-07 3.6E-12 97.2 21.2 288 87-408 70-383 (390)
27 PF06965 Na_H_antiport_1: Na+/ 98.9 6.3E-09 1.4E-13 112.2 11.0 274 80-383 56-355 (378)
28 cd01988 Na_H_Antiporter_C The 98.9 1.2E-08 2.7E-13 95.5 9.9 131 435-590 1-131 (132)
29 KOG1966 Sodium/hydrogen exchan 98.6 4.9E-08 1.1E-12 108.8 5.9 327 31-373 54-406 (670)
30 PF05684 DUF819: Protein of un 98.2 0.002 4.2E-08 71.6 29.2 294 42-383 24-350 (378)
31 PRK12460 2-keto-3-deoxyglucona 98.0 0.001 2.2E-08 70.6 22.4 257 88-416 51-309 (312)
32 cd01987 USP_OKCHK USP domain i 97.8 7.2E-05 1.6E-09 69.4 8.1 121 435-589 1-122 (124)
33 cd01989 STK_N The N-terminal d 97.8 8.6E-05 1.9E-09 71.0 8.2 143 435-594 1-146 (146)
34 PF03812 KdgT: 2-keto-3-deoxyg 97.7 0.0025 5.5E-08 67.2 18.7 257 88-414 51-313 (314)
35 PF00582 Usp: Universal stress 97.6 0.00029 6.2E-09 65.5 9.2 133 608-774 3-139 (140)
36 PRK15456 universal stress prot 97.6 0.00018 3.9E-09 68.5 7.8 132 435-589 4-140 (142)
37 PF00582 Usp: Universal stress 97.6 7.2E-05 1.6E-09 69.7 4.9 133 435-590 4-139 (140)
38 cd01988 Na_H_Antiporter_C The 97.5 0.0015 3.2E-08 60.9 12.7 130 609-775 1-132 (132)
39 COG0786 GltS Na+/glutamate sym 97.5 0.015 3.3E-07 63.2 20.9 157 218-376 170-360 (404)
40 PRK15005 universal stress prot 97.4 0.00045 9.7E-09 65.8 8.2 135 435-590 4-143 (144)
41 COG3180 AbrB Putative ammonia 97.4 0.3 6.6E-06 53.0 29.9 331 21-414 8-350 (352)
42 cd00293 USP_Like Usp: Universa 97.3 0.00067 1.5E-08 62.3 7.5 129 435-589 1-129 (130)
43 cd01989 STK_N The N-terminal d 97.3 0.0024 5.2E-08 60.9 10.8 139 609-776 1-145 (146)
44 PRK15118 universal stress glob 97.2 0.0012 2.7E-08 62.8 8.1 133 435-590 5-137 (144)
45 PRK11175 universal stress prot 97.1 0.0012 2.6E-08 71.4 8.1 144 434-595 153-303 (305)
46 PRK09982 universal stress prot 97.1 0.0016 3.6E-08 62.0 8.1 132 435-590 5-137 (142)
47 PF03616 Glt_symporter: Sodium 97.1 0.31 6.7E-06 54.2 26.6 87 265-353 247-336 (368)
48 PRK15005 universal stress prot 97.0 0.0083 1.8E-07 57.0 11.9 38 608-645 3-42 (144)
49 PRK10116 universal stress prot 96.9 0.0029 6.3E-08 60.0 7.9 38 608-645 4-41 (142)
50 TIGR00210 gltS sodium--glutama 96.8 1.3 2.8E-05 49.7 30.6 92 264-359 244-338 (398)
51 PRK10116 universal stress prot 96.8 0.0045 9.9E-08 58.7 7.7 133 435-590 5-137 (142)
52 PRK15118 universal stress glob 96.7 0.0049 1.1E-07 58.7 7.9 38 608-645 4-41 (144)
53 TIGR00793 kdgT 2-keto-3-deoxyg 96.7 0.048 1E-06 57.5 15.2 257 88-414 51-313 (314)
54 cd00293 USP_Like Usp: Universa 96.7 0.014 3E-07 53.4 10.2 37 609-645 1-37 (130)
55 PRK05274 2-keto-3-deoxyglucona 96.5 0.12 2.7E-06 56.1 17.3 137 270-416 178-317 (326)
56 cd01987 USP_OKCHK USP domain i 96.5 0.02 4.3E-07 52.8 9.8 37 609-645 1-37 (124)
57 PF03601 Cons_hypoth698: Conse 96.5 1.3 2.8E-05 47.9 24.9 102 39-156 22-124 (305)
58 PRK09982 universal stress prot 96.4 0.016 3.4E-07 55.3 9.0 38 608-645 4-41 (142)
59 TIGR00698 conserved hypothetic 96.3 2.2 4.7E-05 46.7 28.6 85 38-130 26-110 (335)
60 PRK15456 universal stress prot 96.3 0.046 1E-06 51.9 11.3 135 608-774 3-141 (142)
61 TIGR00932 2a37 transporter, mo 96.2 0.11 2.4E-06 55.3 15.0 142 252-401 3-146 (273)
62 COG0385 Predicted Na+-dependen 96.1 2.7 5.7E-05 45.4 27.6 138 84-234 40-190 (319)
63 PRK03562 glutathione-regulated 96.1 0.13 2.9E-06 61.3 16.3 117 246-367 10-127 (621)
64 PF03390 2HCT: 2-hydroxycarbox 95.9 2.2 4.9E-05 47.5 23.6 92 290-383 299-393 (414)
65 TIGR00841 bass bile acid trans 95.9 3.1 6.8E-05 44.6 24.7 45 333-378 204-249 (286)
66 PF03601 Cons_hypoth698: Conse 95.8 0.27 5.8E-06 53.1 15.8 173 249-427 6-186 (305)
67 PF05145 AmoA: Putative ammoni 95.8 3.7 8.1E-05 44.7 29.5 157 246-413 157-316 (318)
68 COG0475 KefB Kef-type K+ trans 95.8 0.23 5E-06 55.9 15.8 151 246-403 11-164 (397)
69 PRK12652 putative monovalent c 95.7 0.054 1.2E-06 59.6 10.2 39 607-645 5-45 (357)
70 COG2855 Predicted membrane pro 95.7 0.098 2.1E-06 56.2 11.6 124 252-379 24-147 (334)
71 PRK03659 glutathione-regulated 95.6 0.47 1E-05 56.5 18.3 108 32-157 226-333 (601)
72 PF03956 DUF340: Membrane prot 95.6 0.11 2.3E-06 52.1 10.9 127 47-197 2-133 (191)
73 PRK10669 putative cation:proto 95.6 0.29 6.3E-06 57.8 16.5 133 248-388 13-146 (558)
74 PRK05326 potassium/proton anti 95.3 0.21 4.5E-06 59.1 13.8 118 248-368 13-132 (562)
75 PF06826 Asp-Al_Ex: Predicted 95.1 0.67 1.4E-05 45.5 14.4 125 28-168 6-136 (169)
76 TIGR00832 acr3 arsenical-resis 94.9 7.2 0.00016 42.7 25.6 44 332-376 254-298 (328)
77 PF01758 SBF: Sodium Bile acid 94.9 2.8 6.1E-05 41.9 18.6 107 86-203 2-112 (187)
78 TIGR00698 conserved hypothetic 94.8 1 2.2E-05 49.3 16.3 154 250-410 11-175 (335)
79 COG3493 CitS Na+/citrate sympo 94.7 7.2 0.00016 42.6 21.5 84 297-383 326-412 (438)
80 PLN03159 cation/H(+) antiporte 94.6 0.87 1.9E-05 56.2 17.1 43 431-475 628-670 (832)
81 TIGR00844 c_cpa1 na(+)/h(+) an 94.5 0.69 1.5E-05 55.6 15.0 71 296-369 74-146 (810)
82 TIGR01625 YidE_YbjL_dupl AspT/ 94.4 0.25 5.3E-06 47.8 9.2 113 44-170 22-139 (154)
83 PF13593 DUF4137: SBF-like CPA 94.4 9.4 0.0002 41.5 25.4 29 83-111 32-60 (313)
84 TIGR00783 ccs citrate carrier 94.2 2.9 6.4E-05 45.6 17.9 118 264-383 203-326 (347)
85 COG0589 UspA Universal stress 94.1 0.23 5E-06 46.9 8.5 49 536-590 102-150 (154)
86 TIGR03082 Gneg_AbrB_dup membra 93.7 1.7 3.8E-05 42.1 13.8 97 26-136 2-100 (156)
87 PRK03818 putative transporter; 93.2 1.9 4.1E-05 50.7 15.5 128 24-169 11-143 (552)
88 TIGR00831 a_cpa1 Na+/H+ antipo 93.2 0.76 1.7E-05 53.8 12.2 119 248-371 5-124 (525)
89 COG0798 ACR3 Arsenite efflux p 93.0 16 0.00034 39.7 25.8 141 46-202 20-164 (342)
90 TIGR03802 Asp_Ala_antiprt aspa 92.9 0.84 1.8E-05 53.8 12.1 67 38-120 30-96 (562)
91 PRK04972 putative transporter; 92.9 0.67 1.5E-05 54.5 11.2 117 27-168 20-141 (558)
92 TIGR03802 Asp_Ala_antiprt aspa 92.8 3.2 6.9E-05 49.0 16.6 116 40-169 412-531 (562)
93 TIGR03082 Gneg_AbrB_dup membra 91.9 4.7 0.0001 39.1 14.0 122 250-379 4-128 (156)
94 PF03616 Glt_symporter: Sodium 91.3 1 2.2E-05 50.1 9.8 117 296-415 65-187 (368)
95 TIGR00210 gltS sodium--glutama 91.0 11 0.00023 42.4 17.5 164 22-198 222-393 (398)
96 COG5505 Predicted integral mem 90.5 27 0.00058 37.2 27.4 82 297-383 275-356 (384)
97 PRK03818 putative transporter; 90.4 6.9 0.00015 46.1 15.9 108 46-167 403-515 (552)
98 PRK04972 putative transporter; 89.8 3.3 7.2E-05 48.8 12.7 117 41-170 408-527 (558)
99 PRK12652 putative monovalent c 89.1 1 2.2E-05 49.7 7.3 106 434-556 6-122 (357)
100 COG2855 Predicted membrane pro 88.9 39 0.00084 36.8 26.5 103 37-157 31-134 (334)
101 PF05145 AmoA: Putative ammoni 88.4 12 0.00026 40.9 14.9 102 21-136 154-257 (318)
102 TIGR00946 2a69 he Auxin Efflux 88.3 13 0.00028 40.6 15.3 136 40-197 179-315 (321)
103 COG2985 Predicted permease [Ge 87.1 3.4 7.5E-05 46.5 9.7 78 85-171 62-146 (544)
104 COG1346 LrgB Putative effector 86.6 27 0.00059 35.8 14.9 88 315-410 84-171 (230)
105 COG0025 NhaP NhaP-type Na+/H+ 85.5 11 0.00024 42.9 13.3 121 248-372 13-137 (429)
106 PF03956 DUF340: Membrane prot 84.7 6.6 0.00014 39.4 9.7 50 325-375 57-106 (191)
107 PRK04288 antiholin-like protei 84.7 38 0.00083 35.0 15.3 83 322-410 92-174 (232)
108 COG0589 UspA Universal stress 84.5 19 0.00042 33.5 12.7 144 608-777 6-153 (154)
109 TIGR00930 2a30 K-Cl cotranspor 83.3 1.4E+02 0.003 37.8 29.7 136 428-595 570-710 (953)
110 PF03547 Mem_trans: Membrane t 81.8 9.5 0.00021 42.6 10.7 104 269-376 10-116 (385)
111 COG0679 Predicted permeases [G 81.7 83 0.0018 34.1 29.7 134 266-407 168-304 (311)
112 COG0786 GltS Na+/glutamate sym 81.2 24 0.00051 39.1 12.7 102 16-124 219-322 (404)
113 PRK12460 2-keto-3-deoxyglucona 80.9 19 0.00041 38.8 11.7 47 87-133 197-243 (312)
114 PF00999 Na_H_Exchanger: Sodiu 79.3 0.16 3.5E-06 56.7 -4.6 113 251-367 6-123 (380)
115 PRK04125 murein hydrolase regu 78.3 47 0.001 31.6 12.2 106 17-132 6-115 (141)
116 PF02040 ArsB: Arsenical pump 77.4 1.4E+02 0.003 34.1 21.1 36 159-194 117-152 (423)
117 PRK10490 sensor protein KdpD; 77.1 9.1 0.0002 48.0 9.4 123 432-590 249-372 (895)
118 COG2431 Predicted membrane pro 77.0 53 0.0012 34.6 13.1 77 45-136 108-189 (297)
119 KOG2310 DNA repair exonuclease 76.8 3.8 8.2E-05 46.5 5.2 82 536-620 41-131 (646)
120 COG2985 Predicted permease [Ge 76.4 20 0.00044 40.6 10.7 114 43-170 395-511 (544)
121 PRK10711 hypothetical protein; 76.0 70 0.0015 33.1 13.7 83 322-410 87-169 (231)
122 TIGR00783 ccs citrate carrier 73.3 35 0.00076 37.4 11.4 108 36-156 196-307 (347)
123 PF01889 DUF63: Membrane prote 72.8 1.4E+02 0.0029 31.9 15.5 42 155-196 153-196 (273)
124 TIGR00808 malonate_madM malona 72.0 52 0.0011 33.0 11.0 106 24-136 18-132 (254)
125 COG4651 RosB Kef-type K+ trans 71.7 21 0.00046 38.0 8.8 119 246-371 11-132 (408)
126 TIGR00659 conserved hypothetic 71.4 1.3E+02 0.0028 31.1 15.2 165 214-410 4-168 (226)
127 PRK01658 holin-like protein; V 71.0 89 0.0019 29.0 12.3 100 18-127 4-107 (122)
128 PRK09903 putative transporter 70.7 76 0.0017 34.4 13.6 109 41-169 171-280 (314)
129 COG3329 Predicted permease [Ge 69.3 92 0.002 33.3 12.7 118 265-389 16-135 (372)
130 PRK01821 hypothetical protein; 67.8 1.1E+02 0.0023 28.9 11.9 98 18-125 9-110 (133)
131 TIGR00840 b_cpa1 sodium/hydrog 67.2 69 0.0015 37.9 13.1 76 295-373 67-151 (559)
132 TIGR03136 malonate_biotin Na+- 66.9 20 0.00043 39.2 7.6 113 295-418 102-218 (399)
133 COG3180 AbrB Putative ammonia 65.4 1.4E+02 0.0031 32.8 13.9 124 246-378 11-138 (352)
134 COG1380 Putative effector of m 64.2 1.2E+02 0.0026 28.4 11.3 110 17-136 4-117 (128)
135 PF04172 LrgB: LrgB-like famil 63.8 1.8E+02 0.0039 29.8 13.7 83 322-410 76-158 (215)
136 TIGR00946 2a69 he Auxin Efflux 63.7 2.2E+02 0.0048 30.8 29.4 133 266-408 182-317 (321)
137 PF03390 2HCT: 2-hydroxycarbox 62.6 1.4E+02 0.0031 33.7 13.6 106 38-156 266-374 (414)
138 TIGR01625 YidE_YbjL_dupl AspT/ 62.0 23 0.0005 34.2 6.5 87 267-353 23-115 (154)
139 PF05684 DUF819: Protein of un 60.7 1.1E+02 0.0025 34.1 12.6 95 294-395 54-152 (378)
140 PF03977 OAD_beta: Na+-transpo 60.5 18 0.0004 39.0 5.9 111 296-418 67-181 (360)
141 PRK10490 sensor protein KdpD; 58.4 65 0.0014 40.5 11.4 39 607-645 250-288 (895)
142 PF03547 Mem_trans: Membrane t 58.0 3E+02 0.0065 30.5 21.9 88 266-353 244-335 (385)
143 COG3263 NhaP-type Na+/H+ and K 57.3 69 0.0015 36.1 9.7 109 256-366 22-131 (574)
144 KOG1650 Predicted K+/H+-antipo 56.8 1.1E+02 0.0025 37.6 12.7 87 82-176 310-398 (769)
145 PF01171 ATP_bind_3: PP-loop f 56.5 68 0.0015 31.7 9.1 37 609-645 1-37 (182)
146 COG0679 Predicted permeases [G 55.9 2.3E+02 0.0049 30.7 13.8 103 267-373 11-115 (311)
147 PRK12342 hypothetical protein; 55.9 25 0.00055 36.9 6.1 29 616-645 33-61 (254)
148 PRK10537 voltage-gated potassi 54.6 3.1E+02 0.0068 30.8 14.9 15 433-447 240-254 (393)
149 PRK03359 putative electron tra 54.2 64 0.0014 34.0 8.8 29 617-645 35-64 (256)
150 COG1346 LrgB Putative effector 53.2 2.8E+02 0.006 28.7 16.2 43 91-133 73-115 (230)
151 TIGR00832 acr3 arsenical-resis 52.9 3E+02 0.0066 30.1 14.2 97 307-410 55-156 (328)
152 PF01012 ETF: Electron transfe 52.8 48 0.001 32.1 7.2 27 618-644 15-41 (164)
153 PF03977 OAD_beta: Na+-transpo 50.7 3.7E+02 0.008 29.4 27.3 253 24-322 5-268 (360)
154 PRK01663 C4-dicarboxylate tran 49.9 3E+02 0.0066 31.3 14.0 32 100-131 66-97 (428)
155 TIGR03136 malonate_biotin Na+- 48.2 4.2E+02 0.0092 29.4 24.2 74 246-323 233-306 (399)
156 COG3493 CitS Na+/citrate sympo 48.2 3.9E+02 0.0085 29.7 13.4 109 35-156 281-393 (438)
157 TIGR00793 kdgT 2-keto-3-deoxyg 48.1 91 0.002 33.5 8.6 64 48-125 176-240 (314)
158 COG0385 Predicted Na+-dependen 47.2 2.6E+02 0.0056 30.5 12.1 107 298-411 41-151 (319)
159 cd01984 AANH_like Adenine nucl 46.2 22 0.00048 30.1 3.3 33 610-643 1-33 (86)
160 PF13593 DUF4137: SBF-like CPA 45.9 2.1E+02 0.0046 31.0 11.6 92 268-363 7-99 (313)
161 PF03812 KdgT: 2-keto-3-deoxyg 43.8 67 0.0015 34.6 7.0 63 48-124 176-239 (314)
162 PRK15475 oxaloacetate decarbox 43.7 43 0.00094 36.7 5.5 127 297-430 133-265 (433)
163 PF02601 Exonuc_VII_L: Exonucl 43.5 45 0.00097 36.3 5.9 51 685-736 29-87 (319)
164 PRK15477 oxaloacetate decarbox 43.3 44 0.00095 36.6 5.5 127 297-430 133-265 (433)
165 PRK15476 oxaloacetate decarbox 43.3 44 0.00095 36.6 5.5 127 297-430 133-265 (433)
166 COG2205 KdpD Osmosensitive K+ 43.0 95 0.0021 37.8 8.7 121 431-585 246-366 (890)
167 PF06826 Asp-Al_Ex: Predicted 42.5 2.3E+02 0.005 27.8 10.1 93 264-362 22-120 (169)
168 cd01984 AANH_like Adenine nucl 40.8 33 0.00072 29.0 3.5 49 534-587 35-83 (86)
169 TIGR02432 lysidine_TilS_N tRNA 40.7 29 0.00063 34.3 3.7 37 609-645 1-37 (189)
170 KOG0573 Asparagine synthase [A 40.1 2.1E+02 0.0045 32.4 10.1 78 608-710 251-329 (520)
171 COG3969 Predicted phosphoadeno 38.1 67 0.0015 34.9 5.8 37 608-644 28-65 (407)
172 PF13194 DUF4010: Domain of un 37.4 4.6E+02 0.01 26.7 16.9 67 129-199 9-75 (211)
173 PRK04125 murein hydrolase regu 36.5 3.9E+02 0.0083 25.5 10.6 38 301-340 69-108 (141)
174 PRK05253 sulfate adenylyltrans 35.6 1.3E+02 0.0029 32.5 7.9 37 608-644 28-64 (301)
175 cd01992 PP-ATPase N-terminal d 34.3 2.2E+02 0.0048 27.7 8.8 37 609-645 1-37 (185)
176 PF09605 Trep_Strep: Hypotheti 33.4 5E+02 0.011 25.9 15.7 129 216-349 36-181 (186)
177 PRK09903 putative transporter 30.1 7.2E+02 0.016 26.7 30.2 113 289-411 196-310 (314)
178 TIGR02359 thiW thiW protein. L 29.2 5.5E+02 0.012 25.0 13.9 16 45-60 34-49 (160)
179 KOG2718 Na+-bile acid cotransp 29.0 7.9E+02 0.017 27.4 12.5 46 86-132 117-162 (371)
180 COG4792 EscU Type III secretor 28.9 2.5E+02 0.0054 30.1 8.1 16 163-178 208-223 (349)
181 COG1380 Putative effector of m 28.2 3.4E+02 0.0073 25.4 8.1 31 388-418 92-122 (128)
182 COG1570 XseA Exonuclease VII, 28.0 1E+02 0.0022 35.0 5.5 50 686-736 151-205 (440)
183 PRK05274 2-keto-3-deoxyglucona 27.6 5.4E+02 0.012 28.2 11.0 42 89-130 206-247 (326)
184 TIGR02039 CysD sulfate adenyly 26.3 1.8E+02 0.0039 31.4 6.9 36 609-644 21-56 (294)
185 COG2086 FixA Electron transfer 25.5 2E+02 0.0044 30.4 6.9 29 617-645 36-65 (260)
186 PRK04288 antiholin-like protei 25.5 7.7E+02 0.017 25.6 23.1 18 292-309 215-232 (232)
187 TIGR03869 F420-0_ABCperm propo 25.4 9.2E+02 0.02 26.4 17.5 26 35-60 46-71 (325)
188 PF03652 UPF0081: Uncharacteri 24.9 2E+02 0.0043 27.1 6.2 60 533-595 37-97 (135)
189 PRK00286 xseA exodeoxyribonucl 24.8 1.3E+02 0.0027 34.5 5.8 50 686-736 151-204 (438)
190 PF05982 DUF897: Domain of unk 24.0 5.5E+02 0.012 28.1 9.9 153 267-424 1-154 (327)
191 cd01993 Alpha_ANH_like_II This 23.2 1.1E+02 0.0024 29.8 4.4 37 609-645 1-39 (185)
192 PF03686 UPF0146: Uncharacteri 22.6 1.3E+02 0.0029 28.0 4.3 37 523-559 71-107 (127)
193 PF02673 BacA: Bacitracin resi 22.1 3.6E+02 0.0077 28.5 8.1 77 335-413 162-239 (259)
194 TIGR00237 xseA exodeoxyribonuc 21.6 1.5E+02 0.0033 33.8 5.6 50 686-736 145-199 (432)
195 PRK04148 hypothetical protein; 20.7 1.3E+02 0.0029 28.3 4.0 36 525-560 80-115 (134)
196 PRK10660 tilS tRNA(Ile)-lysidi 20.4 6.4E+02 0.014 28.8 10.3 38 608-645 16-54 (436)
197 COG3748 Predicted membrane pro 20.2 7.9E+02 0.017 26.7 9.8 41 296-337 225-265 (407)
198 COG1055 ArsB Na+/H+ antiporter 20.0 1.3E+03 0.029 26.2 20.8 35 30-66 11-45 (424)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.3e-153 Score=1371.43 Aligned_cols=763 Identities=31% Similarity=0.538 Sum_probs=671.9
Q ss_pred CCCCCcccCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhccccc-ccccccCCChHHH
Q 043324 2 DATANIMCQEDPVN-PVVSTCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYV-IERFFIKPNSAEY 79 (788)
Q Consensus 2 ~~~~~~~~~~~pl~-~l~~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~-~~~~f~~~~~~~~ 79 (788)
.+|+|+|+|+||++ ++|.+++|+++++++++++++++||+|||+++|||++|+++||+++|+++. .+.+||.++ ...
T Consensus 25 ~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~-~~~ 103 (832)
T PLN03159 25 ITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRS-VMV 103 (832)
T ss_pred ccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcch-HHH
Confidence 67899999999999 999999999999999999999999999999999999999999999999877 566788754 456
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSAS 159 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~ 159 (788)
++.++++|++++||++|+|+|++.+|+++|+++.+|+.++++|+++|+++++++ ++..........++++|+++|.||+
T Consensus 104 l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~ 182 (832)
T PLN03159 104 LETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAF 182 (832)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhH
Confidence 788999999999999999999999999999999999999999999999888776 4322112234567899999999999
Q ss_pred HHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh----HHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 043324 160 PVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFK----TLL-LSIFLTASLILVNCYLVIWFNTK 234 (788)
Q Consensus 160 ~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~----~~~-l~~l~~~~~~~v~r~~~~~l~~~ 234 (788)
|+++++|+|+|+++++.||+++++++++|+++|++++++.++...+... +.. ..+++++++++++||++.|+.|+
T Consensus 183 pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~ 262 (832)
T PLN03159 183 PVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRR 262 (832)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987775443111 111 12334566677889999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhcccc
Q 043324 235 SRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNI 314 (788)
Q Consensus 235 ~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl 314 (788)
++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|++++++++|+|+||+.+||++|+
T Consensus 263 ~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl 341 (832)
T PLN03159 263 TPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNV 341 (832)
T ss_pred CcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeH
Confidence 9988888999999999999999999999999999999999999995 789999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHH
Q 043324 315 SSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLS 394 (788)
Q Consensus 315 ~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~ 394 (788)
..+.+...|..+++++++++++|+++++++++++|+|++ |++.+|++||+||+++++++++|++.|++ +++.|+++++
T Consensus 342 ~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~-eal~lG~lm~~kG~~~Lii~~ig~~~gvi-~~~~f~~lVl 419 (832)
T PLN03159 342 TKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFR-EGITLGFLMNTKGLVEMIVLNVGRDQEVL-DDESFAVMVL 419 (832)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHhcccHHHHHHHHHHHhcCcc-CchhhhHHHH
Confidence 888654456666777888899999999999999999999 99999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhHHHHHHHHhchhhhhhhccccccccCCCCCceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeec
Q 043324 395 VIVLNTLMAGPVVSFIMRKQEVQLTHNRTSIECLDPESELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVEL 474 (788)
Q Consensus 395 ~~lltt~i~~~lv~~l~~~~~~~~~~~~~~i~~~~~~~elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel 474 (788)
+++++|.+.+|++.++|+|+||+.+|++|++++.+++.|+|||+|+|++++++++++|++++++++++|+++|++||+||
T Consensus 420 ~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL 499 (832)
T PLN03159 420 VAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVEL 499 (832)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccccCC-CCccCCCccCCCcccchhHHHHhhhcC-CceEEEEEEEeeCCCChhHHHHHHHhhcCccEEE
Q 043324 475 PKRRKKKNLMYHQLQDG-DQFSDEDEYGGNDVMEINEAVDIFSSE-TKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIF 552 (788)
Q Consensus 475 ~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~af~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~lii 552 (788)
+||+++ .+++|+.++. .+..++...++|+++ +||++|+++ ++|+++++|++|||++||+|||++|+||++|+||
T Consensus 500 ~~r~~~-~l~~h~~~~~~~~~~~~~~~~~~~i~---~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIi 575 (832)
T PLN03159 500 TGRASA-MLIVHNTRKSGRPALNRTQAQSDHII---NAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLII 575 (832)
T ss_pred cCCCcc-ceeeeecccccccccccccccccHHH---HHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEE
Confidence 999955 5555544332 211112233478888 999999865 5899999999999999999999999999999999
Q ss_pred ecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEecCCCcccccccCCCCccEEEEEccCCccHHHHHHHHHHHhh
Q 043324 553 LPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDRGCLEFQRLLAPDSLQSVATLFFGGPDDREAIACSKRLAM 632 (788)
Q Consensus 553 lp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdRg~~~~~~~~~~~~~~~i~v~f~GG~DDreAL~~a~rma~ 632 (788)
+||||+|+.||++++.++.+|++|+|||++||||||||||||..+.++...++..+||+++|+|||||||||+||+|||+
T Consensus 576 lpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~ 655 (832)
T PLN03159 576 IPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSE 655 (832)
T ss_pred ECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999976543333344568999999999999999999999999
Q ss_pred CCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhh-hccCCCccccHHHHHHHHHHhccCCCceEEEEEecCCh
Q 043324 633 HHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMS-IARRNPENKRDDVYMDEFYKRYVSSGQIGYVEKNLRDG 711 (788)
Q Consensus 633 ~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~E~~v~~~ 711 (788)
||++++||+||++.+++.++. + .. ..+ .+++...+ .+++++|+++||++++|||.++.++++|.|+||+|+||
T Consensus 656 ~p~v~lTVirf~~~~~~~~~~-~-~~--~~~--~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~ 729 (832)
T PLN03159 656 HPGITLTVMRFIPGEDAAPTA-S-QP--ASS--PSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNG 729 (832)
T ss_pred CCCeEEEEEEEEccccccccc-c-cc--ccc--ccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCH
Confidence 999999999999742221111 0 00 000 01111111 12235789999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEeeccC
Q 043324 712 AETLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASMDFDIKSSVLVIQQHRH 779 (788)
Q Consensus 712 ~~~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvQq~~~ 779 (788)
.||+++||+|+++|||+||||+|+.+|++|+||+||+||||||||||+|||+||.+++||||||||+.
T Consensus 730 ~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 730 EETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVG 797 (832)
T ss_pred HHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeecc
Confidence 99999999999999999999999888999999999999999999999999999999999999999974
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-126 Score=1115.43 Aligned_cols=747 Identities=31% Similarity=0.498 Sum_probs=666.3
Q ss_pred CCCCCcccCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhccccc-ccccccCCChHHH
Q 043324 2 DATANIMCQEDPVN-PVVSTCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYV-IERFFIKPNSAEY 79 (788)
Q Consensus 2 ~~~~~~~~~~~pl~-~l~~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~-~~~~f~~~~~~~~ 79 (788)
.++.|+|+++||++ ++|++++|+.+++++++++++++||+|||++++++++||++||+.+|+++. ...+||.+ ....
T Consensus 5 ~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~-s~~~ 83 (769)
T KOG1650|consen 5 ATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKS-SMIV 83 (769)
T ss_pred cccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccc-hHHH
Confidence 57899999999999 999999999999999999999999999999999999999999999999988 66788844 4677
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch----hHHHHHHHHHHh
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNK----IAFAIVTIIIIA 155 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~----~~~~l~lg~~ls 155 (788)
.+.++.+|+.+++|+.|+|+|.+.+++.+|++..+|+.++++|+..|.++...+.+........ ..+..++..+++
T Consensus 84 l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 163 (769)
T KOG1650|consen 84 LELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQS 163 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999999999988877664433322111 125678889999
Q ss_pred cccHHHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc------hhHHHHHHHHHHHHHHHHHHHHH
Q 043324 156 NSASPVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGM------FKTLLLSIFLTASLILVNCYLVI 229 (788)
Q Consensus 156 ~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~------~~~~~l~~l~~~~~~~v~r~~~~ 229 (788)
.|+||+++++|.|+|++++++||+++++++++|+++|.++++..++.+... .+.....+.+.++..++.||++.
T Consensus 164 ~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~ 243 (769)
T KOG1650|consen 164 ITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMK 243 (769)
T ss_pred cchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHH
Confidence 999999999999999999999999999999999999999988888776542 11122233455666778999999
Q ss_pred HHHhhcccccccchhHHHHHHHHHHHHHHHHHHhC-hhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHh
Q 043324 230 WFNTKSRNQKFINNSQVLLILVLLISVSMIIESSG-LYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFT 308 (788)
Q Consensus 230 ~l~~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G-~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~ 308 (788)
|+.||+|+++++++.|+..++..++.++.+++.++ .|+++|||+.|+++|+++|+++.+.||+|++..++|+|+||+.+
T Consensus 244 wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~ 323 (769)
T KOG1650|consen 244 WIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAIS 323 (769)
T ss_pred HHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhh
Q 043324 309 GFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDI 388 (788)
Q Consensus 309 G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~ 388 (788)
|+++|+..+.. |......+...+++|++++..++.++|+|+| |++.+|++|++||.+++++++.+++.|++ +.+.
T Consensus 324 G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~-~~l~l~~lm~~kgl~el~~~~~~~~~~~~-~~~~ 398 (769)
T KOG1650|consen 324 GLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLR-DSLALGLLMSTKGLVELIVLNTGLDRKIL-SDEG 398 (769)
T ss_pred ccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHhhhHHHHHHHHHHhhcCCc-ccch
Confidence 99999988875 7777888888999999999999999999999 99999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhchhhhhhhccccccccCCCCCceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeE
Q 043324 389 RRLLLSVIVLNTLMAGPVVSFIMRKQEVQLTHNRTSIECLDPESELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYL 468 (788)
Q Consensus 389 ~~~lv~~~lltt~i~~~lv~~l~~~~~~~~~~~~~~i~~~~~~~elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~a 468 (788)
|++++++++++|.++||+++.+|+|.+++..|++|++++.+++.++|++.|+|+++|+++++++++++.+++++|+++|+
T Consensus 399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~ 478 (769)
T KOG1650|consen 399 FTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYA 478 (769)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHhhhcC--CceEEEEEEEeeCCCChhHHHHHHHhhc
Q 043324 469 MHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDIFSSE--TKIFVRQIKAVSSFPTMYEDVCSQAEDL 546 (788)
Q Consensus 469 lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~~~~~--~~v~v~~~~~vs~~~~m~~dI~~~A~~~ 546 (788)
+|++||.+|++| ++++|..++... .+...+.+|++. ++|+.|++. ..|.++++|+++|+++||||||.+|.++
T Consensus 479 lhlveL~~~~~~-~li~h~~~~~~~-~~~~s~~~~~i~---~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~ 553 (769)
T KOG1650|consen 479 LHLVELVGRATP-LLISHKLRKNGR-VESRSSSSDQIN---VAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDK 553 (769)
T ss_pred eeeeecccccch-hhhhhhhccccc-cccccccchhhH---HHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhh
Confidence 999999999965 566665443311 123334456776 999999873 6799999999999999999999999999
Q ss_pred CccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEecCCCcccccccCCCCccEEEEEccCCccHHHHHHH
Q 043324 547 RVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDRGCLEFQRLLAPDSLQSVATLFFGGPDDREAIAC 626 (788)
Q Consensus 547 ~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdRg~~~~~~~~~~~~~~~i~v~f~GG~DDreAL~~ 626 (788)
++++|++||||+|+.++..|+.+..+|++|++|+++||||||||||||..+........+.++|+++|+||+||||||+|
T Consensus 554 ~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~ 633 (769)
T KOG1650|consen 554 GVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALAL 633 (769)
T ss_pred CCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHH
Confidence 99999999999999666999999999999999999999999999999821110111122568999999999999999999
Q ss_pred HHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHHHHHHH-HHhccCCCceEEE-
Q 043324 627 SKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDVYMDEF-YKRYVSSGQIGYV- 704 (788)
Q Consensus 627 a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~-~~~~~~~~~v~y~- 704 (788)
++||++||++++||+||++++.+.++. +. .++++++|++...++ +..+..+.++.|.
T Consensus 634 ~~rm~~~~~v~lTVirf~~~~~~~~~~-------------~~--------~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 692 (769)
T KOG1650|consen 634 AKRMAENPRVTLTVIRFFPDESKYNRK-------------VL--------VEVGKMLDQEGLEDFVKSTRESNLDIIYAE 692 (769)
T ss_pred HHHHhhCCceEEEEEEeeccchhhccc-------------cc--------chhhhhhhhhHHHHHHHHhhhchhhhhhhh
Confidence 999999999999999999843222111 01 157889999999999 6666677789999
Q ss_pred EEecCChHHHHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEeeccCC
Q 043324 705 EKNLRDGAETLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASMDFDIKSSVLVIQQHRHT 780 (788)
Q Consensus 705 E~~v~~~~~~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~~~~SvLVvQq~~~~ 780 (788)
||.|+|+.||.+++|+++++|||++|||+|+.+++.|+|+++|+||||||+|||+|+|+||.+++||||+|||.+.
T Consensus 693 ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 693 EKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred HHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeecC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999764
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=2.3e-49 Score=463.10 Aligned_cols=397 Identities=17% Similarity=0.213 Sum_probs=327.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhc
Q 043324 19 STCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLE 98 (788)
Q Consensus 19 ~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle 98 (788)
.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|++++ .+.+..++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~----------~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD----------VESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC----------HHHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999998764 2346779999999999999999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhH
Q 043324 99 FDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGR 178 (788)
Q Consensus 99 ~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~ 178 (788)
+|++.+|+.+|+++.+|..++++|+++++++++++ ++ ++..++++|.+++.||++++.++|+|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~-g~------~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLL-GL------RWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 99999999999999999999999998888776654 44 677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-Cc--h---hHHHHHH-HHH----HHHHHHHHHHHHHHHhhcccccccchhHHH
Q 043324 179 LAMSSSLINEMSCSLLFSLVVAFTED-GM--F---KTLLLSI-FLT----ASLILVNCYLVIWFNTKSRNQKFINNSQVL 247 (788)
Q Consensus 179 l~ls~a~i~D~~~~ill~l~~~~~~~-~~--~---~~~~l~~-l~~----~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~ 247 (788)
.++++++++|+.+|++++++..+... .. . +...... ++. +++.++.+|+++|+.++. .+|.+..
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHH
Confidence 99999999999999999988766542 11 1 1111111 111 222344555555555432 3678888
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHH
Q 043324 248 LILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVAL 327 (788)
Q Consensus 248 ~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~ 327 (788)
.+++++++++++++.+|+|+++|||++|+++++ +++++++.++++. +.++|+|+||+++||++|+..+.. .|+.++
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~p-f~~lll~lFFi~vG~~id~~~l~~--~~~~il 298 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEP-FKGLLLGLFFIAVGMSIDFGTLLE--NPLRIL 298 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHH-HHHHHHHHHHHHhhhhccHHHHHH--HHHHHH
Confidence 889999999999999999999999999999994 7889998888886 589999999999999999987764 355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHH
Q 043324 328 VMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVV 407 (788)
Q Consensus 328 ~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv 407 (788)
.++++.+++|++++++.++++|++++ +++.+|++|+++|+++++++.++.+.|++ +++.|+.+++++++|++++|++.
T Consensus 299 ~~~~~~~~~K~~~~~~~~~~~g~~~~-~a~~~gl~L~~~Gef~~vl~~~a~~~~~i-~~~~~~~lv~~v~lS~~~tP~l~ 376 (621)
T PRK03562 299 ILLLGFLAIKIAMLWLLARPLGVPRK-QRRWFAVLLGQGGEFAFVVFGAAQMANVL-EPEWAKLLTLAVALSMAATPLLL 376 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHh-HHHHHHHHHhccccHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667889999999999999999999 99999999999999999999999999999 99999999998888888877766
Q ss_pred HHHhchh-hhhhhccccccccCCCCCceEEEEEEeCCCCc
Q 043324 408 SFIMRKQ-EVQLTHNRTSIECLDPESELRMICCVYKPRNA 446 (788)
Q Consensus 408 ~~l~~~~-~~~~~~~~~~i~~~~~~~elriLvcv~~~~~~ 446 (788)
.. |++. .+....+ +. ++..++.+.|+++|++|+.+.
