Query 043332
Match_columns 897
No_of_seqs 529 out of 4998
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.6E-90 1E-94 807.9 49.2 790 11-881 9-848 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.9E-61 6.3E-66 598.6 54.2 660 139-880 184-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.7E-43 5.9E-48 376.4 18.5 276 147-425 2-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 3.6E-22 7.8E-27 249.8 19.9 361 498-881 70-447 (968)
5 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.8E-29 230.1 -4.2 339 478-879 36-379 (1255)
6 PLN00113 leucine-rich repeat r 99.9 7E-22 1.5E-26 247.2 18.9 371 490-888 157-549 (968)
7 KOG4194 Membrane glycoprotein 99.8 4.6E-22 1E-26 210.0 2.6 289 496-805 77-374 (873)
8 KOG4194 Membrane glycoprotein 99.8 4.2E-21 9.1E-26 202.8 0.1 304 489-806 117-426 (873)
9 PLN03210 Resistant to P. syrin 99.8 2.6E-18 5.7E-23 214.9 22.0 334 496-876 588-944 (1153)
10 KOG0444 Cytoskeletal regulator 99.7 2E-20 4.4E-25 198.6 -6.6 336 487-887 22-363 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 3.5E-20 7.6E-25 187.7 -6.7 191 485-683 79-270 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 4.8E-19 1E-23 179.5 -6.6 345 487-874 150-540 (565)
13 KOG0618 Serine/threonine phosp 99.6 4.6E-17 9.9E-22 182.0 0.6 111 759-875 373-489 (1081)
14 KOG0617 Ras suppressor protein 99.5 3.9E-16 8.4E-21 140.4 -3.4 147 497-647 33-181 (264)
15 KOG0617 Ras suppressor protein 99.5 3.2E-16 6.9E-21 140.9 -4.0 159 519-684 31-192 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 5.1E-14 1.1E-18 163.4 13.0 253 500-847 204-456 (788)
17 KOG0618 Serine/threonine phosp 99.5 5E-16 1.1E-20 173.8 -4.9 88 487-577 58-145 (1081)
18 PRK15387 E3 ubiquitin-protein 99.5 4E-13 8.6E-18 156.1 15.1 245 484-806 211-455 (788)
19 KOG4658 Apoptotic ATPase [Sign 99.4 7.4E-14 1.6E-18 165.8 6.9 105 498-603 546-653 (889)
20 PRK15370 E3 ubiquitin-protein 99.4 7.1E-13 1.5E-17 155.1 11.8 132 499-647 180-312 (754)
21 PRK04841 transcriptional regul 99.4 2.2E-11 4.8E-16 152.1 24.8 289 139-472 14-332 (903)
22 PRK15370 E3 ubiquitin-protein 99.4 1.5E-12 3.2E-17 152.5 11.6 171 485-679 189-360 (754)
23 KOG4237 Extracellular matrix p 99.3 5.7E-13 1.2E-17 135.9 1.3 144 479-626 51-199 (498)
24 KOG4237 Extracellular matrix p 99.3 1.1E-13 2.4E-18 141.0 -4.4 283 504-805 53-355 (498)
25 COG2909 MalT ATP-dependent tra 99.2 1.2E-09 2.5E-14 123.4 24.3 293 138-474 18-340 (894)
26 TIGR03015 pepcterm_ATPase puta 99.1 7.6E-09 1.6E-13 109.3 23.4 181 160-346 41-242 (269)
27 PF01637 Arch_ATPase: Archaeal 99.1 3.2E-10 6.9E-15 117.2 10.6 193 141-341 1-233 (234)
28 PRK00411 cdc6 cell division co 99.1 3.4E-08 7.4E-13 110.5 26.8 292 139-452 30-358 (394)
29 TIGR02928 orc1/cdc6 family rep 99.1 7.8E-08 1.7E-12 106.5 27.7 295 139-452 15-350 (365)
30 PF05729 NACHT: NACHT domain 99.0 2.3E-09 4.9E-14 104.2 11.6 142 163-310 1-163 (166)
31 PRK00080 ruvB Holliday junctio 99.0 9.5E-09 2.1E-13 111.2 16.0 274 139-454 25-312 (328)
32 cd00116 LRR_RI Leucine-rich re 98.9 2.2E-10 4.9E-15 124.5 1.9 109 518-628 20-150 (319)
33 TIGR00635 ruvB Holliday juncti 98.9 8.7E-08 1.9E-12 103.1 20.5 273 139-454 4-291 (305)
34 KOG0532 Leucine-rich repeat (L 98.9 2.3E-10 4.9E-15 122.5 -1.0 165 487-660 88-253 (722)
35 KOG0532 Leucine-rich repeat (L 98.9 7.2E-11 1.6E-15 126.2 -5.1 193 482-684 58-253 (722)
36 cd00116 LRR_RI Leucine-rich re 98.9 1.1E-09 2.3E-14 119.2 3.7 86 543-628 78-178 (319)
37 PF14580 LRR_9: Leucine-rich r 98.8 6.6E-09 1.4E-13 99.2 5.2 105 520-628 18-126 (175)
38 PF14580 LRR_9: Leucine-rich r 98.8 7.2E-09 1.6E-13 99.0 4.8 120 498-622 20-147 (175)
39 KOG1259 Nischarin, modulator o 98.7 1.3E-09 2.8E-14 107.5 -0.7 131 497-632 284-416 (490)
40 PRK06893 DNA replication initi 98.7 1.4E-07 3E-12 96.2 12.7 173 140-344 17-205 (229)
41 COG2256 MGS1 ATPase related to 98.6 2.9E-06 6.4E-11 88.5 17.7 220 140-388 25-264 (436)
42 PTZ00112 origin recognition co 98.6 7.8E-06 1.7E-10 93.8 22.5 204 139-346 755-986 (1164)
43 PRK13342 recombination factor 98.6 3.8E-07 8.2E-12 101.9 12.1 174 139-343 12-197 (413)
44 KOG1259 Nischarin, modulator o 98.5 7.3E-09 1.6E-13 102.3 -2.1 121 522-647 285-407 (490)
45 TIGR03420 DnaA_homol_Hda DnaA 98.5 7.9E-07 1.7E-11 91.1 11.5 173 140-344 16-203 (226)
46 COG3899 Predicted ATPase [Gene 98.5 4.4E-06 9.6E-11 100.6 19.3 309 140-473 1-387 (849)
47 KOG3207 Beta-tubulin folding c 98.4 1.7E-08 3.7E-13 105.2 -2.4 138 493-631 117-262 (505)
48 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.6E-12 105.1 4.9 171 498-677 117-289 (394)
49 KOG3207 Beta-tubulin folding c 98.4 3.8E-08 8.3E-13 102.7 -0.5 180 497-677 146-338 (505)
50 PRK07003 DNA polymerase III su 98.4 1.5E-05 3.2E-10 91.3 20.0 176 139-341 16-220 (830)
51 KOG4341 F-box protein containi 98.4 1.6E-08 3.4E-13 105.0 -3.4 285 498-811 139-441 (483)
52 PF13401 AAA_22: AAA domain; P 98.4 7.4E-07 1.6E-11 82.5 8.1 117 162-280 4-125 (131)
53 COG4886 Leucine-rich repeat (L 98.4 1.6E-07 3.4E-12 105.3 4.2 145 498-647 141-285 (394)
54 PF13173 AAA_14: AAA domain 98.4 5.7E-07 1.2E-11 82.6 6.6 118 163-302 3-127 (128)
55 PRK05564 DNA polymerase III su 98.4 1.1E-05 2.4E-10 86.8 17.1 175 139-340 4-188 (313)
56 PRK14961 DNA polymerase III su 98.4 1.1E-05 2.3E-10 88.5 17.0 189 139-340 16-218 (363)
57 cd01128 rho_factor Transcripti 98.4 7.7E-07 1.7E-11 90.8 7.4 92 161-254 15-114 (249)
58 PRK12402 replication factor C 98.4 6E-06 1.3E-10 90.4 15.0 196 139-341 15-225 (337)
59 KOG4341 F-box protein containi 98.4 2.4E-08 5.1E-13 103.7 -3.8 287 547-877 139-441 (483)
60 cd00009 AAA The AAA+ (ATPases 98.3 3.7E-06 8E-11 79.6 10.9 120 147-282 4-131 (151)
61 PRK14949 DNA polymerase III su 98.3 8E-06 1.7E-10 95.3 15.4 181 139-342 16-220 (944)
62 PRK12323 DNA polymerase III su 98.3 9.3E-06 2E-10 91.7 14.9 194 139-342 16-225 (700)
63 PLN03025 replication factor C 98.3 1.2E-05 2.5E-10 86.8 15.3 180 139-340 13-198 (319)
64 PRK04195 replication factor C 98.3 3.2E-05 6.8E-10 88.3 19.3 179 139-346 14-206 (482)
65 PRK09376 rho transcription ter 98.3 2.5E-06 5.5E-11 90.4 9.1 91 162-254 169-267 (416)
66 PF13855 LRR_8: Leucine rich r 98.3 7.6E-07 1.6E-11 69.6 3.8 57 522-579 2-59 (61)
67 PRK14963 DNA polymerase III su 98.3 2E-05 4.4E-10 89.1 16.7 191 139-339 14-214 (504)
68 PRK14960 DNA polymerase III su 98.3 1.3E-05 2.9E-10 90.7 14.7 190 139-341 15-218 (702)
69 COG1474 CDC6 Cdc6-related prot 98.2 7.5E-05 1.6E-09 80.9 19.8 199 140-343 18-239 (366)
70 PRK00440 rfc replication facto 98.2 3.1E-05 6.8E-10 84.0 16.8 179 139-341 17-202 (319)
71 PF13855 LRR_8: Leucine rich r 98.2 9.9E-07 2.1E-11 69.0 3.4 59 498-557 2-60 (61)
72 PRK06645 DNA polymerase III su 98.2 2.7E-05 5.9E-10 87.6 16.1 174 139-339 21-226 (507)
73 PRK07940 DNA polymerase III su 98.2 3.4E-05 7.3E-10 84.4 16.5 171 139-342 5-213 (394)
74 PRK08084 DNA replication initi 98.2 1.2E-05 2.7E-10 82.2 12.3 171 141-344 25-211 (235)
75 PRK14956 DNA polymerase III su 98.2 9.2E-06 2E-10 89.4 11.7 188 139-339 18-219 (484)
76 TIGR02903 spore_lon_C ATP-depe 98.2 6.9E-05 1.5E-09 87.4 19.5 170 139-312 154-368 (615)
77 PTZ00202 tuzin; Provisional 98.2 6.8E-05 1.5E-09 80.0 17.4 162 134-309 257-433 (550)
78 PLN03150 hypothetical protein; 98.2 3.4E-06 7.4E-11 99.1 8.4 103 523-626 420-526 (623)
79 PRK14962 DNA polymerase III su 98.2 3.7E-05 8.1E-10 86.2 16.2 184 139-345 14-222 (472)
80 PRK14957 DNA polymerase III su 98.2 4.5E-05 9.7E-10 86.5 16.4 181 139-342 16-221 (546)
81 KOG2028 ATPase related to the 98.1 4.7E-05 1E-09 78.0 14.4 161 153-337 153-331 (554)
82 PF05496 RuvB_N: Holliday junc 98.1 3.5E-05 7.7E-10 75.3 13.0 172 139-345 24-224 (233)
83 PRK09087 hypothetical protein; 98.1 2.2E-05 4.7E-10 79.5 12.0 141 161-342 43-195 (226)
84 PLN03150 hypothetical protein; 98.1 4E-06 8.6E-11 98.5 7.5 99 548-647 420-523 (623)
85 PRK07471 DNA polymerase III su 98.1 9.1E-05 2E-09 80.4 17.2 195 139-342 19-238 (365)
86 PRK14964 DNA polymerase III su 98.1 5.7E-05 1.2E-09 84.3 15.8 178 139-339 13-214 (491)
87 PRK07994 DNA polymerase III su 98.1 4.1E-05 8.9E-10 88.1 15.0 191 139-342 16-220 (647)
88 PRK08691 DNA polymerase III su 98.1 3.8E-05 8.3E-10 87.9 14.5 176 139-341 16-219 (709)
89 PRK08727 hypothetical protein; 98.1 3.1E-05 6.6E-10 79.2 12.6 167 140-339 20-201 (233)
90 PF13191 AAA_16: AAA ATPase do 98.1 1.4E-05 3E-10 79.0 9.6 47 140-188 1-50 (185)
91 TIGR00678 holB DNA polymerase 98.1 7.6E-05 1.7E-09 73.8 14.7 159 152-338 3-187 (188)
92 TIGR02397 dnaX_nterm DNA polym 98.1 0.00011 2.3E-09 81.1 17.3 180 139-342 14-218 (355)
93 TIGR00767 rho transcription te 98.1 1E-05 2.2E-10 86.4 8.5 92 161-254 167-266 (415)
94 PRK14958 DNA polymerase III su 98.1 6.2E-05 1.3E-09 85.5 14.8 180 139-341 16-219 (509)
95 PRK13341 recombination factor 98.0 4E-05 8.7E-10 90.2 13.7 171 139-339 28-214 (725)
96 KOG0531 Protein phosphatase 1, 98.0 6.4E-07 1.4E-11 100.5 -1.5 102 543-647 92-194 (414)
97 PRK14951 DNA polymerase III su 98.0 0.00011 2.5E-09 84.4 16.4 194 139-341 16-224 (618)
98 PRK14969 DNA polymerase III su 98.0 9.6E-05 2.1E-09 84.5 15.9 174 139-339 16-217 (527)
99 PRK14955 DNA polymerase III su 98.0 8.1E-05 1.8E-09 82.6 14.9 197 139-341 16-227 (397)
100 PF00308 Bac_DnaA: Bacterial d 98.0 8.6E-05 1.9E-09 74.9 13.8 160 162-342 34-208 (219)
101 COG3903 Predicted ATPase [Gene 98.0 1.3E-05 2.8E-10 84.5 7.6 292 162-473 14-315 (414)
102 PRK09112 DNA polymerase III su 98.0 0.00018 3.8E-09 77.8 16.2 195 139-343 23-241 (351)
103 PRK14087 dnaA chromosomal repl 98.0 0.00011 2.5E-09 82.3 15.2 186 141-343 118-320 (450)
104 PRK14970 DNA polymerase III su 98.0 0.00015 3.3E-09 80.1 16.0 178 139-339 17-206 (367)
105 PRK05896 DNA polymerase III su 97.9 0.00014 2.9E-09 82.7 14.8 191 139-342 16-221 (605)
106 PRK05642 DNA replication initi 97.9 0.00016 3.5E-09 73.9 14.2 151 162-344 45-210 (234)
107 PF14516 AAA_35: AAA-like doma 97.9 0.0033 7.1E-08 67.9 24.9 198 138-348 10-245 (331)
108 KOG2120 SCF ubiquitin ligase, 97.9 5.5E-07 1.2E-11 89.4 -4.2 56 570-626 186-245 (419)
109 PRK08903 DnaA regulatory inact 97.9 0.00013 2.7E-09 74.8 12.8 164 147-346 26-203 (227)
110 TIGR01242 26Sp45 26S proteasom 97.9 3.2E-05 6.8E-10 85.1 8.8 170 139-336 122-328 (364)
111 PF05621 TniB: Bacterial TniB 97.9 0.00026 5.5E-09 72.8 14.2 197 140-340 35-259 (302)
112 KOG1859 Leucine-rich repeat pr 97.9 4.1E-07 8.9E-12 100.5 -6.5 124 548-676 166-290 (1096)
113 PRK06305 DNA polymerase III su 97.9 0.00033 7.2E-09 78.6 16.0 177 138-338 16-218 (451)
114 PRK15386 type III secretion pr 97.8 4.8E-05 1E-09 81.9 8.6 77 497-586 52-131 (426)
115 PRK14971 DNA polymerase III su 97.8 0.00036 7.9E-09 81.1 16.5 177 139-339 17-219 (614)
116 PRK09111 DNA polymerase III su 97.8 0.0003 6.5E-09 81.1 15.6 195 139-342 24-233 (598)
117 PRK07133 DNA polymerase III su 97.8 0.00044 9.5E-09 80.3 16.5 183 139-339 18-216 (725)
118 PRK14959 DNA polymerase III su 97.8 0.00026 5.7E-09 80.8 14.4 195 139-346 16-225 (624)
119 PRK07764 DNA polymerase III su 97.8 0.00043 9.4E-09 82.7 16.7 173 139-339 15-218 (824)
120 PRK08451 DNA polymerase III su 97.8 0.00057 1.2E-08 77.2 16.5 180 139-342 14-218 (535)
121 KOG2120 SCF ubiquitin ligase, 97.8 1.1E-06 2.4E-11 87.3 -4.6 79 548-626 187-271 (419)
122 PRK14952 DNA polymerase III su 97.8 0.00053 1.2E-08 78.7 16.1 193 139-344 13-222 (584)
123 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 56.2 3.0 40 546-586 1-40 (44)
124 PRK14950 DNA polymerase III su 97.8 0.00023 4.9E-09 83.0 13.1 192 139-342 16-221 (585)
125 KOG0989 Replication factor C, 97.7 0.00026 5.6E-09 71.6 11.1 179 139-338 36-226 (346)
126 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.3E-10 93.2 2.8 130 497-628 122-263 (699)
127 TIGR02880 cbbX_cfxQ probable R 97.7 0.00026 5.7E-09 74.5 11.8 131 164-312 60-210 (284)
128 TIGR00362 DnaA chromosomal rep 97.7 0.00056 1.2E-08 76.6 15.1 180 141-341 113-309 (405)
129 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.8E-10 55.6 2.9 40 592-631 1-40 (44)
130 PRK14088 dnaA chromosomal repl 97.7 0.00067 1.5E-08 76.1 15.4 181 141-341 108-304 (440)
131 PRK14953 DNA polymerase III su 97.7 0.00094 2E-08 75.5 16.7 177 139-342 16-220 (486)
132 PRK11331 5-methylcytosine-spec 97.7 0.00018 4E-09 78.4 10.0 68 140-212 176-243 (459)
133 PRK14954 DNA polymerase III su 97.7 0.00061 1.3E-08 78.8 14.7 193 139-337 16-223 (620)
134 TIGR02881 spore_V_K stage V sp 97.7 0.0004 8.8E-09 72.5 12.2 132 162-312 42-193 (261)
135 CHL00181 cbbX CbbX; Provisiona 97.7 0.0004 8.7E-09 73.1 12.1 130 164-312 61-211 (287)
136 KOG1859 Leucine-rich repeat pr 97.7 3.6E-06 7.7E-11 93.4 -3.5 109 569-684 164-273 (1096)
137 PRK06647 DNA polymerase III su 97.6 0.0011 2.4E-08 76.2 16.2 190 139-341 16-219 (563)
138 TIGR02639 ClpA ATP-dependent C 97.6 0.0005 1.1E-08 82.6 13.8 152 140-310 183-358 (731)
139 KOG2543 Origin recognition com 97.6 0.0023 4.9E-08 66.9 16.1 164 138-309 5-192 (438)
140 PHA02544 44 clamp loader, smal 97.6 0.00062 1.3E-08 73.7 12.5 144 139-308 21-171 (316)
141 PRK06620 hypothetical protein; 97.6 0.00053 1.1E-08 68.8 11.0 157 140-340 18-187 (214)
142 KOG1909 Ran GTPase-activating 97.6 1.3E-05 2.8E-10 82.0 -0.5 40 590-629 90-134 (382)
143 PRK14948 DNA polymerase III su 97.6 0.0018 3.9E-08 75.4 16.8 193 139-342 16-222 (620)
144 PRK00149 dnaA chromosomal repl 97.6 0.001 2.2E-08 75.5 14.5 180 141-341 125-321 (450)
145 COG2255 RuvB Holliday junction 97.6 0.012 2.7E-07 59.1 20.0 166 139-339 26-220 (332)
146 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00091 2E-08 81.0 14.7 178 140-335 188-389 (852)
147 PRK14965 DNA polymerase III su 97.6 0.00099 2.1E-08 77.3 14.4 191 139-342 16-221 (576)
148 PRK14086 dnaA chromosomal repl 97.5 0.0052 1.1E-07 70.1 19.5 158 163-341 315-487 (617)
149 KOG1909 Ran GTPase-activating 97.5 1.3E-05 2.8E-10 82.0 -1.1 84 497-580 30-131 (382)
150 PRK15386 type III secretion pr 97.5 0.00018 4E-09 77.5 7.5 82 519-612 50-135 (426)
151 KOG0531 Protein phosphatase 1, 97.5 1.4E-05 3E-10 89.8 -1.3 103 497-605 95-199 (414)
152 PRK03992 proteasome-activating 97.5 0.0006 1.3E-08 75.3 11.4 170 139-336 131-337 (389)
153 KOG4579 Leucine-rich repeat (L 97.5 8.7E-06 1.9E-10 71.7 -2.5 87 522-610 54-141 (177)
154 PRK07399 DNA polymerase III su 97.5 0.0022 4.7E-08 68.4 14.9 193 140-341 5-220 (314)
155 KOG2227 Pre-initiation complex 97.5 0.0045 9.8E-08 66.4 16.9 206 137-346 148-376 (529)
156 PRK05563 DNA polymerase III su 97.5 0.0025 5.4E-08 73.7 16.5 189 139-340 16-218 (559)
157 TIGR00602 rad24 checkpoint pro 97.5 0.00071 1.5E-08 78.1 11.8 45 140-186 85-134 (637)
158 KOG4579 Leucine-rich repeat (L 97.4 2.1E-05 4.6E-10 69.4 -1.0 90 543-633 50-141 (177)
159 PRK08118 topology modulation p 97.4 8.5E-05 1.8E-09 71.5 2.9 36 163-198 2-37 (167)
160 PRK11034 clpA ATP-dependent Cl 97.4 0.0012 2.6E-08 78.4 12.7 152 140-310 187-362 (758)
161 PRK05707 DNA polymerase III su 97.4 0.0048 1E-07 66.1 16.2 166 162-342 22-203 (328)
162 PTZ00361 26 proteosome regulat 97.4 0.0011 2.3E-08 73.5 11.2 128 162-311 217-368 (438)
163 CHL00095 clpC Clp protease ATP 97.4 0.00073 1.6E-08 82.3 10.8 153 140-309 180-353 (821)
164 smart00382 AAA ATPases associa 97.4 0.00055 1.2E-08 64.0 7.7 89 163-256 3-91 (148)
165 COG0466 Lon ATP-dependent Lon 97.3 0.012 2.5E-07 66.9 18.4 63 140-210 324-392 (782)
166 COG1373 Predicted ATPase (AAA+ 97.3 0.0026 5.6E-08 70.3 12.9 132 148-306 24-163 (398)
167 PRK12422 chromosomal replicati 97.3 0.0027 5.8E-08 71.1 13.1 152 162-336 141-307 (445)
168 PTZ00454 26S protease regulato 97.2 0.0027 5.9E-08 69.9 12.3 149 162-336 179-351 (398)
169 KOG3665 ZYG-1-like serine/thre 97.2 0.0002 4.3E-09 84.0 3.7 126 521-647 122-258 (699)
170 PF05673 DUF815: Protein of un 97.2 0.016 3.4E-07 58.0 16.1 50 136-187 24-77 (249)
171 PF00004 AAA: ATPase family as 97.2 0.00079 1.7E-08 62.1 6.8 68 165-254 1-69 (132)
172 COG3267 ExeA Type II secretory 97.2 0.016 3.4E-07 57.7 15.4 181 159-344 48-247 (269)
173 KOG1644 U2-associated snRNP A' 97.2 0.00058 1.3E-08 64.8 5.1 13 635-647 136-148 (233)
174 PRK08769 DNA polymerase III su 97.1 0.016 3.6E-07 61.5 16.4 172 147-342 10-208 (319)
175 PRK08116 hypothetical protein; 97.1 0.0011 2.4E-08 69.0 7.5 102 163-281 115-221 (268)
176 PRK10865 protein disaggregatio 97.1 0.0037 8E-08 76.1 12.9 152 140-310 179-354 (857)
177 PRK06871 DNA polymerase III su 97.1 0.021 4.5E-07 60.8 16.8 175 149-339 10-200 (325)
178 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0059 1.3E-07 74.7 14.5 152 140-309 174-348 (852)
179 KOG1644 U2-associated snRNP A' 97.1 0.0013 2.9E-08 62.5 6.8 79 498-579 43-123 (233)
180 KOG2982 Uncharacterized conser 97.1 0.00022 4.9E-09 71.3 1.8 101 547-647 46-154 (418)
181 CHL00176 ftsH cell division pr 97.1 0.0066 1.4E-07 70.9 13.9 171 139-335 183-387 (638)
182 TIGR03689 pup_AAA proteasome A 97.1 0.0037 7.9E-08 70.4 11.2 157 140-312 183-380 (512)
183 PRK12608 transcription termina 97.1 0.0042 9.1E-08 66.4 11.1 103 150-254 120-231 (380)
184 PF04665 Pox_A32: Poxvirus A32 97.0 0.0023 4.9E-08 64.4 7.9 36 164-202 15-50 (241)
185 TIGR01241 FtsH_fam ATP-depende 97.0 0.014 3.1E-07 67.0 15.6 171 140-336 56-260 (495)
186 PRK10787 DNA-binding ATP-depen 97.0 0.015 3.3E-07 69.8 16.2 46 139-186 322-373 (784)
187 KOG0741 AAA+-type ATPase [Post 97.0 0.013 2.8E-07 63.7 13.7 146 162-332 538-704 (744)
188 PRK08058 DNA polymerase III su 97.0 0.013 2.9E-07 63.2 14.2 145 140-308 6-180 (329)
189 PRK07261 topology modulation p 97.0 0.0014 3.1E-08 63.3 6.1 35 164-198 2-36 (171)
190 PRK07993 DNA polymerase III su 97.0 0.026 5.7E-07 60.7 16.2 176 148-339 9-201 (334)
191 TIGR00763 lon ATP-dependent pr 96.9 0.017 3.6E-07 70.1 15.6 45 140-186 321-371 (775)
192 KOG2004 Mitochondrial ATP-depe 96.8 0.015 3.3E-07 65.6 13.2 65 138-210 410-480 (906)
193 PRK08181 transposase; Validate 96.8 0.018 3.8E-07 59.8 13.1 80 153-254 99-178 (269)
194 COG0593 DnaA ATPase involved i 96.8 0.033 7.2E-07 60.5 15.3 134 161-314 112-261 (408)
195 KOG0991 Replication factor C, 96.8 0.0039 8.5E-08 60.4 7.3 98 140-255 28-125 (333)
196 PF13306 LRR_5: Leucine rich r 96.8 0.0031 6.6E-08 57.9 6.6 122 512-641 3-128 (129)
197 TIGR02237 recomb_radB DNA repa 96.8 0.007 1.5E-07 61.0 9.7 47 162-212 12-58 (209)
198 PRK12377 putative replication 96.8 0.0014 3E-08 67.0 4.3 74 162-254 101-174 (248)
199 PF13177 DNA_pol3_delta2: DNA 96.7 0.01 2.3E-07 56.7 9.9 40 147-186 3-43 (162)
200 cd01120 RecA-like_NTPases RecA 96.7 0.0063 1.4E-07 58.4 8.5 40 164-206 1-40 (165)
201 PRK10536 hypothetical protein; 96.7 0.0023 5E-08 64.6 5.2 55 140-199 56-110 (262)
202 PRK06090 DNA polymerase III su 96.7 0.053 1.1E-06 57.6 15.6 175 148-342 10-201 (319)
203 PF13207 AAA_17: AAA domain; P 96.7 0.0016 3.5E-08 59.0 3.6 23 164-186 1-23 (121)
204 PF00448 SRP54: SRP54-type pro 96.6 0.01 2.2E-07 58.5 9.5 88 162-252 1-92 (196)
205 KOG2982 Uncharacterized conser 96.6 0.0012 2.7E-08 66.2 2.6 83 544-626 69-157 (418)
206 KOG0743 AAA+-type ATPase [Post 96.6 0.36 7.7E-06 52.5 20.9 167 147-349 211-417 (457)
207 PF02562 PhoH: PhoH-like prote 96.5 0.0027 5.8E-08 62.4 4.5 122 151-283 10-158 (205)
208 COG1222 RPT1 ATP-dependent 26S 96.5 0.037 8E-07 57.7 12.8 174 147-346 157-371 (406)
209 PRK06921 hypothetical protein; 96.5 0.0055 1.2E-07 63.8 7.0 39 161-201 116-154 (266)
210 TIGR02640 gas_vesic_GvpN gas v 96.5 0.069 1.5E-06 55.7 15.2 57 147-211 8-64 (262)
211 KOG2739 Leucine-rich acidic nu 96.5 0.0009 1.9E-08 66.5 0.9 12 568-579 64-75 (260)
212 COG1223 Predicted ATPase (AAA+ 96.5 0.023 5E-07 56.2 10.2 150 140-311 122-298 (368)
213 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.017 3.7E-07 59.4 10.0 92 162-254 19-126 (235)
214 PF10443 RNA12: RNA12 protein; 96.4 0.19 4.2E-06 54.5 17.7 195 147-352 2-288 (431)
215 KOG0734 AAA+-type ATPase conta 96.4 0.0089 1.9E-07 65.0 7.6 93 140-254 305-407 (752)
216 PRK10865 protein disaggregatio 96.4 0.18 3.9E-06 61.7 19.8 46 139-186 568-622 (857)
217 KOG0733 Nuclear AAA ATPase (VC 96.4 0.035 7.6E-07 61.7 12.0 71 162-254 223-293 (802)
218 PRK09361 radB DNA repair and r 96.4 0.018 3.8E-07 58.8 9.5 45 162-210 23-67 (225)
219 cd01393 recA_like RecA is a b 96.4 0.019 4.1E-07 58.6 9.8 49 162-211 19-71 (226)
220 PRK06964 DNA polymerase III su 96.3 0.16 3.5E-06 54.6 16.8 102 230-342 115-225 (342)
221 CHL00195 ycf46 Ycf46; Provisio 96.3 0.02 4.3E-07 64.7 10.2 151 162-336 259-429 (489)
222 KOG0731 AAA+-type ATPase conta 96.3 0.023 5E-07 65.9 10.8 174 140-338 312-520 (774)
223 COG2812 DnaX DNA polymerase II 96.3 0.029 6.3E-07 62.9 11.3 186 139-337 16-215 (515)
224 PRK06526 transposase; Provisio 96.3 0.0036 7.9E-08 64.5 4.0 25 162-186 98-122 (254)
225 PRK06835 DNA replication prote 96.2 0.0077 1.7E-07 64.4 6.3 36 163-201 184-219 (329)
226 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0067 1.5E-07 64.6 5.8 46 140-187 52-103 (361)
