Query 043324
Match_columns 788
No_of_seqs 340 out of 2412
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 8.9E-25 3E-29 237.3 9.6 302 80-412 60-385 (388)
2 3mt0_A Uncharacterized protein 99.3 9.1E-11 3.1E-15 124.5 19.1 262 434-777 8-277 (290)
3 3loq_A Universal stress protei 99.1 1.6E-10 5.3E-15 122.8 11.4 185 434-645 23-208 (294)
4 3olq_A Universal stress protei 99.1 6.2E-10 2.1E-14 119.5 12.7 290 434-778 8-307 (319)
5 3ab8_A Putative uncharacterize 99.0 1.3E-09 4.3E-14 114.0 13.7 182 435-645 2-192 (268)
6 3cis_A Uncharacterized protein 99.0 8.3E-10 2.8E-14 118.1 12.4 187 433-645 19-209 (309)
7 3hgm_A Universal stress protei 97.8 9.7E-06 3.3E-10 75.8 4.3 139 435-589 4-146 (147)
8 3zux_A Transporter, ASBTNM; tr 97.8 0.025 8.4E-07 60.6 30.7 71 335-410 239-310 (332)
9 3s3t_A Nucleotide-binding prot 97.8 2E-05 7E-10 73.5 5.2 137 434-590 6-145 (146)
10 2dum_A Hypothetical protein PH 97.7 6.5E-05 2.2E-09 72.2 7.5 142 435-590 7-154 (170)
11 3dlo_A Universal stress protei 97.6 6.5E-05 2.2E-09 71.4 6.8 129 434-590 25-154 (155)
12 1mjh_A Protein (ATP-binding do 97.6 9.6E-05 3.3E-09 70.3 7.5 142 434-590 6-157 (162)
13 3fdx_A Putative filament prote 97.6 4.8E-05 1.7E-09 70.6 5.2 136 434-590 2-142 (143)
14 3s3t_A Nucleotide-binding prot 97.6 0.00056 1.9E-08 63.5 12.3 137 607-775 5-146 (146)
15 1tq8_A Hypothetical protein RV 97.6 8.9E-05 3E-09 71.1 6.9 136 434-590 18-156 (163)
16 3idf_A USP-like protein; unive 97.5 0.00096 3.3E-08 61.3 13.0 39 608-646 2-41 (138)
17 3fg9_A Protein of universal st 97.5 4E-05 1.4E-09 72.5 2.9 136 434-590 16-155 (156)
18 2z08_A Universal stress protei 97.5 0.00053 1.8E-08 63.1 10.1 133 608-774 3-136 (137)
19 2z08_A Universal stress protei 97.4 7.5E-05 2.6E-09 69.0 4.2 132 435-590 4-136 (137)
20 3dlo_A Universal stress protei 97.4 0.00029 9.8E-09 66.8 8.4 126 608-775 25-155 (155)
21 3idf_A USP-like protein; unive 97.4 0.00011 3.8E-09 67.7 5.2 133 435-590 3-137 (138)
22 3tnj_A Universal stress protei 97.4 7.8E-05 2.7E-09 69.9 4.1 138 434-590 7-145 (150)
23 3hgm_A Universal stress protei 97.4 0.00036 1.2E-08 64.9 8.4 38 608-645 3-40 (147)
24 3fdx_A Putative filament prote 97.4 0.00098 3.3E-08 61.6 11.4 39 608-646 2-42 (143)
25 1jmv_A USPA, universal stress 97.4 0.00045 1.5E-08 63.8 8.6 131 435-590 4-136 (141)
26 2gm3_A Unknown protein; AT3G01 97.4 0.00026 8.7E-09 68.3 7.0 146 434-591 6-162 (175)
27 1tq8_A Hypothetical protein RV 97.4 0.001 3.6E-08 63.5 11.2 140 607-779 17-161 (163)
28 3tnj_A Universal stress protei 97.3 0.00068 2.3E-08 63.3 9.3 141 607-777 6-148 (150)
29 1mjh_A Protein (ATP-binding do 97.3 0.0011 3.9E-08 62.7 10.3 149 608-777 6-160 (162)
30 2dum_A Hypothetical protein PH 97.2 0.0016 5.6E-08 62.2 11.2 147 608-778 6-158 (170)
31 1jmv_A USPA, universal stress 97.2 0.0014 4.9E-08 60.4 9.5 136 608-777 3-139 (141)
32 3fg9_A Protein of universal st 97.0 0.0012 3.9E-08 62.3 7.0 136 607-775 15-156 (156)
33 1q77_A Hypothetical protein AQ 96.6 0.002 6.8E-08 59.2 5.7 39 607-645 4-43 (138)
34 1q77_A Hypothetical protein AQ 96.6 0.0014 4.8E-08 60.2 4.3 129 434-589 5-136 (138)
35 3ab8_A Putative uncharacterize 96.5 0.0039 1.3E-07 64.2 7.8 148 608-778 1-151 (268)
36 3cis_A Uncharacterized protein 96.4 0.0046 1.6E-07 65.3 7.6 141 607-778 19-163 (309)
37 3loq_A Universal stress protei 96.3 0.0038 1.3E-07 65.4 6.1 119 433-590 170-288 (294)
38 3mt0_A Uncharacterized protein 96.3 0.0029 9.8E-08 66.3 4.8 133 433-590 134-274 (290)
39 2gm3_A Unknown protein; AT3G01 96.3 0.037 1.3E-06 52.8 12.4 148 607-779 5-166 (175)
40 3olq_A Universal stress protei 96.2 0.0035 1.2E-07 66.4 5.2 57 533-595 252-308 (319)
41 3g40_A Na-K-CL cotransporter; 72.7 29 0.00098 35.7 11.7 223 431-735 18-255 (294)
42 3zux_A Transporter, ASBTNM; tr 62.7 54 0.0019 34.4 12.1 76 298-376 46-125 (332)
43 2l0e_A Sodium/hydrogen exchang 48.9 3.1 0.00011 28.1 -0.3 28 144-171 3-30 (33)
44 1efp_B ETF, protein (electron 40.7 33 0.0011 34.6 5.7 27 617-644 36-64 (252)
45 1zun_A Sulfate adenylyltransfe 40.5 25 0.00086 36.9 4.9 36 609-644 48-83 (325)
46 1efv_B Electron transfer flavo 39.6 33 0.0011 34.7 5.4 27 617-644 39-67 (255)
47 2wsi_A FAD synthetase; transfe 38.9 1.3E+02 0.0045 30.9 10.2 24 608-631 54-77 (306)
48 1o97_C Electron transferring f 37.3 87 0.003 31.7 8.2 28 617-644 36-65 (264)
49 1ni5_A Putative cell cycle pro 35.6 91 0.0031 33.9 8.7 38 608-645 14-52 (433)
50 1iv0_A Hypothetical protein; r 28.2 97 0.0033 26.2 5.7 57 534-594 38-94 (98)
51 3fwk_A FMN adenylyltransferase 25.8 2.5E+02 0.0086 29.0 9.4 23 608-630 59-81 (308)
52 2k4m_A TR8_protein, UPF0146 pr 21.4 1.3E+02 0.0043 27.8 5.3 38 524-561 91-128 (153)
53 2k3c_A TMIX peptide; membrane 21.1 2.1 7.4E-05 28.8 -4.8 26 255-280 5-30 (33)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.91 E-value=8.9e-25 Score=237.26 Aligned_cols=302 Identities=16% Similarity=0.216 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHH----Hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 043324 80 YRFYAFFARIFFMFLLGLEFDVPFM----KRNLH--LVTTVAYGGFMACGIFGAAISWFIIRELTISYNKIAFAIVTIII 153 (788)
Q Consensus 80 ~~~l~~igl~lllF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~ip~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 153 (788)
...+.+-.+.+|||.+|+|+|.+.+ ++.+| .+...+++|+++|++++.. .+. ....+...+.+
T Consensus 60 ~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~-----~~~------~~~~~~~gw~i 128 (388)
T 1zcd_A 60 LLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA-----FNY------ADPITREGWAI 128 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG-----GCC------SSTTHHHHTSS
T ss_pred HHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH-----Hhc------CChhhhhhhHH
Confidence 3457788999999999999999877 55544 3788899999999987421 122 22334566667
Q ss_pred HhcccHHHHHHHHHhcCc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043324 154 IANSASPVVIRLAADLKL-DTSDVGRLAMSSSLINEMSCSLLFSLVVAFTEDGMFKTLLLSIFLTASLILVNCYLVIWFN 232 (788)
Q Consensus 154 ls~Ts~~vv~~iL~el~l-l~s~~G~l~ls~a~i~D~~~~ill~l~~~~~~~~~~~~~~l~~l~~~~~~~v~r~~~~~l~ 232 (788)
.+.|+.+....++..++. ..+..++.+++.+++||+.+|++++++.. ++ .... ++.. .+..++. +.++.
T Consensus 129 p~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~~~~--~l~~-~~~~~~~---~~~l~ 198 (388)
T 1zcd_A 129 PAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-LSMA--SLGV-AAVAIAV---LAVLN 198 (388)
T ss_dssp SSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-CCHH--HHHH-HHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-ccHH--HHHH-HHHHHHH---HHHHH
Confidence 788999999999999765 44556699999999999999999998863 22 1111 1111 1111111 12222
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhccCCC----chhHHHHHHHHHHHHHHhHHHH-HHH
Q 043324 233 TKSRNQKFINNSQVLLILVLLISVSMIIESSGLYSTVHCFLVGMMFPREG----KTTRTLLHKLTYAVHNFVLPSY-FGF 307 (788)
Q Consensus 233 ~~~~~~~~~~e~~~~~il~~~l~~~~~~e~~G~~~~lGaflaGL~l~~~~----~~~~~l~ek~~~~~~~l~lplF-Fv~ 307 (788)
|+. ++....+.++ . +.+.+.++..|+|+++|+|++|+++|..+ +..+++.++++.++..+++|+| |+.
T Consensus 199 r~~-----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFan 271 (388)
T 1zcd_A 199 LCG-----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFAN 271 (388)
T ss_dssp HTT-----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred Hhc-----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 1223333333 2 24567779999999999999999999743 3467888999998889999999 999
Q ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHhhHHHHHHHHHhhc
Q 043324 308 TGFQFNISSLSTIDNVIVALVMVSLSIAGKILGTLLACYYL----------KIPLNIEAVILAFILNLKGHADLVVVDAS 377 (788)
Q Consensus 308 ~G~~idl~~l~~~~~~~~~~~i~~~~~~~K~~~~~l~~~~~----------~~~~~~~a~~lglll~~kG~~~li~~~~~ 377 (788)
.|+++|...+..... .....+++..+++|++|++..++.. |++|+ |...+|++++.++++++++++++
T Consensus 272 aGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~-~~~~vg~L~gigftmsL~Ia~la 349 (388)
T 1zcd_A 272 AGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQ-QIMVVGILCGIGFTMSIFIASLA 349 (388)
T ss_dssp CCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGG-GGTTHHHHTTCCHHHHHHHHHHH
T ss_pred cCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHH-HHHHHHHHhccchHHHHHHHHHh
Confidence 999999854432111 1233556667899999977777766 99999 99999999999999999999999
Q ss_pred CcCCC--CCChhhHHHHHHHHHHHHHhHHHHHHHHhc
Q 043324 378 PNSEK--WWGEDIRRLLLSVIVLNTLMAGPVVSFIMR 412 (788)
Q Consensus 378 ~~~~i--l~~~~~~~~lv~~~lltt~i~~~lv~~l~~ 412 (788)
++.+. + .++.+..++++++++++++|.+.++.++
T Consensus 350 f~~~~~~~-~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 350 FGSVDPEL-INWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp STTSSCSS-HHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred ccCCchhh-HhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98875 4 5667999999999999999988776554
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.28 E-value=9.1e-11 Score=124.46 Aligned_cols=262 Identities=14% Similarity=0.144 Sum_probs=161.6
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD 513 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~ 513 (788)
-|||+|+.+.++....+..+..+....+ ..++++|+++ + .+ .+..+ .++.+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~-~---------~~---------------~~~~l--~~~~~ 58 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEK-R---------RD---------------HSAAL--NDLAQ 58 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECS-S---------SC---------------CHHHH--HHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeC-c---------HH---------------HHHHH--HHHHH
Confidence 3899999998888888887777765433 4688999876 1 00 11122 02222
Q ss_pred hhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEecC
Q 043324 514 IFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDR 593 (788)
Q Consensus 514 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdR 593 (788)
.+ ...++.++...... .+..+.|++.|++..+|+|++|.|++...++. .++..-+++++++||+|-+. +
T Consensus 59 ~~-~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~------~~gs~~~~vl~~~~~PVlvv--~ 127 (290)
T 3mt0_A 59 EL-REEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA------ILTPDDWKLLRFAPCPVLMT--K 127 (290)
T ss_dssp HH-HHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT------SCCHHHHHHHHHCSSCEEEE--C
T ss_pred HH-hhCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhc------ccCHHHHHHHhcCCCCEEEe--c
Confidence 22 23456666555433 46799999999999999999999976544332 35566889999999997664 3
Q ss_pred CCcccccccCCCCccEEEEEccCCcc-------HHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCC
Q 043324 594 GCLEFQRLLAPDSLQSVATLFFGGPD-------DREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNL 666 (788)
Q Consensus 594 g~~~~~~~~~~~~~~~i~v~f~GG~D-------DreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~ 666 (788)
..... ..++|++++=|.++ .+.|+++|.++|+..+.+++++|+.+..... .. .