T Consensus 377 ~~-~~~~~~~~~~~~-~~-~~~~~~~~~~vII~G~Gr~G~ 413 (621)
T PRK03562 377 VL-LDRLEQSRTEEA-RE-ADEIDEQQPRVIIAGFGRFGQ 413 (621)
T ss_pred Hh-hhHHHHHHhhhc-cc-ccccccccCcEEEEecChHHH
Confidence 54 4432 1111101 11 111122357999999999995
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=6.7e-49 Score=457.67 Aligned_cols=410 Identities=18% Similarity=0.218 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhcc
Q 043324 20 TCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEF 99 (788)
Q Consensus 20 ~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~ 99 (788)
++..+.++++++.+++.++||+|+|+++|||++|+++||+++|.+.+ .+..+.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~----------~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD----------TKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc----------hHHHHHHHHHHHHHHHHHhHhcC
Confidence 45566888899999999999999999999999999999999998654 24567899999999999999999
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHH
Q 043324 100 DVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRL 179 (788)
Q Consensus 100 d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l 179 (788)
|++.+|+.++.....++.++++|+++++++++.+ ++ ++..++++|.++|.||+++++++++|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVL-GW------SLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-CC------CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 9999999988877778888889988888766644 44 6778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---C--chh---HHHH-----HHHHHHHHHHHHHHHHHHHHhhcccccccchhHH
Q 043324 180 AMSSSLINEMSCSLLFSLVVAFTED---G--MFK---TLLL-----SIFLTASLILVNCYLVIWFNTKSRNQKFINNSQV 246 (788)
Q Consensus 180 ~ls~a~i~D~~~~ill~l~~~~~~~---~--~~~---~~~l-----~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~ 246 (788)
++++++++|+.+|++++++..+... + +.. .... .+++.++..++.|++.+|+.++.++.+ .+|.++
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~ 228 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence 9999999999999998887665421 1 111 1111 122344556778999999999887654 578888
Q ss_pred HHHHHHHHHHHHH-HHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHH
Q 043324 247 LLILVLLISVSMI-IESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIV 325 (788)
Q Consensus 247 ~~il~~~l~~~~~-~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~ 325 (788)
..++++++++++. ++.+|+|+++|||++|+++|+ +++++++.+... ++.++|+|+||+.+|+++|+..+.+ .+..
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~-~~~~~f~plFFv~~G~~~d~~~l~~--~~~~ 304 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTL-PLRDAFAVLFFVSVGMLFDPMILIQ--QPLA 304 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHh-hHHHHHHHHHHHHhhhhcCHHHHHH--HHHH
Confidence 8888888888764 699999999999999999995 677777666544 4789999999999999999987754 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHH
Q 043324 326 ALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGP 405 (788)
Q Consensus 326 ~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~ 405 (788)
.+.++++.+++|++++++.++++|+++| +++.+|++|++||+++++++..+++.|++ +++.|+.+++++++|++++|+
T Consensus 305 ~~~~~~~~~v~K~~~~~~~~~~~g~~~~-~a~~~gl~l~~~Gef~lii~~~~~~~gii-~~~~~~~~v~~~~~t~~~~P~ 382 (558)
T PRK10669 305 VLATLAIIVFGKSLAAFFLVRLFGHSRR-TALTIAASLAQIGEFAFILAGLGMALNLL-PQAGQNLVLAGAILSIMLNPV 382 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChh-hHHHHHHHHhcccchHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 5556777889999999999999999999 99999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHhchhhhhhhcccc----cccc---CCCCCceEEEEEEeCCCCchhHHHHHHHhc
Q 043324 406 VVSFIMRKQEVQLTHNRT----SIEC---LDPESELRMICCVYKPRNASGQLGLCSALR 457 (788)
Q Consensus 406 lv~~l~~~~~~~~~~~~~----~i~~---~~~~~elriLvcv~~~~~~~~li~L~~~l~ 457 (788)
+.++..+..++..+.+.+ ..++ .+++.+.|+++|++|+.+.. +++.+.
T Consensus 383 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~~G~~----la~~L~ 437 (558)
T PRK10669 383 LFTLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSL----LGEKLL 437 (558)
T ss_pred HHHHhhHHHHHhhhccccccccccccccccccccCCCEEEECCChHHHH----HHHHHH
Confidence 998876653332211111 1111 12234689999999999863 556654
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.9e-48 Score=454.69 Aligned_cols=400 Identities=17% Similarity=0.181 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhc
Q 043324 19 STCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLE 98 (788)
Q Consensus 19 ~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle 98 (788)
.++.++.+++.++.++..+++|+|+|+++||+++|+++||+++|.+++ .+....++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~----------~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD----------VDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 367788899999999999999999999999999999999999998765 2335679999999999999999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhH
Q 043324 99 FDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGR 178 (788)
Q Consensus 99 ~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~ 178 (788)
+|++.+|+.+|+++.+|..++++|+++++.+.+++ ++ ++..++++|++++.||++++.++|+|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~-g~------~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~ 147 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT-DF------SWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ 147 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 99999999999999999999999998777665543 44 677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCc---hhHHHHH-HHHHHH----HHHHHHHHHHHHHhhcccccccchhHHHHHH
Q 043324 179 LAMSSSLINEMSCSLLFSLVVAFTEDGM---FKTLLLS-IFLTAS----LILVNCYLVIWFNTKSRNQKFINNSQVLLIL 250 (788)
Q Consensus 179 l~ls~a~i~D~~~~ill~l~~~~~~~~~---~~~~~l~-~l~~~~----~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il 250 (788)
++++.++++|+.+|++++++..+..... .+..... ++..++ ..++.+|+++|+.+. +.+|.++..++
T Consensus 148 ~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l 222 (601)
T PRK03659 148 LGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAAL 222 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHH
Confidence 9999999999999999988876654321 1111111 111122 233444555554332 24688888889
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHH
Q 043324 251 VLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMV 330 (788)
Q Consensus 251 ~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~ 330 (788)
+++++++++++.+|+|+++|||++|+++++ +++++++.++++. +.++|+|+||+++||++|+..+.+ .|..++.++
T Consensus 223 ~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~p-f~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~ 298 (601)
T PRK03659 223 LLVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEP-FKGLLLGLFFISVGMALNLGVLYT--HLLWVLISV 298 (601)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHH-HHHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHH
Confidence 999999999999999999999999999995 7888898888886 589999999999999999988765 466666677
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHH
Q 043324 331 SLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFI 410 (788)
Q Consensus 331 ~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l 410 (788)
++.+++|++++++.++++|++++ +++.+|++|+++|+++++++..+.+.|++ +++.|+.+++++++|++++|.+.+..
T Consensus 299 ~~~l~~K~~~~~~~~~~~g~~~~-~al~~g~~L~~~Gef~~vl~~~a~~~g~i-~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 299 VVLVAVKGLVLYLLARLYGLRSS-ERMQFAGVLSQGGEFAFVLFSAASSQRLL-QGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHhccccHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999999 99999999999999999999999999999 99999999999999887766555443
Q ss_pred hch-hhhhhhccccccccCCCCCceEEEEEEeCCCCc
Q 043324 411 MRK-QEVQLTHNRTSIECLDPESELRMICCVYKPRNA 446 (788)
Q Consensus 411 ~~~-~~~~~~~~~~~i~~~~~~~elriLvcv~~~~~~ 446 (788)
.++ .+++.........+...+.+.|+++|++|+.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~vII~G~Gr~G~ 413 (601)
T PRK03659 377 DKWLARRLNGPEEEDEKPWVEDDKPQVIIVGFGRFGQ 413 (601)
T ss_pred HHHHHHhhccccccccccccccccCCEEEecCchHHH
Confidence 332 222211101000111112357999999999995
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-45 Score=405.57 Aligned_cols=378 Identities=24% Similarity=0.364 Sum_probs=319.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHh
Q 043324 17 VVSTCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLG 96 (788)
Q Consensus 17 l~~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~G 96 (788)
....+.|+.++++++.+.++++||+|+|+++||+++|+++||.+++.+.. ..+..+.++++|++++||.+|
T Consensus 4 ~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~---------~~~~i~~laelGvi~LlF~~G 74 (397)
T COG0475 4 LSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIE---------SSEIIELLAELGVVFLLFLIG 74 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCC---------chHHHHHHHHHhHHHHHHHHH
Confidence 34578899999999999999999999999999999999999955554443 246678899999999999999
Q ss_pred hccChhHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCc
Q 043324 97 LEFDVPFMKRNLHL-VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSD 175 (788)
Q Consensus 97 le~d~~~l~~~~~~-~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 175 (788)
+|+|++++|+++|+ +...+..++..|+.++....+..+++ ++..++++|.+++.||+++++++++|+|..+++
T Consensus 75 LE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~------~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~ 148 (397)
T COG0475 75 LEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL------SLIAALFLGAALALSSTAIVLKILMELGLLKTR 148 (397)
T ss_pred HCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999 77788888888888775444322354 677899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh----H-HHHHH-HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHH
Q 043324 176 VGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFK----T-LLLSI-FLTASLILVNCYLVIWFNTKSRNQKFINNSQVLLI 249 (788)
Q Consensus 176 ~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~----~-~~l~~-l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~i 249 (788)
.|++++++++++|+.++++++++..+..+++.. . ....+ .+.++..+..+++.+++.|+..+. +.+|..+..+
T Consensus 149 ~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~ 227 (397)
T COG0475 149 EGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFV 227 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 999999999999999999999999987654321 1 11111 223333343566677666665432 3478889999
Q ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchh-HHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHH
Q 043324 250 LVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTT-RTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALV 328 (788)
Q Consensus 250 l~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~-~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~ 328 (788)
+.+++++++++|.+|+|+++|||++|+++++ .+.+ +++.+|++.+..++|+|+||+.+||++|+..+.+ .+..++.
T Consensus 228 l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~ 304 (397)
T COG0475 228 LLLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILL 304 (397)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHH
Confidence 9999999999999999999999999999995 5556 7999999987777999999999999999999876 4555778
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 043324 329 MVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVS 408 (788)
Q Consensus 329 i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~ 408 (788)
++.+.+++|.+++++.++..|.+.| ++...|+.+.++|+++++.++.+.. +.+ +++.++..+.++++++.+.+++.+
T Consensus 305 ~~~~~i~~K~~~~~~~~~~~g~~~~-~~~~~g~~~~~~ge~~~v~~~~~~~-~~i-~~~~~~~~v~~smi~t~i~~~~~~ 381 (397)
T COG0475 305 LVALAILGKILGAYLAARLLGFSKR-LALGIGLLLRQGGEFAFVLAGIALG-SAI-SEALLTAVVILSMITTPILPLLTP 381 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHhhhhhhhHHHHHHHHhccc-chh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999 9999999999999999999999887 577 899999999999999988888888
Q ss_pred HHhchhhh
Q 043324 409 FIMRKQEV 416 (788)
Q Consensus 409 ~l~~~~~~ 416 (788)
.++++..+
T Consensus 382 ~~~~~~~~ 389 (397)
T COG0475 382 ILLKRLLK 389 (397)
T ss_pred HHHHHhhc
Confidence 88776443
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=2e-39 Score=377.78 Aligned_cols=381 Identities=16% Similarity=0.161 Sum_probs=318.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHh
Q 043324 17 VVSTCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLG 96 (788)
Q Consensus 17 l~~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~G 96 (788)
...++++++++++++.+++.+++|+|+|.+++|+++|+++||+++|.+.. ++ .+..+.+++++++++||..|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~-------~~-~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF-------DN-YPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc-------Cc-HHHHHHHHHHHHHHHHHcCc
Confidence 45678999999999999999999999999999999999999999997543 21 34567899999999999999
Q ss_pred hccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCc-CCCc
Q 043324 97 LEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKL-DTSD 175 (788)
Q Consensus 97 le~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-l~s~ 175 (788)
+|+|++.+|+.+++++.++..++++|++++...++++.++ ++..++++|+++++||++++.++++|+|+ ++++
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 9999999999999999999999999998866666555565 78889999999999999999999999996 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hhHH-----HHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHH
Q 043324 176 VGRLAMSSSLINEMSCSLLFSLVVAFTEDGM--FKTL-----LLSIFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLL 248 (788)
Q Consensus 176 ~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~--~~~~-----~l~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~ 248 (788)
+|+++.+++.+||.++++++.++..+..++. ..+. ...+.+.++.++++++++.|+.+|.... .++.+..+
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~ 227 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPIL 227 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHH
Confidence 9999999999999999998887776654332 1111 1123344556677888888888887421 24567788
Q ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHH
Q 043324 249 ILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALV 328 (788)
Q Consensus 249 il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~ 328 (788)
++++++++++++|.+|.|+++|+|++|+++++.++..+...+++.+.+..++.|+||+.+|+.+|+..+.+. .+..+++
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~~~l~i 306 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-ALPALLL 306 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHH
Confidence 889999999999999999999999999999976545555567777788899999999999999999877642 2333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 043324 329 MVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVS 408 (788)
Q Consensus 329 i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~ 408 (788)
.+++.+++|++++++.++.+++++| |+..+|+. ++||+++++++..+.+.|+..++..|++..+++++|+++.++.++
T Consensus 307 ~~~l~~vaR~l~v~l~~~~~~~~~~-e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~ 384 (562)
T PRK05326 307 ALFLILVARPLAVFLSLLPFRFNLR-EKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLP 384 (562)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHh-hhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHH
Confidence 4456779999999999999999999 99999994 899999999999999999882356788988999999999999998
Q ss_pred HHhchhhh
Q 043324 409 FIMRKQEV 416 (788)
Q Consensus 409 ~l~~~~~~ 416 (788)
.+.|+.+-
T Consensus 385 ~~a~~l~l 392 (562)
T PRK05326 385 WAARKLGV 392 (562)
T ss_pred HHHHHcCC
Confidence 88776543
No 8
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-35 Score=293.06 Aligned_cols=364 Identities=18% Similarity=0.238 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCh
Q 043324 22 LQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDV 101 (788)
Q Consensus 22 l~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~ 101 (788)
--+..-+.++.+++.+..|+|+|+.+||+++|++.||.--|...+ +.+...++++|++++||-+|+++++
T Consensus 9 ~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad----------~~La~~LAelGViLLmFgvGLhfsl 78 (408)
T COG4651 9 TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD----------QTLAPELAELGVILLMFGVGLHFSL 78 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc----------hhHHHHHHHhhHHHHHHhcchheeH
Confidence 334455677888999999999999999999999999977776665 4556679999999999999999999
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHH
Q 043324 102 PFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAM 181 (788)
Q Consensus 102 ~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~l 181 (788)
+.+...+.-++--++.++.+...+|.++++.+ +| ++...+.+|.++|..|+.++.|.|+|+++.+++.||+++
T Consensus 79 kdLLavk~iAipgAl~qia~at~lg~gL~~~l-gw------s~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAi 151 (408)
T COG4651 79 KDLLAVKAIAIPGALAQIALATLLGMGLSSLL-GW------SFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAI 151 (408)
T ss_pred HHHhhHHHHhcchHHHHHHHHHHHHhHHHHHc-CC------CcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEE
Confidence 99987655555555556655556666666644 55 677789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc---Cch---------hHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHH
Q 043324 182 SSSLINEMSCSLLFSLVVAFTED---GMF---------KTLL-LSIFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLL 248 (788)
Q Consensus 182 s~a~i~D~~~~ill~l~~~~~~~---~~~---------~~~~-l~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~ 248 (788)
+..+++|+..++.+.+.+++++- ... +.+. ....+.+++.++.|.+.+|+..+.... -.+|.+...
T Consensus 152 GwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrElf~L~ 230 (408)
T COG4651 152 GWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRELFTLA 230 (408)
T ss_pred eehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHH
Confidence 99999999999999888887542 111 0111 112355677888999999998876432 247889899
Q ss_pred HHHHHHHHHH-HHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHH
Q 043324 249 ILVLLISVSM-IIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVAL 327 (788)
Q Consensus 249 il~~~l~~~~-~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~ 327 (788)
++..+++.++ .++.+|+++.+|||++|++++ ++++.++..+.. -+.++.|.-+||+++||..|...+.+ ....++
T Consensus 231 vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~-eselshraa~~s-lpLrdaFaVlFFvsVGmlf~P~~l~~--~pl~vl 306 (408)
T COG4651 231 VLAIALGVAFGAAELFGVSFALGAFFAGMVLA-ESELSHRAAEDS-LPLRDAFAVLFFVSVGMLFDPMILIQ--QPLAVL 306 (408)
T ss_pred HHHHHHHHhhccceeeccchhHHHHHHHHHhc-chhhhHHHHHhc-cCHHHHHHHHHHHHhhhhcCcHHhhc--chHHHH
Confidence 9999888876 667899999999999999999 677777755443 37899999999999999999987764 233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHH
Q 043324 328 VMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVV 407 (788)
Q Consensus 328 ~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv 407 (788)
..+++...+|-++.+...+.+|.|.| .++.++..+.+.||++++++..|.+.+++ ++.--...+...+++.++.|.+.
T Consensus 307 atllii~~gKs~aaf~ivr~Fg~~~~-TaLtis~SLaqigEFsfIlaGLgi~l~ll-p~~gr~LvlagailsIl~nPllf 384 (408)
T COG4651 307 ATLLIILFGKSVAAFFIVRAFGHPVR-TALTISASLAQIGEFSFILAGLGIKLNLL-PEAGRDLVLAGAILSILLNPLLF 384 (408)
T ss_pred HHHHHHHhhhHHHHHHHHHHhCCcch-HHHHHHHHHHhhhhHHHHHHHHhhhhccC-cHHHHHHHHHHHHHHHHHhHHHH
Confidence 66677789999999999999999999 99999999999999999999999999999 86666666555555555555444
Q ss_pred HH
Q 043324 408 SF 409 (788)
Q Consensus 408 ~~ 409 (788)
..
T Consensus 385 ~~ 386 (408)
T COG4651 385 AL 386 (408)
T ss_pred HH
Confidence 44
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.4e-39 Score=363.23 Aligned_cols=366 Identities=24% Similarity=0.422 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 043324 26 GILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMK 105 (788)
Q Consensus 26 lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~ 105 (788)
++++.+.+.+.++||+++|.+++|+++|+++||.+++.+++ + ....+.++++|+.++||.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455666677899999999999999999999998886554 2 23356689999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HHHHHHH--HHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHH
Q 043324 106 RNLHLVTTVAYGGFMACGIF-GAAISWF--IIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMS 182 (788)
Q Consensus 106 ~~~~~~~~i~~~~~~ip~~l-~~~~~~~--l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls 182 (788)
+++|+++.+++.++.+|+++ ++.+.++ ..++ ++..++++|.+++.||++++.++++|.+..+++.++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~ 147 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLFILGL------SWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLS 147 (380)
T ss_dssp ----------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhccchh------hhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhh
Confidence 99999999999999999988 6666543 2344 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHH----HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 043324 183 SSLINEMSCSLLFSLVVAFTEDG---MFKTLLLSIF----LTASLILVNCYLVIWFNTKSRNQKFINNSQVLLILVLLIS 255 (788)
Q Consensus 183 ~a~i~D~~~~ill~l~~~~~~~~---~~~~~~l~~l----~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~ 255 (788)
++++||+++++++.+.....+.+ ........++ ...+..++.+++..|+.|+. ++.++.+...+++.++.
T Consensus 148 ~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 224 (380)
T PF00999_consen 148 ESVINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILL 224 (380)
T ss_dssp TTTTTTTTTTTTT-------------------------------------------------------------------
T ss_pred hchhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhh
Confidence 99999999999988887776221 1111112222 22233344444455554443 23467788889999999
Q ss_pred HHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhcccccccc-chhHHHHHHHHHHHHH
Q 043324 256 VSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLS-TIDNVIVALVMVSLSI 334 (788)
Q Consensus 256 ~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~-~~~~~~~~~~i~~~~~ 334 (788)
+++++|.+|.|+++|+|++|++++ +.+.++++.+|++.+.++++.|+||+.+|+++|++.+. +...|...+.+.+..+
T Consensus 225 ~~~~a~~~g~s~~l~af~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~ 303 (380)
T PF00999_consen 225 LYGLAEILGLSGILGAFIAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAIL 303 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccccccccceeeeeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHH
Confidence 999999999999999999999999 56777788999998878999999999999999998874 2235666677777777
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHhc
Q 043324 335 AGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIMR 412 (788)
Q Consensus 335 ~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~~ 412 (788)
++|++++++.+++.|+++| ++..+|+.+++||+++++++..+.+.|++ +++.+++++.++++|+++.|+.++.+.+
T Consensus 304 ~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~l~la~~~~~~~~~-~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 304 LGKFIGVYLASRLFGIPWK-EALFIGLGMLPRGEVSLALALIALNLGII-SEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp --------------------HHHHTTTTSS--HHHHHHHHHHHHH---------------------------------
T ss_pred Hhhhceeehhhhhcccccc-hhHHHHHhhcCccHHHHHHHHHHHhcCCC-CHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 9999999999999999999 99999999999999999999999999999 9999999999999999999998887654
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.9e-34 Score=307.12 Aligned_cols=265 Identities=21% Similarity=0.286 Sum_probs=225.5
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhh
Q 043324 29 VVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNL 108 (788)
Q Consensus 29 ~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~ 108 (788)
+++.+.+.++||+|+|++++|+++|+++||+++|.+++ .+..+.++++|+.+++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~----------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN----------VEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC----------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45777899999999999999999999999999997765 34577899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHHHH
Q 043324 109 HLVTTVAYGGFMAC-GIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSLIN 187 (788)
Q Consensus 109 ~~~~~i~~~~~~ip-~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i~ 187 (788)
|++..+++.++++| +.+++.+++++ ++ ++..++++|++++.||+++++++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLL-GL------ALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 66666555543 44 678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCc--hh---HHHH-HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHH
Q 043324 188 EMSCSLLFSLVVAFTEDGM--FK---TLLL-SIFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLLILVLLISVSMIIE 261 (788)
Q Consensus 188 D~~~~ill~l~~~~~~~~~--~~---~~~l-~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~~e 261 (788)
|+++++++++......+.+ .. .... .+...++.+++.++..+|+.|+.++.++ +|.++..++.+++.+++++|
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHH
Confidence 9999999998887764321 11 1111 1223345567788889999888776433 57788888999999999999
Q ss_pred HhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccc
Q 043324 262 SSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFN 313 (788)
Q Consensus 262 ~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~id 313 (788)
.+|.|+++|||++|+++++ .+.++++.++++.+. ++|.|+||+.+|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999996 556788899999977 9999999999999987
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=7.2e-26 Score=261.21 Aligned_cols=363 Identities=13% Similarity=0.087 Sum_probs=260.9
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHH
Q 043324 7 IMCQEDPVNPVVSTCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFF 86 (788)
Q Consensus 7 ~~~~~~pl~~l~~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~i 86 (788)
+|..-++-++-..+++-=+++++++.+..++.+|+.+|..+.++++|+++||.++|++++.++- ........+.++
T Consensus 2 ~w~~l~~~~~~l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g----~~d~i~leIteI 77 (810)
T TIGR00844 2 IWEQLEVTKAHVAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWG----NTDSITLEISRI 77 (810)
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcc----cchHHHHHHHHH
Confidence 3555555553223333334444555555666669999999999999999999999877651110 001222228899
Q ss_pred HHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccchhHHHHHHHHHHhcccHHHHHHH
Q 043324 87 ARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFI-IRELTISYNKIAFAIVTIIIIANSASPVVIRL 165 (788)
Q Consensus 87 gl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l-~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i 165 (788)
++++.+|.+|++++.+.+++.++..+.+++.++.+++++++++++++ .++ ++..++++|+++++|++.....+
T Consensus 78 vL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL------~~~~ALLLGAILAPTDPVLAssV 151 (810)
T TIGR00844 78 LLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL------NFPASLLMGACITATDPVLAQSV 151 (810)
T ss_pred HHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHhhhcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999888887766 355 78899999999999998766666
Q ss_pred HH---hcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc----Cch--hH---HHHH-HHHHHHHHHHHHHHHHHHH
Q 043324 166 AA---DLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTED----GMF--KT---LLLS-IFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 166 L~---el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~----~~~--~~---~~l~-~l~~~~~~~v~r~~~~~l~ 232 (788)
++ ..+ ++.++..++.+++.+||.++++++.+.+.+... +.. .+ .+++ +++.+++++++.++..|+.
T Consensus 152 ~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 152 VSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred Hhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 223 567888999999999999998877666544421 111 11 1122 2233344444444444444
Q ss_pred hhcccccc-cchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHH-HHHHHHHHHHHHhHHHHHHHhhh
Q 043324 233 TKSRNQKF-INNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRT-LLHKLTYAVHNFVLPSYFGFTGF 310 (788)
Q Consensus 233 ~~~~~~~~-~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~-l~ek~~~~~~~l~lplFFv~~G~ 310 (788)
++..+... ..+.++.+.++++++++.+++.+|.++++++|++|+++.+...+.+. -...+......++..++|+++|+
T Consensus 231 ~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa 310 (810)
T TIGR00844 231 RFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGS 310 (810)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 43321111 24566777788888889999999999999999999999975443222 12335566777889999999999
Q ss_pred ccccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCC
Q 043324 311 QFNISSLST----IDNVIVALVMVSLSIAGKILGTLLACYYL--KIPLNIEAVILAFILNLKGHADLVVVDASPNSEK 382 (788)
Q Consensus 311 ~idl~~l~~----~~~~~~~~~i~~~~~~~K~~~~~l~~~~~--~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~i 382 (788)
.+....+.. ...|..+++.+++.++.|+.++++...+. ..+++ |++++|| ..+||..++.++.++++.+.
T Consensus 311 ~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~r-ErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 311 ILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWR-EAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred hhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHH-HHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 998766642 12466666677777888988888765544 36899 9999999 89999999999999877654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.95 E-value=2.2e-25 Score=256.68 Aligned_cols=327 Identities=15% Similarity=0.185 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 043324 26 GILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMK 105 (788)
Q Consensus 26 lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~ 105 (788)
.+++++.....+++|+|+|.+++++++|+++||..++.... + + . +.+..+++.+++|..|+++|++.+|
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~----~--~--~---~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVP----L--D--R---EIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCC----C--C--H---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44455566678999999999999999999999864332111 1 1 1 2344578899999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHH
Q 043324 106 RNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSL 185 (788)
Q Consensus 106 ~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~ 185 (788)
++++....+++.++++|++++....+++.++ ++..++++|+++|+|+++++.+++++.+ .+++..+++.++++
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~~~l------~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESl 146 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWILGI------PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESL 146 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhh
Confidence 9999999999999999998877666655555 7889999999999999999999999987 46788899999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-Cc--hhHH---HH-HHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHH
Q 043324 186 INEMSCSLLFSLVVAFTED-GM--FKTL---LL-SIFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLLILVLLISVSM 258 (788)
Q Consensus 186 i~D~~~~ill~l~~~~~~~-~~--~~~~---~l-~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~ 258 (788)
+||..+++++.+...+..+ +. .... .. ..+.++++++++.++..|+.|+..+. +.....+++++.+++++
T Consensus 147 lND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~ 223 (525)
T TIGR00831 147 LNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFL 223 (525)
T ss_pred hcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHH
Confidence 9999999999988877653 21 1111 11 12234445555666666666554332 34456778888999999
Q ss_pred HHHHhChhhHHHHHHHHhhccCCCch------hHHHHHHHHHHHHHHhHHHHHHHhhhccccccc--cc-hh-H-----H
Q 043324 259 IIESSGLYSTVHCFLVGMMFPREGKT------TRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSL--ST-ID-N-----V 323 (788)
Q Consensus 259 ~~e~~G~~~~lGaflaGL~l~~~~~~------~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l--~~-~~-~-----~ 323 (788)
++|.+|.|+++++|++|+++++..+. .+...+.++..+..++.+++|+++|+++..... .. .. . +
T Consensus 224 lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~ 303 (525)
T TIGR00831 224 LAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVIL 303 (525)
T ss_pred HHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 99999999999999999999975432 122245667778889999999999999864111 10 00 0 1
Q ss_pred HH---HHHHHHHHHHHHHHHHHHH--HHH-----hCCCchHHHHHHHHHHhhHHHHHHHHHh
Q 043324 324 IV---ALVMVSLSIAGKILGTLLA--CYY-----LKIPLNIEAVILAFILNLKGHADLVVVD 375 (788)
Q Consensus 324 ~~---~~~i~~~~~~~K~~~~~l~--~~~-----~~~~~~~~a~~lglll~~kG~~~li~~~ 375 (788)
.. .+++.......|++..+.. .++ .+++|| +...++| ...||.++++++.
T Consensus 304 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r-~~~v~~w-~G~RG~vslA~al 363 (525)
T TIGR00831 304 ALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTR-WKHVVSW-AGLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChh-hHHHhee-ccchHHHHHHHHH
Confidence 00 1111222334555433322 111 247899 9999999 7899999998875
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.4e-21 Score=215.17 Aligned_cols=340 Identities=18% Similarity=0.193 Sum_probs=265.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhc
Q 043324 19 STCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLE 98 (788)
Q Consensus 19 ~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle 98 (788)
..++++.+++.++.+...+.+|++.|.+..+++.|++.||.+++...+... +. -+.+-.+++..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~-~~-------~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLE-LD-------PELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccccc-CC-------hHHHHHHHHHHHHHHhHhc
Confidence 456788888889999999999999999999999999999988887665111 11 1223388999999999999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhH
Q 043324 99 FDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGR 178 (788)
Q Consensus 99 ~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~ 178 (788)
+|.+.+|++++....+++.+++++.+......+++.+ ..++..++.+|+++|+|++.++.++.++.+ .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999988776666665532 236789999999999999999999999866 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-Cch--hHHH---HH-HH----HHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 043324 179 LAMSSSLINEMSCSLLFSLVVAFTED-GMF--KTLL---LS-IF----LTASLILVNCYLVIWFNTKSRNQKFINNSQVL 247 (788)
Q Consensus 179 l~ls~a~i~D~~~~ill~l~~~~~~~-~~~--~~~~---l~-~l----~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~ 247 (788)
+..+++++||..+++++.+...+..+ +.. .... ++ .+ ++.+.+++.+++.+++.++... .......
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~---~~~~~~~ 228 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWT---SPLLETL 228 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---chHHHHH
Confidence 99999999999999999988887663 221 2211 11 12 2233444445555555544311 1455677
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHhhcc-----CCCchh-HHHHHHHHHHHHHHhHHHHHHHhhhccccccccchh
Q 043324 248 LILVLLISVSMIIESSGLYSTVHCFLVGMMFP-----REGKTT-RTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTID 321 (788)
Q Consensus 248 ~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~-----~~~~~~-~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~ 321 (788)
+.+...+..+.++|.+|.|++++.+++|+... +..+.. +...+.+++....++.-+.|+..|++++.......
T Consensus 229 i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~- 307 (429)
T COG0025 229 LTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL- 307 (429)
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-
Confidence 89999999999999999999999999998774 112222 33345577778888899999999999998777652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCchHHHHHHHHHHhhHHHHHHHHHhhcC
Q 043324 322 NVIVALVMVSLSIAGKILGTLLACYYLK------IPLNIEAVILAFILNLKGHADLVVVDASP 378 (788)
Q Consensus 322 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~------~~~~~~a~~lglll~~kG~~~li~~~~~~ 378 (788)
.+...++..+..+++|+++++...+..+ .+++ +++.+++ -++||.++++++....
T Consensus 308 ~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~-~~~~l~w-~G~RG~vsla~al~~p 368 (429)
T COG0025 308 GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWR-ERLFLSW-AGPRGVVSLALALLIP 368 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHH-HHHHHhh-cccccHHHHHHHHHch
Confidence 3566777888888999999999988843 7899 9999999 7999999999887654
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.1e-22 Score=209.10 Aligned_cols=380 Identities=14% Similarity=0.122 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHh
Q 043324 17 VVSTCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLG 96 (788)
Q Consensus 17 l~~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~G 96 (788)
...+++.-.+++.++.+.+.++.|+|.|..+-.+..|++.|--++|.++. ++ .++...++.++++.++|..|
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f-------dN-y~~Ay~vg~lALaiILfdgG 76 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF-------DN-YPFAYMVGNLALAIILFDGG 76 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc-------Cc-cHHHHHHHHHHHHHHhhcCc
Confidence 34455555577778888999999999999999999999999999998775 33 45566799999999999999
Q ss_pred hccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCch
Q 043324 97 LEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDV 176 (788)
Q Consensus 97 le~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 176 (788)
+..+++..|...++++.++..|++++-.+....++|+++. +|.+++++|+++.+|+.+.+..+|.+++ +|.++
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv 149 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERV 149 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhhh
Confidence 9999999999999999999999999988887788878777 8999999999999999999999998888 58899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcC-c-hhHHH-HH----HHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHH
Q 043324 177 GRLAMSSSLINEMSCSLLFSLVVAFTEDG-M-FKTLL-LS----IFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLLI 249 (788)
Q Consensus 177 G~l~ls~a~i~D~~~~ill~l~~~~~~~~-~-~~~~~-l~----~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~i 249 (788)
+.+...++--||.+++++...++.+..++ . ..+.. +. ..+.++.++.+.++..|+++|..-. +..|..++
T Consensus 150 ~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~ 226 (574)
T COG3263 150 ASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILA 226 (574)
T ss_pred hhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHH
Confidence 99999999999999988765555554433 1 21211 11 2355667788888999999987432 57788889
Q ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHH
Q 043324 250 LVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVM 329 (788)
Q Consensus 250 l~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i 329 (788)
+...++...+++.+|-|++++.+++|+++.|.+-..+.-.-++.+-...+.--+.|...|+.++.+.+... ..+.+++.
T Consensus 227 la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~i-avPailL~ 305 (574)
T COG3263 227 LAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPI-AIPAILLS 305 (574)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHh-hHHHHHHH
Confidence 99999999999999999999999999999965433344344555556677777889999999999888763 45556667
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 043324 330 VSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSF 409 (788)
Q Consensus 330 ~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~ 409 (788)
+...+++|.+++++...-++.++| |..+++| -.-||.++++++....-.|.=..+-.|++.-+.++++..+....+.+
T Consensus 306 l~mifvaRP~aV~l~l~Pfrf~~~-Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~ 383 (574)
T COG3263 306 LWMIFVARPLAVFLGLIPFRFNRR-EKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPW 383 (574)
T ss_pred HHHHHHHhHHHHHHhhcccccCcc-chheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchH
Confidence 778889999999999999999999 9999999 78999999999988776665423445677777778888777777777
Q ss_pred Hhchhhhh
Q 043324 410 IMRKQEVQ 417 (788)
Q Consensus 410 l~~~~~~~ 417 (788)
..++.+-.
T Consensus 384 ~a~~l~~i 391 (574)
T COG3263 384 AAKKLKVI 391 (574)
T ss_pred HHHhcccc
Confidence 66655433
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.90 E-value=1.5e-20 Score=216.64 Aligned_cols=366 Identities=11% Similarity=0.130 Sum_probs=250.9
Q ss_pred HHHHHH-HHhcc-CCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhh
Q 043324 31 SHLFHL-IFKPL-GQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNL 108 (788)
Q Consensus 31 ~~l~~~-l~~~l-~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~ 108 (788)
+.+... .-++. ++|..+..++.|+++|+...+....-...|. -+.+-.+.+..++|..|+++|.+.++++.
T Consensus 21 ~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~-------~~lf~~~~LPpIlFe~g~~l~~~~f~~n~ 93 (559)
T TIGR00840 21 AKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLD-------SSYFFLYLLPPIVLDAGYFMPQRNFFENL 93 (559)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcC-------HHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 333333 33444 4999999999999999865332110000111 13455678889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHHH
Q 043324 109 HLVTTVAYGGFMACGIFGAAISWFIIRELTI--SYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSLI 186 (788)
Q Consensus 109 ~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~--~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i 186 (788)
+..+.+++.+++++.++.....+++...... ...++..++.+|+++|+|++..+..++++.+ .+.++-.++.+++++
T Consensus 94 ~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESll 172 (559)
T TIGR00840 94 GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLL 172 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhh
Confidence 9999999999999887666555544322111 1236788999999999999999999999998 578899999999999
Q ss_pred HHHHHHHHHHHHHHHhhc--Cch--h---HHH----HHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 043324 187 NEMSCSLLFSLVVAFTED--GMF--K---TLL----LSIFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLLILVLLIS 255 (788)
Q Consensus 187 ~D~~~~ill~l~~~~~~~--~~~--~---~~~----l~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~ 255 (788)
||.++++++.++..+... +.. . ... ...+.+++++++..++..++.|+.... +.....+++++.++
T Consensus 173 NDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~~~yl 249 (559)
T TIGR00840 173 NDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFLISYL 249 (559)
T ss_pred hccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHH
Confidence 999999999888876542 111 1 111 111224455666666777777766432 24456678888889
Q ss_pred HHHHHHHhChhhHHHHHHHHhhccCC-----CchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHH
Q 043324 256 VSMIIESSGLYSTVHCFLVGMMFPRE-----GKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMV 330 (788)
Q Consensus 256 ~~~~~e~~G~~~~lGaflaGL~l~~~-----~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~ 330 (788)
++.++|.+|.|++++.+++|+++.+. .+..+.-.+.+...+..+...+.|+..|+.+-... .. ..|..+++.+
T Consensus 250 ~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~~-~~~~~i~~~l 327 (559)
T TIGR00840 250 SYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-HE-WNWAFVVATL 327 (559)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hh-HHHHHHHHHH
Confidence 99999999999999999999999642 22222334456666777888999999999763221 11 1344444455
Q ss_pred HHHHHHHHHHHHHHHHH------hCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHh--
Q 043324 331 SLSIAGKILGTLLACYY------LKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLM-- 402 (788)
Q Consensus 331 ~~~~~~K~~~~~l~~~~------~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i-- 402 (788)
++.++.|+++++..++. .+.+++ |.+.+++ ...||.++++++....+.+.-..+...+....++++|.++
T Consensus 328 ~~~ll~R~l~V~~~~~~~~~~~~~~~~~~-e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG 405 (559)
T TIGR00840 328 SFCVIYRVLGVRTLSWITNEFRPVEIPYK-DQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQG 405 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChh-hhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHH
Confidence 56678899888876654 357999 9999998 7889999999887554333321222333333333333333
Q ss_pred --HHHHHHHHh
Q 043324 403 --AGPVVSFIM 411 (788)
Q Consensus 403 --~~~lv~~l~ 411 (788)
.+|+++++.
T Consensus 406 ~T~~pl~~~L~ 416 (559)
T TIGR00840 406 GTIKPLVEVLK 416 (559)
T ss_pred hhHHHHHHHhC
Confidence 467766653
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.78 E-value=5.1e-16 Score=169.85 Aligned_cols=302 Identities=17% Similarity=0.231 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChhH-------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPF-------MKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTII 152 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~-------l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 152 (788)
...+.+.-+.+|.|.+|+|+..+. .||..- ...-+++|+++|.++-. .... ......--..
