BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043332
(897 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 56/346 (16%)
Query: 147 KKVVERIWEDL--MGDKVTKIGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQ 203
KK+V I + L + + + ++GM G GK+ + E + + E V WV++ +
Sbjct: 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189
Query: 204 PLD---LIKLQN-----EIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE 255
L+KLQN + + +Q LP N +E + R+ ML+ + +LILDD+W
Sbjct: 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDP 248
Query: 256 FRLEEVGIPEPSEENGCKLVITTRSLGVC-RFMDCKEI-GVEL-LSQEEALNLFLDKVRI 312
+ L+ +N C++++TTR V M K + VE L +E+ L +
Sbjct: 249 WVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEIL------ 295
Query: 313 STSQILNLDKEII----NSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRG---- 364
S +N+ KE + +S+++EC G PL + + + +R D + W L +L+
Sbjct: 296 --SLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFK 351
Query: 365 LVRSRNGVNADVLGR-LEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFI 423
+R + + + L + S L++D ++ + ++ +D +P + L W E
Sbjct: 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE--T 408
Query: 424 EEVKDVQAKNDRGHTILNRLVNCCLLESAKDGR--CVKMHDLIRDM 467
EEV+D IL VN LL ++G+ C +HDL D
Sbjct: 409 EEVED----------ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 158/346 (45%), Gaps = 56/346 (16%)
Query: 147 KKVVERIWEDL--MGDKVTKIGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQ 203
KK+V I + L + + + ++GM G GK+ + E + + E V WV++ +
Sbjct: 137 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 196
Query: 204 PLD---LIKLQN-----EIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE 255
L+KLQN + + +Q LP N +E + R+ ML+ + +LILDD+W
Sbjct: 197 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDP 255
Query: 256 FRLEEVGIPEPSEENGCKLVITTRSLGVC-RFMDCKEI-GVEL-LSQEEALNLFLDKVRI 312
+ L+ +N C++++TT V M K + VE L +E+ L +
Sbjct: 256 WVLKAF-------DNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEIL------ 302
Query: 313 STSQILNLDKEII----NSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRG---- 364
S +N+ KE + +S+++EC G PL + + + +R D + W L +L+
Sbjct: 303 --SLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLR--DFPNRWAYYLRQLQNKQFK 358
Query: 365 LVRSRNGVNADVLGR-LEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFI 423
+R + + + L + S L++D ++ + ++ +D +P + L W E
Sbjct: 359 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE--T 415
Query: 424 EEVKDVQAKNDRGHTILNRLVNCCLLESAKDGR--CVKMHDLIRDM 467
EEV+D IL VN LL ++G+ C +HDL D
Sbjct: 416 EEVED----------ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 146/322 (45%), Gaps = 46/322 (14%)
Query: 165 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQN-----EIA 215
+ + GM G GK+ + E + + E V WV+V + L+KLQN +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLV 275
+ +Q LP N +E + R+ ML+ + +LILDD+W + L+ ++ C+++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDSWVLKAF-------DSQCQIL 261
Query: 276 ITTRSLGVCRFMDCKEIGVEL---LSQEEALNLFLDKVRISTSQILNLDKEIINSVVEEC 332
+TTR V + + V + L +E+ L + V + + + E +S+++EC
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADL----PEQAHSIIKEC 317
Query: 333 AGLPLAIVTVASCMRGVDEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRL 387
G PL + + + +R D + W L +L+ +R + + + L + S L
Sbjct: 318 KGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 388 KDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILNRLVNCC 447
++D ++ + ++ +D +P + L W E EEV+D IL VN
Sbjct: 376 RED-IKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVED----------ILQEFVNKS 422
Query: 448 LLESAKDGRCVK--MHDLIRDM 467
LL ++G+ + +HDL D
Sbjct: 423 LLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 147/326 (45%), Gaps = 54/326 (16%)
Query: 165 IGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQN-----EIA 215
+ + GM G GK+ + E + + E V WV+V + L+KLQN +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 215
Query: 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLV 275
+ +Q LP N +E + R+ ML+ + +LILDD+W + L+ ++ C+++
Sbjct: 216 ESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDSWVLKAF-------DSQCQIL 267
Query: 276 ITTRSLGVCRFMDCKEIGVEL---LSQEEALNLFLDKVRISTSQILNLDK----EIINSV 328
+TTR V + + V + L +E+ L + S +N+ K E +S+
Sbjct: 268 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEIL--------SLFVNMKKADLPEQAHSI 319
Query: 329 VEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFS 383
++EC G PL + + + +R D + W L +L+ +R + + + L + S
Sbjct: 320 IKECKGSPLVVSLIGALLR--DFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 377
Query: 384 YHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILNRL 443
L++D ++ + ++ +D +P + L W E EEV+D IL
Sbjct: 378 VEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVED----------ILQEF 424
Query: 444 VNCCLLESAKDGRCVK--MHDLIRDM 467
VN LL ++G+ + +HDL D
Sbjct: 425 VNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
Query: 478 FMAKAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTI 537
++A G +L + +E NL + L N ++ +P+ + L L+L N L ++
Sbjct: 67 YLALGGNKLHDISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL 124
Query: 538 PECFFVHMHGLKVLNLSHTDIEVLPSSVSDXXXXXXXXXXXXXXXXXVPSVAKLLALHYL 597
P+ F + L LNL+H ++ LP V D KL L L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----------------------KLTNLTEL 162
Query: 598 DLEATRIEEVPEGM-EMLENXXXXXXXXXXXKKFPTGILPRLRDL 641
DL +++ +PEG+ + L K P G+ RL L
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 25/170 (14%)
Query: 478 FMAKAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTI 537
++A G +L + +E NL + L N ++ +P+ + L L+L N L ++
Sbjct: 67 YLALGGNKLHDISALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSL 124