T Consensus 128 ~~~~~-------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~-------~----- 187 (290)
T 3mt0_A 128 TARPW-------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLS-SA-------D----- 187 (290)
T ss_dssp CCSCS-------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------------------
T ss_pred CCCCC-------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccc-cc-------C-----
Confidence 21111 23799999999988 7999999999999999999999998632110 00 0
Q ss_pred CcchhhhhccCCCccccHHHHHHHHHHhccCCCceEEEEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCC
Q 043324 667 GNEVFMSIARRNPENKRDDVYMDEFYKRYVSSGQIGYVEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMS 745 (788)
Q Consensus 667 ~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~ 745 (788)
.+ . .. .+..++..++.++++..+..- +.+.+ +....+..+ +.+..++ .++||+|+|++++. |+.
T Consensus 188 ~~--~-~~--~~~~~~~~~~~l~~~~~~~g~-~~~~~-~v~~g~~~~~I~~~a~~--~~~dLiVmG~~g~~------~~~ 252 (290)
T 3mt0_A 188 PT--F-QL--SETIEARYREACRTFQAEYGF-SDEQL-HIEEGPADVLIPRTAQK--LDAVVTVIGTVART------GLS 252 (290)
T ss_dssp -C--H-HH--HHHHHHHHHHHHHHHHHHHTC-CTTTE-EEEESCHHHHHHHHHHH--HTCSEEEEECCSSC------CGG
T ss_pred ch--h-HH--HHHHHHHHHHHHHHHHHHcCC-CcceE-EEeccCHHHHHHHHHHh--cCCCEEEECCCCCc------CCc
Confidence 00 0 00 001122234556666655422 11111 111234333 3333332 35999999987542 233
Q ss_pred CCCCCCccchhhhhhhcCCCCCceeEEEEeec
Q 043324 746 DWEECPELGVVGDLLASMDFDIKSSVLVIQQH 777 (788)
Q Consensus 746 ~w~e~~eLG~iGd~las~d~~~~~SvLVvQq~ 777 (788)
+| =+|-+.+-+... ++.+||||..+
T Consensus 253 ~~----~~Gsv~~~vl~~---~~~pVLvv~~~ 277 (290)
T 3mt0_A 253 GA----LIGNTAEVVLDT---LESDVLVLKPD 277 (290)
T ss_dssp GC----CSCHHHHHHHTT---CSSEEEEECCH
T ss_pred ce----ecchHHHHHHhc---CCCCEEEECCC
Confidence 32 267777666654 56799999755
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.13 E-value=1.6e-10 Score=122.83 Aligned_cols=185 Identities=12% Similarity=0.035 Sum_probs=119.6
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD 513 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~ 513 (788)
-|||+|+.+.++....++.+..+.... ...++++|+++..... .. .. ........+......+..+ +.+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~-~~---~~-~~~~~~~~~~~~~~~~~~l---~~~~ 92 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVG--VEEIGVLFVINLTKLS-TV---SG-GIDIDHYIDEMSEKAEEVL---PEVA 92 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTT--CCEEEEECCEECTTC----------CCCTTHHHHHHHHHHHHHH---HHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCcccc-cc---cc-cccHHHHHHHHHHHHHHHH---HHHH
Confidence 489999999988888888777776543 3578999998865322 10 00 0000000000000112222 2222
Q ss_pred hhhcCCceEEEE-EEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEec
Q 043324 514 IFSSETKIFVRQ-IKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVD 592 (788)
Q Consensus 514 ~~~~~~~v~v~~-~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVd 592 (788)
......++.++. ...-. .+..+.| .|+++++|+|++|.|++....+ ..++++.+++++++||+|-|. .
T Consensus 93 ~~~~~~g~~~~~~~v~~~--g~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlvv-~ 161 (294)
T 3loq_A 93 QKIEAAGIKAEVIKPFPA--GDPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYIF-K 161 (294)
T ss_dssp HHHHHTTCEEEECSSCCE--ECHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEEE-C
T ss_pred HHHHHcCCCcceeEeecc--CChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEEe-c
Confidence 222334677665 32202 3568888 9999999999999987643222 224566889999999998654 2
Q ss_pred CCCcccccccCCCCccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 593 RGCLEFQRLLAPDSLQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 593 Rg~~~~~~~~~~~~~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
++.. . .....+|++++=|.++++.|+++|.++++..+.+++++++.+
T Consensus 162 ~~~~-~-----~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 208 (294)
T 3loq_A 162 HDMV-V-----NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSE 208 (294)
T ss_dssp CCTT-T-----TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred Cccc-c-----CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEcc
Confidence 2211 0 112479999999999999999999999999999999999976
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.06 E-value=6.2e-10 Score=119.46 Aligned_cols=290 Identities=12% Similarity=0.083 Sum_probs=162.3
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD 513 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~ 513 (788)
-|||+++.+.++....+..+..++...+ ..++++|+++-....... .......+... .....+.+..+ +.+.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l---~~~~ 79 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDMTT-LLSPDERNAMR--KGVINQKTAWI---KQQA 79 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGCTT-TSCHHHHHHHH--HHHHHHHHHHH---HHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhhcc-ccChhhHHHHH--HHHHHHHHHHH---HHHH
Confidence 3899999999988888887777765433 478999987532111000 00000000000 00000011111 1111
Q ss_pred hhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEecC
Q 043324 514 IFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDR 593 (788)
Q Consensus 514 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdR 593 (788)
......+++++...... .+..+.|++.|+++.+|+|++|+|++....+. .++..-++|++++||+|-+.-++
T Consensus 80 ~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 80 RYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSL------IFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSC------BCCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhcc------cccccHHHHHhcCCCCEEEecCc
Confidence 11123567777665533 47899999999999999999999976544332 24566789999999998665222
Q ss_pred CCcccccccCCCCccEEEEEccCCcc-------HHHHHHHHHHHhhCC--ceEEEEEEcccCCCCCcccccCCCCCCCCC
Q 043324 594 GCLEFQRLLAPDSLQSVATLFFGGPD-------DREAIACSKRLAMHH--HLNLTVIRFLPSEFGEEDVNVSSSTASPHF 664 (788)
Q Consensus 594 g~~~~~~~~~~~~~~~i~v~f~GG~D-------DreAL~~a~rma~~~--~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~ 664 (788)
. . ....+|++++=|.++ .+.|+++|.++|+.. +.+++++|+.+........ . ..
T Consensus 152 ~-~--------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~----~--~~-- 214 (319)
T 3olq_A 152 E-W--------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAI----E--LP-- 214 (319)
T ss_dssp C-C--------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCT----T--CT--
T ss_pred c-c--------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhc----c--CC--
Confidence 1 1 123799999999985 499999999999887 9999999998632111000 0 00
Q ss_pred CCCcchhhhhccCCCccccHHHHHHHHHHhccCCCceEEEEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccC
Q 043324 665 NLGNEVFMSIARRNPENKRDDVYMDEFYKRYVSSGQIGYVEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTG 743 (788)
Q Consensus 665 ~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~g 743 (788)
..+.. ... +..++.-++.++++..++... .+.+. ....+..+ +.+..++ .+.||+|+|.+++. |
T Consensus 215 -~~~~~--~~~--~~~~~~~~~~l~~~~~~~~~~-~~~~~-v~~g~~~~~I~~~a~~--~~~dLiV~G~~g~~------~ 279 (319)
T 3olq_A 215 -DFDPN--LYN--NALRGQHLIAMKELRQKFSIP-EEKTH-VKEGLPEQVIPQVCEE--LNAGIVVLGILGRT------G 279 (319)
T ss_dssp -TCCHH--HHH--HHHHHHHHHHHHHHHHHTTCC-GGGEE-EEESCHHHHHHHHHHH--TTEEEEEEECCSCC------S
T ss_pred -cccHH--HHH--HHHHHHHHHHHHHHHHHhCCC-cccEE-EecCCcHHHHHHHHHH--hCCCEEEEeccCcc------C
Confidence 00000 000 001122245566666554322 22111 11233332 2222222 46899999997532 1
Q ss_pred CCCCCCCCccchhhhhhhcCCCCCceeEEEEeecc
Q 043324 744 MSDWEECPELGVVGDLLASMDFDIKSSVLVIQQHR 778 (788)
Q Consensus 744 l~~w~e~~eLG~iGd~las~d~~~~~SvLVvQq~~ 778 (788)
+.+| =+|-+.+-+... ++.+||||..+.