T Consensus 63 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~l-P~~aAlGGm~vPaliy~-----~~n~------~~~~~~~GW~ 130 (423)
T PRK14853 63 GTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAAL-PVAAALGGMIVPALIYV-----AVNL------AGGGALRGWA 130 (423)
T ss_pred HHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHH-HHHHHHHhHHHHHHHHH-----HHhC------Cchhhhhhhh
Confidence 344667777889999999995543 333322 24667888888875422 2222 1111122223
Q ss_pred HHhcccHHHHHHHHHhcCc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH-HHHHHHHHHHHHHHHHHHHH
Q 043324 153 IIANSASPVVIRLAADLKL-DTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTL-LLSIFLTASLILVNCYLVIW 230 (788)
Q Consensus 153 ~ls~Ts~~vv~~iL~el~l-l~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~-~l~~l~~~~~~~v~r~~~~~ 230 (788)
+-+.|+.+....+|..+|- .++..+...++.|++||+.+++++++++ ++..... +.+.+...++. |
T Consensus 131 Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~~a~~~~~~l--------~ 198 (423)
T PRK14853 131 IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALLLALVPLALF--------W 198 (423)
T ss_pred hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHHHHHHHHHHH--------H
Confidence 4567899999999999874 4889989999999999999999998877 2222111 11111111111 2
Q ss_pred HHhhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCC-----------chhHHHHHHHHHHHHHH
Q 043324 231 FNTKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREG-----------KTTRTLLHKLTYAVHNF 299 (788)
Q Consensus 231 l~~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~-----------~~~~~l~ek~~~~~~~l 299 (788)
+.++.+ +++.+.++++. +.+.+..+..|+|+.+|+|++|+++|... +..+++.++++.++..+
T Consensus 199 ~l~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ 272 (423)
T PRK14853 199 LLVQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGV 272 (423)
T ss_pred HHHHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHH
Confidence 222322 34455555553 36677999999999999999999999411 23567889999999999
Q ss_pred hHHHH-HHHhhhcccc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHH
Q 043324 300 VLPSY-FGFTGFQFNI-SSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKG 367 (788)
Q Consensus 300 ~lplF-Fv~~G~~idl-~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG 367 (788)
++|+| |+.+|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|+ +-..+|++-...=
T Consensus 273 ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~-~l~gv~~L~GIGF 351 (423)
T PRK14853 273 AVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWI-DVFGVALLAGIGF 351 (423)
T ss_pred HHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHH-HHHHHHHHHHHHH
Confidence 99999 9999999986 4342211112566778888999999988877764 47888 8888888777777
Q ss_pred HHHHHHHhhcCc-CCCCCChhhHHHHHHHHHHHHHhHHHHHHHHhch
Q 043324 368 HADLVVVDASPN-SEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIMRK 413 (788)
Q Consensus 368 ~~~li~~~~~~~-~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~~~ 413 (788)
.+++-+.+.+++ .... .++.--.+.+.++++.+++..+.+...++
T Consensus 352 TmSlFI~~LAf~~~~~~-~~~aKigil~~S~~s~~~G~~~l~~~~~~ 397 (423)
T PRK14853 352 TVSLLIGELAFGGGSAR-DDAVKVGVLTGSLIAALLASVLLRLRNRK 397 (423)
T ss_pred HHHHHHHHhhcCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888999884 3323 33344444556666666666666554444
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.2e-15 Score=156.47 Aligned_cols=346 Identities=12% Similarity=0.104 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhc
Q 043324 19 STCLQVCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLE 98 (788)
Q Consensus 19 ~~ll~i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle 98 (788)
.+...-+.+.+++...-++-+|+-+...+--.+.|+++||+++++..+..+ .+...+...++.+-+..-.|.++.|
T Consensus 14 al~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~w----gn~d~it~ei~RvvLcvqvfava~e 89 (467)
T KOG4505|consen 14 ALAASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSW----GNKDYITYEISRVVLCVQVFAVAME 89 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccc----cCcchhhhhhhhhhHhHHHHHHHHh
Confidence 344444455566666666677776666666678999999999998877211 1111223347888888899999999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcC---CCc
Q 043324 99 FDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLD---TSD 175 (788)
Q Consensus 99 ~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll---~s~ 175 (788)
+.-+.+.++++...++-..-++.-.++.++..|.+...+ +...++.++.++++|++.....+..+-+.. ..+
T Consensus 90 LPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-----nf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPer 164 (467)
T KOG4505|consen 90 LPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL-----NFLTSLLIAACITATDPILSSSIVGGGKFAKRVPER 164 (467)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHH
Confidence 999999999998877766666666666666666554221 567889999999999976666677655443 345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcC---chh-----HHHH-----HHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 043324 176 VGRLAMSSSLINEMSCSLLFSLVVAFTEDG---MFK-----TLLL-----SIFLTASLILVNCYLVIWFNTKSRNQKFIN 242 (788)
Q Consensus 176 ~G~l~ls~a~i~D~~~~ill~l~~~~~~~~---~~~-----~~~l-----~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~ 242 (788)
+..+..+++-.||.++++++-+..-+...+ ..+ ..++ ..+++.+++++.|...++..++.--+ .
T Consensus 165 iR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~ 241 (467)
T KOG4505|consen 165 IRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---R 241 (467)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---H
Confidence 666789999999999999887776654332 111 1122 12345566777777777766654433 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHH-HHHHHHHHHHhHHHHHHHhhhccccccccch-
Q 043324 243 NSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLL-HKLTYAVHNFVLPSYFGFTGFQFNISSLSTI- 320 (788)
Q Consensus 243 e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~-ek~~~~~~~l~lplFFv~~G~~idl~~l~~~- 320 (788)
|+++.+-+++.+.++.+.+.+|.+..+-.|.||.+++++.-+.++.. .++..+...++.-.||++.|..++++.++..
T Consensus 242 eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~ 321 (467)
T KOG4505|consen 242 ESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSV 321 (467)
T ss_pred HHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcc
Confidence 88999999999999999999999999999999999998776654433 3455566667777899999999998877532
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCchHHHHHHHHHHhhHHHHHHHHHhhcC
Q 043324 321 ---DNVIVALVMVSLSIAGKILGTLLACYYL-K-IPLNIEAVILAFILNLKGHADLVVVDASP 378 (788)
Q Consensus 321 ---~~~~~~~~i~~~~~~~K~~~~~l~~~~~-~-~~~~~~a~~lglll~~kG~~~li~~~~~~ 378 (788)
..|-.+++-+.+.+.-|+.++++.-.+. . .+|| |++++|. ..|.|.-++..+..+.
T Consensus 322 ~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswk-EALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 322 EGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWK-EALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred cCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHH-HHHHhcc-CCCccHHHHHHHHHHH
Confidence 2566666666666666666665532221 1 3689 9999999 8999988887776654
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.9e-13 Score=152.14 Aligned_cols=378 Identities=15% Similarity=0.184 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHhccC---CChhHHHHHHHHhhchhhhcccccc-c-----ccccCCChHHHHHHHHHHHHHHHHHH
Q 043324 24 VCGILVVSHLFHLIFKPLG---QPGPVAQVLAGLVLGPTLLCRIYVI-E-----RFFIKPNSAEYYRFYAFFARIFFMFL 94 (788)
Q Consensus 24 i~lil~~~~l~~~l~~~l~---~P~ii~~IlaGilLGP~~lg~i~~~-~-----~~f~~~~~~~~~~~l~~igl~lllF~ 94 (788)
.+.++.++.+.+++++.-| +|.-+.-++.|+++|-......... + ..|.|+ .+-.+-+-.+.|.
T Consensus 40 ~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~-------~ff~vLLPpiif~ 112 (575)
T KOG1965|consen 40 FILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPD-------LFFLVLLPPIIFN 112 (575)
T ss_pred HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEeccc-------HHHHHhhchhhhc
Confidence 3445566778899999888 9999999999999996443221111 1 134332 2444556668899
Q ss_pred HhhccChhHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCC
Q 043324 95 LGLEFDVPFMKRNLHLVTTVAYGGFMACG-IFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDT 173 (788)
Q Consensus 95 ~Gle~d~~~l~~~~~~~~~i~~~~~~ip~-~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~ 173 (788)
.|.+++.+.++++......+++.|..+.. ++|.++.++.. .......++..++.+|+++|+|+|..+..+++|++ ..
T Consensus 113 sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-vd 190 (575)
T KOG1965|consen 113 SGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-VD 190 (575)
T ss_pred ccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-CC
Confidence 99999999999999999999988877654 45554444322 11222457889999999999999999999999999 45
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH----HH---HHH-HHHHHHHHHHHHHHHHHHhhcccccccchhH
Q 043324 174 SDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKT----LL---LSI-FLTASLILVNCYLVIWFNTKSRNQKFINNSQ 245 (788)
Q Consensus 174 s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~----~~---l~~-l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~ 245 (788)
..+-.++-+++++||.++++++..+..........+ .+ +.. .....++...+.+...+.|...-++ .....
T Consensus 191 ~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~-~~~lE 269 (575)
T KOG1965|consen 191 PKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR-TPSLE 269 (575)
T ss_pred cceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcHHH
Confidence 677789999999999999999998887765431111 11 111 1122233333333333333322221 23456
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCC-----chhHHHHHHHHHHHHHHhHHHHHHHhhhc-cccccccc
Q 043324 246 VLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREG-----KTTRTLLHKLTYAVHNFVLPSYFGFTGFQ-FNISSLST 319 (788)
Q Consensus 246 ~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~-----~~~~~l~ek~~~~~~~l~lplFFv~~G~~-idl~~l~~ 319 (788)
..+.+++....++++|.+|+++++..+.+|+.+++.. +..+.-.+.+......+.--+-|+++|+. ++......
T Consensus 270 ~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~ 349 (575)
T KOG1965|consen 270 SALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVY 349 (575)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceee
Confidence 7788899999999999999999999999999999642 22233344555556566666779999963 33333322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCchHHHHHHHHHHhhHHHHHHHHHhhcC-cCC-CCCChh
Q 043324 320 IDNVIVALVMVSLSIAGKILGTLLACYYLK----------IPLNIEAVILAFILNLKGHADLVVVDASP-NSE-KWWGED 387 (788)
Q Consensus 320 ~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~----------~~~~~~a~~lglll~~kG~~~li~~~~~~-~~~-il~~~~ 387 (788)
.....+....++.+++|..-.+-.+.+.+ +|.+ +-..+.|.=.-||.++++++.--. +.+ -. .+.
T Consensus 350 -~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~-~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~-~q~ 426 (575)
T KOG1965|consen 350 -KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDK-YQVIMWWAGGLRGAVSFALALGDFTDSPHTG-GQT 426 (575)
T ss_pred -echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChH-HhhHhHhhhhhhHHHHHHHHhhhcccccccc-ccE
Confidence 11223444455556677666554444432 3334 445555544479999988875321 110 01 122
Q ss_pred hHHHHHHHHHHH----HHhHHHHHHHHhchh
Q 043324 388 IRRLLLSVIVLN----TLMAGPVVSFIMRKQ 414 (788)
Q Consensus 388 ~~~~lv~~~llt----t~i~~~lv~~l~~~~ 414 (788)
+++..+..+++| -..+.|+++++-...
T Consensus 427 i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~ 457 (575)
T KOG1965|consen 427 IFTTTLVVVLFTVLVFGGSTKPMLSYLMISV 457 (575)
T ss_pred EEEeeeeeeeeeeeeeCCccHHHHHHhcccc
Confidence 333333334444 445788888876543
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.48 E-value=4.2e-12 Score=136.75 Aligned_cols=270 Identities=16% Similarity=0.230 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+.-+.+|.|.+|+|+..+.+. ++.|+ ...-+++|+++|.++=. .... +. ....-.+|+
T Consensus 53 ~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~-----~~n~-~~----~~~~~GW~I- 121 (373)
T TIGR00773 53 LHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYL-----AFNA-ND----PITREGWAI- 121 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh-----heec-CC----CcccCcccc-
Confidence 34466777788999999999877663 22233 34567788888865322 2121 10 000111221
Q ss_pred HhcccHHHHHHHHHhcC-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLK-LDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~-ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
-..|+.+....++.=+| .....+-...++-+++||+.++++.++++. ++..... +... ...+. ..++.
T Consensus 122 P~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~--L~~a-~~~~~----~l~~~ 190 (373)
T TIGR00773 122 PAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAA--LLVA-AVAIA----VLAVL 190 (373)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHH--HHHH-HHHHH----HHHHH
Confidence 22344333333343332 244556678899999999999999887762 2221111 1111 11111 11222
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchh----HHHHHHHHHHHHHHhHHHH-HHH
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTT----RTLLHKLTYAVHNFVLPSY-FGF 307 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~----~~l~ek~~~~~~~l~lplF-Fv~ 307 (788)
+|.. +++...+.++. ++..++ ....|+|+.+|+|++|+++|...+.. +++.+.++.++..+++|+| |+.
T Consensus 191 ~~~~----v~~~~~y~~lg-vllW~~-~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFan 264 (373)
T TIGR00773 191 NRCG----VRRLGPYMLVG-VILWFA-VLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFAN 264 (373)
T ss_pred HHcC----CchhhHHHHHH-HHHHHH-HHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3322 23333433333 222333 37999999999999999999754433 3344444445888899999 999
Q ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHHHHHHHHHhhc
Q 043324 308 TGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKGHADLVVVDAS 377 (788)
Q Consensus 308 ~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG~~~li~~~~~ 377 (788)
.|.++|...+... .......+++..+++|.+|++..++.. +++|+ +-.-+|++-...=.+++-+.+.+
T Consensus 265 AGv~l~~~~~~~~-~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~-~~~gv~~L~GIGFTmSlfI~~LA 342 (373)
T TIGR00773 265 AGVSLQGVSLNGL-TSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFK-QIFAVGVLCGIGFTMSIFIASLA 342 (373)
T ss_pred cCeeeecCcchhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987655432 223467788889999999999887764 46788 88888887666677888888888
Q ss_pred Cc
Q 043324 378 PN 379 (788)
Q Consensus 378 ~~ 379 (788)
++
T Consensus 343 f~ 344 (373)
T TIGR00773 343 FG 344 (373)
T ss_pred cC
Confidence 84
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.19 E-value=2e-09 Score=117.88 Aligned_cols=297 Identities=13% Similarity=0.154 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+..+.+|.|.+|+|+.-+.+. ++.|+ ...-+++|+++|.++= +.... +. ...-.+|+
T Consensus 69 ~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY-----~~~n~-~~-----~~~~GWgI- 136 (438)
T PRK14856 69 HNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIY-----FFLNA-DT-----PSQHGFGI- 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHH-----hheec-CC-----CccCcccc-
Confidence 34467788888999999999877653 22232 3456778888886532 12221 10 11122222
Q ss_pred HhcccHHHHHHHHHhcC-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLK-LDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~-ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
-..|+.+....++.=+| ...+.+-...++-|++||+.+++++++++. +..... +++.. ++.+.. .++.
T Consensus 137 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~--~L~~a-~~~~~~----l~~l 205 (438)
T PRK14856 137 PMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFA--WLLGA-LGVVLV----LAVL 205 (438)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHH--HHHHH-HHHHHH----HHHH
Confidence 22345444444444333 134456677899999999999999887762 222111 11111 111111 1222
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCch----------------------------
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKT---------------------------- 284 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~---------------------------- 284 (788)
+|.. ++....++++. +..-+....-|+|+.++..++|+++|-.++.
T Consensus 206 n~~~----v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T PRK14856 206 NRLN----VRSLIPYLLLG--VLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQQ 279 (438)
T ss_pred HHcC----CccccHHHHHH--HHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccchh
Confidence 2221 22333333333 3345566688999999999999999953221
Q ss_pred ----------------hHHHHHHHHHHHHHHhHHHH-HHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 285 ----------------TRTLLHKLTYAVHNFVLPSY-FGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYY 347 (788)
Q Consensus 285 ----------------~~~l~ek~~~~~~~l~lplF-Fv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~ 347 (788)
.+++.+.+..++..+.+|+| |+..|..++...... .-.....+++..++||.+|++..++.
T Consensus 280 ~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI~~~s~l 357 (438)
T PRK14856 280 EILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGIFLITFI 357 (438)
T ss_pred hhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHHHHHHHH
Confidence 02233445556777899999 999999997543221 12345667778889999999888776
Q ss_pred h----------CCCchHHHHHHHHHHhhHHHHHHHHHhhcCcC--CCCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 043324 348 L----------KIPLNIEAVILAFILNLKGHADLVVVDASPNS--EKWWGEDIRRLLLSVIVLNTLMAGPVVSF 409 (788)
Q Consensus 348 ~----------~~~~~~~a~~lglll~~kG~~~li~~~~~~~~--~il~~~~~~~~lv~~~lltt~i~~~lv~~ 409 (788)
. |++|+ +-.-+|++-...=.+++-+++.+++. .-. .++.-..+++.++++.+++..+.++
T Consensus 358 avkl~~a~lP~g~~w~-~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~-~~~aKigIL~gS~lsai~G~~~L~~ 429 (438)
T PRK14856 358 SEKLKITARPKGISWW-HILGAGLLAGIGFTMSMFISNLAFTSEHKDA-MEVAKIAILLGSLISGIIGALYLFA 429 (438)
T ss_pred HHHhCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46788 88888887666677888888888843 323 3333334445555666555555553
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.09 E-value=1.4e-08 Score=109.83 Aligned_cols=297 Identities=16% Similarity=0.189 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+.-+.+|.|.+|+|+.-+.+. ++.|+ ...-+++|+++|.++=.. ... +.+ ...-.+|+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~-----~n~-g~~----~~~~GWgI- 128 (389)
T PRK09560 60 LHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAA-----FNY-NNP----ETLRGWAI- 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhe-----eec-CCC----cccCcccc-
Confidence 34467777888999999999877653 22232 355677888888654221 111 100 00111222
Q ss_pred HhcccHHHHHHHHHhcC-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLK-LDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~-ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
-..|+.+....++.=+| .....+-...++-+++||+.++++.++++. ++ .... +++..+ ..+. ..++.
T Consensus 129 PmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~-i~~~--~L~~a~-~~~~----~l~~l 197 (389)
T PRK09560 129 PAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD-LSLP--ALALAA-IAIA----VLFLL 197 (389)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC-CCHH--HHHHHH-HHHH----HHHHH
Confidence 22344444444444332 144555677889999999999999887762 22 2111 111111 1111 11122
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCch------hHHHHHHHHHHHHHHhHHHH-H
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKT------TRTLLHKLTYAVHNFVLPSY-F 305 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~------~~~l~ek~~~~~~~l~lplF-F 305 (788)
+|.. ++....+..+. +..-+....-|+|+.++..++|+++|...+. .+++.++++.++..+.+|+| |
T Consensus 198 n~~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAl 271 (389)
T PRK09560 198 NRLG----VTKLTPYLIVG--AILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAF 271 (389)
T ss_pred HHcC----CccchHHHHHH--HHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHh
Confidence 2221 23333444433 3345556678999999999999999963221 24566777777777889999 8
Q ss_pred HHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHHHHHHHHHh
Q 043324 306 GFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKGHADLVVVD 375 (788)
Q Consensus 306 v~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG~~~li~~~ 375 (788)
...|..++-..+... .-.....+++..++||.+|.+..+++. +++|+ +-.-+|++-...=.+++-+++
T Consensus 272 aNAGV~l~~~~~~~~-~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~-~l~gv~~L~GIGFTmSLFIa~ 349 (389)
T PRK09560 272 ANAGVSLAGISLSSL-TSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWK-QIYGVSVLCGIGFTMSLFIGS 349 (389)
T ss_pred hcCCeeecCCcHHhc-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 899998843223221 112455677788899999998887764 46788 888888876666778888888
Q ss_pred hcCc-CCCCCChhhHHHHHHHHHHHHHhHHHHH
Q 043324 376 ASPN-SEKWWGEDIRRLLLSVIVLNTLMAGPVV 407 (788)
Q Consensus 376 ~~~~-~~il~~~~~~~~lv~~~lltt~i~~~lv 407 (788)
.++. ..-. .++.-..+.+.++++.+++..+.
T Consensus 350 LAF~~~~~~-~~~aKigIL~~S~~aai~g~~~l 381 (389)
T PRK09560 350 LAFGASEEL-LTEARLGILLGSLLSAILGYLLL 381 (389)
T ss_pred hhcCCCchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 8883 2112 22333333344445444444444
No 22
>PRK11175 universal stress protein UspE; Provisional
Probab=99.08 E-value=2.3e-09 Score=116.08 Aligned_cols=186 Identities=11% Similarity=0.125 Sum_probs=114.7
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
|||+|..+.+.....++.+-.++...+ .+++.+|.++-.....+. .......+... .....+.+..+ .++.+.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~~~--a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l--~~~~~~ 77 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQRNG--GKITAFLPIYDFSYEMTT-LLSPDEREAMR--QGVISQRTAWI--REQAKP 77 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHhcC--CCEEEEEeccCchhhhhc-ccchhHHHHHH--HHHHHHHHHHH--HHHHHH
Confidence 699999998887877777777764433 467888877532211000 00000000000 00000011111 122222
Q ss_pred hhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEecCC
Q 043324 515 FSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDRG 594 (788)
Q Consensus 515 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdRg 594 (788)
+ +..+++++...... .+.++.|++.|+++++|+||+|+|++....+. .++..-+++++++||+|-+.-++.
T Consensus 78 ~-~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~~~~ 148 (305)
T PRK11175 78 Y-LDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVKDQD 148 (305)
T ss_pred H-hhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEecccc
Confidence 2 23456666544432 46789999999999999999999976443322 345567899999999986653321
Q ss_pred CcccccccCCCCccEEEEEccCCccH-------HHHHHHHHHHhhCC-ceEEEEEEccc
Q 043324 595 CLEFQRLLAPDSLQSVATLFFGGPDD-------REAIACSKRLAMHH-HLNLTVIRFLP 645 (788)
Q Consensus 595 ~~~~~~~~~~~~~~~i~v~f~GG~DD-------reAL~~a~rma~~~-~v~ltv~r~~~ 645 (788)
. . ...+|+++.=+++++ ..|+++|.++|+.. +++++++|+.+
T Consensus 149 ~---~------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~ 198 (305)
T PRK11175 149 W---P------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYP 198 (305)
T ss_pred c---C------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEec
Confidence 1 1 136899998876542 67999999999987 99999999975
No 23
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=2.3e-08 Score=107.52 Aligned_cols=297 Identities=15% Similarity=0.168 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+.-+.+|.|.+|+|+..+.+. ++.|+ ...-+++|+++|.++=.. ... ++ ...-.+|+
T Consensus 57 ~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~-----~n~-~~-----~~~~GW~I- 124 (383)
T PRK14854 57 MHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS-----INH-DI-----KVINGWAI- 124 (383)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh-----hcc-CC-----cccCcccc-
Confidence 34466777778999999999877653 22233 355677888888654222 121 11 00111221
Q ss_pred HhcccHHHHHHHHHhcC-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLK-LDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~-ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
-..|+.+....++.=+| .....+--..++-+++||+.++++.++++ +++.....+.... ..+..-.+ +.
T Consensus 125 P~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~~A~---~~~~~l~~---~n 194 (383)
T PRK14854 125 PSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY----TKSLSLLSLSLGT---LFILAMII---CN 194 (383)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCCccHHHHHHHH---HHHHHHHH---HH
Confidence 22334333333333332 24455556778889999999999988776 2222221111111 11111111 22
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCch----hHHHHHHHHHHHHHHhHHHH-HHH
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKT----TRTLLHKLTYAVHNFVLPSY-FGF 307 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~----~~~l~ek~~~~~~~l~lplF-Fv~ 307 (788)
|+.. ++....+.++. +..-+....-|+|+.++..+.|+++|...+. .+++.++++.++..+.+|+| |+.
T Consensus 195 r~~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aN 268 (383)
T PRK14854 195 RIFK----INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFAN 268 (383)
T ss_pred HhcC----CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhc
Confidence 2111 22333333333 3345566788999999999999999963211 24566777778888999999 899
Q ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHHHHHHHHHhhc
Q 043324 308 TGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKGHADLVVVDAS 377 (788)
Q Consensus 308 ~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG~~~li~~~~~ 377 (788)
.|..++-..+... .-.....+++..++||.+|.+..++.. +++|+ +-.-+|++-...=.+++-+++.+
T Consensus 269 AGV~l~~~~~~~~-~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~-~l~gv~~L~GIGFTmSLFIa~LA 346 (383)
T PRK14854 269 AGISFSGISFSIL-FEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNL-QLYGISLLCGIGFTMSLFIGVLA 346 (383)
T ss_pred CCeeeccCcHHhh-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988842222211 122455677778899999998887764 46788 88888887777778888888888
Q ss_pred CcCCCCCChhhHHHHHHHHHHHHHhHHHHH
Q 043324 378 PNSEKWWGEDIRRLLLSVIVLNTLMAGPVV 407 (788)
Q Consensus 378 ~~~~il~~~~~~~~lv~~~lltt~i~~~lv 407 (788)
++..-. .++.--.+.+.++++.+++..+.
T Consensus 347 F~~~~~-~~~aKigIL~gS~~aai~G~~~l 375 (383)
T PRK14854 347 FNDTHL-LNAIKIGVVVGSVLSGFFGYIVL 375 (383)
T ss_pred CCCcch-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 853212 22333333344455554444333
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.07 E-value=1.5e-08 Score=109.41 Aligned_cols=270 Identities=14% Similarity=0.190 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+.-+.+|.|.+|+|+..+.+. ++.|+ ...-+++|+++|.++=. .... +.+ ...-.+|+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~-----~~n~-~~~----~~~~GWaI- 128 (388)
T PRK09561 60 LLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYL-----LFNY-ADP----VTREGWAI- 128 (388)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHh-----heec-CCC----cccCcccc-
Confidence 34467777888999999999887763 22233 34567788888865322 1121 100 00111221
Q ss_pred HhcccHHHHHHHHHhcC-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLK-LDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~-ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
-..|+.+....++.=+| .....+-...++-+++||+.+++++++++ ++...+..+..... .+. ..++.
T Consensus 129 P~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~i~~~~L~~a~~---~~~----~l~~l 197 (388)
T PRK09561 129 PAATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY----TSDLSMVSLGVAAV---AIA----VLAVL 197 (388)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec----CCCccHHHHHHHHH---HHH----HHHHH
Confidence 22344444444443332 24455567889999999999999988776 22222211111111 111 11122
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCch----hHHHHHHHHHHHHHHhHHHH-HHH
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKT----TRTLLHKLTYAVHNFVLPSY-FGF 307 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~----~~~l~ek~~~~~~~l~lplF-Fv~ 307 (788)
+|.. ++....+.++. +..-+.....|+|+.++..+.|+++|...+. .+++.++++.++..+.+|+| |+.
T Consensus 198 n~~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaN 271 (388)
T PRK09561 198 NLCG----VRRTSVYILVG--VVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFAN 271 (388)
T ss_pred HHcC----CccchHHHHHH--HHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhc
Confidence 2221 23333444433 3345566678999999999999999963221 24567777778888899999 889
Q ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHHHHHHHHHhhc
Q 043324 308 TGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKGHADLVVVDAS 377 (788)
Q Consensus 308 ~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG~~~li~~~~~ 377 (788)
.|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|+ +-.-+|++-...=.+++-+.+.+
T Consensus 272 AGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~-~l~gv~~L~GIGFTmSLFIa~LA 349 (388)
T PRK09561 272 AGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFK-QIYAVGVLCGIGFTMSIFIASLA 349 (388)
T ss_pred CCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 998883222221 1112455677778899999998887764 46788 88888886666667888888888
Q ss_pred Cc
Q 043324 378 PN 379 (788)
Q Consensus 378 ~~ 379 (788)
++
T Consensus 350 F~ 351 (388)
T PRK09561 350 FG 351 (388)
T ss_pred cC
Confidence 85
No 25
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.06 E-value=1.7e-08 Score=110.21 Aligned_cols=293 Identities=14% Similarity=0.160 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+--+.+|.|.+|+|+.-+.+. ++.|+ ...-+++|+++|.++=. .... +. + ..-.+|+
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~-----~~n~-~~---~--~~~GWgI- 131 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYT-----ALNA-GG---P--GASGWGV- 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHh-----eeec-CC---C--ccCcccc-
Confidence 34466777788999999999887663 22233 34567778888864321 2121 10 0 1122222
Q ss_pred HhcccHHHHHHHHHhcCc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLKL-DTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~l-l~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
-..|+.+....++.=+|- ....+-...++-|++||+.++++.++++. ++ .... +++.. +..+. ..++.
T Consensus 132 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~-i~~~--~L~~a-~~~~~----~l~~l 200 (423)
T PRK14855 132 PMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SG-LNLL--ALLLA-ALTWA----LALLA 200 (423)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CC-CCHH--HHHHH-HHHHH----HHHHH
Confidence 233454444445444431 33456677899999999999999887762 22 2111 11111 11111 11122
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCc-h---------------------------
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGK-T--------------------------- 284 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~-~--------------------------- 284 (788)
+|.. ++....++++. +...+.....|+|+.++..+.|+++|..++ .
T Consensus 201 n~~~----v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (423)
T PRK14855 201 GRLG----VTSLKIYAVLG--ALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLE 274 (423)
T ss_pred HHcC----CccccHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhh
Confidence 2221 22333333333 334556667899999999999999996311 1
Q ss_pred ---------hHHHHHHHHHHHHHHhHHHH-HHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 043324 285 ---------TRTLLHKLTYAVHNFVLPSY-FGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL------ 348 (788)
Q Consensus 285 ---------~~~l~ek~~~~~~~l~lplF-Fv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~------ 348 (788)
.+++.+++..++..+.+|+| |+..|..++-.. .. .....+++..++||.+|.+..++..
T Consensus 275 ~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a 349 (423)
T PRK14855 275 DLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAVRLGLA 349 (423)
T ss_pred hhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Confidence 12345555666777899999 889999884333 22 2345567778899999998887764
Q ss_pred ----CCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 043324 349 ----KIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVS 408 (788)
Q Consensus 349 ----~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~ 408 (788)
+++|+ +-.-+|++-...=.+++-+++.+++..-. -++.-..+.+.++++.+++..+.+
T Consensus 350 ~lP~g~~w~-~l~gv~~LaGIGFTmSLFIa~LAF~~~~~-~~~aKigIL~~S~~aai~G~~~L~ 411 (423)
T PRK14855 350 SLPRRVNWL-HMLGAGLLAGIGFTMSLFISNLAFADAAL-LTQAKLGVLAASVLAALLGAGWLW 411 (423)
T ss_pred CCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHhhCCCchh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888 88888887777778888888888853323 333333344455555555544443
No 26
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.7e-07 Score=97.19 Aligned_cols=288 Identities=15% Similarity=0.226 Sum_probs=165.1
Q ss_pred HHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHH
Q 043324 87 ARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASP 160 (788)
Q Consensus 87 gl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~ 160 (788)
-+..|.+.+|+|+..+.+. +++++ ...-+++|++.|.++ |.+... . .+...---.+-+.|+.+
T Consensus 70 LMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y~~~n~-~-----~p~~~~GWaIP~ATDiA 138 (390)
T COG3004 70 LMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----YLALNA-G-----DPATLEGWAIPMATDIA 138 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----hheeec-C-----ChhhhcCcCcccHHHHH
Confidence 3345778899999988774 23333 344566677777543 112122 1 11111111223345555
Q ss_pred HHHHHHHhcC-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 043324 161 VVIRLAADLK-LDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFNTKSRNQK 239 (788)
Q Consensus 161 vv~~iL~el~-ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~~~~~~~~ 239 (788)
....++.=++ ...+.+--..++-+++||+-++++.++... .......+..... .+.+-..++|+.-
T Consensus 139 FAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~Ls~~al~~a~~---~i~vL~~lN~~~v------ 205 (390)
T COG3004 139 FALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TDLSMAALGIAAL---AIAVLAVLNRLGV------ 205 (390)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CCccHHHHHHHHH---HHHHHHHHHHhCc------
Confidence 5555554432 345666667889999999999998887762 2121111111111 1111111222211
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchh----HHHHHHHHHHHHHHhHHHH-HHHhhhccc-
Q 043324 240 FINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTT----RTLLHKLTYAVHNFVLPSY-FGFTGFQFN- 313 (788)
Q Consensus 240 ~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~----~~l~ek~~~~~~~l~lplF-Fv~~G~~id- 313 (788)
+....+++..++ ..+.-..-|+|..++..+.|+.+|-..+.+ +++.+.+...+..+.+|+| |...|..++
T Consensus 206 --~~l~~Y~~~gvi--LW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g 281 (390)
T COG3004 206 --RRLSPYLLVGVI--LWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQG 281 (390)
T ss_pred --hhhhHHHHHHHH--HHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccc
Confidence 111122222222 223344679999999999999999654333 4555556666777889999 999998877
Q ss_pred --cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCC
Q 043324 314 --ISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKGHADLVVVDASPNSE 381 (788)
Q Consensus 314 --l~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~ 381 (788)
...+.+ ...+.+++..+++|.+|.+..++.. +.+|+ +-..++++....=.+++-+...+++..
T Consensus 282 ~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~-qi~~v~iLcGIGFTMSlFI~~LAf~~~ 356 (390)
T COG3004 282 VSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWK-QIYGVSILCGIGFTMSLFIASLAFGSE 356 (390)
T ss_pred cccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHH-HHHHHHHHHhhhHHHHHHHHHHhcCCh
Confidence 333433 3346677788899999998887764 56788 888888877666778888888887652
Q ss_pred -CCCChhhHHHHHHHHHHHHHhHHHHHH
Q 043324 382 -KWWGEDIRRLLLSVIVLNTLMAGPVVS 408 (788)
Q Consensus 382 -il~~~~~~~~lv~~~lltt~i~~~lv~ 408 (788)
.+ ....--.+.+.+.++.+++-...+
T Consensus 357 ~~~-~~~~klgIL~gS~~Sai~G~~~L~ 383 (390)
T COG3004 357 DEL-QTAAKLGILVGSFISAILGYSYLR 383 (390)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222323333444444444443333
No 27
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.90 E-value=6.3e-09 Score=112.22 Aligned_cols=274 Identities=16% Similarity=0.224 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFMK---RNLHL---VTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l~---~~~~~---~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+.-+.+|.|.+|+|+..+.+. ++.|+ ...-+++|+++|.++ |+.... + .....-.+| +
T Consensus 56 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI-----yl~~n~-~----~~~~~~GW~-I 124 (378)
T PF06965_consen 56 HHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI-----YLAFNA-G----GPEAAHGWA-I 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG---S----STTHHHHTS-S
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH-----Hheeec-C----CCCcCceEE-e
Confidence 34567777888999999999877653 22232 345567777777543 112222 0 111122222 2
Q ss_pred HhcccHHHHHHHHHhcCc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLKL-DTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~l-l~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
-..|+.+....++.=++- .....-...++-+++||+.++++.++++. +.... .+++..+. .+. ..|..
T Consensus 125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~--~~L~~a~~-~~~----~l~~l 193 (378)
T PF06965_consen 125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISL--LWLLLAAA-ALL----LLFVL 193 (378)
T ss_dssp SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------H--HHHHHHHH-HHH----HHHHH
T ss_pred cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCH--HHHHHHHH-HHH----HHHHH
Confidence 334565555555554432 34456678899999999999999888763 11211 11111111 111 11222
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchh--------HHHHHHHHHHHHHHhHHHH
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTT--------RTLLHKLTYAVHNFVLPSY 304 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~--------~~l~ek~~~~~~~l~lplF 304 (788)
+|.. ++....+..+. +..-+.....|+|+.++..+.|+++|..++.+ +++.++++.++..+.+|+|
T Consensus 194 ~r~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlF 267 (378)
T PF06965_consen 194 NRLG----VRSLWPYLLLG--ILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLF 267 (378)
T ss_dssp HHTT-------THHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHH
T ss_pred HHCC----CceehHHHHHH--HHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhH
Confidence 2221 12333333333 23455666789999999999999999755442 3566677777778889999
Q ss_pred -HHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHHHHHHHH
Q 043324 305 -FGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKGHADLVV 373 (788)
Q Consensus 305 -Fv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG~~~li~ 373 (788)
|+..|..++-..+... .-.....+++..+++|.+|.+..++.. +++|+ +-..+|++-...=.+++-+
T Consensus 268 AlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~-~l~gv~~LaGIGFTmSLFI 345 (378)
T PF06965_consen 268 ALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWR-HLYGVGLLAGIGFTMSLFI 345 (378)
T ss_dssp HHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GG-GGTTHHHHTT--HHHHHHH
T ss_pred hheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999887665432 233345567778899999988775543 46778 8777888666667888888
Q ss_pred HhhcCcCCCC
Q 043324 374 VDASPNSEKW 383 (788)
Q Consensus 374 ~~~~~~~~il 383 (788)
++.+++....
T Consensus 346 a~LAF~~~~~ 355 (378)
T PF06965_consen 346 AGLAFDDPAL 355 (378)
T ss_dssp HHHHSTT-SS
T ss_pred HHHHcCChhh
Confidence 9999886443
No 28
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.85 E-value=1.2e-08 Score=95.52 Aligned_cols=131 Identities=15% Similarity=0.297 Sum_probs=95.1
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
|||+|+.+.++...+++.+..++.. .+.+++++|+++.+... ++ ... . ....+.++.+ +.+..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~-~~---~~~-~-------~~~~~~~~~~---~~~~~ 63 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHS-SP---SQL-E-------VNVQRARKLL---RQAER 63 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCC-Cc---chh-H-------HHHHHHHHHH---HHHHH
Confidence 6999999999999999999999865 34688999999876544 21 100 0 0001123333 44444
Q ss_pred hhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 515 FSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 515 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
.....++.+++....+ .+..++||+.|++.++|+|++|+|+++...+ ..+++..++|++++||+|.|.
T Consensus 64 ~~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~------~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 64 IAASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRD------RLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred HhhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccc------eecCchHHHHHhcCCCCEEEe
Confidence 4445567777777776 3688999999999999999999998765432 346677999999999998874
No 29
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.59 E-value=4.9e-08 Score=108.83 Aligned_cols=327 Identities=13% Similarity=0.176 Sum_probs=201.5
Q ss_pred HHHHHHHHhccC--CChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhh
Q 043324 31 SHLFHLIFKPLG--QPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNL 108 (788)
Q Consensus 31 ~~l~~~l~~~l~--~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~ 108 (788)
+.+..-+..+++ .|.-.-.|+.|+++|-.+.+.-... -++-++ ..+-..-+--++|-+|+-|.-+.+..+-
T Consensus 54 aKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~--~~~L~s-----~vFFlyLLPPIvlDAGYfMp~r~Ff~Nl 126 (670)
T KOG1966|consen 54 AKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA--PFFLES-----DVFFLYLLPPIVLDAGYFMPNRAFFENL 126 (670)
T ss_pred HHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc--cccccc-----cchhhhhcCHHHhcccccCccHHHHhcc
Confidence 333333344554 6888888999999997553321110 011111 1233344556889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHHH
Q 043324 109 HLVTTVAYGGFMACGIFGAAISWF--IIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSLI 186 (788)
Q Consensus 109 ~~~~~i~~~~~~ip~~l~~~~~~~--l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i 186 (788)
...+..+..|.+.-.+.-.+..|. ..+.++.+ ......++.|...|.-+|..+..+.+|... |.-+=-++.+++++
T Consensus 127 gtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLl 204 (670)
T KOG1966|consen 127 GTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLL 204 (670)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhh
Confidence 999999998887754332222221 22333222 234556888999999999999999999985 44454778999999
Q ss_pred HHHHHHHHHHHHHHHhhcC--chh-----HHHHH----HHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 043324 187 NEMSCSLLFSLVVAFTEDG--MFK-----TLLLS----IFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLLILVLLIS 255 (788)
Q Consensus 187 ~D~~~~ill~l~~~~~~~~--~~~-----~~~l~----~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~ 255 (788)
||.+.++++-+...+..-+ +.. ...+. .+.+++++.++..+....-|.+.. ++-..-++++.+...
