Query 043330
Match_columns 225
No_of_seqs 119 out of 395
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3160 Gamma-interferon induc 100.0 3.8E-53 8.2E-58 364.3 13.8 174 7-183 35-208 (220)
2 PF03227 GILT: Gamma interfero 100.0 1.9E-38 4.1E-43 246.0 8.6 106 13-121 1-107 (108)
3 cd03023 DsbA_Com1_like DsbA fa 98.5 1.4E-06 3.1E-11 68.6 10.9 148 9-176 3-152 (154)
4 cd03019 DsbA_DsbA DsbA family, 98.2 5.3E-06 1.1E-10 67.5 8.0 136 10-166 14-154 (178)
5 PF13462 Thioredoxin_4: Thiore 98.1 8.5E-06 1.8E-10 65.1 6.9 149 6-177 7-160 (162)
6 cd03024 DsbA_FrnE DsbA family, 97.6 0.0011 2.5E-08 55.0 11.0 158 15-176 1-199 (201)
7 PRK10954 periplasmic protein d 97.1 0.0025 5.3E-08 54.3 8.3 139 10-166 36-178 (207)
8 PF01323 DSBA: DSBA-like thior 96.7 0.0029 6.3E-08 51.9 5.4 145 14-164 1-176 (193)
9 cd03025 DsbA_FrnE_like DsbA fa 96.7 0.0077 1.7E-07 49.6 8.0 148 13-164 1-178 (193)
10 PF13743 Thioredoxin_5: Thiore 96.6 0.0075 1.6E-07 50.3 7.2 143 17-163 2-155 (176)
11 cd03022 DsbA_HCCA_Iso DsbA fam 94.7 0.057 1.2E-06 44.2 4.9 55 110-166 124-178 (192)
12 COG1651 DsbG Protein-disulfide 94.1 0.53 1.2E-05 40.4 9.9 153 6-177 79-239 (244)
13 COG2761 FrnE Predicted dithiol 94.1 0.21 4.6E-06 43.7 7.3 169 9-182 2-214 (225)
14 PRK11657 dsbG disulfide isomer 88.8 0.97 2.1E-05 39.8 5.6 44 8-55 114-157 (251)
15 cd02972 DsbA_family DsbA famil 86.4 1 2.3E-05 31.6 3.7 42 15-58 1-42 (98)
16 PF14595 Thioredoxin_9: Thiore 82.9 1.7 3.7E-05 34.5 3.7 46 6-54 36-81 (129)
17 cd03020 DsbA_DsbC_DsbG DsbA fa 80.1 3.4 7.3E-05 34.5 4.8 44 7-56 73-116 (197)
18 cd02973 TRX_GRX_like Thioredox 79.9 3.7 8E-05 27.7 4.1 17 13-29 1-17 (67)
19 TIGR02189 GlrX-like_plant Glut 79.1 7.6 0.00017 29.1 6.0 49 113-167 25-73 (99)
20 TIGR00411 redox_disulf_1 small 79.0 4.1 8.9E-05 28.3 4.3 26 13-39 1-26 (82)
21 KOG2501 Thioredoxin, nucleored 73.1 1.5 3.2E-05 36.4 0.7 61 10-72 32-94 (157)
22 cd03027 GRX_DEP Glutaredoxin ( 70.9 14 0.00031 25.4 5.3 54 112-175 17-70 (73)
23 KOG1752 Glutaredoxin and relat 70.5 8.2 0.00018 29.7 4.3 32 131-167 48-79 (104)
24 PF13728 TraF: F plasmid trans 68.9 1.7 3.7E-05 37.5 0.2 42 7-54 116-157 (215)
25 cd03021 DsbA_GSTK DsbA family, 68.3 5.9 0.00013 33.4 3.4 49 113-163 136-187 (209)
26 PHA03050 glutaredoxin; Provisi 67.3 20 0.00043 27.5 5.9 50 112-167 29-81 (108)
27 PF13905 Thioredoxin_8: Thiore 65.7 20 0.00043 25.5 5.4 41 11-53 1-43 (95)
28 TIGR02190 GlrX-dom Glutaredoxi 64.2 5.9 0.00013 28.1 2.3 22 8-29 3-24 (79)
29 cd03026 AhpF_NTD_C TRX-GRX-lik 62.9 16 0.00034 26.8 4.4 42 8-52 9-50 (89)
30 PRK11200 grxA glutaredoxin 1; 62.6 8.5 0.00018 27.5 2.9 23 153-176 56-78 (85)
31 cd02066 GRX_family Glutaredoxi 60.0 7.6 0.00016 25.6 2.1 16 14-29 1-16 (72)
32 PRK10877 protein disulfide iso 59.9 23 0.0005 30.7 5.6 44 7-55 103-146 (232)
33 TIGR02200 GlrX_actino Glutared 58.7 6.9 0.00015 26.6 1.7 16 14-29 1-16 (77)
34 PRK13703 conjugal pilus assemb 58.3 7.9 0.00017 34.4 2.4 38 11-54 143-180 (248)
35 cd03012 TlpA_like_DipZ_like Tl 55.9 19 0.0004 27.5 3.9 44 5-51 17-60 (126)
36 cd03022 DsbA_HCCA_Iso DsbA fam 55.8 17 0.00036 29.4 3.9 35 15-53 1-35 (192)
37 cd03419 GRX_GRXh_1_2_like Glut 55.6 10 0.00022 26.3 2.2 16 14-29 1-16 (82)
38 cd03009 TryX_like_TryX_NRX Try 55.3 20 0.00044 27.3 4.1 36 3-39 10-45 (131)
39 cd03028 GRX_PICOT_like Glutare 53.6 52 0.0011 23.9 5.8 48 112-168 29-76 (90)
40 PF13098 Thioredoxin_2: Thiore 53.3 31 0.00067 25.3 4.7 27 9-36 3-29 (112)
41 PF00462 Glutaredoxin: Glutare 51.7 13 0.00027 24.7 2.1 15 15-29 1-15 (60)
42 TIGR02180 GRX_euk Glutaredoxin 51.6 10 0.00023 26.3 1.7 15 15-29 1-15 (84)
43 TIGR02739 TraF type-F conjugat 51.5 12 0.00026 33.4 2.4 39 10-54 149-187 (256)
44 PRK13728 conjugal transfer pro 49.4 16 0.00034 30.9 2.7 34 15-54 73-106 (181)
45 TIGR00365 monothiol glutaredox 49.3 54 0.0012 24.3 5.4 47 112-167 33-79 (97)
46 cd03418 GRX_GRXb_1_3_like Glut 49.0 14 0.00031 25.2 2.1 13 155-167 51-63 (75)
47 cd02949 TRX_NTR TRX domain, no 48.2 51 0.0011 23.8 5.1 34 9-44 11-44 (97)
48 cd03027 GRX_DEP Glutaredoxin ( 47.9 18 0.0004 24.9 2.5 16 14-29 2-17 (73)
49 TIGR02189 GlrX-like_plant Glut 45.9 13 0.00028 27.8 1.6 17 14-30 9-25 (99)
50 PHA03050 glutaredoxin; Provisi 45.7 13 0.00029 28.4 1.6 16 14-29 14-29 (108)
51 cd03021 DsbA_GSTK DsbA family, 45.3 38 0.00083 28.4 4.5 35 14-53 2-37 (209)
52 cd02995 PDI_a_PDI_a'_C PDIa fa 43.8 48 0.001 23.6 4.3 38 11-50 18-55 (104)
53 PRK11200 grxA glutaredoxin 1; 43.5 22 0.00047 25.3 2.4 16 14-29 2-17 (85)
54 cd02976 NrdH NrdH-redoxin (Nrd 43.5 18 0.00039 23.8 1.9 16 14-29 1-16 (73)
55 COG0695 GrxC Glutaredoxin and 43.2 16 0.00034 26.4 1.6 16 152-167 50-65 (80)
56 TIGR02196 GlrX_YruB Glutaredox 42.7 15 0.00032 24.3 1.3 15 15-29 2-16 (74)
57 TIGR02181 GRX_bact Glutaredoxi 41.7 15 0.00033 25.5 1.3 15 153-167 47-61 (79)
58 cd02966 TlpA_like_family TlpA- 40.3 65 0.0014 22.5 4.6 31 8-39 16-46 (116)
59 PF11287 DUF3088: Protein of u 39.9 13 0.00029 29.1 0.8 36 21-59 22-57 (112)
60 cd03029 GRX_hybridPRX5 Glutare 39.5 23 0.0005 24.2 1.9 16 153-168 48-63 (72)
61 TIGR01295 PedC_BrcD bacterioci 39.2 26 0.00057 27.2 2.4 19 11-29 23-41 (122)
62 PRK10824 glutaredoxin-4; Provi 38.7 1.4E+02 0.0031 23.2 6.4 46 113-167 37-82 (115)
63 cd02964 TryX_like_family Trypa 38.0 47 0.001 25.5 3.7 44 6-51 12-56 (132)
64 cd02967 mauD Methylamine utili 38.0 70 0.0015 23.3 4.5 26 5-30 14-40 (114)
65 PRK10638 glutaredoxin 3; Provi 37.9 29 0.00062 24.6 2.3 16 14-29 3-18 (83)
66 PRK03147 thiol-disulfide oxido 37.6 48 0.001 26.2 3.8 35 8-44 58-92 (173)
67 TIGR02183 GRXA Glutaredoxin, G 37.0 22 0.00049 25.6 1.6 22 154-176 56-77 (86)
68 cd03008 TryX_like_RdCVF Trypar 36.6 58 0.0012 26.4 4.1 33 6-39 20-52 (146)
69 PF13192 Thioredoxin_3: Thiore 35.2 1.1E+02 0.0023 21.3 4.9 35 13-52 1-35 (76)
70 cd02965 HyaE HyaE family; HyaE 34.8 75 0.0016 24.7 4.3 20 10-29 26-47 (111)
71 cd02969 PRX_like1 Peroxiredoxi 34.3 44 0.00096 26.8 3.1 41 10-53 24-64 (171)
72 cd01659 TRX_superfamily Thiore 34.2 75 0.0016 18.9 3.6 16 15-30 1-16 (69)
73 TIGR01126 pdi_dom protein disu 34.0 76 0.0016 22.3 4.1 21 10-30 12-32 (102)
74 cd02953 DsbDgamma DsbD gamma f 33.3 64 0.0014 23.4 3.6 23 10-32 10-32 (104)
75 cd02961 PDI_a_family Protein D 32.2 1.2E+02 0.0026 20.8 4.8 26 13-39 17-42 (101)
76 cd03010 TlpA_like_DsbE TlpA-li 32.0 45 0.00098 25.1 2.7 23 8-30 22-44 (127)
77 PRK12759 bifunctional gluaredo 31.6 97 0.0021 29.2 5.3 55 112-167 18-72 (410)
78 cd02950 TxlA TRX-like protein 31.6 1E+02 0.0023 24.3 4.8 22 9-30 18-39 (142)
79 PRK09381 trxA thioredoxin; Pro 31.0 1.3E+02 0.0027 21.9 4.9 21 10-30 20-40 (109)
80 PRK10329 glutaredoxin-like pro 30.5 39 0.00084 24.3 1.9 16 14-29 2-17 (81)
81 TIGR02540 gpx7 putative glutat 30.0 60 0.0013 25.6 3.1 46 5-53 16-61 (153)
82 cd02968 SCO SCO (an acronym fo 29.7 71 0.0015 24.3 3.5 41 9-51 20-63 (142)
83 PTZ00051 thioredoxin; Provisio 29.6 1.4E+02 0.003 21.1 4.8 28 10-38 17-44 (98)
84 KOG3425 Uncharacterized conser 28.8 75 0.0016 25.5 3.4 35 20-56 42-76 (128)
85 PF08534 Redoxin: Redoxin; In 28.3 48 0.001 25.6 2.3 33 6-39 23-56 (146)
86 cd03001 PDI_a_P5 PDIa family, 27.8 1.5E+02 0.0032 21.0 4.7 21 10-30 17-37 (103)
87 TIGR01068 thioredoxin thioredo 27.5 1.3E+02 0.0028 20.9 4.3 21 10-30 13-33 (101)
88 KOG1752 Glutaredoxin and relat 27.3 43 0.00092 25.8 1.8 39 14-55 15-53 (104)
89 cd02996 PDI_a_ERp44 PDIa famil 27.3 1.9E+02 0.0041 21.0 5.4 20 11-30 18-37 (108)
90 PF00085 Thioredoxin: Thioredo 27.3 1.7E+02 0.0036 20.4 4.9 33 10-44 16-48 (103)
91 cd03002 PDI_a_MPD1_like PDI fa 26.7 1.3E+02 0.0028 21.7 4.3 22 9-30 16-37 (109)
92 TIGR02194 GlrX_NrdH Glutaredox 26.7 37 0.0008 23.3 1.2 11 154-164 47-57 (72)
93 cd03040 GST_N_mPGES2 GST_N fam 26.7 45 0.00098 22.8 1.7 15 15-29 2-16 (77)
94 TIGR02740 TraF-like TraF-like 25.8 72 0.0016 28.4 3.2 40 8-53 163-202 (271)
95 COG4545 Glutaredoxin-related p 24.7 46 0.00099 24.6 1.4 16 16-31 5-20 (85)
96 cd03004 PDI_a_ERdj5_C PDIa fam 23.5 2.2E+02 0.0048 20.3 5.0 20 10-29 18-37 (104)
97 cd03031 GRX_GRX_like Glutaredo 23.1 1.2E+02 0.0027 24.6 3.8 14 154-167 59-72 (147)
98 cd03003 PDI_a_ERdj5_N PDIa fam 23.0 2.4E+02 0.0052 20.1 5.1 20 10-29 17-36 (101)
99 PRK10996 thioredoxin 2; Provis 22.7 1.6E+02 0.0036 23.0 4.4 29 10-39 51-79 (139)
100 cd02993 PDI_a_APS_reductase PD 22.3 2E+02 0.0043 21.1 4.7 22 9-30 19-40 (109)
101 TIGR02187 GlrX_arch Glutaredox 21.9 1.6E+02 0.0034 24.8 4.4 21 9-29 131-151 (215)
102 cd03014 PRX_Atyp2cys Peroxired 21.8 1.1E+02 0.0023 23.5 3.1 43 6-53 21-64 (143)
103 cd02997 PDI_a_PDIR PDIa family 21.8 1.3E+02 0.0029 21.2 3.5 20 11-30 17-36 (104)
104 cd02998 PDI_a_ERp38 PDIa famil 21.3 88 0.0019 22.1 2.4 20 10-29 17-36 (105)
105 PRK13675 GTP cyclohydrolase; P 21.2 1.3E+02 0.0028 27.5 4.0 29 10-38 144-172 (308)
106 cd02999 PDI_a_ERp44_like PDIa 21.2 2E+02 0.0044 21.0 4.4 23 8-30 15-37 (100)
107 cd02956 ybbN ybbN protein fami 21.0 2.1E+02 0.0046 20.1 4.4 22 9-30 10-31 (96)
108 cd02992 PDI_a_QSOX PDIa family 20.7 3E+02 0.0066 20.6 5.4 21 10-30 18-38 (114)
No 1
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-53 Score=364.31 Aligned_cols=174 Identities=39% Similarity=0.760 Sum_probs=162.7