T Consensus 280 ~~~~----~~Gsv~~~vl~~---~~~pVLvv~~~~ 307 (319)
T 3olq_A 280 LSAA----FLGNTAEQLIDH---IKCDLLAIKPDG 307 (319)
T ss_dssp THHH----HHHHHHHHHHTT---CCSEEEEECCTT
T ss_pred Cccc----cccHHHHHHHhh---CCCCEEEECCCC
Confidence 2222 256666666644 567999998765
No 5
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.04 E-value=1.3e-09 Score=114.03 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=117.0
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCC-CCc-------cCCCccCCCccc
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDG-DQF-------SDEDEYGGNDVM 506 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~i~ 506 (788)
|||+|+.+.++....++.+..+....+ ..++++|+++......+. ....... ... ........+..+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLS--APLTVLFVVDTRLARIPE---LLDFGALTVPVPVLRTELERALALRGEAVL 76 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHT--CCEEEEEEEEHHHHTHHH---HC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCccccc---ccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999988887878777777764333 478999998754211000 0000000 000 000000011222
Q ss_pred chhHHHHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCcc-ccCCccccCchhhHHHHHHhhccCCC
Q 043324 507 EINEAVDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQ-RIDGKMEKGKDEMRSTNQKIIRHAPC 585 (788)
Q Consensus 507 ~~~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~-~~dg~~~~~~~~~r~~n~~vl~~apC 585 (788)
+.+....+..+++++...... +..+.|++. +.++|+|++|.|++. ...+. .++++-++|++++||
T Consensus 77 ---~~~~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~------~~Gs~~~~v~~~a~~ 142 (268)
T 3ab8_A 77 ---ERVRQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFG------GLGSTADRVLRASPV 142 (268)
T ss_dssp ---HHHHHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCC------SCCHHHHHHHHHCSS
T ss_pred ---HHHHHHHHhCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCcccccc------ccchhHHHHHHhCCC
Confidence 222222223456666555433 678999998 889999999999765 43332 356678999999999
Q ss_pred ceEEEecCCCcccccccCCCCccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 586 SVGILVDRGCLEFQRLLAPDSLQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 586 sVgIlVdRg~~~~~~~~~~~~~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
+|-|. .++.. ...+|++++=|.++++.|+++|.++++..+.+++++|+.+
T Consensus 143 PVlvv-~~~~~---------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~ 192 (268)
T 3ab8_A 143 PVLLA-PGEPV---------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHE 192 (268)
T ss_dssp CEEEE-CSSCC---------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECS
T ss_pred CEEEE-CCCCC---------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcC
Confidence 98653 32211 2369999999999999999999999999999999999975
No 6
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.04 E-value=8.3e-10 Score=118.12 Aligned_cols=187 Identities=15% Similarity=0.139 Sum_probs=117.9
Q ss_pred ceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHH
Q 043324 433 ELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAV 512 (788)
Q Consensus 433 elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af 512 (788)
--|||+++.+.+.....++.+..+....+ ..++++|+++ +... + ...... .....+......+..+ .++.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~-~~~~-~--~~~~~~--~~~~~~~~~~~~~~~l--~~~~ 88 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRK--IPLTLVHAVS-PEVA-T--WLEVPL--PPGVLRWQQDHGRHLI--DDAL 88 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHT--CCEEEEEECC-CCCC-C--TTCCCC--CHHHHHHHHHHHHHHH--HHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcC--CcEEEEEEec-Cccc-c--cccCCC--CchhhHHHHHHHHHHH--HHHH
Confidence 35899999988877777777666654323 4689999987 2211 1 000000 0000000000112222 1222
Q ss_pred Hhhhc----CCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceE
Q 043324 513 DIFSS----ETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVG 588 (788)
Q Consensus 513 ~~~~~----~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVg 588 (788)
+.+.. ..++.++..... .+..+.|++.|+ ++|+|++|.|++....+. .++++-++|++++||+|-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~------~~Gs~~~~vl~~~~~PVl 157 (309)
T 3cis_A 89 KVVEQASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGR------LLGSVSSGLLRHAHCPVV 157 (309)
T ss_dssp HHHHHHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTC------CSCHHHHHHHHHCSSCEE
T ss_pred HHHHHhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCcccccc------ccCcHHHHHHHhCCCCEE
Confidence 22221 125666655443 468999999996 899999999876543332 356678999999999986
Q ss_pred EEecCCCcccccccCCCCccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 589 ILVDRGCLEFQRLLAPDSLQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 589 IlVdRg~~~~~~~~~~~~~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
|. |..... . ......+|++++=|.+.++.|+++|.++|+..+.+++++|+.+
T Consensus 158 vv--~~~~~~-~--~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~ 209 (309)
T 3cis_A 158 II--HDEDSV-M--PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWS 209 (309)
T ss_dssp EE--CTTCCC-S--CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred EE--cCCccc-C--CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEee
Confidence 64 321110 0 0112368999999999999999999999999999999999986
No 7
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.83 E-value=9.7e-06 Score=75.77 Aligned_cols=139 Identities=13% Similarity=0.100 Sum_probs=81.1
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCcccccc-ccccccccCCCCccCCCccCCCcccchhHHHH
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKK-NLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD 513 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~ 513 (788)
|||+++.+.++....+..+..+....+ -.++++|+++........ ........+.. .+......++.+ +.+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l---~~~~ 76 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEASLSMARPEQLDIP--DDALKDYATEIA---VQAK 76 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHHTBSSCCCGGGCCC--TTHHHHHHHHHH---HHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCcccccccccccChhhhhhH--HHHHHHHHHHHH---HHHH
Confidence 799999888777777776666654322 578999998864311000 00000000000 000001112222 2332
Q ss_pred hhhcCCceEE---EEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEE
Q 043324 514 IFSSETKIFV---RQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGI 589 (788)
Q Consensus 514 ~~~~~~~v~v---~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgI 589 (788)
...+..++.+ +..... .+..+.|++.|++.++|+|++|.|++....+. .++++-++|++++||+|-|
T Consensus 77 ~~~~~~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSL------LLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCC------CCCHHHHHHHHHCSSCEEE
T ss_pred HHHHhcCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccccce------eeccHHHHHHhhCCCCEEE
Confidence 2222334444 544433 36799999999999999999999976544332 3567789999999999854
No 8
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.80 E-value=0.025 Score=60.60 Aligned_cols=71 Identities=8% Similarity=0.026 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHH-hhHHHHHHHHHhhcCcCCCCCChhhHHHHHHHHHHHHHhHHHHHHHH
Q 043324 335 AGKILGTLLACYYLKIPLNIEAVILAFIL-NLKGHADLVVVDASPNSEKWWGEDIRRLLLSVIVLNTLMAGPVVSFI 410 (788)
Q Consensus 335 ~~K~~~~~l~~~~~~~~~~~~a~~lglll-~~kG~~~li~~~~~~~~~il~~~~~~~~lv~~~lltt~i~~~lv~~l 410 (788)
..-+..++..++.+|.+.+ |+..+++-. +++....+.++...+.. ++..--...+..+...+.+..+..+.
T Consensus 239 ~~~~~lg~~~~r~~~~~~~-~~~ti~~e~G~qNs~lai~lA~~~F~~----~p~~alp~~iy~~~q~i~~~~la~~~ 310 (332)
T 3zux_A 239 GIGYLLGFFAAKWTGLPYD-AQKALTIEVGMQNSGLAAALAAAHFAA----APVVAVPGALFSVWHNISGSLLATYW 310 (332)
T ss_dssp HHHHHHHHHHHHHTTCCHH-HHHHHHHHHHCCCHHHHHHHHHHHSTT----CGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHh-HhhhhhhhhhhccHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777889999999 999998844 44466777777655521 22233333445555555555555544
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=97.76 E-value=2e-05 Score=73.50 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=84.7
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCcccccccc-ccccccCCCCccCCCccCCCcccchhHHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNL-MYHQLQDGDQFSDEDEYGGNDVMEINEAV 512 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~af 512 (788)
-|||+++.+.++....++.+..+.... .-.++++|+++.......... ...+.. ++.....+..+ +.+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l---~~~ 74 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH--QANLTALYVVDDSAYHTPALDPVLSELL------DAEAAHAKDAM---RQR 74 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEECCCCCCGGGHHHHHHHH------HHHHHHHHHHH---HHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccHHHH------HHHHHHHHHHH---HHH
Confidence 389999988887777777776665432 347899999887543311000 000000 00001112222 333
Q ss_pred HhhhcCCce-EEEEEEEeeCCCChhHHHHH-HHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 513 DIFSSETKI-FVRQIKAVSSFPTMYEDVCS-QAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 513 ~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~-~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
.......++ .++...... +..+.|++ .|++.++|+|++|.|++....+. .++++-++|++++||+|-|.
T Consensus 75 ~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRV------AVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTC------SSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHhcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceE------EEcchHHHHhccCCCCEEEe
Confidence 322233456 666555544 57899999 99999999999999876544332 35677899999999998653
No 10
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.67 E-value=6.5e-05 Score=72.19 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=81.1
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCcccccc-ccc--cccc-cCCCCccCCCccCCCcccchhH
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKK-NLM--YHQL-QDGDQFSDEDEYGGNDVMEINE 510 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~-~~~--~~~~-~~~~~~~~~~~~~~~~i~~~~~ 510 (788)
|||+|+.+.++....++.+..+.... ...++++|+++........ -+. +... .+.....++.....+..+ +
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ 81 (170)
T 2dum_A 7 KVLFPTDFSEGAYRAVEVFEKRNKME--VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKL---Q 81 (170)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHCCSC--CSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHH---H
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHH---H
Confidence 79999988888777888888887543 3578999998753221000 000 0000 000000000000011122 2
Q ss_pred HHHhhhcCCceEEEE--EEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceE
Q 043324 511 AVDIFSSETKIFVRQ--IKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVG 588 (788)
Q Consensus 511 af~~~~~~~~v~v~~--~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVg 588 (788)
.+....+..++.++. .... .+..+.|++.|++.++|+|++|.|++....+ ..++++-++|++++||+|-
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLSH------EFLGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC--T------TCCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHcCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcccc------ceechHHHHHHHhCCCCEE
Confidence 221111122444444 3333 3679999999999999999999997654332 2356778999999999987
Q ss_pred EE
Q 043324 589 IL 590 (788)
Q Consensus 589 Il 590 (788)
|.
T Consensus 153 vv 154 (170)
T 2dum_A 153 II 154 (170)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=97.64 E-value=6.5e-05 Score=71.35 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=81.8
Q ss_pred eEEEEEEeC-CCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHH
Q 043324 434 LRMICCVYK-PRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAV 512 (788)
Q Consensus 434 lriLvcv~~-~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af 512 (788)
-|||+|+.+ .+.....+..+..+....+ ..++++|+++..... ... .....+..+ +.+
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~--a~l~llhV~~~~~~~------~~~----------~~~~~~~~l---~~~ 83 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRG--VPVYVVHSLPGGGRT------KDE----------DIIEAKETL---SWA 83 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHT--CCEEEEEEECCSTTS------CHH----------HHHHHHHHH---HHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEcCCCcc------cHH----------HHHHHHHHH---HHH
Confidence 479999988 7776777777766654333 467999998754211 000 001112223 222
Q ss_pred HhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 513 DIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 513 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
....+..++.++..+.+. ..+..+.|++.|++.++|+|++|.|++....+. .++.+-++|++++||+|-|.
T Consensus 84 ~~~~~~~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~------~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 84 VSIIRKEGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL------IFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHTTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE------ECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHhcCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE------EeccHHHHHHHhCCCCEEEe
Confidence 222223344454444442 247899999999999999999999876544332 35677899999999998653
No 12
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.61 E-value=9.6e-05 Score=70.29 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=83.3
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCcc---cccccccccc--c-cCC----CCccCCCccCCC
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKR---RKKKNLMYHQ--L-QDG----DQFSDEDEYGGN 503 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r---~~~~~~~~~~--~-~~~----~~~~~~~~~~~~ 503 (788)
-|||+|+.+.++....++.+..+.... ...++++|+++.... .... ..... . ... ....++.....+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLK--AEEVILLHVIDEREIKKRDIFS-LLLGVAGLNKSVEEFENELKNKLTEEAK 82 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSS--CCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCeEEEEEEecCcccccccccc-ccccccccccchhhhHHHHHHHHHHHHH
Confidence 389999988888777888888887543 357899999875310 0000 00000 0 000 000000000011
Q ss_pred cccchhHHHHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccC
Q 043324 504 DVMEINEAVDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHA 583 (788)
Q Consensus 504 ~i~~~~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~a 583 (788)
..+ +.+.......++.++...... +..+.|++.|++.++|+|++|.|++....+. .++++-++|++++
T Consensus 83 ~~l---~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~------~~GSv~~~vl~~~ 150 (162)
T 1mjh_A 83 NKM---ENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEI------LLGSVTENVIKKS 150 (162)
T ss_dssp HHH---HHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTC------SSCHHHHHHHHHC
T ss_pred HHH---HHHHHHHHHcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccce------EecchHHHHHHhC
Confidence 122 222111123456666554443 6799999999999999999999977544332 3567789999999
Q ss_pred CCceEEE
Q 043324 584 PCSVGIL 590 (788)
Q Consensus 584 pCsVgIl 590 (788)
||+|-|.