227 PRK04132 replication factor C 96.2 0.071 1.5E-06 63.8 14.7 152 170-341 574-730 (846)
228 KOG2739 Leucine-rich acidic nu 96.2 0.003 6.6E-08 62.8 2.8 83 542-625 61-153 (260)
229 KOG0730 AAA+-type ATPase [Post 96.2 0.11 2.3E-06 58.7 15.0 26 161-186 467-492 (693)
230 cd00544 CobU Adenosylcobinamid 96.2 0.0062 1.3E-07 58.4 4.8 45 165-216 2-46 (169)
231 TIGR02238 recomb_DMC1 meiotic 96.2 0.026 5.5E-07 60.1 9.7 58 162-220 96-156 (313)
232 COG0542 clpA ATP-binding subun 96.2 0.1 2.2E-06 61.3 15.1 59 140-203 492-559 (786)
233 COG1875 NYN ribonuclease and A 96.2 0.0099 2.1E-07 61.9 6.2 49 149-197 232-280 (436)
234 TIGR02012 tigrfam_recA protein 96.2 0.015 3.3E-07 61.5 7.8 85 162-254 55-144 (321)
235 KOG1969 DNA replication checkp 96.1 0.013 2.9E-07 66.3 7.3 74 162-255 326-399 (877)
236 cd01133 F1-ATPase_beta F1 ATP 96.1 0.04 8.6E-07 56.8 10.2 90 162-254 69-174 (274)
237 KOG1947 Leucine rich repeat pr 96.1 0.0011 2.3E-08 76.7 -1.3 62 614-676 242-306 (482)
238 PRK04296 thymidine kinase; Pro 96.1 0.0066 1.4E-07 59.9 4.4 112 163-283 3-118 (190)
239 TIGR01243 CDC48 AAA family ATP 96.0 0.051 1.1E-06 65.7 12.5 170 140-337 179-382 (733)
240 COG1484 DnaC DNA replication p 96.0 0.03 6.6E-07 57.7 9.1 83 151-254 96-178 (254)
241 cd00983 recA RecA is a bacter 96.0 0.014 3.1E-07 61.8 6.6 85 162-254 55-144 (325)
242 TIGR03345 VI_ClpV1 type VI sec 96.0 0.013 2.9E-07 71.1 7.2 46 139-186 566-620 (852)
243 PRK06696 uridine kinase; Valid 95.9 0.012 2.6E-07 59.8 5.8 40 147-186 4-46 (223)
244 PRK09354 recA recombinase A; P 95.9 0.02 4.3E-07 61.2 7.4 85 162-254 60-149 (349)
245 PRK05541 adenylylsulfate kinas 95.9 0.02 4.4E-07 55.8 7.1 36 161-199 6-41 (176)
246 TIGR02639 ClpA ATP-dependent C 95.9 0.026 5.6E-07 68.1 9.2 101 140-255 455-565 (731)
247 TIGR03346 chaperone_ClpB ATP-d 95.9 0.018 4E-07 70.4 8.1 45 140-186 566-619 (852)
248 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.026 5.7E-07 53.1 7.1 116 163-282 3-139 (159)
249 TIGR01243 CDC48 AAA family ATP 95.8 0.055 1.2E-06 65.5 11.7 149 162-336 487-657 (733)
250 COG0470 HolB ATPase involved i 95.8 0.046 9.9E-07 59.4 10.2 137 141-296 3-167 (325)
251 PRK06547 hypothetical protein; 95.8 0.013 2.7E-07 56.6 5.0 34 153-186 6-39 (172)
252 CHL00095 clpC Clp protease ATP 95.8 0.028 6.2E-07 68.6 9.0 46 139-186 509-563 (821)
253 PF08423 Rad51: Rad51; InterP 95.8 0.086 1.9E-06 54.6 11.2 92 162-254 38-144 (256)
254 cd01394 radB RadB. The archaea 95.7 0.049 1.1E-06 55.2 9.3 42 162-206 19-60 (218)
255 PRK09183 transposase/IS protei 95.7 0.024 5.1E-07 58.9 7.0 25 162-186 102-126 (259)
256 PRK08699 DNA polymerase III su 95.7 0.18 3.9E-06 54.1 13.8 25 162-186 21-45 (325)
257 PRK07952 DNA replication prote 95.7 0.064 1.4E-06 54.7 9.9 89 149-255 84-174 (244)
258 PF01695 IstB_IS21: IstB-like 95.7 0.024 5.3E-07 55.0 6.6 73 162-254 47-119 (178)
259 KOG2123 Uncharacterized conser 95.7 0.00051 1.1E-08 68.2 -5.1 80 545-626 18-99 (388)
260 PLN03187 meiotic recombination 95.7 0.071 1.5E-06 57.3 10.6 59 162-221 126-187 (344)
261 KOG0736 Peroxisome assembly fa 95.7 0.1 2.2E-06 59.8 12.1 94 137-254 670-775 (953)
262 KOG0735 AAA+-type ATPase [Post 95.7 0.022 4.8E-07 64.3 6.8 72 162-253 431-504 (952)
263 PRK14722 flhF flagellar biosyn 95.7 0.044 9.5E-07 59.3 8.9 88 162-253 137-225 (374)
264 PLN03186 DNA repair protein RA 95.6 0.056 1.2E-06 58.1 9.5 58 162-220 123-183 (342)
265 TIGR03499 FlhF flagellar biosy 95.6 0.062 1.3E-06 56.6 9.7 87 162-252 194-281 (282)
266 PHA00729 NTP-binding motif con 95.6 0.017 3.6E-07 57.6 5.0 35 152-186 7-41 (226)
267 KOG2035 Replication factor C, 95.6 0.39 8.5E-06 48.4 14.3 210 141-368 15-264 (351)
268 COG0468 RecA RecA/RadA recombi 95.6 0.075 1.6E-06 55.0 9.8 88 162-254 60-152 (279)
269 TIGR02236 recomb_radA DNA repa 95.6 0.087 1.9E-06 56.6 10.9 57 162-219 95-154 (310)
270 PF01583 APS_kinase: Adenylyls 95.6 0.011 2.4E-07 55.3 3.4 36 162-200 2-37 (156)
271 PF07693 KAP_NTPase: KAP famil 95.6 0.32 6.9E-06 52.8 15.5 39 149-187 4-45 (325)
272 PTZ00035 Rad51 protein; Provis 95.6 0.09 1.9E-06 56.7 10.8 58 162-220 118-178 (337)
273 KOG2228 Origin recognition com 95.6 0.073 1.6E-06 55.1 9.4 167 140-311 25-220 (408)
274 COG1618 Predicted nucleotide k 95.5 0.019 4.1E-07 52.8 4.7 25 163-187 6-30 (179)
275 TIGR02239 recomb_RAD51 DNA rep 95.5 0.057 1.2E-06 57.7 9.2 57 162-219 96-155 (316)
276 cd03115 SRP The signal recogni 95.5 0.059 1.3E-06 52.3 8.7 24 164-187 2-25 (173)
277 PRK11889 flhF flagellar biosyn 95.5 0.058 1.3E-06 58.1 9.0 27 161-187 240-266 (436)
278 TIGR02858 spore_III_AA stage I 95.5 0.051 1.1E-06 56.4 8.5 115 159-284 108-232 (270)
279 cd03214 ABC_Iron-Siderophores_ 95.5 0.061 1.3E-06 52.6 8.7 117 162-284 25-161 (180)
280 PF03215 Rad17: Rad17 cell cyc 95.5 0.065 1.4E-06 61.0 9.9 49 147-200 25-78 (519)
281 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.087 1.9E-06 54.1 10.0 47 162-213 21-67 (237)
282 PRK11034 clpA ATP-dependent Cl 95.4 0.032 7E-07 66.5 7.6 45 140-186 459-512 (758)
283 COG5238 RNA1 Ran GTPase-activa 95.4 0.0023 5E-08 63.5 -1.6 45 587-631 87-136 (388)
284 PRK04301 radA DNA repair and r 95.4 0.11 2.3E-06 56.1 10.9 57 162-219 102-161 (317)
285 PRK15455 PrkA family serine pr 95.4 0.018 3.8E-07 64.7 5.0 45 140-186 77-127 (644)
286 PF00485 PRK: Phosphoribulokin 95.4 0.013 2.8E-07 58.1 3.6 24 164-187 1-24 (194)
287 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.8E-07 53.7 3.3 22 165-186 1-22 (129)
288 PF13481 AAA_25: AAA domain; P 95.4 0.066 1.4E-06 53.1 8.6 42 163-204 33-81 (193)
289 cd02019 NK Nucleoside/nucleoti 95.4 0.014 3E-07 46.6 2.9 23 164-186 1-23 (69)
290 PRK00771 signal recognition pa 95.3 0.1 2.2E-06 58.1 10.5 87 161-252 94-184 (437)
291 PRK06067 flagellar accessory p 95.3 0.078 1.7E-06 54.4 9.1 47 162-213 25-71 (234)
292 COG0563 Adk Adenylate kinase a 95.3 0.038 8.1E-07 53.5 6.3 23 164-186 2-24 (178)
293 cd03283 ABC_MutS-like MutS-lik 95.3 0.056 1.2E-06 53.7 7.7 24 163-186 26-49 (199)
294 PRK08939 primosomal protein Dn 95.3 0.047 1E-06 58.0 7.5 100 161-280 155-260 (306)
295 PRK05480 uridine/cytidine kina 95.3 0.017 3.7E-07 58.1 4.1 27 160-186 4-30 (209)
296 cd02025 PanK Pantothenate kina 95.3 0.081 1.8E-06 53.4 8.8 41 164-205 1-41 (220)
297 cd03247 ABCC_cytochrome_bd The 95.3 0.042 9.1E-07 53.6 6.6 25 162-186 28-52 (178)
298 PF13306 LRR_5: Leucine rich r 95.3 0.04 8.6E-07 50.4 6.1 113 497-617 12-128 (129)
299 KOG2123 Uncharacterized conser 95.3 0.0013 2.8E-08 65.4 -4.0 95 522-621 20-123 (388)
300 TIGR00064 ftsY signal recognit 95.3 0.11 2.3E-06 54.3 9.9 39 161-202 71-109 (272)
301 PRK05800 cobU adenosylcobinami 95.2 0.0084 1.8E-07 57.7 1.6 49 163-218 2-50 (170)
302 PLN00020 ribulose bisphosphate 95.2 0.044 9.6E-07 58.1 6.9 26 161-186 147-172 (413)
303 COG3854 SpoIIIAA ncharacterize 95.2 0.036 7.9E-07 54.0 5.5 123 153-285 128-257 (308)
304 PRK12723 flagellar biosynthesi 95.1 0.088 1.9E-06 57.6 9.2 89 161-253 173-264 (388)
305 PRK08233 hypothetical protein; 95.1 0.017 3.7E-07 56.7 3.5 25 162-186 3-27 (182)
306 COG2884 FtsE Predicted ATPase 95.1 0.068 1.5E-06 50.7 7.0 27 161-187 27-53 (223)
307 KOG0727 26S proteasome regulat 95.1 1.6 3.4E-05 43.4 16.5 26 161-186 188-213 (408)
308 PTZ00301 uridine kinase; Provi 95.1 0.02 4.3E-07 57.1 3.8 25 162-186 3-27 (210)
309 KOG1947 Leucine rich repeat pr 95.1 0.004 8.7E-08 71.9 -1.4 87 568-676 187-280 (482)
310 PRK12727 flagellar biosynthesi 95.1 0.082 1.8E-06 59.3 8.7 87 162-253 350-438 (559)
311 KOG0728 26S proteasome regulat 95.0 0.54 1.2E-05 46.4 13.1 166 140-328 147-349 (404)
312 PTZ00088 adenylate kinase 1; P 95.0 0.032 6.9E-07 56.5 5.1 23 164-186 8-30 (229)
313 PRK12726 flagellar biosynthesi 95.0 0.11 2.3E-06 55.9 9.0 90 161-254 205-296 (407)
314 TIGR00235 udk uridine kinase. 95.0 0.023 4.9E-07 57.1 4.0 27 160-186 4-30 (207)
315 PF13671 AAA_33: AAA domain; P 95.0 0.021 4.5E-07 53.4 3.5 23 164-186 1-23 (143)
316 PRK06217 hypothetical protein; 95.0 0.042 9.2E-07 53.9 5.8 23 164-186 3-25 (183)
317 PRK14974 cell division protein 95.0 0.21 4.5E-06 53.6 11.3 90 161-254 139-233 (336)
318 COG1102 Cmk Cytidylate kinase 95.0 0.059 1.3E-06 49.7 6.0 44 164-221 2-45 (179)
319 KOG0729 26S proteasome regulat 95.0 0.066 1.4E-06 53.1 6.8 70 162-253 211-280 (435)
320 PF06309 Torsin: Torsin; Inte 95.0 0.15 3.2E-06 45.5 8.4 47 140-186 26-77 (127)
321 cd03223 ABCD_peroxisomal_ALDP 94.9 0.073 1.6E-06 51.2 7.1 25 162-186 27-51 (166)
322 PRK12678 transcription termina 94.9 0.049 1.1E-06 61.0 6.5 91 162-254 416-514 (672)
323 PRK07667 uridine kinase; Provi 94.9 0.03 6.5E-07 55.4 4.5 26 161-186 16-41 (193)
324 COG1066 Sms Predicted ATP-depe 94.9 0.054 1.2E-06 57.7 6.4 86 162-254 93-179 (456)
325 TIGR03878 thermo_KaiC_2 KaiC d 94.9 0.11 2.4E-06 54.0 8.8 39 162-203 36-74 (259)
326 TIGR00708 cobA cob(I)alamin ad 94.9 0.15 3.2E-06 48.7 8.7 117 162-281 5-140 (173)
327 PRK08533 flagellar accessory p 94.9 0.13 2.9E-06 52.3 9.1 48 162-214 24-71 (230)
328 PRK06762 hypothetical protein; 94.9 0.025 5.3E-07 54.6 3.6 25 162-186 2-26 (166)
329 cd01121 Sms Sms (bacterial rad 94.9 0.064 1.4E-06 58.5 7.2 87 162-254 82-169 (372)
330 COG0572 Udk Uridine kinase [Nu 94.9 0.028 6E-07 55.3 3.9 26 161-186 7-32 (218)
331 COG2607 Predicted ATPase (AAA+ 94.8 0.28 6.1E-06 48.5 10.6 49 137-187 58-110 (287)
332 PRK12724 flagellar biosynthesi 94.8 0.094 2E-06 57.3 8.3 25 162-186 223-247 (432)
333 KOG1514 Origin recognition com 94.8 1.4 3E-05 50.6 17.4 197 141-345 398-624 (767)
334 PF07728 AAA_5: AAA domain (dy 94.8 0.07 1.5E-06 49.6 6.5 42 165-212 2-43 (139)
335 TIGR01360 aden_kin_iso1 adenyl 94.8 0.024 5.3E-07 55.9 3.6 26 161-186 2-27 (188)
336 cd01124 KaiC KaiC is a circadi 94.8 0.11 2.3E-06 51.2 8.2 38 164-204 1-38 (187)
337 PF08433 KTI12: Chromatin asso 94.8 0.032 6.9E-07 58.0 4.4 25 163-187 2-26 (270)
338 PRK05703 flhF flagellar biosyn 94.8 0.11 2.4E-06 58.0 8.9 87 162-252 221-308 (424)
339 COG1419 FlhF Flagellar GTP-bin 94.8 0.25 5.5E-06 53.2 11.1 77 147-224 184-265 (407)
340 KOG0733 Nuclear AAA ATPase (VC 94.8 0.082 1.8E-06 58.9 7.6 151 162-336 545-718 (802)
341 TIGR00390 hslU ATP-dependent p 94.8 0.069 1.5E-06 58.0 7.0 78 139-218 12-104 (441)
342 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.064 1.4E-06 50.2 6.0 25 162-186 26-50 (144)
343 COG1121 ZnuC ABC-type Mn/Zn tr 94.8 0.11 2.4E-06 52.6 8.0 24 162-185 30-53 (254)
344 PF00560 LRR_1: Leucine Rich R 94.7 0.011 2.3E-07 35.1 0.5 21 547-567 1-21 (22)
345 cd02027 APSK Adenosine 5'-phos 94.7 0.11 2.5E-06 48.8 7.7 23 164-186 1-23 (149)
346 PRK03839 putative kinase; Prov 94.7 0.026 5.7E-07 55.2 3.5 23 164-186 2-24 (180)
347 PF00560 LRR_1: Leucine Rich R 94.7 0.013 2.9E-07 34.6 0.8 20 594-613 2-21 (22)
348 KOG0739 AAA+-type ATPase [Post 94.7 0.2 4.3E-06 50.9 9.3 92 138-253 132-235 (439)
349 PRK06002 fliI flagellum-specif 94.7 0.088 1.9E-06 58.2 7.6 89 162-254 165-265 (450)
350 COG0541 Ffh Signal recognition 94.7 1.7 3.8E-05 47.1 16.9 57 162-222 100-158 (451)
351 PRK04328 hypothetical protein; 94.7 0.12 2.6E-06 53.5 8.3 41 161-204 22-62 (249)
352 PF00154 RecA: recA bacterial 94.7 0.11 2.4E-06 54.9 8.0 85 162-254 53-142 (322)
353 TIGR00554 panK_bact pantothena 94.6 0.15 3.2E-06 53.5 8.9 27 160-186 60-86 (290)
354 cd03230 ABC_DR_subfamily_A Thi 94.6 0.099 2.1E-06 50.7 7.2 25 162-186 26-50 (173)
355 COG0542 clpA ATP-binding subun 94.6 0.039 8.6E-07 64.5 5.0 152 140-309 171-345 (786)
356 PRK09270 nucleoside triphospha 94.6 0.22 4.8E-06 50.8 10.1 28 160-187 31-58 (229)
357 PRK10867 signal recognition pa 94.6 0.13 2.9E-06 57.0 8.8 27 161-187 99-125 (433)
358 PRK07132 DNA polymerase III su 94.5 1.1 2.4E-05 47.3 15.2 166 150-341 5-184 (299)
359 TIGR01425 SRP54_euk signal rec 94.5 0.13 2.9E-06 56.7 8.6 27 161-187 99-125 (429)
360 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.039 8.4E-07 55.5 4.2 24 162-185 29-52 (213)
361 COG3640 CooC CO dehydrogenase 94.5 0.074 1.6E-06 52.3 5.8 43 164-208 2-44 (255)
362 cd03228 ABCC_MRP_Like The MRP 94.5 0.12 2.5E-06 50.1 7.3 26 161-186 27-52 (171)
363 PF00910 RNA_helicase: RNA hel 94.4 0.029 6.4E-07 49.4 2.8 23 165-187 1-23 (107)
364 cd01131 PilT Pilus retraction 94.4 0.048 1E-06 54.2 4.5 110 163-284 2-112 (198)
365 PRK00625 shikimate kinase; Pro 94.4 0.032 7E-07 53.8 3.2 23 164-186 2-24 (173)
366 COG4608 AppF ABC-type oligopep 94.4 0.16 3.5E-06 51.6 8.1 126 161-291 38-180 (268)
367 PRK04040 adenylate kinase; Pro 94.4 0.038 8.2E-07 54.2 3.6 24 163-186 3-26 (188)
368 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.03 6.5E-07 55.0 2.9 23 164-186 1-23 (183)
369 PRK10733 hflB ATP-dependent me 94.3 0.12 2.6E-06 61.1 8.3 128 163-312 186-337 (644)
370 PF03205 MobB: Molybdopterin g 94.3 0.081 1.8E-06 49.0 5.4 39 163-203 1-39 (140)
371 PF07726 AAA_3: ATPase family 94.3 0.035 7.7E-07 49.5 2.8 22 165-186 2-23 (131)
372 PF00006 ATP-synt_ab: ATP synt 94.3 0.16 3.5E-06 50.7 7.8 87 162-254 15-116 (215)
373 cd02023 UMPK Uridine monophosp 94.2 0.031 6.7E-07 55.7 2.8 23 164-186 1-23 (198)
374 PRK12597 F0F1 ATP synthase sub 94.2 0.23 5E-06 55.4 9.7 92 161-254 142-248 (461)
375 cd01135 V_A-ATPase_B V/A-type 94.2 0.31 6.7E-06 50.2 9.9 93 162-254 69-177 (276)
376 TIGR00959 ffh signal recogniti 94.1 0.25 5.4E-06 54.8 9.8 26 161-186 98-123 (428)
377 cd02024 NRK1 Nicotinamide ribo 94.1 0.035 7.7E-07 54.1 2.9 23 164-186 1-23 (187)
378 PRK09519 recA DNA recombinatio 94.1 0.16 3.4E-06 60.2 8.6 85 162-254 60-149 (790)
379 PRK05201 hslU ATP-dependent pr 94.1 0.1 2.2E-06 56.9 6.4 78 139-218 15-107 (443)
380 cd01122 GP4d_helicase GP4d_hel 94.1 0.4 8.6E-06 50.4 11.0 52 162-217 30-81 (271)
381 PF06745 KaiC: KaiC; InterPro 94.1 0.063 1.4E-06 54.8 4.7 42 162-205 19-60 (226)
382 PF13245 AAA_19: Part of AAA d 94.0 0.13 2.9E-06 41.8 5.6 26 161-186 9-34 (76)
383 PRK06995 flhF flagellar biosyn 94.0 0.23 5E-06 55.8 9.3 58 162-221 256-315 (484)
384 PRK08972 fliI flagellum-specif 94.0 0.21 4.5E-06 55.1 8.7 88 162-254 162-263 (444)
385 TIGR01069 mutS2 MutS2 family p 94.0 0.098 2.1E-06 62.9 6.8 181 161-364 321-522 (771)
386 KOG2170 ATPase of the AAA+ sup 94.0 0.11 2.4E-06 53.0 6.0 100 140-255 83-190 (344)
387 PRK14721 flhF flagellar biosyn 94.0 0.33 7.1E-06 53.6 10.2 60 162-222 191-251 (420)
388 PRK00131 aroK shikimate kinase 94.0 0.05 1.1E-06 52.9 3.6 25 162-186 4-28 (175)
389 TIGR02322 phosphon_PhnN phosph 94.0 0.045 9.8E-07 53.5 3.3 24 163-186 2-25 (179)
390 COG0529 CysC Adenylylsulfate k 93.9 0.19 4.1E-06 47.2 7.0 31 157-187 18-48 (197)
391 COG1428 Deoxynucleoside kinase 93.9 0.049 1.1E-06 52.9 3.2 25 162-186 4-28 (216)
392 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.19 4.2E-06 55.6 8.2 91 162-254 138-243 (449)
393 PRK13531 regulatory ATPase Rav 93.9 0.1 2.2E-06 58.1 6.0 43 140-186 21-63 (498)
394 PRK10463 hydrogenase nickel in 93.9 0.13 2.9E-06 53.4 6.5 37 150-186 92-128 (290)
395 PRK00889 adenylylsulfate kinas 93.9 0.063 1.4E-06 52.3 4.0 26 161-186 3-28 (175)
396 TIGR00150 HI0065_YjeE ATPase, 93.8 0.093 2E-06 47.8 4.8 25 162-186 22-46 (133)
397 PRK14723 flhF flagellar biosyn 93.8 0.44 9.6E-06 56.3 11.4 87 162-253 185-273 (767)
398 smart00534 MUTSac ATPase domai 93.8 0.015 3.2E-07 57.2 -0.6 22 164-185 1-22 (185)
399 PRK06851 hypothetical protein; 93.8 1.6 3.4E-05 47.3 14.8 44 159-204 211-254 (367)
400 cd02028 UMPK_like Uridine mono 93.8 0.045 9.8E-07 53.3 2.8 23 164-186 1-23 (179)
401 cd02020 CMPK Cytidine monophos 93.7 0.048 1E-06 51.2 3.0 23 164-186 1-23 (147)
402 PRK05342 clpX ATP-dependent pr 93.7 0.094 2E-06 58.0 5.6 24 163-186 109-132 (412)
403 TIGR02030 BchI-ChlI magnesium 93.7 0.099 2.1E-06 56.2 5.6 47 138-186 3-49 (337)
404 cd00227 CPT Chloramphenicol (C 93.7 0.054 1.2E-06 52.7 3.4 24 163-186 3-26 (175)
405 cd02029 PRK_like Phosphoribulo 93.7 1.2 2.6E-05 45.6 12.9 24 164-187 1-24 (277)
406 TIGR02655 circ_KaiC circadian 93.7 0.19 4.1E-06 57.5 8.2 40 162-204 263-302 (484)
407 cd02021 GntK Gluconate kinase 93.7 0.047 1E-06 51.6 2.8 23 164-186 1-23 (150)
408 TIGR00073 hypB hydrogenase acc 93.7 0.067 1.5E-06 53.7 4.0 31 156-186 16-46 (207)
409 COG1936 Predicted nucleotide k 93.7 0.052 1.1E-06 50.8 2.9 20 164-183 2-21 (180)
410 PRK08149 ATP synthase SpaL; Va 93.7 0.3 6.5E-06 53.9 9.3 89 161-254 150-252 (428)
411 PRK14530 adenylate kinase; Pro 93.7 0.056 1.2E-06 54.6 3.5 24 163-186 4-27 (215)
412 PF07724 AAA_2: AAA domain (Cd 93.7 0.083 1.8E-06 50.9 4.4 41 162-204 3-43 (171)
413 PRK10751 molybdopterin-guanine 93.6 0.07 1.5E-06 51.0 3.8 27 161-187 5-31 (173)
414 CHL00081 chlI Mg-protoporyphyr 93.6 0.1 2.2E-06 56.1 5.4 49 136-186 14-62 (350)
415 KOG0744 AAA+-type ATPase [Post 93.6 0.27 5.9E-06 50.6 7.9 27 162-188 177-203 (423)
416 PRK13949 shikimate kinase; Pro 93.6 0.063 1.4E-06 51.8 3.4 23 164-186 3-25 (169)
417 PRK08927 fliI flagellum-specif 93.5 0.36 7.9E-06 53.4 9.5 89 161-254 157-259 (442)
418 PF12775 AAA_7: P-loop contain 93.5 0.044 9.5E-07 57.2 2.4 56 151-210 23-78 (272)
419 TIGR03263 guanyl_kin guanylate 93.5 0.054 1.2E-06 53.0 2.9 24 163-186 2-25 (180)
420 PRK14527 adenylate kinase; Pro 93.5 0.071 1.5E-06 52.7 3.7 26 161-186 5-30 (191)
421 KOG1532 GTPase XAB1, interacts 93.4 0.086 1.9E-06 52.7 4.0 60 161-221 18-86 (366)
422 cd01136 ATPase_flagellum-secre 93.4 0.44 9.5E-06 50.8 9.7 88 162-254 69-170 (326)
423 TIGR01039 atpD ATP synthase, F 93.4 0.51 1.1E-05 52.4 10.4 92 161-254 142-248 (461)
424 PRK11823 DNA repair protein Ra 93.4 0.15 3.2E-06 57.5 6.5 40 162-204 80-119 (446)
425 PF00625 Guanylate_kin: Guanyl 93.4 0.11 2.3E-06 51.0 4.8 36 162-200 2-37 (183)
426 PRK13947 shikimate kinase; Pro 93.4 0.066 1.4E-06 51.9 3.2 23 164-186 3-25 (171)
427 cd01125 repA Hexameric Replica 93.3 0.39 8.4E-06 49.4 9.1 24 164-187 3-26 (239)
428 PRK05922 type III secretion sy 93.3 0.41 8.8E-06 52.9 9.5 89 161-254 156-258 (434)
429 cd01134 V_A-ATPase_A V/A-type 93.3 0.26 5.6E-06 52.3 7.6 48 162-214 157-205 (369)
430 PRK13765 ATP-dependent proteas 93.3 0.15 3.3E-06 59.5 6.5 75 139-220 31-105 (637)
431 PRK00409 recombination and DNA 93.2 0.23 5E-06 59.9 8.2 178 161-364 326-527 (782)
432 COG0488 Uup ATPase components 93.2 0.14 3.1E-06 58.4 6.1 128 164-296 350-511 (530)
433 COG0467 RAD55 RecA-superfamily 93.2 0.1 2.2E-06 54.4 4.7 42 161-205 22-63 (260)
434 TIGR01040 V-ATPase_V1_B V-type 93.2 0.27 5.9E-06 54.2 7.9 93 162-254 141-258 (466)
435 cd03243 ABC_MutS_homologs The 93.2 0.032 6.9E-07 55.8 0.7 23 163-185 30-52 (202)
436 TIGR00382 clpX endopeptidase C 93.2 0.3 6.4E-06 53.9 8.2 24 163-186 117-140 (413)
437 PRK00300 gmk guanylate kinase; 93.2 0.072 1.6E-06 53.4 3.3 26 161-186 4-29 (205)
438 PRK09280 F0F1 ATP synthase sub 93.1 0.34 7.4E-06 53.8 8.6 92 161-254 143-249 (463)
439 cd01132 F1_ATPase_alpha F1 ATP 93.1 0.28 6.1E-06 50.5 7.4 89 162-255 69-173 (274)
440 COG5238 RNA1 Ran GTPase-activa 93.1 0.033 7.2E-07 55.6 0.7 177 496-677 29-254 (388)
441 PRK12339 2-phosphoglycerate ki 93.1 0.086 1.9E-06 52.1 3.6 25 162-186 3-27 (197)
442 cd00464 SK Shikimate kinase (S 93.1 0.078 1.7E-06 50.2 3.3 22 165-186 2-23 (154)
443 PRK05439 pantothenate kinase; 93.1 0.46 1E-05 50.2 9.1 26 161-186 85-110 (311)
444 COG1124 DppF ABC-type dipeptid 93.0 0.075 1.6E-06 52.7 3.0 26 161-186 32-57 (252)
445 PRK06936 type III secretion sy 93.0 0.4 8.7E-06 53.0 9.0 89 161-254 161-263 (439)
446 PRK13975 thymidylate kinase; P 93.0 0.087 1.9E-06 52.4 3.6 24 163-186 3-26 (196)
447 KOG3864 Uncharacterized conser 93.0 0.011 2.5E-07 56.4 -2.5 35 771-806 152-186 (221)
448 COG0003 ArsA Predicted ATPase 93.0 0.17 3.7E-06 53.8 5.8 48 162-212 2-49 (322)
449 cd03282 ABC_MSH4_euk MutS4 hom 93.0 0.093 2E-06 52.2 3.7 24 162-185 29-52 (204)
450 cd00071 GMPK Guanosine monopho 93.0 0.069 1.5E-06 49.4 2.6 23 164-186 1-23 (137)
451 PF03193 DUF258: Protein of un 93.0 0.14 3E-06 48.3 4.6 35 149-186 25-59 (161)
452 PRK05986 cob(I)alamin adenolsy 93.0 0.29 6.4E-06 47.4 6.9 117 162-281 22-158 (191)
453 PF03308 ArgK: ArgK protein; 93.0 0.23 5.1E-06 50.1 6.4 54 152-206 17-72 (266)
454 PF10236 DAP3: Mitochondrial r 93.0 7.1 0.00015 41.7 18.2 49 291-339 258-306 (309)
455 TIGR01313 therm_gnt_kin carboh 93.0 0.067 1.5E-06 51.3 2.6 22 165-186 1-22 (163)
456 PRK14529 adenylate kinase; Pro 93.0 0.33 7.3E-06 48.7 7.6 22 165-186 3-24 (223)
457 COG1703 ArgK Putative periplas 93.0 0.22 4.8E-06 51.0 6.2 59 151-210 38-98 (323)
458 PF08477 Miro: Miro-like prote 92.9 0.086 1.9E-06 47.3 3.2 22 165-186 2-23 (119)
459 PRK05057 aroK shikimate kinase 92.9 0.087 1.9E-06 51.0 3.3 24 163-186 5-28 (172)
460 PRK03846 adenylylsulfate kinas 92.9 0.098 2.1E-06 52.0 3.8 27 160-186 22-48 (198)
461 PRK10078 ribose 1,5-bisphospho 92.9 0.077 1.7E-06 52.2 3.0 24 163-186 3-26 (186)
462 cd01672 TMPK Thymidine monopho 92.9 0.23 5E-06 49.3 6.6 24 164-187 2-25 (200)