Q ss_pred CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhh
Q 043330 7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINV 86 (225)
Q Consensus 7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~ 86 (225)
+++.++|+|+||||||||||++||++||.|+|.+.+.+++||+|||||||+..+++++|+||||+.||.+|++|||+|++
T Consensus 35 ~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~ 114 (220)
T KOG3160|consen 35 GSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDT 114 (220)
T ss_pred cccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHh
Confidence 45667999999999999999999999999999955789999999999999998544899999999999999999999999
Q ss_pred ccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330 87 LKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI 166 (225)
Q Consensus 87 ~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 166 (225)
+++...+++||.||++. ...+.+.+|+++.++++..|.+|++|++|.+|+.++|.+|..+.|+|.|||||+|||++.
T Consensus 115 l~~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~~ 191 (220)
T KOG3160|consen 115 LPDQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQPL 191 (220)
T ss_pred hhchHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcch
Confidence 99999999999999983 345567789999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHhhcC
Q 043330 167 RNDYENFTAYVCRAYKG 183 (225)
Q Consensus 167 ~~~~~nl~~~IC~~y~g 183 (225)
++++.||..++|..|++
T Consensus 192 ~~~~~~l~~~~C~~~~~ 208 (220)
T KOG3160|consen 192 QDAEQDLVTLLCEAYKG 208 (220)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999998
No 2
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=1.9e-38 Score=246.04 Aligned_cols=106 Identities=42% Similarity=0.790 Sum_probs=92.8
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHhh-ccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhccCcc
Q 043330 13 VNLSVYYETLSPTCSNFIVKNLEGVFNN-DLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKNVN 91 (225)
Q Consensus 13 V~V~vyyESlCPds~~Fi~~qL~p~~~~-~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~~~~ 91 (225)
|+|+||||||||||++||++||.|+|.. ++.++|||+|||||||+....+++|+|||||.||+||++|+|+++++++..
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~ 80 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN 80 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence 7999999999999999999999997732 799999999999999999854446999999999999999999999999888
Q ss_pred chhhhhhhhcchhccCchhhHHHHHhhcCC
Q 043330 92 KYYGFIYCIEFLAIEGRHKDWQTCFNTLGL 121 (225)
Q Consensus 92 ~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gl 121 (225)
.+|+||+||+++. .....+. |+++++.
T Consensus 81 ~~~~~i~Cm~~~~--~~~~~~~-Ca~~~~~ 107 (108)
T PF03227_consen 81 AALPFIACMESSQ--DFPKAIK-CAKKYGI 107 (108)
T ss_pred hhcCEEEEEcCCC--CCchhhh-hHHhcCC
Confidence 8899999999874 2333343 9999875
No 3
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.51 E-value=1.4e-06 Score=68.58 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=91.8
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhcc
Q 043330 9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLK 88 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~ 88 (225)
...+++|.+|+.-.||.|++|. ..|...+. ...+ +.+.++||--... ... ..-..-.|+...
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~-~~~~-~~~~~~~~p~~~~---~~~----------~~~~~~~~~~~~-- 64 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLK-EDPD-VRVVFKEFPILGE---SSV----------LAARVALAVWKN-- 64 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhh-HHHHHHHH-HCCC-ceEEEEeCCccCc---chH----------HHHHHHHHHHHh--
Confidence 4578999999999999999995 45666554 3444 6677766631110 000 000111122221
Q ss_pred CccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeechh
Q 043330 89 NVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRN 168 (225)
Q Consensus 89 ~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~ 168 (225)
+....+.|..=+...............+...|++.+.+.+|.++......+.+..+....+ ++..+||++|||+....
T Consensus 65 ~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~~~G 142 (154)
T cd03023 65 GPGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTVIPG 142 (154)
T ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEEecC
Confidence 2234555543332221111223456778999999999999999988888888887777766 58999999999986542
Q ss_pred --hHhhHHHH
Q 043330 169 --DYENFTAY 176 (225)
Q Consensus 169 --~~~nl~~~ 176 (225)
..+.|...
T Consensus 143 ~~~~~~l~~~ 152 (154)
T cd03023 143 AVPADTLKEA 152 (154)
T ss_pred CCCHHHHHHH
Confidence 34445443
No 4
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.23 E-value=5.3e-06 Score=67.49 Aligned_cols=136 Identities=18% Similarity=0.110 Sum_probs=89.3
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhhhhhccC
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACAINVLKN 89 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~i~~~~~ 89 (225)
..+|+|..|+.-.||.|.+|- ..+.+++. +..+.+.|+++|+...... +. ...+..+.+.. .
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~---~~----------~aa~a~~aa~~-~-- 75 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVK-KLPKDVKFEKVPVVFGGGE---GE----------PLARAFYAAEA-L-- 75 (178)
T ss_pred CCCcEEEEEECCCCcchhhhh-HHHHHHHH-hCCCCceEEEcCCcccccc---ch----------HHHHHHHHHHH-c--
Confidence 679999999999999999995 44777777 4677889999987643211 00 00111111111 1
Q ss_pred ccchhhhhhhhcch----hcc-CchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCe
Q 043330 90 VNKYYGFIYCIEFL----AIE-GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQ 164 (225)
Q Consensus 90 ~~~~~~fI~C~~~~----~~~-~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~ 164 (225)
...+.|..=+... ... .....+...+.+.|++.+.+.+|.++.+-...+.+..+....+ ++..+||++|||+
T Consensus 76 -~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iInG~ 152 (178)
T cd03019 76 -GLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVNGK 152 (178)
T ss_pred -CcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEECCE
Confidence 1122222211111 001 1234578899999999999999999887777777777766665 5799999999998
Q ss_pred ec
Q 043330 165 AI 166 (225)
Q Consensus 165 ~~ 166 (225)
..
T Consensus 153 ~~ 154 (178)
T cd03019 153 YV 154 (178)
T ss_pred EE
Confidence 64
No 5
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.11 E-value=8.5e-06 Score=65.14 Aligned_cols=149 Identities=13% Similarity=0.182 Sum_probs=92.1
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcc--ccceEEEEEEEeeeeeecCCCCeeecCChhhhccChhhhhh
Q 043330 6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDL--ISIINLRLVPWGDANISKSNNACICKHGPDECLLNEVEACA 83 (225)
Q Consensus 6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l--~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~iqaC~ 83 (225)
+.....++.|++|..-.||.|.+|... |.+++. .+ .+.+.|.++|+-... .....+-.+..|+
T Consensus 7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~-~~~~~~-~~i~~~~v~~~~~~~~~~~-------------~~~~~a~~~~~~~ 71 (162)
T PF13462_consen 7 IGNPDAPITVTEFFDFQCPHCAKFHEE-LEKLLK-KYIDPGKVKFVFRPVPLDK-------------HSSLRAAMAAECV 71 (162)
T ss_dssp ES-TTTSEEEEEEE-TTSHHHHHHHHH-HHHHHH-HHTTTTTEEEEEEESSSSH-------------HHHHHHHHHHHHH
T ss_pred ecCCCCCeEEEEEECCCCHhHHHHHHH-Hhhhhh-hccCCCceEEEEEEccccc-------------hhHHHHHHHHHHH
Confidence 456778999999999999999999655 457777 45 568899998872111 1144555566666
Q ss_pred hhhccCccchhhhhhhhcchhccCch-hhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEEC
Q 043330 84 INVLKNVNKYYGFIYCIEFLAIEGRH-KDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVN 162 (225)
Q Consensus 84 i~~~~~~~~~~~fI~C~~~~~~~~~~-~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN 162 (225)
... + +.++.+..-+......... ..+. ...+.+.+.+.+|+.+..-...+....+.+... ++..+|+|+||
T Consensus 72 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~~in 143 (162)
T PF13462_consen 72 ADQ--G-KYFWFFHELLFSQQENFENKKDIA---ANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTFFIN 143 (162)
T ss_dssp HHH--T-HHHHHHHHHHHHHCHSTSSHHHHH---HHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEEEET
T ss_pred HHH--h-HHHHHHHHHHHHhhhccchhHHHH---HHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEEEEC
Confidence 554 2 3444455445433211111 1111 233444667889988776666666655555554 58999999999
Q ss_pred Ceechh--hHhhHHHHH
Q 043330 163 NQAIRN--DYENFTAYV 177 (225)
Q Consensus 163 G~~~~~--~~~nl~~~I 177 (225)
|+.+.. ..++|..+|
T Consensus 144 G~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 144 GKYVVGPYTIEELKELI 160 (162)
T ss_dssp TCEEETTTSHHHHHHHH
T ss_pred CEEeCCCCCHHHHHHHH
Confidence 998643 355665554
No 6
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.55 E-value=0.0011 Score=54.99 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=96.8
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHhhccc--cceEEEEEEEeeeeeecCCCC----eee-cCCh----------------
Q 043330 15 LSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPWGDANISKSNNA----CIC-KHGP---------------- 71 (225)
Q Consensus 15 V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~G~a~~~~~~~~----~~C-qHG~---------------- 71 (225)
|++|+.-.||+|--. ..+|..+.. .+. +-++|++.||+-.......+. ... +||.