T Consensus 151 ~~pVlvv 157 (162)
T 1mjh_A 151 NKPVLVV 157 (162)
T ss_dssp CSCEEEE
T ss_pred CCCEEEE
Confidence 9998665
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.61 E-value=4.8e-05 Score=70.64 Aligned_cols=136 Identities=10% Similarity=0.044 Sum_probs=79.8
Q ss_pred eEEEEEEeCCCC--chhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHH
Q 043324 434 LRMICCVYKPRN--ASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEA 511 (788)
Q Consensus 434 lriLvcv~~~~~--~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a 511 (788)
-|||+|+.+.++ ....+..+..+.... ...++++|+++........ ........ +......++.. +.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~---~~ 70 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID--DAEVHFLTVIPSLPYYASL---GMAYTAEL---PGMDELREGSE---TQ 70 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH--TCEEEEEEEECC----------------------CHHHHHHHHH---HH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc--CCeEEEEEEecCCcccccc---cccccchh---hhHHHHHHHHH---HH
Confidence 379999988887 666766666665332 2478999998765322100 00000000 00000112222 44
Q ss_pred HHhhhcCC---ceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceE
Q 043324 512 VDIFSSET---KIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVG 588 (788)
Q Consensus 512 f~~~~~~~---~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVg 588 (788)
++.+.+.. ++.++...... +..+.|++.|++.++|+|++|.|+ ....+ ..++++-++|++++||+|-
T Consensus 71 l~~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~------~~~Gs~~~~v~~~~~~pVl 140 (143)
T 3fdx_A 71 LKEIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITT------YLLGSNAAAVVRHAECSVL 140 (143)
T ss_dssp HHHHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCS------CSSCHHHHHHHHHCSSEEE
T ss_pred HHHHHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCee------eeeccHHHHHHHhCCCCEE
Confidence 44443332 34555555444 679999999999999999999984 33322 2356778999999999976
Q ss_pred EE
Q 043324 589 IL 590 (788)
Q Consensus 589 Il 590 (788)
|.
T Consensus 141 vv 142 (143)
T 3fdx_A 141 VV 142 (143)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=97.59 E-value=0.00056 Score=63.52 Aligned_cols=137 Identities=11% Similarity=0.083 Sum_probs=79.5
Q ss_pred ccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHH
Q 043324 607 LQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDV 686 (788)
Q Consensus 607 ~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~ 686 (788)
.++|++++=|.++.+.|+++|.++|++.+.+++++|+.+..... .. . ... . .-...+..++..++
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~-~~-------~-----~~~-~-~~~~~~~~~~~~~~ 69 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYH-TP-------A-----LDP-V-LSELLDAEAAHAKD 69 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCC-CG-------G-----GHH-H-HHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc-cc-------c-----ccc-c-cHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999998732111 00 0 000 0 00000112233445
Q ss_pred HHHHHHHhccCCC--ceEEEEEecCChHHHHHHHHh-h--cCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhh
Q 043324 687 YMDEFYKRYVSSG--QIGYVEKNLRDGAETLQALRD-I--GDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLA 761 (788)
Q Consensus 687 ~~~~~~~~~~~~~--~v~y~E~~v~~~~~~~~~i~~-~--~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~la 761 (788)
.++++.......+ ++.+. ....+..+ .|.+ . ..++||+|+|+++.. ++.+| =+|-+-+-+.
T Consensus 70 ~l~~~~~~~~~~g~~~~~~~-~~~g~~~~---~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl 135 (146)
T 3s3t_A 70 AMRQRQQFVATTSAPNLKTE-ISYGIPKH---TIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVV 135 (146)
T ss_dssp HHHHHHHHHTTSSCCCCEEE-EEEECHHH---HHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCcceEEE-EecCChHH---HHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHh
Confidence 6666666543221 33322 11223333 2222 2 257999999987532 12222 2676666666
Q ss_pred cCCCCCceeEEEEe
Q 043324 762 SMDFDIKSSVLVIQ 775 (788)
Q Consensus 762 s~d~~~~~SvLVvQ 775 (788)
.. ++..||||.
T Consensus 136 ~~---~~~pVlvV~ 146 (146)
T 3s3t_A 136 DH---APCNVIVIR 146 (146)
T ss_dssp HH---CSSEEEEEC
T ss_pred cc---CCCCEEEeC
Confidence 54 457899873
No 15
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.58 E-value=8.9e-05 Score=71.07 Aligned_cols=136 Identities=10% Similarity=0.110 Sum_probs=79.8
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEE--EeeecCccccccccccccccCCCCccCCCccCCCcccchhHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLM--HLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEA 511 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~al--hlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a 511 (788)
-|||+|+.+.+.....++.+..+.. .+ ..++++ |+++........ -... . + ..++.....+..+ +.
T Consensus 18 ~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~-~~~~---~-~-~~~~~~~~~~~~l---~~ 85 (163)
T 1tq8_A 18 KTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAAD-ILKD---E-S-YKVTGTAPIYEIL---HD 85 (163)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC--------------------------CCTHHHHH---HH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCccccccc-cccc---H-H-HHHHHHHHHHHHH---HH
Confidence 4899999888877777887777765 33 467888 877643220000 0000 0 0 0000111122333 22
Q ss_pred HHhhhcCCceE-EEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 512 VDIFSSETKIF-VRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 512 f~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
+.......++. ++..... .+..+.|++.|++.++|+|+||.|++....+ ..++++-++|++++||+|-|.
T Consensus 86 ~~~~~~~~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~------~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 86 AKERAHNAGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAG------RLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp HHHHHHTTTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHH------HHTBBHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccc------eeeccHHHHHHHhCCCCEEEE
Confidence 22222334565 6655443 3679999999999999999999987644322 234566899999999998665
No 16
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.53 E-value=0.00096 Score=61.30 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=36.7
Q ss_pred cEEEEEccCCccHHHHHHHHHHHh-hCCceEEEEEEcccC
Q 043324 608 QSVATLFFGGPDDREAIACSKRLA-MHHHLNLTVIRFLPS 646 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma-~~~~v~ltv~r~~~~ 646 (788)
++|++++=|.++.+.|+++|.++| ++.+.+++++|+.+.
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~ 41 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPE 41 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecC
Confidence 589999999999999999999999 999999999999873
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.48 E-value=4e-05 Score=72.53 Aligned_cols=136 Identities=12% Similarity=0.132 Sum_probs=80.9
Q ss_pred eEEEEEEe--CCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHH
Q 043324 434 LRMICCVY--KPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEA 511 (788)
Q Consensus 434 lriLvcv~--~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a 511 (788)
-|||+|+. +.+.....++.+..+.... .-.++++|+++..... . ...... + ..++.....+..+ +.
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~-~----~~~~~~-~-~~~~~~~~~~~~l---~~ 83 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDIN-I----FDSLTP-S-KIQAKRKHVEDVV---AE 83 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTT-C----CCSSHH-H-HHHHHHHHHHHHH---HH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCcc-c----cccCCH-H-HHHHHHHHHHHHH---HH
Confidence 37999998 8877777777666665432 2478999998865322 0 000000 0 0000000112222 22
Q ss_pred HHhhhcCCce-EEEEEEEeeCCCChhHHHHHH-HhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEE
Q 043324 512 VDIFSSETKI-FVRQIKAVSSFPTMYEDVCSQ-AEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGI 589 (788)
Q Consensus 512 f~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~~-A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgI 589 (788)
+....+..++ .++.....+ .+..+.|++. |++.++|+|++|.|++...+ .+ ++++-++|++++||+|-|
T Consensus 84 ~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~------~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 84 YVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KI------AGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SS------CSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHcCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-ee------ecchHHHHHHhCCCCEEE
Confidence 2222222345 355555552 3678999999 99999999999999775443 22 455688999999999765
Q ss_pred E
Q 043324 590 L 590 (788)
Q Consensus 590 l 590 (788)
.
T Consensus 155 V 155 (156)
T 3fg9_A 155 V 155 (156)
T ss_dssp E
T ss_pred e
Confidence 3
No 18
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.45 E-value=0.00053 Score=63.08 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=76.5
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHHH
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDVY 687 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~ 687 (788)
++|++++=|.++++.|+++|.++|+..+.+++++|+.+... . ... . .. .++ ..+..++.-++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~-~-~~~---~-~~-----~~~------~~~~~~~~~~~~ 65 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVP-D-YLG---E-PF-----FEE------ALRRRLERAEGV 65 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCC-c-ccc---c-cc-----hHH------HHHHHHHHHHHH
Confidence 58999999999999999999999999999999999986211 0 000 0 00 000 001112333456
Q ss_pred HHHHHHhccCCCceEEEEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcCCCC
Q 043324 688 MDEFYKRYVSSGQIGYVEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASMDFD 766 (788)
Q Consensus 688 ~~~~~~~~~~~~~v~y~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~ 766 (788)
++++..+ .+-+++.+. ....+..+ +.+..++ .++||+|+|++++. ++.++ =+|-+.+-+...
T Consensus 66 l~~~~~~-~g~~~~~~~-~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~--- 128 (137)
T 2z08_A 66 LEEARAL-TGVPKEDAL-LLEGVPAEAILQAARA--EKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE--- 128 (137)
T ss_dssp HHHHHHH-HCCCGGGEE-EEESSHHHHHHHHHHH--TTCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH---
T ss_pred HHHHHHH-cCCCccEEE-EEecCHHHHHHHHHHH--cCCCEEEECCCCCc------hhhhh----hhccHHHHHHhc---
Confidence 6666654 111133332 22233333 2232332 47999999998542 12221 267666666655
Q ss_pred CceeEEEE
Q 043324 767 IKSSVLVI 774 (788)
Q Consensus 767 ~~~SvLVv 774 (788)
++.+||||
T Consensus 129 ~~~pVlvv 136 (137)
T 2z08_A 129 APCPVLLV 136 (137)
T ss_dssp CSSCEEEE
T ss_pred CCCCEEEe
Confidence 45789987
No 19
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.45 E-value=7.5e-05 Score=68.95 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=77.3
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHHh
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVDI 514 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~~ 514 (788)
|||+|+.+.+.....++.+..+.... ...++++|+++..... .... ..+.. .+ ...+.. .+.++.
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~------~~~~-~~~~~--~~-~~~~~~---~~~l~~ 68 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPDY------LGEP-FFEEA--LR-RRLERA---EGVLEE 68 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECC-----------------------C-HHHHHH---HHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCCCcc------cccc-chHHH--HH-HHHHHH---HHHHHH
Confidence 79999988877777777666665432 2478999988632100 0000 00000 00 000111 133333
Q ss_pred hhcCCce-EEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 515 FSSETKI-FVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 515 ~~~~~~v-~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
+.+..++ .++.... . .+..+.|++.|++.++|+|++|.|++....+. .++++-++|++++||+|-|.
T Consensus 69 ~~~~~g~~~~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 69 ARALTGVPKEDALLL-E--GVPAEAILQAARAEKADLIVMGTRGLGALGSL------FLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHCCCGGGEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCS------SSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHcCCCccEEEEE-e--cCHHHHHHHHHHHcCCCEEEECCCCCchhhhh------hhccHHHHHHhcCCCCEEEe
Confidence 3221233 3333332 2 46899999999999999999999976543322 35677899999999998653
No 20
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=97.45 E-value=0.00029 Score=66.83 Aligned_cols=126 Identities=8% Similarity=0.021 Sum_probs=77.1
Q ss_pred cEEEEEccC-CccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHH
Q 043324 608 QSVATLFFG-GPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDV 686 (788)
Q Consensus 608 ~~i~v~f~G-G~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~ 686 (788)
++|++++=| .+..+.|+++|.++|+..+.+++++++.+.+... . +..++..++
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~----------------~----------~~~~~~~~~ 78 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT----------------K----------DEDIIEAKE 78 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS----------------C----------HHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc----------------c----------HHHHHHHHH
Confidence 689999999 9999999999999999999999999998632100 0 011222344
Q ss_pred HHHHHHHhccC-CCceEEEEEec--CChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhc
Q 043324 687 YMDEFYKRYVS-SGQIGYVEKNL--RDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLAS 762 (788)
Q Consensus 687 ~~~~~~~~~~~-~~~v~y~E~~v--~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las 762 (788)
.++++...... +..+.. +..+ .+..+ +++..++ .++||+|+|+++.. ++.+ -=+|-+-+-+..