463 KOG1970 Checkpoint RAD17-RFC c 92.9 0.92 2E-05 50.4 11.2 48 147-199 88-142 (634)
464 TIGR03498 FliI_clade3 flagella 92.9 0.34 7.4E-06 53.5 8.2 89 161-254 139-241 (418)
465 COG2019 AdkA Archaeal adenylat 92.9 0.1 2.2E-06 48.4 3.3 25 162-186 4-28 (189)
466 COG0465 HflB ATP-dependent Zn 92.9 0.17 3.7E-06 57.7 5.9 47 140-186 151-207 (596)
467 PRK06793 fliI flagellum-specif 92.9 0.3 6.6E-06 53.9 7.7 91 161-255 155-258 (432)
468 PRK13407 bchI magnesium chelat 92.8 0.13 2.9E-06 55.1 4.8 48 137-186 6-53 (334)
469 cd00820 PEPCK_HprK Phosphoenol 92.8 0.096 2.1E-06 45.5 3.0 22 162-183 15-36 (107)
470 PF03266 NTPase_1: NTPase; In 92.7 0.097 2.1E-06 50.2 3.3 23 165-187 2-24 (168)
471 TIGR00416 sms DNA repair prote 92.7 0.24 5.3E-06 55.8 7.0 40 162-204 94-133 (454)
472 TIGR01041 ATP_syn_B_arch ATP s 92.7 0.43 9.3E-06 53.3 8.7 92 162-254 141-249 (458)
473 cd00984 DnaB_C DnaB helicase C 92.7 0.87 1.9E-05 46.9 10.7 51 162-216 13-63 (242)
474 PF13521 AAA_28: AAA domain; P 92.7 0.095 2.1E-06 50.3 3.2 21 165-185 2-22 (163)
475 PRK10416 signal recognition pa 92.7 0.72 1.6E-05 49.3 10.1 27 161-187 113-139 (318)
476 PRK15453 phosphoribulokinase; 92.6 0.12 2.6E-06 53.2 4.0 27 160-186 3-29 (290)
477 PF13504 LRR_7: Leucine rich r 92.6 0.084 1.8E-06 28.9 1.6 17 862-879 1-17 (17)
478 KOG3347 Predicted nucleotide k 92.6 0.091 2E-06 47.6 2.6 35 162-204 7-41 (176)
479 TIGR00041 DTMP_kinase thymidyl 92.6 0.3 6.5E-06 48.4 6.8 25 163-187 4-28 (195)
480 PF02374 ArsA_ATPase: Anion-tr 92.6 0.16 3.5E-06 54.0 5.0 40 163-205 2-41 (305)
481 TIGR00176 mobB molybdopterin-g 92.5 0.1 2.3E-06 49.3 3.2 24 164-187 1-24 (155)
482 TIGR02902 spore_lonB ATP-depen 92.5 0.22 4.7E-06 57.5 6.4 46 139-186 65-110 (531)
483 PRK09099 type III secretion sy 92.5 0.46 9.9E-06 52.8 8.6 90 161-254 162-264 (441)
484 PRK05917 DNA polymerase III su 92.5 2 4.3E-05 44.9 12.8 38 149-186 5-43 (290)
485 PRK07594 type III secretion sy 92.5 0.32 7E-06 53.8 7.4 89 161-254 154-256 (433)
486 COG0464 SpoVK ATPases of the A 92.5 0.18 3.9E-06 58.2 5.7 130 161-312 275-425 (494)
487 PRK07721 fliI flagellum-specif 92.5 0.39 8.4E-06 53.6 8.0 27 160-186 156-182 (438)
488 PF13504 LRR_7: Leucine rich r 92.4 0.089 1.9E-06 28.8 1.5 16 547-562 2-17 (17)
489 PTZ00185 ATPase alpha subunit; 92.4 0.85 1.8E-05 50.9 10.2 93 162-254 189-300 (574)
490 PLN02200 adenylate kinase fami 92.3 0.12 2.7E-06 52.6 3.7 25 162-186 43-67 (234)
491 PRK13695 putative NTPase; Prov 92.3 0.19 4.2E-06 48.7 4.9 24 164-187 2-25 (174)
492 PTZ00494 tuzin-like protein; P 92.3 3 6.5E-05 45.5 13.7 162 138-309 370-543 (664)
493 PRK13946 shikimate kinase; Pro 92.3 0.12 2.5E-06 50.8 3.3 25 162-186 10-34 (184)
494 PRK07196 fliI flagellum-specif 92.2 0.47 1E-05 52.5 8.2 26 161-186 154-179 (434)
495 PF00005 ABC_tran: ABC transpo 92.2 0.098 2.1E-06 48.4 2.6 25 162-186 11-35 (137)
496 PRK04182 cytidylate kinase; Pr 92.2 0.12 2.6E-06 50.4 3.4 23 164-186 2-24 (180)
497 TIGR00764 lon_rel lon-related 92.2 0.39 8.4E-06 56.3 8.0 75 138-219 17-91 (608)
498 PRK09825 idnK D-gluconate kina 92.2 0.12 2.6E-06 50.1 3.3 24 163-186 4-27 (176)
499 PRK10875 recD exonuclease V su 92.2 0.29 6.3E-06 57.1 6.9 55 162-216 167-221 (615)
500 KOG0738 AAA+-type ATPase [Post 92.2 0.14 3E-06 54.1 3.7 25 162-186 245-269 (491)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-90 Score=807.88 Aligned_cols=790 Identities=30% Similarity=0.466 Sum_probs=591.2
Q ss_pred HhHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 043332 11 FECVGPPIRQYVRRHRKLSEIMKNLERPLQELNCKKADIEATLKAECDLGNKQPSNEVNDWLENVERINSEAHSFEEEVK 90 (897)
Q Consensus 11 ~~~l~~~l~~~~~~~~~~~~~i~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~v~~Wl~~l~~~~~~~~d~~d~~~ 90 (897)
+++++..+..++....+.++.+..|++++..|+++++|+++ .+.....+..|.+.+++++|+++|+++.+.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a---------~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDA---------KRDDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---------hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999885 344456789999999999999999976542
Q ss_pred c-------CCcc---------------------ccccchHHHHHHHHHHHHHHHhccCccccccCCCCCCCccc---ccc
Q 043332 91 K-------GKYF---------------------SRARLGKHAEEKIQEVKEYHQKACSFTSLVIAPPPTGGLTL---TTA 139 (897)
Q Consensus 91 ~-------~~~~---------------------~r~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 139 (897)
- .... ..+++.+++-..+++++.+..++....+-....++...... ++.
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 1 0000 01234555555666666555443222111101111111112 222
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
. ||. +..++++++.|.+++..+++|+||||+||||||++++|+...+..+||.++||+||+.++...++.+|++.++
T Consensus 160 ~-VG~--e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 160 D-VGL--ETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred c-ccH--HHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 4 998 8899999999999888999999999999999999999998558899999999999999999999999999998
Q ss_pred CCCCCChh--HHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhcc-cccce-Eecc
Q 043332 220 QSLPENED--EVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCRF-MDCKE-IGVE 295 (897)
Q Consensus 220 ~~~~~~~~--~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~-~~~~~-~~l~ 295 (897)
.......+ ..+.+..+.+.+ +++||+||+||||+..+|+.++.++|...+||||++|||++.||.. |++.. ++++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L-~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLL-EGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHh-ccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 64332222 234555555555 6899999999999999999999999988899999999999999998 77755 9999
Q ss_pred CCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHHhhcccc-CCCchh
Q 043332 296 LLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRGLVRS-RNGVNA 374 (897)
Q Consensus 296 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l~~~~~~-~~~~~~ 374 (897)
.|+++|||.||+++++.......+.++++|++|+++|+|+|||++++|+.|+.|.+..+|+++.+.+...... ..++.+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999998775545566899999999999999999999999999999999999999988776333 235678
Q ss_pred hhhhhhhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHHHHHHHHHHccccccccC
Q 043332 375 DVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILNRLVNCCLLESAKD 454 (897)
Q Consensus 375 ~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 454 (897)
.+++++.+||++|| +++|.||+|||+||+||.|+++.|+.+|+||||+.+.......++.|++|+.+|+++++++...+
T Consensus 396 ~i~~iLklSyd~L~-~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 396 SILPILKLSYDNLP-EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhHHhhhccHhhhh-HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 99999999999999 89999999999999999999999999999999999877788899999999999999999998763
Q ss_pred ---CCeEEehHHHHHHHHhhhc-----CCCceeeecCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEE
Q 043332 455 ---GRCVKMHDLIRDMALSITS-----ESPLFMAKAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTL 526 (897)
Q Consensus 455 ---~~~~~mHdlv~d~a~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L 526 (897)
..+|+|||+|||+|.++++ ++. .++..+..+.+.|....| ..+|++++.+|.+..++.. ..++.|++|
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~--~~~~~L~tL 550 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGS--SENPKLRTL 550 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccch-hheeEEEEeccchhhccCC--CCCCccceE
Confidence 3789999999999999999 565 566666666677766555 6789999999999888654 467799999
Q ss_pred EccCCCC-cccCChhHhhCCCCccEEEecCCC-CCcCCcccccCcccceeeccccccccCCc-chhccccCCEeeccCC-
Q 043332 527 LLQANGN-LWTIPECFFVHMHGLKVLNLSHTD-IEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEAT- 602 (897)
Q Consensus 527 ~l~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~- 602 (897)
.+.+|.. +..++..+|..++.||+|||++|. +..+|++|++|.|||||+++++ .++.+| ++.+|..|.+|++..+
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheecccccc
Confidence 9999853 778888899999999999999865 7788988888888888888884 566777 6777777777777776
Q ss_pred cCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhh
Q 043332 603 RIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNI 682 (897)
Q Consensus 603 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~ 682 (897)
.+..+|..+..|.+|++|.+..... ......++++..+.+ |+.+.....+...+..
T Consensus 630 ~l~~~~~i~~~L~~Lr~L~l~~s~~-----------------------~~~~~~l~el~~Le~-L~~ls~~~~s~~~~e~ 685 (889)
T KOG4658|consen 630 RLESIPGILLELQSLRVLRLPRSAL-----------------------SNDKLLLKELENLEH-LENLSITISSVLLLED 685 (889)
T ss_pred ccccccchhhhcccccEEEeecccc-----------------------ccchhhHHhhhcccc-hhhheeecchhHhHhh
Confidence 3334444455567777766654321 111112233333333 3333332222100000
Q ss_pred hhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccccceeEEeccCCcccccccCcccCCc
Q 043332 683 YVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGL 762 (897)
Q Consensus 683 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 762 (897)
.. ...+|.++.. .+.+..+........+..+.+|+.|.+.+|......... .+-
T Consensus 686 l~---~~~~L~~~~~-------------------~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~----~~~ 739 (889)
T KOG4658|consen 686 LL---GMTRLRSLLQ-------------------SLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW----EES 739 (889)
T ss_pred hh---hhHHHHHHhH-------------------hhhhcccccceeecccccccCcceEEEEcCCCchhhccc----ccc
Confidence 00 0001111000 001111222222334567788999999888754432211 111
Q ss_pred cccc-cccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCcccee
Q 043332 763 VNIG-KFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRL 841 (897)
Q Consensus 763 ~~~~-~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L 841 (897)
.... .|+ ++..+.+.+|..+.++.+..+ .++|+.|++.+|..+++++...+...... .....|+++..+
T Consensus 740 ~~~~~~f~-~l~~~~~~~~~~~r~l~~~~f---~~~L~~l~l~~~~~~e~~i~~~k~~~~l~------~~i~~f~~~~~l 809 (889)
T KOG4658|consen 740 LIVLLCFP-NLSKVSILNCHMLRDLTWLLF---APHLTSLSLVSCRLLEDIIPKLKALLELK------ELILPFNKLEGL 809 (889)
T ss_pred cchhhhHH-HHHHHHhhccccccccchhhc---cCcccEEEEecccccccCCCHHHHhhhcc------cEEecccccccc
Confidence 1112 377 899999999988888766544 45899999999999998876554322110 123478888888
Q ss_pred -ecccCcccccccCCCCcccCCCccEEEecCCCCCccccCC
Q 043332 842 -GFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLKRLSLS 881 (897)
Q Consensus 842 -~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~ 881 (897)
.+.+++.+..+.. ....++.|+.+.+..||+++.+|.-
T Consensus 810 ~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 810 RMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred eeeecCCCCceeEe--cccCccchhheehhcCcccccCccc
Confidence 5888888888877 5566778999999999999988865
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.9e-61 Score=598.62 Aligned_cols=660 Identities=20% Similarity=0.276 Sum_probs=452.6
Q ss_pred ccccchhhHHHHHHHHHHhc--CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe---CCC---------
Q 043332 139 ATLAGEKTKKVVERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV---SQP--------- 204 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~--------- 204 (897)
..+||+ +..++++..+|. .+++++|+||||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~--~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 184 EDFVGI--EDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccch--HHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccc
Confidence 469998 777788877764 4568999999999999999999999986 367888877641 111
Q ss_pred --CC-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCc
Q 043332 205 --LD-LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSL 281 (897)
Q Consensus 205 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~ 281 (897)
++ ...++++++..+......... ....+.+.+ +++|+||||||||+..+|+.+.....+.++||+||||||+.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L-~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERL-KHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHH-hCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 01 123445555544322111110 112333444 68899999999999999988876666668899999999999
Q ss_pred hhhcccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHH
Q 043332 282 GVCRFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALN 360 (897)
Q Consensus 282 ~v~~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~ 360 (897)
.++..+++.. |+++.+++++||+||++.|+.... .+..+.+++++|+++|+|+|||++++|+.|+++ +..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9998776666 999999999999999999987543 355678999999999999999999999999985 6789999999
Q ss_pred HHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHHHHH
Q 043332 361 ELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTIL 440 (897)
Q Consensus 361 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 440 (897)
+++.. ....|..+|++||+.|+++..|.||+++|+|+.++.+ ..+..|+|.+.... +..+
T Consensus 413 ~L~~~------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l 472 (1153)
T PLN03210 413 RLRNG------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGL 472 (1153)
T ss_pred HHHhC------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhCh
Confidence 98753 2468999999999999855689999999999998654 34677888765432 2238
Q ss_pred HHHHHccccccccCCCeEEehHHHHHHHHhhhcCCC------ceeeec---------CC---Cc----------CC--Cc
Q 043332 441 NRLVNCCLLESAKDGRCVKMHDLIRDMALSITSESP------LFMAKA---------GL---RL----------QE--FP 490 (897)
Q Consensus 441 ~~L~~~~ll~~~~~~~~~~mHdlv~d~a~~~~~~~~------~~~~~~---------~~---~~----------~~--~p 490 (897)
+.|+++||++... ..+.|||++|++|+++++++. .+.... .. .. .+ +.
T Consensus 473 ~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 473 KNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 8999999998753 469999999999999987552 111110 00 00 00 00
Q ss_pred -cchhccccccEEEccccccc-------cCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC
Q 043332 491 -VEQEWKENLERVSLMKNNIK-------EIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP 562 (897)
Q Consensus 491 -~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 562 (897)
.......+++.|.+..+... .+|..+..-.++|+.|.+.++ .+..+|..+ .+.+|++|+++++.+..+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f--~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF--RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC--CccCCcEEECcCccccccc
Confidence 01122345555555443211 233332222346888888877 677788764 5789999999999999999
Q ss_pred cccccCcccceeeccccccccCCcchhccccCCEeeccCC-cCcccCccccCCCCCCEEeCCCCC-CCcCCCCcccCCcc
Q 043332 563 SSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEAT-RIEEVPEGMEMLENLSYLYLYSLP-LKKFPTGILPRLRD 640 (897)
Q Consensus 563 ~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~ 640 (897)
..+..+++|++|+|++|..++.+|.++.+++|++|++++| .+..+|..++++++|++|++++|. +..+|.++ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCC
Confidence 9999999999999999888899999999999999999998 678899999999999999999985 78888764 7899
Q ss_pred cCeEecccCchhhhhcHHHHHh-hhcccceeEEEeccchhhhhhhhccCCCCceeeEEEec-ccccc-------cccccc
Q 043332 641 LYKLKLSFGREALRETVEEAAR-LSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLS-ASDMR-------GILITD 711 (897)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~l~~-l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~-~~~~~-------~~~~~~ 711 (897)
|+.|+++.+... ..+.. ..+ |+.|++..+.+..++.... ..+|..|.+... ...++ ......
T Consensus 706 L~~L~Lsgc~~L-----~~~p~~~~n-L~~L~L~~n~i~~lP~~~~---l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 706 LYRLNLSGCSRL-----KSFPDISTN-ISWLDLDETAIEEFPSNLR---LENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCEEeCCCCCCc-----cccccccCC-cCeeecCCCcccccccccc---ccccccccccccchhhccccccccchhhhhc
Confidence 999999843321 11212 345 8888888887766554321 223333332210 00000 000111
Q ss_pred cccccceeeecccccCCCCc-ccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhh
Q 043332 712 LEVDKSVSLMNCKICEREEP-IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQ 790 (897)
Q Consensus 712 ~~~l~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~ 790 (897)
.+.|+.|.+++|......+. +..+++|+.|.+++|..+..+ |....++ +|+.|++++|..+..+|..
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L----------P~~~~L~-sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL----------PTGINLE-SLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee----------CCCCCcc-ccCEEECCCCCcccccccc-
Confidence 23455555555543332222 444555555555555433321 2211334 5555555555555443221
Q ss_pred hhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEec
Q 043332 791 LLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVR 870 (897)
Q Consensus 791 ~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~ 870 (897)
..+|+.|++++ +.+++++ .....+++|+.|+|.+|++|+.+.. ....+++|+.++++
T Consensus 845 ----~~nL~~L~Ls~-n~i~~iP----------------~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 845 ----STNISDLNLSR-TGIEEVP----------------WWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFS 901 (1153)
T ss_pred ----ccccCEeECCC-CCCccCh----------------HHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecC
Confidence 23455555555 2333332 1123588999999999999999876 44457899999999
Q ss_pred CCCCCccccC
Q 043332 871 GCPKLKRLSL 880 (897)
Q Consensus 871 ~C~~L~~lp~ 880 (897)
+|++|+.++.
T Consensus 902 ~C~~L~~~~l 911 (1153)
T PLN03210 902 DCGALTEASW 911 (1153)
T ss_pred CCcccccccC
Confidence 9999987643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.7e-43 Score=376.42 Aligned_cols=276 Identities=36% Similarity=0.646 Sum_probs=222.9
Q ss_pred HHHHHHHHHHhcC--CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-
Q 043332 147 KKVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP- 223 (897)
Q Consensus 147 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 223 (897)
+.++++|.++|.+ ++.++|+|+||||+||||||++++++.. ...+|+.++|+.++...+...++..|+.+++....
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~-~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR-IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH-HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc-cccccccccccccccccccccccccccccccccccc
Confidence 6789999999987 7899999999999999999999999863 67899999999999999999999999999987633
Q ss_pred --CChhHHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhccccc--ceEeccCCCH
Q 043332 224 --ENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCRFMDC--KEIGVELLSQ 299 (897)
Q Consensus 224 --~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~--~~~~l~~L~~ 299 (897)
...+.......+.+.+ .++++||||||||+...|+.+...++....|++||||||+..++..+.. ..+++++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhh-ccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2344555666666666 5679999999999999998888777777789999999999999887764 3399999999
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHHhhccccCCCchhhhhhh
Q 043332 300 EEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRGLVRSRNGVNADVLGR 379 (897)
Q Consensus 300 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 379 (897)
+||++||.+.++.......+..++.+++|+++|+|+|||++++|++|+.+.+..+|+++++.+........+....++.+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765422345567789999999999999999999999766678899999998877665433456889999
Q ss_pred hhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchh
Q 043332 380 LEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEE 425 (897)
Q Consensus 380 l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 425 (897)
+.+||+.|| +++|+||+|||+||+++.|+++.++++|+++|||..
T Consensus 240 l~~s~~~L~-~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLP-DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSH-TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCC-ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999 699999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.6e-22 Score=249.85 Aligned_cols=361 Identities=16% Similarity=0.160 Sum_probs=153.9
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC-cCCcccccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE-VLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L 576 (897)
+++.|++++|.+....+..+..+++|++|++++|.....+|..+|.++++|++|+|++|.++ .+|. +.+++|++|+|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 34445555544443333333444555555555542222444444444555555555555443 2232 33444555555
Q ss_pred cccccccCCc-chhccccCCEeeccCCcCc-ccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhh
Q 043332 577 RYCLRLRRVP-SVAKLLALHYLDLEATRIE-EVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALR 654 (897)
Q Consensus 577 ~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (897)
++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|.+....+..++++++|++|+++ .+....