T Consensus 1 I~~~~D~~cP~cyl~-~~~l~~~~~-~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~ 78 (201)
T cd03024 1 IDIWSDVVCPWCYIG-KRRLEKALA-ELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA 78 (201)
T ss_pred CeEEecCcCccHHHH-HHHHHHHHH-hCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 579999999999666 355666665 343 259999999974432211110 000 1111
Q ss_pred ---------hhhccChhhhhhhhhc-cCccchhhhhhhhcchhc-c----CchhhHHHHHhhcCCCcccccccccCCchh
Q 043330 72 ---------DECLLNEVEACAINVL-KNVNKYYGFIYCIEFLAI-E----GRHKDWQTCFNTLGLPAKPVLDCYKSGNGT 136 (225)
Q Consensus 72 ---------~EC~gN~iqaC~i~~~-~~~~~~~~fI~C~~~~~~-~----~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~ 136 (225)
..-..|...+|.+-.. .......+|..=+..... . .........+...|+|.+.+.++.++.+..
T Consensus 79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~ 158 (201)
T cd03024 79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA 158 (201)
T ss_pred HcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence 0011355555543322 122345666665554321 1 123356788999999999999999998888
Q ss_pred HHHHHHHHhhccCCCCCceeeEEEECCeec-h--hhHhhHHHH
Q 043330 137 KLLLQHAYETSHLIPPHTILPWVLVNNQAI-R--NDYENFTAY 176 (225)
Q Consensus 137 ~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~--~~~~nl~~~ 176 (225)
+.+.+..+.+..+ ++..+||++|||++. . ...+.|.+.
T Consensus 159 ~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~~~G~~~~~~~~~~ 199 (201)
T cd03024 159 DEVRADEARARQL--GISGVPFFVFNGKYAVSGAQPPEVFLQA 199 (201)
T ss_pred hHHHHHHHHHHHC--CCCcCCEEEECCeEeecCCCCHHHHHHH
Confidence 8888887777665 689999999999753 2 124455544
No 7
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.12 E-value=0.0025 Score=54.25 Aligned_cols=139 Identities=13% Similarity=0.097 Sum_probs=80.7
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhh--HHHHhhccccceEEEEEEEeeeeeecCC--CCeeecCChhhhccChhhhhhhh
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNL--EGVFNNDLISIINLRLVPWGDANISKSN--NACICKHGPDECLLNEVEACAIN 85 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL--~p~~~~~l~~~vdl~lvP~G~a~~~~~~--~~~~CqHG~~EC~gN~iqaC~i~ 85 (225)
..++.|.-|+-=.||.|.+|-. .| .+.|.+.+.+-+.+..+|+--....... .-+ --.+|.+.. +
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~----~~a~~~~~~------~ 104 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAW----AVAMALGVE------D 104 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchhhHHHHHHH----HHHHHhCcH------H
Confidence 3567899999999999999954 22 3555545565556666554211100000 000 001122110 0
Q ss_pred hccCccchhhhhhhhcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCee
Q 043330 86 VLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQA 165 (225)
Q Consensus 86 ~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~ 165 (225)
.+ ....+..+ +.... .........-+...|+|.+.+.+|.++..-...+.+..+.+..+ +++-+|+++|||++
T Consensus 105 k~--~~~lf~~i--~~~~~-~~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInGky 177 (207)
T PRK10954 105 KV--TPPLFEGV--QKTQT-IQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNGKY 177 (207)
T ss_pred HH--HHHHHHHH--HccCC-CCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECCEE
Confidence 00 00112222 11111 12234466778889999999999999887777777776666665 58999999999997
Q ss_pred c
Q 043330 166 I 166 (225)
Q Consensus 166 ~ 166 (225)
.
T Consensus 178 ~ 178 (207)
T PRK10954 178 M 178 (207)
T ss_pred E
Confidence 4
No 8
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.74 E-value=0.0029 Score=51.91 Aligned_cols=145 Identities=13% Similarity=0.057 Sum_probs=82.2
Q ss_pred EEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeec-CCC----C--------------------eeec
Q 043330 14 NLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISK-SNN----A--------------------CICK 68 (225)
Q Consensus 14 ~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~-~~~----~--------------------~~Cq 68 (225)
+|++|+.-.||+|-.+.. .|..+.. ...+ ++|++.||.-..... .++ . +.-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~-~~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~ 77 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASP-RLRKLRA-EYPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN 77 (193)
T ss_dssp EEEEEEBTTBHHHHHHHH-HHHHHHH-HHTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred CEEEEEeCCCHHHHHHHH-HHHHHHH-HhcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence 589999999999987753 3555555 3334 999999997432210 011 0 0000
Q ss_pred CChhhhccChhhhhhhhh-ccCccchhhhhhh-----hcchhccCchhhHHHHHhhcCCCcccccccccCCchhHHHHHH
Q 043330 69 HGPDECLLNEVEACAINV-LKNVNKYYGFIYC-----IEFLAIEGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQH 142 (225)
Q Consensus 69 HG~~EC~gN~iqaC~i~~-~~~~~~~~~fI~C-----~~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~ 142 (225)
..+.. .+|...+..+-. .........+..= ......-+..+.....+.+.|+|.+.+.+-.++..++..+.+.
T Consensus 78 ~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~ 156 (193)
T PF01323_consen 78 FPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEED 156 (193)
T ss_dssp TSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHH
T ss_pred CCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHH
Confidence 00000 012222222211 1111111122111 1111111223446788999999999999998888888888888
Q ss_pred HHhhccCCCCCceeeEEEECCe
Q 043330 143 AYETSHLIPPHTILPWVLVNNQ 164 (225)
Q Consensus 143 ~~~T~~l~P~~~~VPwI~iNG~ 164 (225)
.++...+ ++.-|||++|||+
T Consensus 157 ~~~a~~~--gv~GvP~~vv~g~ 176 (193)
T PF01323_consen 157 TAEARQL--GVFGVPTFVVNGK 176 (193)
T ss_dssp HHHHHHT--TCSSSSEEEETTT
T ss_pred HHHHHHc--CCcccCEEEECCE
Confidence 8777766 5899999999998
No 9
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=96.74 E-value=0.0077 Score=49.57 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=90.2
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCC-------------------CCeeecCChhh
Q 043330 13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSN-------------------NACICKHGPDE 73 (225)
Q Consensus 13 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~-------------------~~~~CqHG~~E 73 (225)
++|.+|+.-+||+|-... .+|..+.. .+...++|++.+++-....... .+..-..++.+
T Consensus 1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~-~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (193)
T cd03025 1 LELYYFIDPLCGWCYGFE-PLLEKLKE-EYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE 78 (193)
T ss_pred CeEEEEECCCCchhhCch-HHHHHHHH-HhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence 478999999999996553 34555554 4544588888877643322100 00111111110
Q ss_pred ---hccChhhhhhhhhc-c--Cccchhhhhhhhcchhc-----cCchhhHHHHHhhcCCCcccccccccCCchhHHHHHH
Q 043330 74 ---CLLNEVEACAINVL-K--NVNKYYGFIYCIEFLAI-----EGRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQH 142 (225)
Q Consensus 74 ---C~gN~iqaC~i~~~-~--~~~~~~~fI~C~~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~ 142 (225)
--.|...++..-.. . .......|+.-++.... -+........+.+.|+|.+.+.++.++...+..+.+.
T Consensus 79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~~ 158 (193)
T cd03025 79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQED 158 (193)
T ss_pred cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHH
Confidence 00123333332211 1 12355677766654321 1223356788999999999999999999999999888
Q ss_pred HHhhccCCCCCceeeEEEECCe
Q 043330 143 AYETSHLIPPHTILPWVLVNNQ 164 (225)
Q Consensus 143 ~~~T~~l~P~~~~VPwI~iNG~ 164 (225)
-+....+ ++.-+||++|++.
T Consensus 159 ~~~a~~~--gv~g~Ptfvv~~~ 178 (193)
T cd03025 159 QKLAREL--GINGFPTLVLEDD 178 (193)
T ss_pred HHHHHHc--CCCccCEEEEEeC
Confidence 8877776 5799999999765
No 10
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.63 E-value=0.0075 Score=50.32 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=83.5
Q ss_pred EEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCC-CeeecCChh--hhccChhhhhhhhh---ccCc
Q 043330 17 VYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNN-ACICKHGPD--ECLLNEVEACAINV---LKNV 90 (225)
Q Consensus 17 vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~-~~~CqHG~~--EC~gN~iqaC~i~~---~~~~ 90 (225)
+|+--+|+.|-.+ ...|..+.. .+...+++++||.|++......- ...+.+... +=......+|.--+ +...
T Consensus 2 ~F~dPlc~~C~~~-E~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~ 79 (176)
T PF13743_consen 2 LFVDPLCSWCWGF-EPELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK 79 (176)
T ss_dssp EEE-TT-HHHHHH-HHHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred eeeCCCChHHHHh-HHHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence 5777899999777 333455555 68889999999999986642110 111222221 12244556662111 2245
Q ss_pred cchhhhhhhhcchhcc-----CchhhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECC
Q 043330 91 NKYYGFIYCIEFLAIE-----GRHKDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNN 163 (225)
Q Consensus 91 ~~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 163 (225)
+++..|+.-|+..... +..+....||+++|+|.+...+=.+|...++.+.+--+.+..+. ++-.|+++|-+
T Consensus 80 k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m~--I~~~Ptlvi~~ 155 (176)
T PF13743_consen 80 KKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREMG--ITGFPTLVIFN 155 (176)
T ss_dssp H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTT---SSSSEEEEE-
T ss_pred hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC--CCCCCEEEEEe
Confidence 6778898888765421 22356789999999999887777788888888888888888884 79999999865
No 11
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=94.71 E-value=0.057 Score=44.22 Aligned_cols=55 Identities=15% Similarity=0.058 Sum_probs=46.8
Q ss_pred hhHHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec
Q 043330 110 KDWQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI 166 (225)
Q Consensus 110 ~~~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 166 (225)
.....++.+.|+|.+.+.++.++.+..+.+.+..+....+ ++.-|||++|||+..