T Consensus 205 NDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pYl 281 (670)
T KOG1966|consen 205 NDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPYL 281 (670)
T ss_pred cCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHHH
Confidence 9999999988887765432 110 11110 112233344444444444444332 344456678899999
Q ss_pred HHHHHHHhChhhHHHHHHHHhhccCCC-----chhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHH
Q 043324 256 VSMIIESSGLYSTVHCFLVGMMFPREG-----KTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMV 330 (788)
Q Consensus 256 ~~~~~e~~G~~~~lGaflaGL~l~~~~-----~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~ 330 (788)
++..+|.+++|++++-.++|+++...- +....-+..+.......--++-|++.|..+=- .-.. .+|.++.+-+
T Consensus 282 aYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~-~~h~-wd~~Fi~~T~ 359 (670)
T KOG1966|consen 282 AYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVS-SNHH-WDFAFICLTL 359 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcC-Ccce-eehhhhhhHH
Confidence 999999999999999999999998421 11111122233334455556778888876522 2222 2355555555
Q ss_pred HHHHHHHHHHHHHHHHHhC------CCchHHHHHHHHHHhhHHHHHHHH
Q 043324 331 SLSIAGKILGTLLACYYLK------IPLNIEAVILAFILNLKGHADLVV 373 (788)
Q Consensus 331 ~~~~~~K~~~~~l~~~~~~------~~~~~~a~~lglll~~kG~~~li~ 373 (788)
+...+.|.+++...+++.+ ++.. |-+.++. =.-||.+...+
T Consensus 360 ~fc~~~R~lgv~~lt~~~N~fr~~k~~~~-DQfimsy-GGLRGAiaF~L 406 (670)
T KOG1966|consen 360 VFCLIYRAIGVVVLTWFLNKFRMVKLEFV-DQFIMSY-GGLRGAIAFGL 406 (670)
T ss_pred HHHHHHHHHHhhhhhhhhhhhheeecccc-ceeeeec-CCcchhhheeE
Confidence 6666789999888777763 4555 6654443 24456555443
No 30
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.16 E-value=0.002 Score=71.59 Aligned_cols=294 Identities=18% Similarity=0.180 Sum_probs=154.6
Q ss_pred CCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHH
Q 043324 42 GQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMA 121 (788)
Q Consensus 42 ~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~i 121 (788)
.+|.++--++.|+++.. +|.+++ |.+ .+..+.+.+..+-+-+++.=++.|+++++|.++|.+ +++..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~-----p~~--s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l-~~F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDS-----PAS--SPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLL-LAFLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCC-----CCc--chHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHH-HHHHHHHH
Confidence 36777777788888876 455521 112 234455666666666777777899999999988854 44544456
Q ss_pred HHHHHHHHHHHHHHHh-hhccchhHH-HHHHHHHHhc-ccHHHHHHHHHhcCcCCCchhHHHHHHHHHHH-HHHHHHHHH
Q 043324 122 CGIFGAAISWFIIREL-TISYNKIAF-AIVTIIIIAN-SASPVVIRLAADLKLDTSDVGRLAMSSSLINE-MSCSLLFSL 197 (788)
Q Consensus 122 p~~l~~~~~~~l~~~~-~~~~~~~~~-~l~lg~~ls~-Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i~D-~~~~ill~l 197 (788)
..++|+.+++.+++.. .++ .|.. +.+.|.-.-- ..+..+... ++. + .-..+.++.-| ++.-+-+.+
T Consensus 94 g~viG~~va~~l~~~~l~~~--~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~--~~~~~a~~aaDnv~~~~~~~~ 163 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPE--GWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S--DSLFAAALAADNVVMALWFAF 163 (378)
T ss_pred HHHHHHHHHHHHHhhcccch--HHHHHHHHHhcccCchhHHHHHHHH---HCC---C--HHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776542 221 1211 1121111111 112223222 221 1 22344444444 444333333
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHH--------------Hhh--cccccccchhHHHHHHHHHHHHHHHHH
Q 043324 198 VVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWF--------------NTK--SRNQKFINNSQVLLILVLLISVSMIIE 261 (788)
Q Consensus 198 ~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l--------------~~~--~~~~~~~~e~~~~~il~~~l~~~~~~e 261 (788)
...+..-. +..-+|. .+. .++.++.. ..+...+.+.+..+.+++
T Consensus 164 l~~l~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~ 223 (378)
T PF05684_consen 164 LLALPPFA-------------------RKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSH 223 (378)
T ss_pred HHHHhhhh-------------------HHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHH
Confidence 33332200 0000000 000 00011111 223334444443333333
Q ss_pred HhCh-------------hhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHH
Q 043324 262 SSGL-------------YSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALV 328 (788)
Q Consensus 262 ~~G~-------------~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~ 328 (788)
.++- -.++-....|++.. .+|..+.+ +-.+.+..+++=+||+.+|++.|+..+.+ .. ..++
T Consensus 224 ~la~~l~~~~~~~~~~~~~il~~tt~~l~~~-~~~~~~~l--~g~~~lg~~lly~ffa~IGa~a~i~~l~~--ap-~~~l 297 (378)
T PF05684_consen 224 ALAAWLPPLFAGISSSTWLILTVTTLGLATS-FPPFRKLL--RGASELGTFLLYLFFAVIGASADISELLD--AP-SLFL 297 (378)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccchhhcC--CchHHHHHHHHHHHHHHHccccCHHHHHH--hH-HHHH
Confidence 2221 13344555666665 45555443 33344667888899999999999988765 22 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCC
Q 043324 329 MVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKW 383 (788)
Q Consensus 329 i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il 383 (788)
+.++.+..-.+..++.+|++|.|.. +.. ++..-|.-|.........+++..+.
T Consensus 298 ~~~i~l~iH~~l~l~~~kl~k~~l~-~~~-vAS~AnIGGpaTA~a~A~a~~~~Lv 350 (378)
T PF05684_consen 298 FGFIILAIHLLLMLILGKLFKIDLF-ELL-VASNANIGGPATAPAVAAAKGPSLV 350 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHH-HHH-HHhhcccCCcchHHHHHHhcCCccH
Confidence 4555567788888899999999987 554 4544566666666665666654444
No 31
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.03 E-value=0.001 Score=70.57 Aligned_cols=257 Identities=12% Similarity=0.107 Sum_probs=144.5
Q ss_pred HHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHH
Q 043324 88 RIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAA 167 (788)
Q Consensus 88 l~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 167 (788)
+..++|-.|-++|++...+.-||...+-+.-+.++.+++..++.++ +.+.......+.+-.+++.|.-..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~----g~~g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFF----GAEGIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CcccccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 3457899999999999888878877776777777777776666544 222112334455556666677666677778
Q ss_pred hcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 043324 168 DLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFNTKSRNQKFINNSQVL 247 (788)
Q Consensus 168 el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~ 247 (788)
|++ -++|.|-. +...++|.=-+.++++. ..++.+ .| . .
T Consensus 127 ~yG-~~~d~gA~--~~~sl~~GPf~tm~aLg-----------------------------a~gLA~-ip-------~-~- 164 (312)
T PRK12460 127 EFG-DERDVGAI--SILSLNDGPFFTMLALG-----------------------------AAGLAN-IP-------I-M- 164 (312)
T ss_pred HcC-CHhhhhHH--hhhhhccCcHHHHHHHH-----------------------------HHHHhc-CC-------h-H-
Confidence 887 34444422 22222222111111110 001111 11 0 0
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHH
Q 043324 248 LILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVAL 327 (788)
Q Consensus 248 ~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~ 327 (788)
.+ -+.+=|++.|+++.|-.+ .+.+.++ +...+.+|+|-+..|.++|+..+.+. .+. .+
T Consensus 165 -~l---------------v~lilpILiGmilGNld~---~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~-G~~-GI 222 (312)
T PRK12460 165 -AL---------------VAALLPLVLGMILGNLDP---DMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQA-GLA-GI 222 (312)
T ss_pred -HH---------------HHHHHHHHHHHHHhccch---hhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHh-ChH-HH
Confidence 00 013335677778876332 2223333 35556999999999999999888652 222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH--HHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHH
Q 043324 328 VMVSLSIAGKILGTLLACYYLKIPLNIEAVILA--FILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGP 405 (788)
Q Consensus 328 ~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lg--lll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~ 405 (788)
++.++.++.-....++..|++|.+.+ -+..+| ..-+.-|-..++-.. -..+-. -+..-..+-.++++|.+++|.
T Consensus 223 lL~v~vv~~t~~~~~~i~rllg~~~~-~g~li~stAGnAIcgpAAVaAad--P~~~~~-~~~Ataqvaa~vivTail~P~ 298 (312)
T PRK12460 223 LLGVLVTIVTGFFNIFADRLVGGTGI-AGAAASSTAGNAVATPLAIAAAD--PSLAPV-AAAATAQVAASVIVTAILTPL 298 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHHHhhHHHHHHHHHHHhc--hhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445556666688898988 777777 444444433332222 222222 333333445567788888999
Q ss_pred HHHHHhchhhh
Q 043324 406 VVSFIMRKQEV 416 (788)
Q Consensus 406 lv~~l~~~~~~ 416 (788)
++.|++||.++
T Consensus 299 ~t~~~~k~~~~ 309 (312)
T PRK12460 299 LTSWVAKKEAK 309 (312)
T ss_pred HHHHHHHHhcc
Confidence 99999887553
No 32
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.80 E-value=7.2e-05 Score=69.36 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=81.0
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
||++|+.+.+....+++.+..+.... ...++.+|+.+-... .. . .+.++.+ +.+.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~-------~~-----------~-~~~~~~l---~~~~~ 56 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL--KAPWYVVYVETPRLN-------RL-----------S-EAERRRL---AEALR 56 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh--CCCEEEEEEecCccc-------cC-----------C-HHHHHHH---HHHHH
Confidence 68999999988888999888887653 357799998753211 00 0 0112333 33333
Q ss_pred hhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccC-CCceEE
Q 043324 515 FSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHA-PCSVGI 589 (788)
Q Consensus 515 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~a-pCsVgI 589 (788)
..+..++. ..+..+ .+..+.|++.|++.++|+|++|+|++..... ..++++.++|+++| ||+|-|
T Consensus 57 ~~~~~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~------~~~Gs~~~~v~~~a~~~~v~v 122 (124)
T cd01987 57 LAEELGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRE------LFRGSLVDRLLRRAGNIDVHI 122 (124)
T ss_pred HHHHcCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHH------HhcccHHHHHHHhCCCCeEEE
Confidence 33333333 223333 4678999999999999999999998755432 23566789999999 999755
No 33
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=97.76 E-value=8.6e-05 Score=70.97 Aligned_cols=143 Identities=13% Similarity=0.213 Sum_probs=82.6
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
.||+++.+.++....++.+-.+.... ...++++|+++..... ...... .........+.....++.+ +.+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~--~~~l~ll~v~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l---~~~~~ 72 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK--GQTIVLVHVHPPITSI--PSSSGK-LEVASAYKQEEDKEAKELL---LPYRC 72 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC--CCcEEEEEeccCcccC--CCCccc-hHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 48899999888888888888776543 3578999998653221 000000 0000000000000011222 11111
Q ss_pred hhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhH-HHHHHhhccCC--CceEEEe
Q 043324 515 FSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMR-STNQKIIRHAP--CSVGILV 591 (788)
Q Consensus 515 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r-~~n~~vl~~ap--CsVgIlV 591 (788)
.....++.++...... .+.++.|++.|++.++|+|+||=|++......+ ++ .+-++|+++|| |+|-| |
T Consensus 73 ~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vlv-v 143 (146)
T cd01989 73 FCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVYV-V 143 (146)
T ss_pred HHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEEE-E
Confidence 1123456666555443 367899999999999999999998875433222 23 46889999999 99855 4
Q ss_pred cCC
Q 043324 592 DRG 594 (788)
Q Consensus 592 dRg 594 (788)
.+|
T Consensus 144 ~~~ 146 (146)
T cd01989 144 SKG 146 (146)
T ss_pred eCc
Confidence 443
No 34
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.71 E-value=0.0025 Score=67.23 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=139.2
Q ss_pred HHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHhcccHHHH
Q 043324 88 RIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISY-----NKIAFAIVTIIIIANSASPVV 162 (788)
Q Consensus 88 l~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~-----~~~~~~l~lg~~ls~Ts~~vv 162 (788)
+..++|-.|-++|++...+.-||...+-+.-+.+..+++.+++.++ + .+. ......+.+-.+++.+....=
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~f-g---~~Gi~~g~f~GlS~LAiiaa~~~~NggLY 126 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFF-G---PEGIQSGFFLGLSALAIIAAMTNSNGGLY 126 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHc-C---ccccccccccchHHHHHHHHHhcCCHHHH
Confidence 4468899999999999999888888887777777777777666544 2 221 022345666667777777777
Q ss_pred HHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 043324 163 IRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFNTKSRNQKFIN 242 (788)
Q Consensus 163 ~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~ 242 (788)
..+..|++- ++|.| +.+..-++|.=.+.++++-. ... .
T Consensus 127 ~aL~~~yGd-~~D~g--A~~i~sl~~GPf~tMl~LG~------------------------------------sG~---a 164 (314)
T PF03812_consen 127 LALMGQYGD-EEDVG--AFSILSLNDGPFFTMLALGA------------------------------------SGL---A 164 (314)
T ss_pred HHHHHHhCC-HHHhH--HHHHHHhhhhHHHHHHHHhh------------------------------------ccc---c
Confidence 777788772 34443 22222222221111111100 000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhH
Q 043324 243 NSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDN 322 (788)
Q Consensus 243 e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~ 322 (788)
+.... . +=..+=+++.|+++.|-.+ + ..|+-.+....++|+|-...|..+|+..+.....
T Consensus 165 ~ip~~-~---------------lv~~llP~iiG~iLGNLD~---~-~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl 224 (314)
T PF03812_consen 165 NIPWM-S---------------LVAALLPIIIGMILGNLDP---D-FRKFLAPGVPILIPFFGFALGAGINLSNIIKAGL 224 (314)
T ss_pred CCCHH-H---------------HHHHHHHHHHHHHHhcCCH---H-HHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCc
Confidence 00000 0 0123447889999986443 3 2344456778999999999999999988754222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHH
Q 043324 323 VIVALVMVSLSIAGKILGTLLACYYL-KIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTL 401 (788)
Q Consensus 323 ~~~~~~i~~~~~~~K~~~~~l~~~~~-~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~ 401 (788)
...++.++ .++.-....++.-++. |-+-. -+...+-.-..--....+++..--+..-. .+..-..+..++++|.+
T Consensus 225 ~GIlLgv~--~~~vtg~~~~~~dr~i~~~~g~-aG~A~sstAGnavatPaaiA~~dP~~~~~-~~~ATaQvAaavIvTai 300 (314)
T PF03812_consen 225 SGILLGVI--VVVVTGIPLYLADRLILKGNGV-AGAAISSTAGNAVATPAAIAAADPSFAPY-AASATAQVAAAVIVTAI 300 (314)
T ss_pred chHHHHHH--HHHHHhHHHHHHHHHHcCCCCc-eeehHHhhhhhhhhhhHHHHHhChhhHhh-HHHHHHHHHHHHHHHHH
Confidence 22222221 1222223345555553 33323 22222221111111222333333233333 33344556677788889
Q ss_pred hHHHHHHHHhchh
Q 043324 402 MAGPVVSFIMRKQ 414 (788)
Q Consensus 402 i~~~lv~~l~~~~ 414 (788)
++|.++.|++||-
T Consensus 301 l~P~lt~~~~kr~ 313 (314)
T PF03812_consen 301 LTPILTSWWAKRF 313 (314)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 35
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.61 E-value=0.00029 Score=65.54 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=77.9
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHHH
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDVY 687 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~ 687 (788)
+||++++-|.++.+.|+++|.++|++.+.+++++|+.+........ .... .+.+...++..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~-------------~~~~------~~~~~~~~~~~ 63 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFS-------------AAED------EESEEEAEEEE 63 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHH-------------HHHH------HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccc-------------cccc------cccccccchhh
Confidence 5899999999999999999999999999999999999732111000 0000 00000000000
Q ss_pred HHHH---HHhccCCCceEEEEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcC
Q 043324 688 MDEF---YKRYVSSGQIGYVEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASM 763 (788)
Q Consensus 688 ~~~~---~~~~~~~~~v~y~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 763 (788)
..+- ...........+......+..+ +....++ .++||+|+|+++... +.+| -+|-+.+-++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~~~------~~~~----~~gs~~~~l~~~ 131 (140)
T PF00582_consen 64 QARQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEE--HNADLIVMGSRGRSG------LERL----LFGSVAEKLLRH 131 (140)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH--TTCSEEEEESSSTTS------TTTS----SSHHHHHHHHHH
T ss_pred hhhhHHHHHHhhhccceeEEEEEeeccchhhhhcccc--ccceeEEEeccCCCC------ccCC----CcCCHHHHHHHc
Confidence 0000 0001112344455555566543 4444443 579999999987321 2222 277777777765
Q ss_pred CCCCceeEEEE
Q 043324 764 DFDIKSSVLVI 774 (788)
Q Consensus 764 d~~~~~SvLVv 774 (788)
+..+||||
T Consensus 132 ---~~~pVlvv 139 (140)
T PF00582_consen 132 ---APCPVLVV 139 (140)
T ss_dssp ---TSSEEEEE
T ss_pred ---CCCCEEEe
Confidence 56689887
No 36
>PRK15456 universal stress protein UspG; Provisional
Probab=97.60 E-value=0.00018 Score=68.53 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=77.8
Q ss_pred EEEEEEeCCC--CchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHH
Q 043324 435 RMICCVYKPR--NASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAV 512 (788)
Q Consensus 435 riLvcv~~~~--~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af 512 (788)
|||+++.+.+ +....+..+..++.. . -.++++|+++..... . ......+.+ +......+... +.+
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~---~~~~~~~~~---~~~~~~~~~~~---~~l 70 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-S---LHRFAADVR---RFEEHLQHEAE---ERL 70 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-c---ccccccchh---hHHHHHHHHHH---HHH
Confidence 6999988763 556667767666543 2 378999998654221 0 000000000 00000001111 222
Q ss_pred Hhhh---cCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEE
Q 043324 513 DIFS---SETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGI 589 (788)
Q Consensus 513 ~~~~---~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgI 589 (788)
+.+. ...++.++...... +..++|++.|++.++|+|+||-|++. ..+ ..++++-++|++++||+|-|
T Consensus 71 ~~~~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~------~llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 71 QTMVSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-IST------HLLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHHHHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccc------eecCccHHHHHHcCCCCEEE
Confidence 2222 12345666555544 67899999999999999999999753 322 23566689999999999765
No 37
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.60 E-value=7.2e-05 Score=69.68 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=82.2
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHH-
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD- 513 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~- 513 (788)
|||+|+.+.++...+++.+..+... ....++++|+++............. . .....+... ...+
T Consensus 4 ~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~-----~-----~~~~~~~~~---~~~~~ 68 (140)
T PF00582_consen 4 RILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDE-----E-----SEEEAEEEE---QARQA 68 (140)
T ss_dssp EEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHH-----H-----HHHHHHHHH---HHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeecccccccccccccc-----c-----cccccchhh---hhhhH
Confidence 8999998888878887777776643 3357899999988755521100000 0 000000000 0000
Q ss_pred --hhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 514 --IFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 514 --~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
......+.........+ .+..+.|++.+++.++|+|++|.|++....+ ..++++.+++++++||+|-|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~------~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 69 EAEEAEAEGGIVIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLER------LLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHTTSEEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTT------SSSHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHhhhccceeEEEEEe--eccchhhhhccccccceeEEEeccCCCCccC------CCcCCHHHHHHHcCCCCEEEe
Confidence 11111122223333334 4789999999999999999999998544433 237788999999999998764
No 38
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=97.52 E-value=0.0015 Score=60.86 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=75.4
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHHHH
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDVYM 688 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~ 688 (788)
||+++.-|.++.+.++++|.+||+.++.+++++|+.+.++.. .. . .. +.+.+..++.+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~-~~-------~-----~~---------~~~~~~~~~~~ 58 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHS-SP-------S-----QL---------EVNVQRARKLL 58 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCC-Cc-------c-----hh---------HHHHHHHHHHH
Confidence 588999999999999999999999999999999998732111 00 0 00 00112223444
Q ss_pred HHHHHhccC-CCceEEEEEecCCh-HHHHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcCCCC
Q 043324 689 DEFYKRYVS-SGQIGYVEKNLRDG-AETLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASMDFD 766 (788)
Q Consensus 689 ~~~~~~~~~-~~~v~y~E~~v~~~-~~~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~ 766 (788)
+.+...... +-.+.+....-.+. .++.+..+ +.+.||+|+|++++.. | ...-+|-.-+-+...
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~--~~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~--- 123 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAK--ERQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES--- 123 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHH--hcCCCEEEEecCCCCC---------c-cceecCchHHHHHhc---
Confidence 444333221 11233222221232 23333333 2469999999986532 1 223467666666644
Q ss_pred CceeEEEEe
Q 043324 767 IKSSVLVIQ 775 (788)
Q Consensus 767 ~~~SvLVvQ 775 (788)
++.+||||+
T Consensus 124 ~~~pvlvv~ 132 (132)
T cd01988 124 APCDVAVVK 132 (132)
T ss_pred CCCCEEEeC
Confidence 667999884
No 39
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.48 E-value=0.015 Score=63.16 Aligned_cols=157 Identities=12% Similarity=0.203 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhhcc-cccccch----------------------h--H-HHHHHHHHHHHHHHHHHhC-----hh
Q 043324 218 ASLILVNCYLVIWFNTKSR-NQKFINN----------------------S--Q-VLLILVLLISVSMIIESSG-----LY 266 (788)
Q Consensus 218 ~~~~~v~r~~~~~l~~~~~-~~~~~~e----------------------~--~-~~~il~~~l~~~~~~e~~G-----~~ 266 (788)
+...+++.|+.+|+++|+. +.++.++ . . +.++...+.+..++.+.++ ++
T Consensus 170 v~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP 249 (404)
T COG0786 170 VAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALP 249 (404)
T ss_pred HHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3456677899999987651 1111111 0 1 2222333333445666665 46
Q ss_pred hHHHHHHHHhhccCCCch--hHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 267 STVHCFLVGMMFPREGKT--TRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLA 344 (788)
Q Consensus 267 ~~lGaflaGL~l~~~~~~--~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~ 344 (788)
...++++.|+++.+--+. ..++.++..+.+.++-+.+|.+..=|++.+..+.+. ..+.++++.+-..+.-+.+.+..
T Consensus 250 ~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l-~lpl~viL~vQ~i~m~lfa~fvt 328 (404)
T COG0786 250 LFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL-ALPLLVILAVQTIVMALFAIFVT 328 (404)
T ss_pred HHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999853221 112344555567788888998888888888777652 23333334444445566677778
Q ss_pred HHHhCCCchHHHHHHHHHHhh-HHHHHHHHHhh
Q 043324 345 CYYLKIPLNIEAVILAFILNL-KGHADLVVVDA 376 (788)
Q Consensus 345 ~~~~~~~~~~~a~~lglll~~-kG~~~li~~~~ 376 (788)
.|.+|-++. .+...+.-+.. -|...-++++.
T Consensus 329 fr~mG~~Yd-AaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 329 FRLMGKNYD-AAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHhCcchh-HHHHhcccccCccCCcHHHHHhh
Confidence 889998887 66553433322 24445555554
No 40
>PRK15005 universal stress protein F; Provisional
Probab=97.45 E-value=0.00045 Score=65.77 Aligned_cols=135 Identities=10% Similarity=0.054 Sum_probs=74.7
Q ss_pred EEEEEEeCCCC--chhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHH
Q 043324 435 RMICCVYKPRN--ASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAV 512 (788)
Q Consensus 435 riLvcv~~~~~--~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af 512 (788)
|||+++.+.++ ....++.+..+.... .-.++.+|+++........ -... ..... ... ...+... +.+
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~~--~~~l~ll~v~~~~~~~~~~-~~~~--~~~~~--~~~-~~~~~~~---~~l 72 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKID--DAEVHFLTVIPSLPYYASL-GLAY--SAELP--AMD-DLKAEAK---SQL 72 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhcc--CCeEEEEEEEccCcccccc-cccc--cccch--HHH-HHHHHHH---HHH
Confidence 68999888776 245566555555432 3478999999753221000 0000 00000 000 0001111 222
Q ss_pred Hhhh---cCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEE
Q 043324 513 DIFS---SETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGI 589 (788)
Q Consensus 513 ~~~~---~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgI 589 (788)
+++. ...++.++....- .+-.+.|++.|++.++|+|++|-|+ ....+ ..++++-.+|++++||+|-|
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~------~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 73 EEIIKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDITT------YLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCchh------eeecchHHHHHHhCCCCEEE
Confidence 2222 1233445544443 3568999999999999999999773 22222 23566689999999999765
Q ss_pred E
Q 043324 590 L 590 (788)
Q Consensus 590 l 590 (788)
.
T Consensus 143 V 143 (144)
T PRK15005 143 V 143 (144)
T ss_pred e
Confidence 3
No 41
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.39 E-value=0.3 Score=52.96 Aligned_cols=331 Identities=15% Similarity=0.137 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCh--hHH-HHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhh
Q 043324 21 CLQVCGILVVSHLFHLIFKPLGQPG--PVA-QVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGL 97 (788)
Q Consensus 21 ll~i~lil~~~~l~~~l~~~l~~P~--ii~-~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gl 97 (788)
..|..+.+.++.+.++++..+++|. ..| -+++|++.+-... ++.-| . .+-..+...+=-.+|.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~-------~l~~P----~---~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGL-------TLPLP----R---GLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc-------cccCC----h---HHHHHHHHHHHHHHhh
Confidence 5667778888889999999998864 344 4455555542111 11111 1 1233444445578899
Q ss_pred ccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchh
Q 043324 98 EFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVG 177 (788)
Q Consensus 98 e~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G 177 (788)
.+.++.+... ++.+.+.+...+++...+...+|++.++ .. .+...+ ++|. ++-.......+-+|+|- |.+.
T Consensus 74 ~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~-~~--~~~~Ta-~~gs--~PGgas~m~~iA~d~gA-d~~~- 144 (352)
T COG3180 74 SLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRF-SI--LPGNTA-FLGS--SPGGASAMVSIAQDYGA-DLRL- 144 (352)
T ss_pred hcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHh-cC--CCcchh-hHhc--CCchHHHHHHHHHHhCC-ChhH-
Confidence 9999887654 3335555555666777777777776554 21 121222 2221 11111222233355552 2211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------ccchhHHHHHHH
Q 043324 178 RLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFNTKSRNQK------FINNSQVLLILV 251 (788)
Q Consensus 178 ~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~~~~~~~~------~~~e~~~~~il~ 251 (788)
.+ +.+ ..-.+.+...+-++.+.... .++..+.+ +.....+.+.+.
T Consensus 145 -VA--------------------l~Q------~lRvl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~~ 195 (352)
T COG3180 145 -VA--------------------LMQ------YLRVLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLIL 195 (352)
T ss_pred -HH--------------------HHH------HHHHHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHHH
Confidence 10 100 00001111111222222111 11111111 111112445555
Q ss_pred HHHHHHHHHHHhChh--hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchh-HHHHHHH
Q 043324 252 LLISVSMIIESSGLY--STVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTID-NVIVALV 328 (788)
Q Consensus 252 ~~l~~~~~~e~~G~~--~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~-~~~~~~~ 328 (788)
..++.+.+...+++. ..+|+++.|..+.-......++-+ ....+-.-+.-..+|.++|-..+.... .....++
T Consensus 196 ~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~----wl~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v 271 (352)
T COG3180 196 AALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPA----WLLAVAQALIGALIGSRFDRSILREAKRLLPAILV 271 (352)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCH----HHHHHHHHHHHHHHcccccHHHHHHhHhhcchHHH
Confidence 666666777777764 568888888888743311111111 111222234456788888866554321 2222344
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 043324 329 MVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVS 408 (788)
Q Consensus 329 i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~ 408 (788)
.++..++.-....++..++.+.++. ++. +..+|.|.-++.....+.+.. .+.+-+.=++=.++-..+.|++.|
T Consensus 272 ~ii~l~~~~~~~a~ll~~~~~i~~~-ta~---La~sPGGl~~ma~~A~~l~ad---~a~V~a~q~lRll~il~i~p~l~r 344 (352)
T COG3180 272 SIIALMAIAAGMAGLLSWLTGIDLN-TAY---LATSPGGLDTMAAIAAALGAD---PAFVMALQVLRLLFILLLGPALAR 344 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHH-HHH---HHcCCCcHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666667777888898888 665 346788988887777666532 122222222223333444588887
Q ss_pred HHhchh
Q 043324 409 FIMRKQ 414 (788)
Q Consensus 409 ~l~~~~ 414 (788)
++.++.
T Consensus 345 ~l~~~~ 350 (352)
T COG3180 345 FLSKRA 350 (352)
T ss_pred HHHHHc
Confidence 776543
No 42
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.31 E-value=0.00067 Score=62.29 Aligned_cols=129 Identities=21% Similarity=0.295 Sum_probs=82.4
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
||++|+.+..+...+++.+..+.... ...++++|+.+-.+.. .. + ..+ ....+.++.+ +.+..
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~-~~----~-~~~------~~~~~~~~~l---~~~~~ 63 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSS-AA----E-LAE------LLEEEARALL---EALRE 63 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCc-ch----h-HHH------HHHHHHHHHH---HHHHH
Confidence 58999998888888999888887654 4677899997654433 10 0 000 0000112222 22222
Q ss_pred hhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEE
Q 043324 515 FSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGI 589 (788)
Q Consensus 515 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgI 589 (788)
.....+++++......+ ..++|++.+++.++|++++|++++....+ ..+++.-+++++++||+|-+
T Consensus 64 ~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~dlvvig~~~~~~~~~------~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 64 ALAEAGVKVETVVLEGD---PAEAILEAAEELGADLIVMGSRGRSGLRR------LLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred HHhcCCCceEEEEecCC---CHHHHHHHHHHcCCCEEEEcCCCCCccce------eeeccHHHHHHhCCCCCEEe
Confidence 22245666665554442 37999999999999999999987644322 12455578999999999754
No 43
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=97.25 E-value=0.0024 Score=60.89 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=79.0
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHHHH
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDVYM 688 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~ 688 (788)
+|++++=|.+..+.|+++|.++++.++.+++++|+++..+..... . ...+...... ++.++.-++.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~-------~----~~~~~~~~~~--~~~~~~~~~~l 67 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSS-------S----GKLEVASAYK--QEEDKEAKELL 67 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCC-------c----cchHHHHHHH--HHHHHHHHHHH
Confidence 378889999999999999999999999999999998632111000 0 0000000000 01112234455
Q ss_pred HHHHHhccCCCceEEEEEecC--ChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccc-hhhhhhhcCC
Q 043324 689 DEFYKRYVSSGQIGYVEKNLR--DGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELG-VVGDLLASMD 764 (788)
Q Consensus 689 ~~~~~~~~~~~~v~y~E~~v~--~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG-~iGd~las~d 764 (788)
+++...... ..+.+...++. +..+ +++..++ .+.||+|+|++++. |+..+ -+| -+-+.+.-.
T Consensus 68 ~~~~~~~~~-~~~~~~~~~~~g~~~~~~I~~~a~~--~~~dlIV~Gs~g~~------~l~~~----~~gssva~~Vi~~- 133 (146)
T cd01989 68 LPYRCFCSR-KGVQCEDVVLEDDDVAKAIVEYVAD--HGITKLVMGASSDN------HFSMK----FKKSDVASSVLKE- 133 (146)
T ss_pred HHHHHHHhh-cCCeEEEEEEeCCcHHHHHHHHHHH--cCCCEEEEeccCCC------ceeec----ccCCchhHHHHhc-
Confidence 555544321 23555555544 3333 2222222 35799999998642 12211 244 577777755
Q ss_pred CCCc--eeEEEEee
Q 043324 765 FDIK--SSVLVIQQ 776 (788)
Q Consensus 765 ~~~~--~SvLVvQq 776 (788)
.+ .+|||||.
T Consensus 134 --a~~~c~Vlvv~~ 145 (146)
T cd01989 134 --APDFCTVYVVSK 145 (146)
T ss_pred --CCCCceEEEEeC
Confidence 44 79999984
No 44
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.19 E-value=0.0012 Score=62.85 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=74.7
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
|||+++.+.++....+..+..+....+ -.++++|+.+-.... ......... .+......++.. +.++.
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~---~~l~~ 72 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARPYN--AKVSLIHVDVNYSDL------YTGLIDVNL-GDMQKRISEETH---HALTE 72 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHhhC--CEEEEEEEccChhhh------hhhhhhcch-HHHHHHHHHHHH---HHHHH
Confidence 799998888777777776666654322 467889984211000 000000000 000000011111 33344
Q ss_pred hhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 515 FSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 515 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
+.+..++.+....... .+.++.||+.|++.++|+|++|=|+. . . ..+.++-.+|+++|||+|-|.
T Consensus 73 ~~~~~~~~~~~~~~~~--G~p~~~I~~~a~~~~~DLIV~Gs~~~--~---~----~~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 73 LSTNAGYPITETLSGS--GDLGQVLVDAIKKYDMDLVVCGHHQD--F---W----SKLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHhCCCCceEEEEEe--cCHHHHHHHHHHHhCCCEEEEeCccc--H---H----HHHHHHHHHHHhhCCCCEEEe
Confidence 4333344432222222 45689999999999999999998842 1 1 124578899999999997654
No 45
>PRK11175 universal stress protein UspE; Provisional
Probab=97.12 E-value=0.0012 Score=71.40 Aligned_cols=144 Identities=14% Similarity=0.087 Sum_probs=80.2
Q ss_pred eEEEEEEeCCCCc-------hhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCccc
Q 043324 434 LRMICCVYKPRNA-------SGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVM 506 (788)
Q Consensus 434 lriLvcv~~~~~~-------~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 506 (788)
-||++++...+.. ..+++.+..+.... ....++++|+.+....... ........ ........++..
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~ 225 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIA-----IELPEFDP-SVYNDAIRGQHL 225 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhcc-----ccccccch-hhHHHHHHHHHH
Confidence 4799988765432 24566666655332 0246789998865432200 00000000 000000001111
Q ss_pred chhHHHHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCc
Q 043324 507 EINEAVDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCS 586 (788)
Q Consensus 507 ~~~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCs 586 (788)
+.++.+.+..+++........ .+..+.|++.|+++++|+|+||.|++....+. .+++..++|++++||+
T Consensus 226 ---~~l~~~~~~~~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~------llGS~a~~v~~~~~~p 294 (305)
T PRK11175 226 ---LAMKALRQKFGIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAA------FLGNTAEHVIDHLNCD 294 (305)
T ss_pred ---HHHHHHHHHhCCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcce------eecchHHHHHhcCCCC
Confidence 233344333344332222222 35688999999999999999999987655433 3566789999999999
Q ss_pred eEEEecCCC
Q 043324 587 VGILVDRGC 595 (788)
Q Consensus 587 VgIlVdRg~ 595 (788)
|-+.-.+|+
T Consensus 295 VLvv~~~~~ 303 (305)
T PRK11175 295 LLAIKPDGY 303 (305)
T ss_pred EEEEcCCCC
Confidence 877655554
No 46
>PRK09982 universal stress protein UspD; Provisional
Probab=97.11 E-value=0.0016 Score=62.04 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=74.7
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
+||+++.+.++....+.-+..++.. ..-+++++|+++......+. . ..... + +......+... +.++.
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~-~-~~~~~--~---~~~~~~~~~~~---~~l~~ 72 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPG-I-YFPAT--E---DILQLLKNKSD---NKLYK 72 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchh-h-hccch--H---HHHHHHHHHHH---HHHHH
Confidence 6999998888877777777666643 34578999998653211000 0 00000 0 00000001110 12222
Q ss_pred hhc-CCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 515 FSS-ETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 515 ~~~-~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
... .....++..... .+.++.||+.|++.++|+|+||-| +.... ..+. +-++|+++|+|+|-|.
T Consensus 73 ~~~~~~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 73 LTKNIQWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred HHHhcCCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHHH-HHHHHHhcCCCCEEEe
Confidence 221 112234433333 367999999999999999999954 32211 2233 7899999999997654
No 47
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.08 E-value=0.31 Score=54.22 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHhhccCCCch--hHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHH-HHHHHHHHHHHH
Q 043324 265 LYSTVHCFLVGMMFPREGKT--TRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVM-VSLSIAGKILGT 341 (788)
Q Consensus 265 ~~~~lGaflaGL~l~~~~~~--~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i-~~~~~~~K~~~~ 341 (788)
++...++++.|+++.+-.+. ..++-.+..+.+.++.+-+|.+..=|.+++..+.+ .+...+++ ++-.++.=+...
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~--~a~Plliil~~q~i~~~~f~~ 324 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLAD--YALPLLIILAVQTILMVLFAY 324 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999853211 01122333334556666677777778888888876 23333333 333333444555
Q ss_pred HHHHHHhCCCch
Q 043324 342 LLACYYLKIPLN 353 (788)
Q Consensus 342 ~l~~~~~~~~~~ 353 (788)
++..|.+|-++.
T Consensus 325 fv~fr~~gkdyd 336 (368)
T PF03616_consen 325 FVTFRVMGKDYD 336 (368)
T ss_pred HHhhhhhCCChh
Confidence 666778887755
No 48
>PRK15005 universal stress protein F; Provisional
Probab=97.02 E-value=0.0083 Score=56.95 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=34.3
Q ss_pred cEEEEEccCCccH--HHHHHHHHHHhhCCceEEEEEEccc
Q 043324 608 QSVATLFFGGPDD--REAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 608 ~~i~v~f~GG~DD--reAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
++|+++.=|.+.+ +.|+++|.++|+..+.+++++|+++
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~ 42 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIP 42 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEc
Confidence 5799998888874 7899999999999999999999986
No 49
>PRK10116 universal stress protein UspC; Provisional
Probab=96.93 E-value=0.0029 Score=60.02 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=35.6
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
++|+++.=+.++...||++|.++|+..+++++++++++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~ 41 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLAS 41 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEcc
Confidence 68999999999999999999999999999999999986
No 50
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.80 E-value=1.3 Score=49.70 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=59.5
Q ss_pred ChhhHHHHHHHHhhccCCCchh--HHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHH-HH
Q 043324 264 GLYSTVHCFLVGMMFPREGKTT--RTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKI-LG 340 (788)
Q Consensus 264 G~~~~lGaflaGL~l~~~~~~~--~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~-~~ 340 (788)
.++...+|++.|+++.+--+.. .++.++..+.+.++.+-+|.+..=|.+++..+.+ .+...+++++..++.-. ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999998532211 1233445556777888888888889999988876 45555555555444444 44
Q ss_pred HHHHHHHhCCCchHHHHHH
Q 043324 341 TLLACYYLKIPLNIEAVIL 359 (788)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~l 359 (788)
.++.-+.+|-+ . |+..+
T Consensus 322 ~fv~fr~mg~~-y-daaV~ 338 (398)
T TIGR00210 322 IFVTFRLMGKD-Y-DAAVL 338 (398)
T ss_pred HHHhHHhccch-H-HHHHH
Confidence 45666677766 5 66553
No 51
>PRK10116 universal stress protein UspC; Provisional
Probab=96.75 E-value=0.0045 Score=58.66 Aligned_cols=133 Identities=10% Similarity=0.107 Sum_probs=77.0
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
|||+++.+.++....+..+..++...+ ..++++|.++..... . .-.....+ +......++.. +.++.
T Consensus 5 ~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~--~---~~~~~~~~---~~~~~~~~~~~---~~l~~ 71 (142)
T PRK10116 5 NILVAVAVTPESQQLLAKAVSIARPVN--GKISLITLASDPEMY--N---QFAAPMLE---DLRSVMQEETQ---SFLDK 71 (142)
T ss_pred eEEEEccCCcchHHHHHHHHHHHHHhC--CEEEEEEEccCcccc--h---hhhHHHHH---HHHHHHHHHHH---HHHHH
Confidence 789988887777777777777764333 467888887653111 0 00000000 00000011111 33444
Q ss_pred hhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 515 FSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 515 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
+....++....... ...+..+.|++.|++.++|+|++|=|++..... +..+-.+|++++||+|-|+
T Consensus 72 ~~~~~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 72 LIQDADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred HHHhcCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEE
Confidence 43334444322222 345778999999999999999999886643221 1245679999999998765
No 52
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=96.75 E-value=0.0049 Score=58.65 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=35.3
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
+||+++.=|.+..+.||++|..+|+..+++++++|+..