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~ 226 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG-YNNLSG 226 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc-CCccCC
Confidence 5443333444 3445555555555554433 344444555555555555444332222223444555555444 222222
Q ss_pred hcHHHHHhhhcccceeEEEeccchh-hhhhhhccCCCCceeeEEEeccc--ccccccccccccccceeeecccccCCCCc
Q 043332 655 ETVEEAARLSNRLDTFEGHFSTLKD-FNIYVKSTDGRGSKNYCLLLSAS--DMRGILITDLEVDKSVSLMNCKICEREEP 731 (897)
Q Consensus 655 ~~~~~l~~l~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 731 (897)
..+..++.+++ |+.|+++.|.+.. ++..+ ....+|+.|.+..+.. ..+..+. .++.++.+++++|.+.+..+.
T Consensus 227 ~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 227 EIPYEIGGLTS-LNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred cCChhHhcCCC-CCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCCh
Confidence 33334444444 5555544443321 11111 1122333333322211 1111221 344455555555554433332
Q ss_pred -ccCccccceeEEeccCCcccccccCcccCCcc-ccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccc
Q 043332 732 -IVLPEDVQFLQMFEVSDVASLNDVLPREQGLV-NIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSI 809 (897)
Q Consensus 732 -l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l 809 (897)
+..+++|+.|.++++.-.. ..| .+..++ +|+.|++++|.....+|. .+..+++|+.|++++|. +
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~----------~~~~~~~~l~-~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~-l 368 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTG----------KIPVALTSLP-RLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNN-L 368 (968)
T ss_pred hHcCCCCCcEEECCCCccCC----------cCChhHhcCC-CCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCe-e
Confidence 3445555555555443111 011 133444 555555555543333322 13344455555555432 1
Q ss_pred hhhcccc----cchhhh-----hhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCCccccC
Q 043332 810 EEIVVVE----DEETEK-----ELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLKRLSL 880 (897)
Q Consensus 810 ~~i~~~~----~~~~~~-----~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 880 (897)
...+... ...... .+.+..+.....+++|+.|++.+|.-...++. ....+++|+.|++++|.-...+|.
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCccCh
Confidence 1110000 000000 00000011122577888888888754333332 334578899999988865545554
Q ss_pred C
Q 043332 881 S 881 (897)
Q Consensus 881 ~ 881 (897)
.
T Consensus 447 ~ 447 (968)
T PLN00113 447 R 447 (968)
T ss_pred h
Confidence 3
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-24 Score=230.07 Aligned_cols=339 Identities=21% Similarity=0.261 Sum_probs=232.5
Q ss_pred eeeecCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCC-CcccCChhHhhCCCCccEEEecCC
Q 043332 478 FMAKAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANG-NLWTIPECFFVHMHGLKVLNLSHT 556 (897)
Q Consensus 478 ~~~~~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~ 556 (897)
++..+...+..+|.+.....+++||++.+|++..+-.. .+.++.||++++..|. ....+|..+| ++..|.+||||+|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 33444556778898888888999999999998876543 3578999999998883 2345888875 7999999999999
Q ss_pred CCCcCCcccccCcccceeeccccccccCCc-c-hhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCc
Q 043332 557 DIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGI 634 (897)
Q Consensus 557 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 634 (897)
.+.+.|..+..-+++-+|+||+| .+..+| + +-+|+.|-+|||++|+++.+|+.+..|.+|++|.+++|.+..+-...
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 99999999999999999999997 788888 4 88999999999999999999999999999999999999876655445
Q ss_pred ccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEeccccccccccccccc
Q 043332 635 LPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEV 714 (897)
Q Consensus 635 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 714 (897)
+..|++|++|.++.-+......+.++..+.+ |..++++.|++..++.-+- .++.
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~dvDlS~N~Lp~vPecly-------------------------~l~~ 246 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRDVDLSENNLPIVPECLY-------------------------KLRN 246 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhh-hhhccccccCCCcchHHHh-------------------------hhhh
Confidence 6778899999998333333344566777888 8889999888766554321 3344
Q ss_pred ccceeeecccccCCCCcccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCC-CCCChhhhh
Q 043332 715 DKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNL-KNLFSLQLL 792 (897)
Q Consensus 715 l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l-~~l~~~~~l 792 (897)
|+.|+|+++.+.....-.....+|++|+++.+. ...+|. +..++ +|+.|.+.++..- +.+|+- +
T Consensus 247 LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-----------Lt~LP~avcKL~-kL~kLy~n~NkL~FeGiPSG--I 312 (1255)
T KOG0444|consen 247 LRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-----------LTVLPDAVCKLT-KLTKLYANNNKLTFEGIPSG--I 312 (1255)
T ss_pred hheeccCcCceeeeeccHHHHhhhhhhccccch-----------hccchHHHhhhH-HHHHHHhccCcccccCCccc--h
Confidence 555566665554333334445566666666554 222443 44555 6666665554321 123222 4
Q ss_pred hccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCC
Q 043332 793 PALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGC 872 (897)
Q Consensus 793 ~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 872 (897)
..|.+|+.+...+ +.++-++ .....+++|+.|.|... .|-.++. +..-+|.|+.|++++.
T Consensus 313 GKL~~Levf~aan-N~LElVP----------------EglcRC~kL~kL~L~~N-rLiTLPe--aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 313 GKLIQLEVFHAAN-NKLELVP----------------EGLCRCVKLQKLKLDHN-RLITLPE--AIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhhhhHHHHhhc-cccccCc----------------hhhhhhHHHHHhccccc-ceeechh--hhhhcCCcceeeccCC
Confidence 4555666665555 3333222 11224566666666544 2333333 3333556666666666
Q ss_pred CCCcccc
Q 043332 873 PKLKRLS 879 (897)
Q Consensus 873 ~~L~~lp 879 (897)
|+|..-|
T Consensus 373 pnLVMPP 379 (1255)
T KOG0444|consen 373 PNLVMPP 379 (1255)
T ss_pred cCccCCC
Confidence 6665443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=7e-22 Score=247.24 Aligned_cols=371 Identities=16% Similarity=0.111 Sum_probs=196.1
Q ss_pred ccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC-cCCcccccC
Q 043332 490 PVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE-VLPSSVSDL 568 (897)
Q Consensus 490 p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l 568 (897)
|.......+++.|++++|.+....+..+.++++|++|++++|.....+|.. +.++++|++|+|++|.+. .+|..++.+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcC
Confidence 333334456677777776665433334456667777777766433344443 366677777777777665 566666777
Q ss_pred cccceeeccccccccCCc-chhccccCCEeeccCCcCc-ccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEec
Q 043332 569 TNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIE-EVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKL 646 (897)
Q Consensus 569 ~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 646 (897)
++|++|++++|.....+| .++++++|++|++++|.+. .+|..+.++++|++|++++|.+....+..+.++++|+.|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 777777777665555566 5667777777777766654 45666666777777777766655433333566667777766
Q ss_pred ccCchhhhhcHHHHHhhhcccceeEEEeccchh-hhhhhhccCCCCceeeEEEeccc--ccccccccccccccceeeecc
Q 043332 647 SFGREALRETVEEAARLSNRLDTFEGHFSTLKD-FNIYVKSTDGRGSKNYCLLLSAS--DMRGILITDLEVDKSVSLMNC 723 (897)
Q Consensus 647 ~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~~ 723 (897)
+ ++......+..+..+++ |+.|+++.|.+.. ++.... ...+|+.+.+..+.. ..+..+. ..+.+..+++.+|
T Consensus 316 ~-~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~--~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n 390 (968)
T PLN00113 316 F-SNNFTGKIPVALTSLPR-LQVLQLWSNKFSGEIPKNLG--KHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSN 390 (968)
T ss_pred C-CCccCCcCChhHhcCCC-CCEEECcCCCCcCcCChHHh--CCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCC
Confidence 6 33333344455666666 6666666665432 221111 122344444432211 1122211 2334455555555
Q ss_pred cccCCCCc-ccCccccceeEEeccCCcccccccCc-------------ccC-Cccc-cccccccccEEEEecCCCCCCCC
Q 043332 724 KICEREEP-IVLPEDVQFLQMFEVSDVASLNDVLP-------------REQ-GLVN-IGKFSHDLKVLSFVRCPNLKNLF 787 (897)
Q Consensus 724 ~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~-~l~~-~~~l~~~L~~L~l~~c~~l~~l~ 787 (897)
.+.+..+. +..+++|+.|.+.+|.-...+..... ... .++. ...++ +|+.|++++|...+.+|
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARNKFFGGLP 469 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC-CCcEEECcCceeeeecC
Confidence 54433332 34445555555554431110000000 000 0111 22344 55555555554433332
Q ss_pred hhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEE
Q 043332 788 SLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEI 867 (897)
Q Consensus 788 ~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L 867 (897)
... ..++|+.|++++|. +...+ +.....+++|+.|+|+++.-...++. ....+++|++|
T Consensus 470 ~~~---~~~~L~~L~ls~n~-l~~~~---------------~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L 528 (968)
T PLN00113 470 DSF---GSKRLENLDLSRNQ-FSGAV---------------PRKLGSLSELMQLKLSENKLSGEIPD--ELSSCKKLVSL 528 (968)
T ss_pred ccc---ccccceEEECcCCc-cCCcc---------------ChhhhhhhccCEEECcCCcceeeCCh--HHcCccCCCEE
Confidence 211 23455555555542 22111 11122578888999988854444443 33457889999
Q ss_pred EecCCCCCccccCCcccccCC
Q 043332 868 EVRGCPKLKRLSLSLPLLDNG 888 (897)
Q Consensus 868 ~i~~C~~L~~lp~~~~~l~~~ 888 (897)
++++|.-...+|..+..+.++
T Consensus 529 ~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 529 DLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred ECCCCcccccCChhHhCcccC
Confidence 999997766777776665554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.6e-22 Score=209.95 Aligned_cols=289 Identities=19% Similarity=0.196 Sum_probs=177.4
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCccccee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSL 574 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L 574 (897)
+...+.|++++|.+..+....|.++++|+.+.+.+| .++.+|... .-..+|+.|+|.+|.|+++- +++..++.||.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 345667888888887777667778888888888877 677777621 33345888888888877653 456777788888
Q ss_pred eccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCch
Q 043332 575 LLRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGRE 651 (897)
Q Consensus 575 ~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (897)
|||.| .+..+| ++..-.++++|+|++|.|+.+-.+ |..+.+|-+|.|+.|.++.+|...|++|++|+.|++.. +.
T Consensus 155 DLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~ 232 (873)
T KOG4194|consen 155 DLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NR 232 (873)
T ss_pred hhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cc
Confidence 88876 566666 477777788888888877776543 77777888888888888888877777788888887762 22
Q ss_pred hhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccc--cccccccccccccceeeecccccCC-
Q 043332 652 ALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASD--MRGILITDLEVDKSVSLMNCKICER- 728 (897)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~- 728 (897)
.....--.+..|.. |+.|.+..|++..+.... ...+.+++.+.+..+... -..|+. .+..|+.|+++.+.+...
T Consensus 233 irive~ltFqgL~S-l~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGA-FYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred eeeehhhhhcCchh-hhhhhhhhcCcccccCcc-eeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheee
Confidence 22221234555666 666666666655443321 112234455554443321 123333 666677777777776432
Q ss_pred CCcccCccccceeEEeccCCcccccccCcccCCccc--cccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEec
Q 043332 729 EEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN--IGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKV 805 (897)
Q Consensus 729 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~ 805 (897)
.....+.++|+.|+++.+. +. .++. +..+. .|+.|.|+.+. +..+ ..+.+..+++|+.|+++.
T Consensus 310 ~d~WsftqkL~~LdLs~N~-i~----------~l~~~sf~~L~-~Le~LnLs~Ns-i~~l-~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNR-IT----------RLDEGSFRVLS-QLEELNLSHNS-IDHL-AEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred cchhhhcccceeEeccccc-cc----------cCChhHHHHHH-Hhhhhcccccc-hHHH-HhhHHHHhhhhhhhcCcC
Confidence 2336677777777777664 22 1221 33444 55555555532 3222 222344455555555555
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=4.2e-21 Score=202.78 Aligned_cols=304 Identities=21% Similarity=0.197 Sum_probs=161.3
Q ss_pred CccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-ccccc
Q 043332 489 FPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSD 567 (897)
Q Consensus 489 ~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~ 567 (897)
+|.-.....++++|++.+|.|..+.+...+.++.||+|+|+.| .+..+|...|..-.++++|+|++|.|+.+- ..|.+
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence 4433333345666666666666555554555566666666666 555555555555556666666666665442 23555
Q ss_pred CcccceeeccccccccCCc--chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeE
Q 043332 568 LTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKL 644 (897)
Q Consensus 568 l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 644 (897)
+.+|.+|.|++| .++.+| .|.+|++|+.|+|..|.|+.. -..|..|.+|+.|.+..|.+..+..+.|..|.++++|
T Consensus 196 lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 196 LNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred cchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 556666666664 445555 355566666666666655433 1235555666666666666666555555566666666
Q ss_pred ecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccc-cccccccccccccceeeecc
Q 043332 645 KLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASD-MRGILITDLEVDKSVSLMNC 723 (897)
Q Consensus 645 ~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~-~~~~~~~~~~~l~~l~l~~~ 723 (897)
++. .+......-..+-+|+. |+.|++++|.++.+..... ....+|+.|.++.+... +.+.-...+..|+.|+|+++
T Consensus 275 ~L~-~N~l~~vn~g~lfgLt~-L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 275 NLE-TNRLQAVNEGWLFGLTS-LEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ecc-cchhhhhhcccccccch-hhhhccchhhhheeecchh-hhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 655 22222222334445555 6666666555543322110 01123444444333221 11111114456677777777
Q ss_pred cccCCCCc-ccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEE
Q 043332 724 KICEREEP-IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLE 802 (897)
Q Consensus 724 ~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~ 802 (897)
.+...... +..+++|+.|+++++.-.-.+.| .-..+..++ +|++|.+.++ +++.++.- -+..|+.||+|+
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IED------aa~~f~gl~-~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~Ld 422 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIED------AAVAFNGLP-SLRKLRLTGN-QLKSIPKR-AFSGLEALEHLD 422 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEec------chhhhccch-hhhheeecCc-eeeecchh-hhccCcccceec
Confidence 76443332 55667777777776642222211 111134466 7788888774 46666443 355677778877
Q ss_pred Eecc
Q 043332 803 VKVC 806 (897)
Q Consensus 803 l~~c 806 (897)
+.+.
T Consensus 423 L~~N 426 (873)
T KOG4194|consen 423 LGDN 426 (873)
T ss_pred CCCC
Confidence 7773
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=2.6e-18 Score=214.89 Aligned_cols=334 Identities=21% Similarity=0.245 Sum_probs=226.9
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCC-CCcCCcccccCccccee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTD-IEVLPSSVSDLTNLRSL 574 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~i~~l~~L~~L 574 (897)
+.+++.|.+.++.+..+|..+ .+.+|+.|++.+| .+..++..+ ..+++|++|+|+++. +..+|. ++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s-~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGS-KLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCc-ccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 457899999999999998765 5689999999998 677777765 789999999999876 677774 8889999999
Q ss_pred eccccccccCCc-chhccccCCEeeccCC-cCcccCccccCCCCCCEEeCCCCC-CCcCCCCcccCCcccCeEecccCch
Q 043332 575 LLRYCLRLRRVP-SVAKLLALHYLDLEAT-RIEEVPEGMEMLENLSYLYLYSLP-LKKFPTGILPRLRDLYKLKLSFGRE 651 (897)
Q Consensus 575 ~L~~~~~~~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (897)
+|++|..+..+| +++++++|++|++++| .++.+|..+ ++++|++|++++|. +..+|. ..++|+.|+++ ++.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~-~n~ 736 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLD-ETA 736 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecC-CCc
Confidence 999999999999 7999999999999998 788899877 78999999999986 445543 24578888887 222
Q ss_pred hhhhcHHHHHhhhcccceeEEEeccchhhhhhh------hccCCCCceeeEEEecc--cccccccccccccccceeeecc
Q 043332 652 ALRETVEEAARLSNRLDTFEGHFSTLKDFNIYV------KSTDGRGSKNYCLLLSA--SDMRGILITDLEVDKSVSLMNC 723 (897)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~------~~~~~~~L~~l~~~~~~--~~~~~~~~~~~~~l~~l~l~~~ 723 (897)
.. ..+. ...+++ |+.|.+..+....+.... ......+|+.|.+.... ...|..+. .++.|+.|++++|
T Consensus 737 i~-~lP~-~~~l~~-L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C 812 (1153)
T PLN03210 737 IE-EFPS-NLRLEN-LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENC 812 (1153)
T ss_pred cc-cccc-cccccc-cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCC
Confidence 21 1111 124556 777766543221111100 00112346666554321 12444444 7788999999998
Q ss_pred cccCCCCcccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEE
Q 043332 724 KICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEV 803 (897)
Q Consensus 724 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l 803 (897)
...+..+....+++|+.|.+++|..+..+. . ..+ +|+.|+|+++ .++.+|. .+..+++|+.|++
T Consensus 813 ~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p----------~--~~~-nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L 876 (1153)
T PLN03210 813 INLETLPTGINLESLESLDLSGCSRLRTFP----------D--IST-NISDLNLSRT-GIEEVPW--WIEKFSNLSFLDM 876 (1153)
T ss_pred CCcCeeCCCCCccccCEEECCCCCcccccc----------c--ccc-ccCEeECCCC-CCccChH--HHhcCCCCCEEEC
Confidence 766665554468899999999997655322 1 123 7778887775 3555543 2556778888888
Q ss_pred eccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCC-----------cccCCCccEEEecCC
Q 043332 804 KVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNG-----------VLVCNSLQEIEVRGC 872 (897)
Q Consensus 804 ~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~-----------~~~~p~L~~L~i~~C 872 (897)
++|++++.+.. ....+++|+.|.+.+|++|+.+..... ...+|+...+.+.+|
T Consensus 877 ~~C~~L~~l~~----------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 877 NGCNNLQRVSL----------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC 940 (1153)
T ss_pred CCCCCcCccCc----------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence 88877776542 112467777778888877775543110 112445556667777
Q ss_pred CCCc
Q 043332 873 PKLK 876 (897)
Q Consensus 873 ~~L~ 876 (897)
.+|.
T Consensus 941 ~~L~ 944 (1153)
T PLN03210 941 FNLD 944 (1153)
T ss_pred cCCC
Confidence 6665
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=2e-20 Score=198.56 Aligned_cols=336 Identities=20% Similarity=0.264 Sum_probs=231.0
Q ss_pred CCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC--cCCcc
Q 043332 487 QEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE--VLPSS 564 (897)
Q Consensus 487 ~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~ 564 (897)
..+|........++.|-+....+..+|... +.|.+|+.|.+.+| .+..+... ++.++.||.+++.+|++. .+|..
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN-~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHN-QLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhh-hhHhhhhh-hccchhhHHHhhhccccccCCCCch
Confidence 346666556667777888777777777654 57788888888888 44444444 367888888888888865 67888
Q ss_pred cccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccC
Q 043332 565 VSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLY 642 (897)
Q Consensus 565 i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 642 (897)
|..+..|..||||.| .+++.| .+..-+++-+|+|++|+|+.+|.. +-+|+.|-.|++++|.+..+|+.+ .+|..||
T Consensus 99 iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-HHHhhhh
Confidence 888888888888886 678888 688888888888888888888876 668888888888888888888874 8888888
Q ss_pred eEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeec
Q 043332 643 KLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMN 722 (897)
Q Consensus 643 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~ 722 (897)
+|.++ ++......+..+..++. |..|.++...-.. .++|..+. ++.+|..++++.
T Consensus 177 tL~Ls-~NPL~hfQLrQLPsmts-L~vLhms~TqRTl----------------------~N~Ptsld-~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 177 TLKLS-NNPLNHFQLRQLPSMTS-LSVLHMSNTQRTL----------------------DNIPTSLD-DLHNLRDVDLSE 231 (1255)
T ss_pred hhhcC-CChhhHHHHhcCccchh-hhhhhcccccchh----------------------hcCCCchh-hhhhhhhccccc
Confidence 88888 44444444555556666 6666665433211 12333333 566677788887
Q ss_pred ccccCCCCcccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEE
Q 043332 723 CKICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLE 802 (897)
Q Consensus 723 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~ 802 (897)
+.+.....-+-.+++|+.|+++++. ++.+. ...+.-. +|.+|+++.+ .++.+|.. +..|+.|+.|+
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~-iteL~---------~~~~~W~-~lEtLNlSrN-QLt~LP~a--vcKL~kL~kLy 297 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNK-ITELN---------MTEGEWE-NLETLNLSRN-QLTVLPDA--VCKLTKLTKLY 297 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCc-eeeee---------ccHHHHh-hhhhhccccc-hhccchHH--HhhhHHHHHHH
Confidence 7665444446677889999998875 22111 0122233 8888999885 46776544 55788888888
Q ss_pred Eeccccch--hhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCCccccC
Q 043332 803 VKVCFSIE--EIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLKRLSL 880 (897)
Q Consensus 803 l~~c~~l~--~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 880 (897)
+.+. ++. .|+ +....+-+|+.+...+. +|+-.+. +...|+.|++|.+.. ..|-.+|.
T Consensus 298 ~n~N-kL~FeGiP----------------SGIGKL~~Levf~aanN-~LElVPE--glcRC~kL~kL~L~~-NrLiTLPe 356 (1255)
T KOG0444|consen 298 ANNN-KLTFEGIP----------------SGIGKLIQLEVFHAANN-KLELVPE--GLCRCVKLQKLKLDH-NRLITLPE 356 (1255)
T ss_pred hccC-cccccCCc----------------cchhhhhhhHHHHhhcc-ccccCch--hhhhhHHHHHhcccc-cceeechh
Confidence 7773 332 111 12224566777777665 4665555 777799999999865 47778998
Q ss_pred CcccccC
Q 043332 881 SLPLLDN 887 (897)
Q Consensus 881 ~~~~l~~ 887 (897)
+|..|..
T Consensus 357 aIHlL~~ 363 (1255)
T KOG0444|consen 357 AIHLLPD 363 (1255)
T ss_pred hhhhcCC
Confidence 8766654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=3.5e-20 Score=187.72 Aligned_cols=191 Identities=23% Similarity=0.319 Sum_probs=144.9
Q ss_pred CcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc
Q 043332 485 RLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS 564 (897)
Q Consensus 485 ~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~ 564 (897)
.+.++|........+.+++.++|++..+|... .....++.+++++| .+..+++++ +.+..|..|+..+|++.++|..
T Consensus 79 ~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~n-~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 79 KLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSSN-ELKELPDSI-GRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred hhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhcccc-ceeecCchH-HHHhhhhhhhccccccccCchH
Confidence 34456666555667788888888888888755 36678888888888 666777775 6777888888888889999988
Q ss_pred cccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCe
Q 043332 565 VSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYK 643 (897)
Q Consensus 565 i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 643 (897)
++++..|..|++.+| .++.+| ..-+++.|++||...|-++.+|+.++.|.+|..|++..|++..+|. |+.+..|.+
T Consensus 156 ~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~E 232 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKE 232 (565)
T ss_pred HHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHH
Confidence 888988988998886 556666 5555888999998888888899999999999999999888888883 688888888
Q ss_pred EecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhh
Q 043332 644 LKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIY 683 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~ 683 (897)
|+++ .+.......+...++.. +..|++..|.+..++..
T Consensus 233 lh~g-~N~i~~lpae~~~~L~~-l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 233 LHVG-ENQIEMLPAEHLKHLNS-LLVLDLRDNKLKEVPDE 270 (565)
T ss_pred HHhc-ccHHHhhHHHHhccccc-ceeeeccccccccCchH
Confidence 8877 23332222233446777 88888888777766553
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=4.8e-19 Score=179.54 Aligned_cols=345 Identities=20% Similarity=0.224 Sum_probs=177.7
Q ss_pred CCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccc
Q 043332 487 QEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVS 566 (897)
Q Consensus 487 ~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 566 (897)
..+|.......++..+.+.+|.+..+|+.... ++.|..|++..| .++.+|+.+ +.+.+|..|+|..|+|..+| +|.
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-~L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-ef~ 225 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN-LLETLPPEL-GGLESLELLYLRRNKIRFLP-EFP 225 (565)
T ss_pred ccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh-hhhcCChhh-cchhhhHHHHhhhcccccCC-CCC
Confidence 34444444444555566666666666655443 666666666666 566666664 66666666666666666666 566
Q ss_pred cCcccceeeccccccccCCc-c-hhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeE
Q 043332 567 DLTNLRSLLLRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKL 644 (897)
Q Consensus 567 ~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 644 (897)
++..|..|.+..| .++.+| . ..++.+|.+||++.|+++++|.+++.|++|.+||+++|.++.+|.+ +|+| +|+.|
T Consensus 226 gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L 302 (565)
T KOG0472|consen 226 GCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFL 302 (565)
T ss_pred ccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eeeeh
Confidence 6666666666664 555666 3 3366667777777777777777777677777777777667666666 4666 66666
Q ss_pred ecccCchh-----------hhhcHH------------------------------HHHhhhcccceeEEEeccchhhhhh
Q 043332 645 KLSFGREA-----------LRETVE------------------------------EAARLSNRLDTFEGHFSTLKDFNIY 683 (897)
Q Consensus 645 ~l~~~~~~-----------~~~~~~------------------------------~l~~l~~~L~~L~l~~~~l~~~~~~ 683 (897)
.+.. +.. +...++ ....+.+ .+.|+++.-.++.++..
T Consensus 303 ~leG-NPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~-tkiL~~s~~qlt~VPdE 380 (565)
T KOG0472|consen 303 ALEG-NPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT-TKILDVSDKQLTLVPDE 380 (565)
T ss_pred hhcC-CchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh-hhhhcccccccccCCHH
Confidence 5541 111 000011 1112222 33333333333322222
Q ss_pred hhccCCCCc-eeeEEEecc-cccccccccccccccceeeecccccCCCCcccCccccceeEEeccCCcccccccCcccCC
Q 043332 684 VKSTDGRGS-KNYCLLLSA-SDMRGILITDLEVDKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQG 761 (897)
Q Consensus 684 ~~~~~~~~L-~~l~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 761 (897)
+........ ..-.+.-+. ++.|..+..--.....+.++++.+......+..+++|..|+++++. ...
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-----------Ln~ 449 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-----------LND 449 (565)
T ss_pred HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-----------hhh
Confidence 111100000 000000000 0111111100001112233444443333346777888888888775 233
Q ss_pred ccc-cccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccce
Q 043332 762 LVN-IGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKR 840 (897)
Q Consensus 762 l~~-~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~ 840 (897)
+|. .+.+- .|+.|+|+.+. ...+|.. +-.+.-||.+-.++ +++.++... ....+.+|..
T Consensus 450 LP~e~~~lv-~Lq~LnlS~Nr-Fr~lP~~--~y~lq~lEtllas~-nqi~~vd~~---------------~l~nm~nL~t 509 (565)
T KOG0472|consen 450 LPEEMGSLV-RLQTLNLSFNR-FRMLPEC--LYELQTLETLLASN-NQIGSVDPS---------------GLKNMRNLTT 509 (565)
T ss_pred cchhhhhhh-hhheecccccc-cccchHH--HhhHHHHHHHHhcc-ccccccChH---------------Hhhhhhhcce
Confidence 443 55565 78888888863 3333322 11122333333333 444444211 1235778888
Q ss_pred eecccCcccccccCCCCcccCCCccEEEecCCCC
Q 043332 841 LGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPK 874 (897)
Q Consensus 841 L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~ 874 (897)
|+|.+. .+..++..-+.+ .+|++|+++|.|-
T Consensus 510 LDL~nN-dlq~IPp~Lgnm--tnL~hLeL~gNpf 540 (565)
T KOG0472|consen 510 LDLQNN-DLQQIPPILGNM--TNLRHLELDGNPF 540 (565)
T ss_pred eccCCC-chhhCChhhccc--cceeEEEecCCcc
Confidence 888776 466666666664 4788888888764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=4.6e-17 Score=182.02 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=72.0
Q ss_pred cCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccc---cchhhhhhhcc---ccccc
Q 043332 759 EQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVE---DEETEKELATN---TIINT 832 (897)
Q Consensus 759 ~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~---~~~~~~~~~~~---~~~~~ 832 (897)
..|+|.+..|. +|+.|+|+++. +..+ |...+.++..|++|++++ ++++.+..-- .........++ +-++.