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~ 178 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF 178 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence 3467899999999999999999988888888887777665 689999999999864
No 12
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.53 Score=40.39 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=83.1
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeeecCCCCeeecCChhhh-ccChhhhhhh
Q 043330 6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANISKSNNACICKHGPDEC-LLNEVEACAI 84 (225)
Q Consensus 6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~~~~~~~~CqHG~~EC-~gN~iqaC~i 84 (225)
+.....+|.|.+|++-.||+|.+.+-. |...+.. ..+ +++.+++|--.... |.| | .+-..-.|+.
T Consensus 79 ~G~~~~~v~v~~f~d~~Cp~C~~~~~~-l~~~~i~-~~~-~~~~~~~~~f~~~~-------~~~----~~~a~~~~~~~~ 144 (244)
T COG1651 79 LGNPYAPVTVVEFFDYTCPYCKEAFPE-LKKKYID-DGK-VRLVLREFPFLDPA-------CPY----CRRAAQAARCAA 144 (244)
T ss_pred ccCCCCCceEEEEecCcCccHHHHHHH-HHHHhhh-cCC-CceEEEEeecCCCC-------cHH----HHHHHHHHHHhc
Confidence 334455999999999999999665433 3333331 222 34444444322221 332 2 1334445554
Q ss_pred hhccCccchhhhhhhhcchhccCchhhHHHHHhhcC-CC--c--ccccccccCCchhHHHHHHHHhhccCCCCCceeeEE
Q 043330 85 NVLKNVNKYYGFIYCIEFLAIEGRHKDWQTCFNTLG-LP--A--KPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWV 159 (225)
Q Consensus 85 ~~~~~~~~~~~fI~C~~~~~~~~~~~~~~~Ca~~~g-ld--~--~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI 159 (225)
+.-. ..+|.|..=+.+... .....+..|+.... .. . .....|........++.+.-+....+ .+...|++
T Consensus 145 ~~~~--~~y~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~gTPt~ 219 (244)
T COG1651 145 DQGI--VRYWAFHDALFGSQA-EAWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQL--GVNGTPTF 219 (244)
T ss_pred cccc--hhHHHHHHHHhhccc-cchhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhc--CCCcCCeE
Confidence 4221 357787776665431 22334455655321 11 1 35666665445566666666655555 58999999
Q ss_pred EECCeechh--hHhhHHHHH
Q 043330 160 LVNNQAIRN--DYENFTAYV 177 (225)
Q Consensus 160 ~iNG~~~~~--~~~nl~~~I 177 (225)
+|||..+.. ....|...|
T Consensus 220 ~v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 220 IVNGKLVPGLPDLDELKAII 239 (244)
T ss_pred EECCeeecCCCCHHHHHHHH
Confidence 999985432 234454443
No 13
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.09 E-value=0.21 Score=43.68 Aligned_cols=169 Identities=13% Similarity=0.136 Sum_probs=100.7
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceE--EEEEEEeeeeeecCCCCeee------c----------CC
Q 043330 9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIIN--LRLVPWGDANISKSNNACIC------K----------HG 70 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vd--l~lvP~G~a~~~~~~~~~~C------q----------HG 70 (225)
...+|+|+||..=.||.|--. ...|..+.. .+.+.++ +...||--.-..... +..= . |.
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~-~~~~~~~v~i~w~pf~l~p~~~~~-g~~~~~~l~~k~g~~~~~~~~~~ 78 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALA-EYPQEVRVEIRWRPFELDPDLPPE-GLDRKEYLAQKYGISEEQKAAHA 78 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHH-hcCcceeEEEEecccccCCCCCcc-cccHHHHHHHHhCccHHHHHHHH
Confidence 467899999999999999433 344555555 4554444 444555422111000 0000 0 00
Q ss_pred -----hhh-----------hccChhhhhhhhhcc-Ccc-chhhhhhhhcchhcc-----CchhhHHHHHhhcCCCccccc
Q 043330 71 -----PDE-----------CLLNEVEACAINVLK-NVN-KYYGFIYCIEFLAIE-----GRHKDWQTCFNTLGLPAKPVL 127 (225)
Q Consensus 71 -----~~E-----------C~gN~iqaC~i~~~~-~~~-~~~~fI~C~~~~~~~-----~~~~~~~~Ca~~~gld~~~I~ 127 (225)
-.| =..|.+.||-+.++- ... .+..|+.=+.+.... +..+..-.||.++|+|.+.+.
T Consensus 79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~ 158 (225)
T COG2761 79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK 158 (225)
T ss_pred HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence 111 234556777665542 122 477777777655421 334556799999999998888
Q ss_pred ccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeec-h--hhHhhHHHHHHHhhc
Q 043330 128 DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAI-R--NDYENFTAYVCRAYK 182 (225)
Q Consensus 128 ~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~--~~~~nl~~~IC~~y~ 182 (225)
+=..|+...+=+..-.+.+..+ .++-||+.+|+|.+. . ...+-|...|=....
T Consensus 159 ~~L~s~~~~~avr~d~~~A~e~--gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 159 ADLASDAAKDAVRQDEAAAQEM--GIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHhChHHHHHHHHHHHHHHHC--CCccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence 8888877777776666666655 689999999977652 2 123445555544443
No 14
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.80 E-value=0.97 Score=39.83 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=34.5
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEee
Q 043330 8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGD 55 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~ 55 (225)
+...+..|.||..-.||+|++|-.+ +.+..+ . .-+.++++|++-
T Consensus 114 ~~~ak~~I~vFtDp~CpyC~kl~~~-l~~~~~--~-g~V~v~~ip~~~ 157 (251)
T PRK11657 114 KADAPRIVYVFADPNCPYCKQFWQQ-ARPWVD--S-GKVQLRHILVGI 157 (251)
T ss_pred CCCCCeEEEEEECCCChhHHHHHHH-HHHHhh--c-CceEEEEEeccc
Confidence 4577889999999999999999644 667654 2 348888998864
No 15
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=86.43 E-value=1 Score=31.58 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=32.3
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeee
Q 043330 15 LSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANI 58 (225)
Q Consensus 15 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~ 58 (225)
|.+|+--.||.|..+. .+|.++.. ...+-++|.++|+.-...
T Consensus 1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~~~ 42 (98)
T cd02972 1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLLGG 42 (98)
T ss_pred CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccCCC
Confidence 5689999999999995 55777654 456779999999875543
No 16
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=82.86 E-value=1.7 Score=34.52 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=26.4
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330 6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG 54 (225)
Q Consensus 6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 54 (225)
+++...++++.|+.|+=||||++++ =.|..+.+ ....++|+++.-.
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~v-P~l~kiae--~~p~i~~~~i~rd 81 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNV-PVLAKIAE--ANPNIEVRIILRD 81 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHH-HHHHHHHH--H-TTEEEEEE-HH
T ss_pred HHhcCCCcEEEEEECCCchhHHHHH-HHHHHHHH--hCCCCeEEEEEec
Confidence 3456678999999999999999985 22333333 3446788887654
No 17
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=80.12 E-value=3.4 Score=34.47 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=32.9
Q ss_pred CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeee
Q 043330 7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA 56 (225)
Q Consensus 7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a 56 (225)
.....++.|.+|..-.||+|++|.. .|.+ ..+-+.|.++||.-.
T Consensus 73 g~~~~~~~i~~f~D~~Cp~C~~~~~-~l~~-----~~~~v~v~~~~~p~~ 116 (197)
T cd03020 73 GKGNGKRVVYVFTDPDCPYCRKLEK-ELKP-----NADGVTVRIFPVPIL 116 (197)
T ss_pred cCCCCCEEEEEEECCCCccHHHHHH-HHhh-----ccCceEEEEEEcCcC
Confidence 3456789999999999999999953 3444 234578888888643
No 18
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=79.85 E-value=3.7 Score=27.71 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=15.6
Q ss_pred eEEEEEEEeCChhhHHH
Q 043330 13 VNLSVYYETLSPTCSNF 29 (225)
Q Consensus 13 V~V~vyyESlCPds~~F 29 (225)
|+|.+|+-+-||.|.+.
T Consensus 1 ~~v~~f~~~~C~~C~~~ 17 (67)
T cd02973 1 VNIEVFVSPTCPYCPDA 17 (67)
T ss_pred CEEEEEECCCCCCcHHH
Confidence 78999999999999776
No 19
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=79.06 E-value=7.6 Score=29.12 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeech
Q 043330 113 QTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIR 167 (225)
Q Consensus 113 ~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 167 (225)
.+-+.+.|+++. +.+--..+.+.++.....+.|. ...||.|+|||+++.
T Consensus 25 k~~L~~~~i~~~-~vdid~~~~~~~~~~~l~~~tg-----~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 25 KRLLLTLGVNPA-VHEIDKEPAGKDIENALSRLGC-----SPAVPAVFVGGKLVG 73 (99)
T ss_pred HHHHHHcCCCCE-EEEcCCCccHHHHHHHHHHhcC-----CCCcCeEEECCEEEc
Confidence 344566777664 2223345777888888877663 578999999999875
No 20
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=79.03 E-value=4.1 Score=28.26 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=19.5
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHh
Q 043330 13 VNLSVYYETLSPTCSNFIVKNLEGVFN 39 (225)
Q Consensus 13 V~V~vyyESlCPds~~Fi~~qL~p~~~ 39 (225)
|+|.||+-+-||.|+... ..|..+..
T Consensus 1 ~~v~~f~~~~C~~C~~~~-~~l~~l~~ 26 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAK-RVVEEVAK 26 (82)
T ss_pred CEEEEEECCCCcchHHHH-HHHHHHHH
Confidence 789999999999998873 33444443
No 21
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=73.12 E-value=1.5 Score=36.41 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=36.3
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccc-eEEEEEEEeeeeeec-CCCCeeecCChh
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISI-INLRLVPWGDANISK-SNNACICKHGPD 72 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~-vdl~lvP~G~a~~~~-~~~~~~CqHG~~ 72 (225)
..||-+-.|--+.||.|+.| +-.|.++|+ .+.+- -.|++|-...-+... ...-+.++||+-
T Consensus 32 ~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe-~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDF-TPILKDFYE-ELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CCcEEEEEEEEEECCchhhC-CchHHHHHH-HHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 34766666667899999999 677889988 45542 135555332111110 012367788764
No 22
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=70.88 E-value=14 Score=25.45 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeechhhHhhHHH
Q 043330 112 WQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRNDYENFTA 175 (225)
Q Consensus 112 ~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~~~~nl~~ 175 (225)
+...+++.|+++..+ +..+.. ....+..+.+ + ...||.|+|||+++.. .++|.+
T Consensus 17 a~~~L~~~gi~~~~~-di~~~~---~~~~el~~~~----g-~~~vP~v~i~~~~iGg-~~~~~~ 70 (73)
T cd03027 17 VRLFLREKGLPYVEI-NIDIFP---ERKAELEERT----G-SSVVPQIFFNEKLVGG-LTDLKS 70 (73)
T ss_pred HHHHHHHCCCceEEE-ECCCCH---HHHHHHHHHh----C-CCCcCEEEECCEEEeC-HHHHHh
Confidence 556777888888744 333322 2222222222 2 3678999999998854 334443
No 23
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=70.45 E-value=8.2 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.2
Q ss_pred cCCchhHHHHHHHHhhccCCCCCceeeEEEECCeech
Q 043330 131 KSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIR 167 (225)
Q Consensus 131 ~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 167 (225)
...+|.+|+....+.|.+ +.||.|+|||+++.