T Consensus 79 ~l~~~~~~~~~~g~~~~~-~~~v~~G~~~~~I~~~a~~--~~~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~ 145 (155)
T 3dlo_A 79 TLSWAVSIIRKEGAEGEE-HLLVRGKEPPDDIVDFADE--VDAIAIVIGIRKRS------PTGK----LIFGSVARDVIL 145 (155)
T ss_dssp HHHHHHHHHHHTTCCEEE-EEEESSSCHHHHHHHHHHH--TTCSEEEEECCEEC------TTSC----EECCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceE-EEEecCCCHHHHHHHHHHH--cCCCEEEECCCCCC------CCCC----EEeccHHHHHHH
Confidence 55555443322 223333 2223 33333 2222232 36999999987532 1221 126766666665
Q ss_pred CCCCCceeEEEEe
Q 043324 763 MDFDIKSSVLVIQ 775 (788)
Q Consensus 763 ~d~~~~~SvLVvQ 775 (788)
. ++..||||.
T Consensus 146 ~---a~~PVLvVr 155 (155)
T 3dlo_A 146 K---ANKPVICIK 155 (155)
T ss_dssp H---CSSCEEEEC
T ss_pred h---CCCCEEEeC
Confidence 4 567899884
No 21
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.43 E-value=0.00011 Score=67.72 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=81.9
Q ss_pred EEEEEEeCCCCchhHHHHHHHhc-CCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCc-cCCCcccchhHHH
Q 043324 435 RMICCVYKPRNASGQLGLCSALR-GKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDE-YGGNDVMEINEAV 512 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~-~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~af 512 (788)
|||+++.+.++....+..+..+. ... ...++++|+++.............+.. ++.. ...+..+ +.+
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l---~~~ 71 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDA--DCTLTLIHVKPEFMLYGEAVLAAYDEI------EMKEEEKAKLLT---QKF 71 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEEEEEECCCCCCHHHHHHHHHHH------HHHHHHHHHHHH---HHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCC--CCEEEEEEEecCCCcccccccCcHHHH------HHHHHHHHHHHH---HHH
Confidence 79999988888788888888887 443 357899999887543211000000000 0000 1112222 333
Q ss_pred HhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 513 DIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 513 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
.......++.++...... +..+.|++.|+ ++|+|++|.|++....+.+ + ++-++|++++||+|-|.
T Consensus 72 ~~~~~~~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-G------s~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 72 STFFTEKGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-A------SHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHTTTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-C------CTTCHHHHHCSSCEEEE
T ss_pred HHHHHHCCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-C------cHHHHHHhcCCCCEEEe
Confidence 322234556666555444 67999999999 9999999999876554433 2 23579999999997653
No 22
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.43 E-value=7.8e-05 Score=69.88 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=74.7
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD 513 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~ 513 (788)
-|||+|+.+.++....++.+..+....+ ..++++|+++..... .+ ...... .....+......++.. +.++
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~-~~--~~~~~~-~~~~~~~~~~~~~~~~---~~l~ 77 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMP-DT--PYGTAI-PLDTETTYDAMLDVEK---QKLS 77 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC-----------CTTCC-CSSSCCCHHHHHHHHH---HHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCcccc-cc--cccccc-CcCHHHHHHHHHHHHH---HHHH
Confidence 3799999998888888777777765433 578999998754221 00 010000 0000000000001111 3334
Q ss_pred hhhcCCceE-EEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 514 IFSSETKIF-VRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 514 ~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
.+.+..++. ++.... . .+..+.|++.|++.++|+|++|.|++.... . .++++-++|++++||+|-|.
T Consensus 78 ~~~~~~~~~~~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~------~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 78 QIGNTLGIDPAHRWLV-W--GEPREEIIRIAEQENVDLIVVGSHGRHGLA-L------LLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHHHHTCCGGGEEEE-E--SCHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEE
T ss_pred HHHHHcCCCcceEEEe-c--CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-e------EecchHHHHHHhCCCCEEEE
Confidence 333222222 122222 2 367899999999999999999998765433 2 24556889999999998665
No 23
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.41 E-value=0.00036 Score=64.87 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=36.3
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEccc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLP 645 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~ 645 (788)
++|++++=|.+..+.|+++|.++|++.+.+++++|+.+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 40 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFK 40 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 58999999999999999999999999999999999986
No 24
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.41 E-value=0.00098 Score=61.59 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=36.7
Q ss_pred cEEEEEccCCcc--HHHHHHHHHHHhhCCceEEEEEEcccC
Q 043324 608 QSVATLFFGGPD--DREAIACSKRLAMHHHLNLTVIRFLPS 646 (788)
Q Consensus 608 ~~i~v~f~GG~D--DreAL~~a~rma~~~~v~ltv~r~~~~ 646 (788)
++|++++=|.++ .+.|+++|.++|++.+.+++++|+.+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~ 42 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPS 42 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence 589999999999 999999999999999999999999873
No 25
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.38 E-value=0.00045 Score=63.83 Aligned_cols=131 Identities=8% Similarity=0.106 Sum_probs=77.6
Q ss_pred EEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeec-CccccccccccccccCCCCccCCCccCCCcccchhHHHH
Q 043324 435 RMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVEL-PKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAVD 513 (788)
Q Consensus 435 riLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af~ 513 (788)
|||+++.+.++....+..+..+.... ...++++|+.+- +... +. .......+.. + ...++.. +.++
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~-~~-~~~~~~~~~~-----~-~~~~~~~---~~l~ 70 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKRH--DAKLSIIHVDVNFSDLY-TG-LIDVNMSSMQ-----D-RISTETQ---KALL 70 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEECCGGGC-CC-CEEHHHHHHT-----T-CCCCHHH---HHHH
T ss_pred eEEEEecCchhhHHHHHHHHHHHHhc--CCEEEEEEEecCchhhh-cc-ccccchHHHH-----H-HHHHHHH---HHHH
Confidence 79999988888777777776665432 247899999843 2111 10 0000000000 0 0011122 3444
Q ss_pred hhhcCCceEE-EEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 514 IFSSETKIFV-RQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 514 ~~~~~~~v~v-~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
.+.+..++.+ +..... .+..+.|++.|++.++|+|++|.| +.... .++++-++|++++||+|-|.
T Consensus 71 ~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~--------~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 71 DLAESVDYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWS--------KLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HHHHHSSSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHH--------HHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHcCCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhh--------hhcchHHHHHhcCCCCEEEe
Confidence 4432223333 222222 357899999999999999999988 53221 14678899999999998775
No 26
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.36 E-value=0.00026 Score=68.34 Aligned_cols=146 Identities=10% Similarity=0.123 Sum_probs=76.1
Q ss_pred eEEEEEEeCCC---------CchhHHHHHHHhcCCC-CCCCceeEEEeeecCccccccc-cccccccCCCCccCCCccCC
Q 043324 434 LRMICCVYKPR---------NASGQLGLCSALRGKQ-GAAITPYLMHLVELPKRRKKKN-LMYHQLQDGDQFSDEDEYGG 502 (788)
Q Consensus 434 lriLvcv~~~~---------~~~~li~L~~~l~~~~-~sp~~v~alhlvel~~r~~~~~-~~~~~~~~~~~~~~~~~~~~ 502 (788)
-|||+|+.+.+ .....+..+..+.... .....++++|+++......... ..+..........++...+.
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 48999998887 6566677666643221 1245789999876432110000 00000000000000000001
Q ss_pred CcccchhHHHHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhcc
Q 043324 503 NDVMEINEAVDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRH 582 (788)
Q Consensus 503 ~~i~~~~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~ 582 (788)
++.+ +.+.......++.++..... .+..+.|++.|++.++|+|+||.|++....+. .++++-++|+++
T Consensus 86 ~~~l---~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~------~~Gsva~~vl~~ 153 (175)
T 2gm3_A 86 LHLL---EFFVNKCHEIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKV------FVGTVSAFCVKH 153 (175)
T ss_dssp HHHH---HHHHHHHHHHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHH
T ss_pred HHHH---HHHHHHHHHCCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhh------hcCchHHHHHhC
Confidence 1122 22221112234666554443 36799999999999999999999876543322 356678999999
Q ss_pred CCCceEEEe
Q 043324 583 APCSVGILV 591 (788)
Q Consensus 583 apCsVgIlV 591 (788)
+||+|-|.-
T Consensus 154 a~~pVlvv~ 162 (175)
T 2gm3_A 154 AECPVMTIK 162 (175)
T ss_dssp CSSCEEEEE
T ss_pred CCCCEEEEc
Confidence 999987753
No 27
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.36 E-value=0.001 Score=63.46 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=77.6
Q ss_pred ccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEE--EcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccH
Q 043324 607 LQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVI--RFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRD 684 (788)
Q Consensus 607 ~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d 684 (788)
.++|++++=|.+..+.|+++|.++|+ .+.+++++ ++++.+...... . . ..+. . .+..++..
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~----~--~-----~~~~---~--~~~~~~~~ 79 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAAD----I--L-----KDES---Y--KVTGTAPI 79 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------------CCTH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccccc----c--c-----ccHH---H--HHHHHHHH
Confidence 37999999999999999999999999 99999999 887522110000 0 0 0000 0 01122334
Q ss_pred HHHHHHHHHhccCC-Cc-eEEEEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhh
Q 043324 685 DVYMDEFYKRYVSS-GQ-IGYVEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLA 761 (788)
Q Consensus 685 ~~~~~~~~~~~~~~-~~-v~y~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~la 761 (788)
++.++++....... -+ +.+. ....+..+ +++..+ ..++||+|+|++++.. +.+| =+|-+-+-+.
T Consensus 80 ~~~l~~~~~~~~~~gv~~v~~~-v~~G~~~~~I~~~a~--~~~~DLIV~G~~g~~~------~~~~----~lGSva~~vl 146 (163)
T 1tq8_A 80 YEILHDAKERAHNAGAKNVEER-PIVGAPVDALVNLAD--EEKADLLVVGNVGLST------IAGR----LLGSVPANVS 146 (163)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEE-EECSSHHHHHHHHHH--HTTCSEEEEECCCCCS------HHHH----HTBBHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEE-EecCCHHHHHHHHHH--hcCCCEEEECCCCCCc------ccce----eeccHHHHHH
Confidence 56666666544321 12 3332 22233322 222222 2569999999985421 2111 2676666666
Q ss_pred cCCCCCceeEEEEeeccC
Q 043324 762 SMDFDIKSSVLVIQQHRH 779 (788)
Q Consensus 762 s~d~~~~~SvLVvQq~~~ 779 (788)
.. ++.+||||.....
T Consensus 147 ~~---a~~PVlvV~~~~~ 161 (163)
T 1tq8_A 147 RR---AKVDVLIVHTTEG 161 (163)
T ss_dssp HH---TTCEEEEECCC--
T ss_pred Hh---CCCCEEEEeCCCC
Confidence 54 4679999976543
No 28
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.32 E-value=0.00068 Score=63.30 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=76.3
Q ss_pred ccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCc-ccccCCCCCCCCCCCCcchhhhhccCCCccccHH
Q 043324 607 LQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEE-DVNVSSSTASPHFNLGNEVFMSIARRNPENKRDD 685 (788)
Q Consensus 607 ~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~ 685 (788)
.++|++++=|.++.+.|+++|.++|++.+.+++++|+.+...... .. ...... ..++ ..+..++.-+
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~----~~~~~~--~~~~------~~~~~~~~~~ 73 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPY----GTAIPL--DTET------TYDAMLDVEK 73 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------C----TTCCCS--SSCC------CHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccccccc----ccccCc--CHHH------HHHHHHHHHH
Confidence 369999999999999999999999999999999999986321100 00 000000 0000 0001122334
Q ss_pred HHHHHHHHhccCCCceEEEEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcCC
Q 043324 686 VYMDEFYKRYVSSGQIGYVEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASMD 764 (788)
Q Consensus 686 ~~~~~~~~~~~~~~~v~y~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d 764 (788)
+.++++..+... +.+.+ +....+..+ +++..++ .++||+|+|++++.. | + --+|-+-+-+...