T Consensus 373 d~c~p~l~~~~-hLKVLhLsyNr-L~~f-pas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 373 DSCFPVLVNFK-HLKVLHLSYNR-LNSF-PASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred ccchhhhcccc-ceeeeeecccc-cccC-CHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence 45677788898 99999999964 5554 556788999999999999 6777765211 01111111110 00122
Q ss_pred cccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCC
Q 043332 833 VTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKL 875 (897)
Q Consensus 833 ~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L 875 (897)
..+|.|+.++++.. +|+.+.... ..+.|.|++|+++|.+.+
T Consensus 449 ~~l~qL~~lDlS~N-~L~~~~l~~-~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCN-NLSEVTLPE-ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhcCcceEEecccc-hhhhhhhhh-hCCCcccceeeccCCccc
Confidence 35567888888654 576665532 234589999999999854
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.9e-16 Score=140.37 Aligned_cols=147 Identities=24% Similarity=0.376 Sum_probs=95.6
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
+++++|.+++|.++.+|+.+ ..+.+|++|++++| .++.+|..+ ++++.||.|+++-|.+..+|..++.++-|+.|||
T Consensus 33 s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nn-qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNN-QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcH-HHhhhhhhhhcccc-hhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 45666777777777666654 45666677776666 666666654 6666677777766666666666777777777776
Q ss_pred cccccc-cCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 577 RYCLRL-RRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 577 ~~~~~~-~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
++|+.- ..+| .|..+..|+.|.++.|.++-+|..+++|++|+.|.+..|.+-++|.++ +.|+.|++|.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkei-g~lt~lrelhiq 181 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEI-GDLTRLRELHIQ 181 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHH-HHHHHHHHHhcc
Confidence 665422 2455 466666666666666666666666666666666666666666666653 666666666655
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3.2e-16 Score=140.92 Aligned_cols=159 Identities=28% Similarity=0.386 Sum_probs=131.0
Q ss_pred CCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCEe
Q 043332 519 HCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYL 597 (897)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L 597 (897)
++.+++.|-+++| .+..+|+.+ ..+++|++|++++|.|+.+|.+|+.+++|+.|++.-| .+..+| .|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 5677888888888 777888876 7888999999999999999999999999999998875 667778 79999999999
Q ss_pred eccCCcCc--ccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEec
Q 043332 598 DLEATRIE--EVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFS 675 (897)
Q Consensus 598 ~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 675 (897)
|+..|++. .+|-.|-.++.|+.|+++.|.+.-+|+.+ ++|++||.|.+. .+.....+++++.++. |++|++..|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lr--dndll~lpkeig~lt~-lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLR--DNDLLSLPKEIGDLTR-LRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeec--cCchhhCcHHHHHHHH-HHHHhcccc
Confidence 99888775 48888888888999999999888888885 899999998887 3344556788888888 999998888
Q ss_pred cchhhhhhh
Q 043332 676 TLKDFNIYV 684 (897)
Q Consensus 676 ~l~~~~~~~ 684 (897)
.+..++..+
T Consensus 184 rl~vlppel 192 (264)
T KOG0617|consen 184 RLTVLPPEL 192 (264)
T ss_pred eeeecChhh
Confidence 877665543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=5.1e-14 Score=163.42 Aligned_cols=253 Identities=18% Similarity=0.162 Sum_probs=136.2
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeecccc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYC 579 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 579 (897)
..|+++.+.++.+|..+. ++|+.|.+.+| .+..+|. .+++|++|++++|.++.+|.. ..+|+.|++++|
T Consensus 204 ~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCCcCCcchh---cCCCEEEccCC-cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 345666666666665432 35666666666 5555553 245677777777777666642 346666677665
Q ss_pred ccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHH
Q 043332 580 LRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEE 659 (897)
Q Consensus 580 ~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 659 (897)
.++.+|. -+.+|+.|++++|+++.+|.. +++|+.|++++|.+..+|.. . .+|+.|+++ ++... .
T Consensus 273 -~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-p---~~L~~L~Ls-~N~L~-----~ 336 (788)
T PRK15387 273 -PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-P---SELCKLWAY-NNQLT-----S 336 (788)
T ss_pred -chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-c---ccccccccc-cCccc-----c
Confidence 3455553 124566677777776666653 35567777777766666542 1 234455554 12111 1
Q ss_pred HHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccccc
Q 043332 660 AARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPEDVQ 739 (897)
Q Consensus 660 l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~L~ 739 (897)
+..++..|+.|+++.|.+..++.. .+.+..|.++++.+.. .+. .+.+|+
T Consensus 337 LP~lp~~Lq~LdLS~N~Ls~LP~l----------------------------p~~L~~L~Ls~N~L~~-LP~--l~~~L~ 385 (788)
T PRK15387 337 LPTLPSGLQELSVSDNQLASLPTL----------------------------PSELYKLWAYNNRLTS-LPA--LPSGLK 385 (788)
T ss_pred ccccccccceEecCCCccCCCCCC----------------------------Ccccceehhhcccccc-Ccc--cccccc
Confidence 111222266666666655433221 0113334444444432 111 235677
Q ss_pred eeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccch
Q 043332 740 FLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEE 819 (897)
Q Consensus 740 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~ 819 (897)
.|+++++. ...+|.. .+ +|+.|++++|. +..+|.. ..+|+.|++++ ++++.++.
T Consensus 386 ~LdLs~N~-----------Lt~LP~l--~s-~L~~LdLS~N~-LssIP~l-----~~~L~~L~Ls~-NqLt~LP~----- 439 (788)
T PRK15387 386 ELIVSGNR-----------LTSLPVL--PS-ELKELMVSGNR-LTSLPML-----PSGLLSLSVYR-NQLTRLPE----- 439 (788)
T ss_pred eEEecCCc-----------ccCCCCc--cc-CCCEEEccCCc-CCCCCcc-----hhhhhhhhhcc-CcccccCh-----
Confidence 77777664 2223321 23 78888888864 5555432 23567777777 45555431
Q ss_pred hhhhhhccccccccccCccceeecccCc
Q 043332 820 TEKELATNTIINTVTLPRLKRLGFYFLP 847 (897)
Q Consensus 820 ~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 847 (897)
....+++|+.|+|++++
T Consensus 440 -----------sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 440 -----------SLIHLSSETTVNLEGNP 456 (788)
T ss_pred -----------HHhhccCCCeEECCCCC
Confidence 12246778888887775
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=5e-16 Score=173.79 Aligned_cols=88 Identities=25% Similarity=0.408 Sum_probs=60.1
Q ss_pred CCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccc
Q 043332 487 QEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVS 566 (897)
Q Consensus 487 ~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 566 (897)
..+|.......+++.+.++.|.+...|.. ..++++|+.++|.+| .+..+|.++ ..+++|.+|+++.|.+..+|..+.
T Consensus 58 ~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~-~~lknl~~LdlS~N~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 58 SSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASI-SELKNLQYLDLSFNHFGPIPLVIE 134 (1081)
T ss_pred ccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhH-HhhhcccccccchhccCCCchhHH
Confidence 34555544556778888888888887743 357788888888877 677777775 778888888888888776665444
Q ss_pred cCcccceeecc
Q 043332 567 DLTNLRSLLLR 577 (897)
Q Consensus 567 ~l~~L~~L~L~ 577 (897)
.+..+..++.+
T Consensus 135 ~lt~~~~~~~s 145 (1081)
T KOG0618|consen 135 VLTAEEELAAS 145 (1081)
T ss_pred hhhHHHHHhhh
Confidence 44433333333
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=4e-13 Score=156.08 Aligned_cols=245 Identities=20% Similarity=0.195 Sum_probs=168.4
Q ss_pred CCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc
Q 043332 484 LRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS 563 (897)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 563 (897)
..+..+|... ..+++.|++.+|+++.+|. .+++|++|++++| .+..+|. ..++|+.|++++|.++.+|.
T Consensus 211 ~~LtsLP~~l--~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~ 279 (788)
T PRK15387 211 SGLTTLPDCL--PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHLPA 279 (788)
T ss_pred CCCCcCCcch--hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccC----cccccceeeccCCchhhhhh
Confidence 3556677643 3579999999999999875 3579999999998 7778875 24689999999999998886
Q ss_pred ccccCcccceeeccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCe
Q 043332 564 SVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYK 643 (897)
Q Consensus 564 ~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 643 (897)
.. .+|+.|++++| .++.+|. .+++|++|++++|.+..+|... .+|+.|++++|.+..+|.. ..+|++
T Consensus 280 lp---~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l----p~~Lq~ 346 (788)
T PRK15387 280 LP---SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL----PSGLQE 346 (788)
T ss_pred ch---hhcCEEECcCC-ccccccc--cccccceeECCCCccccCCCCc---ccccccccccCcccccccc----ccccce
Confidence 33 56888999997 5777874 2468999999999999888643 4577888999999888742 257899
Q ss_pred EecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecc
Q 043332 644 LKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNC 723 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 723 (897)
|+++ ++..... +. ...+ |+.|+++.|.+..++.. ...|+.+++++|
T Consensus 347 LdLS-~N~Ls~L-P~---lp~~-L~~L~Ls~N~L~~LP~l----------------------------~~~L~~LdLs~N 392 (788)
T PRK15387 347 LSVS-DNQLASL-PT---LPSE-LYKLWAYNNRLTSLPAL----------------------------PSGLKELIVSGN 392 (788)
T ss_pred EecC-CCccCCC-CC---CCcc-cceehhhccccccCccc----------------------------ccccceEEecCC
Confidence 9998 3333221 11 1133 77777777766543321 123455666666
Q ss_pred cccCCCCcccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEE
Q 043332 724 KICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEV 803 (897)
Q Consensus 724 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l 803 (897)
.+... + ..+++|+.|+++++. +..+|. ++.+|+.|+++++. ++.+|.. +.++++|+.|++
T Consensus 393 ~Lt~L-P--~l~s~L~~LdLS~N~-----------LssIP~---l~~~L~~L~Ls~Nq-Lt~LP~s--l~~L~~L~~LdL 452 (788)
T PRK15387 393 RLTSL-P--VLPSELKELMVSGNR-----------LTSLPM---LPSGLLSLSVYRNQ-LTRLPES--LIHLSSETTVNL 452 (788)
T ss_pred cccCC-C--CcccCCCEEEccCCc-----------CCCCCc---chhhhhhhhhccCc-ccccChH--HhhccCCCeEEC
Confidence 65432 2 124678888888775 222332 22378888888754 5666543 557788888888
Q ss_pred ecc
Q 043332 804 KVC 806 (897)
Q Consensus 804 ~~c 806 (897)
+++
T Consensus 453 s~N 455 (788)
T PRK15387 453 EGN 455 (788)
T ss_pred CCC
Confidence 885
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.45 E-value=7.4e-14 Score=165.82 Aligned_cols=105 Identities=30% Similarity=0.396 Sum_probs=95.2
Q ss_pred cccEEEccccc--cccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceee
Q 043332 498 NLERVSLMKNN--IKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 498 ~l~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 575 (897)
+++.|-+..|. +..++..+|..++.|++|++++|..+..+|..+ +.+-+||||+++++.++.+|.++++|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 68888888885 778888888999999999999999999999986 899999999999999999999999999999999
Q ss_pred ccccccccCCcc-hhccccCCEeeccCCc
Q 043332 576 LRYCLRLRRVPS-VAKLLALHYLDLEATR 603 (897)
Q Consensus 576 L~~~~~~~~lp~-~~~l~~L~~L~l~~~~ 603 (897)
+..+..+..+|. ...|++|++|.+....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccc
Confidence 999888888884 6669999999997764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=7.1e-13 Score=155.10 Aligned_cols=132 Identities=24% Similarity=0.482 Sum_probs=71.7
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccc
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 578 (897)
...|.+.++.++.+|... .+.|+.|++++| .+..+|..++ ++|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACI---PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCccc---ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 445555555555555432 135666666665 5555655442 356666666666666655432 3566666666
Q ss_pred cccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 579 CLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 579 ~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
| .+..+| .+. .+|++|++++|++..+|..+. .+|++|++++|.++.+|..+ . ++|+.|+++
T Consensus 251 N-~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l-p--~sL~~L~Ls 312 (754)
T PRK15370 251 N-RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL-P--SGITHLNVQ 312 (754)
T ss_pred C-ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc-h--hhHHHHHhc
Confidence 5 344555 332 356666666666666665443 35666666666666555432 1 244455554
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.2e-11 Score=152.05 Aligned_cols=289 Identities=16% Similarity=0.199 Sum_probs=178.6
Q ss_pred ccccchhhHHHHHHHHHHhcC-CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~ 216 (897)
..+|-| . +|.+.|.. ...+++.|.|++|.||||++.++.+.. . .++|+++.. ..++..+...++.
T Consensus 14 ~~~~~R--~----rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 14 HNTVVR--E----RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred cccCcc--h----HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHH
Confidence 456777 3 34444443 357899999999999999999988642 2 589999864 4466777777777
Q ss_pred HHcCCCCCC-------------hhHHHHHHHHHHHHhc-cCeEEEEEcCCCcccc--cc-ccccCCCCCCCCcEEEEEeC
Q 043332 217 ALNQSLPEN-------------EDEVRRAGRLSGMLKA-KAKFVLILDDMWKEFR--LE-EVGIPEPSEENGCKLVITTR 279 (897)
Q Consensus 217 ~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~--~~-~~~~~~~~~~~gs~iivTTR 279 (897)
.++...... .+.......+...+.. +.+++||+||+..... .. .+...+.....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 774221110 1112233444444433 6789999999965321 11 22211222245668889999
Q ss_pred Cchhhcc--c--ccceEecc----CCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCC
Q 043332 280 SLGVCRF--M--DCKEIGVE----LLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDE 351 (897)
Q Consensus 280 ~~~v~~~--~--~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~ 351 (897)
...-... . ......+. +|+.+|+.++|....+... ..+.+.+|.+.|+|.|+++..++..++....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 8432111 1 11114454 9999999999987655432 1455778999999999999999887754321
Q ss_pred hhHHHHHHHHHhhccccCCCchhhhhhhhhh-hccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhh
Q 043332 352 IHEWRNALNELRGLVRSRNGVNADVLGRLEF-SYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQ 430 (897)
Q Consensus 352 ~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 430 (897)
. .......+.. .....+...+.- .|+.|| +..+..++..|+++ . ++.+ +.. .+.
T Consensus 235 ~--~~~~~~~~~~------~~~~~~~~~l~~~v~~~l~-~~~~~~l~~~a~~~-~--~~~~-l~~-----~l~------- 289 (903)
T PRK04841 235 S--LHDSARRLAG------INASHLSDYLVEEVLDNVD-LETRHFLLRCSVLR-S--MNDA-LIV-----RVT------- 289 (903)
T ss_pred c--hhhhhHhhcC------CCchhHHHHHHHHHHhcCC-HHHHHHHHHhcccc-c--CCHH-HHH-----HHc-------
Confidence 0 0111111110 011234444333 478999 78999999999987 2 3322 221 111
Q ss_pred hHHhHHHHHHHHHHHcccccc-cc-CCCeEEehHHHHHHHHhhh
Q 043332 431 AKNDRGHTILNRLVNCCLLES-AK-DGRCVKMHDLIRDMALSIT 472 (897)
Q Consensus 431 ~~~~~~~~~~~~L~~~~ll~~-~~-~~~~~~mHdlv~d~a~~~~ 472 (897)
..+.+...+++|...+++.. .+ ++.+|+.|++++++.+...
T Consensus 290 -~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 290 -GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 12345678999999998654 33 3468999999999998765
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=1.5e-12 Score=152.46 Aligned_cols=171 Identities=20% Similarity=0.301 Sum_probs=129.0
Q ss_pred CcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc
Q 043332 485 RLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS 564 (897)
Q Consensus 485 ~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~ 564 (897)
.+..+|.. .+..++.|++++|.++.+|...+ .+|++|++++| .+..+|..+. .+|+.|+|++|.+..+|..
T Consensus 189 ~LtsLP~~--Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~ 259 (754)
T PRK15370 189 GLTTIPAC--IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP---DTIQEMELSINRITELPER 259 (754)
T ss_pred CcCcCCcc--cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh---ccccEEECcCCccCcCChh
Confidence 44566654 34679999999999999987653 58999999998 6888887653 4799999999999999987
Q ss_pred cccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCe
Q 043332 565 VSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYK 643 (897)
Q Consensus 565 i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 643 (897)
+. .+|++|++++| .++.+| .+. .+|++|++++|+++.+|..+. .+|++|++++|.+..+|... .++|+.
T Consensus 260 l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~~ 329 (754)
T PRK15370 260 LP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL---PPGLKT 329 (754)
T ss_pred Hh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc---ccccee
Confidence 64 58999999986 667788 454 589999999999999987664 57999999999999888654 257888
Q ss_pred EecccCchhhhhcHHHHHhhhcccceeEEEeccchh
Q 043332 644 LKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
|+++. +.... .+..+. ++ |+.|+++.|.+..
T Consensus 330 L~Ls~-N~Lt~-LP~~l~--~s-L~~L~Ls~N~L~~ 360 (754)
T PRK15370 330 LEAGE-NALTS-LPASLP--PE-LQVLDVSKNQITV 360 (754)
T ss_pred ccccC-Ccccc-CChhhc--Cc-ccEEECCCCCCCc
Confidence 88772 22221 112221 34 7777777665543
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=5.7e-13 Score=135.90 Aligned_cols=144 Identities=25% Similarity=0.289 Sum_probs=120.7
Q ss_pred eeecCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecC-CC
Q 043332 479 MAKAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSH-TD 557 (897)
Q Consensus 479 ~~~~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~ 557 (897)
+...+..+.++|.+ .+.....|.|..|.|+.+|+..|..+++||.|+|++| .+..|.+..|++++.|-.|-+-+ |+
T Consensus 51 VdCr~~GL~eVP~~--LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN--LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCccc--CCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc
Confidence 33456678888876 5678899999999999999999999999999999999 88899888899999887775555 88
Q ss_pred CCcCCcc-cccCcccceeeccccccccCCc--chhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCC
Q 043332 558 IEVLPSS-VSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLP 626 (897)
Q Consensus 558 i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 626 (897)
|+.+|.. |++|..|+.|.+.-| .+..++ .+..|++|..|.+..|.++.++. .+..+..++++.+..|.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9999875 788999999999886 455555 59999999999999999888887 48888888888876554
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.1e-13 Score=140.97 Aligned_cols=283 Identities=20% Similarity=0.236 Sum_probs=183.3
Q ss_pred ccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeeccccccc
Q 043332 504 LMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRYCLRL 582 (897)
Q Consensus 504 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~ 582 (897)
-++.+++++|...- +....+.|..| .+..+|+..|+.+++||.|||+.|.|+.+ |..|.++..|-.|-+.+++++
T Consensus 53 Cr~~GL~eVP~~LP---~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 53 CRGKGLTEVPANLP---PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ccCCCcccCcccCC---CcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 34556778876543 35677889988 89999999999999999999999999976 788999999999998887899
Q ss_pred cCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchh----hhh
Q 043332 583 RRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREA----LRE 655 (897)
Q Consensus 583 ~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~ 655 (897)
+++| .|.+|..|+.|.+.-|.+..++.. +..|++|..|.+..|.+..++.+.+..+.+++++.+..+... ..+
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 9999 499999999999999988877654 899999999999999999999888899999999987732211 111
Q ss_pred cHHHHHhhhcc------cceeEEEeccchhhhhhhhccCCCCceeeEEEeccccccccc-----ccccccccceeeeccc
Q 043332 656 TVEEAARLSNR------LDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGIL-----ITDLEVDKSVSLMNCK 724 (897)
Q Consensus 656 ~~~~l~~l~~~------L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~ 724 (897)
.-..++..+.- ..-..+..+.....+... ....++.+.-...+.+++... ...+++|+.++|+++.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k---f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARK---FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhh---hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 11111111000 000000000000000000 000011111111122222221 2256778888888888
Q ss_pred ccCCCCc-ccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEE
Q 043332 725 ICEREEP-IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEV 803 (897)
Q Consensus 725 ~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l 803 (897)
+....+. +.....++.|.+..+. +..+. -..+..+. .|+.|+|.++. ++.+.| +.+..+.+|..|++
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~--------~~~f~~ls-~L~tL~L~~N~-it~~~~-~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNK-LEFVS--------SGMFQGLS-GLKTLSLYDNQ-ITTVAP-GAFQTLFSLSTLNL 353 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcch-HHHHH--------HHhhhccc-cceeeeecCCe-eEEEec-ccccccceeeeeeh
Confidence 7654433 6667778888777664 11110 00144556 88889998854 555533 34666777888777
Q ss_pred ec
Q 043332 804 KV 805 (897)
Q Consensus 804 ~~ 805 (897)
-.
T Consensus 354 ~~ 355 (498)
T KOG4237|consen 354 LS 355 (498)
T ss_pred cc
Confidence 53
No 25
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.25 E-value=1.2e-09 Score=123.42 Aligned_cols=293 Identities=18% Similarity=0.252 Sum_probs=191.1
Q ss_pred cccccchhhHHHHHHHHHHhcCC-CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMGD-KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIA 215 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~ 215 (897)
+...|-| .++++.|... +.+.+.|..++|.|||||+.+.+... ..-..+.|.+.++ +.++..+...++
T Consensus 18 ~~~~v~R------~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 18 PDNYVVR------PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred ccccccc------HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHH
Confidence 3455666 3466666554 78999999999999999999998732 3445699999875 456888999999
Q ss_pred HHHcCCCCCChhHHH-------------HHHHHHHHHhc-cCeEEEEEcCCCc---cccccccccCCCCCCCCcEEEEEe
Q 043332 216 AALNQSLPENEDEVR-------------RAGRLSGMLKA-KAKFVLILDDMWK---EFRLEEVGIPEPSEENGCKLVITT 278 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~-------------~~~~l~~~l~~-~~r~LlVlDdv~~---~~~~~~~~~~~~~~~~gs~iivTT 278 (897)
..++...+...+..+ ....+...+.+ .++..+||||..- ...-..+...+.....+-..||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 988765544333322 34444444432 4578999999753 222222322233344677899999
Q ss_pred CCchhhccc--ccce--Eec----cCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCC
Q 043332 279 RSLGVCRFM--DCKE--IGV----ELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVD 350 (897)
Q Consensus 279 R~~~v~~~~--~~~~--~~l----~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~ 350 (897)
|+..-.... .... +++ =.++.+|+-++|....+...+ +..++.+.+..+|-+-|+..++-.++.+.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld------~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD------AADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC------hHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 986543221 1111 233 248899999999776543322 45577899999999999999998888444
Q ss_pred ChhHHHHHHHHHhhccccCCCchhhhhh-hhhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhh
Q 043332 351 EIHEWRNALNELRGLVRSRNGVNADVLG-RLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDV 429 (897)
Q Consensus 351 ~~~~w~~~l~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 429 (897)
+.+.--..+. +....+.. ...--++.|| +.+|..++-||+++.= -..|. +.
T Consensus 242 ~~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp-~~l~~FLl~~svl~~f----~~eL~-------------~~ 293 (894)
T COG2909 242 SAEQSLRGLS----------GAASHLSDYLVEEVLDRLP-PELRDFLLQTSVLSRF----NDELC-------------NA 293 (894)
T ss_pred cHHHHhhhcc----------chHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHHHh----hHHHH-------------HH
Confidence 3332221111 11111111 1223468898 7899999999987542 11222 22
Q ss_pred hhHHhHHHHHHHHHHHccccccc--cCCCeEEehHHHHHHHHhhhcC
Q 043332 430 QAKNDRGHTILNRLVNCCLLESA--KDGRCVKMHDLIRDMALSITSE 474 (897)
Q Consensus 430 ~~~~~~~~~~~~~L~~~~ll~~~--~~~~~~~mHdlv~d~a~~~~~~ 474 (897)
-+.++.+...+++|.+++|+-.. +++.+|+.|.+..||-+.....
T Consensus 294 Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 294 LTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 34456778899999999987643 4568999999999999876654
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.14 E-value=7.6e-09 Score=109.28 Aligned_cols=181 Identities=15% Similarity=0.195 Sum_probs=112.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHH---
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLS--- 236 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--- 236 (897)
....++.|+|++|+||||+++.+++.... ..+ .+.|+. ....+..+++..|+..++..... .+.......+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~--~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQ--ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCC--CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 34568999999999999999999998631 111 223333 33457778899999888765432 22222222332
Q ss_pred -HHHhccCeEEEEEcCCCccc--cccccccC--C-CCCCCCcEEEEEeCCchhhcc--------cc---cceEeccCCCH
Q 043332 237 -GMLKAKAKFVLILDDMWKEF--RLEEVGIP--E-PSEENGCKLVITTRSLGVCRF--------MD---CKEIGVELLSQ 299 (897)
Q Consensus 237 -~~l~~~~r~LlVlDdv~~~~--~~~~~~~~--~-~~~~~gs~iivTTR~~~v~~~--------~~---~~~~~l~~L~~ 299 (897)
.....+++.++|+||+|... .++.+... . .+......|++|.... .... .. ...+.+++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 22335778999999998743 33333211 1 1112233456665532 1111 11 11278999999
Q ss_pred HHHHHHHHHhhhccccc-cchhhHHHHHHHHHHhCCChHHHHHHHhhh
Q 043332 300 EEALNLFLDKVRISTSQ-ILNLDKEIINSVVEECAGLPLAIVTVASCM 346 (897)
Q Consensus 300 ~ea~~Lf~~~~~~~~~~-~~~~~~~~~~~i~~~c~G~Plal~~~~~~L 346 (897)
+|..+++...+...... ...-..+..+.|++.++|.|..+..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999998776432211 122345788999999999999999888765
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=3.2e-10 Score=117.20 Aligned_cols=193 Identities=24% Similarity=0.306 Sum_probs=103.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH--------
Q 043332 141 LAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN-------- 212 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~-------- 212 (897)
|+|| ++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+... . ..+ .++|+...+......+..
T Consensus 1 F~gR--~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~-~-~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGR--EKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK-E-KGY-KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S---HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh-h-cCC-cEEEEecccchhhhHHHHHHHHHHHH
Confidence 6899 88999999999877778999999999999999999999762 1 111 345555444433222111
Q ss_pred -HHHHHHcCCCC----------CChhHHHHHHHHHHHHhc-cCeEEEEEcCCCccc-ccc----------ccccCCCCCC
Q 043332 213 -EIAAALNQSLP----------ENEDEVRRAGRLSGMLKA-KAKFVLILDDMWKEF-RLE----------EVGIPEPSEE 269 (897)
Q Consensus 213 -~i~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~-~~~----------~~~~~~~~~~ 269 (897)
.+...+..... ...........+.+.+.. +++++||+||+.... ... .+...... .
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 154 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-Q 154 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-c
Confidence 11222221111 112233444555555543 456999999997655 111 11111121 2
Q ss_pred CCcEEEEEeCCchhhcc--------cccc-eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 270 NGCKLVITTRSLGVCRF--------MDCK-EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 270 ~gs~iivTTR~~~v~~~--------~~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
....+|+++....+... .+.. .+.+++|+.+++++++...+... ... +...+..++|++.+||+|..|.