T Consensus 48 ~~~~g~eiq~~l~~~tg~-----~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 48 EDEDGSEIQKALKKLTGQ-----RTVPNVFIGGKFIG 79 (104)
T ss_pred CCCCcHHHHHHHHHhcCC-----CCCCEEEECCEEEc
Confidence 447888998888877754 58999999999985
No 24
>PF13728 TraF: F plasmid transfer operon protein
Probab=68.94 E-value=1.7 Score=37.48 Aligned_cols=42 Identities=12% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330 7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG 54 (225)
Q Consensus 7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 54 (225)
+.-.++.-+-+||+|-||+|..| .|++. .+.+.-.|+++|+.
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~-----~pil~-~~~~~yg~~v~~vs 157 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQ-----APILQ-QFADKYGFSVIPVS 157 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHH-----HHHHH-HHHHHhCCEEEEEe
Confidence 33456778899999999999887 56666 46666688888875
No 25
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=68.26 E-value=5.9 Score=33.35 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHhhcCCCccccc---ccccCCchhHHHHHHHHhhccCCCCCceeeEEEECC
Q 043330 113 QTCFNTLGLPAKPVL---DCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNN 163 (225)
Q Consensus 113 ~~Ca~~~gld~~~I~---~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 163 (225)
..++.+.|+|++.+. .-..+..+.+.+.+..++..++ ++.-||+++||+
T Consensus 136 ~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~--Gv~GVP~fvv~~ 187 (209)
T cd03021 136 SVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKY--GAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEEc
Confidence 589999999876544 4445677777777776655554 789999999964
No 26
>PHA03050 glutaredoxin; Provisional
Probab=67.33 E-value=20 Score=27.47 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=30.4
Q ss_pred HHHHHhhcCC---CcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeech
Q 043330 112 WQTCFNTLGL---PAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIR 167 (225)
Q Consensus 112 ~~~Ca~~~gl---d~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 167 (225)
+...+++.|+ ++.. .+--+...+.++..+..+.|. .+.||.|+|||+++.
T Consensus 29 ak~~L~~~~i~~~~~~~-i~i~~~~~~~~~~~~l~~~tG-----~~tVP~IfI~g~~iG 81 (108)
T PHA03050 29 ALDILNKFSFKRGAYEI-VDIKEFKPENELRDYFEQITG-----GRTVPRIFFGKTSIG 81 (108)
T ss_pred HHHHHHHcCCCcCCcEE-EECCCCCCCHHHHHHHHHHcC-----CCCcCEEEECCEEEe
Confidence 3455666676 2221 111123345567666666664 478999999999875
No 27
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=65.71 E-value=20 Score=25.55 Aligned_cols=41 Identities=15% Similarity=0.406 Sum_probs=28.5
Q ss_pred CceEEEEEEEeCChhhHHHHHHhhHHHHhhccc--cceEEEEEEE
Q 043330 11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLI--SIINLRLVPW 53 (225)
Q Consensus 11 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~--~~vdl~lvP~ 53 (225)
.|+.+-.|+-+-||.|+.++ ..|..+++ ++. +-++|=.|..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~-~~l~~l~~-~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL-PKLKELYK-KYKKKDDVEFVFVSL 43 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH-HHHHHHHH-HHTTTTTEEEEEEE-
T ss_pred CCEEEEEEECCCCHHHHHHH-HHHHHHHH-HhCCCCCEEEEEEEe
Confidence 36788899999999999986 44777776 455 5555555554
No 28
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=64.25 E-value=5.9 Score=28.10 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=17.1
Q ss_pred CCCCceEEEEEEEeCChhhHHH
Q 043330 8 AKPGNVNLSVYYETLSPTCSNF 29 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~F 29 (225)
+...+-+|+||.-+-||+|.+-
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~a 24 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKA 24 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHH
Confidence 3445557889999999999876
No 29
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=62.92 E-value=16 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEE
Q 043330 8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVP 52 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP 52 (225)
.=..+|+|.+|+-.-||+|... .++..-+. ...+.+++..+=
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~--~~~~~~l~-~~~~~i~~~~vd 50 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDV--VQALNLMA-VLNPNIEHEMID 50 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHH--HHHHHHHH-HHCCCceEEEEE
Confidence 4567899999999999999865 23333332 123335555543
No 30
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=62.60 E-value=8.5 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=16.2
Q ss_pred CceeeEEEECCeechhhHhhHHHH
Q 043330 153 HTILPWVLVNNQAIRNDYENFTAY 176 (225)
Q Consensus 153 ~~~VPwI~iNG~~~~~~~~nl~~~ 176 (225)
...||.|+|||+++.. ..+|...
T Consensus 56 ~~~vP~ifi~g~~igg-~~~~~~~ 78 (85)
T PRK11200 56 VETVPQIFVDQKHIGG-CTDFEAY 78 (85)
T ss_pred CCcCCEEEECCEEEcC-HHHHHHH
Confidence 4689999999998753 3444433
No 31
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=59.96 E-value=7.6 Score=25.57 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=12.5
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|.+|+...||+|++.
T Consensus 1 ~v~ly~~~~Cp~C~~~ 16 (72)
T cd02066 1 KVVVFSKSTCPYCKRA 16 (72)
T ss_pred CEEEEECCCCHHHHHH
Confidence 3678888888888766
No 32
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=59.93 E-value=23 Score=30.72 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEee
Q 043330 7 PAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGD 55 (225)
Q Consensus 7 ~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~ 55 (225)
.....++.|.+|..-.||+|+++-.. |....+ .+ +.+.+++|..
T Consensus 103 g~~~~k~~I~vFtDp~CpyCkkl~~~-l~~~~~---~~-v~v~~~~~P~ 146 (232)
T PRK10877 103 KAPQEKHVITVFTDITCGYCHKLHEQ-MKDYNA---LG-ITVRYLAFPR 146 (232)
T ss_pred cCCCCCEEEEEEECCCChHHHHHHHH-HHHHhc---CC-eEEEEEeccC
Confidence 34567889999999999999999533 443322 12 6777766654
No 33
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=58.65 E-value=6.9 Score=26.64 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=14.0
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|.||+-+-||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 4789999999999885
No 34
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=58.28 E-value=7.9 Score=34.37 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=29.3
Q ss_pred CceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330 11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG 54 (225)
Q Consensus 11 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 54 (225)
..--+-+||+|-||+|..| .|++. .+.+.-.|.++|+.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~-----aPil~-~fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL-----AQVIN-DFRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHH-----HHHHH-HHHHHhCCeEEEEe
Confidence 3456789999999999877 57666 46666778888875
No 35
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=55.92 E-value=19 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEE
Q 043330 5 SLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLV 51 (225)
Q Consensus 5 ~~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lv 51 (225)
+++.-..|+.|-.|+-+-||.|++.+.. |..+++ ++.+ -++.+|
T Consensus 17 ~l~~~~gk~vvl~F~a~~C~~C~~~~p~-l~~l~~-~~~~-~~~~vi 60 (126)
T cd03012 17 SLAQLRGKVVLLDFWTYCCINCLHTLPY-LTDLEQ-KYKD-DGLVVI 60 (126)
T ss_pred CHHHhCCCEEEEEEECCCCccHHHHHHH-HHHHHH-HcCc-CCeEEE
Confidence 3444466888999999999999988644 777776 4554 345555
No 36
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.76 E-value=17 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=23.9
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEE
Q 043330 15 LSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPW 53 (225)
Q Consensus 15 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~ 53 (225)
|++|+.-.||.|--.. ..|..+.. .+. ++|++.||
T Consensus 1 i~~~~D~~cP~cy~~~-~~l~~~~~-~~~--~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAH-ERLPALAA-RHG--ATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHH-HHHHHHHH-HhC--CeeEEeee
Confidence 5799999999995542 33444443 232 78888888
No 37
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=55.59 E-value=10 Score=26.33 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=13.1
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|.+|+...||+|...
T Consensus 1 ~v~~y~~~~Cp~C~~~ 16 (82)
T cd03419 1 PVVVFSKSYCPYCKRA 16 (82)
T ss_pred CEEEEEcCCCHHHHHH
Confidence 3788898999999776
No 38
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=55.31 E-value=20 Score=27.25 Aligned_cols=36 Identities=14% Similarity=0.342 Sum_probs=25.0
Q ss_pred CCCCCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHh
Q 043330 3 EASLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFN 39 (225)
Q Consensus 3 ~~~~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 39 (225)
.-+++.-..++-|-.||-+-||.|+..+ ..|..+++
T Consensus 10 ~v~l~~~~gk~vll~Fwa~wC~~C~~~~-p~l~~~~~ 45 (131)
T cd03009 10 KVPVSSLEGKTVGLYFSASWCPPCRAFT-PKLVEFYE 45 (131)
T ss_pred CccHHHhCCcEEEEEEECCCChHHHHHh-HHHHHHHH
Confidence 3345555677888888899999999874 33555554
No 39
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=53.60 E-value=52 Score=23.85 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeechh
Q 043330 112 WQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIRN 168 (225)
Q Consensus 112 ~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~ 168 (225)
+..-++..|+++..+.-= . ..++..+..+.|. ...||.|+|||+++..
T Consensus 29 ak~~L~~~~i~y~~idv~-~---~~~~~~~l~~~~g-----~~tvP~vfi~g~~iGG 76 (90)
T cd03028 29 VVQILNQLGVDFGTFDIL-E---DEEVRQGLKEYSN-----WPTFPQLYVNGELVGG 76 (90)
T ss_pred HHHHHHHcCCCeEEEEcC-C---CHHHHHHHHHHhC-----CCCCCEEEECCEEEeC
Confidence 445667778887655421 1 1345554544443 4679999999998753
No 40
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=53.27 E-value=31 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=19.0
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhhHH
Q 043330 9 KPGNVNLSVYYETLSPTCSNFIVKNLEG 36 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p 36 (225)
...+..|-+|+-.-||+|+.+-.. |.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~-~~~ 29 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKE-LFP 29 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHH-HHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHH-HHH
Confidence 456778889999999999998544 554
No 41
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=51.69 E-value=13 Score=24.67 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=9.2
Q ss_pred EEEEEEeCChhhHHH
Q 043330 15 LSVYYETLSPTCSNF 29 (225)
Q Consensus 15 V~vyyESlCPds~~F 29 (225)
|.||...-||+|.+.
T Consensus 1 V~vy~~~~C~~C~~~ 15 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKA 15 (60)
T ss_dssp EEEEESTTSHHHHHH
T ss_pred cEEEEcCCCcCHHHH
Confidence 456666666666555
No 42
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=51.64 E-value=10 Score=26.27 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=12.4
Q ss_pred EEEEEEeCChhhHHH
Q 043330 15 LSVYYETLSPTCSNF 29 (225)
Q Consensus 15 V~vyyESlCPds~~F 29 (225)
|.+|+.+.||+|.+.