T Consensus 74 ~~l~~~~~~~~~-~~~~~-~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~~---------~-~-~~~Gs~~~~vl~~- 137 (150)
T 3tnj_A 74 QKLSQIGNTLGI-DPAHR-WLVWGEPREEIIRIAEQ--ENVDLIVVGSHGRHG---------L-A-LLLGSTANSVLHY- 137 (150)
T ss_dssp HHHHHHHHHHTC-CGGGE-EEEESCHHHHHHHHHHH--TTCSEEEEEEC-------------------CCCHHHHHHHH-
T ss_pred HHHHHHHHHcCC-CcceE-EEecCCHHHHHHHHHHH--cCCCEEEEecCCCCC---------c-C-eEecchHHHHHHh-
Confidence 556666555421 21111 222233333 2222222 479999999875421 2 1 3467666666654
Q ss_pred CCCceeEEEEeec
Q 043324 765 FDIKSSVLVIQQH 777 (788)
Q Consensus 765 ~~~~~SvLVvQq~ 777 (788)
++.+||||...
T Consensus 138 --~~~pVlvv~~~ 148 (150)
T 3tnj_A 138 --AKCDVLAVRLR 148 (150)
T ss_dssp --CSSEEEEEECC
T ss_pred --CCCCEEEEeCC
Confidence 45799999754
No 29
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.26 E-value=0.0011 Score=62.68 Aligned_cols=149 Identities=11% Similarity=0.085 Sum_probs=79.8
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCC----CCcccccCCCCCCCCCCCCcchhhhhccCCCcccc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEF----GEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKR 683 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 683 (788)
++|++++=|.++.+.|+++|.++|+..+.+++++|+.+... .............. .+..... ...+..++.
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~ 80 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNK----SVEEFEN-ELKNKLTEE 80 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC---------------------CHHHHH-HHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCcccccccccccccccccccc----chhhhHH-HHHHHHHHH
Confidence 69999999999999999999999999999999999986310 00000000000000 0000000 000011122
Q ss_pred HHHHHHHHHHhccCCCceEEEEEe-cCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhh
Q 043324 684 DDVYMDEFYKRYVSSGQIGYVEKN-LRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLA 761 (788)
Q Consensus 684 d~~~~~~~~~~~~~~~~v~y~E~~-v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~la 761 (788)
.++.++++...... ..+.+.-++ ..+..+ +++..++ .++||+|+|++++. ++.+| =+|-+.+-+.
T Consensus 81 ~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~~~I~~~a~~--~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl 147 (162)
T 1mjh_A 81 AKNKMENIKKELED-VGFKVKDIIVVGIPHEEIVKIAED--EGVDIIIMGSHGKT------NLKEI----LLGSVTENVI 147 (162)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEEEEECHHHHHHHHHHH--TTCSEEEEESCCSS------CCTTC----SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCceEEEEcCCCHHHHHHHHHHH--cCCCEEEEcCCCCC------Cccce----EecchHHHHH
Confidence 34556666554322 123322222 233332 2233332 47999999997542 22222 3787777777
Q ss_pred cCCCCCceeEEEEeec
Q 043324 762 SMDFDIKSSVLVIQQH 777 (788)
Q Consensus 762 s~d~~~~~SvLVvQq~ 777 (788)
.. ++.+||||...
T Consensus 148 ~~---~~~pVlvv~~~ 160 (162)
T 1mjh_A 148 KK---SNKPVLVVKRK 160 (162)
T ss_dssp HH---CCSCEEEECCC
T ss_pred Hh---CCCCEEEEeCC
Confidence 65 46799999643
No 30
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.0016 Score=62.15 Aligned_cols=147 Identities=10% Similarity=-0.015 Sum_probs=80.1
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCC---ccccH
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNP---ENKRD 684 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~~~d 684 (788)
++|++++=|.++.+.|+++|.++|+..+.+++++|+.+... . ... ...-... +.... ...++. .++..
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-~-~~~-~~~~~~~-~~~~~-----~~~~~~~~~~~~~~ 76 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGT-L-EEL-MDGYSFF-YDNAE-----IELKDIKEKLKEEA 76 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTG-G-GCC-C------------------CCTTSHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcc-c-ccc-ccccccc-ccccc-----ccHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999986321 1 000 0000000 00000 000011 12223
Q ss_pred HHHHHHHHHhccC-CCceEE-EEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhh
Q 043324 685 DVYMDEFYKRYVS-SGQIGY-VEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLA 761 (788)
Q Consensus 685 ~~~~~~~~~~~~~-~~~v~y-~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~la 761 (788)
++.++++...... +-++.+ .+....+..+ +++..++ .++||+|+|++++. ++.+| =+|-+-+-+.
T Consensus 77 ~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~--~~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl 144 (170)
T 2dum_A 77 SRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEE--ENVSLIILPSRGKL------SLSHE----FLGSTVMRVL 144 (170)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHH--TTCSEEEEESCCCC------C--TT----CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHH--cCCCEEEECCCCCC------ccccc----eechHHHHHH
Confidence 4556666554321 223433 1222233332 2232332 47999999998542 12222 3677776666
Q ss_pred cCCCCCceeEEEEeecc
Q 043324 762 SMDFDIKSSVLVIQQHR 778 (788)
Q Consensus 762 s~d~~~~~SvLVvQq~~ 778 (788)
.. ++.+||||....
T Consensus 145 ~~---~~~PVlvv~~~~ 158 (170)
T 2dum_A 145 RK---TKKPVLIIKEVD 158 (170)
T ss_dssp HH---CSSCEEEECCCC
T ss_pred Hh---CCCCEEEEccCC
Confidence 55 567999997654
No 31
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.16 E-value=0.0014 Score=60.35 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=77.5
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHHH
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDVY 687 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~ 687 (788)
++|++++=|.++++.|+++|.++|+..+.+++++|+.+...... . . ....... ...+..++.-++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~-------~-----~~~~~~~-~~~~~~~~~~~~~ 68 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY-T-------G-----LIDVNMS-SMQDRISTETQKA 68 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC-C-------C-----CEEHHHH-HHTTCCCCHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhh-c-------c-----ccccchH-HHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999984211100 0 0 0000000 0001112223456
Q ss_pred HHHHHHhccCCCceEEEEEecCChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcCCCC
Q 043324 688 MDEFYKRYVSSGQIGYVEKNLRDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASMDFD 766 (788)
Q Consensus 688 ~~~~~~~~~~~~~v~y~E~~v~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d~~ 766 (788)
++++..+... .+...+....+..+ +++..++ .++||+|+|++ +.. | ..+|-+.+-+...
T Consensus 69 l~~~~~~~~~--~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~-~~~---------~---~~lgs~~~~vl~~--- 128 (141)
T 1jmv_A 69 LLDLAESVDY--PISEKLSGSGDLGQVLSDAIEQ--YDVDLLVTGHH-QDF---------W---SKLMSSTRQVMNT--- 128 (141)
T ss_dssp HHHHHHHSSS--CCCCEEEEEECHHHHHHHHHHH--TTCCEEEEEEC-CCC---------H---HHHHHHHHHHHTT---
T ss_pred HHHHHHHcCC--CceEEEEecCCHHHHHHHHHHh--cCCCEEEEeCC-Cch---------h---hhhcchHHHHHhc---
Confidence 6666655321 11111122233333 3332332 46999999988 421 1 1256666666644
Q ss_pred CceeEEEEeec
Q 043324 767 IKSSVLVIQQH 777 (788)
Q Consensus 767 ~~~SvLVvQq~ 777 (788)
++.+||||...
T Consensus 129 ~~~pVlvv~~~ 139 (141)
T 1jmv_A 129 IKIDMLVVPLR 139 (141)
T ss_dssp CCSEEEEEECC
T ss_pred CCCCEEEeeCC
Confidence 56799999754
No 32
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=96.97 E-value=0.0012 Score=62.28 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=78.2
Q ss_pred ccEEEEEcc--CCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccH
Q 043324 607 LQSVATLFF--GGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRD 684 (788)
Q Consensus 607 ~~~i~v~f~--GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d 684 (788)
.++|++++= |.++.+.|+++|.++|+..+.+++++|+.+... .... . ..++.. .+..++..
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~-~~~~-------~----~~~~~~-----~~~~~~~~ 77 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESED-INIF-------D----SLTPSK-----IQAKRKHV 77 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCC-TTCC-------C----SSHHHH-----HHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCC-cccc-------c----cCCHHH-----HHHHHHHH
Confidence 479999999 999999999999999999999999999987321 1000 0 000000 01122333
Q ss_pred HHHHHHHHHhccC-C-CceEEEEEecCChHHH-HHH-HHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhh
Q 043324 685 DVYMDEFYKRYVS-S-GQIGYVEKNLRDGAET-LQA-LRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLL 760 (788)
Q Consensus 685 ~~~~~~~~~~~~~-~-~~v~y~E~~v~~~~~~-~~~-i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~l 760 (788)
++.+++++..... + +++.+.-..-.+..+. ++. .+ ..++||+|+|++++.. + +. =+|-+-+-+
T Consensus 78 ~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~--~~~~DlIV~G~~g~~~------~----~~-~~Gs~~~~v 144 (156)
T 3fg9_A 78 EDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIP--EFKPDLLVTGADTEFP------H----SK-IAGAIGPRL 144 (156)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHH--HHCCSEEEEETTCCCT------T----SS-SCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHH--hcCCCEEEECCCCCCc------c----ce-eecchHHHH
Confidence 4556666544322 1 1233221111333332 222 22 2469999999986421 2 11 377777777
Q ss_pred hcCCCCCceeEEEEe
Q 043324 761 ASMDFDIKSSVLVIQ 775 (788)
Q Consensus 761 as~d~~~~~SvLVvQ 775 (788)
... ++.+||||.
T Consensus 145 l~~---a~~PVlvV~ 156 (156)
T 3fg9_A 145 ARK---APISVIVVR 156 (156)
T ss_dssp HHH---CSSEEEEEC
T ss_pred HHh---CCCCEEEeC
Confidence 655 567899873
No 33
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=96.65 E-value=0.002 Score=59.18 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=36.6
Q ss_pred ccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcc-c
Q 043324 607 LQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFL-P 645 (788)
Q Consensus 607 ~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~-~ 645 (788)
.++|++++=|.++.+.|+++|.++|+..+.+++++|+. +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 36999999999999999999999999999999999998 5
No 34
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=96.59 E-value=0.0014 Score=60.21 Aligned_cols=129 Identities=10% Similarity=0.010 Sum_probs=74.9
Q ss_pred eEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEee-ec-CccccccccccccccCCCCccCCCccCCCcccchhHH
Q 043324 434 LRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLV-EL-PKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEA 511 (788)
Q Consensus 434 lriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlv-el-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a 511 (788)
-|||+++.+.+.....+..+..+.... ...++++|++ +. +... . .............++.....++.+ .++
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l--~~~ 77 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKL--GAELDILAVLEDVYNLER-A--NVTFGLPFPPEIKEESKKRIERRL--REV 77 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHH-H--HHHHCCCCCTHHHHHHHHHHHHHH--HHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHc--CCeEEEEEEecccccccc-c--ccccCCCCChHHHHHHHHHHHHHH--HHH
Confidence 389999998888888888877777543 3578999998 53 1000 0 000000000000000000112222 123
Q ss_pred HHhh-hcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEE
Q 043324 512 VDIF-SSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGI 589 (788)
Q Consensus 512 f~~~-~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgI 589 (788)
+.+ ....+ .++..... .+..+.|++.|++.++|+|++|.|++ ++-++|++++||+|-|
T Consensus 78 -~~~~~~~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 78 -WEKLTGSTE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp -HHHHHSCCC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEE
T ss_pred -HHHhhccCC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEe
Confidence 332 22223 44433332 46899999999999999999998854 2357899999999765
No 35
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=96.55 E-value=0.0039 Score=64.24 Aligned_cols=148 Identities=15% Similarity=0.099 Sum_probs=79.5
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhcc--CCCccccHH
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIAR--RNPENKRDD 685 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~d~ 685 (788)
++|++++=|.+.++.|+++|.++|++.+.+++++|+.+... .... ........ .++ .....+ .+..++.-+
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~-~~~~-~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~ 73 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRL-ARIP-ELLDFGAL----TVP-VPVLRTELERALALRGE 73 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHH-HTHH-HHC-----------C-HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-cccc-cccCchHH----HHH-HHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999985211 0000 00000000 000 000000 000112233
Q ss_pred HHHHHHHHhccC-CCceEEEEEecCChHHHHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhcCC
Q 043324 686 VYMDEFYKRYVS-SGQIGYVEKNLRDGAETLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLASMD 764 (788)
Q Consensus 686 ~~~~~~~~~~~~-~~~v~y~E~~v~~~~~~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las~d 764 (788)
+.++++...... +-++.+. ....+..+ .|.+...++||+|+|+++... ++.+ .-+|-+-+-+...