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~ 41 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDV 41 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEcc
Confidence 68999999999999999999999999999999999943
No 53
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.71 E-value=0.048 Score=57.46 Aligned_cols=257 Identities=11% Similarity=0.079 Sum_probs=131.4
Q ss_pred HHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHHhcccHHHH
Q 043324 88 RIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISY-----NKIAFAIVTIIIIANSASPVV 162 (788)
Q Consensus 88 l~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~-----~~~~~~l~lg~~ls~Ts~~vv 162 (788)
+..++|-.|-++|++...+.-||...+-+.-+.++.+++.+++.++ + .+. ......+.+-.+++.|.-..=
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~-g---~~Gi~~g~~~GlS~LAiiaA~~nsNggLY 126 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRII-P---EDGVEVGFFAGLSTLALVAAMDMTNGGLY 126 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHc-C---cCCccccceeccHHHHHHHHHhCCcHHHH
Confidence 3457899999999998877777776666666777777776666544 2 221 112334555555666665566
Q ss_pred HHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 043324 163 IRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFNTKSRNQKFIN 242 (788)
Q Consensus 163 ~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~~~~~~~~~~~ 242 (788)
..+..|++ -++|.|-. +...++|.=-+.++++- . . + ..
T Consensus 127 ~aL~~qyG-d~~D~gA~--~i~sl~~GPf~TMi~LG--------------------~----------------s-G--lA 164 (314)
T TIGR00793 127 ASIMQQYG-TKEEAGAF--VLMSLESGPLMTMVILG--------------------T----------------A-G--IA 164 (314)
T ss_pred HHHHHHcC-CHhhhhhh--hhhhhccCcHHHHHHHh--------------------h----------------c-c--CC
Confidence 66667776 23444421 11112221111111000 0 0 0 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhH
Q 043324 243 NSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDN 322 (788)
Q Consensus 243 e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~ 322 (788)
+..... +=..+=+++.|+++.|-.+ ++. ++-......++|+|-...|..+|+..+.+...
T Consensus 165 ~ip~~~----------------lv~~ilPlliG~ilGNLD~---~~r-~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl 224 (314)
T TIGR00793 165 SFEPHV----------------FVGAVLPFLVGFALGNLDP---ELR-DFFSKAVQTLIPFFAFALGNTIDLGVIIQTGL 224 (314)
T ss_pred CCCHHH----------------HHHHHHHHHHHHHHhcCCH---HHH-HHhccCCCeeeehhhhhhcCCCCHHHHHHhCc
Confidence 000000 0123457889999987543 322 33335667899999999999999987744211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHH
Q 043324 323 VIVALVMVSLSIAGKILGTLLACYYLK-IPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTL 401 (788)
Q Consensus 323 ~~~~~~i~~~~~~~K~~~~~l~~~~~~-~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~ 401 (788)
...++.+. ..+.--...++.-|+.+ -+.. -+...|-.-..--....+++..--+..-. -+..-..+-.++++|.+
T Consensus 225 ~GIlLGl~--v~~vtG~~~~~~dr~~~g~~g~-aG~A~sstAGnAvatPaavA~adPs~~~~-a~~ATaqvAaavivTai 300 (314)
T TIGR00793 225 LGILLGVS--VIILTGIPLILADKFIGGGDGT-AGIAASSSAGAAVATPVLIAEMVPAFKPV-APAATALVATSVIVTSL 300 (314)
T ss_pred chHHHHHH--HHHHHhHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhhhHHHHHHhChhhhhh-HHHHHHHHHHHHHHHHH
Confidence 22222121 22223344455666663 2333 22333221111111222333332222222 23233334456677888
Q ss_pred hHHHHHHHHhchh
Q 043324 402 MAGPVVSFIMRKQ 414 (788)
Q Consensus 402 i~~~lv~~l~~~~ 414 (788)
++|.++.|++||.
T Consensus 301 L~Pilta~~~kr~ 313 (314)
T TIGR00793 301 LVPIATVWWSKKV 313 (314)
T ss_pred HHHHHHHHHHHhc
Confidence 8898999988764
No 54
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=96.67 E-value=0.014 Score=53.41 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=34.2
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
+|++++-+++..+.++++|.+||+..+.++|++++.+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~ 37 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVD 37 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5788888889999999999999999999999999986
No 55
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.49 E-value=0.12 Score=56.07 Aligned_cols=137 Identities=11% Similarity=0.103 Sum_probs=74.3
Q ss_pred HHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043324 270 HCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLK 349 (788)
Q Consensus 270 GaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~ 349 (788)
.+++.|+.+.+ +.+.+ ++.......+++|++-...|.++|+..+... .+. .+++.+..++......+...|+++
T Consensus 178 lplliG~~lgn---l~~~l-~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~-G~~-GilL~~~~~~~t~~~~~~~~Rl~~ 251 (326)
T PRK05274 178 LPLLVGFILGN---LDPEL-RQFLGKAVPVLIPFFAFALGNGIDLGTIITA-GLS-GILLGVAVVAVTGIPLYLADRLIG 251 (326)
T ss_pred HHHHHHHHHHh---HHHhh-HHHhcCCcEEEHHHHHHHHhcceeHhHHHhc-CCc-chhhhhhHhhccchhhHhHhheee
Confidence 67888888885 33332 3444456667999999999999999876532 122 122223333344444455557774
Q ss_pred C-CchHHHHHHH--HHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHhchhhh
Q 043324 350 I-PLNIEAVILA--FILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIMRKQEV 416 (788)
Q Consensus 350 ~-~~~~~a~~lg--lll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~~~~~~ 416 (788)
. +.- ....++ ..-+.-|-.. ++...-..+-. .++.-..+..++++++++.|.+..|++|+.++
T Consensus 252 ~~~g~-~g~a~~ttaG~aic~pAA--vaa~~p~~~~~-~~~at~~VA~~vivt~il~P~l~~~~~k~~~~ 317 (326)
T PRK05274 252 GGNGV-AGAAAGSTAGNAVATPAA--VAAADPSFAPF-APAATAQVAAAVIVTAILAPILTAWWSKRVGK 317 (326)
T ss_pred cCCCc-chHHHHHHHHHHHHHHHH--HHhhccccccc-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 221 112221 1112222222 22222222223 44444445556668888888888888877554
No 56
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=96.47 E-value=0.02 Score=52.84 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=34.9
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
||++++-|.+..++|+++|.++|++.+..++++++.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 37 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVET 37 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEec
Confidence 5889999999999999999999999999999999986
No 57
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.47 E-value=1.3 Score=47.94 Aligned_cols=102 Identities=9% Similarity=-0.029 Sum_probs=62.0
Q ss_pred hccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHH
Q 043324 39 KPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGG 118 (788)
Q Consensus 39 ~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~ 118 (788)
+...++..+--|+.|+++|+..++.-+.++ + ...-..+.+-.+| .-+.|.++++..+.+.+.+...+....
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~----~-Gi~~~~k~~Lr~g----IVLlG~~l~~~~i~~~G~~~~~~~~~~ 92 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFK----P-GIKFSSKKLLRLG----IVLLGFRLSFSDILALGWKGLLIIIIV 92 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHH----h-HHHHHHHHHHHHH----HHHHCccccHHHHHHhCccHHHHHHHH
Confidence 346788888889999999973333222111 0 1111123455666 345699999999999999888877777
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhccchhHHHHHHHHHHhc
Q 043324 119 FMACGIFGAAIS-WFIIRELTISYNKIAFAIVTIIIIAN 156 (788)
Q Consensus 119 ~~ip~~l~~~~~-~~l~~~~~~~~~~~~~~l~lg~~ls~ 156 (788)
+..++.++..++ ..+ +. +...+.+++.-.|+
T Consensus 93 v~~~~~~~~~lg~r~~-~l------~~~~~~Lia~GtsI 124 (305)
T PF03601_consen 93 VILTFLLTYWLGRRLF-GL------DRKLAILIAAGTSI 124 (305)
T ss_pred HHHHHHHHHHHHHHHh-CC------CHHHHHHHHhhccc
Confidence 777766666555 322 32 34445555544444
No 58
>PRK09982 universal stress protein UspD; Provisional
Probab=96.43 E-value=0.016 Score=55.28 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=36.3
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
++|+++.=|.++.+.|+++|.++|+.++++++++|+++
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~ 41 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDD 41 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 68999999999999999999999999999999999986
No 59
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.34 E-value=2.2 Score=46.72 Aligned_cols=85 Identities=11% Similarity=-0.005 Sum_probs=52.7
Q ss_pred HhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHH
Q 043324 38 FKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYG 117 (788)
Q Consensus 38 ~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~ 117 (788)
+++.+++..+--|+.|+++|+......+. .+- +...-..+.+-.+|+ -+.|.+++++++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~-~Gi~f~~k~lLr~gI----VLlG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKK-RGVLFAKPFLLRIGI----TLYGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hcc-chHHHHHHHHHHHHH----HHHCccccHHHHHHhhHHHHHHHHH
Confidence 35568888888889999998754211121 111 111111234556663 3469999999999999988777666
Q ss_pred HHHHHHHHHHHHH
Q 043324 118 GFMACGIFGAAIS 130 (788)
Q Consensus 118 ~~~ip~~l~~~~~ 130 (788)
.+..++.++..++
T Consensus 98 ~v~~~~~~~~~~g 110 (335)
T TIGR00698 98 ILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555554444
No 60
>PRK15456 universal stress protein UspG; Provisional
Probab=96.26 E-value=0.046 Score=51.86 Aligned_cols=135 Identities=11% Similarity=0.121 Sum_probs=74.4
Q ss_pred cEEEEEccCCc--cHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHH
Q 043324 608 QSVATLFFGGP--DDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDD 685 (788)
Q Consensus 608 ~~i~v~f~GG~--DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~ 685 (788)
+||+++.=|.+ ....|+++|.++|+.. .+++++|+++... .... .. .. ...+.. ++..++.-+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~-~~~~---~~-~~----~~~~~~-----~~~~~~~~~ 67 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSA-SLSL---HR-FA----ADVRRF-----EEHLQHEAE 67 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcc-cccc---cc-cc----cchhhH-----HHHHHHHHH
Confidence 58999998874 6899999999999875 5899999986321 1000 00 00 000000 001112223
Q ss_pred HHHHHHHHhccCCCceEEEEEecCChHHHHHHHHhh--cCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcC
Q 043324 686 VYMDEFYKRYVSSGQIGYVEKNLRDGAETLQALRDI--GDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASM 763 (788)
Q Consensus 686 ~~~~~~~~~~~~~~~v~y~E~~v~~~~~~~~~i~~~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 763 (788)
+.++++..+... +.+.+. ..+..|. ..+.|.+. +.+.||+|+|.+++ . +.+ .=+|-..+-++..
T Consensus 68 ~~l~~~~~~~~~-~~~~v~-~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~-~------~~~----~llGS~a~~v~~~ 133 (142)
T PRK15456 68 ERLQTMVSHFTI-DPSRIK-QHVRFGS-VRDEVNELAEELGADVVVIGSRNP-S------IST----HLLGSNASSVIRH 133 (142)
T ss_pred HHHHHHHHHhCC-CCcceE-EEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCC-C------ccc----eecCccHHHHHHc
Confidence 455666544322 223332 2233331 12223222 24689999999753 1 111 2378888888766
Q ss_pred CCCCceeEEEE
Q 043324 764 DFDIKSSVLVI 774 (788)
Q Consensus 764 d~~~~~SvLVv 774 (788)
++++||||
T Consensus 134 ---a~~pVLvV 141 (142)
T PRK15456 134 ---ANLPVLVV 141 (142)
T ss_pred ---CCCCEEEe
Confidence 66799997
No 61
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.21 E-value=0.11 Score=55.29 Aligned_cols=142 Identities=17% Similarity=0.227 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhH-HHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHH
Q 043324 252 LLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTR-TLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMV 330 (788)
Q Consensus 252 ~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~-~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~ 330 (788)
.....+.+++.++++.++|-.++|+++.... ++. .-.+.++ .+..+-+.++....|+++|++.+.+ .+.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~-~l~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVN-HLAEFGVILLMFLIGLELDLERLWK--LRKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHH-HHHHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHH
Confidence 3445678889999999999999999996321 110 0012233 3556777788889999999988865 333333333
Q ss_pred HHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHH
Q 043324 331 SLSIAGK-ILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTL 401 (788)
Q Consensus 331 ~~~~~~K-~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~ 401 (788)
...++.- ++..+...++++.++. +++.+|..+++-. .-++..+..|.+.. +.+.-..++..++++-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lg~~ls~Ts--~~v~~~il~~~~~~-~~~~g~l~l~~~~~~D~ 146 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALG-AAVVIGIILALSS--TAVVVQVLKERGLL-KTPFGQTVLGILLFQDI 146 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhH--HHHHHHHHHHcCcc-cChHHHHHHHHHHHHHH
Confidence 3333333 4444556778899999 9999999887654 23344455556665 54444444444444433
No 62
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.09 E-value=2.7 Score=45.38 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH-----hccc
Q 043324 84 AFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIII-----ANSA 158 (788)
Q Consensus 84 ~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~l-----s~Ts 158 (788)
-...+.++||..|+.+..+.+++..|+... -+.+....|++--.+++.+...+ +.+.-+..|..+ +.|+
T Consensus 40 ~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~-vligl~~qfvlmPlla~~~~~~~-----~l~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 40 IPIALALIMFGMGLTLSREDFLAGLKHPRL-VLIGLAAQFVLMPLLALLLAKLF-----PLPPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHhHHheeeCCCchh
Confidence 467788899999999999998866554322 23334444443333333332221 122233444443 3333
Q ss_pred HHHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC----chhHHHH----HHHHHHHHHHHHHHHHHH
Q 043324 159 SPVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDG----MFKTLLL----SIFLTASLILVNCYLVIW 230 (788)
Q Consensus 159 ~~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~----~~~~~~l----~~l~~~~~~~v~r~~~~~ 230 (788)
+ .+...+.+ .++ -.+++.+.++.+++.++.=+...+.-++ ..+.... .+++=.+.+.+.|+..+.
T Consensus 114 S-~~~t~lAk-----GnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~ 186 (319)
T COG0385 114 S-NAMTYLAK-----GNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPK 186 (319)
T ss_pred H-HHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333332 233 4566677777787776654444443222 1222222 222334556666766554
Q ss_pred HHhh
Q 043324 231 FNTK 234 (788)
Q Consensus 231 l~~~ 234 (788)
..++
T Consensus 187 ~~~~ 190 (319)
T COG0385 187 WVER 190 (319)
T ss_pred HHHH
Confidence 3333
No 63
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.09 E-value=0.13 Score=61.28 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhH-HHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHH
Q 043324 246 VLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTR-TLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVI 324 (788)
Q Consensus 246 ~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~-~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~ 324 (788)
+.+.++.+.+...++..+|+++++|=.++|+++.... ++- .-.+.++ .+.++-+.++...+|+++|+..++.. ..
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~-lg~i~~~~~i~-~laelGvv~LlF~iGLEl~~~~l~~~--~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWG-LRLVTDVESIL-HFAEFGVVLMLFVIGLELDPQRLWKL--RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccc-ccCCCCHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence 4456667777888999999999999999999995321 110 0012233 35677777888899999999887642 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHH
Q 043324 325 VALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKG 367 (788)
Q Consensus 325 ~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG 367 (788)
.++.+-..-++.-.+..+..++++|.+|. .++.+|..++.-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~-~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQ-VALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHH
Confidence 22222222222233344456678899999 9999998775443
No 64
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.94 E-value=2.2 Score=47.52 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhHHHHHHHhhhc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHhhH-
Q 043324 290 HKLTYAVHNFVLPSYFGFTGFQ-FNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPL-NIEAVILAFILNLK- 366 (788)
Q Consensus 290 ek~~~~~~~l~lplFFv~~G~~-idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~-~~~a~~lglll~~k- 366 (788)
.+...++..-+.+...+-+|+. +|+..+...-++.. +++++..+++-.++.++.+++.|+-. . .+...|+.|+.+
T Consensus 299 ~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g~YPvE-sAItaGLC~an~G 376 (414)
T PF03390_consen 299 KQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQY-VVIVLATVLGAVIGAFLVGKLVGFYPVE-SAITAGLCMANMG 376 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHhhhcccCCC
Confidence 4555566666777777788988 89888765445553 44555666778888899999999755 4 456666667655
Q ss_pred HHHHHHHHhhcCcCCCC
Q 043324 367 GHADLVVVDASPNSEKW 383 (788)
Q Consensus 367 G~~~li~~~~~~~~~il 383 (788)
|.-+++++..+...+++
T Consensus 377 GtGDvAVLsAa~RM~Lm 393 (414)
T PF03390_consen 377 GTGDVAVLSAANRMELM 393 (414)
T ss_pred CCCcchheehhhhcccc
Confidence 56677777777777766
No 65
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.90 E-value=3.1 Score=44.63 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhH-HHHHHHHHhhcC
Q 043324 333 SIAGKILGTLLACYYLKIPLNIEAVILAFILNLK-GHADLVVVDASP 378 (788)
Q Consensus 333 ~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~k-G~~~li~~~~~~ 378 (788)
..+.-+...++.++.+|.+.+ |+..+++-...| +..++.++....
T Consensus 204 l~~~~~~~g~~~a~~~~l~~~-~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 204 LPLAGFLLGYLLAKLAGLPWA-RCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCHh-hheeeeeeeecccHHHHHHHHHHhc
Confidence 334455566777788899988 888777755544 446666655433
No 66
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.83 E-value=0.27 Score=53.11 Aligned_cols=173 Identities=12% Similarity=0.092 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHH----HhChhhHHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHH
Q 043324 249 ILVLLISVSMIIE----SSGLYSTVHCFLVGMMFPR-EGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNV 323 (788)
Q Consensus 249 il~~~l~~~~~~e----~~G~~~~lGaflaGL~l~~-~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~ 323 (788)
.+++.....++++ ..++++.+=|.+.|+++.| .....+...+-++ +....++.+=-+..|.++++..+.+. .+
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~-~~~k~~Lr~gIVLlG~~l~~~~i~~~-G~ 83 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIK-FSSKKLLRLGIVLLGFRLSFSDILAL-GW 83 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHH-HHHHHHHHHHHHHHCccccHHHHHHh-Cc
Confidence 3344444444544 3577888889999999996 3333344333333 45567888889999999999887652 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhh---HHHHHHHHHHHH
Q 043324 324 IVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDI---RRLLLSVIVLNT 400 (788)
Q Consensus 324 ~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~---~~~lv~~~lltt 400 (788)
...+..++..+..=.++.++..+.+|++.+ .+..++...+.-|.-+++...-..+.+ +++. .....+.-++..
T Consensus 84 ~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~-~~~Lia~GtsICG~SAi~A~a~~i~a~---~~~~a~ava~V~lfg~vam 159 (305)
T PF03601_consen 84 KGLLIIIIVVILTFLLTYWLGRRLFGLDRK-LAILIAAGTSICGASAIAATAPVIKAK---EEDVAYAVATVFLFGTVAM 159 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHhhcccchHHHHHHHcccccCC---CCceeeeehHHHHHHHHHH
Confidence 223333333333333444444499999999 999999999888877766555444433 2222 223333334555
Q ss_pred HhHHHHHHHHhchhhhhhhcccccccc
Q 043324 401 LMAGPVVSFIMRKQEVQLTHNRTSIEC 427 (788)
Q Consensus 401 ~i~~~lv~~l~~~~~~~~~~~~~~i~~ 427 (788)
++-|.+.+++.-....+.-+---++++
T Consensus 160 ~~~P~l~~~l~l~~~~~G~w~G~sIh~ 186 (305)
T PF03601_consen 160 FLYPLLGHALGLSPQQFGAWAGGSIHD 186 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHhhhhhcc
Confidence 566777776655544444444444443
No 67
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.80 E-value=3.7 Score=44.73 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHhChh--hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccch-hH
Q 043324 246 VLLILVLLISVSMIIESSGLY--STVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTI-DN 322 (788)
Q Consensus 246 ~~~il~~~l~~~~~~e~~G~~--~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~-~~ 322 (788)
+...+..++..+++.+.+++. ..+|+++.+.++...+.....+-+. ...+..-+.=..+|.+++...+... ..
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~----l~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPW----LVNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 445556667778888888874 6788888877766321111111111 1222222445678888887666542 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHh
Q 043324 323 VIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLM 402 (788)
Q Consensus 323 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i 402 (788)
+...+...+..+..-.+..++..++.++|+. +++ +.+.|-|.-|+.+.....+.+.- --..+.++ =.+...++
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~-t~~---La~aPGGl~eM~l~A~~l~~d~~-~V~~~q~~--Rl~~v~~~ 305 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFL-TAL---LATAPGGLAEMALIALALGADVA-FVAAHQVV--RLLFVLLL 305 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHH---HHhCCccHHHHHHHHHHcCCChH-HHHHHHHH--HHHHHHHH
Confidence 4444555556666777888888999999988 665 44689999998887766654321 01111111 11222345
Q ss_pred HHHHHHHHhch
Q 043324 403 AGPVVSFIMRK 413 (788)
Q Consensus 403 ~~~lv~~l~~~ 413 (788)
.|++.+++.|+
T Consensus 306 ~p~~~r~~~r~ 316 (318)
T PF05145_consen 306 APFIARWLRRR 316 (318)
T ss_pred HHHHHHHHHHh
Confidence 67777777654
No 68
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.23 Score=55.90 Aligned_cols=151 Identities=17% Similarity=0.270 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCch-hHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHH
Q 043324 246 VLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKT-TRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVI 324 (788)
Q Consensus 246 ~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~-~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~ 324 (788)
+..++..+...+.+.+.+|+++++|=.++|+++.+..-. -.+ .+.......++=.-++...+|+.+|+..++......
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~-~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~ 89 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIE-SSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSV 89 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCC-chHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhh
Confidence 445666677777999999999999999999999852111 111 112222345555666777899999998886522221
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHh
Q 043324 325 VALVMVSLSIAGKILGT--LLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLM 402 (788)
Q Consensus 325 ~~~~i~~~~~~~K~~~~--~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i 402 (788)
......+.+..-++.. +... +++.+++ +++.+|..+..-.. -+.+.+..|.|.. ..+..+..+...++.=+.
T Consensus 90 -~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~-~al~lg~~l~~sS~--~i~~~iL~e~~~~-~~~~g~~~l~~~i~~Di~ 163 (397)
T COG0475 90 -GLGVAQVGLTAPFLLGLLLLLG-ILGLSLI-AALFLGAALALSST--AIVLKILMELGLL-KTREGQLILGALVFDDIA 163 (397)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHH-HhccChH-HHHHHHHHHHHHHH--HHHHHHHHHhccc-cchHHHHHHHHHHHHHHH
Confidence 2222222222222222 2223 5899999 99999987765542 1233444555555 555554444444444333
Q ss_pred H
Q 043324 403 A 403 (788)
Q Consensus 403 ~ 403 (788)
+
T Consensus 164 ~ 164 (397)
T COG0475 164 A 164 (397)
T ss_pred H
Confidence 3
No 69
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=95.74 E-value=0.054 Score=59.65 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=36.2
Q ss_pred ccEEEEEccCCccHHHHHHHHHHHhhCC--ceEEEEEEccc
Q 043324 607 LQSVATLFFGGPDDREAIACSKRLAMHH--HLNLTVIRFLP 645 (788)
Q Consensus 607 ~~~i~v~f~GG~DDreAL~~a~rma~~~--~v~ltv~r~~~ 645 (788)
.+||++++=|.+..+.|+++|..+|+.. +++++++|+++
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~ 45 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAAS 45 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEec
Confidence 3799999999999999999999999985 69999999987
No 70
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.71 E-value=0.098 Score=56.17 Aligned_cols=124 Identities=12% Similarity=0.185 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHH
Q 043324 252 LLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVS 331 (788)
Q Consensus 252 ~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~ 331 (788)
+.+.-....+..|+++..=|.+.|+++....+.+.+...-++ +-...++.+=.+..|+++++.++.+. .+. .+.+.+
T Consensus 24 ~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~-fs~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~ 100 (334)
T COG2855 24 MLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGIT-FSSKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIA 100 (334)
T ss_pred HHHhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchh-hhHHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHH
Confidence 333334455566777889999999999865554444333333 56677888888999999999887652 122 344445
Q ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCc
Q 043324 332 LSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPN 379 (788)
Q Consensus 332 ~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~ 379 (788)
..+..-++.+++..+++|+|++ .+..+|..-+.-|.-++...+-..+
T Consensus 101 ~~l~~t~~~~~~lg~~lgld~~-~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 101 ITLSSTFLFAYFLGKLLGLDKK-LALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH-HHHHHHccchhhHHHHHHHhCCcCC
Confidence 5556667777888889999999 9999999988888766655544333
No 71
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.61 E-value=0.47 Score=56.46 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=62.2
Q ss_pred HHHHHHHhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhH
Q 043324 32 HLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLV 111 (788)
Q Consensus 32 ~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~ 111 (788)
....++.+.+|+..++|-.++|++++.+-.. . ..+.-++-+..+.+.+|...+|+++|+..+...+...
T Consensus 226 l~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~---~--------~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~i 294 (601)
T PRK03659 226 LGSALFMDALGLSMALGTFIAGVLLAESEYR---H--------ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWV 294 (601)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHhcCCchH---H--------HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHH
Confidence 3445667888999999999999998853211 1 0111233356677778888999999999887765433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcc
Q 043324 112 TTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANS 157 (788)
Q Consensus 112 ~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 157 (788)
+.+.+..++.=++.+++.+. +++. ++..++.+|..++..
T Consensus 295 l~~~~~~l~~K~~~~~~~~~-~~g~------~~~~al~~g~~L~~~ 333 (601)
T PRK03659 295 LISVVVLVAVKGLVLYLLAR-LYGL------RSSERMQFAGVLSQG 333 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCC------CHHHHHHHHHHHhcc
Confidence 32222222221222222222 2232 556667777666653
No 72
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.61 E-value=0.11 Score=52.13 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=77.1
Q ss_pred HHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChh-----HHHhhhhhHHHHHHHHHHH
Q 043324 47 VAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVP-----FMKRNLHLVTTVAYGGFMA 121 (788)
Q Consensus 47 i~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~-----~l~~~~~~~~~i~~~~~~i 121 (788)
++.+++|+++|-........ .+...+..+.+++|.+|+++--+ .+++.+++++.+.+..++-
T Consensus 2 l~~li~Gi~lG~~~~~~~~~-------------~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSL-------------IDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhcccccc-------------cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888643222111 13356677888999999988443 5677778999998888887
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 043324 122 CGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSL 197 (788)
Q Consensus 122 p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l 197 (788)
+++.+.+++.++ +. +...++.++.-+.- ......+++|++ +.+.|.++.=+=++-+++++++.-+
T Consensus 69 Sllgg~l~~~ll-~~------~~~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~ 133 (191)
T PF03956_consen 69 SLLGGLLASLLL-GL------SLKESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPL 133 (191)
T ss_pred HHHHHHHHHHHh-cC------CHHHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666654 54 45555544433221 112233445543 4567777666666666666555433
No 73
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.60 E-value=0.29 Score=57.78 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCC-chhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHH
Q 043324 248 LILVLLISVSMIIESSGLYSTVHCFLVGMMFPREG-KTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVA 326 (788)
Q Consensus 248 ~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~-~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~ 326 (788)
.+++.++++..+...+|++.++|=.++|+++.... ..-+. .+-++ .+.++-+.++...+|+++|+..+... ....
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~-~la~lGli~llF~~Gle~d~~~l~~~--~~~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAP-ELAELGVILLMFGVGLHFSLKDLMAV--KSIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHH-HHHHHHHHHHHHHhHhcCCHHHHHHH--hhHH
Confidence 34566677788888999999999999999996322 11001 12233 35666677777889999999877542 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhh
Q 043324 327 LVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDI 388 (788)
Q Consensus 327 ~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~ 388 (788)
....+..++.-++..+.....+++++. +++.+|..++.-.. .++...-.+.|.+ +.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~lg~~ls~tS~--~vv~~~L~e~~~l-~s~~ 146 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLM-TGIVFGLCLSTAST--VVLLRALEERQLI-DSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHH--HHHHHHHHhcCcc-cCcc
Confidence 111112222223334455667889999 99999987776433 3445555666666 4433
No 74
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.31 E-value=0.21 Score=59.09 Aligned_cols=118 Identities=23% Similarity=0.238 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHH-HHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHH
Q 043324 248 LILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTL-LHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVA 326 (788)
Q Consensus 248 ~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l-~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~ 326 (788)
+++++...+..++..+|++.+++-.++|+++.....-.-.. .......+..+.+++.....|+++|+..+.. .+...
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~--~~~~~ 90 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP--ALGPA 90 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH--HHHHH
Confidence 34555666677888899999999999999987432110000 1123345678889999999999999988875 34444
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhCCCchHHHHHHHHHHhhHHH
Q 043324 327 LVMVSLSIAGKILG-TLLACYYLKIPLNIEAVILAFILNLKGH 368 (788)
Q Consensus 327 ~~i~~~~~~~K~~~-~~l~~~~~~~~~~~~a~~lglll~~kG~ 368 (788)
..+....++.-.+. ++...++++.+|. +++.+|..+++-..
T Consensus 91 ~~la~~gv~~t~~~~g~~~~~l~g~~~~-~alllgai~s~Td~ 132 (562)
T PRK05326 91 LSLATLGVLITAGLTGLFAHWLLGLDWL-EGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHHhhhhccCch
Confidence 43333333333333 4455667899999 99999988776653
No 75
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.13 E-value=0.67 Score=45.55 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=77.5
Q ss_pred HHHHHHHHHH-H-hccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHH-
Q 043324 28 LVVSHLFHLI-F-KPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFM- 104 (788)
Q Consensus 28 l~~~~l~~~l-~-~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l- 104 (788)
+.++.+++.+ . +++++-...|-+++|+++|. +++..+ .+.+. ...+.+.++|+.+|++.+|++--++.+
T Consensus 6 i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~--~~~~~~---~~~~~---~~~~~l~~~GL~lFl~~VGl~aG~~F~~ 77 (169)
T PF06826_consen 6 IALGYLLGRIKIPGGFSLGAAGGVLFVGLILGA--LGRTGP---IFLPI---SAPSFLRQLGLALFLAAVGLSAGPGFFS 77 (169)
T ss_pred HHHHHHhcceeeccceeccccHHHHHHHHHHHH--hhhccC---CCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433 2 56666677788899999886 222212 11222 234568899999999999999888754
Q ss_pred --HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-HHHhcccHHHHHHHHHh
Q 043324 105 --KRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTI-IIIANSASPVVIRLAAD 168 (788)
Q Consensus 105 --~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 168 (788)
|+.+.+....++.-..+|.+++..+++++++. + .....| .+=+.|++|.+....+.
T Consensus 78 ~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l------~--~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 78 SLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKL------N--PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC------C--HHHHHHHHHccccCcHHHHHHHHh
Confidence 55556666666666667777776666644343 2 223333 34466888888777665
No 76
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.92 E-value=7.2 Score=42.72 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhH-HHHHHHHHhh
Q 043324 332 LSIAGKILGTLLACYYLKIPLNIEAVILAFILNLK-GHADLVVVDA 376 (788)
Q Consensus 332 ~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~k-G~~~li~~~~ 376 (788)
+..+.-+...+..++.+|.+.+ |+..+.+--+.| +..++.++..
T Consensus 254 l~~~~~~~lg~~~~r~~~l~~~-~~~a~~~e~g~qN~~lai~lA~~ 298 (328)
T TIGR00832 254 IYFYIMFFLTFALAKKLGLPYS-ITAPAAFTGASNNFELAIAVAIS 298 (328)
T ss_pred HHHHHHHHHHHHHHHHhCcChh-hhhhheehhhhhhHHHHHHHHHH
Confidence 3444556666777899999999 998888765554 3445554443
No 77
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.86 E-value=2.8 Score=41.88 Aligned_cols=107 Identities=18% Similarity=0.327 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHH
Q 043324 86 FARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGI----FGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPV 161 (788)
Q Consensus 86 igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~----l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~v 161 (788)
+.+.+.||..|++++++++++..|+...+. .+.+.-++ +++++++.+++. .......+++. ..++++ .
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~~~~~~----~~~~~~Gl~l~-~~~P~~--~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAWLLLPL----SPALALGLLLV-AACPGG--P 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH-HHTT------HHHHHHHHHH-HHS-B---T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHH-hcCCcH--H
Confidence 356679999999999999998776654432 22333333 334443222221 01111222211 122222 2
Q ss_pred HHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043324 162 VIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAFTE 203 (788)
Q Consensus 162 v~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~ 203 (788)
.+...+.+. +.+. .++.+...++.+.+.++.-+...+..
T Consensus 74 ~s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 74 ASNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHHh
Confidence 333444432 3333 36666677777777666555554443
No 78
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.84 E-value=1 Score=49.28 Aligned_cols=154 Identities=12% Similarity=0.181 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHH-----hChhhHHHHHHHHhhccCCC--chhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhH
Q 043324 250 LVLLISVSMIIES-----SGLYSTVHCFLVGMMFPREG--KTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDN 322 (788)
Q Consensus 250 l~~~l~~~~~~e~-----~G~~~~lGaflaGL~l~~~~--~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~ 322 (788)
+.+.+.+.++++. .++++.+=|.+.|+++.|.. +..+....- .++....++-+=-+..|.++++.++... .
T Consensus 11 ~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~G-i~f~~k~lLr~gIVLlG~~l~~~~i~~~-G 88 (335)
T TIGR00698 11 ALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRG-VLFAKPFLLRIGITLYGFRLTFPYIADV-G 88 (335)
T ss_pred HHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccch-HHHHHHHHHHHHHHHHCccccHHHHHHh-h
Confidence 3334444445443 47788888899999988621 122221111 2245556677778899999999887542 2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhh-H--HHHHHHHHH
Q 043324 323 VIVALVMVSLSIAGKILG-TLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDI-R--RLLLSVIVL 398 (788)
Q Consensus 323 ~~~~~~i~~~~~~~K~~~-~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~-~--~~lv~~~ll 398 (788)
+. .+.+.+..+..-+.. .++..|.+|++++ .+..++...+.-|.-+++...-..+.+ +++. + +..++.-.+
T Consensus 89 ~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~-~~~Lia~GtsICGaSAi~A~a~~i~A~---~~~~a~ava~V~lfgt~ 163 (335)
T TIGR00698 89 PN-EIVADTLILTSTFFLTVFLGSSRLKLDKQ-MSILLGAGSSICGAAAVAAIEPVIKAE---KEKVSVAIAIVVIFGTT 163 (335)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHcchhHHHHHHHHHhccccCCC---ccceeeeehHHHHHHHH
Confidence 32 223333333334444 4454589999999 999999998888876666554444332 2222 1 223333345
Q ss_pred HHHhHHHHHHHH
Q 043324 399 NTLMAGPVVSFI 410 (788)
Q Consensus 399 tt~i~~~lv~~l 410 (788)
.+++-|++.+++
T Consensus 164 am~l~P~l~~~l 175 (335)
T TIGR00698 164 GIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHHH
Confidence 555566666554
No 79
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=94.67 E-value=7.2 Score=42.59 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=54.8
Q ss_pred HHHhHHHHHHHhhhc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHH-HHHHHHHhhH-HHHHHHH
Q 043324 297 HNFVLPSYFGFTGFQ-FNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEA-VILAFILNLK-GHADLVV 373 (788)
Q Consensus 297 ~~l~lplFFv~~G~~-idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a-~~lglll~~k-G~~~li~ 373 (788)
+.+.-|+.+ .+|.. +|+..+.+.-+|..++ +.+...++-..+.++.+|+.|+-+- |+ ..-|+.|+.+ |.-++++
T Consensus 326 k~~t~~Lm~-giGv~ytdl~ev~~alt~~~vi-i~~~vVl~~i~~~~f~grl~~~YPV-EaAI~aglC~a~~GGtGDvaV 402 (438)
T COG3493 326 KNLTWPLMA-GIGVAYTDLNEVAAALTWQNVI-IALSVVLGAILGGAFVGRLMGFYPV-EAAITAGLCMANMGGTGDVAV 402 (438)
T ss_pred HhhHHHHHH-hhhhccccHHHHHHHhchhHHH-HHHHHHHHHHHHHHHHHHHhcCCch-HHHHHHhHHhcCCCCCCchHH
Confidence 445555544 56666 7887766544566533 4445556778888999999997555 55 5555888776 4556777
Q ss_pred HhhcCcCCCC
Q 043324 374 VDASPNSEKW 383 (788)
Q Consensus 374 ~~~~~~~~il 383 (788)
++.+-..+++
T Consensus 403 LsAa~RM~Lm 412 (438)
T COG3493 403 LSAADRMELM 412 (438)
T ss_pred hhhcchhccc
Confidence 7776666665
No 80
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.65 E-value=0.87 Score=56.19 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=28.4
Q ss_pred CCceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecC
Q 043324 431 ESELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELP 475 (788)
Q Consensus 431 ~~elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~ 475 (788)
+...||.+...|-.+-+..+.++..++.. ..+++.++|.+.-.
T Consensus 628 ~~~~~v~~~F~GG~DDREALa~a~rma~~--p~v~lTVirf~~~~ 670 (832)
T PLN03159 628 QVSHHVAVLFFGGPDDREALAYAWRMSEH--PGITLTVMRFIPGE 670 (832)
T ss_pred ccceeEEEEecCCcchHHHHHHHHHHhcC--CCeEEEEEEEEccc
Confidence 44568887775554446677777777643 34788999998543
No 81
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.47 E-value=0.69 Score=55.61 Aligned_cols=71 Identities=4% Similarity=0.040 Sum_probs=54.5
Q ss_pred HHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchHHHHHHHHHHhhHHHH
Q 043324 296 VHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYY--LKIPLNIEAVILAFILNLKGHA 369 (788)
Q Consensus 296 ~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~--~~~~~~~~a~~lglll~~kG~~ 369 (788)
+..+.+++-....|++++...+.. .|..+..+++..+..-++++.+.+++ .+++|. .++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~-~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFP-ASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhhcCCcHH
Confidence 566777888889999999998875 57766666666666666666666654 499999 999999999887654
No 82
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.39 E-value=0.25 Score=47.78 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=66.8
Q ss_pred ChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhh----hHHHHHHHHH
Q 043324 44 PGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLH----LVTTVAYGGF 119 (788)
Q Consensus 44 P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~----~~~~i~~~~~ 119 (788)
-..-|-+++|+++|. +++..+..+-.|. .....+.++|+.+|++.+|++--++.+..-.+ ....++..-.
T Consensus 22 G~~~G~L~vgL~~G~--~~~~~p~~~~~p~----~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~ 95 (154)
T TIGR01625 22 GNAGGVLFVGLLLGH--FGATGPLTWYIPF----SANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALIT 95 (154)
T ss_pred cccHHHHHHHHHHHh--ccccCCcceecCh----hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 336788999999986 3443332222222 23456889999999999999998876543333 2233333334
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-HHHhcccHHHHHHHHHhcC
Q 043324 120 MACGIFGAAISWFIIRELTISYNKIAFAIVTI-IIIANSASPVVIRLAADLK 170 (788)
Q Consensus 120 ~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el~ 170 (788)
++|.+++..+..++++. +. ....| ++=+.|++|.+....+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~------~~--~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 96 VVPTLLVAVALIKLLRI------NY--ALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHhCC------CH--HHHHHHHhccccChHHHHHHHHHhc
Confidence 44545554444443333 22 23333 3457788898877766543
No 83
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=94.37 E-value=9.4 Score=41.54 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhccChhHHHhhhhhH
Q 043324 83 YAFFARIFFMFLLGLEFDVPFMKRNLHLV 111 (788)
Q Consensus 83 l~~igl~lllF~~Gle~d~~~l~~~~~~~ 111 (788)
...+++..++|..|+.++.+++++..|+.