Query: 538 PECFFVHMHGLKVLNLSHTDIEVLPSSVSDXXXXXXXXXXXXXXXXXVPSVAKLLALHYL 597
P+ F + L L L H ++ LP V D KL L L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFD----------------------KLTNLTRL 162
Query: 598 DLEATRIEEVPEGM-EMLENXXXXXXXXXXXKKFPTGILPRLRDLYKLKL 646
DL+ +++ +PEG+ + L K P G+ RL L + L
Sbjct: 163 DLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL NN+ E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL NN+ E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL NN+ E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 151 LEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 193
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL NN+ E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL NN+ E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL N++ E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNDLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFF 542
LE++SL N + E+P+ + + L TLLLQ N +L+TIP+ FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF 192
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 502 VSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561
+ L N++K +P+ + L+ L L N L ++P F + L LNLS ++ L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 562 PSSVSDXXXXXXXXXXXXXXXXXVPSVAKLLALHYLDLEATRIEEVPEGM-EMLENXXXX 620
P+ V D KL L L L +++ +P+G+ + L
Sbjct: 92 PNGVFD----------------------KLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
Query: 621 XXXXXXXKKFPTGILPRLRDL 641
K P G+ RL L
Sbjct: 130 RLYQNQLKSVPDGVFDRLTSL 150
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 4/150 (2%)
Query: 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE 559
+++ L N + +PS L L L N L T+P F + L+ L ++ ++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 560 VLPSSVSDXXXXXXXXXXXXXXXXXVPS--VAKLLALHYLDLEATRIEEVPEGM-EMLEN 616
LP V D +P L L YL L ++ +P+G+ + L +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 617 XXXXXXXXXXXKKFPTGILPRLRDLYKLKL 646
K+ P G +L +L LKL
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVV---IWVTVSQ 203
+++ E + L G+K + ++G+ G GKT + + + RL+ + V+ I+V
Sbjct: 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88
Query: 204 PLDLIKLQNEIAAALNQSLPEN--------EDEVRRAGRLSGMLKAKAKFVLILDDM 252
++ + IA A+ +P E V+R RL G+ ++++LD++
Sbjct: 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGI------YIIVLDEI 139
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 523 LSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDXXXXXXXXXXXXXXX 582
L TL L AN L ++P F H+ L L L ++ LPS V D
Sbjct: 85 LGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 583 XXVPSVA--KLLALHYLDLEATRIEEVPEG 610
+P+ A KL L L L +++ VP G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 523 LSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDXXXXXXXXXXXXXXX 582
L TL L AN L ++P F H+ L L L ++ LPS V D
Sbjct: 85 LGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 583 XXVPSVA--KLLALHYLDLEATRIEEVPEG 610
+P+ A KL L L L +++ VP G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 158 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 147 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 158 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 152 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 187
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 185 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 220
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
KIG++G G+GKT ++E+ N + K F+V V
Sbjct: 147 KIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 23/119 (19%)
Query: 523 LSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDXXXXXXXXXXXXXXX 582
L L L +N L +P F + L VL+L + VLPS+V D
Sbjct: 66 LKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD--------------- 109
Query: 583 XXVPSVAKLLALHYLDLEATRIEEVPEGMEMLENXXXXXXXXXXXKKFPTGILPRLRDL 641
+L+ L L + ++ E+P G+E L + K P G RL L
Sbjct: 110 -------RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT +++E+ N + +E +V V
Sbjct: 143 KGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGV 181
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 198 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 236
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 150 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 188
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 300 EEALNLFLDKVRISTSQILNLDKEIINSVVE 330
EEALN+ L+ VR QIL D E I+S VE
Sbjct: 59 EEALNVLLEDVRARPQQILESDAEDIHSWVE 89
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 140 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 178
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 490 PVEQEWKENLERVSLMKNNIK-EIPSYMSPHCDILSTLLLQANGNLWTIPECF------- 541
P+ ++L+ +SL +N EIP ++S CD L+ L L N +P F
Sbjct: 259 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 542 -----------------FVHMHGLKVLNLSHTDIEV-LPSSVSD 567
+ M GLKVL+LS + LP S+++
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 490 PVEQEWKENLERVSLMKNNIK-EIPSYMSPHCDILSTLLLQANGNLWTIPECF------- 541
P+ ++L+ +SL +N EIP ++S CD L+ L L N +P F
Sbjct: 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 542 -----------------FVHMHGLKVLNLSHTDIEV-LPSSVSD 567
+ M GLKVL+LS + LP S+++
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,146,815
Number of Sequences: 62578
Number of extensions: 887273
Number of successful extensions: 2612
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2563
Number of HSP's gapped (non-prelim): 65
length of query: 897
length of database: 14,973,337
effective HSP length: 108
effective length of query: 789
effective length of database: 8,214,913
effective search space: 6481566357
effective search space used: 6481566357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)