BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043330
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus
GN=IFI30 PE=2 SV=1
Length = 244
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 14/195 (7%)
Query: 7 PAKPGN--VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---NISKS 61
P KP VN+S+YYE L P C F+++ L + ++ I+N+ LVP+G+A N+S
Sbjct: 48 PQKPDVPLVNVSLYYEALCPGCREFLIRELFPTWLM-VLEILNVTLVPYGNAQERNVSGK 106
Query: 62 NNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLG- 120
C+HG ECLLN+VEAC ++ L+ + I C+E ++ ++ + C
Sbjct: 107 WEF-TCQHGERECLLNKVEACLLDQLEQKIAFLT-IVCLE--EMDDMEQNLKPCLQIYAP 162
Query: 121 -LPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCR 179
+ A +++C G +LL +A T L PPH +PWV+VN + ++ D E+ VCR
Sbjct: 163 KVSADSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DAEHLLHLVCR 221
Query: 180 AYKGNVVPNACKLPS 194
Y+G P+ C+L +
Sbjct: 222 LYQGQ-KPDVCQLTA 235
>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus
norvegicus GN=Ifi30 PE=2 SV=1
Length = 248
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---NISKSNNACICKH 69
VN+S+YYE+L C F+V+NL + ++ I+N+ LVP+G+A N+S + C+H
Sbjct: 59 VNVSLYYESLCGACRYFLVRNLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEF-TCQH 116
Query: 70 GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKP--VL 127
G EC LN+VEAC +L + K F+ + +E K C P ++
Sbjct: 117 GELECKLNKVEAC---LLDKLEKEAAFLTIVCMEEMEDMEKKLGPCLQLYVPEVSPESIM 173
Query: 128 DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVP 187
+C GT+L+ ++A T L PPH +PWVLVN + + D + VC Y+G P
Sbjct: 174 ECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPL-TDPSQLLSSVCELYQGTEKP 232
Query: 188 NAC 190
+ C
Sbjct: 233 DIC 235
>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus
musculus GN=Ifi30 PE=1 SV=3
Length = 248
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 14/196 (7%)
Query: 13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA---NISKSNNACICKH 69
V +S+YYE+L C F+V++L + ++ I+N+ LVP+G+A N+S + C+H
Sbjct: 59 VRVSLYYESLCGACRYFLVRDLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEF-TCQH 116
Query: 70 GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKP--VL 127
G EC LN VEAC +L + K F+ + ++ K C P ++
Sbjct: 117 GELECRLNMVEAC---LLDKLEKEAAFLTIVCMEEMDDMEKKLGPCLQVYAPEVSPESIM 173
Query: 128 DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVP 187
+C GT+L+ ++A T L PPH +PWVLVN + +++ E + VC+ Y+G P
Sbjct: 174 ECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLKDPSE-LLSIVCQLYQGTEKP 232
Query: 188 NACKLPSPGINSAKKV 203
+ C S +S +KV
Sbjct: 233 DIC---SSIADSPRKV 245
>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa
GN=IFI30 PE=2 SV=1
Length = 246
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 102/192 (53%), Gaps = 16/192 (8%)
Query: 8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPWGDA---NISKSN 62
+ P VN+++YYE+L C F+V+ L F L+ I+N+ LVP+G+A N+S
Sbjct: 53 SDPPPVNVNLYYESLCNGCRYFLVREL---FPTWLMVWEILNVTLVPYGNAQERNVSGRW 109
Query: 63 NACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLP 122
C+HG EC +N+VEAC ++ L+ N + I CIE L + K+ + C
Sbjct: 110 EF-TCQHGEQECKMNKVEACLLDKLEK-NMAFLTIVCIEEL--DDMEKNLEPCLQIYAPK 165
Query: 123 AKP--VLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRA 180
P +++C G +LL +A T L PPH +PWV+VN + + + + VC+
Sbjct: 166 VSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPM-TEKDQLLRLVCQL 224
Query: 181 YKGNVVPNACKL 192
Y+G P+ C++
Sbjct: 225 YEGE-KPDVCQI 235
>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo
sapiens GN=IFI30 PE=1 SV=3
Length = 250
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 10/192 (5%)
Query: 13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNN--ACICKHG 70
VN+++YYE L C F+++ L + ++ I+N+ LVP+G+A + C+HG
Sbjct: 62 VNVTLYYEALCGGCRAFLIRELFPTWLL-VMEILNVTLVPYGNAQEQNVSGRWEFKCQHG 120
Query: 71 PDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTL--GLPAKPVLD 128
+EC N+VEAC ++ L ++ + I C+E E + C GL +++
Sbjct: 121 EEECKFNKVEACVLDEL-DMELAFLTIVCME--EFEDMERSLPLCLQLYAPGLSPDTIME 177
Query: 129 CYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVVPN 188
C G +L+ +A T L PPH +PWV VN + + + + T VC+ Y+G P+
Sbjct: 178 CAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLT-LVCQLYQGK-KPD 235
Query: 189 ACKLPSPGINSA 200
C + + S
Sbjct: 236 VCPSSTSSLRSV 247
>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1
SV=1
Length = 277
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 11/181 (6%)