T Consensus 32 ~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~ 60 (313)
T PF13593_consen 32 VIKYGVALIFFISGLSLPTEELKAALRNW 60 (313)
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHhcc
Confidence 45566777889999999999998765553
No 84
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.23 E-value=2.9 Score=45.62 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHhhccCCCchhHHHHHHHHH---HHHHHhHHHHHHHhhhc-cccccccchhHHHHHHHHHHHHHHHHHH
Q 043324 264 GLYSTVHCFLVGMMFPREGKTTRTLLHKLTY---AVHNFVLPSYFGFTGFQ-FNISSLSTIDNVIVALVMVSLSIAGKIL 339 (788)
Q Consensus 264 G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~---~~~~l~lplFFv~~G~~-idl~~l~~~~~~~~~~~i~~~~~~~K~~ 339 (788)
++|+..-..++|.++..-+-..+++.++... ++..-+.+..++.+|+. +|+..+.+.-+|. .+++++..+++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHH
Confidence 6788888888888887544444555555443 33333444445556766 7877765522343 45566667778888
Q ss_pred HHHHHHHHhCCCc-hHHHHHHHHHHhhH-HHHHHHHHhhcCcCCCC
Q 043324 340 GTLLACYYLKIPL-NIEAVILAFILNLK-GHADLVVVDASPNSEKW 383 (788)
Q Consensus 340 ~~~l~~~~~~~~~-~~~a~~lglll~~k-G~~~li~~~~~~~~~il 383 (788)
++++.+++.|+-+ . .+...|+.|+.+ |.-+++++..+...+++
T Consensus 282 ~s~lvGKllG~YPiE-~aItagLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 282 GGAFLGKLMGMYPVE-SAITAGLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred HHHHHHHHhCCChHH-HHHHHhhhccCCCCCCceeeeehhhhcccc
Confidence 8999999999654 4 455566677655 55667777777766665
No 85
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=94.10 E-value=0.23 Score=46.95 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=40.8
Q ss_pred hHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 536 YEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 536 ~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
.+.|+..|.+.++|+|++|-+++++.++ -.++++-++|++++||+|-+.
T Consensus 102 ~~~i~~~a~~~~adliV~G~~g~~~l~~------~llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 102 AEEILELAEEEDADLIVVGSRGRSGLSR------LLLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCccccc------eeeehhHHHHHhcCCCCEEEE
Confidence 5899999999999999999987766544 236677899999999997654
No 86
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.70 E-value=1.7 Score=42.09 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhccCCC--hhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhH
Q 043324 26 GILVVSHLFHLIFKPLGQP--GPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPF 103 (788)
Q Consensus 26 lil~~~~l~~~l~~~l~~P--~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~ 103 (788)
+.+.++.+.+++++++|+| .++|.++++.++.- .+..+. -+| . .+..++.+++--.+|.+++.+.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~~---~~P-----~---~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLEI---TLP-----P---WLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCccC---CCC-----H---HHHHHHHHHHHHHHHccCCHHH
Confidence 3456777889999999998 55566555555542 121111 111 1 2344555557789999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 104 MKRNLHLVTTVAYGGFMACGIFGAAISWFIIRE 136 (788)
Q Consensus 104 l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~ 136 (788)
+++..+. +..++...+....++...++++.++
T Consensus 69 l~~~~~~-~~~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 69 LAELKRL-WPAALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887654 4444555566666677777766554
No 87
>PRK03818 putative transporter; Validated
Probab=93.18 E-value=1.9 Score=50.69 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHH-HhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChh
Q 043324 24 VCGILVVSHLFHLI-FKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVP 102 (788)
Q Consensus 24 i~lil~~~~l~~~l-~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~ 102 (788)
+.+.+.++.+++.+ ++.+++- +.|-+++|+++|... . .+..-.| .....++.++|+.+|+|.+|++.-+.
T Consensus 11 l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~--~--~~~~~~~----~~~~~~~~~~gl~lFv~~vGl~~Gp~ 81 (552)
T PRK03818 11 LALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV--S--QFGLTLD----SDMLHFIQEFGLILFVYTIGIQVGPG 81 (552)
T ss_pred HHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc--c--ccCcccC----hHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 33344444444432 2223333 377788888887521 0 1111111 23345688999999999999999988
Q ss_pred HHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-HHHhcccHHHHHHHHHhc
Q 043324 103 FMK---RNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTI-IIIANSASPVVIRLAADL 169 (788)
Q Consensus 103 ~l~---~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el 169 (788)
.+. +.+.+...+++.-.+++.+++..+.+ +++. +. ....| ++=+.|++|.+....+..
T Consensus 82 f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~--~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 82 FFSSLRKSGLRLNLFAVLIVILGGLVTAILHK-LFGI------PL--PVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhCC------CH--HHHHHHhhccccccHHHHHHHHHH
Confidence 654 44445555555555556655554432 3233 22 23333 344668888887766543
No 88
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.15 E-value=0.76 Score=53.76 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHH
Q 043324 248 LILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVAL 327 (788)
Q Consensus 248 ~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~ 327 (788)
..++.+.+...+++.+++++.++-.++|+++... +..... +--.+.+..+++|......|+++|...+.. .+..+.
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~-~~~~~~-~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~ 80 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLA-GLLPEV-PLDREIVLFLFLPPLLFEAAMNTDLRELRE--NFRPIA 80 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhc-cccCCC-CCCHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHH
Confidence 3444555556778888888888888888888632 111110 000112345788999899999999998875 344444
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHH
Q 043324 328 VMVSLSIAGK-ILGTLLACYYLKIPLNIEAVILAFILNLKGHADL 371 (788)
Q Consensus 328 ~i~~~~~~~K-~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~l 371 (788)
.+.+...+.- .+.++...++.++|+. .++.+|.++++...+..
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~-~alllGails~TDpvav 124 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLA-LALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHhCCCCHHHH
Confidence 4333333332 3333333346799999 99999999988876553
No 89
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=93.03 E-value=16 Score=39.69 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHH
Q 043324 46 PVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIF 125 (788)
Q Consensus 46 ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l 125 (788)
+.-.+++|+.+|-..-+....... +... -.+.--.+++.+.|+=.=+++|.+++++..|+.-.+ +.+...-+++
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~-~~~~----~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii 93 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGK-LEFG----GVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhccc-ceeC----ceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 444567888888544331111000 0001 112234566777778788899999999877664333 3334444444
Q ss_pred H----HHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 126 G----AAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVVAF 201 (788)
Q Consensus 126 ~----~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~~~ 201 (788)
+ +++++++.+. . + ....|.++-.-+ |.++-++-=-++.+.+. ..++..-.+||++.+++++....+
T Consensus 94 ~P~lm~~la~~fl~~----~-p---ey~~GlILlglA-pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 94 GPLLMFALAWFFLPD----E-P---EYRAGLILLGLA-PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHHHHHHHhCC----C-H---HHHHHHHHHHhh-hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4 3334433322 1 1 233333332222 22222222223334444 456777789999999888766544
Q ss_pred h
Q 043324 202 T 202 (788)
Q Consensus 202 ~ 202 (788)
.
T Consensus 164 ~ 164 (342)
T COG0798 164 F 164 (342)
T ss_pred H
Confidence 3
No 90
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.91 E-value=0.84 Score=53.77 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=46.9
Q ss_pred HhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHH
Q 043324 38 FKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYG 117 (788)
Q Consensus 38 ~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~ 117 (788)
.+.+++-.+.|-+++|+++|..... ++ ..+.++|+++|+|.+|++.-+..++.-+|+.+...+.
T Consensus 30 i~~~~LG~~~gvLfvgl~~G~~g~~-i~---------------~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~ 93 (562)
T TIGR03802 30 FGSFQLGGVAGSLIVAVLIGQLGIQ-ID---------------PGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIIL 93 (562)
T ss_pred EeeeecchHHHHHHHHHHHHhcCCC-CC---------------hHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHH
Confidence 3445677788999999999974321 11 1266799999999999999999876655554445444
Q ss_pred HHH
Q 043324 118 GFM 120 (788)
Q Consensus 118 ~~~ 120 (788)
+++
T Consensus 94 a~~ 96 (562)
T TIGR03802 94 ALV 96 (562)
T ss_pred HHH
Confidence 443
No 91
>PRK04972 putative transporter; Provisional
Probab=92.88 E-value=0.67 Score=54.48 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=70.2
Q ss_pred HHHHHHHHHHH-HhccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 043324 27 ILVVSHLFHLI-FKPLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMK 105 (788)
Q Consensus 27 il~~~~l~~~l-~~~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~ 105 (788)
.+.++.+++.+ ++++++-...|-+++|+++|..... + | ..+.++|+.+|+|.+|++.-+..+.
T Consensus 20 ~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~-~-------~--------~~~~~~gl~lF~~~vG~~~Gp~F~~ 83 (558)
T PRK04972 20 VLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS-I-------N--------TDALNLGFMLFIFCVGVEAGPNFFS 83 (558)
T ss_pred HHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC-C-------C--------hHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 33444444433 4556677777999999999974321 1 1 1245799999999999999988654
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-HHHhcccHHHHHHHHHh
Q 043324 106 ---RNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTI-IIIANSASPVVIRLAAD 168 (788)
Q Consensus 106 ---~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 168 (788)
+.+.+...+++.-.+++.+++..++++ ++. +. ....| ++=+.|++|.+....+-
T Consensus 84 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~--~~~~G~~aGa~T~tp~l~~a~~~ 141 (558)
T PRK04972 84 IFFRDGKNYLMLALVMVGSALVIALGLGKL-FGW------DI--GLTAGMLAGSMTSTPVLVGAGDT 141 (558)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hCC------CH--HHHHHHhhccccCcHHHHHHHHH
Confidence 444455555555555555555554443 232 22 22223 33466788887776553
No 92
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.77 E-value=3.2 Score=48.98 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=73.8
Q ss_pred ccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHH---HhhhhhHHHHHH
Q 043324 40 PLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFM---KRNLHLVTTVAY 116 (788)
Q Consensus 40 ~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l---~~~~~~~~~i~~ 116 (788)
++.+-...|-+++|+++|- +++..+.-+..|+ ....++.++|+.+|++.+|++--++.+ ++.+.+...+|+
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~~p~----~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGNIPS----SASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcceecCH----HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3444556678888888875 3332221112332 234568899999999999999888754 555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH-HHHhcccHHHHHHHHHhc
Q 043324 117 GGFMACGIFGAAISWFIIRELTISYNKIAFAIVTI-IIIANSASPVVIRLAADL 169 (788)
Q Consensus 117 ~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el 169 (788)
.-.++|.+++..+++++++. +. ....| ++=+.|++|.+....+..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~------~~--~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKY------DP--ALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCC------CH--HHHHHHhhccCCCcHHHHHHHHhc
Confidence 66667777777777555443 22 33344 445778989887776654
No 93
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.94 E-value=4.7 Score=39.08 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhChh--hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchh-HHHHH
Q 043324 250 LVLLISVSMIIESSGLY--STVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTID-NVIVA 326 (788)
Q Consensus 250 l~~~l~~~~~~e~~G~~--~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~-~~~~~ 326 (788)
+.+....+++.+.+|+. .++|+.+++.++.-.+...-++-. ....+-.-+.=..+|.+++...+.+.. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~----~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPP----WLLALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCH----HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455566677788875 778888888777633211111111 122233334456789998877765422 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCc
Q 043324 327 LVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPN 379 (788)
Q Consensus 327 ~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~ 379 (788)
+...+..++.-.+..++..+..++++. +++ +...|-|.-++......++
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~-ta~---La~~PGGl~~m~~~A~~~g 128 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPL-TAF---LATSPGGASEMAALAAELG 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHH-HHH---HHhCCchHHHHHHHHHHhC
Confidence 555666667778888888999999998 876 3357888888777665443
No 94
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=91.34 E-value=1 Score=50.14 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=66.5
Q ss_pred HHHHhHHHHHHHhhhccccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH-HH-hhHHHHHHH
Q 043324 296 VHNFVLPSYFGFTGFQFNISSLSTID-NVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAF-IL-NLKGHADLV 372 (788)
Q Consensus 296 ~~~l~lplFFv~~G~~idl~~l~~~~-~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lgl-ll-~~kG~~~li 372 (788)
..++|+-.||..+|+..++..+.... .......+.........+.....+.+++.+.. -.+..|. .+ .-+| .+.+
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhG-TAaa 142 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHG-TAAA 142 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCcc-HHHH
Confidence 34567779999999999988775421 12222223333345566666666778888877 6665542 22 1223 2233
Q ss_pred HHhhcCcC-CCCCChhhHH--HHHHHHHHHHHhHHHHHHHHhchhh
Q 043324 373 VVDASPNS-EKWWGEDIRR--LLLSVIVLNTLMAGPVVSFIMRKQE 415 (788)
Q Consensus 373 ~~~~~~~~-~il~~~~~~~--~lv~~~lltt~i~~~lv~~l~~~~~ 415 (788)
......+. |.- +..... .-.+..+...+++.|+++|+.||.+
T Consensus 143 ~g~~fe~~~G~~-~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 143 FGPTFEELYGWE-GATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333333 443 333332 2233334556788999999887654
No 95
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=91.04 E-value=11 Score=42.44 Aligned_cols=164 Identities=7% Similarity=0.055 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhcc
Q 043324 22 LQVCGILVVSHLFHLIFKP--LGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEF 99 (788)
Q Consensus 22 l~i~lil~~~~l~~~l~~~--l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~ 99 (788)
..+.+...++..+...+++ +.+|..++-+++|+++.+.. ..... .+ . ..+..+.++.+.+-+++-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~~-~~-~----~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKKF-PW-V----AERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhCc-cc-c----chHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555566666666664 77999999999999998632 22211 01 1 123567789999888888888899
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHH----HHHHHHHHhcccHHHH-HH-HHHhcCcCC
Q 043324 100 DVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAF----AIVTIIIIANSASPVV-IR-LAADLKLDT 173 (788)
Q Consensus 100 d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~----~l~lg~~ls~Ts~~vv-~~-iL~el~ll~ 173 (788)
++..+....-..+++.+.+.+...+....+.+-+ +++ +... +-..|..+-.|+.++. .+ +-+++|-.+
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~---mg~---~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~ 368 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRL---MGK---DYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSH 368 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh---ccc---hHHHHHHhcccccccccchHHHHHHHHHHHhccCCCC
Confidence 9999999998888888888877765554333322 222 2222 2345556666655443 23 334445333
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 043324 174 SDVGRLAMSSSLINEMSCSLLFSLV 198 (788)
Q Consensus 174 s~~G~l~ls~a~i~D~~~~ill~l~ 198 (788)
.-.=-.=+-.+.+-|+...+++...
T Consensus 369 ~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 369 QAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred cceehhhhHHHHHHHHhhHHHHHHH
Confidence 3332233566777787776665544
No 96
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=90.53 E-value=27 Score=37.23 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhh
Q 043324 297 HNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDA 376 (788)
Q Consensus 297 ~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~ 376 (788)
..+++=.|++.++.-.|+..+... +..++..+...+...+..+..+++++.+.. + +.++.+-|..|-.+.-....
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~ta---P~~i~~gf~il~~h~~v~f~~~KlF~~dL~-~-i~~AslAniGG~~sAp~~A~ 349 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTA---PLIILFGFIILISHLAVSFAAGKLFRVDLE-E-ILLASLANIGGPTSAPAMAI 349 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H-HHHHHHhccCCccchhHHHh
Confidence 345666789999999998887652 222333334445567777888899987766 4 44455567778777777777
Q ss_pred cCcCCCC
Q 043324 377 SPNSEKW 383 (788)
Q Consensus 377 ~~~~~il 383 (788)
+++....
T Consensus 350 A~nr~lv 356 (384)
T COG5505 350 AKNRELV 356 (384)
T ss_pred hcCchhc
Confidence 7766555
No 97
>PRK03818 putative transporter; Validated
Probab=90.36 E-value=6.9 Score=46.07 Aligned_cols=108 Identities=9% Similarity=0.055 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHh----hhhhHHHHHHHHHHH
Q 043324 46 PVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKR----NLHLVTTVAYGGFMA 121 (788)
Q Consensus 46 ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~----~~~~~~~i~~~~~~i 121 (788)
.-|-+++|+++|- ++...+..+..|+ .....+.++|+.+|+..+|++--...+.. .+.+...+|..-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~~~p~----~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYWFMPP----SANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCceeecCH----HHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4578888888885 3333332223342 22456888999999999999888776543 356666677777777
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHH-HHHhcccHHHHHHHHH
Q 043324 122 CGIFGAAISWFIIRELTISYNKIAFAIVTI-IIIANSASPVVIRLAA 167 (788)
Q Consensus 122 p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~ 167 (788)
|.+++..+++++++. ++ ....| ++=+.|++|.+....+
T Consensus 477 ~~~~~~~~~~~~~~~------~~--~~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 477 PLLIVGILARMLAKM------NY--LTLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred HHHHHHHHHHHHHcC------CH--HHHHHHHhccCCCcHHHHHHhc
Confidence 888887777665554 22 23344 4567788888766543
No 98
>PRK04972 putative transporter; Provisional
Probab=89.82 E-value=3.3 Score=48.77 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=77.4
Q ss_pred cCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhH---HHhhhhhHHHHHHH
Q 043324 41 LGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPF---MKRNLHLVTTVAYG 117 (788)
Q Consensus 41 l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~---l~~~~~~~~~i~~~ 117 (788)
+++-.--|-+++|+++|- +++..+..+-.|+ ....++.++|+.+|+..+|+.--.+. +++.+.+...+|..
T Consensus 408 ~~LG~agG~L~~gl~~g~--~~~~~~~~~~~p~----~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~ 481 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGF--LRANHPTFGYIPQ----GALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI 481 (558)
T ss_pred eeccccHHHHHHHHHHHh--ccccCCCceeeCH----HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 344455678899999885 4444442223342 23456899999999999999877664 45556666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcC
Q 043324 118 GFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLK 170 (788)
Q Consensus 118 ~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 170 (788)
-.++|.+++..+++++++. ++. .+.-+++=+.|++|.+....+..+
T Consensus 482 ~t~~~~~~~~~~~~~~~k~------~~~-~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 482 VSLVPVVICFLFGAYVLRM------NRA-LLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHHHHHHHHHHHHcC------CHH-HHHHHHhCCCCCcHHHHHHHhhcC
Confidence 7778888888888766555 332 233335567788888877665543
No 99
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=89.10 E-value=1 Score=49.74 Aligned_cols=106 Identities=9% Similarity=0.062 Sum_probs=64.9
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD 513 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~ 513 (788)
.|||+++.+.++....++-+-.++...+..-+++++|+++..... .. . +. .....++++ +..+
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~------~~-~-~~------~~~~~eell---e~~~ 68 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD------PE-G-QD------ELAAAEELL---ERVE 68 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc------cc-h-hH------HHHHHHHHH---HHHH
Confidence 379999999998888877666666432123589999998743111 00 0 00 001122233 2222
Q ss_pred hhhc------CCceEEEEEEEee-----CCCChhHHHHHHHhhcCccEEEecCC
Q 043324 514 IFSS------ETKIFVRQIKAVS-----SFPTMYEDVCSQAEDLRVSLIFLPFH 556 (788)
Q Consensus 514 ~~~~------~~~v~v~~~~~vs-----~~~~m~~dI~~~A~~~~~~liilp~h 556 (788)
...+ ..+++++...... ...+.++.|++.|++.++|+|+|+=.
T Consensus 69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 2211 2467777665542 11478999999999999999999853
No 100
>COG2855 Predicted membrane protein [Function unknown]
Probab=88.92 E-value=39 Score=36.78 Aligned_cols=103 Identities=13% Similarity=0.057 Sum_probs=68.3
Q ss_pred HHhccCCChhHHHHHHHHhhchhhhccccc-ccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHH
Q 043324 37 IFKPLGQPGPVAQVLAGLVLGPTLLCRIYV-IERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVA 115 (788)
Q Consensus 37 l~~~l~~P~ii~~IlaGilLGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~ 115 (788)
....+++|..+--|+.|+++|. +...+. .. ....-.-..+-.+|++ +.|.++++.++...+.+.+.+-
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~--l~~~~~~~~-----~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~ 99 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGI--LPQIPAQTS-----AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLII 99 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhc--cccchhhhc-----cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHH
Confidence 3455789999999999999994 222222 11 1111112335667744 4588999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcc
Q 043324 116 YGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANS 157 (788)
Q Consensus 116 ~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 157 (788)
...+..++++++.++.++ +. +...++++|.-.|+.
T Consensus 100 ~~~l~~t~~~~~~lg~~l-gl------d~~~a~Lia~GssIC 134 (334)
T COG2855 100 AITLSSTFLFAYFLGKLL-GL------DKKLALLIAAGSSIC 134 (334)
T ss_pred HHHHHHHHHHHHHHHHHh-CC------CHHHHHHHHccchhh
Confidence 777777888777777743 54 556666666555543
No 101
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=88.38 E-value=12 Score=40.87 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCh--hHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhc
Q 043324 21 CLQVCGILVVSHLFHLIFKPLGQPG--PVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLE 98 (788)
Q Consensus 21 ll~i~lil~~~~l~~~l~~~l~~P~--ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle 98 (788)
..++.+++.++.+.+++++|+|+|. ++|-++++.++.-.. ..+. -+ +..... ++.+++=-.+|.+
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~--~~~~---~~-----P~~l~~---~aqv~iG~~iG~~ 220 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG--GPSF---SL-----PPWLVN---AAQVLIGASIGSR 220 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--CCCC---CC-----CHHHHH---HHHHHHHHHHHcc
Confidence 3445666677888899999999874 455555555544321 1111 11 122333 3444477899999
Q ss_pred cChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 99 FDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRE 136 (788)
Q Consensus 99 ~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~ 136 (788)
++.+.+++.+|. +..++...+.-+.++.+.++.+..+
T Consensus 221 f~~~~l~~~~~~-~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 221 FTRETLRELRRL-LPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887554 5555555555566666666665444
No 102
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=88.34 E-value=13 Score=40.58 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=77.8
Q ss_pred ccCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHH
Q 043324 40 PLGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGF 119 (788)
Q Consensus 40 ~l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~ 119 (788)
-++.|.+++.+ .|+++...... +| +...+..+.++....-+-||.+|+.++.+.+++..|........-.
T Consensus 179 ~~~nP~iia~i-~Gl~~~~~~i~-lP--------~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 179 LIKFPPLWAPL-LSVILSLVGFK-MP--------GLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHhCCChHHHH-HHHHHHHHhhc-Cc--------HHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 35788888754 55777653321 11 2234567779999999999999999999888776666555544444
Q ss_pred H-HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 043324 120 M-ACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSL 197 (788)
Q Consensus 120 ~-ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l 197 (788)
+ .|.+. ..+...+ +. + .......+.++...+++.+.++.+.--.+ .+.+-+...++-+++++.+.+
T Consensus 249 il~P~i~-~~~~~~~-~l------~-~~~~~~~vl~aa~P~a~~~~i~A~~y~~~---~~~aa~~v~~sT~ls~~tlp~ 315 (321)
T TIGR00946 249 LVQPAVM-AGISKLI-GL------R-GLELSVAILQAALPGGAVAAVLATEYEVD---VELASTAVTLSTVLSLISLPL 315 (321)
T ss_pred HHHHHHH-HHHHHHh-CC------C-hHHHHHHHHHHcCChhhHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 3 45443 3333322 32 1 12234445556656666666666543122 244445545555555444433
No 103
>COG2985 Predicted permease [General function prediction only]
Probab=87.11 E-value=3.4 Score=46.45 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhccChhH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH-HHhcccHH
Q 043324 85 FFARIFFMFLLGLEFDVPF---MKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTII-IIANSASP 160 (788)
Q Consensus 85 ~igl~lllF~~Gle~d~~~---l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~ 160 (788)
++|+++|.+.+|+|--+.. +|+.+++-..+++.- ++.+..+++.+..++ .+...+..|. +=+.||+|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~-----~~~~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF-----GIDLGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc-----CCCHHHhhhhhcccccCCc
Confidence 8999999999999998875 577777766555532 334444555554442 2233333332 23557777
Q ss_pred HHHH---HHHhcCc
Q 043324 161 VVIR---LAADLKL 171 (788)
Q Consensus 161 vv~~---iL~el~l 171 (788)
.+.. +|+|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 6654 5666554
No 104
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=86.57 E-value=27 Score=35.76 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=64.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHH
Q 043324 315 SSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLS 394 (788)
Q Consensus 315 ~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~ 394 (788)
+.+.. +|..+..-+++..+.-++..++.++++|.+.. .. ..+.+|....-+...+..+.|-+ ++-+-...++
T Consensus 84 ~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~---~~--~Sl~PkSvTTpiAm~vs~~iGGi-p~ltav~Vi~ 155 (230)
T COG1346 84 HLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE---LI--LSLLPKSVTTPIAMEVSESIGGI-PALTAVFVIL 155 (230)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HH--HHhcccccccHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 34443 67777777777778888888999999998865 33 34679988888888888888877 6655555566
Q ss_pred HHHHHHHhHHHHHHHH
Q 043324 395 VIVLNTLMAGPVVSFI 410 (788)
Q Consensus 395 ~~lltt~i~~~lv~~l 410 (788)
+-++...++|++.+++
T Consensus 156 tGi~Gavlg~~llk~~ 171 (230)
T COG1346 156 TGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6677777778877775
No 105
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=85.51 E-value=11 Score=42.87 Aligned_cols=121 Identities=21% Similarity=0.185 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCC--CchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHH
Q 043324 248 LILVLLISVSMIIESSGLYSTVHCFLVGMMFPRE--GKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIV 325 (788)
Q Consensus 248 ~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~--~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~ 325 (788)
+++.+...++.+++.+..+.+.-+.+.|++.... .+........-+ .+..+++|+-....|+++|...+.+ .|..
T Consensus 13 lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~e-l~~~l~l~ilLf~~g~~l~~~~l~~--~~~~ 89 (429)
T COG0025 13 LILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPE-LFLVLFLAILLFAGGLELDLRELRR--VWRS 89 (429)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChH-HHHHHHHHHHHHHhHhcCCHHHHHH--hHHH
Confidence 4445555566666666665555555555544310 011111110111 2236778887789999999998876 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCCchHHHHHHHHHHhhHHHHHHH
Q 043324 326 ALVMVSLSIAGKILGTLLACYYL--KIPLNIEAVILAFILNLKGHADLV 372 (788)
Q Consensus 326 ~~~i~~~~~~~K~~~~~l~~~~~--~~~~~~~a~~lglll~~kG~~~li 372 (788)
+..+.....+...+++....++. ++|+. .++.+|.++++-.-+.+.
T Consensus 90 I~~La~~~v~it~~~~g~~~~~l~~~i~~~-~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 90 ILVLALPLVLITALGIGLLAHWLLPGIPLA-AAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHH-HHHHHhHHhcCCCchhhH
Confidence 55555666666666666666666 89999 999999888877655543
No 106
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=84.74 E-value=6.6 Score=39.45 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHh
Q 043324 325 VALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVD 375 (788)
Q Consensus 325 ~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~ 375 (788)
..+.+-+..+++-+++.++.+++.++|++ |++.++..+..-..-+..+..
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~-~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLK-ESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHccCcHHHhHHHHHHh
Confidence 35566777788999999999999999999 999999988887776666544
No 107
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=84.72 E-value=38 Score=34.98 Aligned_cols=83 Identities=7% Similarity=-0.017 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHH
Q 043324 322 NVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTL 401 (788)
Q Consensus 322 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~ 401 (788)
.|..+..-+++..+.-+++++..++++|.+.. +-..|.+|....=+...+..+.|-. ..-.-...+++-++-.+
T Consensus 92 ~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~-----~~~Sl~pKSVTtPIAm~is~~iGG~-psLtA~~ViitGi~Gai 165 (232)
T PRK04288 92 YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA-----VMASMLPQAATTAIALPVSAGIGGI-KEITSFAVIFNAVIIYA 165 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH-----HHHHHhhHhhhHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHH
Confidence 56666666666777778888888999998755 3344689998887777787777766 55444455555566666
Q ss_pred hHHHHHHHH
Q 043324 402 MAGPVVSFI 410 (788)
Q Consensus 402 i~~~lv~~l 410 (788)
++|++.+++
T Consensus 166 ~g~~llk~~ 174 (232)
T PRK04288 166 LGAKFLKLF 174 (232)
T ss_pred HHHHHHHHc
Confidence 777777764
No 108
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=84.51 E-value=19 Score=33.50 Aligned_cols=144 Identities=18% Similarity=0.179 Sum_probs=76.8
Q ss_pred cEEEEEcc-CCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHH
Q 043324 608 QSVATLFF-GGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDV 686 (788)
Q Consensus 608 ~~i~v~f~-GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~ 686 (788)
.+|++.+- |.+--+.|++.|...+...+..++++.+.+........ . .. ..... .....+..+...++
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~----~--~~---~~~~~--~~~~~~~~~~~~~~ 74 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALV----S--VA---LADAP--IPLSEEELEEEAEE 74 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccccccccc----c--cc---cccch--hhhhHHHHHHHHHH
Confidence 57888888 88889999999999999999999988887532111000 0 00 00000 00000111233355
Q ss_pred HHHHHHHhccCCCceEEEEEec--CCh-HHHHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcC
Q 043324 687 YMDEFYKRYVSSGQIGYVEKNL--RDG-AETLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASM 763 (788)
Q Consensus 687 ~~~~~~~~~~~~~~v~y~E~~v--~~~-~~~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~ 763 (788)
.+++.+......+ +...+..+ .++ .+.+..... .++.||+++|.++. +.|.+ --||=+-+-++..
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~i~~~a~-~~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~ 142 (154)
T COG0589 75 LLAEAKALAEAAG-VPVVETEVVEGSPSAEEILELAE-EEDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH 142 (154)
T ss_pred HHHHHHHHHHHcC-CCeeEEEEecCCCcHHHHHHHHH-HhCCCEEEECCCCC---------ccccc-eeeehhHHHHHhc
Confidence 5555555433222 22122222 333 233333322 23699999999732 22222 3355555555544
Q ss_pred CCCCceeEEEEeec
Q 043324 764 DFDIKSSVLVIQQH 777 (788)
Q Consensus 764 d~~~~~SvLVvQq~ 777 (788)
++.+|||+...
T Consensus 143 ---~~~pVlvv~~~ 153 (154)
T COG0589 143 ---APCPVLVVRSE 153 (154)
T ss_pred ---CCCCEEEEccC
Confidence 67799998753
No 109
>TIGR00930 2a30 K-Cl cotransporter.
Probab=83.33 E-value=1.4e+02 Score=37.82 Aligned_cols=136 Identities=10% Similarity=0.070 Sum_probs=78.2
Q ss_pred CCCCCceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccc
Q 043324 428 LDPESELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVME 507 (788)
Q Consensus 428 ~~~~~elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 507 (788)
+..+-.-++|+...+|...+.+++++..+.+.+ . -..+.|+++.+.+. . ..+ .++..
T Consensus 570 h~knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~--g-l~i~~~v~~~~~~~-~----~~~--------------~~~~~- 626 (953)
T TIGR00930 570 HVKNWRPQCLVLTGPPVCRPALLDFASQFTKGK--G-LMICGSVIQGPRLE-C----VKE--------------AQAAE- 626 (953)
T ss_pred CccccCCeEEEEeCCCcCcHHHHHHHHHhccCC--c-EEEEEEEecCchhh-h----HHH--------------HHHHH-
Confidence 334566799999999999999999999997432 2 34556777654222 1 000 00001
Q ss_pred hhHHHHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhc-----CccEEEecCCCccccCCccccCchhhHHHHHHhhcc
Q 043324 508 INEAVDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDL-----RVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRH 582 (788)
Q Consensus 508 ~~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~-----~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~ 582 (788)
+..+.+-+.. .++.|..+.--+++.+++..+.+-- +.+.++++|...|+.+... . -..+-++.+..+ +
T Consensus 627 --~~~~~~~~~~--~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~-~-~~~y~~~i~~a~-~ 699 (953)
T TIGR00930 627 --AKIQTWLEKN--KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR-A-WETYIGIIHDAF-D 699 (953)
T ss_pred --HHHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch-h-HHHHHHHHHHHH-H
Confidence 1111121111 2333444433468999999988874 7899999999888754421 1 123444444433 4
Q ss_pred CCCceEEEecCCC
Q 043324 583 APCSVGILVDRGC 595 (788)
Q Consensus 583 apCsVgIlVdRg~ 595 (788)
+... +.+-|+.
T Consensus 700 ~~~~--v~i~r~~ 710 (953)
T TIGR00930 700 AHLA--VVVVRNS 710 (953)
T ss_pred cCCc--EEEEccc
Confidence 4454 4445653
No 110
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=81.76 E-value=9.5 Score=42.58 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=56.6
Q ss_pred HHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHH-HHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 269 VHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYF-GFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYY 347 (788)
Q Consensus 269 lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFF-v~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~ 347 (788)
+....+|.+..+.+-+..+-...+..++..+++|.+. ..++-..+...+.+ ++.+.+...+..+.-++..++..++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSRL 86 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455555544444555567778888999999984 44444343443333 3333433334444445556666777
Q ss_pred hCCCchHHHHH--HHHHHhhHHHHHHHHHhh
Q 043324 348 LKIPLNIEAVI--LAFILNLKGHADLVVVDA 376 (788)
Q Consensus 348 ~~~~~~~~a~~--lglll~~kG~~~li~~~~ 376 (788)
++.+.+ +... ++.....-|.+.+-+...
T Consensus 87 ~~~~~~-~~~~~~~~~~~~N~~~lglpi~~~ 116 (385)
T PF03547_consen 87 FRLPKE-WRGVFVLAASFGNTGFLGLPILQA 116 (385)
T ss_pred cCCCcc-cceEEEecccCCcchhhHHHHHHH
Confidence 777765 4432 233344555555555443
No 111
>COG0679 Predicted permeases [General function prediction only]
Probab=81.69 E-value=83 Score=34.12 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=77.2
Q ss_pred hhHHHHHHHHhhccCCC-chhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 266 YSTVHCFLVGMMFPREG-KTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLA 344 (788)
Q Consensus 266 ~~~lGaflaGL~l~~~~-~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~ 344 (788)
+|.+=|+++|+++...+ ++.. ..++..+...+.-.|+=.+..|+.++....... .+.........-.+...+..++.
T Consensus 168 nP~i~a~i~g~~~~~~~i~lP~-~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~-~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 168 NPLIIALILGLLLNLLGISLPA-PLDTAVDLLASAASPLALIALGLSLAFLKLKGS-KPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred CcHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhhhhHHHHHHhhhcchhhhccc-cchhHHHHHHHHHHHHHHHHHHH
Confidence 55566666666665211 2222 344555567889999999999999998555432 23333333333567778888888
Q ss_pred HHHhCCCchHHHHHHHHHH--hhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHH
Q 043324 345 CYYLKIPLNIEAVILAFIL--NLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVV 407 (788)
Q Consensus 345 ~~~~~~~~~~~a~~lglll--~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv 407 (788)
++.++++.. +. ....++ .|-+....+++.. .+.- .+..-+...++++++.+..|...
T Consensus 246 ~~~~~l~~~-~~-~v~vl~~a~P~A~~~~v~a~~---~~~~-~~laa~~i~ist~ls~~t~p~~~ 304 (311)
T COG0679 246 AKLLGLSGL-AL-QVLVLLSAMPTAVNAYVLARQ---YGGD-PRLAASTILLSTLLSLLTLPLLI 304 (311)
T ss_pred HHHcCCChH-HH-HHHHHHhhCcHHhHHHHHHHH---hCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 55 333333 4555555554443 4443 44444444445444444444433
No 112
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=81.17 E-value=24 Score=39.08 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHH
Q 043324 16 PVVSTCLQVCGILVVSHLFHLIFKP--LGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMF 93 (788)
Q Consensus 16 ~l~~~ll~i~lil~~~~l~~~l~~~--l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF 93 (788)
++.+.+.-+++.+.++..+..+++. +.+|..++-+++|+++-... ..... .. .+ .+..+.++++.+.+++=
T Consensus 219 ~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~-~~~~~-~~-v~----~~~v~~ig~vsL~lfla 291 (404)
T COG0786 219 PLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL-DLLKK-YR-VF----RRAVDVIGNVSLSLFLA 291 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH-HHhcc-cc-cc----HHHHHHHhhhHHHHHHH
Confidence 4444445555555666666666663 56999999999999987532 11111 11 11 34466789999888887
Q ss_pred HHhhccChhHHHhhhhhHHHHHHHHHHHHHH
Q 043324 94 LLGLEFDVPFMKRNLHLVTTVAYGGFMACGI 124 (788)
Q Consensus 94 ~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~ 124 (788)
.+=..+.+-++-..+-..+++-..+.++..+
T Consensus 292 mALmSlkLweL~~l~lpl~viL~vQ~i~m~l 322 (404)
T COG0786 292 MALMSLKLWELADLALPLLVILAVQTIVMAL 322 (404)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 7766777777776666655555555544433
No 113
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=80.89 E-value=19 Score=38.81 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 87 ARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFI 133 (788)
Q Consensus 87 gl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l 133 (788)
++.++.|..|..+|++.+.+.+...+.+++..+.+++.+++.+..++
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rll 243 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLV 243 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778899999999999999999999998888877777776665544
No 114
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.30 E-value=0.16 Score=56.69 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhH-HHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHH
Q 043324 251 VLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTR-TLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVM 329 (788)
Q Consensus 251 ~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~-~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i 329 (788)
+.++....+.+.++++..+|-.++|+++... .+.- +-.+..-....++.+++.....|.++|...+.. .+......
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~~ 82 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRR--NWRRALAL 82 (380)
T ss_dssp -------------------------------------------S-SSHHHHS--SSHHHHTTGGGG--------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccc--cccccccc
Confidence 3344444578899999999999999999853 2220 000133335677888888889999999999875 34444444
Q ss_pred HHHHHHHHHHH-HHHHHH---HhCCCchHHHHHHHHHHhhHH
Q 043324 330 VSLSIAGKILG-TLLACY---YLKIPLNIEAVILAFILNLKG 367 (788)
Q Consensus 330 ~~~~~~~K~~~-~~l~~~---~~~~~~~~~a~~lglll~~kG 367 (788)
.+..++.-++. ++.... ..++++. +++.+|..+++-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~l~~~~~~ts 123 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWA-EALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhH-HHhhhHHhhhccc
Confidence 44444444444 444443 4788999 9999998886554
No 115
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=78.29 E-value=47 Score=31.61 Aligned_cols=106 Identities=12% Similarity=-0.040 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhhchhhhcccccccccccCCChHHHHH-HHHHHHHHHHH
Q 043324 17 VVSTCLQVCGILVVSHLFHLIFKPLGQPG---PVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYR-FYAFFARIFFM 92 (788)
Q Consensus 17 l~~~ll~i~lil~~~~l~~~l~~~l~~P~---ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~-~l~~igl~lll 92 (788)
...++.|+++++.+..+...+.+-+++|- ++|.++- +.-..++.... +......+ ++.++.+.|+=
T Consensus 6 ~~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL---~l~L~~~~vk~-------~~v~~~a~~LL~~m~LfFVP 75 (141)
T PRK04125 6 VYSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLL---FVLLCTKVVKL-------EQVESLGTALTNNIGFLFVP 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH---HHHHHhCCcCH-------HHHHHHHHHHHHHHHHHHhh
Confidence 35678899999988888778877777653 2333221 11112333332 21222222 25566633333
Q ss_pred HHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043324 93 FLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWF 132 (788)
Q Consensus 93 F~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~ 132 (788)
=.+|+=..++.+++++...+..-+.+.++.+++...+..+
T Consensus 76 agVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 76 SGISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777777777665555555555555444433333
No 116
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=77.41 E-value=1.4e+02 Score=34.07 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 043324 159 SPVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLL 194 (788)
Q Consensus 159 ~~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~il 194 (788)
+|++..+.+.+|+.+.+.--.+++++.+.|..+.++
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 678888889988765444356888999999988764
No 117
>PRK10490 sensor protein KdpD; Provisional
Probab=77.13 E-value=9.1 Score=47.99 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=77.0
Q ss_pred CceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHH
Q 043324 432 SELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEA 511 (788)
Q Consensus 432 ~elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a 511 (788)
..-|||||+.+..+...+++-...++...+ -..+++|+.....+. . .. ...+++. +.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~--a~~~~l~V~~~~~~~-~----~~-------------~~~~~l~---~~ 305 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLG--SVWHAVYVETPRLHR-L----PE-------------KKRRAIL---SA 305 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcC--CCEEEEEEecCCcCc-C----CH-------------HHHHHHH---HH
Confidence 445899999999888888888777776544 356889975321111 0 00 0112333 44
Q ss_pred HHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCC-CceEEE
Q 043324 512 VDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAP-CSVGIL 590 (788)
Q Consensus 512 f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~ap-CsVgIl 590 (788)
++ .++..+..+... ..++.++.|.+.|++++++.|+||=+++.+. + ..+++.+++++++| -+|=|.