T Consensus 1 V~~f~~~~Cp~C~~~ 15 (84)
T TIGR02180 1 VVVFSKSYCPYCKKA 15 (84)
T ss_pred CEEEECCCChhHHHH
Confidence 578888899999877
No 43
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=51.46 E-value=12 Score=33.38 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=29.4
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG 54 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 54 (225)
.++--+-+||.|.||+|+.| .|++. .+.+.-.|+++|+.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~-----apil~-~fa~~ygi~v~~VS 187 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKM-----APVIQ-AFAKEYGISVIPIS 187 (256)
T ss_pred HhceeEEEEECCCCchhHHH-----HHHHH-HHHHHhCCeEEEEe
Confidence 34567889999999999876 56666 46666678888875
No 44
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=49.42 E-value=16 Score=30.94 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=23.5
Q ss_pred EEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEe
Q 043330 15 LSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWG 54 (225)
Q Consensus 15 V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G 54 (225)
|-+|+.|-||.|+.++- .|..+++ +. .|.++++.
T Consensus 73 lV~FwaswCp~C~~e~P-~L~~l~~-~~----g~~Vi~Vs 106 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDP-VLKQLAQ-QY----GFSVFPYT 106 (181)
T ss_pred EEEEECCCCHhHHHHHH-HHHHHHH-Hc----CCEEEEEE
Confidence 77899999999999952 2444444 22 46777664
No 45
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=49.32 E-value=54 Score=24.33 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeech
Q 043330 112 WQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIR 167 (225)
Q Consensus 112 ~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 167 (225)
+..-+...|+++..+.-= + ..++..+..+.|. ...||.|+|||+++.
T Consensus 33 ak~lL~~~~i~~~~~di~-~---~~~~~~~l~~~tg-----~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 33 AVQILKACGVPFAYVNVL-E---DPEIRQGIKEYSN-----WPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHHcCCCEEEEECC-C---CHHHHHHHHHHhC-----CCCCCEEEECCEEEe
Confidence 334456678877644321 1 2344444444443 368999999999875
No 46
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=48.98 E-value=14 Score=25.19 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.6
Q ss_pred eeeEEEECCeech
Q 043330 155 ILPWVLVNNQAIR 167 (225)
Q Consensus 155 ~VPwI~iNG~~~~ 167 (225)
.||.|+|||+.+.
T Consensus 51 ~vP~v~i~g~~ig 63 (75)
T cd03418 51 TVPQIFIGDVHIG 63 (75)
T ss_pred ccCEEEECCEEEe
Confidence 7888889988764
No 47
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=48.19 E-value=51 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcccc
Q 043330 9 KPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLIS 44 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~ 44 (225)
..+++-+-+|+.+-||.|+.+.. .|.++.. ++.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~-~l~~l~~-~~~~ 44 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKP-ILNKVID-EFDG 44 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHH-HHHHHHH-HhCC
Confidence 47788899999999999999843 3555554 4444
No 48
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=47.89 E-value=18 Score=24.87 Aligned_cols=16 Identities=13% Similarity=0.411 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|+||.-+.||+|++.
T Consensus 2 ~v~ly~~~~C~~C~ka 17 (73)
T cd03027 2 RVTIYSRLGCEDCTAV 17 (73)
T ss_pred EEEEEecCCChhHHHH
Confidence 5889999999999887
No 49
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=45.91 E-value=13 Score=27.82 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=15.1
Q ss_pred EEEEEEEeCChhhHHHH
Q 043330 14 NLSVYYETLSPTCSNFI 30 (225)
Q Consensus 14 ~V~vyyESlCPds~~Fi 30 (225)
+|.||.-+.||+|.+..
T Consensus 9 ~Vvvysk~~Cp~C~~ak 25 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVK 25 (99)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 58999999999999873
No 50
>PHA03050 glutaredoxin; Provisional
Probab=45.69 E-value=13 Score=28.42 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|.||.-+-||+|.+.
T Consensus 14 ~V~vys~~~CPyC~~a 29 (108)
T PHA03050 14 KVTIFVKFTCPFCRNA 29 (108)
T ss_pred CEEEEECCCChHHHHH
Confidence 5899999999999876
No 51
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.34 E-value=38 Score=28.37 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=25.2
Q ss_pred EEEEEEEeCChhhHHHH-HHhhHHHHhhccccceEEEEEEE
Q 043330 14 NLSVYYETLSPTCSNFI-VKNLEGVFNNDLISIINLRLVPW 53 (225)
Q Consensus 14 ~V~vyyESlCPds~~Fi-~~qL~p~~~~~l~~~vdl~lvP~ 53 (225)
+|++|+.-.||.| || ..+|..+.. ..-++|++.||
T Consensus 2 ~Id~~~D~vcPwc--ylg~~~l~~~~~---~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYS--YLAFEVLCRYQT---AWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHH--HHHHHHHHHHHH---HhCCeEEEEee
Confidence 5889999999999 54 344554443 23478999998
No 52
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=43.78 E-value=48 Score=23.55 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=23.7
Q ss_pred CceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEE
Q 043330 11 GNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRL 50 (225)
Q Consensus 11 ~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~l 50 (225)
.+.-+-.||-+-|+.|+.+. .++..+.. .+.+..+|.+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~-~~~~~~~~-~~~~~~~~~~ 55 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALA-PIYEELAE-KLKGDDNVVI 55 (104)
T ss_pred CCcEEEEEECCCCHHHHHHh-hHHHHHHH-HhcCCCCEEE
Confidence 36677889999999999874 33444443 3444333333
No 53
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=43.49 E-value=22 Score=25.34 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=15.0
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|+||+-+-||.|.+.
T Consensus 2 ~v~iy~~~~C~~C~~a 17 (85)
T PRK11200 2 FVVIFGRPGCPYCVRA 17 (85)
T ss_pred EEEEEeCCCChhHHHH
Confidence 7999999999999887
No 54
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=43.45 E-value=18 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=12.9
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|.+|+.+-||+|.+.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 4788888889999874
No 55
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=16 Score=26.38 Aligned_cols=16 Identities=6% Similarity=0.362 Sum_probs=12.4
Q ss_pred CCceeeEEEECCeech
Q 043330 152 PHTILPWVLVNNQAIR 167 (225)
Q Consensus 152 ~~~~VPwI~iNG~~~~ 167 (225)
+.+.||.|+|||++..
T Consensus 50 g~~tvP~I~i~~~~ig 65 (80)
T COG0695 50 GQRTVPQIFIGGKHVG 65 (80)
T ss_pred CCCCcCEEEECCEEEe
Confidence 3578899999998764
No 56
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=42.72 E-value=15 Score=24.34 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=12.9
Q ss_pred EEEEEEeCChhhHHH
Q 043330 15 LSVYYETLSPTCSNF 29 (225)
Q Consensus 15 V~vyyESlCPds~~F 29 (225)
|++|+-+-||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 789999999999875
No 57
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=41.74 E-value=15 Score=25.53 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=12.6
Q ss_pred CceeeEEEECCeech
Q 043330 153 HTILPWVLVNNQAIR 167 (225)
Q Consensus 153 ~~~VPwI~iNG~~~~ 167 (225)
...||.|+|||+.+.
T Consensus 47 ~~~vP~i~i~g~~ig 61 (79)
T TIGR02181 47 RRTVPQIFIGDVHVG 61 (79)
T ss_pred CCCcCEEEECCEEEc
Confidence 478999999999874
No 58
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=40.27 E-value=65 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHhhHHHHh
Q 043330 8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFN 39 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 39 (225)
....+..|-.|+-+-||.|++++ ..|.....
T Consensus 16 ~~~~k~~ll~f~~~~C~~C~~~~-~~l~~~~~ 46 (116)
T cd02966 16 DLKGKVVLVNFWASWCPPCRAEM-PELEALAK 46 (116)
T ss_pred HcCCCEEEEEeecccChhHHHHh-HHHHHHHH
Confidence 33467888889999999999874 33454444
No 59
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=39.87 E-value=13 Score=29.11 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=27.6
Q ss_pred eCChhhHHHHHHhhHHHHhhccccceEEEEEEEeeeeee
Q 043330 21 TLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDANIS 59 (225)
Q Consensus 21 SlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a~~~ 59 (225)
-.||+|..+ +-|+-.+. .+.+.+||+.|+|-+.+..
T Consensus 22 f~Cp~c~~i--EGlLa~~P-~l~~~ldV~rV~f~RPR~~ 57 (112)
T PF11287_consen 22 FYCPHCAAI--EGLLASFP-DLRERLDVRRVDFPRPRQA 57 (112)
T ss_pred EECCchHHH--HhHHhhCh-hhhhcccEEEeCCCCchHH
Confidence 369999765 44666666 5889999999999877653
No 60
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=39.46 E-value=23 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=12.1
Q ss_pred CceeeEEEECCeechh
Q 043330 153 HTILPWVLVNNQAIRN 168 (225)
Q Consensus 153 ~~~VPwI~iNG~~~~~ 168 (225)
...||.|+|||+++..
T Consensus 48 ~~~vP~ifi~g~~igg 63 (72)
T cd03029 48 AMTVPQVFIDGELIGG 63 (72)
T ss_pred CCCcCeEEECCEEEeC
Confidence 4678888888887653
No 61
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=39.16 E-value=26 Score=27.17 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=15.4
Q ss_pred CceEEEEEEEeCChhhHHH
Q 043330 11 GNVNLSVYYETLSPTCSNF 29 (225)
Q Consensus 11 ~kV~V~vyyESlCPds~~F 29 (225)
.+.-|-.|+-+-||+|+.|
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~ 41 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKF 41 (122)
T ss_pred CCcEEEEEECCCChhHHHH
Confidence 3445777899999999988
No 62
>PRK10824 glutaredoxin-4; Provisional
Probab=38.69 E-value=1.4e+02 Score=23.23 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=28.2
Q ss_pred HHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeech
Q 043330 113 QTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIR 167 (225)
Q Consensus 113 ~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 167 (225)
..-+...|+++..+.-=. ..++.....+.| ....||-|+|||+++.
T Consensus 37 k~lL~~~~i~~~~idi~~----d~~~~~~l~~~s-----g~~TVPQIFI~G~~IG 82 (115)
T PRK10824 37 VQALSACGERFAYVDILQ----NPDIRAELPKYA-----NWPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHcCCCceEEEecC----CHHHHHHHHHHh-----CCCCCCeEEECCEEEc
Confidence 344556677765443211 134555555555 3479999999999975
No 63
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=37.97 E-value=47 Score=25.46 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccc-eEEEEE
Q 043330 6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISI-INLRLV 51 (225)
Q Consensus 6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~-vdl~lv 51 (225)
++.-..|+-|-.|+-+-||.|+..+- .|..+++ .+.+. -+++++
T Consensus 12 l~~~~Gk~vll~F~atwC~~C~~~~p-~l~~l~~-~~~~~~~~v~vi 56 (132)
T cd02964 12 VSALEGKTVGLYFSASWCPPCRAFTP-KLVEFYE-KLKEEGKNFEIV 56 (132)
T ss_pred HHHhCCCEEEEEEECCCCchHHHHHH-HHHHHHH-HHhhcCCCeEEE
Confidence 33446788888889999999999853 3555555 34332 245554
No 64
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=37.95 E-value=70 Score=23.34 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCCCCC-CceEEEEEEEeCChhhHHHH
Q 043330 5 SLPAKP-GNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 5 ~~~~~~-~kV~V~vyyESlCPds~~Fi 30 (225)
+++.-. .++.|-.||-+-||.|+..+
T Consensus 14 ~l~~~~~gk~vvl~F~~~wC~~C~~~~ 40 (114)
T cd02967 14 RIGGISPGRPTLLFFLSPTCPVCKKLL 40 (114)
T ss_pred EcccccCCCeEEEEEECCCCcchHhHh
Confidence 344433 67778888999999999875
No 65
>PRK10638 glutaredoxin 3; Provisional
Probab=37.91 E-value=29 Score=24.60 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=11.8
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|++|..+-||+|++.