T Consensus 74 ~~l~~~~~~~~~~g~~~~~~-~~~g~~~~---~I~~~~~~~dliV~G~~g~~~-----~~~~----~~~Gs~~~~v~~~- 139 (268)
T 3ab8_A 74 AVLERVRQSALAAGVAVEAV-LEEGVPHE---AILRRARAADLLVLGRSGEAH-----GDGF----GGLGSTADRVLRA- 139 (268)
T ss_dssp HHHHHHHHHHHHTTCCEEEE-EEEECHHH---HHHHHHTTCSEEEEESSCTTS-----CTTC----CSCCHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCCeEEE-EecCCHHH---HHHhhccCCCEEEEeccCCCc-----cccc----cccchhHHHHHHh-
Confidence 556665554322 2223332 11223333 333336789999999875320 1222 2367776766654
Q ss_pred CCCceeEEEEeecc
Q 043324 765 FDIKSSVLVIQQHR 778 (788)
Q Consensus 765 ~~~~~SvLVvQq~~ 778 (788)
++.+||||....
T Consensus 140 --a~~PVlvv~~~~ 151 (268)
T 3ab8_A 140 --SPVPVLLAPGEP 151 (268)
T ss_dssp --CSSCEEEECSSC
T ss_pred --CCCCEEEECCCC
Confidence 567999998653
No 36
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=96.44 E-value=0.0046 Score=65.35 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=81.3
Q ss_pred ccEEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhhccCCCccccHHH
Q 043324 607 LQSVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSIARRNPENKRDDV 686 (788)
Q Consensus 607 ~~~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~ 686 (788)
.++|+++.=|.++++.|+++|.++|++.+.+++++|+++ +... .. .... ..+.. . +..++..++
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~-~~~~-~~----~~~~-----~~~~~---~--~~~~~~~~~ 82 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVS-PEVA-TW----LEVP-----LPPGV---L--RWQQDHGRH 82 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECC-CCCC-CT----TCCC-----CCHHH---H--HHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-Cccc-cc----ccCC-----CCchh---h--HHHHHHHHH
Confidence 479999999999999999999999999999999999986 2111 00 0000 00000 0 011122234
Q ss_pred HHHHHHHhccC----CCceEEEEEecCChHHHHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCccchhhhhhhc
Q 043324 687 YMDEFYKRYVS----SGQIGYVEKNLRDGAETLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPELGVVGDLLAS 762 (788)
Q Consensus 687 ~~~~~~~~~~~----~~~v~y~E~~v~~~~~~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~las 762 (788)
.+++++..... ...+.+.-++. .|. ....|.+...++||+|+|+++.. ++.+ .=+|-..+-+..
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~I~~~a~~~DliV~G~~g~~------~~~~----~~~Gs~~~~vl~ 150 (309)
T 3cis_A 83 LIDDALKVVEQASLRAGPPTVHSEIV-PAA-AVPTLVDMSKDAVLMVVGCLGSG------RWPG----RLLGSVSSGLLR 150 (309)
T ss_dssp HHHHHHHHHHHHCSSSCCSCEEEEEE-SSC-HHHHHHHHGGGEEEEEEESSCTT------CCTT----CCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCceEEEEEe-cCC-HHHHHHHHhcCCCEEEECCCCCc------cccc----cccCcHHHHHHH
Confidence 44544433211 11233322222 232 23444444458999999997532 1222 236777777765
Q ss_pred CCCCCceeEEEEeecc
Q 043324 763 MDFDIKSSVLVIQQHR 778 (788)
Q Consensus 763 ~d~~~~~SvLVvQq~~ 778 (788)
. ++..||||....
T Consensus 151 ~---~~~PVlvv~~~~ 163 (309)
T 3cis_A 151 H---AHCPVVIIHDED 163 (309)
T ss_dssp H---CSSCEEEECTTC
T ss_pred h---CCCCEEEEcCCc
Confidence 5 567999998664
No 37
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0038 Score=65.40 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=77.5
Q ss_pred ceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhHHH
Q 043324 433 ELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINEAV 512 (788)
Q Consensus 433 elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~af 512 (788)
--||++|..+.+.....++.+..+.... ...++++|+.+-.. .++.+ +.+
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~-------------------------~~~~l---~~~ 219 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKKT--GGELHIIHVSEDGD-------------------------KTADL---RVM 219 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEECSSSC-------------------------CHHHH---HHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhhc--CCEEEEEEEccCch-------------------------HHHHH---HHH
Confidence 3589999988766666666666554322 24678888875431 01112 222
Q ss_pred HhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEE
Q 043324 513 DIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGIL 590 (788)
Q Consensus 513 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIl 590 (788)
..+-+..++.++.... . .+..+.|++.|++.++|+|++|.+++....+ -.++++-+++++++||+|-|+
T Consensus 220 ~~~l~~~~~~~~~~~~-~--g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~------~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 220 EEVIGAEGIEVHVHIE-S--GTPHKAILAKREEINATTIFMGSRGAGSVMT------MILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHHHTTCCEEEEEE-C--SCHHHHHHHHHHHTTCSEEEEECCCCSCHHH------HHHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCcEEEEEe-c--CCHHHHHHHHHHhcCcCEEEEeCCCCCCccc------eeeCcHHHHHHhcCCCCEEEE
Confidence 2222223455554332 2 4789999999999999999999987654322 236677899999999998665
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=96.27 E-value=0.0029 Score=66.26 Aligned_cols=133 Identities=13% Similarity=0.070 Sum_probs=75.9
Q ss_pred ceEEEEEEeCCCC-------chhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcc
Q 043324 433 ELRMICCVYKPRN-------ASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDV 505 (788)
Q Consensus 433 elriLvcv~~~~~-------~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i 505 (788)
--||++++.+.+. ....++.+..+.... ...++++|+.+..... .. ... . .. .+ ...++.
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~-~~--~~~-~----~~--~~-~~~~~~ 200 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA--KATLHVISAHPSPMLS-SA--DPT-F----QL--SE-TIEARY 200 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEC------------C-H----HH--HH-HHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc--CCeEEEEEEecCcccc-cc--Cch-h----HH--HH-HHHHHH
Confidence 3489999988776 455556555554332 2578999998764322 00 000 0 00 00 000111
Q ss_pred cchhHHHHhhhcCCceE-EEEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCC
Q 043324 506 MEINEAVDIFSSETKIF-VRQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAP 584 (788)
Q Consensus 506 ~~~~~af~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~ap 584 (788)
. +.++.+.+..++. ++... .. .+..+.|++.|++.++|+|+||-|++....+. .++++-++|++++|
T Consensus 201 ~---~~l~~~~~~~g~~~~~~~v-~~--g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~------~~Gsv~~~vl~~~~ 268 (290)
T 3mt0_A 201 R---EACRTFQAEYGFSDEQLHI-EE--GPADVLIPRTAQKLDAVVTVIGTVARTGLSGA------LIGNTAEVVLDTLE 268 (290)
T ss_dssp H---HHHHHHHHHHTCCTTTEEE-EE--SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGC------CSCHHHHHHHTTCS
T ss_pred H---HHHHHHHHHcCCCcceEEE-ec--cCHHHHHHHHHHhcCCCEEEECCCCCcCCcce------ecchHHHHHHhcCC
Confidence 1 2333332222231 11112 22 36789999999999999999999987654432 35677899999999
Q ss_pred CceEEE
Q 043324 585 CSVGIL 590 (788)
Q Consensus 585 CsVgIl 590 (788)
|+|-|+
T Consensus 269 ~pVLvv 274 (290)
T 3mt0_A 269 SDVLVL 274 (290)
T ss_dssp SEEEEE
T ss_pred CCEEEE
Confidence 998765
No 39
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=96.26 E-value=0.037 Score=52.81 Aligned_cols=148 Identities=11% Similarity=0.125 Sum_probs=75.2
Q ss_pred ccEEEEEccCCc---------cHHHHHHHHHHHh-hC--CceEEEEEEcccCCCCCcccccCCCCCCCCCCCCcchhhhh
Q 043324 607 LQSVATLFFGGP---------DDREAIACSKRLA-MH--HHLNLTVIRFLPSEFGEEDVNVSSSTASPHFNLGNEVFMSI 674 (788)
Q Consensus 607 ~~~i~v~f~GG~---------DDreAL~~a~rma-~~--~~v~ltv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (788)
.++|++++=|.+ ..+.|+++|.+++ +. .+.+++++|+.+... . ... ... ... ...+.. .
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~-~-~~~-~~~--~~~--~~~~~~-~- 75 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDE-D-GFD-DVD--SIY--ASPEDF-R- 75 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC---------------CCC--CSHHHH-H-
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccc-c-ccc-ccc--ccc--CCHHHH-H-
Confidence 379999999999 8899999999987 44 689999999975211 0 000 000 000 000000 0
Q ss_pred ccCCCccccHHHHHHHHHHhccCCCceEEEEEec-CChHH-HHHHHHhhcCcccEEEEecCCCCCCCcccCCCCCCCCCc
Q 043324 675 ARRNPENKRDDVYMDEFYKRYVSSGQIGYVEKNL-RDGAE-TLQALRDIGDMYSLFIVGKGRRGCSPLTTGMSDWEECPE 752 (788)
Q Consensus 675 ~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~E~~v-~~~~~-~~~~i~~~~~~~dL~iVGr~~~~~s~~~~gl~~w~e~~e 752 (788)
...+..++..++.++++...... ..+.+.-++. .+..+ +++..++ .++||+|+|+++.. ++.+| =
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~~------~~~~~----~ 142 (175)
T 2gm3_A 76 DMRQSNKAKGLHLLEFFVNKCHE-IGVGCEAWIKTGDPKDVICQEVKR--VRPDFLVVGSRGLG------RFQKV----F 142 (175)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHH-HTCEEEEEEEESCHHHHHHHHHHH--HCCSEEEEEECCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCceEEEEecCCHHHHHHHHHHH--hCCCEEEEeCCCCC------hhhhh----h
Confidence 00011222234566666554321 1233322222 23222 2222232 36999999987532 12222 2
Q ss_pred cchhhhhhhcCCCCCceeEEEEeeccC
Q 043324 753 LGVVGDLLASMDFDIKSSVLVIQQHRH 779 (788)
Q Consensus 753 LG~iGd~las~d~~~~~SvLVvQq~~~ 779 (788)
+|-+-+-+... ++..||||.....