T Consensus 306 ~~-lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 306 LR-LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred HH-HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEE
Confidence 43 444333333322 2368999999999999999999997654321 1 01257889999997 555554
No 118
>COG2431 Predicted membrane protein [Function unknown]
Probab=77.01 E-value=53 Score=34.61 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccC---hh--HHHhhhhhHHHHHHHHH
Q 043324 45 GPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFD---VP--FMKRNLHLVTTVAYGGF 119 (788)
Q Consensus 45 ~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d---~~--~l~~~~~~~~~i~~~~~ 119 (788)
++.+..+.|+++|-..-...+. .+...+..+.+++|.+|.++. .. +.+- .|+.+..++..+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~~~-------------~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~L-nk~gl~l~~i~i 173 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFLNF-------------PENASEYLLYLLLFLIGIQLGNSGISLRQVLL-NKRGLILAFITL 173 (297)
T ss_pred HHHHHHHHHHHHHHHhcccccC-------------chhHHHHHHHHHHHHHHHHhccccchhhhHHh-ccchHHHHHHHH
Confidence 5667778888887532111111 233567888889999999887 22 2222 266677766655
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043324 120 MACGIFGAAISWFIIRE 136 (788)
Q Consensus 120 ~ip~~l~~~~~~~l~~~ 136 (788)
+-..+ |..++.++.+.
T Consensus 174 lssli-GG~iaa~~l~l 189 (297)
T COG2431 174 LSSLI-GGLIAAFLLDL 189 (297)
T ss_pred HHHHH-HHHHHHHHHhc
Confidence 54444 44444444454
No 119
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=76.80 E-value=3.8 Score=46.54 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=54.7
Q ss_pred hHHHHHHHhhcCccEEEec---CCCccccCCccccCchhhHHHHHHhhccCCCceEEEecCCCc-c---cccccCCCCcc
Q 043324 536 YEDVCSQAEDLRVSLIFLP---FHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDRGCL-E---FQRLLAPDSLQ 608 (788)
Q Consensus 536 ~~dI~~~A~~~~~~liilp---~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdRg~~-~---~~~~~~~~~~~ 608 (788)
.++||.+|+++++|+|++| ||...++...+ +..++.+-+.-+..-||..-++-|.+.. + +..+.-.+--.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L---~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNl 117 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTL---HRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNL 117 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHH---HHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCc
Confidence 3799999999999999999 67664433222 2345666667788889999999888742 1 11111111125
Q ss_pred EEEEEccC--CccH
Q 043324 609 SVATLFFG--GPDD 620 (788)
Q Consensus 609 ~i~v~f~G--G~DD 620 (788)
+|.+|.|+ |.+|
T Consensus 118 NIsIPVFsIHGNHD 131 (646)
T KOG2310|consen 118 NISIPVFSIHGNHD 131 (646)
T ss_pred ceeeeeEEeecCCC
Confidence 88888886 6555
No 120
>COG2985 Predicted permease [General function prediction only]
Probab=76.44 E-value=20 Score=40.55 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=71.4
Q ss_pred CChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhH---HHhhhhhHHHHHHHHH
Q 043324 43 QPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPF---MKRNLHLVTTVAYGGF 119 (788)
Q Consensus 43 ~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~---l~~~~~~~~~i~~~~~ 119 (788)
+-..-|.+++|++||- +|.+.+.-+..|+. ....+.++|+.+||=.+|++---+. +...+-.....|..-.
T Consensus 395 LG~aGGpLivaLiLG~--ig~iGpl~w~mP~~----An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit 468 (544)
T COG2985 395 LGNAGGPLIVALILGF--IGAIGPLTWFMPPG----ALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVT 468 (544)
T ss_pred ecccccHHHHHHHHHH--hcccCceEEEcChh----HHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHH
Confidence 3345678888888884 66666654555543 2445788998877777777654332 3344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcC
Q 043324 120 MACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLK 170 (788)
Q Consensus 120 ~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ 170 (788)
++|.+.++.++.++.+. +|.. ++-+++=+.|++|.++- ..|..
T Consensus 469 ~vp~i~~~llg~~v~km------n~~~-l~G~laGs~T~ppaLa~-and~~ 511 (544)
T COG2985 469 LVPVIIVFLLGRYVLKM------NWLL-LCGALAGSMTDPPALAF-ANDAA 511 (544)
T ss_pred HHHHHHHHHHHHHHHhc------cHHH-HhhHHhcCCCChHHHHH-Hhhcc
Confidence 67888888888887665 4432 44445567799886654 34443
No 121
>PRK10711 hypothetical protein; Provisional
Probab=75.99 E-value=70 Score=33.11 Aligned_cols=83 Identities=5% Similarity=-0.001 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHH
Q 043324 322 NVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTL 401 (788)
Q Consensus 322 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~ 401 (788)
+|..+..-+++..+.-++++++.++.+|.+.. +-..|.+|....=+...+..+.|-. .+-.-...+++-++-..
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~-----~~~Sl~pkSVTtPIAm~is~~iGG~-~sLta~~ViitGi~Ga~ 160 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPE-----IAASILPKSVTTPIAMAVGGSIGGI-PAISAVCVIFVGILGAV 160 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH-----HHHHHhhhhhhHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHH
Confidence 45555555666667777888888999998755 3344689998877777777777655 44444444445556666
Q ss_pred hHHHHHHHH
Q 043324 402 MAGPVVSFI 410 (788)
Q Consensus 402 i~~~lv~~l 410 (788)
++|++.+++
T Consensus 161 ~g~~llk~~ 169 (231)
T PRK10711 161 FGHTLLNAM 169 (231)
T ss_pred HHHHHHHHc
Confidence 677777764
No 122
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=73.35 E-value=35 Score=37.44 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=61.1
Q ss_pred HHHhcc-CCChhHHHHHHHHhhchhhhccccc-ccccccCCChHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhhh-hhH
Q 043324 36 LIFKPL-GQPGPVAQVLAGLVLGPTLLCRIYV-IERFFIKPNSAEYYRFYAFFARIFFMFLLGLE-FDVPFMKRNL-HLV 111 (788)
Q Consensus 36 ~l~~~l-~~P~ii~~IlaGilLGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle-~d~~~l~~~~-~~~ 111 (788)
.+++.+ ++|..+-.++.|+++-- +|.+++ .++ ......+++..-....+|+-+|+. .|++++.+.. ...
T Consensus 196 ~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~-----~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 196 GLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEE-----GAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 334443 68999999999999864 666665 211 112222233333444455557886 8999988876 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhc
Q 043324 112 TTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIAN 156 (788)
Q Consensus 112 ~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 156 (788)
+.+.+.+++.-.+.++.++.++ +++ +...++.-|.+++.
T Consensus 269 vviiv~~Vlg~ii~s~lvGKll-G~Y-----PiE~aItagLC~~~ 307 (347)
T TIGR00783 269 VVICLSVVVAMILGGAFLGKLM-GMY-----PVESAITAGLCNSG 307 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh-CCC-----hHHHHHHHhhhccC
Confidence 4443333333333444555544 543 45555666656654
No 123
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=72.81 E-value=1.4e+02 Score=31.87 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=23.7
Q ss_pred hcccHHHHHHHHHh--cCcCCCchhHHHHHHHHHHHHHHHHHHH
Q 043324 155 ANSASPVVIRLAAD--LKLDTSDVGRLAMSSSLINEMSCSLLFS 196 (788)
Q Consensus 155 s~Ts~~vv~~iL~e--l~ll~s~~G~l~ls~a~i~D~~~~ill~ 196 (788)
+...+.++.-+.+. .+....+.|..++-+=++|-....+..-
T Consensus 153 a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGid 196 (273)
T PF01889_consen 153 ATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGID 196 (273)
T ss_pred HHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhee
Confidence 33333344444443 3556667787777777776665544443
No 124
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=72.00 E-value=52 Score=33.03 Aligned_cols=106 Identities=18% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhcc---CCChhHHHHHHHHhhchhhhccccc-cc-----ccccCCChHHHHHHHHHHHHHHHHHH
Q 043324 24 VCGILVVSHLFHLIFKPL---GQPGPVAQVLAGLVLGPTLLCRIYV-IE-----RFFIKPNSAEYYRFYAFFARIFFMFL 94 (788)
Q Consensus 24 i~lil~~~~l~~~l~~~l---~~P~ii~~IlaGilLGP~~lg~i~~-~~-----~~f~~~~~~~~~~~l~~igl~lllF~ 94 (788)
+.++=+.-++.+++.||+ |++.----|+.|+++.-.+ |.... -+ .+|..-... --..+.+++ .-.
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG~kGlaDi~lfsGiglm-GGaMlRDfA----Iva 91 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGGEKGLADIAIFGGFGLM-GGAMLRDLA----IVA 91 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCCccccchhhhhcchhhh-hhHHHHHHH----HHH
Confidence 333334444556666665 5666666677788875321 11111 00 011110000 001133333 334
Q ss_pred HhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 95 LGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRE 136 (788)
Q Consensus 95 ~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~ 136 (788)
...|.|++++||.+....+--+.+.++||++|..+++.+ ++
T Consensus 92 TAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~af-GY 132 (254)
T TIGR00808 92 TAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAF-GY 132 (254)
T ss_pred HhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 667999999999999887777889999999999998875 54
No 125
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=71.74 E-value=21 Score=38.01 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCc-h--hHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhH
Q 043324 246 VLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGK-T--TRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDN 322 (788)
Q Consensus 246 ~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~-~--~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~ 322 (788)
...-+.++|+.+.+++.+.++|.+|=.++|.+.....| + ...+...+. ++=..+....+|+++.+..+-..+.
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LA----elGViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELA----ELGVILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHH----HhhHHHHHHhcchheeHHHHhhHHH
Confidence 34566788889999999999999999999999874433 2 123333333 3333455568999998877654344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHH
Q 043324 323 VIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADL 371 (788)
Q Consensus 323 ~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~l 371 (788)
|..-..+.-++ .-..-.+..++..|+++. ..+..|+.++.-..+-+
T Consensus 87 iAipgAl~qia--~at~lg~gL~~~lgws~~-~glvfGlaLS~aSTVvl 132 (408)
T COG4651 87 IAIPGALAQIA--LATLLGMGLSSLLGWSFG-TGIVFGLALSVASTVVL 132 (408)
T ss_pred HhcchHHHHHH--HHHHHHhHHHHHcCCCcc-cceeeeehhhhHHHHHH
Confidence 43211111111 111122344677899999 99999998887766544
No 126
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=71.41 E-value=1.3e+02 Score=31.05 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHH
Q 043324 214 IFLTASLILVNCYLVIWFNTKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLT 293 (788)
Q Consensus 214 ~l~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~ 293 (788)
+...+..-++.-.+.+|+.||. +...+--++........+--..|.++ .+..+-++.+..-+.
T Consensus 4 ~~~~l~lTl~~y~~~~~l~~r~------~~~~lnPvl~~~~~ii~~L~~~~i~Y-----------~~Y~~g~~~l~~lLg 66 (226)
T TIGR00659 4 IIVSLFLTLLVFFGAKKLYQRF------KRPYLNPLLLTPLVLVGILLLVGIPY-----------ESYMLGGGVINDLLG 66 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc------CCccccHHHHHHHHHHHHHHHhCCCH-----------HHHHHhhHHHHHhhH
Q ss_pred HHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHH
Q 043324 294 YAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVV 373 (788)
Q Consensus 294 ~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~ 373 (788)
.-.-.+-+|+| =+.+.+.. +|..+...+++..+.-+.++++.++.+|.+.. +...+.+|....-+.
T Consensus 67 PAtVALAvPLY-------~~~~~lk~--~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~-----i~~Sl~pkSvTtpiA 132 (226)
T TIGR00659 67 PAVVALAIPLY-------KQLPQIKK--YWKEIILNVAVGSVIAIISGTLLALLLGLGPE-----IIASLLPKSVTTPIA 132 (226)
T ss_pred HHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH-----HHHHhhhHHhhHHHH
Q ss_pred HhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHH
Q 043324 374 VDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFI 410 (788)
Q Consensus 374 ~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l 410 (788)
..+..+.|-. .+-.-...+++-++-..+++++.+++
T Consensus 133 m~vs~~iGG~-~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 133 MHVSEMIGGI-PAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHhCCh-HHHHHHHHHHHHHHHHHHHHHHHHHc
No 127
>PRK01658 holin-like protein; Validated
Probab=71.04 E-value=89 Score=28.98 Aligned_cols=100 Identities=14% Similarity=-0.014 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhhchhhhcccccccccccCCChHHHHH-HHHHHHHHHHHH
Q 043324 18 VSTCLQVCGILVVSHLFHLIFKPLGQPG---PVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYR-FYAFFARIFFMF 93 (788)
Q Consensus 18 ~~~ll~i~lil~~~~l~~~l~~~l~~P~---ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~-~l~~igl~lllF 93 (788)
..++.|+++++.+..+...+.+-+++|- ++|.++ ++.-..++.++. +..+...+ .+.++++.|.==
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlL---L~~~L~~~~ik~-------~~v~~~a~~Ll~~m~llFVPa 73 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFL---LLLLLSFKILKL-------KWIELGAETLLAELPLFFIPS 73 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHHhCCcCH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 4577888888888777777777666553 333322 111112333332 11122122 256666333333
Q ss_pred HHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043324 94 LLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGA 127 (788)
Q Consensus 94 ~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~ 127 (788)
.+|+=-..+.+++++......-+.+.++.++...
T Consensus 74 ~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg 107 (122)
T PRK01658 74 AVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTG 107 (122)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677667777777776655555555555544443
No 128
>PRK09903 putative transporter YfdV; Provisional
Probab=70.68 E-value=76 Score=34.39 Aligned_cols=109 Identities=8% Similarity=-0.022 Sum_probs=61.5
Q ss_pred cCCChhHHHHHHHHhhchhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHH-
Q 043324 41 LGQPGPVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGF- 119 (788)
Q Consensus 41 l~~P~ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~- 119 (788)
++-|.+++.+ +|+++.- +|..-| +...+..+.++....-+-||.+|..++...++.. ++.+...+.-.
T Consensus 171 ~~nP~iia~~-~gl~~~l--~~i~lP-------~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPV-LATILVL--VGVKIP-------AAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHH-HHHHHHH--cCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 4568888765 4555532 332222 3345667789999999999999999877665443 33333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhc
Q 043324 120 MACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADL 169 (788)
Q Consensus 120 ~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 169 (788)
+.|++. ....+ +.+. + ....-...+++.+.+++.+.++.+.
T Consensus 240 ~~P~i~-~~~~~-~~~l------~-~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 240 LMPLAL-LLVGM-ACHL------N-SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHH-HHHHH-HcCC------C-cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 346543 22222 2232 1 2234455666666667777777664
No 129
>COG3329 Predicted permease [General function prediction only]
Probab=69.28 E-value=92 Score=33.34 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHhhccCCCchhHHH--HHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 043324 265 LYSTVHCFLVGMMFPREGKTTRTL--LHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTL 342 (788)
Q Consensus 265 ~~~~lGaflaGL~l~~~~~~~~~l--~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~ 342 (788)
++|.+.-|+.|++++-. ++++ -+.+-....-.++---=..-|+.+.-+.+.. ....+..-+.+.++.-+++.+
T Consensus 16 ~sP~llFf~~Gmlia~~---ksdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~f 90 (372)
T COG3329 16 LSPTLLFFILGMLIAAF---KSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAYF 90 (372)
T ss_pred ccchHHHHHHHHHHHHH---hccccCchHHHHHHHHHHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHHH
Confidence 47888889999888732 1111 1111111111111111112344444444443 334444555566677778888
Q ss_pred HHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhH
Q 043324 343 LACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIR 389 (788)
Q Consensus 343 l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~ 389 (788)
+..++.|++.. |+..++-.-.....+.++.+..-++..-+ ..+-|
T Consensus 91 ~l~kl~~vdtv-daaA~ag~yGsvS~~Tfaaa~t~Lee~gi-ayeay 135 (372)
T COG3329 91 LLRKLPKVDTV-DAAATAGTYGSVSAVTFAAAVTFLEESGI-AYEAY 135 (372)
T ss_pred HHHHccccchH-HHHHHHhhccchhHHHHHHHHHHHHHcCc-cHHHH
Confidence 88899999999 99999987777777777766655554333 44444
No 130
>PRK01821 hypothetical protein; Provisional
Probab=67.84 E-value=1.1e+02 Score=28.92 Aligned_cols=98 Identities=7% Similarity=-0.060 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhhchhhhcccccccccccCCChHHHHH-HHHHHHHHHHHH
Q 043324 18 VSTCLQVCGILVVSHLFHLIFKPLGQPG---PVAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEYYR-FYAFFARIFFMF 93 (788)
Q Consensus 18 ~~~ll~i~lil~~~~l~~~l~~~l~~P~---ii~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~~~-~l~~igl~lllF 93 (788)
..++.|+++++.+..+...+.+-+++|- ++|.++ ++.-..++.++. +..+...+ .+.++.+.|+==
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlL---Lf~~L~~~~vk~-------~~v~~~a~~LL~~m~LfFVPa 78 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLI---LFVLLALQILPA-------KWVKPGCSLLIRYMALLFVPI 78 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH---HHHHHHhCCcCH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 4677888888888777777777777553 222221 111112233332 11222122 255555333333
Q ss_pred HHhhccChhHHHhhhhhHHHHHHHHHHHHHHH
Q 043324 94 LLGLEFDVPFMKRNLHLVTTVAYGGFMACGIF 125 (788)
Q Consensus 94 ~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l 125 (788)
.+|+=-..+.+++++......-+.+.++.++.
T Consensus 79 ~VGim~~~~ll~~~~~~il~~ivvST~lvl~v 110 (133)
T PRK01821 79 GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLV 110 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666677777666554444444444443
No 131
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=67.15 E-value=69 Score=37.86 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=49.8
Q ss_pred HHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCchHHHHHHHHHHhh
Q 043324 295 AVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYY---------LKIPLNIEAVILAFILNL 365 (788)
Q Consensus 295 ~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~---------~~~~~~~~a~~lglll~~ 365 (788)
.+..+++|.-..-.|..+|...+.. ++..++.+.++.++.-.+.+-...++ .++++. +++.+|.++++
T Consensus 67 lf~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~-~allfGAiiSa 143 (559)
T TIGR00840 67 YFFLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLL-DNLLFGSLISA 143 (559)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHH-HHHHHhHHhcC
Confidence 4556788888889999999988875 45444444444443333333222221 256999 99999999998
Q ss_pred HHHHHHHH
Q 043324 366 KGHADLVV 373 (788)
Q Consensus 366 kG~~~li~ 373 (788)
..-+...-
T Consensus 144 TDPVAVla 151 (559)
T TIGR00840 144 VDPVAVLA 151 (559)
T ss_pred CchHHHHH
Confidence 87766543
No 132
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=66.94 E-value=20 Score=39.22 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=70.7
Q ss_pred HHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHH
Q 043324 295 AVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVV 374 (788)
Q Consensus 295 ~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~ 374 (788)
+-++++=|+-|..+|..+|++-+-.. .+. .++.-..+-++-+ .+++.+..+|++.+ |+-.+|.+=..-|-.++.+.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllan-P~~-~ll~gaaAQ~GiF-~t~~~A~~lGF~~~-eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILAR-PWA-SITVALFAEMGTF-ATLVIGYYCGLTPG-EAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhC-hHH-HHHHHHHHHhhHH-HHHHHHHHcCCCHH-HhhHHhhcccCCccHHHHHH
Confidence 34678888889999999999876431 121 1111122333333 34566677899999 99999998888888887776
Q ss_pred hhcCcCCCCCChhhHHHHHHH----HHHHHHhHHHHHHHHhchhhhhh
Q 043324 375 DASPNSEKWWGEDIRRLLLSV----IVLNTLMAGPVVSFIMRKQEVQL 418 (788)
Q Consensus 375 ~~~~~~~il~~~~~~~~lv~~----~lltt~i~~~lv~~l~~~~~~~~ 418 (788)
+.- .++.+..+.++ .-+.=++.||++|.+..++.|..
T Consensus 178 ~kL-------Ap~Llg~IaVAAYsYMaLVPiiqPpimklLttkkER~I 218 (399)
T TIGR03136 178 LIL-------AKDLFVPISIIAYLYLSLTYAGYPYLIKLLVPKKYRGL 218 (399)
T ss_pred Hhh-------hhHhHHHHHHHHHHHHHHHhcccchHHHhhcCHHHHcc
Confidence 532 23333222221 12334568999999876655433
No 133
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=65.44 E-value=1.4e+02 Score=32.83 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHhChh--hHHH-HHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccch-h
Q 043324 246 VLLILVLLISVSMIIESSGLY--STVH-CFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTI-D 321 (788)
Q Consensus 246 ~~~il~~~l~~~~~~e~~G~~--~~lG-aflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~-~ 321 (788)
....+.+.+..+++.+..|+. .++| +.++|.+..-.+ ..-.+-..+ ..+-.-+-=+.+|.++..+.+... .
T Consensus 11 w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~-~~l~~P~~l----~~~~q~ilG~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 11 WFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRG-LTLPLPRGL----FKAGQVILGIMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc-ccccCChHH----HHHHHHHHHHHHhhhcCHHHHHHHHH
Confidence 344555666777888888774 4577 666666554221 110111111 111122334566777776655432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcC
Q 043324 322 NVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASP 378 (788)
Q Consensus 322 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~ 378 (788)
.|....++++..+..-.+..++..|+.+.|.. +++ +...|.|.-++.....-+
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~-Ta~---~gs~PGgas~m~~iA~d~ 138 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGN-TAF---LGSSPGGASAMVSIAQDY 138 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhh---HhcCCchHHHHHHHHHHh
Confidence 57777777778888888888898898888877 665 456788887777665433
No 134
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=64.23 E-value=1.2e+02 Score=28.42 Aligned_cols=110 Identities=16% Similarity=0.027 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChh---HHHHHHHHhhchhhhcccccccccccCCChHHH-HHHHHHHHHHHHH
Q 043324 17 VVSTCLQVCGILVVSHLFHLIFKPLGQPGP---VAQVLAGLVLGPTLLCRIYVIERFFIKPNSAEY-YRFYAFFARIFFM 92 (788)
Q Consensus 17 l~~~ll~i~lil~~~~l~~~l~~~l~~P~i---i~~IlaGilLGP~~lg~i~~~~~~f~~~~~~~~-~~~l~~igl~lll 92 (788)
...++.|+++++.+..+..++.+-+++|-. +|.++ ++.-..++.++. +..++. ...+.++++.|.=
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvL---LfllL~~~iv~l-------~wv~~~a~~Ll~~m~llFVP 73 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVL---LFLLLALKIVKL-------EWVERGATFLLRNMALLFVP 73 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH---HHHHHHhCCccH-------HHHHHHHHHHHHHHHHHHhc
Confidence 457889999999998888888887777643 33222 222222343433 111221 2236666633332
Q ss_pred HHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 93 FLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRE 136 (788)
Q Consensus 93 F~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~ 136 (788)
=.+|+=-..+.++..+.+.+...+.+.++.+.....+...+.++
T Consensus 74 a~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~ 117 (128)
T COG1380 74 AGVGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLIRW 117 (128)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23666556777888887777776666666665555455444443
No 135
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=63.78 E-value=1.8e+02 Score=29.82 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHH
Q 043324 322 NVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTL 401 (788)
Q Consensus 322 ~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~ 401 (788)
+|..++..+.+..+.-+..+++.++++|.+.. . ...+.+|....-+...+..+.|-. ..-.-...+++-++-..
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~---~--~~Sl~pkSVTtpiAi~is~~iGG~-~sLta~~VvitGi~Ga~ 149 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE---I--ILSLAPKSVTTPIAIEISEQIGGI-PSLTAVFVVITGILGAV 149 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH---H--HHHHHHHHhhHHHHHHHHHHhCCh-HHHHHHHHHHHhhHHHH
Confidence 56666666666667777888888999998755 3 334678987777777777666654 43333444444455566
Q ss_pred hHHHHHHHH
Q 043324 402 MAGPVVSFI 410 (788)
Q Consensus 402 i~~~lv~~l 410 (788)
++|++.+++
T Consensus 150 ~g~~llk~~ 158 (215)
T PF04172_consen 150 LGPPLLKLL 158 (215)
T ss_pred hHHHHHhHc
Confidence 667777663
No 136
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=63.71 E-value=2.2e+02 Score=30.83 Aligned_cols=133 Identities=11% Similarity=0.089 Sum_probs=72.2
Q ss_pred hhHHHHHHHHhhccCCC-chhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 266 YSTVHCFLVGMMFPREG-KTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLA 344 (788)
Q Consensus 266 ~~~lGaflaGL~l~~~~-~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~ 344 (788)
+|.+=|.++|+++.-.+ +.... .++.-+.+.+...|+=...+|+.++...... .+.......++.++.-.+.++..
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~-l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGL-ILKSISILSGATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666655211 11223 3333445778899999999999998766643 34445555556666666666777
Q ss_pred HHHhCCCchHHHHHHHHHH--hhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHH
Q 043324 345 CYYLKIPLNIEAVILAFIL--NLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVS 408 (788)
Q Consensus 345 ~~~~~~~~~~~a~~lglll--~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~ 408 (788)
...++.+.. .. ....++ .|-+....++ +.+.|. +++..+..+....+.++++-|+.-
T Consensus 259 ~~~~~l~~~-~~-~~~vl~aa~P~a~~~~i~---A~~y~~--~~~~aa~~v~~sT~ls~~tlp~~~ 317 (321)
T TIGR00946 259 SKLIGLRGL-EL-SVAILQAALPGGAVAAVL---ATEYEV--DVELASTAVTLSTVLSLISLPLFI 317 (321)
T ss_pred HHHhCCChH-HH-HHHHHHHcCChhhHHHHH---HHHhCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778887654 32 222322 2444444333 334443 444444444444444444444443
No 137
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=62.62 E-value=1.4e+02 Score=33.65 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=63.7
Q ss_pred HhccCCChhHHHHHHHHhhchhhhccccc-ccccccCCChHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhhhhhHHHHH
Q 043324 38 FKPLGQPGPVAQVLAGLVLGPTLLCRIYV-IERFFIKPNSAEYYRFYAFFARIFFMFLLGLE-FDVPFMKRNLHLVTTVA 115 (788)
Q Consensus 38 ~~~l~~P~ii~~IlaGilLGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle-~d~~~l~~~~~~~~~i~ 115 (788)
.+.+++|..+..|+.=+++- .+|.+|+ .+ +...+..+++..-...-+|+-+|+. +|++++.+.-.....+-
T Consensus 266 ~~~i~ih~~a~mIi~~~i~K--~~~lvP~~~e-----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~ 338 (414)
T PF03390_consen 266 SKLIGIHAYAWMIILVAIVK--AFGLVPESLE-----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVI 338 (414)
T ss_pred HHhcCCcHHHHHHHHHHHHH--HhCcCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHH
Confidence 33459999999888877775 4666665 22 1123445556666666789999998 99999987765444443
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHhc
Q 043324 116 YGGFMACGIFG-AAISWFIIRELTISYNKIAFAIVTIIIIAN 156 (788)
Q Consensus 116 ~~~~~ip~~l~-~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 156 (788)
+...++...++ +.+++++ +++ +...++.-|.+++.
T Consensus 339 ~~~~Vl~~~~~a~~vG~l~-g~Y-----PvEsAItaGLC~an 374 (414)
T PF03390_consen 339 VLATVLGAVIGAFLVGKLV-GFY-----PVESAITAGLCMAN 374 (414)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCC-----hHHHHHHhhhcccC
Confidence 33333333333 3334433 442 44556666656554
No 138
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=61.96 E-value=23 Score=34.24 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=52.8
Q ss_pred hHHHHHHHHhhccCCCc---hhHHHHHHHHHHHHHHhHHHHHHHhhhcccccc---ccchhHHHHHHHHHHHHHHHHHHH
Q 043324 267 STVHCFLVGMMFPREGK---TTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISS---LSTIDNVIVALVMVSLSIAGKILG 340 (788)
Q Consensus 267 ~~lGaflaGL~l~~~~~---~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~---l~~~~~~~~~~~i~~~~~~~K~~~ 340 (788)
..-|++++|+++.+-.+ ..-.+-+.....++++.+-+|...+|++.-... +.....+....+..++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 34577888888775432 222333445567888999999999999986543 332111222333334444444566
Q ss_pred HHHHHHHhCCCch
Q 043324 341 TLLACYYLKIPLN 353 (788)
Q Consensus 341 ~~l~~~~~~~~~~ 353 (788)
.++..+++|+++.
T Consensus 103 ~~~~~~~~~~~~~ 115 (154)
T TIGR01625 103 AVALIKLLRINYA 115 (154)
T ss_pred HHHHHHHhCCCHH
Confidence 6666778898865
No 139
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=60.67 E-value=1.1e+02 Score=34.13 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=56.3
Q ss_pred HHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHh---hHHHH
Q 043324 294 YAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIP-LNIEAVILAFILN---LKGHA 369 (788)
Q Consensus 294 ~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~-~~~~a~~lglll~---~kG~~ 369 (788)
+.+.+.++|+-....=++.|++.+.. .. ...+..+++..++-.+++.+..+.++.. -. |...+.-.+. ..|..
T Consensus 54 ~~v~~~~vPlai~LlLl~~Dlr~i~~-~g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~-~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 54 DFVWTYLVPLAIPLLLLSADLRRILR-LG-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGP-EGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHhcccCchh
Confidence 45666777776666668899988764 22 3345566666777777777777777654 34 4444433232 33655
Q ss_pred HHHHHhhcCcCCCCCChhhHHHHHHH
Q 043324 370 DLVVVDASPNSEKWWGEDIRRLLLSV 395 (788)
Q Consensus 370 ~li~~~~~~~~~il~~~~~~~~lv~~ 395 (788)
-++....+++ . +++.+...+.+
T Consensus 131 N~~Av~~al~---~-~~~~~~a~~aa 152 (378)
T PF05684_consen 131 NFVAVAEALG---V-SDSLFAAALAA 152 (378)
T ss_pred HHHHHHHHHC---C-CHHHHHHHHHH
Confidence 5555554443 2 56666555444
No 140
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=60.53 E-value=18 Score=39.00 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=71.0
Q ss_pred HHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHh
Q 043324 296 VHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVD 375 (788)
Q Consensus 296 ~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~ 375 (788)
-++++=|+-|.-+|..+|++-+-.. .+. .++-..+-++ ...++..+..+|++.+ |+..+|.+=..-|-.++.+.+
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~-eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPK-EAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHH-HhhHhhhcccCCCcHHHHHHH
Confidence 3578888889999999999876431 222 2222222233 2345666778899999 999999988888888877665
Q ss_pred hcCcCCCCCChhhHHHHHHH----HHHHHHhHHHHHHHHhchhhhhh
Q 043324 376 ASPNSEKWWGEDIRRLLLSV----IVLNTLMAGPVVSFIMRKQEVQL 418 (788)
Q Consensus 376 ~~~~~~il~~~~~~~~lv~~----~lltt~i~~~lv~~l~~~~~~~~ 418 (788)
.- .++.+..+.++ .-+.=++.||++|.+..++.|..
T Consensus 142 ~L-------Ap~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I 181 (360)
T PF03977_consen 142 KL-------APHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKI 181 (360)
T ss_pred hh-------hHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhc
Confidence 32 33333322222 12335568999999876655433
No 141
>PRK10490 sensor protein KdpD; Provisional
Probab=58.42 E-value=65 Score=40.49 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=36.4
Q ss_pred ccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 607 LQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 607 ~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
..||+|..-|+|..+-.++.|+|||+.-++.++++++..
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~ 288 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVET 288 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 368999999999999999999999999999999999975
No 142
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=58.02 E-value=3e+02 Score=30.49 Aligned_cols=88 Identities=7% Similarity=0.015 Sum_probs=51.6
Q ss_pred hhHHHHHHHHhhccCCCchhH----HHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 043324 266 YSTVHCFLVGMMFPREGKTTR----TLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGT 341 (788)
Q Consensus 266 ~~~lGaflaGL~l~~~~~~~~----~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~ 341 (788)
+|.+=+.++|+++.--++... ....+.-..+.+...|+=.+..|+.+..........+......+++.++.-.+.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 455555555555553222222 3444544567788899999999998875443321123333444666666667777
Q ss_pred HHHHHHhCCCch
Q 043324 342 LLACYYLKIPLN 353 (788)
Q Consensus 342 ~l~~~~~~~~~~ 353 (788)
+...+.++++..
T Consensus 324 ~~~~~~~~l~~~ 335 (385)
T PF03547_consen 324 IGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHCCCHH
Confidence 777777776544
No 143
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=57.30 E-value=69 Score=36.11 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=64.9
Q ss_pred HHHHHHHhChhhHHHHHHHHhhccCCCchhHHH-HHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHH
Q 043324 256 VSMIIESSGLYSTVHCFLVGMMFPREGKTTRTL-LHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSI 334 (788)
Q Consensus 256 ~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l-~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~ 334 (788)
++-++..+|....+=-...|++...++-.+-+. --.+.+.+..+.+.+-..-.|+++++..+... .|+.+.+..+..+
T Consensus 22 ~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a-~~palsLATlGVl 100 (574)
T COG3263 22 SSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVA-AGPALSLATLGVL 100 (574)
T ss_pred HHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHH-hhhhHHHHHHHHH
Confidence 444555566655555555566666433110000 02333455566666666678999998877642 3444444444444
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHhhH
Q 043324 335 AGKILGTLLACYYLKIPLNIEAVILAFILNLK 366 (788)
Q Consensus 335 ~~K~~~~~l~~~~~~~~~~~~a~~lglll~~k 366 (788)
+.-.+....+.+.++.+|- |++.+|.+....
T Consensus 101 ~Ts~Ltg~aA~~ll~l~wl-e~~LiGAiVgST 131 (574)
T COG3263 101 ITSGLTGVAAAYLLNLDWL-EGLLIGAIVGST 131 (574)
T ss_pred HHHHHHHHHHHHHhccHHH-HHHHHHHhhccc
Confidence 4455556677888999999 999999876544
No 144
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=56.76 E-value=1.1e+02 Score=37.55 Aligned_cols=87 Identities=8% Similarity=0.030 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHH-
Q 043324 82 FYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASP- 160 (788)
Q Consensus 82 ~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~- 160 (788)
....+.+-++....|++.|+..+.+ +.............-++.+.+.+. +++. ++..++.+|.+++.=..-
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl-~~k~------p~~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSL-YCKL------PLRDSLALGLLMSTKGLVE 381 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HhcC------chhHHHHHHHHHHhhhHHH
Confidence 3455677778888999999999988 222222222222223333333443 3344 677788888887764421
Q ss_pred -HHHHHHHhcCcCCCch
Q 043324 161 -VVIRLAADLKLDTSDV 176 (788)
Q Consensus 161 -vv~~iL~el~ll~s~~ 176 (788)
++...-.|.|..+++.
T Consensus 382 l~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 382 LIVLNTGLDRKILSDEG 398 (769)
T ss_pred HHHHHHHhhcCCcccch
Confidence 2233334555444443
No 145
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=56.53 E-value=68 Score=31.66 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=31.7
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
+|+|-+.||+|.-..|.+...+.++.+.+++++++-.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh 37 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDH 37 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 5789999999999999999999999999999999964
No 146
>COG0679 Predicted permeases [General function prediction only]
Probab=55.92 E-value=2.3e+02 Score=30.71 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=60.7
Q ss_pred hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 267 STVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACY 346 (788)
Q Consensus 267 ~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~ 346 (788)
+++.-...|....+.+....+-.+-+.+++..+.+|.-+...=.+.+.+... .+.......+..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655555555566788899999999877666666655442 2444444444444555555556666
Q ss_pred HhCCCchHHHH--HHHHHHhhHHHHHHHH
Q 043324 347 YLKIPLNIEAV--ILAFILNLKGHADLVV 373 (788)
Q Consensus 347 ~~~~~~~~~a~--~lglll~~kG~~~li~ 373 (788)
..+.+.+ +.. ..+...+.-|-+++-+
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~N~g~lg~pi 115 (311)
T COG0679 88 LFKLDKR-ETVIFALASAFPNIGFLGLPV 115 (311)
T ss_pred Hhccchh-hHHHHHHHHHhcccchhhHHH
Confidence 6776666 553 3333344445554333
No 147
>PRK12342 hypothetical protein; Provisional
Probab=55.91 E-value=25 Score=36.95 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=25.0
Q ss_pred CCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 616 GGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 616 GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
=+|.|+-|++.|.|+.+ .+.++|++.+=+
T Consensus 33 iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp 61 (254)
T PRK12342 33 ISQFDLNAIEAASQLAT-DGDEIAALTVGG 61 (254)
T ss_pred CChhhHHHHHHHHHHhh-cCCEEEEEEeCC
Confidence 37999999999999995 578999999854
No 148
>PRK10537 voltage-gated potassium channel; Provisional
Probab=54.56 E-value=3.1e+02 Score=30.84 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.7
Q ss_pred ceEEEEEEeCCCCch
Q 043324 433 ELRMICCVYKPRNAS 447 (788)
Q Consensus 433 elriLvcv~~~~~~~ 447 (788)
+.|+++|++++-+..