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 33345555554433322 1112 28999999999999998865443 111 2235567899999999998876
Q ss_pred H
Q 043332 341 T 341 (897)
Q Consensus 341 ~ 341 (897)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 28
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.09 E-value=3.4e-08 Score=110.53 Aligned_cols=292 Identities=16% Similarity=0.140 Sum_probs=162.6
Q ss_pred ccccchhhHHHHHHHHHHhc----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEI 214 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 214 (897)
..++|| ++++++|...+. +.....+.|+|++|+|||++++.++++... ....-.++++.+....+...++..|
T Consensus 30 ~~l~~R--e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 30 ENLPHR--EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCH--HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHHHH
Confidence 479999 777787777763 334567889999999999999999998732 2223446677777777788899999
Q ss_pred HHHHcCC-CCC-ChhHHHHHHHHHHHHh-ccCeEEEEEcCCCccc------cccccccCCCCCCCCcE--EEEEeCCchh
Q 043332 215 AAALNQS-LPE-NEDEVRRAGRLSGMLK-AKAKFVLILDDMWKEF------RLEEVGIPEPSEENGCK--LVITTRSLGV 283 (897)
Q Consensus 215 ~~~l~~~-~~~-~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~------~~~~~~~~~~~~~~gs~--iivTTR~~~v 283 (897)
+.++... .+. ..........+.+.+. .+++.+||||+++... .+..+..... ...+++ +|.+++...+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcch
Confidence 9998652 211 1223334445555554 3457899999998632 1222221111 112333 5666665443
Q ss_pred hc--------ccccceEeccCCCHHHHHHHHHHhhhccc--ccc-chhhHHHHHHHHHHhCCChHHHHHHHhhhc----C
Q 043332 284 CR--------FMDCKEIGVELLSQEEALNLFLDKVRIST--SQI-LNLDKEIINSVVEECAGLPLAIVTVASCMR----G 348 (897)
Q Consensus 284 ~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~-~~~~~~~~~~i~~~c~G~Plal~~~~~~L~----~ 348 (897)
.. ......+.+++++.++..+++..++.... ... ...++.+++......|..+.|+..+-.+.. .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22 22223388999999999999988764321 111 122233333333334557777776643321 1
Q ss_pred -CC--ChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhh-cCCC-CcccCHHHHHHH--HHHhC
Q 043332 349 -VD--EIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCA-LYPE-DFAIPKEELIDY--WIAEG 421 (897)
Q Consensus 349 -~~--~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~i~~~~li~~--w~a~g 421 (897)
.. +.+..+.+.+.+. .....-.+..|| .+-|..+..++ .... ...+...++... .+++.
T Consensus 266 ~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~-~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLP-LHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 11 2445555555431 112334577888 44333333222 2221 123444444432 22221
Q ss_pred cchhhhhhhhHHhHHHHHHHHHHHccccccc
Q 043332 422 FIEEVKDVQAKNDRGHTILNRLVNCCLLESA 452 (897)
Q Consensus 422 ~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 452 (897)
+-. ..........|++.|...++++..
T Consensus 332 ~~~----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGY----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCC----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 100 011224467799999999999864
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.06 E-value=7.8e-08 Score=106.48 Aligned_cols=295 Identities=15% Similarity=0.137 Sum_probs=164.5
Q ss_pred ccccchhhHHHHHHHHHHhc----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCC---cEEEEEEeCCCCCHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQPLDLIKLQ 211 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~~ 211 (897)
..++|| ++++++|..++. +.....+.|+|++|+|||++++.++++........ -..+|+.+....+...++
T Consensus 15 ~~l~gR--e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHR--DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCc--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 378999 778888888775 34456799999999999999999999863221111 245677777767778899
Q ss_pred HHHHHHHc---CCCCCC-hhHHHHHHHHHHHHh-ccCeEEEEEcCCCccc-c----ccccccC--CCC-CCCCcEEEEEe
Q 043332 212 NEIAAALN---QSLPEN-EDEVRRAGRLSGMLK-AKAKFVLILDDMWKEF-R----LEEVGIP--EPS-EENGCKLVITT 278 (897)
Q Consensus 212 ~~i~~~l~---~~~~~~-~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~-~----~~~~~~~--~~~-~~~gs~iivTT 278 (897)
..|+.++. ...+.. .+..+....+.+.+. .+++++||||+++.-. . +..+... ... .+....+|++|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999983 322211 122333444555553 3567899999998651 1 1122111 011 11223455555
Q ss_pred CCchhh--------cccccceEeccCCCHHHHHHHHHHhhhcc--ccccchhhHHHHHHHHHHhCCChHHH-HHHHhhh-
Q 043332 279 RSLGVC--------RFMDCKEIGVELLSQEEALNLFLDKVRIS--TSQILNLDKEIINSVVEECAGLPLAI-VTVASCM- 346 (897)
Q Consensus 279 R~~~v~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~G~Plal-~~~~~~L- 346 (897)
+..... .......+.+++.+.++..+++..++... .....++..+.+..++....|.|..+ ..+-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 443321 11222238899999999999999876421 11122333344555677777888443 3332211
Q ss_pred ---cCC---CChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcC--CCCcccCHHHHHHHHH
Q 043332 347 ---RGV---DEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALY--PEDFAIPKEELIDYWI 418 (897)
Q Consensus 347 ---~~~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w~ 418 (897)
... -+.+..+.+.+.+. .....-++..|| .+.|..+..++.. .++-.+...++...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~-~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLP-THSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 111 12334444444331 122234566787 5555444433311 1333455666555332
Q ss_pred -HhCcchhhhhhhhHHhHHHHHHHHHHHccccccc
Q 043332 419 -AEGFIEEVKDVQAKNDRGHTILNRLVNCCLLESA 452 (897)
Q Consensus 419 -a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 452 (897)
....+. ...........+++.|...|++...
T Consensus 319 ~~~~~~~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIG---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcC---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 111111 0122346677889999999999864
No 30
>PF05729 NACHT: NACHT domain
Probab=99.01 E-value=2.3e-09 Score=104.19 Aligned_cols=142 Identities=21% Similarity=0.287 Sum_probs=88.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCC---CcEEEEEEeCCCCCHH---HHHHHHHHHHcCCCCCChhHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLI---KLQNEIAAALNQSLPENEDEVRRAGRLS 236 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 236 (897)
|++.|+|.+|+||||+++.++.+....... +...+|+..++..... .+...|..+...... .... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 589999999999999999999987432211 4567777766543322 344444444332211 1111 122
Q ss_pred HHHhccCeEEEEEcCCCcccc---------ccccccC-CCC-CCCCcEEEEEeCCchh---hcccccce-EeccCCCHHH
Q 043332 237 GMLKAKAKFVLILDDMWKEFR---------LEEVGIP-EPS-EENGCKLVITTRSLGV---CRFMDCKE-IGVELLSQEE 301 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~~~~---------~~~~~~~-~~~-~~~gs~iivTTR~~~v---~~~~~~~~-~~l~~L~~~e 301 (897)
......+++++|+|++++... +..+... +.. ...+++++||+|.... ........ +.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 233357899999999976432 1111111 111 2468999999998766 23333333 8999999999
Q ss_pred HHHHHHHhh
Q 043332 302 ALNLFLDKV 310 (897)
Q Consensus 302 a~~Lf~~~~ 310 (897)
..+++.+.+
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998765
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=9.5e-09 Score=111.21 Aligned_cols=274 Identities=14% Similarity=0.110 Sum_probs=141.2
Q ss_pred ccccchhhHHHHHHHHHHhc-----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
.+++|+ ++.++.+..++. +...+.+.|+|++|+||||+|+.+++... ..+ .++..+.. .....+..
T Consensus 25 ~~~vG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~---~~~~~~~~-~~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQ--EKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNI---RITSGPAL-EKPGDLAA 95 (328)
T ss_pred HHhcCc--HHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCe---EEEecccc-cChHHHHH
Confidence 479999 666666655553 23356788999999999999999999862 121 12222111 11112223
Q ss_pred HHHHHcCCCCCChhHHH----HHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhcccc-
Q 043332 214 IAAALNQSLPENEDEVR----RAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCRFMD- 288 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~~----~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~- 288 (897)
++..+....----|+.+ ...........+.+..+|+|+..+...+.. .++ +.+-|..|||...+.....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 33332211000000000 011111112233455556665444322211 111 2345666777544432211
Q ss_pred --cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHHhhcc
Q 043332 289 --CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRGLV 366 (897)
Q Consensus 289 --~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l~~~~ 366 (897)
...+.++++++++..+++.+.+..... .-..+.+..|++.|+|.|..+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 122899999999999999987765322 22346788999999999965544443321 121110 0000
Q ss_pred ccCCCchhhhhhhhhhhccCCCchhhHHHHH-hhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHHHHHH-HHH
Q 043332 367 RSRNGVNADVLGRLEFSYHRLKDDKVQQCFL-YCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILN-RLV 444 (897)
Q Consensus 367 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~ 444 (897)
+. ...-......+...|..|+ +..+..+. ....|+.+ .+..+.+-... ....+.++..++ .|+
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~-~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~~~~~e~~Li 302 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLD-EMDRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTIEDVYEPYLI 302 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCC-HHHHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchHHHHhhHHHH
Confidence 00 0111233455667778887 45555554 66667665 34444432211 112344555666 889
Q ss_pred HccccccccC
Q 043332 445 NCCLLESAKD 454 (897)
Q Consensus 445 ~~~ll~~~~~ 454 (897)
+.+|++....
T Consensus 303 ~~~li~~~~~ 312 (328)
T PRK00080 303 QQGFIQRTPR 312 (328)
T ss_pred HcCCcccCCc
Confidence 9999975433
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=2.2e-10 Score=124.54 Aligned_cols=109 Identities=24% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCCCccEEEccCCCCcc-----cCChhHhhCCCCccEEEecCCCCCc-------CCcccccCcccceeeccccccccCC
Q 043332 518 PHCDILSTLLLQANGNLW-----TIPECFFVHMHGLKVLNLSHTDIEV-------LPSSVSDLTNLRSLLLRYCLRLRRV 585 (897)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~l~~L~~L~L~~~~~~~~l 585 (897)
..+.+|+.+.++++. +. .++. .+...+.|+.|+++++.+.. ++..+..+.+|++|++++|......
T Consensus 20 ~~l~~L~~l~l~~~~-l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 20 PKLLCLQVLRLEGNT-LGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHhhccEEeecCCC-CcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 344556777777662 21 1222 23455566777776665542 1233445666666666666443333
Q ss_pred c-chhcccc---CCEeeccCCcCcc-----cCccccCC-CCCCEEeCCCCCCC
Q 043332 586 P-SVAKLLA---LHYLDLEATRIEE-----VPEGMEML-ENLSYLYLYSLPLK 628 (897)
Q Consensus 586 p-~~~~l~~---L~~L~l~~~~l~~-----lp~~~~~l-~~L~~L~l~~~~~~ 628 (897)
+ .+..+.+ |++|++++|.+.. +...+..+ .+|+.|++++|.++
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 3 3444444 6666666665541 22334444 56666666666554
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=8.7e-08 Score=103.12 Aligned_cols=273 Identities=14% Similarity=0.116 Sum_probs=141.9
Q ss_pred ccccchhhHHHHHHHHHHhc-----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
.+|||+ ++.+++|..++. ......+.++|++|+|||+||+.+++... ..+ ..+..+.......+ ..
T Consensus 4 ~~~iG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~l-~~ 74 (305)
T TIGR00635 4 AEFIGQ--EKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNL---KITSGPALEKPGDL-AA 74 (305)
T ss_pred HHHcCH--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCE---EEeccchhcCchhH-HH
Confidence 368998 677777777775 23356688999999999999999999862 122 12221111111122 22
Q ss_pred HHHHHcCCCCCChhHH-----HHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhccc-
Q 043332 214 IAAALNQSLPENEDEV-----RRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCRFM- 287 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~-----~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~- 287 (897)
.+..++...----|+. .....+...+ .+.+..+|+|+..+...+.. +.+ +.+-|..||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHH
Confidence 2222221100000000 1111222222 34455667776655443321 122 245566677765443321
Q ss_pred -ccc-eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHHhhc
Q 043332 288 -DCK-EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRGL 365 (897)
Q Consensus 288 -~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l~~~ 365 (897)
... .+.+++++.++..+++.+.+..... .-..+.+..|++.|+|.|..+..++..+ |..+. ....
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~--~~~~ 214 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ--VRGQ 214 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH--HcCC
Confidence 112 2789999999999999987764321 2225667889999999997665544432 11100 0000
Q ss_pred cccCCCchhhhhhhhhhhccCCCchhhHHHHH-hhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHHHHHH-HH
Q 043332 366 VRSRNGVNADVLGRLEFSYHRLKDDKVQQCFL-YCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILN-RL 443 (897)
Q Consensus 366 ~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L 443 (897)
..-...........+...|..++ .+-+..+. ..+.++.+ .+..+.+-... ......++..++ .|
T Consensus 215 ~~it~~~v~~~l~~l~~~~~~l~-~~~~~~L~al~~~~~~~-~~~~~~ia~~l------------g~~~~~~~~~~e~~L 280 (305)
T TIGR00635 215 KIINRDIALKALEMLMIDELGLD-EIDRKLLSVLIEQFQGG-PVGLKTLAAAL------------GEDADTIEDVYEPYL 280 (305)
T ss_pred CCcCHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHhCCC-cccHHHHHHHh------------CCCcchHHHhhhHHH
Confidence 00000111122233566788887 45555554 45666544 33333322211 112345666677 69
Q ss_pred HHccccccccC
Q 043332 444 VNCCLLESAKD 454 (897)
Q Consensus 444 ~~~~ll~~~~~ 454 (897)
++++|++....
T Consensus 281 i~~~li~~~~~ 291 (305)
T TIGR00635 281 LQIGFLQRTPR 291 (305)
T ss_pred HHcCCcccCCc
Confidence 99999975443
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=2.3e-10 Score=122.47 Aligned_cols=165 Identities=25% Similarity=0.382 Sum_probs=119.4
Q ss_pred CCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccc
Q 043332 487 QEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVS 566 (897)
Q Consensus 487 ~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 566 (897)
.++|.+....-.+..+.+..|.+..+|... .++..|..|+|+.| .+..+|..+ +.+ -|++|-+++|+++.+|+.|+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~N-qlS~lp~~l-C~l-pLkvli~sNNkl~~lp~~ig 163 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSN-QLSHLPDGL-CDL-PLKVLIVSNNKLTSLPEEIG 163 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccc-hhhcCChhh-hcC-cceeEEEecCccccCCcccc
Confidence 445554444445566667777777776543 46677777888887 666777765 333 38888888888888888888
Q ss_pred cCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEe
Q 043332 567 DLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLK 645 (897)
Q Consensus 567 ~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 645 (897)
.+.+|..||.+.| .+..+| .++.+..|+.|+++.|++..+|+.++.| .|..||++.|++..+|.. |.+|++||+|.
T Consensus 164 ~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQ 240 (722)
T ss_pred cchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh-hhhhhhheeee
Confidence 8888888888887 556666 6888888888888888888888888855 478888888888888877 58888888888
Q ss_pred cccCchhhhhcHHHH
Q 043332 646 LSFGREALRETVEEA 660 (897)
Q Consensus 646 l~~~~~~~~~~~~~l 660 (897)
+. ++.....+..+
T Consensus 241 Le--nNPLqSPPAqI 253 (722)
T KOG0532|consen 241 LE--NNPLQSPPAQI 253 (722)
T ss_pred ec--cCCCCCChHHH
Confidence 87 44444444443
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=7.2e-11 Score=126.22 Aligned_cols=193 Identities=24% Similarity=0.367 Sum_probs=157.3
Q ss_pred cCCCcCCCccch--hccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC
Q 043332 482 AGLRLQEFPVEQ--EWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE 559 (897)
Q Consensus 482 ~~~~~~~~p~~~--~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 559 (897)
.+.+++++|..- --.......+++.|.+.++|..+ ..|..|..+.+..| .+..+|..+ +++..|.+|||+.|.++
T Consensus 58 s~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n-~~r~ip~~i-~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 58 SGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHN-CIRTIPEAI-CNLEALTFLDLSSNQLS 134 (722)
T ss_pred ccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhc-cceecchhh-hhhhHHHHhhhccchhh
Confidence 344555666431 11234566788899999988754 56788999999888 788888876 89999999999999999
Q ss_pred cCCcccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCC
Q 043332 560 VLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRL 638 (897)
Q Consensus 560 ~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (897)
.+|..++.|+ |+.|-+++| +++.+| .++.+..|..||.+.|++..+|..++.|.+|+.|++..|.+..+|.+. ..|
T Consensus 135 ~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El-~~L 211 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL-CSL 211 (722)
T ss_pred cCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH-hCC
Confidence 9999999887 899999986 788999 799999999999999999999999999999999999999999999885 433
Q ss_pred cccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhh
Q 043332 639 RDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYV 684 (897)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~ 684 (897)
.|..|+++ | +.....+-.+.+++. |+.|-+..|.+..-+..+
T Consensus 212 -pLi~lDfS-c-Nkis~iPv~fr~m~~-Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 212 -PLIRLDFS-C-NKISYLPVDFRKMRH-LQVLQLENNPLQSPPAQI 253 (722)
T ss_pred -ceeeeecc-c-Cceeecchhhhhhhh-heeeeeccCCCCCChHHH
Confidence 57888888 4 444555678899999 999999999887654433
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=1.1e-09 Score=119.25 Aligned_cols=86 Identities=22% Similarity=0.182 Sum_probs=36.5
Q ss_pred hCCCCccEEEecCCCCC-cCCcccccCcc---cceeecccccccc----CCc-chhcc-ccCCEeeccCCcCc-----cc
Q 043332 543 VHMHGLKVLNLSHTDIE-VLPSSVSDLTN---LRSLLLRYCLRLR----RVP-SVAKL-LALHYLDLEATRIE-----EV 607 (897)
Q Consensus 543 ~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~---L~~L~L~~~~~~~----~lp-~~~~l-~~L~~L~l~~~~l~-----~l 607 (897)
..+++|++|++++|.+. ..+..+..+.+ |++|++++|.... .+. .+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 34445555555555543 22222322222 5555555543210 111 12333 45555555555444 12
Q ss_pred CccccCCCCCCEEeCCCCCCC
Q 043332 608 PEGMEMLENLSYLYLYSLPLK 628 (897)
Q Consensus 608 p~~~~~l~~L~~L~l~~~~~~ 628 (897)
+..+..+.+|++|++++|.+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 158 AKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCc
Confidence 233444445555555555443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=6.6e-09 Score=99.20 Aligned_cols=105 Identities=28% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-ch-hccccCCEe
Q 043332 520 CDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SV-AKLLALHYL 597 (897)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~-~~l~~L~~L 597 (897)
+.+++.|++.+| .+..+.. .-..+.+|++|++++|.|+.++ .+..+++|++|++++| .++.++ .+ ..+++|++|
T Consensus 18 ~~~~~~L~L~~n-~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGN-QISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccc-ccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence 334555555555 3433321 1113445555555555555443 3444555555555554 333443 22 234555555
Q ss_pred eccCCcCcccC--ccccCCCCCCEEeCCCCCCC
Q 043332 598 DLEATRIEEVP--EGMEMLENLSYLYLYSLPLK 628 (897)
Q Consensus 598 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~ 628 (897)
++++|+|..+- ..+..+++|+.|++.+|.+.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555444332 12344445555555544433
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=7.2e-09 Score=98.96 Aligned_cols=120 Identities=25% Similarity=0.327 Sum_probs=53.8
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCccc-ccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSV-SDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l~~L~~L~L 576 (897)
.++.|++.+|.|+.+.. ....+.+|++|++++| .+..++. +..++.|++|++++|.|+.+++.+ ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 57899999999998853 3346789999999999 7777764 578999999999999999987665 46899999999
Q ss_pred cccccccCCc---chhccccCCEeeccCCcCcccCcc----ccCCCCCCEEeC
Q 043332 577 RYCLRLRRVP---SVAKLLALHYLDLEATRIEEVPEG----MEMLENLSYLYL 622 (897)
Q Consensus 577 ~~~~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l 622 (897)
++| .+..+. .+..+++|++|++.+|.+...+.. +..+++|+.||-
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 997 555554 478899999999999988765542 667788888874
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=1.3e-09 Score=107.52 Aligned_cols=131 Identities=25% Similarity=0.308 Sum_probs=106.4
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
..++.+++++|.|+.+..+ ..-.|.+|.|++++| .+..+.. +..+.+|..||||+|.++++-..-.+|-|.++|.|
T Consensus 284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 4678899999998887654 345788999999998 6666655 57888999999999988877655567888889999
Q ss_pred cccccccCCcchhccccCCEeeccCCcCcccC--ccccCCCCCCEEeCCCCCCCcCCC
Q 043332 577 RYCLRLRRVPSVAKLLALHYLDLEATRIEEVP--EGMEMLENLSYLYLYSLPLKKFPT 632 (897)
Q Consensus 577 ~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~ 632 (897)
++| .+..+..+++|.+|.+||+++|+|+.+. .+||+|+.|+++.+.+|.+..++.
T Consensus 360 a~N-~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQN-KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhh-hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 986 6778888999999999999999888664 569999999999999988776654
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=1.4e-07 Score=96.21 Aligned_cols=173 Identities=13% Similarity=0.173 Sum_probs=100.4
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
+|+|.+.......+.....+...+.+.|+|++|+|||+|++++++.... ....+.|+.+.... ...
T Consensus 17 ~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~~---~~~-------- 82 (229)
T PRK06893 17 NFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKSQ---YFS-------- 82 (229)
T ss_pred ccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHhh---hhh--------
Confidence 5664322222233333333333467899999999999999999998632 12345666653210 000
Q ss_pred CCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc---ccccc-cccCCCC-CCCCcEEEEE-eCC---------chhh
Q 043332 220 QSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE---FRLEE-VGIPEPS-EENGCKLVIT-TRS---------LGVC 284 (897)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~---~~~~~-~~~~~~~-~~~gs~iivT-TR~---------~~v~ 284 (897)
..+.+.+. +.-+||+||+|.. ..|+. +...+.. ...|..+||+ ++. .++.
T Consensus 83 -------------~~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~ 147 (229)
T PRK06893 83 -------------PAVLENLE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLA 147 (229)
T ss_pred -------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHH
Confidence 01122221 2348999999863 33432 2111111 1235556554 443 3455
Q ss_pred cccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHh
Q 043332 285 RFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVAS 344 (897)
Q Consensus 285 ~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~ 344 (897)
.++.... ++++++++++.++++++.+....- .--+++..-|++.+.|..-++..+-.
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 5555444 899999999999999988764321 22256778899999888766655443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.57 E-value=2.9e-06 Score=88.55 Aligned_cols=220 Identities=17% Similarity=0.214 Sum_probs=120.9
Q ss_pred cccchhhH-HHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHH
Q 043332 140 TLAGEKTK-KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAA 217 (897)
Q Consensus 140 ~~vGr~~~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~ 217 (897)
++||.+.- .+-.-|...+..+.+.-..+||++|+||||||+.++.... ..| ..++...+ +.++. +|+
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~---~~f-----~~~sAv~~gvkdlr-~i~-- 93 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN---AAF-----EALSAVTSGVKDLR-EII-- 93 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC---Cce-----EEeccccccHHHHH-HHH--
Confidence 67776220 0112234456667788888999999999999999999752 333 33333222 22222 222
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE--EeCCchhh----ccccc
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI--TTRSLGVC----RFMDC 289 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TTR~~~v~----~~~~~ 289 (897)
..-.+....+++.+|++|.|..- .+-+.+. |.-..|.-|+| ||.+.... -...+
T Consensus 94 ---------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 94 ---------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred ---------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 11222333578999999999653 2323333 22357877776 66665432 22334
Q ss_pred ceEeccCCCHHHHHHHHHHhhhcccccc---ch-hhHHHHHHHHHHhCCChHHHHHHH---hhhcCCC---ChhHHHHHH
Q 043332 290 KEIGVELLSQEEALNLFLDKVRISTSQI---LN-LDKEIINSVVEECAGLPLAIVTVA---SCMRGVD---EIHEWRNAL 359 (897)
Q Consensus 290 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~---~~-~~~~~~~~i~~~c~G~Plal~~~~---~~L~~~~---~~~~w~~~l 359 (897)
..+.+++|+.+|-.+++.+.+....... .. -.++.-..++..++|--.++-... ..+.... ..+..++++
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l 235 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEIL 235 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHH
Confidence 4499999999999999988543322211 11 124466778889998765443222 2222211 123333333
Q ss_pred HHHhhccccCCCchhhhhhhhhhhccCCC
Q 043332 360 NELRGLVRSRNGVNADVLGRLEFSYHRLK 388 (897)
Q Consensus 360 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 388 (897)
.+-....-...+..-++..++.-|...-.
T Consensus 236 ~~~~~~~Dk~gD~hYdliSA~hKSvRGSD 264 (436)
T COG2256 236 QRRSARFDKDGDAHYDLISALHKSVRGSD 264 (436)
T ss_pred hhhhhccCCCcchHHHHHHHHHHhhccCC
Confidence 32111111111333466777777777665
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.57 E-value=7.8e-06 Score=93.83 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=118.7
Q ss_pred ccccchhhHHHHHHHHHHhc----CCC-eeEEEEEcCCCchHHHHHHHHHHHHhhcc--CCC--cEEEEEEeCCCCCHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM----GDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKF--NVVIWVTVSQPLDLIK 209 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f--~~~~wv~vs~~~~~~~ 209 (897)
..++|| ++++++|...|. +.. ..++.|+|.+|.|||+.++.|.+...... ... -.+++|.+..-.+...
T Consensus 755 D~LPhR--EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 755 KYLPCR--EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CcCCCh--HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 367899 777777777664 233 35788999999999999999988763321 111 1356777777677888
Q ss_pred HHHHHHHHHcCCCCC-ChhHHHHHHHHHHHHhc--cCeEEEEEcCCCcccc-----ccccccCCCCCCCCcEEEE--EeC
Q 043332 210 LQNEIAAALNQSLPE-NEDEVRRAGRLSGMLKA--KAKFVLILDDMWKEFR-----LEEVGIPEPSEENGCKLVI--TTR 279 (897)
Q Consensus 210 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~--~~r~LlVlDdv~~~~~-----~~~~~~~~~~~~~gs~iiv--TTR 279 (897)
+...|..++....+. ..........+...+.. +...+||||+|+.-.. +-.+.. .+ ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR-~~-~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFD-WP-TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHH-Hh-hccCCeEEEEEecC
Confidence 888999888543322 22223344445544422 2246899999975321 111111 11 123455544 333
Q ss_pred Cch--------hhcccccceEeccCCCHHHHHHHHHHhhhcccccc-chhhHHHHHHHHHHhCCChHHHHHHHhhh
Q 043332 280 SLG--------VCRFMDCKEIGVELLSQEEALNLFLDKVRISTSQI-LNLDKEIINSVVEECAGLPLAIVTVASCM 346 (897)
Q Consensus 280 ~~~--------v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~~i~~~c~G~Plal~~~~~~L 346 (897)
..+ +...++...+...|.+.++-.+++..++....... +..++-+|+.++..-|-.-.||.++-.+.
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 222 22233333367799999999999998876421111 22334444444444455556776665444
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=3.8e-07 Score=101.86 Aligned_cols=174 Identities=16% Similarity=0.245 Sum_probs=101.5
Q ss_pred ccccchhhHHHHHH---HHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHH
Q 043332 139 ATLAGEKTKKVVER---IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEI 214 (897)
Q Consensus 139 ~~~vGr~~~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i 214 (897)
.++||+ +..+.. +..++.......+.++|++|+||||+|+.+++... ..| +.++... +... .+++
T Consensus 12 ~d~vGq--~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~-----~~l~a~~~~~~~-ir~i 80 (413)
T PRK13342 12 DEVVGQ--EHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD---APF-----EALSAVTSGVKD-LREV 80 (413)
T ss_pred HHhcCc--HHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC---CCE-----EEEecccccHHH-HHHH
Confidence 368887 444444 66777777777889999999999999999999752 222 2222211 1111 1112
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEE--EeCCchhh--c--c
Q 043332 215 AAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVI--TTRSLGVC--R--F 286 (897)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iiv--TTR~~~v~--~--~ 286 (897)
+.. .......+++.+|++|+++... ..+.+...+. .|..+++ ||.+.... . .