T Consensus 3 ~v~ly~~~~Cp~C~~a 18 (83)
T PRK10638 3 NVEIYTKATCPFCHRA 18 (83)
T ss_pred cEEEEECCCChhHHHH
Confidence 4677777888877765
No 66
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=37.57 E-value=48 Score=26.24 Aligned_cols=35 Identities=9% Similarity=0.221 Sum_probs=24.4
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhcccc
Q 043330 8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLIS 44 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~ 44 (225)
.-..++.|-.||-+-||.|+... ..|..+.. ++.+
T Consensus 58 ~~~~k~~~l~f~a~~C~~C~~~~-~~l~~~~~-~~~~ 92 (173)
T PRK03147 58 DLKGKGVFLNFWGTWCKPCEKEM-PYMNELYP-KYKE 92 (173)
T ss_pred HcCCCEEEEEEECCcCHHHHHHH-HHHHHHHH-Hhhc
Confidence 33567777888899999998875 44666655 4443
No 67
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=36.96 E-value=22 Score=25.60 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=15.2
Q ss_pred ceeeEEEECCeechhhHhhHHHH
Q 043330 154 TILPWVLVNNQAIRNDYENFTAY 176 (225)
Q Consensus 154 ~~VPwI~iNG~~~~~~~~nl~~~ 176 (225)
..||.|+|||+++.. ..+|.++
T Consensus 56 ~tVP~ifi~g~~igG-~~dl~~~ 77 (86)
T TIGR02183 56 ETVPQIFVDEKHVGG-CTDFEQL 77 (86)
T ss_pred CCcCeEEECCEEecC-HHHHHHH
Confidence 679999999998754 2344443
No 68
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=36.62 E-value=58 Score=26.39 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=24.4
Q ss_pred CCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHh
Q 043330 6 LPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFN 39 (225)
Q Consensus 6 ~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 39 (225)
++.-..|+-+--|+-|-||.|+.++-. |..+++
T Consensus 20 ls~~kgk~vlL~FwAsWCppCr~e~P~-L~~ly~ 52 (146)
T cd03008 20 VARLENRVLLLFFGAVVSPQCQLFAPK-LKDFFV 52 (146)
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHH-HHHHHH
Confidence 344567888888999999999999633 555554
No 69
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=35.19 E-value=1.1e+02 Score=21.32 Aligned_cols=35 Identities=17% Similarity=0.519 Sum_probs=18.8
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEE
Q 043330 13 VNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVP 52 (225)
Q Consensus 13 V~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP 52 (225)
|+|.+ +-+-||.|.... .-+..+.. .+ + ++++++-
T Consensus 1 m~I~v-~~~~C~~C~~~~-~~~~~~~~-~~-~-i~~ei~~ 35 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELV-QLLKEAAE-EL-G-IEVEIID 35 (76)
T ss_dssp EEEEE-ECSSCTTHHHHH-HHHHHHHH-HT-T-EEEEEEE
T ss_pred CEEEE-eCCCCCCcHHHH-HHHHHHHH-hc-C-CeEEEEE
Confidence 46777 455588888553 22444444 23 3 5555543
No 70
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=34.76 E-value=75 Score=24.66 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=14.4
Q ss_pred CCceEEEEEEEe--CChhhHHH
Q 043330 10 PGNVNLSVYYET--LSPTCSNF 29 (225)
Q Consensus 10 ~~kV~V~vyyES--lCPds~~F 29 (225)
.+.+.|-.||.. .||+|+.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i 47 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDV 47 (111)
T ss_pred CCCCEEEEecCCcccCcchhhh
Confidence 344566677777 79999876
No 71
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=34.26 E-value=44 Score=26.78 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=28.5
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEE
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPW 53 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~ 53 (225)
..++.|-.|+-+-||.|++.+ ..|..+.. ++.+ -++++|-+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~-~~~~-~~v~~v~i 64 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAK-EYGA-KGVAVVAI 64 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHH-HHhh-CCeEEEEE
Confidence 678889999999999998775 45666665 4543 24555433
No 72
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=34.17 E-value=75 Score=18.87 Aligned_cols=16 Identities=25% Similarity=0.700 Sum_probs=13.5
Q ss_pred EEEEEEeCChhhHHHH
Q 043330 15 LSVYYETLSPTCSNFI 30 (225)
Q Consensus 15 V~vyyESlCPds~~Fi 30 (225)
|.+|+.+-||+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~ 16 (69)
T cd01659 1 LVLFYAPWCPFCQALR 16 (69)
T ss_pred CEEEECCCChhHHhhh
Confidence 4578999999999884
No 73
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=34.03 E-value=76 Score=22.32 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.0
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi 30 (225)
..++.|-.||.+-||.|+.+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~ 32 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA 32 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC
Confidence 678899999999999999984
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=33.31 E-value=64 Score=23.39 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=18.0
Q ss_pred CCceEEEEEEEeCChhhHHHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVK 32 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~ 32 (225)
..++-|-.||-+-||.|+.+...
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~ 32 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKV 32 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHH
Confidence 44667778889999999998533
No 75
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=32.15 E-value=1.2e+02 Score=20.79 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=19.0
Q ss_pred eEEEEEEEeCChhhHHHHHHhhHHHHh
Q 043330 13 VNLSVYYETLSPTCSNFIVKNLEGVFN 39 (225)
Q Consensus 13 V~V~vyyESlCPds~~Fi~~qL~p~~~ 39 (225)
.-|-+||.+-||.|+.+.. .+..+.+
T Consensus 17 ~~~v~f~~~~C~~C~~~~~-~~~~~~~ 42 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAP-EYEKLAK 42 (101)
T ss_pred cEEEEEECCCCHHHHhhhH-HHHHHHH
Confidence 6788889999999999843 3444443
No 76
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=31.97 E-value=45 Score=25.08 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=18.6
Q ss_pred CCCCceEEEEEEEeCChhhHHHH
Q 043330 8 AKPGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~Fi 30 (225)
....++.|-.|+-+-||.|+..+
T Consensus 22 ~~~gk~vvv~F~a~~C~~C~~~~ 44 (127)
T cd03010 22 DLKGKPYLLNVWASWCAPCREEH 44 (127)
T ss_pred HcCCCEEEEEEEcCcCHHHHHHH
Confidence 33467788888999999999875
No 77
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=31.62 E-value=97 Score=29.24 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=32.9
Q ss_pred HHHHHhhcCCCcccccccccCCchhHHHHHHHHhhccCCCCCceeeEEEECCeech
Q 043330 112 WQTCFNTLGLPAKPVLDCYKSGNGTKLLLQHAYETSHLIPPHTILPWVLVNNQAIR 167 (225)
Q Consensus 112 ~~~Ca~~~gld~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 167 (225)
+++.+++.|+++..|.- -+...+.+++.+..+.-....-+...||.|+|||+++.
T Consensus 18 aK~~L~~~gi~~~~idi-~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~ig 72 (410)
T PRK12759 18 AKSWFGANDIPFTQISL-DDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIG 72 (410)
T ss_pred HHHHHHHCCCCeEEEEC-CCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEe
Confidence 55677888988764332 24455555555543210011124578999999999874
No 78
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=31.61 E-value=1e+02 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=18.0
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 043330 9 KPGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi 30 (225)
...++-|-.||-+-||.|+.+.
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~ 39 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMA 39 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhH
Confidence 4567778888999999999874
No 79
>PRK09381 trxA thioredoxin; Provisional
Probab=30.97 E-value=1.3e+02 Score=21.93 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=17.0
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi 30 (225)
.++.-|-.||-+-||.|+.+.
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~ 40 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIA 40 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHh
Confidence 355678888999999999884
No 80
>PRK10329 glutaredoxin-like protein; Provisional
Probab=30.51 E-value=39 Score=24.29 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=12.9
Q ss_pred EEEEEEEeCChhhHHH
Q 043330 14 NLSVYYETLSPTCSNF 29 (225)
Q Consensus 14 ~V~vyyESlCPds~~F 29 (225)
+|+||.-+-||+|.+.
T Consensus 2 ~v~lYt~~~Cp~C~~a 17 (81)
T PRK10329 2 RITIYTRNDCVQCHAT 17 (81)
T ss_pred EEEEEeCCCCHhHHHH
Confidence 5788888888888774
No 81
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=29.96 E-value=60 Score=25.60 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=29.8
Q ss_pred CCCCCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEE
Q 043330 5 SLPAKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPW 53 (225)
Q Consensus 5 ~~~~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~ 53 (225)
+++.-..|+-|-+++-+-||.|+.-+. .|..++. ++.+ -+++++-+
T Consensus 16 ~l~~~~Gk~vvv~~~as~C~~c~~~~~-~l~~l~~-~~~~-~~~~v~~i 61 (153)
T TIGR02540 16 SLEKYRGKVSLVVNVASECGFTDQNYR-ALQELHR-ELGP-SHFNVLAF 61 (153)
T ss_pred cHHHhCCCEEEEEEeCCCCCchhhhHH-HHHHHHH-HHhh-CCeEEEEE
Confidence 344455677778899999999998864 3666665 3443 14555433
No 82
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=29.70 E-value=71 Score=24.27 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCCceEEEEEEEeCChh-hHHHHHHhhHHHHhhccccc--eEEEEE
Q 043330 9 KPGNVNLSVYYETLSPT-CSNFIVKNLEGVFNNDLISI--INLRLV 51 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPd-s~~Fi~~qL~p~~~~~l~~~--vdl~lv 51 (225)
-..++.|-+|+-+-||. |.+.+.. |..++. .+.+. -++.++
T Consensus 20 ~~gk~~vl~f~~~~C~~~C~~~l~~-l~~~~~-~~~~~~~~~v~~v 63 (142)
T cd02968 20 LKGKPVLVYFGYTHCPDVCPTTLAN-LAQALK-QLGADGGDDVQVV 63 (142)
T ss_pred hCCCEEEEEEEcCCCcccCHHHHHH-HHHHHH-HhhHhhcCceEEE
Confidence 35678888889999998 9888644 666665 45442 135554
No 83
>PTZ00051 thioredoxin; Provisional
Probab=29.59 E-value=1.4e+02 Score=21.10 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=20.5
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVF 38 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~ 38 (225)
..++-|-.||.+-||.|+.+. ..|..+.
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~-~~l~~l~ 44 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIA-PFYEECS 44 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHh-HHHHHHH
Confidence 456778889999999999984 3344333
No 84
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=75 Score=25.46 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=20.1
Q ss_pred EeCChhhHHHHHHhhHHHHhhccccceEEEEEEEeee
Q 043330 20 ETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGDA 56 (225)
Q Consensus 20 ESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~a 56 (225)
+|-||||++.. -.+..++. ....-+.|-.|.-|+-
T Consensus 42 qSWCPdCV~AE-Pvi~~alk-~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 42 QSWCPDCVAAE-PVINEALK-HAPEDVHFVHVYVGNR 76 (128)
T ss_pred CcCCchHHHhh-HHHHHHHH-hCCCceEEEEEEecCC
Confidence 45599999872 22333443 3455566666666654
No 85
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=28.26 E-value=48 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCCCCCceEEEEEEEe-CChhhHHHHHHhhHHHHh
Q 043330 6 LPAKPGNVNLSVYYET-LSPTCSNFIVKNLEGVFN 39 (225)
Q Consensus 6 ~~~~~~kV~V~vyyES-lCPds~~Fi~~qL~p~~~ 39 (225)
++.-..|+.|-.++-+ -||.|+.-+- .|..+.+
T Consensus 23 l~~~~gk~~vv~f~~~~~Cp~C~~~~p-~l~~l~~ 56 (146)
T PF08534_consen 23 LSDFKGKPVVVNFWASAWCPPCRKELP-YLNELQE 56 (146)
T ss_dssp GGGGTTSEEEEEEESTTTSHHHHHHHH-HHHHHHH
T ss_pred HHHhCCCeEEEEEEccCCCCcchhhhh-hHHhhhh
Confidence 4445678888889999 9999998865 4555544
No 86
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=27.84 E-value=1.5e+02 Score=20.98 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=16.2
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi 30 (225)
..+.-|-+||-+-|+.|+.|.
