BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043330
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal
           Bundle In The Limulus Sperm
 pdb|3B63|I Chain I, Actin Filament Model In The Extended Form Of Acromsomal
           Bundle In The Limulus Sperm
          Length = 365

 Score = 33.1 bits (74), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 108 RHKDWQTCFNTLGLPA-----KPVLDCYKSGNGTKLLLQHAYETSHLIP-------PHTI 155
           R K  Q  F T  +PA     + VL  Y SG  T ++L      +H++P       PH I
Sbjct: 111 REKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAI 170

Query: 156 L 156
           L
Sbjct: 171 L 171


>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1
           Complex
          Length = 375

 Score = 33.1 bits (74), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 108 RHKDWQTCFNTLGLPA-----KPVLDCYKSGNGTKLLLQHAYETSHLIP-------PHTI 155
           R K  Q  F T  +PA     + VL  Y SG  T ++L      +H++P       PH I
Sbjct: 116 REKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAI 175

Query: 156 L 156
           L
Sbjct: 176 L 176


>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal
           Bundle In The Limulus Sperm
 pdb|3B63|G Chain G, Actin Filament Model In The Extended Form Of Acromsomal
           Bundle In The Limulus Sperm
          Length = 365

 Score = 32.7 bits (73), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 108 RHKDWQTCFNTLGLPA-----KPVLDCYKSGNGTKLLLQHAYETSHLIP-------PHTI 155
           R K  Q  F T  +PA     + VL  Y SG  T ++L      +H++P       PH I
Sbjct: 111 REKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAI 170

Query: 156 L 156
           L
Sbjct: 171 L 171


>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human
           Gelsolin Segment 1
          Length = 375

 Score = 32.3 bits (72), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 108 RHKDWQTCFNTLGLPA-----KPVLDCYKSGNGTKLLLQHAYETSHLIP-------PHTI 155
           R K  Q  F T  +PA     + VL  Y SG  T ++L      +H++P       PH I
Sbjct: 116 REKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGNTHVVPIYAGFSLPHAI 175

Query: 156 L 156
           L
Sbjct: 176 L 176


>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
          Length = 133

 Score = 30.4 bits (67), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 4   ASLPAKPGNVN----LSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVP-----WG 54
           A L   PG +N    LS++ + LS T S   ++N  G+F+ D    +N+  +       G
Sbjct: 42  AMLKEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFGMFDEDATKKLNIEYIKDLLENMG 101

Query: 55  DANISKSNNACICKHGP 71
           D N +K       K  P
Sbjct: 102 D-NFNKDEMRMTFKEAP 117


>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
          Cyclosporin- Binding Domain
          Length = 160

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLI-SIINLRLVPWGD 55
          G++++S++Y+    T  NF V ++ G +NN +   +I   +V  GD
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGD 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,373,816
Number of Sequences: 62578
Number of extensions: 316566
Number of successful extensions: 520
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 7
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)