T Consensus 81 i~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 81 IEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred HHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh
Confidence 111 1111123567899999998642 2333333232 3555554 33432211 1 1
Q ss_pred cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHH
Q 043332 287 MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 287 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~ 343 (897)
-.+..+.+.+++.++.+.++.+.+............+....|++.|+|.+..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 112338999999999999998865432110102235667889999999997765443
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=7.3e-09 Score=102.27 Aligned_cols=121 Identities=27% Similarity=0.274 Sum_probs=54.1
Q ss_pred CccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCEeecc
Q 043332 522 ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLE 600 (897)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~ 600 (897)
.|+++++++| .+..+.++. +-.+.+|+|++|.|.|..+-. +..|++|+.||||+|. +..+. --.+|-|.++|.++
T Consensus 285 ~LtelDLS~N-~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhcccccc-chhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 4455555554 444444433 444455555555555444332 4445555555555542 22222 12334444455555
Q ss_pred CCcCcccCccccCCCCCCEEeCCCCCCCcCCC-CcccCCcccCeEecc
Q 043332 601 ATRIEEVPEGMEMLENLSYLYLYSLPLKKFPT-GILPRLRDLYKLKLS 647 (897)
Q Consensus 601 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 647 (897)
+|.++.+ .++++|-+|..|++++|++..+.. .-+|+|+.|+++.+.
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 5544444 344445555555555554443321 113445555444443
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.49 E-value=7.9e-07 Score=91.14 Aligned_cols=173 Identities=14% Similarity=0.163 Sum_probs=102.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
++++...+..++.+.+++.....+.|.|+|..|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred CcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----
Confidence 444322356677777776666678899999999999999999999863 1233455665443211 00
Q ss_pred CCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---cc-cccccCCCC-CCCCcEEEEEeCCch---------hhc
Q 043332 220 QSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---RL-EEVGIPEPS-EENGCKLVITTRSLG---------VCR 285 (897)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTTR~~~---------v~~ 285 (897)
......+ .+ .-+||+||++... .| +.+...+.. ...+.++|+||+... +..
T Consensus 82 -------------~~~~~~~-~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 -------------PEVLEGL-EQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -------------HHHHhhc-cc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH
Confidence 0111112 12 2389999997542 22 222221111 123347888888532 122
Q ss_pred ccc-cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHh
Q 043332 286 FMD-CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVAS 344 (897)
Q Consensus 286 ~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~ 344 (897)
.+. ...+++.++++++...++...+.... .+-..+..+.+++.+.|.|..+..+..
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRG---LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 222 22389999999999999876543221 112245667788889999987766543
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.49 E-value=4.4e-06 Score=100.61 Aligned_cols=309 Identities=14% Similarity=0.198 Sum_probs=170.4
Q ss_pred cccchhhHHHHHHHHHHhc---CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCH---HHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL---IKLQNE 213 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~---~~~~~~ 213 (897)
.++|| +.+++.|...+. ...-.++.+.|..|+|||+++++|.....+.++.|-.-.+-....+... ....++
T Consensus 1 ~l~GR--e~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGR--ETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCch--HhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 36899 667888887764 3456799999999999999999999987443222211111111122111 122222
Q ss_pred HHHH-------------------HcCCCCCC----------------------hhHHHH-----HHHHHHHHhccCeEEE
Q 043332 214 IAAA-------------------LNQSLPEN----------------------EDEVRR-----AGRLSGMLKAKAKFVL 247 (897)
Q Consensus 214 i~~~-------------------l~~~~~~~----------------------~~~~~~-----~~~l~~~l~~~~r~Ll 247 (897)
++.+ ++...... .....+ ...+.....+.|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 2222 22111000 000011 1111222234679999
Q ss_pred EEcCC-Ccccc----ccccccCCCC-CCCCcEEEE--EeCCc--hhhccccc-ceEeccCCCHHHHHHHHHHhhhccccc
Q 043332 248 ILDDM-WKEFR----LEEVGIPEPS-EENGCKLVI--TTRSL--GVCRFMDC-KEIGVELLSQEEALNLFLDKVRISTSQ 316 (897)
Q Consensus 248 VlDdv-~~~~~----~~~~~~~~~~-~~~gs~iiv--TTR~~--~v~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 316 (897)
|+||+ |-... ++.+...... .-....|.. |.+.. .+...-.. ..+.+.||+..+...+.....+...
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 99999 42211 1111111100 000112222 22322 11111122 2299999999999999988876532
Q ss_pred cchhhHHHHHHHHHHhCCChHHHHHHHhhhcC------CCChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCch
Q 043332 317 ILNLDKEIINSVVEECAGLPLAIVTVASCMRG------VDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDD 390 (897)
Q Consensus 317 ~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~------~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 390 (897)
....+....|+++..|+|+-+.-+-..+.. +.+...|..-...+... +.-+.+...+..-.+.|| .
T Consensus 237 --~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~-----~~~~~vv~~l~~rl~kL~-~ 308 (849)
T COG3899 237 --LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL-----ATTDAVVEFLAARLQKLP-G 308 (849)
T ss_pred --cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc-----hhhHHHHHHHHHHHhcCC-H
Confidence 223567888999999999999888777755 23344554332222211 122235556788899999 7
Q ss_pred hhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHHHHHHHHHHcccccccc------CC--C-eEEeh
Q 043332 391 KVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILNRLVNCCLLESAK------DG--R-CVKMH 461 (897)
Q Consensus 391 ~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~------~~--~-~~~mH 461 (897)
..|..+-..|++-.. |+.+-|-..|- +.....+...++.|....++-..+ .. . +-..|
T Consensus 309 ~t~~Vl~~AA~iG~~--F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNR--FDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCcc--CCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 889999999998655 45555554441 123455666667776666664221 11 1 22468
Q ss_pred HHHHHHHHhhhc
Q 043332 462 DLIRDMALSITS 473 (897)
Q Consensus 462 dlv~d~a~~~~~ 473 (897)
|.|++.|-....
T Consensus 376 ~~vqqaaY~~i~ 387 (849)
T COG3899 376 DRVQQAAYNLIP 387 (849)
T ss_pred HHHHHHHhccCc
Confidence 888887765443
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.7e-08 Score=105.24 Aligned_cols=138 Identities=24% Similarity=0.187 Sum_probs=77.7
Q ss_pred hhccccccEEEccccccccCCC-CCCCCCCCccEEEccCCCCcccC--ChhHhhCCCCccEEEecCCCCCcCCcc--ccc
Q 043332 493 QEWKENLERVSLMKNNIKEIPS-YMSPHCDILSTLLLQANGNLWTI--PECFFVHMHGLKVLNLSHTDIEVLPSS--VSD 567 (897)
Q Consensus 493 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~ 567 (897)
....++++.+++.+..+...+. .....|++++.|++++| -+... -..+...+++|+.|+|+.|.+...-++ -..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3345678888888877665543 34567888888888887 33222 123446788888888888876543322 134
Q ss_pred Ccccceeecccccccc-CCc-chhccccCCEeeccCCc-CcccCccccCCCCCCEEeCCCCCCCcCC
Q 043332 568 LTNLRSLLLRYCLRLR-RVP-SVAKLLALHYLDLEATR-IEEVPEGMEMLENLSYLYLYSLPLKKFP 631 (897)
Q Consensus 568 l~~L~~L~L~~~~~~~-~lp-~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~ 631 (897)
+.+|+.|.|+.|...- ++. -...+++|+.|.+..|. +..-......+..|+.|+|++|++..++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 6667777777764220 111 13344556666666552 2111112233445566666666555544
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.7e-07 Score=105.07 Aligned_cols=171 Identities=31% Similarity=0.416 Sum_probs=94.8
Q ss_pred cccEEEccccccccCCCCCCCCCC-CccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCD-ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
.+..+++.+|.+..+++.. .... +|+.|++++| .+..+|.. ...++.|+.|++++|.+..+|...+.+.+|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCcccc-ccchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4556666666666665432 2232 5666666666 45555422 25566666666666666666655556666666666
Q ss_pred cccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 577 RYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 577 ~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
++| .+..+| .+..+..|++|.+++|.+...+..+.++.++..+.+.+|.+..++.. ++.+++|+.|+++ ++...
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s-~n~i~-- 268 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLS-NNQIS-- 268 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-hccccccceeccc-ccccc--
Confidence 664 455555 34455556666666665555555566666666666655555544333 3556666666665 12111
Q ss_pred cHHHHHhhhcccceeEEEeccc
Q 043332 656 TVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~~l 677 (897)
.+..++.+.+ ++.|+++.+.+
T Consensus 269 ~i~~~~~~~~-l~~L~~s~n~~ 289 (394)
T COG4886 269 SISSLGSLTN-LRELDLSGNSL 289 (394)
T ss_pred ccccccccCc-cCEEeccCccc
Confidence 1112555555 66666655543
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.8e-08 Score=102.69 Aligned_cols=180 Identities=19% Similarity=0.131 Sum_probs=114.6
Q ss_pred ccccEEEccccccccCCC--CCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC--cCCcccccCcccc
Q 043332 497 ENLERVSLMKNNIKEIPS--YMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE--VLPSSVSDLTNLR 572 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~ 572 (897)
.+++.|+++.|-+..+.+ .+...+++|+.|+++.|..........-..+++|+.|.|+.|.++ .+-.-.-.+++|.
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 467888888886554322 233467888888888884333333333345678888888888887 2222334678888
Q ss_pred eeeccccccccCCc-chhccccCCEeeccCCcCcccC--ccccCCCCCCEEeCCCCCCCcC--CCC----cccCCcccCe
Q 043332 573 SLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVP--EGMEMLENLSYLYLYSLPLKKF--PTG----ILPRLRDLYK 643 (897)
Q Consensus 573 ~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~--~~~----~l~~l~~L~~ 643 (897)
.|.|.+|..+..-. +...++.|+.|||++|++-.++ ...+.++.|+.|+++.|.+.++ |+. ....+.+|+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 88888875333222 4566778888888888877776 4478888888888888876654 221 1244567888
Q ss_pred EecccCchhhhhcHHHHHhhhcccceeEEEeccc
Q 043332 644 LKLSFGREALRETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
|++..++-..-..+..+..+.+ |+.|.+..+-+
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~n-lk~l~~~~n~l 338 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLEN-LKHLRITLNYL 338 (505)
T ss_pred eecccCccccccccchhhccch-hhhhhcccccc
Confidence 8777222112334456666666 66666555443
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.5e-05 Score=91.25 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=107.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 199 (897)
.++||. +..++.|.+++..+. ...+.++|..|+||||+|+.+++...... +.|.-++++
T Consensus 16 dEVIGQ--e~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 16 ASLVGQ--EHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHcCc--HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 479998 778888888888766 45678999999999999999998763110 011112222
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH----hccCeEEEEEcCCCccc--cccccccCCCCCCCCcE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML----KAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCK 273 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~ 273 (897)
..+.+..+. .+..+++.. ..++.-++|||+++... .+..+...+.....+.+
T Consensus 94 DAas~rgVD----------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 94 DAASNRGVD----------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred cccccccHH----------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 222221111 122222221 12445588999998643 24444433332244677
Q ss_pred EEEEeCCc-hhhcc--cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHHH
Q 043332 274 LVITTRSL-GVCRF--MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIVT 341 (897)
Q Consensus 274 iivTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~~ 341 (897)
+|+||++. .+..- ..|..+.+.+++.++..+.+.+.+..... ....+....|++.++|... |+..
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77777763 33211 22444999999999999999887654321 1225667789999998664 5544
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.6e-08 Score=104.96 Aligned_cols=285 Identities=17% Similarity=0.132 Sum_probs=162.7
Q ss_pred cccEEEccccccccCC--CCCCCCCCCccEEEccCCCCcccCC-hhHhhCCCCccEEEecCCC-CCc--CCcccccCccc
Q 043332 498 NLERVSLMKNNIKEIP--SYMSPHCDILSTLLLQANGNLWTIP-ECFFVHMHGLKVLNLSHTD-IEV--LPSSVSDLTNL 571 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~-i~~--lp~~i~~l~~L 571 (897)
.++.|++.+..-.... ..+..+|++++.|.+.+|..+++.. ..+-..++.|++|+|..|. |+. +-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3556666655322111 1234578999999998886554422 2233568899999999854 652 22234578999
Q ss_pred ceeeccccccccCCc---chhccccCCEeeccCC-cCc--ccCccccCCCCCCEEeCCCCC-CCcCCC-CcccCCcccCe
Q 043332 572 RSLLLRYCLRLRRVP---SVAKLLALHYLDLEAT-RIE--EVPEGMEMLENLSYLYLYSLP-LKKFPT-GILPRLRDLYK 643 (897)
Q Consensus 572 ~~L~L~~~~~~~~lp---~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~ 643 (897)
.||++++|..++.-. -..++..|+.+.+.+| .+. .+-..=+...-+..+++..|. +++... .+-..+..||.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 999999998776533 2556667777777776 221 111111222334555555664 333221 11234677888
Q ss_pred EecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecc
Q 043332 644 LKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNC 723 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 723 (897)
|+.+.+.......+..++.-..+|+.|.++.+.. +.... ...+..+.+.|+.+++..|
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~--fsd~~--------------------ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ--FSDRG--------------------FTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccch--hhhhh--------------------hhhhhcCChhhhhhccccc
Confidence 8888555555555666665544488888776542 10000 0001114455666666666
Q ss_pred cccCCCC---cccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCCCCCChhhhhhccCCcc
Q 043332 724 KICEREE---PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLE 799 (897)
Q Consensus 724 ~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~ 799 (897)
....+.. .-..++.|+.|.++.|..+++.+ ...+.. ...+. .|..|.+.+|+.+++- .+..+..+++||
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~g-----i~~l~~~~c~~~-~l~~lEL~n~p~i~d~-~Le~l~~c~~Le 429 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEG-----IRHLSSSSCSLE-GLEVLELDNCPLITDA-TLEHLSICRNLE 429 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhh-----hhhhhhcccccc-ccceeeecCCCCchHH-HHHHHhhCcccc
Confidence 5433221 13456778888888776555331 011111 12233 6777888888777663 445566777788
Q ss_pred EEEEeccccchh
Q 043332 800 VLEVKVCFSIEE 811 (897)
Q Consensus 800 ~L~l~~c~~l~~ 811 (897)
.+++.+|..+..
T Consensus 430 ri~l~~~q~vtk 441 (483)
T KOG4341|consen 430 RIELIDCQDVTK 441 (483)
T ss_pred eeeeechhhhhh
Confidence 888877765543
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=7.4e-07 Score=82.54 Aligned_cols=117 Identities=22% Similarity=0.236 Sum_probs=80.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc--CCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML 239 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (897)
-+++.|+|.+|+|||++++.++++..... ..-..++|+.+....+...+...|+.+++...............+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999999863211 0134577999888889999999999999977665445555667777777
Q ss_pred hccCeEEEEEcCCCcc-c--cccccccCCCCCCCCcEEEEEeCC
Q 043332 240 KAKAKFVLILDDMWKE-F--RLEEVGIPEPSEENGCKLVITTRS 280 (897)
Q Consensus 240 ~~~~r~LlVlDdv~~~-~--~~~~~~~~~~~~~~gs~iivTTR~ 280 (897)
.+.+..+||+|+++.- . .++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6666789999999764 2 2222322222 566678877765
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=1.6e-07 Score=105.32 Aligned_cols=145 Identities=30% Similarity=0.404 Sum_probs=63.3
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeecc
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLR 577 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 577 (897)
+++.|++++|.+..++.. ...+++|+.|+++.| .+..+|... ..++.|+.|++++|.+..+|..+..+.+|++|.++
T Consensus 141 nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLL-SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhh-hhhhhhhheeccCCccccCchhhhhhhhhhhhhhc
Confidence 444444444444444311 124444444444444 344444321 13444444444444444444444344444444444
Q ss_pred ccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 578 YCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 578 ~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+|..+..+..+.++.++..|.+.++.+..+|..++.+.+|+.|++++|.+..++. ++.+.+|+.|+++
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s 285 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLS 285 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEecc
Confidence 4322222223444444444444444444444444444444444444444444443 3444444444444
No 54
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=5.7e-07 Score=82.63 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=75.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhcc
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAK 242 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (897)
+++.|.|+.|+||||++++++.+.. ....+++++..+.........+ ....+.+.. ..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD-----------------LLEYFLELI-KP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhh-cc
Confidence 6899999999999999999998862 3345677766554321100000 111122221 23
Q ss_pred CeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhcc-----cc-cce-EeccCCCHHHH
Q 043332 243 AKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCRF-----MD-CKE-IGVELLSQEEA 302 (897)
Q Consensus 243 ~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~-----~~-~~~-~~l~~L~~~ea 302 (897)
+..+|+||++....+|......+.+.....+|++|+.+...... .. ... ++|.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 56789999999887777665555544456799999987555422 11 222 89999988763
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.1e-05 Score=86.82 Aligned_cols=175 Identities=18% Similarity=0.241 Sum_probs=109.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhh---ccCCCcEEEEEEe-CCCCCHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTV-SQPLDLIKLQNE 213 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v-s~~~~~~~~~~~ 213 (897)
.+++|. +..++.+..++..+. ..+..++|+.|+||||+|+.++...-. ...|+|...|... +....++++. +
T Consensus 4 ~~i~g~--~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~ 80 (313)
T PRK05564 4 HTIIGH--ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-N 80 (313)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-H
Confidence 357887 677888888887766 467789999999999999999986521 2346676666542 2333333322 2
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCc--cccccccccCCCCCCCCcEEEEEeCCchhh-c--ccc
Q 043332 214 IAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWK--EFRLEEVGIPEPSEENGCKLVITTRSLGVC-R--FMD 288 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~--~~~~~~~~~~~~~~~~gs~iivTTR~~~v~-~--~~~ 288 (897)
+.+.+.... . .+++-++|+|+++. ...+..+...+.....++.+|++|.+.+.. . ...
T Consensus 81 ~~~~~~~~p----------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 81 IIEEVNKKP----------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHhcCc----------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 333222110 1 13344667776643 344555555555445688888888654322 1 122
Q ss_pred cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 289 CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 289 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
+..+.+.++++++....+.+.+... ..+.+..++..++|.|..+.
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 3448999999999988886654211 12346678899999986544
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.1e-05 Score=88.55 Aligned_cols=189 Identities=16% Similarity=0.200 Sum_probs=103.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +..++.+...+..+. ...+.++|+.|+||||+|+.+++...... ... ..++.......++...
T Consensus 16 ~~iiGq--~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 16 RDIIGQ--KHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-GIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCCCHHHHHHhcC
Confidence 478998 677778888887665 45789999999999999999998762110 000 0000000011111110
Q ss_pred HcCCC----CCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCC-chhhcc
Q 043332 218 LNQSL----PENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRS-LGVCRF 286 (897)
Q Consensus 218 l~~~~----~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~ 286 (897)
..... .......+.+..+...+. .+++-++|+|+++... .++.+...+.......++|++|.+ ..+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 000001112222222221 2345699999997643 234443333333445667766654 333222
Q ss_pred cc--cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 287 ~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
.. +..+++.+++.++..+.+...+..... .-.++.+..|++.++|.|..+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 21 333999999999999888876543321 1124567789999999886443
No 57
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.37 E-value=7.7e-07 Score=90.76 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=62.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC--CCHHHHHHHHHHHHcCCCCCChhH--H----HHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQNEIAAALNQSLPENEDE--V----RRA 232 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~--~----~~~ 232 (897)
....++|+|++|+|||||++.+++... ..+|+.++|+.+..+ .++.++++.|...+-....+.... . ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999873 348999999997776 789999999833322111111111 1 111
Q ss_pred HHHHHHHhccCeEEEEEcCCCc
Q 043332 233 GRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 233 ~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
.........+++.++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 1122222357899999999965
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.36 E-value=6e-06 Score=90.43 Aligned_cols=196 Identities=14% Similarity=0.159 Sum_probs=106.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCc-EEEEEEeCCCCCH--HHHHH--H
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDL--IKLQN--E 213 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~--~~~~~--~ 213 (897)
..++|+ +..++.+..++..+..+.+.++|+.|+||||+|+.+++.... ..+. ..+.+++++..+. ..+.. .
T Consensus 15 ~~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQ--DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG--DPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCC--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC--cccccceEEechhhhhhcchhhhhcCcc
Confidence 478898 778888888888777677889999999999999999988631 2221 2334444321100 00000 0
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHHHh-----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCCc-hhhc
Q 043332 214 IAAALNQSLPENEDEVRRAGRLSGMLK-----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRSL-GVCR 285 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~-~v~~ 285 (897)
....++...............+.+... ...+-+||+||+.... ....+...+......+++|+||... .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 000000000000001122222222221 1234589999996532 1222222222223456788777542 2222
Q ss_pred ccc--cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 286 FMD--CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 286 ~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
... +..+.+.+++.++...++.+.+..... .-..+.+..+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 111 223889999999999998886654322 12256778899999998765544
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=2.4e-08 Score=103.66 Aligned_cols=287 Identities=20% Similarity=0.219 Sum_probs=170.8
Q ss_pred CccEEEecCCCC---CcCCcccccCcccceeeccccccccCCc--c-hhccccCCEeeccCC-cCccc--CccccCCCCC
Q 043332 547 GLKVLNLSHTDI---EVLPSSVSDLTNLRSLLLRYCLRLRRVP--S-VAKLLALHYLDLEAT-RIEEV--PEGMEMLENL 617 (897)
Q Consensus 547 ~Lr~L~L~~~~i---~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~-~~~l~~L~~L~l~~~-~l~~l--p~~~~~l~~L 617 (897)
.|+.|.+.++.- ..+-..-..+++++.|++.+|..+++-. + -..+.+|++|++..| .++.. -......++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 478888888762 2333345678999999999998877655 3 346788999999987 66542 2234456889
Q ss_pred CEEeCCCCC-CCcCCC-CcccCCcccCeEecccCchhhhhcHHHHHhh-hcccceeEEEec-cchhhhhhhhccCCCCce
Q 043332 618 SYLYLYSLP-LKKFPT-GILPRLRDLYKLKLSFGREALRETVEEAARL-SNRLDTFEGHFS-TLKDFNIYVKSTDGRGSK 693 (897)
Q Consensus 618 ~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~ 693 (897)
.+|++++|. ++.-.. -...+++.|..+....|.......+...+.- .. +..+++..+ .+++...+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~-i~~lnl~~c~~lTD~~~~~--------- 288 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE-ILKLNLQHCNQLTDEDLWL--------- 288 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH-hhccchhhhccccchHHHH---------
Confidence 999999986 333100 1133444555554442222222212111111 11 222222111 111111110
Q ss_pred eeEEEecccccccccccccccccceeeecccccCCCCc---ccCccccceeEEeccCCcccccccCcccCCccccccccc
Q 043332 694 NYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEP---IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSH 770 (897)
Q Consensus 694 ~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~ 770 (897)
+...+..+..+..++|...++... -....+|+.|.+.+|....+.+ +..++.-.+
T Consensus 289 --------------i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------ft~l~rn~~ 346 (483)
T KOG4341|consen 289 --------------IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------FTMLGRNCP 346 (483)
T ss_pred --------------HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------hhhhhcCCh
Confidence 011344566677777765333322 3567899999999998766443 333322222
Q ss_pred cccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccc
Q 043332 771 DLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFK 850 (897)
Q Consensus 771 ~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~ 850 (897)
.|..+++.+|....+..-...-.+++.|+.|.++.|..+++.-. .. ++ ...-....|+.|.|.+||.++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi----~~---l~----~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI----RH---LS----SSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh----hh---hh----hccccccccceeeecCCCCch
Confidence 89999999998776642233346889999999999977765410 00 00 111256789999999999887
Q ss_pred cccCCCCcccCCCccEEEecCCCCCcc
Q 043332 851 SFCSNNGVLVCNSLQEIEVRGCPKLKR 877 (897)
Q Consensus 851 ~~~~~~~~~~~p~L~~L~i~~C~~L~~ 877 (897)
+-.. +....+++||.+++.+|....+
T Consensus 416 d~~L-e~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 416 DATL-EHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HHHH-HHHhhCcccceeeeechhhhhh
Confidence 6543 2344589999999999977654
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=3.7e-06 Score=79.58 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCCh
Q 043332 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENE 226 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 226 (897)
+..+..+...+.....+.+.|+|.+|+||||+|+.+++... ..-..++++..............+...
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 71 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF--------- 71 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh---------
Confidence 66778888888776678899999999999999999999873 222346666655543322221111100
Q ss_pred hHHHHHHHHHHHHhccCeEEEEEcCCCcc-----ccccccccCCCC---CCCCcEEEEEeCCch
Q 043332 227 DEVRRAGRLSGMLKAKAKFVLILDDMWKE-----FRLEEVGIPEPS---EENGCKLVITTRSLG 282 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~-----~~~~~~~~~~~~---~~~gs~iivTTR~~~ 282 (897)
............++.++|+||++.. ..+......... ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111345789999999853 112221111111 135778888888654
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=8e-06 Score=95.30 Aligned_cols=181 Identities=14% Similarity=0.174 Sum_probs=106.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (897)
.++||. +..++.|.+++..+++ ..+.++|+.|+||||+|+.+++....... .|.-++++
T Consensus 16 ddIIGQ--e~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQ--SHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 479998 6777888888877665 45689999999999999999988632100 01011222
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVIT 277 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivT 277 (897)
.......+..+ ++|... +...-..+++-++|||++... ...+.+...+.....+.++|++
T Consensus 94 dAas~~kVDdI-ReLie~-----------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 94 DAASRTKVDDT-RELLDN-----------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred ccccccCHHHH-HHHHHH-----------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 11111111111 112111 111111356679999999763 3344443333322345566665
Q ss_pred eCC-chhhcc--cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 278 TRS-LGVCRF--MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 278 TR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
|.+ ..+... ..+..|++.+++.++..+.+.+.+.... .....+.+..|++.++|.|.-+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 444321 2344499999999999999987664421 1223456788999999988644433
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=9.3e-06 Score=91.65 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=106.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCC-CcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNK-FNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
.++||. +..++.|.+++..+++ ..+.++|..|+||||+|+.+++........ -.. + .+..++.......|..
T Consensus 16 ddVIGQ--e~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g---~-~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQ--EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG---I-TAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCc--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc---C-CCCCCcccHHHHHHHc
Confidence 479998 7778888888887764 577899999999999999999876321000 000 0 0000111111111110
Q ss_pred HH-----cCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE-EeCCchhh
Q 043332 217 AL-----NQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI-TTRSLGVC 284 (897)
Q Consensus 217 ~l-----~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v~ 284 (897)
.- ..+.. .....+.++.+.+.+. .+++-++|+|+++.. ...+.+...+..-..++++|+ ||....+.
T Consensus 90 G~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 90 GRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00 00000 0011122222322221 355669999999764 233444333332234555555 54444443
Q ss_pred ccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 285 RFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 285 ~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
... .|..+.+..++.++..+.+.+.+..... ....+....|++.++|.|.....+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2344999999999999998877654321 112345678999999999654443
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=98.30 E-value=1.2e-05 Score=86.78 Aligned_cols=180 Identities=14% Similarity=0.160 Sum_probs=103.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCc-EEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. ++.++.|..++..+..+-+.++|++|+||||+|+.+++.... ..|. .++-+..++..+...+ +++++.