T Consensus 240 k~HvII~G~g~lg~~ 254 (393)
T PRK10537 240 KDHFIICGHSPLAIN 254 (393)
T ss_pred CCeEEEECCChHHHH
Confidence 579999999998754
No 149
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=54.17 E-value=64 Score=34.03 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=25.4
Q ss_pred CccHHHHHHHHHHHhhCCc-eEEEEEEccc
Q 043324 617 GPDDREAIACSKRLAMHHH-LNLTVIRFLP 645 (788)
Q Consensus 617 G~DDreAL~~a~rma~~~~-v~ltv~r~~~ 645 (788)
.|.|+-|++.|.|+.++.+ .++|++.+=+
T Consensus 35 N~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp 64 (256)
T PRK03359 35 SQYDLNAIEAACQLKQQAAEAQVTALSVGG 64 (256)
T ss_pred ChhhHHHHHHHHHHhhhcCCCEEEEEEECC
Confidence 6899999999999999754 8999999854
No 150
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=53.23 E-value=2.8e+02 Score=28.65 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 91 FMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFI 133 (788)
Q Consensus 91 llF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l 133 (788)
.-|.+=+-=+++.+||+++..+...+.|..+.++.+..++.++
T Consensus 73 VAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~ 115 (230)
T COG1346 73 VALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF 115 (230)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466666667888999988876666666666555555555443
No 151
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=52.93 E-value=3e+02 Score=30.09 Aligned_cols=97 Identities=10% Similarity=0.001 Sum_probs=51.3
Q ss_pred Hhhhccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHH---hhHHHHHHHHHhhcCcCC
Q 043324 307 FTGFQFNISSLST-IDNVIVALVMVSLSIAGKILGTLLACYYL-KIPLNIEAVILAFIL---NLKGHADLVVVDASPNSE 381 (788)
Q Consensus 307 ~~G~~idl~~l~~-~~~~~~~~~i~~~~~~~K~~~~~l~~~~~-~~~~~~~a~~lglll---~~kG~~~li~~~~~~~~~ 381 (788)
..|++++++++.+ ...+....+..+.-++...+..+..++.+ +.+ ..+.+|+++ +|-|..+.+...++. |
T Consensus 55 ~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~---p~l~~GliLv~~~Pgg~~S~v~T~lAk--G 129 (328)
T TIGR00832 55 PPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL---FEYIAGLILLGLARCIAMVFVWNQLAK--G 129 (328)
T ss_pred HhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHhcchHHHHHHHHHHcC--C
Confidence 3446666555543 12345555556666667777777777654 544 447777654 566665555555543 2
Q ss_pred CCCChhhHHHHHHHHHHHHHhHHHHHHHH
Q 043324 382 KWWGEDIRRLLLSVIVLNTLMAGPVVSFI 410 (788)
Q Consensus 382 il~~~~~~~~lv~~~lltt~i~~~lv~~l 410 (788)
-. +-...+..+..++..+++|++...+
T Consensus 130 nv--alsv~lt~~stLl~~~~~P~l~~ll 156 (328)
T TIGR00832 130 DP--EYTLVLVAVNSLFQVFLYAPLAWLL 156 (328)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1122233344444455556665544
No 152
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=52.75 E-value=48 Score=32.08 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHHhhCCceEEEEEEcc
Q 043324 618 PDDREAIACSKRLAMHHHLNLTVIRFL 644 (788)
Q Consensus 618 ~DDreAL~~a~rma~~~~v~ltv~r~~ 644 (788)
+.|+|+|+.|+++++..+.+++++-+=
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 779999999999999999998888763
No 153
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=50.74 E-value=3.7e+02 Score=29.41 Aligned_cols=253 Identities=14% Similarity=0.075 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhchhhhccccc--ccccccCCChHHHHHH--HHHHHHHHHHHHHhhcc
Q 043324 24 VCGILVVSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYV--IERFFIKPNSAEYYRF--YAFFARIFFMFLLGLEF 99 (788)
Q Consensus 24 i~lil~~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~--~~~~f~~~~~~~~~~~--l~~igl~lllF~~Gle~ 99 (788)
+..+.+-..+++.-.||=--|.+.-.|-.|+++.+.-+..... ... -.......++.. -.++.=.++.+-+|--+
T Consensus 5 ~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~-~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmt 83 (360)
T PF03977_consen 5 IVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGG-GEIGGLQPIYYFGISNGLFPPLIFMGIGAMT 83 (360)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhccccccc-CCCChHHHHHHHhhhcchhhHHHHHHHhHHH
Confidence 3444444455566667767888888888898887533221111 000 000111112211 12233344556689999
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHH
Q 043324 100 DVPFMKRNLHLVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRL 179 (788)
Q Consensus 100 d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l 179 (788)
|+.-+..+.|..+.-+..++-+ ...+..+.. .++ +..++..+|++=..=.+..++-. .++...-+|-+
T Consensus 84 DFgpllanP~~~llGaaAQ~Gi--f~t~~~A~~-lGf------~~~eAAsIgIIGgADGPtsIf~s---~~LAp~LlgpI 151 (360)
T PF03977_consen 84 DFGPLLANPKTLLLGAAAQFGI--FATFLGAIL-LGF------TPKEAASIGIIGGADGPTSIFVS---SKLAPHLLGPI 151 (360)
T ss_pred hhHHHHhCHHHHHHHHHHHHhH--HHHHHHHHH-hCC------CHHHhhHhhhcccCCCcHHHHHH---HhhhHHHHHHH
Confidence 9999999888744333333321 112222222 244 44555555555444322222111 11111111211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccccccc-hhHHHHHHHH
Q 043324 180 AMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFNTKS------RNQKFIN-NSQVLLILVL 252 (788)
Q Consensus 180 ~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~~~~------~~~~~~~-e~~~~~il~~ 252 (788)
++++ -.+....-.+-+|+++.+..+. ++.++++ ..-+.+-+..
T Consensus 152 aVaA------------------------------YsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv 201 (360)
T PF03977_consen 152 AVAA------------------------------YSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVV 201 (360)
T ss_pred HHHH------------------------------HHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHH
Confidence 1110 0112223344455555432211 1223332 2234444444
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhH
Q 043324 253 LISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDN 322 (788)
Q Consensus 253 ~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~ 322 (788)
..+++.+. =.-.+.+|.+.+|-.+.+ ....+++.+..+....++.--+.=..+|...+-..+-+.++
T Consensus 202 ~~~~~ll~--P~a~pLig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~t 268 (360)
T PF03977_consen 202 TILVGLLL--PSAAPLIGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQT 268 (360)
T ss_pred HHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHH
Confidence 44444432 234689999999999984 44434444444433333333334457787777666554333
No 154
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=49.93 E-value=3e+02 Score=31.34 Aligned_cols=32 Identities=13% Similarity=-0.194 Sum_probs=17.8
Q ss_pred ChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043324 100 DVPFMKRNLHLVTTVAYGGFMACGIFGAAISW 131 (788)
Q Consensus 100 d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~ 131 (788)
|.+.+.|.+.+.+..-+....+..++|..++.
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~ 97 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVN 97 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777666655544444444455544444
No 155
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=48.24 E-value=4.2e+02 Score=29.35 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHH
Q 043324 246 VLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNV 323 (788)
Q Consensus 246 ~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~ 323 (788)
+.+-+.+..+++.+.- .-.+.+|.+.+|-.+.+ ... +++.+..+....+..--+.=..+|.+.+-..+-+.++.
T Consensus 233 ilFpivv~i~~~ll~P--~a~pLig~Lm~GNllrE-sGv-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 233 FVFTIVAAMLLCLLLP--VASPLILSFFLGVAIKE-AQI-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred hHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHH-hCc-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 4444444444444321 33689999999999985 444 55555554444444433445677888876666554433
No 156
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=48.16 E-value=3.9e+02 Score=29.74 Aligned_cols=109 Identities=20% Similarity=0.222 Sum_probs=58.7
Q ss_pred HHHHhccCCChhHHHH-HHHHhhchhhhccccc-ccccccCCChHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhhhhhH
Q 043324 35 HLIFKPLGQPGPVAQV-LAGLVLGPTLLCRIYV-IERFFIKPNSAEYYRFYAFFARIFFMFLLGLE-FDVPFMKRNLHLV 111 (788)
Q Consensus 35 ~~l~~~l~~P~ii~~I-laGilLGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle-~d~~~l~~~~~~~ 111 (788)
+.+-|.+++|.-++++ +.-.++. ..+..++ .+ +....+.++++.=-.-.+|+-+|+- +|++++-+.....
T Consensus 281 ~il~kf~~~P~~va~MIil~a~lk--~~nlvp~~i~-----~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~ 353 (438)
T COG3493 281 GILGKFIGLPGPVAFMIILVAILK--AANLVPKEIE-----EGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQ 353 (438)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHH--HhCcCCHHHH-----HHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchh
Confidence 4444556799766333 3333332 2333443 11 1112344555555555689999997 9999988776555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHhc
Q 043324 112 TTVAYGGFMACGIFG-AAISWFIIRELTISYNKIAFAIVTIIIIAN 156 (788)
Q Consensus 112 ~~i~~~~~~ip~~l~-~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 156 (788)
-++-..++.+..+.+ +..++++ +++ +...++.-|++++.
T Consensus 354 ~vii~~~vVl~~i~~~~f~grl~-~~Y-----PVEaAI~aglC~a~ 393 (438)
T COG3493 354 NVIIALSVVLGAILGGAFVGRLM-GFY-----PVEAAITAGLCMAN 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCC-----chHHHHHHhHHhcC
Confidence 555455554444433 3334433 442 44555655677665
No 157
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=48.07 E-value=91 Score=33.50 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=41.6
Q ss_pred HHHHHHHhhchhhhccccc-ccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHH
Q 043324 48 AQVLAGLVLGPTLLCRIYV-IERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIF 125 (788)
Q Consensus 48 ~~IlaGilLGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l 125 (788)
-.++.|+++|+ +++ +++++.+.. .+-..|+-|..|-.+|++.+.+.+-....+|+...+++...
T Consensus 176 lPlliG~ilGN-----LD~~~r~fl~~~~---------~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 176 LPFLVGFALGN-----LDPELRDFFSKAV---------QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHhc-----CCHHHHHHhccCC---------CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 34567888776 444 555554431 12334477999999999999888877777776555444433
No 158
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=47.25 E-value=2.6e+02 Score=30.45 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=69.6
Q ss_pred HHhHHHHHHHhhhccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH---hhHHHHHHHH
Q 043324 298 NFVLPSYFGFTGFQFNISSLST-IDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFIL---NLKGHADLVV 373 (788)
Q Consensus 298 ~l~lplFFv~~G~~idl~~l~~-~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll---~~kG~~~li~ 373 (788)
..++.+.|...|+++...++.. ..+|...++.++..++.=.+.++..++.+++| ..+..|+++ +|-|..+.+.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~---~~l~~Gl~ll~~~Pggv~S~~~ 117 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP---PELAVGLLLLGCCPGGVASNAM 117 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHhHHheeeCCCchhHHHH
Confidence 4555667778899888766542 23577777777788888888888888888855 557888765 5667777555
Q ss_pred HhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHh
Q 043324 374 VDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIM 411 (788)
Q Consensus 374 ~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~ 411 (788)
...+. |-. .-......++.+++.+++|.++..+.
T Consensus 118 t~lAk--GnV--alsV~~tsvStll~~f~tPllv~l~~ 151 (319)
T COG0385 118 TYLAK--GNV--ALSVCSTSVSTLLGPFLTPLLVGLLA 151 (319)
T ss_pred HHHhc--CcH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55543 221 12233444555666666666666643
No 159
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=46.19 E-value=22 Score=30.08 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=25.9
Q ss_pred EEEEccCCccHHHHHHHHHHHhhCCceEEEEEEc
Q 043324 610 VATLFFGGPDDREAIACSKRLAMHHHLNLTVIRF 643 (788)
Q Consensus 610 i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~ 643 (788)
|++++-||+|+-.++.++.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 4788999999999999999987 33555565555
No 160
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=45.86 E-value=2.1e+02 Score=31.04 Aligned_cols=92 Identities=15% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 268 TVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLST-IDNVIVALVMVSLSIAGKILGTLLACY 346 (788)
Q Consensus 268 ~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~-~~~~~~~~~i~~~~~~~K~~~~~l~~~ 346 (788)
++.+.++|...|.-+..+..+. .|. ...+.+.+-|...|++++...+.. ...|...+......++.=.+..+...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~-~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEY-VIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhh-hHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888885443322221 122 223446666778999999887754 235655555555555555555555555
Q ss_pred HhCCCchHHHHHHHHHH
Q 043324 347 YLKIPLNIEAVILAFIL 363 (788)
Q Consensus 347 ~~~~~~~~~a~~lglll 363 (788)
..+.... +.+..|+..
T Consensus 84 l~~~~~~-~~l~~Gl~~ 99 (313)
T PF13593_consen 84 LFPAFLP-PELALGLLI 99 (313)
T ss_pred HhhccCC-HHHHHHHHH
Confidence 5543344 557777644
No 161
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=43.85 E-value=67 Score=34.62 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=41.7
Q ss_pred HHHHHHHhhchhhhccccc-ccccccCCChHHHHHHHHHHHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHH
Q 043324 48 AQVLAGLVLGPTLLCRIYV-IERFFIKPNSAEYYRFYAFFARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGI 124 (788)
Q Consensus 48 ~~IlaGilLGP~~lg~i~~-~~~~f~~~~~~~~~~~l~~igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~ 124 (788)
-.++.|+++|+ .++ ++++|.+.. .+-+.|+-|..|-.+|+..+.+.+-....+|+..++++..
T Consensus 176 lP~iiG~iLGN-----LD~~~r~fl~~~~---------~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~ 239 (314)
T PF03812_consen 176 LPIIIGMILGN-----LDPDFRKFLAPGV---------PILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGI 239 (314)
T ss_pred HHHHHHHHHhc-----CCHHHHHHHhcCC---------CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhH
Confidence 34567888776 344 555554432 2233446699999999999999888777777665544433
No 162
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=43.66 E-value=43 Score=36.68 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCchHHHHHHHHHHhhHHHHHH
Q 043324 297 HNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYY-----LKIPLNIEAVILAFILNLKGHADL 371 (788)
Q Consensus 297 ~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~-----~~~~~~~~a~~lglll~~kG~~~l 371 (788)
++++=|+-|.-+|..+|++-+-. -+...++-..+-++-+.....+..+ .|++.+ |+-.+|.+=..-|-.++
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLla---nP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~-eAAsIgIIGGADGPTsI 208 (433)
T PRK15475 133 SGVAPLVIFMGVGAMTDFGPLLA---NPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLP-QAAAIGIIGGADGPTAI 208 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhh---CHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChh-hchheeeeccCCCchHH
Q ss_pred HHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHhchhhhhhh-ccccccccCCC
Q 043324 372 VVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIMRKQEVQLT-HNRTSIECLDP 430 (788)
Q Consensus 372 i~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~~~~~~~~~-~~~~~i~~~~~ 430 (788)
.+.+.--.. ++ .+-....--.|+++ =++.||++|.+..+++|..+ ++.|++.+...
T Consensus 209 fvsskLAP~-Ll-g~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15475 209 YLSGKLAPE-LL-GAIAVAAYSYMALV-PLIQPPIMKALTTETERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhHhhhhhH-hH-HHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCCCCccch
No 163
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.52 E-value=45 Score=36.29 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccCCCceEEEEEec---CChHHHHHHHHhhcC-----cccEEEEecCCCC
Q 043324 685 DVYMDEFYKRYVSSGQIGYVEKNL---RDGAETLQALRDIGD-----MYSLFIVGKGRRG 736 (788)
Q Consensus 685 ~~~~~~~~~~~~~~~~v~y~E~~v---~~~~~~~~~i~~~~~-----~~dL~iVGr~~~~ 736 (788)
.++++..+.++.. -++.+-...| ....+++++|+.... +||++|++||+|.
T Consensus 29 ~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 29 QDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3566666665443 3466777777 446789999997752 5999999999885
No 164
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=43.30 E-value=44 Score=36.64 Aligned_cols=127 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCchHHHHHHHHHHhhHHHHHH
Q 043324 297 HNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYY-----LKIPLNIEAVILAFILNLKGHADL 371 (788)
Q Consensus 297 ~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~-----~~~~~~~~a~~lglll~~kG~~~l 371 (788)
++++=|+-|..+|..+|++-+-. -+...++-..+-++-+.....+..+ .|++.+ |+-.+|.+=..-|-.++
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLla---nP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~-eAAsIgIIGGADGPTsI 208 (433)
T PRK15477 133 SGVAPLVIFMGVGAMTDFGPLLA---NPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLP-QAAAIGIIGGADGPTAI 208 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhh---CHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChh-hchheeeeccCCCchHH
Q ss_pred HHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHhchhhhhhh-ccccccccCCC
Q 043324 372 VVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIMRKQEVQLT-HNRTSIECLDP 430 (788)
Q Consensus 372 i~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~~~~~~~~~-~~~~~i~~~~~ 430 (788)
.+.+.--.. ++ .+-....--.|+++ =++.||++|.+..+++|..+ ++.|++.+...
T Consensus 209 fvsskLAP~-Ll-g~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15477 209 YLSGKLAPE-LL-GAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhHhhhhhH-hH-HHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCCCCccch
No 165
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=43.28 E-value=44 Score=36.63 Aligned_cols=127 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCchHHHHHHHHHHhhHHHHHH
Q 043324 297 HNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYY-----LKIPLNIEAVILAFILNLKGHADL 371 (788)
Q Consensus 297 ~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~-----~~~~~~~~a~~lglll~~kG~~~l 371 (788)
++++=|+-|.-+|..+|++-+-. -+...++-..+-++-+.....+..+ .|++.+ |+-.+|.+=..-|-.++
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLla---nP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~-eAAsIgIIGGADGPTsI 208 (433)
T PRK15476 133 SGVAPLVIFMGVGAMTDFGPLLA---NPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLP-QAAAIGIIGGADGPTAI 208 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhh---CHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChh-hchheeeeccCCCchHH
Q ss_pred HHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHhchhhhhhh-ccccccccCCC
Q 043324 372 VVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIMRKQEVQLT-HNRTSIECLDP 430 (788)
Q Consensus 372 i~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~~~~~~~~~-~~~~~i~~~~~ 430 (788)
.+.+.--.. ++ .+-....--.|+++ =++.||+.|.+..+++|..+ ++.|++.+...
T Consensus 209 fvsskLAP~-Ll-g~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15476 209 YLSGKLAPE-LL-GAIAVAAYSYMALV-PLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred HhHhhhhhH-hH-HHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccCCCCCCCCccch
No 166
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=42.99 E-value=95 Score=37.80 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=72.1
Q ss_pred CCceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhH
Q 043324 431 ESELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINE 510 (788)
Q Consensus 431 ~~elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 510 (788)
...-||++|+.+..+-..+++-+..++.....|. +++|+..-.... . +. ...+++. .
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~--~av~v~~~~~~~-~----~~-------------~~~~~l~---~ 302 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLHAKW--TAVYVETPELHR-L----SE-------------KEARRLH---E 302 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhCCCe--EEEEEecccccc-c----cH-------------HHHHHHH---H
Confidence 3456999999988888888887777766555444 777765332111 0 00 0012222 3
Q ss_pred HHHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCC
Q 043324 511 AVDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPC 585 (788)
Q Consensus 511 af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apC 585 (788)
.++--++.+. . ..+..+ .+..+.|.+.|++.+++-|++|=+++++-... ..+.+.+++++++|-
T Consensus 303 ~~~Lae~lGa-e--~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~------~~~~l~~~L~~~~~~ 366 (890)
T COG2205 303 NLRLAEELGA-E--IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRL------FKGSLADRLAREAPG 366 (890)
T ss_pred HHHHHHHhCC-e--EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHH------hcccHHHHHHhcCCC
Confidence 3332222222 1 113334 68999999999999999999998765321100 114567888888763
No 167
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=42.46 E-value=2.3e+02 Score=27.83 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHHhhccCCC---chhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccch--hHHHHHHHHHHHHHHHHH
Q 043324 264 GLYSTVHCFLVGMMFPREG---KTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTI--DNVIVALVMVSLSIAGKI 338 (788)
Q Consensus 264 G~~~~lGaflaGL~l~~~~---~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~--~~~~~~~~i~~~~~~~K~ 338 (788)
.+-..-|+++.|+++.+-. |.. +.......++++.+-+|...+|++.-...+... ..+...+ +-++.++.-.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~-~~~~i~~~~~ 98 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLL-LGVIITLVPL 98 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence 3344557777777777532 111 234455567889999999999999865433221 1233333 3333334445
Q ss_pred HHHHHHHH-HhCCCchHHHHHHHHH
Q 043324 339 LGTLLACY-YLKIPLNIEAVILAFI 362 (788)
Q Consensus 339 ~~~~l~~~-~~~~~~~~~a~~lgll 362 (788)
+.++..++ ++|++.- ...|.+
T Consensus 99 ~~~~~~~~~~~~l~~~---~~~G~~ 120 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPG---IAAGIL 120 (169)
T ss_pred HHHHHHHHHHcCCCHH---HHHHHH
Confidence 55566666 8888855 444443
No 168
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=40.84 E-value=33 Score=29.01 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=36.1
Q ss_pred ChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCce
Q 043324 534 TMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSV 587 (788)
Q Consensus 534 ~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsV 587 (788)
.+++.+.+.|++.+++.|+.|.|..+..+...... ....++.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-----~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-----ANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-----hhhhhcccccCCce
Confidence 78999999999999999999998765443332110 23467788888874
No 169
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=40.74 E-value=29 Score=34.34 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=32.3
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
||++.|.||.|.--++.++.+.+++.+..++++++-.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5889999999999999999999887777888888853
No 170
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=40.06 E-value=2.1e+02 Score=32.44 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=52.8
Q ss_pred cEEEEEccCCccHHHHHHHHHHHh-hCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHH
Q 043324 608 QSVATLFFGGPDDREAIACSKRLA-MHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDV 686 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma-~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~ 686 (788)
.+|||+|.||-|---...++.+.+ .|+.+.|-=+-|-. ++.. . +.+ -+++++--.
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n--~e~~-~------------~~~---------~PDRktgr~ 306 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGN--PEGS-K------------EQN---------VPDRKTGRR 306 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccC--CCcc-c------------ccC---------CccHHHHHH
Confidence 589999999999999999998887 44455544344422 1110 0 000 257888889
Q ss_pred HHHHHHHhccCCCceEEEEEecCC
Q 043324 687 YMDEFYKRYVSSGQIGYVEKNLRD 710 (788)
Q Consensus 687 ~~~~~~~~~~~~~~v~y~E~~v~~ 710 (788)
-++|++..+.. ....++|.-|.-
T Consensus 307 g~~eL~s~~P~-R~~nlV~vnV~~ 329 (520)
T KOG0573|consen 307 GLEELQSLYPK-RSWNLVEVNVTY 329 (520)
T ss_pred HHHHHHHhCCc-ceEEEEeccCCH
Confidence 99999987764 467788876654
No 171
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=38.09 E-value=67 Score=34.91 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=31.9
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCce-EEEEEEcc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHL-NLTVIRFL 644 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v-~ltv~r~~ 644 (788)
-+|||-|.||+|.-..|.++...|+..+- .+.|+++-
T Consensus 28 ~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 28 PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 59999999999999999999999876655 78888874
No 172
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=37.41 E-value=4.6e+02 Score=26.71 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHhcccHHHHHHHHHhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 043324 129 ISWFIIRELTISYNKIAFAIVTIIIIANSASPVVIRLAADLKLDTSDVGRLAMSSSLINEMSCSLLFSLVV 199 (788)
Q Consensus 129 ~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~G~l~ls~a~i~D~~~~ill~l~~ 199 (788)
++|+..++++++. .....-++|-..|+|+ ++..+-++.|. +.+..+...+..++.....++=..+..
T Consensus 9 ~gYia~r~~G~r~-Gl~ltg~~GGlvSSTA--~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~R~l~iv 75 (211)
T PF13194_consen 9 AGYIAVRLLGPRR-GLLLTGLLGGLVSSTA--TTVSLARRSRE-NPELSRLLAAGILLASAVMFVRVLLIV 75 (211)
T ss_pred HHHHHHHHHcccc-hHHHHHHHHHHHHHHH--HHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454445443321 3344556666777666 44444454443 334556666666666665554333333
No 173
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=36.49 E-value=3.9e+02 Score=25.50 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=17.8
Q ss_pred HHHHHHHhh--hccccccccchhHHHHHHHHHHHHHHHHHHH
Q 043324 301 LPSYFGFTG--FQFNISSLSTIDNVIVALVMVSLSIAGKILG 340 (788)
Q Consensus 301 lplFFv~~G--~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~ 340 (788)
+|+||+=.| .-..++.+.+ .|+..++.+++..+.=++.
T Consensus 69 m~LfFVPagVGim~~~~ll~~--~~~~Il~~ivvSTllvl~v 108 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQ--YPVQIIGVIIVATILLLAC 108 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 678887444 4334444443 3443344444444333333
No 174
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=35.56 E-value=1.3e+02 Score=32.49 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=29.6
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFL 644 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~ 644 (788)
.++++.|.||+|+--.|.+|++.-......+.++++-
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iD 64 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVD 64 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEe
Confidence 3789999999999999999988755435667777774
No 175
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=34.32 E-value=2.2e+02 Score=27.74 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=31.3
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
+|++-+.||.|.--++.++.+...+-+..++++++-.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5789999999999999999998876567788888843
No 176
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=33.40 E-value=5e+02 Score=25.85 Aligned_cols=129 Identities=12% Similarity=0.242 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHH--HhChhhHHHHHHHHhhccCCCchhHHHHHHHH
Q 043324 216 LTASLILVNCYLVIWFNTKSRNQKFINNSQVLLILVLLISVSMIIE--SSGLYSTVHCFLVGMMFPREGKTTRTLLHKLT 293 (788)
Q Consensus 216 ~~~~~~~v~r~~~~~l~~~~~~~~~~~e~~~~~il~~~l~~~~~~e--~~G~~~~lGaflaGL~l~~~~~~~~~l~ek~~ 293 (788)
...+..++..+..-.+..|.++. ...++..+...+......+ ..-...+++++++=++... +.+++.-...+-
T Consensus 36 ~~~i~ali~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~-g~y~~~~~~~ia 110 (186)
T PF09605_consen 36 MPAIAALICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKK-GGYKSKKRNTIA 110 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHH
Confidence 34455566666666677776542 2222222222222111111 2333556777777777753 343322111111
Q ss_pred H-----HHHHHhHHHHHHHhhhcccc----------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043324 294 Y-----AVHNFVLPSYFGFTGFQFNI----------SSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLK 349 (788)
Q Consensus 294 ~-----~~~~l~lplFFv~~G~~idl----------~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~ 349 (788)
. ...+-++|++|..-...-+. ..+.+..+.+...++++..+++=++|+++..+..|
T Consensus 111 y~vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 111 YAVFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12267788887654443110 11111112334555666777778888888877765
No 177
>PRK09903 putative transporter YfdV; Provisional
Probab=30.13 E-value=7.2e+02 Score=26.74 Aligned_cols=113 Identities=9% Similarity=0.015 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH--hhH
Q 043324 289 LHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFIL--NLK 366 (788)
Q Consensus 289 ~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll--~~k 366 (788)
.++.-+...+-..|+=...+|+++....+.. .+. .....++..+.-.+..+.....++.+.. .. ....++ .|-
T Consensus 196 i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~--~~~-~~~~~~~Kli~~P~i~~~~~~~~~l~~~-~~-~v~vl~aa~P~ 270 (314)
T PRK09903 196 WDPTFNLIAKANSGVAVFAAGLTLAAHKFEF--SAE-IAYNTFLKLILMPLALLLVGMACHLNSE-HL-QMMVLAGALPP 270 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cHH-HHHHHHHHHHHHHHHHHHHHHHcCCCcH-HH-HHHHHHHcccH
Confidence 3444446778889999999999886654432 122 1222333444445555666666777644 32 333333 344
Q ss_pred HHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHHh
Q 043324 367 GHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFIM 411 (788)
Q Consensus 367 G~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l~ 411 (788)
+....+++. +.|. +++.-+..++...+.++++-|+.-++.
T Consensus 271 a~~~~i~A~---~y~~--~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 271 AFSGIIIAS---RFNV--YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHH---HHcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444433 3332 555555555555555666666665554
No 178
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=29.16 E-value=5.5e+02 Score=25.02 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=13.2
Q ss_pred hhHHHHHHHHhhchhh
Q 043324 45 GPVAQVLAGLVLGPTL 60 (788)
Q Consensus 45 ~ii~~IlaGilLGP~~ 60 (788)
.-+..+++|+++||..
T Consensus 34 ~~i~~vlaavllGP~~ 49 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWY 49 (160)
T ss_pred hHHHHHHHHHHHchHH
Confidence 4678899999999954
No 179
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=28.99 E-value=7.9e+02 Score=27.42 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043324 86 FARIFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAISWF 132 (788)
Q Consensus 86 igl~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~~~ 132 (788)
-|..+.|+..|.+.|++.+++..++...++++ ++.-+.+.-..+++
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG-~v~q~~i~pl~~f~ 162 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG-FVPQYLIMPLLGFL 162 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh-HHHHHHHHHHHHHh
Confidence 56667899999999999999999888777543 33344444444443
No 180
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=28.86 E-value=2.5e+02 Score=30.12 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=12.6
Q ss_pred HHHHHhcCcCCCchhH
Q 043324 163 IRLAADLKLDTSDVGR 178 (788)
Q Consensus 163 ~~iL~el~ll~s~~G~ 178 (788)
+.+++|+|+.++++.|
T Consensus 208 ~~~~K~lkMSKdEVkR 223 (349)
T COG4792 208 YQILKELKMSKDEVKR 223 (349)
T ss_pred HHHHHHhccCHHHHHH
Confidence 5678899988887765
No 181
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=28.17 E-value=3.4e+02 Score=25.44 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhchhhhhh
Q 043324 388 IRRLLLSVIVLNTLMAGPVVSFIMRKQEVQL 418 (788)
Q Consensus 388 ~~~~lv~~~lltt~i~~~lv~~l~~~~~~~~ 418 (788)
....++++++++..+++.++++++|+.++..
T Consensus 92 Il~~~iiST~lv~~vtg~~~~~l~~~~~~~~ 122 (128)
T COG1380 92 ILVVIIISTLLVLLVTGWVVQLLIRWQSKRH 122 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666777778888888888765543
No 182
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.05 E-value=1e+02 Score=34.98 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCceEEEEEecCC---hHHHHHHHHhhcC--cccEEEEecCCCC
Q 043324 686 VYMDEFYKRYVSSGQIGYVEKNLRD---GAETLQALRDIGD--MYSLFIVGKGRRG 736 (788)
Q Consensus 686 ~~~~~~~~~~~~~~~v~y~E~~v~~---~~~~~~~i~~~~~--~~dL~iVGr~~~~ 736 (788)
+.+...+.+...- +|.+....|-. +.|++++|+..+. ++|.+|||||+|.
T Consensus 151 DIl~~~~rR~P~~-~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 151 DILHTLSRRFPSV-EVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHhhCCCC-eEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 5566666676653 45555555532 4789999997753 5999999999874
No 183
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=27.58 E-value=5.4e+02 Score=28.16 Aligned_cols=42 Identities=19% Similarity=0.077 Sum_probs=30.2
Q ss_pred HHHHHHHhhccChhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043324 89 IFFMFLLGLEFDVPFMKRNLHLVTTVAYGGFMACGIFGAAIS 130 (788)
Q Consensus 89 ~lllF~~Gle~d~~~l~~~~~~~~~i~~~~~~ip~~l~~~~~ 130 (788)
-+.-|..|..+|+..+.+.+-....+++...+++..+++...
T Consensus 206 p~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~ 247 (326)
T PRK05274 206 PFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLAD 247 (326)
T ss_pred HHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHh
Confidence 335677999999999988888888777776666655444333
No 184
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=26.27 E-value=1.8e+02 Score=31.35 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=29.0
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFL 644 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~ 644 (788)
+.++.|.||+|+--.|.++.+.-...+..+.++++-
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~ID 56 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVD 56 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence 457789999999999999998865445677888884
No 185
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=25.52 E-value=2e+02 Score=30.38 Aligned_cols=29 Identities=28% Similarity=0.246 Sum_probs=26.4
Q ss_pred CccHHHHHHHHHHHhh-CCceEEEEEEccc
Q 043324 617 GPDDREAIACSKRLAM-HHHLNLTVIRFLP 645 (788)
Q Consensus 617 G~DDreAL~~a~rma~-~~~v~ltv~r~~~ 645 (788)
.|.|+-|++.|.|+.+ ..+.++|++.+=+
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp 65 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGP 65 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecc
Confidence 5889999999999999 6999999999954
No 186
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=25.51 E-value=7.7e+02 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=12.5
Q ss_pred HHHHHHHHhHHHHHHHhh
Q 043324 292 LTYAVHNFVLPSYFGFTG 309 (788)
Q Consensus 292 ~~~~~~~l~lplFFv~~G 309 (788)
+...+..++.|+++-..|
T Consensus 215 l~gi~tail~P~l~~l~~ 232 (232)
T PRK04288 215 VVGVVTVAVVPVFVPIIG 232 (232)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344567788888887655
No 187
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=25.41 E-value=9.2e+02 Score=26.38 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.1
Q ss_pred HHHHhccCCChhHHHHHHHHhhchhh
Q 043324 35 HLIFKPLGQPGPVAQVLAGLVLGPTL 60 (788)
Q Consensus 35 ~~l~~~l~~P~ii~~IlaGilLGP~~ 60 (788)
..+...+|+|+++.-+++|..+|-++
T Consensus 46 ~~ii~~~RlPRil~a~lvG~~La~sG 71 (325)
T TIGR03869 46 DAIVWDLRLPRVLTAAAVGAGLAIAG 71 (325)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999998665
No 188
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=24.88 E-value=2e+02 Score=27.06 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=44.5
Q ss_pred CChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccC-CCceEEEecCCC
Q 043324 533 PTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHA-PCSVGILVDRGC 595 (788)
Q Consensus 533 ~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~a-pCsVgIlVdRg~ 595 (788)
....+.+.+++++.+++.+++|+-.+ .||.........+++-+++-++. ++.| .++|-.+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLN--MDGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBB--CTSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcc--cCCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 57889999999999999999998543 34544334456788888888876 7887 5676654
No 189
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.76 E-value=1.3e+02 Score=34.47 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHHHHhccCCCceEEEEEecCC---hHHHHHHHHhhcC-cccEEEEecCCCC
Q 043324 686 VYMDEFYKRYVSSGQIGYVEKNLRD---GAETLQALRDIGD-MYSLFIVGKGRRG 736 (788)
Q Consensus 686 ~~~~~~~~~~~~~~~v~y~E~~v~~---~~~~~~~i~~~~~-~~dL~iVGr~~~~ 736 (788)
++++....++.. -++.+-...|-. ..+++++|+.+.. .||.+|+|||+|.
T Consensus 151 D~~~~~~~r~p~-~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 151 DILTVLRRRFPL-VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHhcCCC-CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 555666655433 356677777733 3678899988754 3899999999884
No 190
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=24.04 E-value=5.5e+02 Score=28.06 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 267 STVHCFLVGMMFPREGKTTRTLLHKLTYAVHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACY 346 (788)
Q Consensus 267 ~~lGaflaGL~l~~~~~~~~~l~ek~~~~~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~ 346 (788)
|.+--|+.|++.. --+-.-++-+.+-....-.++---=.--|+.+.-..+.. .+...+..+++.++.-+++-.+..+
T Consensus 1 P~vLFF~LG~~A~-~~kSdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~--~~~~~~~~~~lg~liPl~~~~iLr~ 77 (327)
T PF05982_consen 1 PVVLFFILGIIAA-LLKSDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTA--LLLPLLAAVLLGILIPLIAFPILRR 77 (327)
T ss_pred CchHHHHHHHHHH-HHcCCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHH-HHhHHHHHHHHhchhhhhhhccccc
Q 043324 347 YLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLN-TLMAGPVVSFIMRKQEVQLTHNRTS 424 (788)
Q Consensus 347 ~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~llt-t~i~~~lv~~l~~~~~~~~~~~~~~ 424 (788)
+.|++.- |+..++---...+.+.++.+...++..-+ +-+-|...++..+=+ .++...++.+++++++.......++
T Consensus 78 ~~~l~~~-daaAiAAhYGSVSavTF~~a~~~L~~~gi-~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~~ 154 (327)
T PF05982_consen 78 LGKLDRA-DAAAIAAHYGSVSAVTFAAALAFLESQGI-SYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASST 154 (327)
T ss_pred ccCCChh-hHHHHHHHcCchHHHHHHHHHHHHHHCCC-CccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCcc
No 191
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=23.17 E-value=1.1e+02 Score=29.84 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.1
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCC--ceEEEEEEccc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHH--HLNLTVIRFLP 645 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~--~v~ltv~r~~~ 645 (788)
||++.+.||.|.--++.++.+..++- +.+++++++-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 57899999999999999998887654 67788888753
No 192
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=22.56 E-value=1.3e+02 Score=27.98 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=28.2
Q ss_pred EEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCcc
Q 043324 523 VRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQ 559 (788)
Q Consensus 523 v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~ 559 (788)
..-..++-|...||..|.++|++.++|++|-|+..+.
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 3556788888999999999999999999999997654
No 193
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.10 E-value=3.6e+02 Score=28.51 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHhhHHHHHHHHHhhcCcCCC-CCChhhHHHHHHHHHHHHHhHHHHHHHHhch
Q 043324 335 AGKILGTLLACYYLKIPLNIEAVILAFILNLKGHADLVVVDASPNSEK-WWGEDIRRLLLSVIVLNTLMAGPVVSFIMRK 413 (788)
Q Consensus 335 ~~K~~~~~l~~~~~~~~~~~~a~~lglll~~kG~~~li~~~~~~~~~i-l~~~~~~~~lv~~~lltt~i~~~lv~~l~~~ 413 (788)
++|-..+..++++.|++.+ ++...+++|+.--.....++....-.+. . +......+.+..+++-+++-..++++.+-
T Consensus 162 iSRSG~Ti~~~l~~G~~r~-~A~~fSFllsiP~ilga~~l~~~~~~~~~~-~~~~~~~~~ig~~~afv~g~l~i~~ll~~ 239 (259)
T PF02673_consen 162 ISRSGATITAGLLLGLDRE-EAARFSFLLSIPAILGAGLLELKDLFSAGL-DSGSWPPLLIGFVVAFVVGYLAIKWLLRF 239 (259)
T ss_pred cChHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999 9999999998554444444333221111 3 33344444444444444444444554443
No 194
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.64 E-value=1.5e+02 Score=33.84 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHhccCCCceEEEEEecCC---hHHHHHHHHhhcC--cccEEEEecCCCC
Q 043324 686 VYMDEFYKRYVSSGQIGYVEKNLRD---GAETLQALRDIGD--MYSLFIVGKGRRG 736 (788)
Q Consensus 686 ~~~~~~~~~~~~~~~v~y~E~~v~~---~~~~~~~i~~~~~--~~dL~iVGr~~~~ 736 (788)
++++....++.. -++.+....|-. ..+++.+|+.+.. ++|++|||||+|.
T Consensus 145 D~~~~~~~r~p~-~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 145 DILHILKRRDPS-LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred HHHHHHHhhCCC-ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 556666666542 245555555643 3578888887653 4999999999885
No 195
>PRK04148 hypothetical protein; Provisional
Probab=20.69 E-value=1.3e+02 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=30.9
Q ss_pred EEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccc
Q 043324 525 QIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQR 560 (788)
Q Consensus 525 ~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~ 560 (788)
-..++-|...|+..|.++|++..+|++|-|+..+..
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 346777888999999999999999999999976643
No 196
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=20.36 E-value=6.4e+02 Score=28.80 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=32.3
Q ss_pred cEEEEEccCCccHHHHHHHHHHHh-hCCceEEEEEEccc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLA-MHHHLNLTVIRFLP 645 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma-~~~~v~ltv~r~~~ 645 (788)
.+|++-+.||+|.--.|.+..++. ..++..++++|+-.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnh 54 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHH 54 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeC
Confidence 689999999999998888888776 45688999999954
No 197
>COG3748 Predicted membrane protein [Function unknown]
Probab=20.19 E-value=7.9e+02 Score=26.74 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHH
Q 043324 296 VHNFVLPSYFGFTGFQFNISSLSTIDNVIVALVMVSLSIAGK 337 (788)
Q Consensus 296 ~~~l~lplFFv~~G~~idl~~l~~~~~~~~~~~i~~~~~~~K 337 (788)
.+-+-+|..|+..-=+..+.. ....+|.+..++.+..+..|
T Consensus 225 NnylTLPVlF~MlSNHyp~~~-gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 225 NNYLTLPVLFTMLSNHYPLAF-GTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred cceehHHHHHHHHhccCcccc-cCchhHHHHHHHHHHHHHHH
Confidence 345679998887765555433 22346876666665555444
No 198
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=20.01 E-value=1.3e+03 Score=26.23 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHhhchhhhccccc
Q 043324 30 VSHLFHLIFKPLGQPGPVAQVLAGLVLGPTLLCRIYV 66 (788)
Q Consensus 30 ~~~l~~~l~~~l~~P~ii~~IlaGilLGP~~lg~i~~ 66 (788)
+-.+...+-++.++|+-..-.+++++. ..+|...+
T Consensus 11 ~~~l~~~~~~p~~~~~~~~a~~Ga~l~--l~~giv~~ 45 (424)
T COG1055 11 IFTLVYVLIRPRKLPRAWAALLGALLA--LFLGIVTP 45 (424)
T ss_pred HHHHHHHhhhcCcCchHHHHHHHHHHH--HHHcCCCH
Confidence 334446667778999999998888765 23454443
Done!