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~ 37 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLA 37 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHh
Confidence 345566778889999999994
No 87
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=27.51 E-value=1.3e+02 Score=20.92 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.0
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi 30 (225)
.++.-|-.||..-||.|+.+.
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~ 33 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIA 33 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhC
Confidence 355678888899999999884
No 88
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=27.33 E-value=43 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=25.0
Q ss_pred EEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEEee
Q 043330 14 NLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPWGD 55 (225)
Q Consensus 14 ~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~G~ 55 (225)
+|-+|--|.||+|.+ +.+.|.. +. --..+++|+-.|-|.
T Consensus 15 ~VVifSKs~C~~c~~-~k~ll~~-~~-v~~~vvELD~~~~g~ 53 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHR-AKELLSD-LG-VNPKVVELDEDEDGS 53 (104)
T ss_pred CEEEEECCcCchHHH-HHHHHHh-CC-CCCEEEEccCCCCcH
Confidence 688999999999999 4443333 22 123466666665554
No 89
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=27.31 E-value=1.9e+02 Score=21.01 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=16.6
Q ss_pred CceEEEEEEEeCChhhHHHH
Q 043330 11 GNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 11 ~kV~V~vyyESlCPds~~Fi 30 (225)
.+.-|-.||-+-||.|+.+.
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~ 37 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLH 37 (108)
T ss_pred CCEEEEEEECCCCHHHHhhH
Confidence 45678889999999999884
No 90
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=27.29 E-value=1.7e+02 Score=20.44 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHHhhcccc
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLIS 44 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~ 44 (225)
..+.-|-.||...||.|+.+. ..|..+.. .+.+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~-~~~~~~~~-~~~~ 48 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFK-PILEKLAK-EYKD 48 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHH-HHHHHHHH-HTTT
T ss_pred cCCCEEEEEeCCCCCcccccc-ceeccccc-cccc
Confidence 356778888889999999983 33444444 3444
No 91
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=26.75 E-value=1.3e+02 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=17.6
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 043330 9 KPGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi 30 (225)
...+.-|-.||-+-||.|+.+.
T Consensus 16 ~~~~~~lv~f~a~wC~~C~~~~ 37 (109)
T cd03002 16 NTNYTTLVEFYAPWCGHCKNLK 37 (109)
T ss_pred cCCCeEEEEEECCCCHHHHhhC
Confidence 3456678888999999999873
No 92
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=26.66 E-value=37 Score=23.31 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=7.1
Q ss_pred ceeeEEEECCe
Q 043330 154 TILPWVLVNNQ 164 (225)
Q Consensus 154 ~~VPwI~iNG~ 164 (225)
..||.|++||.
T Consensus 47 ~~vP~v~~~g~ 57 (72)
T TIGR02194 47 RQVPVIVADGD 57 (72)
T ss_pred cccCEEEECCC
Confidence 45777777664
No 93
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=26.65 E-value=45 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=6.7
Q ss_pred EEEEEEeCChhhHHH
Q 043330 15 LSVYYETLSPTCSNF 29 (225)
Q Consensus 15 V~vyyESlCPds~~F 29 (225)
++||+-..||.|++-
T Consensus 2 i~Ly~~~~~p~c~kv 16 (77)
T cd03040 2 ITLYQYKTCPFCCKV 16 (77)
T ss_pred EEEEEcCCCHHHHHH
Confidence 344444444444443
No 94
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=25.85 E-value=72 Score=28.36 Aligned_cols=40 Identities=10% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCCCceEEEEEEEeCChhhHHHHHHhhHHHHhhccccceEEEEEEE
Q 043330 8 AKPGNVNLSVYYETLSPTCSNFIVKNLEGVFNNDLISIINLRLVPW 53 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~ 53 (225)
.-..++-|-.||.+-||.|+.+ .|.+. .+.+...+++++.
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~-----~P~L~-~la~~yg~~Vi~V 202 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQ-----APILQ-AFEDRYGIEVLPV 202 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHH-----hHHHH-HHHHHcCcEEEEE
Confidence 3346788889999999999887 34444 2333234566554
No 95
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=46 Score=24.60 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=13.9
Q ss_pred EEEEEeCChhhHHHHH
Q 043330 16 SVYYETLSPTCSNFIV 31 (225)
Q Consensus 16 ~vyyESlCPds~~Fi~ 31 (225)
.+|+--+||||.-|+.
T Consensus 5 ~lfgsn~Cpdca~a~e 20 (85)
T COG4545 5 KLFGSNLCPDCAPAVE 20 (85)
T ss_pred eeeccccCcchHHHHH
Confidence 6899999999998853
No 96
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=23.47 E-value=2.2e+02 Score=20.33 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.6
Q ss_pred CCceEEEEEEEeCChhhHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNF 29 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~F 29 (225)
.+++-|-.||-+-||.|+.+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~ 37 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQAL 37 (104)
T ss_pred CCCeEEEEEECCCCHHHHHH
Confidence 34577888999999999987
No 97
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.08 E-value=1.2e+02 Score=24.57 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.5
Q ss_pred ceeeEEEECCeech
Q 043330 154 TILPWVLVNNQAIR 167 (225)
Q Consensus 154 ~~VPwI~iNG~~~~ 167 (225)
..||-|+|||+++.
T Consensus 59 ~tvPqVFI~G~~IG 72 (147)
T cd03031 59 VSLPRVFVDGRYLG 72 (147)
T ss_pred CCCCEEEECCEEEe
Confidence 67999999999975
No 98
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=23.05 E-value=2.4e+02 Score=20.13 Aligned_cols=20 Identities=15% Similarity=0.549 Sum_probs=16.6
Q ss_pred CCceEEEEEEEeCChhhHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNF 29 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~F 29 (225)
..++-|-.||-.-||.|+.+
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~ 36 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDL 36 (101)
T ss_pred CCCeEEEEEECCCChHHHHh
Confidence 34778888999999999876
No 99
>PRK10996 thioredoxin 2; Provisional
Probab=22.68 E-value=1.6e+02 Score=22.95 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHHh
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVFN 39 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~~ 39 (225)
.+++-|-.||-+-||.|+.+.. .|..+..
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~-~l~~l~~ 79 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAP-IFEDVAA 79 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHH-HHHHHHH
Confidence 3677888999999999999853 3555444
No 100
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=22.28 E-value=2e+02 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.5
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 043330 9 KPGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi 30 (225)
..+++.+-.||-+-||.|+++.
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~ 40 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAME 40 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHh
Confidence 4567888999999999999873
No 101
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=21.86 E-value=1.6e+02 Score=24.81 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.3
Q ss_pred CCCceEEEEEEEeCChhhHHH
Q 043330 9 KPGNVNLSVYYETLSPTCSNF 29 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~F 29 (225)
...+|.|.+|+-+-||+|...
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHH
Confidence 467889999999999999865
No 102
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=21.84 E-value=1.1e+02 Score=23.52 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=27.4
Q ss_pred CCCCCCceEEEEEEEeC-ChhhHHHHHHhhHHHHhhccccceEEEEEEE
Q 043330 6 LPAKPGNVNLSVYYETL-SPTCSNFIVKNLEGVFNNDLISIINLRLVPW 53 (225)
Q Consensus 6 ~~~~~~kV~V~vyyESl-CPds~~Fi~~qL~p~~~~~l~~~vdl~lvP~ 53 (225)
++.-..|+.|-.||-+- ||.|++-+.. |...+. ++. ++.+|-.
T Consensus 21 l~~~~gk~vvl~f~~~~~c~~C~~e~~~-l~~~~~-~~~---~~~vi~I 64 (143)
T cd03014 21 LADFAGKVKVISVFPSIDTPVCATQTKR-FNKEAA-KLD---NTVVLTI 64 (143)
T ss_pred HHHhCCCeEEEEEEcCCCCCcCHHHHHH-HHHHHH-hcC---CCEEEEE
Confidence 44445677777778877 7999988533 666665 343 4555533
No 103
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=21.82 E-value=1.3e+02 Score=21.21 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=16.4
Q ss_pred CceEEEEEEEeCChhhHHHH
Q 043330 11 GNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 11 ~kV~V~vyyESlCPds~~Fi 30 (225)
.+.-+-.||-+-||.|+.+.
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~ 36 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMK 36 (104)
T ss_pred CCCEEEEEECCCCHHHHHhC
Confidence 34668889999999999984
No 104
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=21.34 E-value=88 Score=22.10 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.8
Q ss_pred CCceEEEEEEEeCChhhHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNF 29 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~F 29 (225)
..+.-|-.||-+-||.|+++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~ 36 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNL 36 (105)
T ss_pred CCCcEEEEEECCCCHHHHhh
Confidence 34567888999999999988
No 105
>PRK13675 GTP cyclohydrolase; Provisional
Probab=21.24 E-value=1.3e+02 Score=27.53 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=21.5
Q ss_pred CCceEEEEEEEeCChhhHHHHHHhhHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFIVKNLEGVF 38 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi~~qL~p~~ 38 (225)
.-.+.|+|.|+|+||=|+......+...+
T Consensus 144 ~~~l~v~V~~~T~CPCS~~is~~~~~~~~ 172 (308)
T PRK13675 144 RKEIGAEVVGMTACPCAQEMMKERARKKL 172 (308)
T ss_pred EEEEEEEEEEEEcChhhHHHHHHHHHHhh
Confidence 34589999999999998888654444333
No 106
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=21.15 E-value=2e+02 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=19.6
Q ss_pred CCCCceEEEEEEEeCChhhHHHH
Q 043330 8 AKPGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 8 ~~~~kV~V~vyyESlCPds~~Fi 30 (225)
...+++-|-.||-+-||.|+.+.
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~ 37 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFR 37 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHh
Confidence 35678899999999999999873
No 107
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=21.00 E-value=2.1e+02 Score=20.05 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=18.2
Q ss_pred CCCceEEEEEEEeCChhhHHHH
Q 043330 9 KPGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 9 ~~~kV~V~vyyESlCPds~~Fi 30 (225)
+..++-|-.||-+-||.|+.+.
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~ 31 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELL 31 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHH
Confidence 4467888889999999999873
No 108
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=20.74 E-value=3e+02 Score=20.57 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=17.5
Q ss_pred CCceEEEEEEEeCChhhHHHH
Q 043330 10 PGNVNLSVYYETLSPTCSNFI 30 (225)
Q Consensus 10 ~~kV~V~vyyESlCPds~~Fi 30 (225)
..+.-|-.||-+-||.|+.+.
T Consensus 18 ~~~~vvV~f~a~wC~~C~~~~ 38 (114)
T cd02992 18 SPSAWLVEFYASWCGHCRAFA 38 (114)
T ss_pred CCCeEEEEEECCCCHHHHHHh
Confidence 346788889999999999884
Done!