T Consensus 143 ~Gsva~~vl~~---a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 143 VGTVSAFCVKH---AECPVMTIKRNAD 166 (175)
T ss_dssp --CHHHHHHHH---CSSCEEEEECCGG
T ss_pred cCchHHHHHhC---CCCCEEEEcCCcC
Confidence 67666666655 4579999986543
No 40
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=96.21 E-value=0.0035 Score=66.41 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=46.1
Q ss_pred CChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEecCCC
Q 043324 533 PTMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDRGC 595 (788)
Q Consensus 533 ~~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdRg~ 595 (788)
.+..+.|++.|++.++|+|+||-|++....+ ..++++-++|++++||+|-|+-.+|+
T Consensus 252 g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~------~~~Gsv~~~vl~~~~~pVLvv~~~~~ 308 (319)
T 3olq_A 252 GLPEQVIPQVCEELNAGIVVLGILGRTGLSA------AFLGNTAEQLIDHIKCDLLAIKPDGF 308 (319)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCSCCSTHH------HHHHHHHHHHHTTCCSEEEEECCTTC
T ss_pred CCcHHHHHHHHHHhCCCEEEEeccCccCCcc------ccccHHHHHHHhhCCCCEEEECCCCC
Confidence 3568999999999999999999987754432 34788899999999999877644443
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=72.70 E-value=29 Score=35.66 Aligned_cols=223 Identities=14% Similarity=0.168 Sum_probs=126.6
Q ss_pred CCceEEEEEEeCCCCchhHHHHHHHhcCCCCCCCceeEEEeeecCccccccccccccccCCCCccCCCccCCCcccchhH
Q 043324 431 ESELRMICCVYKPRNASGQLGLCSALRGKQGAAITPYLMHLVELPKRRKKKNLMYHQLQDGDQFSDEDEYGGNDVMEINE 510 (788)
Q Consensus 431 ~~elriLvcv~~~~~~~~li~L~~~l~~~~~sp~~v~alhlvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 510 (788)
+-.-++|+..-.|.....++.++..+...+. .+.+.++..-..+. . . .++ + .
T Consensus 18 nWrP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~~~~-~-------------------l-~~q-l---~ 69 (294)
T 3g40_A 18 TWKANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNTDKE-N-------------------L-LSQ-L---P 69 (294)
T ss_dssp -CCCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC---CTT-C-------------------H-HHH-H---H
T ss_pred CCCCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCCCcc-H-------------------H-HHH-H---H
Confidence 4556899999999999999999999987653 55665553111000 0 0 011 2 4
Q ss_pred HHHhhhcCCceEEEEEEEeeCCCChhHHHHHHHhhc-----CccEEEecCCCccccCCccccCchhhHHHHHHhhccCCC
Q 043324 511 AVDIFSSETKIFVRQIKAVSSFPTMYEDVCSQAEDL-----RVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPC 585 (788)
Q Consensus 511 af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~-----~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apC 585 (788)
+++.|-+..+|. .+.++..-.+.++++-.+.+.. +.+.|+++|..+... ...++++.++..+ +--
T Consensus 70 ~l~~~l~~r~v~--a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~-------~~~y~~~i~~~~~-~~~ 139 (294)
T 3g40_A 70 SISEGFQEEGVF--SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDR-------DEEIREIIRKASM-YRM 139 (294)
T ss_dssp HHHHHHHHTTCE--EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGG-------HHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHhCCce--eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhh-------hHHHHHHHHHHHH-hCc
Confidence 444443333333 3334433346778888887765 679999999755321 2457777777544 355
Q ss_pred ceEEEecCCCcccccccCCCCccEEEEEccC--------C--ccHHHHHHHHHHHhhCCceEEEEEEcccCCCCCccccc
Q 043324 586 SVGILVDRGCLEFQRLLAPDSLQSVATLFFG--------G--PDDREAIACSKRLAMHHHLNLTVIRFLPSEFGEEDVNV 655 (788)
Q Consensus 586 sVgIlVdRg~~~~~~~~~~~~~~~i~v~f~G--------G--~DDreAL~~a~rma~~~~v~ltv~r~~~~~~~~~~~~~ 655 (788)
.|-||-+....++.+ .++|=+=.-| | ..-..++-+|-.+.+|.++++.+.++++++
T Consensus 140 nVlil~~~~~~~fg~------~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de-------- 205 (294)
T 3g40_A 140 GVLLFSKHPQAGLGR------QNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTA-------- 205 (294)
T ss_dssp EEEEEECCTTTTTTT------SCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSH--------
T ss_pred eEEEEecCCccCCCC------CceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCH--------
Confidence 555553322111111 2455553222 1 123558889999999999999999998721
Q ss_pred CCCCCCCCCCCCcchhhhhccCCCccccHHHHHHHHHHhccCCCceEEEEEecCChHHHHHHHHhhcCcccEEEEecCCC
Q 043324 656 SSSTASPHFNLGNEVFMSIARRNPENKRDDVYMDEFYKRYVSSGQIGYVEKNLRDGAETLQALRDIGDMYSLFIVGKGRR 735 (788)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~v~y~E~~v~~~~~~~~~i~~~~~~~dL~iVGr~~~ 735 (788)
.+++.-+++++++.+..--.... | .+.+ ...+.|++- ..-||+++|-...
T Consensus 206 -----------------------~a~~~a~~~l~~Lv~~~Ri~a~~-~--vv~~---~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 206 -----------------------IQAQAAENFLQSLAELARIPNVK-M--QVLR---ENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTCCSCE-E--EEES---SCTTTSSSC-CCCSEEEEECCSS
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCCceE-E--EecC---chHHHHhhC-cCCCEEEEcCCCC
Confidence 13344467777777654322222 2 2222 233445553 5689999998543
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=62.65 E-value=54 Score=34.38 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=47.2
Q ss_pred HHhHHHHHHHhhhccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH---hhHHHHHHHH
Q 043324 298 NFVLPSYFGFTGFQFNISSLSTI-DNVIVALVMVSLSIAGKILGTLLACYYLKIPLNIEAVILAFIL---NLKGHADLVV 373 (788)
Q Consensus 298 ~l~lplFFv~~G~~idl~~l~~~-~~~~~~~~i~~~~~~~K~~~~~l~~~~~~~~~~~~a~~lglll---~~kG~~~li~ 373 (788)
...+.+-+...|++++...+... ..+.......+.-++...+..+..++.++.+ .....|+++ .|-|..+.+.
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~---~~~~~Glil~~~~P~~~~s~v~ 122 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLP---AEIAVGVILVGCCPGGTASNVM 122 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHSCCCTHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHhcCCchhHHHHH
Confidence 35566777889999998887631 2355445555566677777788888887655 445555533 3445555544
Q ss_pred Hhh
Q 043324 374 VDA 376 (788)
Q Consensus 374 ~~~ 376 (788)
...
T Consensus 123 t~~ 125 (332)
T 3zux_A 123 TYL 125 (332)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 43
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=48.89 E-value=3.1 Score=28.07 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHhcCc
Q 043324 144 IAFAIVTIIIIANSASPVVIRLAADLKL 171 (788)
Q Consensus 144 ~~~~l~lg~~ls~Ts~~vv~~iL~el~l 171 (788)
+..++++|.++|.|++..+..++++++.
T Consensus 3 ~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 3 KKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 3446788999999999999999999885
No 44
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=40.69 E-value=33 Score=34.57 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=22.4
Q ss_pred CccHHHHHHHHHHHhhCCce--EEEEEEcc
Q 043324 617 GPDDREAIACSKRLAMHHHL--NLTVIRFL 644 (788)
Q Consensus 617 G~DDreAL~~a~rma~~~~v--~ltv~r~~ 644 (788)
.|.|.+|++.|.|+.+. +. ++|++-+=
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G 64 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIG 64 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence 58999999999999987 55 78877663
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=40.49 E-value=25 Score=36.90 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=29.2
Q ss_pred EEEEEccCCccHHHHHHHHHHHhhCCceEEEEEEcc
Q 043324 609 SVATLFFGGPDDREAIACSKRLAMHHHLNLTVIRFL 644 (788)
Q Consensus 609 ~i~v~f~GG~DDreAL~~a~rma~~~~v~ltv~r~~ 644 (788)
++++.|.||+|+--.|.++.+.....+..+.++++-
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vD 83 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVD 83 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEEC
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEE
Confidence 689999999999999999999876445556677773
No 46
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=39.64 E-value=33 Score=34.68 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.6
Q ss_pred CccHHHHHHHHHHHhhCCce--EEEEEEcc
Q 043324 617 GPDDREAIACSKRLAMHHHL--NLTVIRFL 644 (788)
Q Consensus 617 G~DDreAL~~a~rma~~~~v--~ltv~r~~ 644 (788)
.|.|.+|++.|.|+.+. +. ++|++.+=
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G 67 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCG 67 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence 58999999999999987 55 88877664
No 47
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=38.93 E-value=1.3e+02 Score=30.95 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.1
Q ss_pred cEEEEEccCCccHHHHHHHHHHHh
Q 043324 608 QSVATLFFGGPDDREAIACSKRLA 631 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma 631 (788)
.++++-|.||+|+--.|.++.+..
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l 77 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCL 77 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHH
Confidence 379999999999999999988863
No 48
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=37.28 E-value=87 Score=31.67 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=22.8
Q ss_pred CccHHHHHHHHHHHhhCCce--EEEEEEcc
Q 043324 617 GPDDREAIACSKRLAMHHHL--NLTVIRFL 644 (788)
Q Consensus 617 G~DDreAL~~a~rma~~~~v--~ltv~r~~ 644 (788)
.|.|.+||+.|.|+++..+. ++|++.+=
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G 65 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVG 65 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 58999999999999976554 78877663
No 49
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=35.56 E-value=91 Score=33.95 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.1
Q ss_pred cEEEEEccCCccHHHHHHHHHHHhhC-CceEEEEEEccc
Q 043324 608 QSVATLFFGGPDDREAIACSKRLAMH-HHLNLTVIRFLP 645 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rma~~-~~v~ltv~r~~~ 645 (788)
.+|+|.|.||+|.--+|.++.++.+. .+.++.++|+-.
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdh 52 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHH 52 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEEC
Confidence 58999999999999999999998877 889999999954
No 50
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=28.21 E-value=97 Score=26.19 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=39.4
Q ss_pred ChhHHHHHHHhhcCccEEEecCCCccccCCccccCchhhHHHHHHhhccCCCceEEEecCC
Q 043324 534 TMYEDVCSQAEDLRVSLIFLPFHKHQRIDGKMEKGKDEMRSTNQKIIRHAPCSVGILVDRG 594 (788)
Q Consensus 534 ~m~~dI~~~A~~~~~~liilp~h~~~~~dg~~~~~~~~~r~~n~~vl~~apCsVgIlVdRg 594 (788)
...+.|..++++.+++.+++|.-++ .||.........|++-+++-++ +..| .++|--
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~--mdGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLR--TDLKESAQAGKVLPLVEALRAR-GVEV-ELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCC--CCSSSCCCSSTTHHHHHHHHHT-TCEE-EEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccC--CCCCcCHHHHHHHHHHHHHhcC-CCCE-EEECCC
Confidence 4467899999999999999998554 3343322334567777777666 7777 556653
No 51
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=25.77 E-value=2.5e+02 Score=28.96 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.5
Q ss_pred cEEEEEccCCccHHHHHHHHHHH
Q 043324 608 QSVATLFFGGPDDREAIACSKRL 630 (788)
Q Consensus 608 ~~i~v~f~GG~DDreAL~~a~rm 630 (788)
.++++-|.||+|+--.|.++.+-
T Consensus 59 ~~ialSfSGGKDStVLLhL~~ka 81 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSC 81 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHH
Confidence 36899999999999999999874
No 52
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=21.38 E-value=1.3e+02 Score=27.78 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=32.4
Q ss_pred EEEEEeeCCCChhHHHHHHHhhcCccEEEecCCCcccc
Q 043324 524 RQIKAVSSFPTMYEDVCSQAEDLRVSLIFLPFHKHQRI 561 (788)
Q Consensus 524 ~~~~~vs~~~~m~~dI~~~A~~~~~~liilp~h~~~~~ 561 (788)
.-..++-|...|+..|.++|++-.+|+||-|+..+...
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~~ 128 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDIV 128 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcCC
Confidence 44457788899999999999999999999999876543
No 53
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=21.10 E-value=2.1 Score=28.84 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=22.6
Q ss_pred HHHHHHHHhChhhHHHHHHHHhhccC
Q 043324 255 SVSMIIESSGLYSTVHCFLVGMMFPR 280 (788)
Q Consensus 255 ~~~~~~e~~G~~~~lGaflaGL~l~~ 280 (788)
++++++|.+++|++++.+.+|+.+.+
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 35578899999999999999999875
Done!