Query: 13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPD 72
+N++V E L P C NF+ K L + + + +N+ LVP+G+A + + + C+HG +
Sbjct: 76 INITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE-DGTIKCQHGEE 134
Query: 73 ECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDW-QTCFNTL---GLPAKPVLD 128
EC +N+ E C I+ +++ + E L + D Q CF L G +
Sbjct: 135 ECSINKFEGCFIDSMQDQSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRLTQS 194
Query: 129 CYKSGNGTKLLLQHAYETSHLIP-PHTILPWVLVNNQAIRNDYENFT----AYVCRAYKG 183
C S G L + A T+++ P H +PWV++N ++ ++ F +C Y G
Sbjct: 195 CLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSL-TSFQGFQNQLPTLLCEWYSG 253
Query: 184 N 184
+
Sbjct: 254 D 254
>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3
SV=1
Length = 323
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 13 VNLSVYYETLSPTCSNFIVKNLEGVFNN-DLISIINLRLVPWGDANISKSNN--ACICKH 69
V L VY E P S F + L+ ++ ++ I L ++P+G A ++ N C C+H
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQH 198
Query: 70 GPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHK-DWQTCFNTLGLPA--KPV 126
GP EC +N++ C I+ ++Y + C ++G++ D T P+ + +
Sbjct: 199 GPTECQINQLMNCVIDRFGFPHRYLPGVLC-----MQGKYSLDEAMKCVTENYPSEYERM 253
Query: 127 LDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYVCRAYKGNVV 186
+C G +LL +T+ L P +PW+++N + + T VC A + +
Sbjct: 254 RECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQP--M 311
Query: 187 PNACK 191
P+ACK
Sbjct: 312 PSACK 316
>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282
PE=3 SV=1
Length = 220
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Query: 46 INLRLVPWG------DANISKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYC 99
IN P+G D++ S + C C HG ECLLN+++AC I L N +Y + C
Sbjct: 67 INFEYHPYGIKTTCVDSD-SGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVTC 125
Query: 100 IEFLAIEGRHKDWQTCFNT-LGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPW 158
I+ + + CFN L ++ C S +G KL H + + P PW
Sbjct: 126 IQ--GKQNISMAAEACFNEPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWAPW 183
Query: 159 VLVNNQAIRNDYENFTAYVCRAY 181
+L+N + + E+ ++C +
Sbjct: 184 ILINGKRYKEAEEDLWQFLCDRF 206
>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1
SV=1
Length = 218
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 59 SKSNNACICKHGPDECLLNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNT 118
S + C C HG ECLLN+++AC I L N Y + CI+ + + CF
Sbjct: 83 SADDVVCDCHHGNRECLLNQLQACVIEALPNFEDYMEVVTCIQ--GKQNISMAAEVCFEG 140
Query: 119 -LGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTAYV 177
L +++C +S +G KL + + P PW+L+N + E+ ++
Sbjct: 141 PTKLDRTKMMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILINGTRYKEAEEDLWQFL 200
Query: 178 CRAY 181
C +
Sbjct: 201 CDRF 204
>sp|Q9JIK1|CDHR5_RAT Cadherin-related family member 5 OS=Rattus norvegicus GN=Cdhr5 PE=1
SV=1
Length = 862
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 117 NTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVN--NQAIRNDYE--- 171
N+ L LD YKS N T LL ++IP HT V++N +R +
Sbjct: 184 NSPALKLDQTLDYYKSPNMTFRLLARDTREENVIPSHTATATVVLNVLPADLRTPWFLPC 243
Query: 172 NFT-AYVC-RAYKGNVVPNACKLPSPGINS 199
+FT Y C +A V+P KLPSP I S
Sbjct: 244 SFTDDYFCIQAQYHTVIPTGHKLPSPLILS 273
>sp|Q9LXJ7|FBD11_ARATH FBD-associated F-box protein At3g52670 OS=Arabidopsis thaliana
GN=At3g52670 PE=1 SV=2
Length = 416
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 76 LNEVEACAINVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFN 117
L +E C + K +Y + C+++L IEG +KD++ C N
Sbjct: 205 LKRLEICDVLHKKEFRRYTINVPCLKYLRIEGLNKDFELCLN 246
>sp|Q8VHF2|CDHR5_MOUSE Cadherin-related family member 5 OS=Mus musculus GN=Cdhr5 PE=2 SV=1
Length = 831
Score = 30.4 bits (67), Expect = 9.5, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 101 EFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVL 160
+F ++EG N L LD +K+ N T +LL ++ P HT ++
Sbjct: 176 KFFSLEG--------VNYPALKLDQTLDYFKNQNMTFMLLARDTWEENVEPSHTATATLV 227
Query: 161 VNN--QAIRNDYE---NFT-AYVC-RAYKGNVVPNACKLPSPGINS 199
+N +R + +FT YVC A VVP KLPSP I S
Sbjct: 228 LNTLPADLRTPWFLPCSFTDGYVCIHAQYSAVVPTGHKLPSPLIMS 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,697,497
Number of Sequences: 539616
Number of extensions: 3866242
Number of successful extensions: 6805
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6774
Number of HSP's gapped (non-prelim): 13
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)