T Consensus 13 ~~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~eln~sd~~~~~~v-r~~i~~ 87 (319)
T PLN03025 13 DDIVGN--EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG--PNYKEAVLELNASDDRGIDVV-RNKIKM 87 (319)
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc--ccCccceeeecccccccHHHH-HHHHHH
Confidence 378897 667777877777777666789999999999999999998621 2222 1222233333333222 222211
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCCc-hhhccc--ccceE
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRSL-GVCRFM--DCKEI 292 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~--~~~~~ 292 (897)
+..... ....++.-++|+|+++... ....+...+......+++++++... .+.... .+..+
T Consensus 88 ~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 88 FAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 110000 0002345689999997642 1222222222223456777766542 221111 12338
Q ss_pred eccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 293 GVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 293 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
++.++++++....+...+....... ..+....|++.++|....+.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999887765432211 24567889999998775443
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.29 E-value=3.2e-05 Score=88.32 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=105.1
Q ss_pred ccccchhhHHHHHHHHHHhcC----CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMG----DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEI 214 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 214 (897)
.+++|+ ++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++. .++ ++-+..++..+...+ ..+
T Consensus 14 ~dlvg~--~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i-~~~ 84 (482)
T PRK04195 14 SDVVGN--EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVI-ERV 84 (482)
T ss_pred HHhcCC--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHH-HHH
Confidence 478998 6777788777753 226889999999999999999999986 132 233444443332222 222
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc------ccccccCCCCCCCCcEEEEEeCCch-hhc-c
Q 043332 215 AAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR------LEEVGIPEPSEENGCKLVITTRSLG-VCR-F 286 (897)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~------~~~~~~~~~~~~~gs~iivTTR~~~-v~~-~ 286 (897)
+...... ..+...++-+||+|+++.... +..+...+. ..+..||+|+.+.. ... .
T Consensus 85 i~~~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 2211110 001112567999999976421 222322222 22345666664421 111 1
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhh
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCM 346 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L 346 (897)
. .+..+.+.+++.++....+.+.+....... ..++...|++.++|....+......+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 123389999999999988887764432211 24677889999999887665443333
No 65
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.28 E-value=2.5e-06 Score=90.41 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=61.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC--CHHHHHHHHHHHHcCCCCCChhHH-----HHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL--DLIKLQNEIAAALNQSLPENEDEV-----RRAGR 234 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~ 234 (897)
....+|+|++|+||||||++||+... ..+|+.++||.+.+.. .+.+++++|...+-....+..... ..+-.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999974 2489999999998887 677888888632222221111111 11111
Q ss_pred HHHH-HhccCeEEEEEcCCCc
Q 043332 235 LSGM-LKAKAKFVLILDDMWK 254 (897)
Q Consensus 235 l~~~-l~~~~r~LlVlDdv~~ 254 (897)
..+. ...+++++|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 1122 2367899999999964
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=7.6e-07 Score=69.63 Aligned_cols=57 Identities=35% Similarity=0.476 Sum_probs=33.5
Q ss_pred CccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceeecccc
Q 043332 522 ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLLLRYC 579 (897)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~ 579 (897)
+|++|++++| .+..+|...|.++++|++|++++|.++.+| ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555566555 555555555566666666666666665553 34556666666666665
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2e-05 Score=89.07 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=105.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +..++.|..++..+.. ..+.++|++|+||||+|+.+++..... +.+....|.|.+... +......-+..
T Consensus 14 ~dvvGq--~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~-~~~~~~cg~C~sc~~-i~~~~h~dv~e 89 (504)
T PRK14963 14 DEVVGQ--EHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCLA-VRRGAHPDVLE 89 (504)
T ss_pred HHhcCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-CCCCCCCCcChhhHH-HhcCCCCceEE
Confidence 478997 6677778888877664 567999999999999999999987321 112222222211100 00000000000
Q ss_pred HcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeC-Cchhhccc--c
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTR-SLGVCRFM--D 288 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR-~~~v~~~~--~ 288 (897)
++.. .......+..+...+. .+++-++|+|+++.. ..+..+...+......+.+|++|. ...+.... .
T Consensus 90 l~~~---~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 90 IDAA---SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred eccc---ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000 0001111222222211 245668999999754 234444434432234445555554 34443222 2
Q ss_pred cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 289 CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 289 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
+..+++.+++.++....+.+.+..... ....+.+..|++.++|.+.-+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 334999999999999999887654321 112566788999999998654
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.3e-05 Score=90.66 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=105.8
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.++||. +..++.|..++..+. ...+.++|+.|+||||+|+.+++...... ++. ...++.-...+.|...
T Consensus 15 ddVIGQ--e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-------~~~-~~pCg~C~sC~~I~~g 84 (702)
T PRK14960 15 NELVGQ--NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET-------GVT-STPCEVCATCKAVNEG 84 (702)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-------CCC-CCCCccCHHHHHHhcC
Confidence 479998 677888888888776 46889999999999999999998762110 110 0011111111111110
Q ss_pred HcCCC----CCChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCc-hhhc-
Q 043332 218 LNQSL----PENEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSL-GVCR- 285 (897)
Q Consensus 218 l~~~~----~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~- 285 (897)
-.... .......+.++.+.... ..+++-++|+|++... .....+...+.....+.++|++|.+. .+..
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 00000 00000111222222221 1345668999999753 23333333333223456777777652 2211
Q ss_pred -ccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 286 -FMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 286 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
...+..+++.+++.++..+.+.+.+..... ....+....|++.++|.+..+..
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 122334999999999999998877654321 12245677899999998855443
No 69
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=7.5e-05 Score=80.90 Aligned_cols=199 Identities=17% Similarity=0.183 Sum_probs=124.0
Q ss_pred cccchhhHHHHHHHHHHh----cCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
.+.+| +++++++...| .+....-+.|+|..|+|||+.++.|...........+ +++|.+-...+..++...|+
T Consensus 18 ~l~~R--e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 18 ELPHR--EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccc--HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 47888 77777777655 3444455999999999999999999999854333333 78899988889999999999
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHh-ccCeEEEEEcCCCccccc-----cccccCCCCCCCCcEEE--EEeCCchhhc--
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLK-AKAKFVLILDDMWKEFRL-----EEVGIPEPSEENGCKLV--ITTRSLGVCR-- 285 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~~-----~~~~~~~~~~~~gs~ii--vTTR~~~v~~-- 285 (897)
.+++..........+....+.+.+. .++.+++|||+++.-..- -.+..... ..+++|+ ..+.+.....
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~--~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG--ENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc--ccceeEEEEEEeccHHHHHHh
Confidence 9997443333444455555555554 367899999999763221 12211111 1145444 3444433322
Q ss_pred ------ccccceEeccCCCHHHHHHHHHHhhhcc--ccccchhhHH-HHHHHHHHhCCChHHHHHHH
Q 043332 286 ------FMDCKEIGVELLSQEEALNLFLDKVRIS--TSQILNLDKE-IINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 286 ------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~-~~~~i~~~c~G~Plal~~~~ 343 (897)
..+...+..+|-+.+|-..++..++... .....+..-+ +|...++..|-.-.|+..+-
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 2233337889999999999998876432 1112333333 34444444444455665543
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.23 E-value=3.1e-05 Score=84.04 Aligned_cols=179 Identities=12% Similarity=0.171 Sum_probs=103.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe--CCCCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV--SQPLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~ 216 (897)
.+++|+ ++.++.+..++.....+.+.|+|..|+||||+|+.+++.... ..+. ..++.+ +.......+...+ .
T Consensus 17 ~~~~g~--~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~~~~~i-~ 90 (319)
T PRK00440 17 DEIVGQ--EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDVIRNKI-K 90 (319)
T ss_pred HHhcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHHHHHHH-H
Confidence 468998 678888888888777777899999999999999999998632 1221 122222 2222222111111 1
Q ss_pred HHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCCc-hhhccc--ccce
Q 043332 217 ALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRSL-GVCRFM--DCKE 291 (897)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~--~~~~ 291 (897)
.+....+ .....+-++++|+++... ....+...+......+.+|+++... .+.... .+..
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1110000 001234588999986532 2222322222223446677766432 221111 1223
Q ss_pred EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 292 IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 292 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
+++.++++++....+...+..... .-..+....+++.++|.+.-+..
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 889999999998888877654321 12255678899999998865433
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=9.9e-07 Score=68.96 Aligned_cols=59 Identities=37% Similarity=0.490 Sum_probs=31.8
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCC
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTD 557 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 557 (897)
+++.|++++|.+..++...+..+++|++|++++| .+..+++..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3455555555555555555555555555555554 4455555555555555555555554
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.7e-05 Score=87.65 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=103.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCC---------C-------------cE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNK---------F-------------NV 195 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---------f-------------~~ 195 (897)
.+++|. +..+..|...+..+. ...+.++|+.|+||||+|+.+++........ + .-
T Consensus 21 ~dliGq--~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQ--EVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 378997 667777777676665 4688999999999999999999986321100 0 00
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCC
Q 043332 196 VIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEE 269 (897)
Q Consensus 196 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~ 269 (897)
++.+.......+. .+..+.... ..+++-++|+|+++.. ..+..+...+....
T Consensus 99 v~eidaas~~~vd----------------------~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp 156 (507)
T PRK06645 99 IIEIDAASKTSVD----------------------DIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP 156 (507)
T ss_pred EEEeeccCCCCHH----------------------HHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC
Confidence 1111111111111 112222211 1245678999999863 33444443333333
Q ss_pred CCcEEEE-EeCCchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 270 NGCKLVI-TTRSLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 270 ~gs~iiv-TTR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
..+.+|+ ||+...+.... .+..+++.+++.++....+.+.+..... ....+....|++.++|.+.-+
T Consensus 157 ~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 4556554 55544543322 2334899999999999999887754321 112455677999999987544
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=3.4e-05 Score=84.44 Aligned_cols=171 Identities=12% Similarity=0.119 Sum_probs=99.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCC----------eeEEEEEcCCCchHHHHHHHHHHHHhhcc------------------
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK----------VTKIGVWGMGGIGKTTIMKEINNRLQKET------------------ 190 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------ 190 (897)
.+++|. +..++.|..++..+. ...+.++|+.|+|||++|+.++...-...
T Consensus 5 ~~IiGq--~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 5 DDLVGQ--EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhccCh--HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 368897 677788888887653 46788999999999999999988652111
Q ss_pred CCCcEEEEEEeC-CCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--ccccccc
Q 043332 191 NKFNVVIWVTVS-QPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGI 263 (897)
Q Consensus 191 ~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~ 263 (897)
.|.| +.++... ....+ +.++.+.+... .+++-++|+|+++... ....+..
T Consensus 83 ~hpD-~~~i~~~~~~i~i----------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk 139 (394)
T PRK07940 83 THPD-VRVVAPEGLSIGV----------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK 139 (394)
T ss_pred CCCC-EEEeccccccCCH----------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH
Confidence 0111 1111111 11111 12222322221 2445588889997642 2222322
Q ss_pred CCCCCCCCcEEEEEeCC-chhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 264 PEPSEENGCKLVITTRS-LGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 264 ~~~~~~~gs~iivTTR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
.+.....+..+|++|.+ ..+.... .+..+.+.+++.++..+.+.+..+.+ .+.+..++..++|.|....
T Consensus 140 ~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~--------~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVD--------PETARRAARASQGHIGRAR 211 (394)
T ss_pred HhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCC--------HHHHHHHHHHcCCCHHHHH
Confidence 22222345556665554 3443222 23449999999999998886443211 3457789999999997554
Q ss_pred HH
Q 043332 341 TV 342 (897)
Q Consensus 341 ~~ 342 (897)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 33
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.21 E-value=1.2e-05 Score=82.18 Aligned_cols=171 Identities=14% Similarity=0.156 Sum_probs=101.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcC
Q 043332 141 LAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQ 220 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 220 (897)
++| .-...+..+..+......+.+.|+|+.|+|||+|++++++.... ....+.++.+.....
T Consensus 25 ~~~-~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 25 YPG-DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred ccC-ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh--------------
Confidence 446 23445666666655555678999999999999999999998632 233466666533100
Q ss_pred CCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc---ccccccc-cCCCC-CCCC-cEEEEEeCCc---------hhhc
Q 043332 221 SLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE---FRLEEVG-IPEPS-EENG-CKLVITTRSL---------GVCR 285 (897)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~---~~~~~~~-~~~~~-~~~g-s~iivTTR~~---------~v~~ 285 (897)
....+.+.+. +.-+|++||+... ..|+... ..+.. ...| .++|+||+.. +...
T Consensus 87 ----------~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 87 ----------FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred ----------hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 0001112221 1238899999653 2333211 11110 1223 4799999853 2223
Q ss_pred ccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHh
Q 043332 286 FMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVAS 344 (897)
Q Consensus 286 ~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~ 344 (897)
++.+.. ++++++++++-.+++.+++.... -.-.+++..-|++.+.|..-++..+-.
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 343334 89999999999999887664321 122367788888888887766554433
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=9.2e-06 Score=89.42 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=104.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.++||. +..+..|..++..+.+ ..+.++|+.|+||||+|+.+++..... .... ...+..... ...|...
T Consensus 18 ~dvVGQ--e~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce--~~~~--~~pCg~C~s----C~~i~~g 87 (484)
T PRK14956 18 RDVIHQ--DLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE--NPIG--NEPCNECTS----CLEITKG 87 (484)
T ss_pred HHHhCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc--cccC--ccccCCCcH----HHHHHcc
Confidence 378997 6677888888887775 468999999999999999999976321 1100 000011111 1111111
Q ss_pred HcCCCC----CChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE-EeCCchhhcc
Q 043332 218 LNQSLP----ENEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI-TTRSLGVCRF 286 (897)
Q Consensus 218 l~~~~~----~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v~~~ 286 (897)
.....- ......+.+..+...+ ..+++-++|+|++... ..++.+...+........+|+ ||....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 110000 0000112222232222 1345669999999753 334444433332223444444 4444444322
Q ss_pred --cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 287 --MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 287 --~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
..+..|.+.+++.++..+.+.+.+..... .-..+....|++.++|.+.-+
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHH
Confidence 23444999999999998888876543321 112456788999999998544
No 76
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=6.9e-05 Score=87.37 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=91.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCC---cEEEEEEeCC---CCCHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQ---PLDLIKLQN 212 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~---~~~~~~~~~ 212 (897)
+.++|+ +..+..+...+.......+.|+|++|+||||+|+.+++.... ...+ ...-|+.+.. ..+...+..
T Consensus 154 ~~iiGq--s~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~-~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQ--ERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK-LKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeC--cHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh-ccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 368898 556667777776666678999999999999999999887522 2222 1234554432 122222221
Q ss_pred HHH---------------HHHcCCC----------------CC-ChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccc
Q 043332 213 EIA---------------AALNQSL----------------PE-NEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRL 258 (897)
Q Consensus 213 ~i~---------------~~l~~~~----------------~~-~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~ 258 (897)
.++ ...+... ++ ..-.......+.+.+ +.+++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L-e~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL-EDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH-hhCeEEeecceeccCCcccc
Confidence 111 1111000 00 000111233344444 345677776655543 335
Q ss_pred cccccCCCCCCCCcEEEE--EeCCchh-hccc--ccceEeccCCCHHHHHHHHHHhhhc
Q 043332 259 EEVGIPEPSEENGCKLVI--TTRSLGV-CRFM--DCKEIGVELLSQEEALNLFLDKVRI 312 (897)
Q Consensus 259 ~~~~~~~~~~~~gs~iiv--TTR~~~v-~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~ 312 (897)
+.+...+....+...|++ ||++... .... .+..+.+.+++.+|.+.++.+.+..
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 555444443344444555 5664332 1111 1223788999999999999887653
No 77
>PTZ00202 tuzin; Provisional
Probab=98.19 E-value=6.8e-05 Score=80.02 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=93.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCC---CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHH
Q 043332 134 LTLTTATLAGEKTKKVVERIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 134 ~~~~~~~~vGr~~~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 210 (897)
.|.+...|+|| +++...+...|.+. ..+++.|+|++|+|||||++.+.... . + ...++... +..++
T Consensus 257 lPa~~~~FVGR--eaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~-~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSR--EAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G-M-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCc--HHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C-c-eEEEECCC---CHHHH
Confidence 34445689999 77778887777542 35699999999999999999999764 1 1 12333333 67999
Q ss_pred HHHHHHHHcCCCCCChhHHHHHHHHHHHH----hc-cCeEEEEEcCCCccccccccc---cCCCCCCCCcEEEEEeCCch
Q 043332 211 QNEIAAALNQSLPENEDEVRRAGRLSGML----KA-KAKFVLILDDMWKEFRLEEVG---IPEPSEENGCKLVITTRSLG 282 (897)
Q Consensus 211 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~-~~r~LlVlDdv~~~~~~~~~~---~~~~~~~~gs~iivTTR~~~ 282 (897)
+..|+.+||.... ....+....+.+.+ .. +++.+||+-= .+-..+..+- ..+.....-|+|++---.+.
T Consensus 326 Lr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 326 LRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 9999999997432 22222333333322 23 6666666631 1111111100 01111134567776443333
Q ss_pred hhcccc----cceEeccCCCHHHHHHHHHHh
Q 043332 283 VCRFMD----CKEIGVELLSQEEALNLFLDK 309 (897)
Q Consensus 283 v~~~~~----~~~~~l~~L~~~ea~~Lf~~~ 309 (897)
+.-... -..|-+++++.++|.+.-.+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 321111 112788999999998876554
No 78
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=3.4e-06 Score=99.09 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=52.2
Q ss_pred ccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC-cCCcccccCcccceeeccccccccCCc-chhccccCCEeecc
Q 043332 523 LSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE-VLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLE 600 (897)
Q Consensus 523 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~ 600 (897)
++.|+|++|.....+|.. +.++++|+.|+|++|.+. .+|..++.+.+|++|+|++|.....+| .++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 445555555322333433 355555555555555554 455555555555555555554444455 45555555555555
Q ss_pred CCcCc-ccCccccCC-CCCCEEeCCCCC
Q 043332 601 ATRIE-EVPEGMEML-ENLSYLYLYSLP 626 (897)
Q Consensus 601 ~~~l~-~lp~~~~~l-~~L~~L~l~~~~ 626 (897)
+|.+. .+|..++.+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 55554 455544432 234455554443
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.7e-05 Score=86.25 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=102.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (897)
.++||. +.....|...+..+.+ ..+.++|++|+||||+|+.+++....... .+..+..+
T Consensus 14 ~divGq--~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQ--DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 479997 5566777777777765 56899999999999999999987521100 00012222
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVIT 277 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivT 277 (897)
..+...+...+. +|...... .-..+++-++|+|+++.- ...+.+...+........+|++
T Consensus 92 ~aa~~~gid~iR-~i~~~~~~-----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 92 DAASNRGIDEIR-KIRDAVGY-----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred eCcccCCHHHHH-HHHHHHhh-----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 322222222221 12111110 001245669999999753 2233333333322233444444
Q ss_pred eCC-chhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCC-hHHHHHHHhh
Q 043332 278 TRS-LGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGL-PLAIVTVASC 345 (897)
Q Consensus 278 TR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plal~~~~~~ 345 (897)
|.+ ..+.... .+..+.+.+++.++....+.+.+..... .-..+....|++.++|. +.|+..+-.+
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 443 3333222 2223899999999998888877643221 12245677788888655 5666555443
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.5e-05 Score=86.46 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=102.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (897)
.+++|. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++....... .|.-.+++
T Consensus 16 ~diiGq--~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQ--QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 378998 6777888888877654 56789999999999999999987521100 11112222
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE-
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI- 276 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv- 276 (897)
.......+.++ ++|+ ..+...-..+++-++|+|++... ...+.+...+......+.+|+
T Consensus 94 daas~~gvd~i-r~ii-----------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEET-KEIL-----------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHHH-HHHH-----------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 22121222111 1111 11111111345669999999753 233344433333234555554
Q ss_pred EeCCchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHHHH
Q 043332 277 TTRSLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIVTV 342 (897)
Q Consensus 277 TTR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~~~ 342 (897)
||....+.... .+..+++.+++.++....+.+.+.... .....+....|++.++|.+. |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg---i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN---INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44433333222 233499999999998888877554321 11224556778999999764 44444
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.15 E-value=4.7e-05 Score=78.03 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=99.8
Q ss_pred HHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHH
Q 043332 153 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRA 232 (897)
Q Consensus 153 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 232 (897)
|...+.++.++-+.+||++|+||||||+.++.... .+- ..||..|....-..-.+.|.++-..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk---~~S--yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK---KHS--YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC---CCc--eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 44566778889999999999999999999999752 221 5677777654433334444332211
Q ss_pred HHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE--EeCCchhh----cccccceEeccCCCHHHHHH
Q 043332 233 GRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI--TTRSLGVC----RFMDCKEIGVELLSQEEALN 304 (897)
Q Consensus 233 ~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv--TTR~~~v~----~~~~~~~~~l~~L~~~ea~~ 304 (897)
.....++|.+|.+|.|..- .+-+.+ +|.-.+|.-++| ||.+.... -...|..+.|++|..++-..
T Consensus 216 ----~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~ 288 (554)
T KOG2028|consen 216 ----EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVT 288 (554)
T ss_pred ----HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHH
Confidence 1112467899999999643 222222 333367876665 77765442 22334448999999999999
Q ss_pred HHHHhhh---cccc---ccch----hhHHHHHHHHHHhCCChH
Q 043332 305 LFLDKVR---ISTS---QILN----LDKEIINSVVEECAGLPL 337 (897)
Q Consensus 305 Lf~~~~~---~~~~---~~~~----~~~~~~~~i~~~c~G~Pl 337 (897)
++.+... .... ..+. -...+..-++..|+|-..
T Consensus 289 iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 289 ILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 9987432 1111 1111 123466677778888764
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.14 E-value=3.5e-05 Score=75.34 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=86.0
Q ss_pred ccccchhhHHHHHHHH---HHhc--CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIW---EDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~---~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
.++||. +..++.+. +... ++.+.-+.+||++|+||||||..++++.. ..| .+++...-....++ ..
T Consensus 24 ~efiGQ--~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---~~~---~~~sg~~i~k~~dl-~~ 94 (233)
T PF05496_consen 24 DEFIGQ--EHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG---VNF---KITSGPAIEKAGDL-AA 94 (233)
T ss_dssp CCS-S---HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----E---EEEECCC--SCHHH-HH
T ss_pred HHccCc--HHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC---CCe---EeccchhhhhHHHH-HH
Confidence 489997 44444432 2222 34577889999999999999999999862 233 23332211111111 11
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---------cccccccCC-CCCCCC-----------c
Q 043332 214 IAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---------RLEEVGIPE-PSEENG-----------C 272 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---------~~~~~~~~~-~~~~~g-----------s 272 (897)
+ ...+ +++-+|.+|++..-. ..++....+ ...+.+ +
T Consensus 95 i---------------------l~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 95 I---------------------LTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp H---------------------HHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred H---------------------HHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1 1112 234467778875321 011111100 011111 2
Q ss_pred EEEEEeCCchhhcccccce---EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhh
Q 043332 273 KLVITTRSLGVCRFMDCKE---IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASC 345 (897)
Q Consensus 273 ~iivTTR~~~v~~~~~~~~---~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~ 345 (897)
-|=.|||...+..-..... .+++..+.+|-.++..+.+..-. .+-.++.+.+|+++|.|-|.-+.-+-+.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2336888765544333322 57999999999999987664322 1223678899999999999655444333
No 83
>PRK09087 hypothetical protein; Validated
Probab=98.13 E-value=2.2e-05 Score=79.52 Aligned_cols=141 Identities=11% Similarity=0.078 Sum_probs=85.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK 240 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (897)
..+.+.|+|..|+|||+|++.++.... ..+++.. .+..++. ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~~---------------------~~~~ 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDAA---------------------NAAA 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHHH---------------------Hhhh
Confidence 346799999999999999999887641 1133221 1111111 1111
Q ss_pred ccCeEEEEEcCCCccc-cccccccCCC-CCCCCcEEEEEeCC---------chhhcccccce-EeccCCCHHHHHHHHHH
Q 043332 241 AKAKFVLILDDMWKEF-RLEEVGIPEP-SEENGCKLVITTRS---------LGVCRFMDCKE-IGVELLSQEEALNLFLD 308 (897)
Q Consensus 241 ~~~r~LlVlDdv~~~~-~~~~~~~~~~-~~~~gs~iivTTR~---------~~v~~~~~~~~-~~l~~L~~~ea~~Lf~~ 308 (897)
+ -+|++||+.... .-+++...+. -...|..||+|++. .+...++.+.. ++++++++++-.+++.+
T Consensus 88 ~---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 E---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred c---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1 278889996431 1111211111 01346779998874 23333344444 89999999999999998
Q ss_pred hhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 309 KVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
++....- .--+++..-|++.+.|..-++..+
T Consensus 165 ~~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 165 LFADRQL---YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHcCC---CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 8754321 222677888999988887776543
No 84
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=4e-06 Score=98.53 Aligned_cols=99 Identities=24% Similarity=0.393 Sum_probs=67.1
Q ss_pred ccEEEecCCCCC-cCCcccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCc-ccCccccCCCCCCEEeCCC
Q 043332 548 LKVLNLSHTDIE-VLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIE-EVPEGMEMLENLSYLYLYS 624 (897)
Q Consensus 548 Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~ 624 (897)
++.|+|++|.+. .+|..++.+.+|+.|+|++|.....+| .++.+++|++|++++|++. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667777777776 667777777777777777775555677 5777777777777777776 5677777777777777777
Q ss_pred CCCC-cCCCCcccC-CcccCeEecc
Q 043332 625 LPLK-KFPTGILPR-LRDLYKLKLS 647 (897)
Q Consensus 625 ~~~~-~~~~~~l~~-l~~L~~L~l~ 647 (897)
|.+. .+|.. ++. +.++..+++.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~ 523 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFT 523 (623)
T ss_pred CcccccCChH-HhhccccCceEEec
Confidence 7755 34443 232 2344455444
No 85
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=9.1e-05 Score=80.41 Aligned_cols=195 Identities=12% Similarity=0.049 Sum_probs=106.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccC-CCc-EEEEEEeCCCCCHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFN-VVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~-~~~wv~vs~~~~~~~~~~~i~ 215 (897)
.+++|. +...+.|.+.+..+. ...+.++|+.|+||+|+|..++...-.... ..+ +..-.............+.|.
T Consensus 19 ~~iiGq--~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGH--AAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 379997 677788888887776 457999999999999999999887632110 000 000000000000001111111
Q ss_pred HHHcCC-------CCC------ChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEE
Q 043332 216 AALNQS-------LPE------NEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVI 276 (897)
Q Consensus 216 ~~l~~~-------~~~------~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iiv 276 (897)
..-..+ ..+ ..-..+.++.+.+.+. .+.+-++|+|+++... ....+...+.....++.+|+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 110000 000 1112334555554442 2456789999997542 22333322222234556666
Q ss_pred EeCCc-hhhc--ccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 277 TTRSL-GVCR--FMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 277 TTR~~-~v~~--~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+|.+. .+.. ...+..+.+.+++.++..+++........ .+....++..++|.|..+..+
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 66654 3321 12344499999999999999977542211 122267899999999866554
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.7e-05 Score=84.30 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=104.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCee-EEEEEcCCCchHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVT-KIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 199 (897)
.++||. +..++.|.+.+..+.+. .+.++|+.|+||||+|+.++....... +.+.-++.+
T Consensus 13 ~dliGQ--e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQ--DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 479997 66777777777777654 899999999999999999987541110 011112333
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVIT 277 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivT 277 (897)
..+...++.++. +|....... -. .+++-++|+|++... ...+.+...+......+++|++
T Consensus 91 daas~~~vddIR-~Iie~~~~~----------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDDIK-VILENSCYL----------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHHHH-HHHHHHHhc----------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 333333333322 122111100 00 234568999998653 2233343333322345666665
Q ss_pred eC-Cchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 278 TR-SLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 278 TR-~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
|. ...+.... .+..+.+.+++.++....+.+.+..... .-..+....|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 53 34443322 2333899999999999998887654322 122456678999999887543
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=4.1e-05 Score=88.13 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=105.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.++||. +..++.|...+..+.+ ..+.++|..|+||||+|+.+++....... + ....+........|...
T Consensus 16 ~divGQ--e~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~-------~~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQ--EHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG-I-------TATPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC-C-------CCCCCCCCHHHHHHHcC
Confidence 479998 6777888888877664 56789999999999999999987632110 0 00111111122222110
Q ss_pred HcCCC---C-CChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeC-Cchhhcc
Q 043332 218 LNQSL---P-ENEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTR-SLGVCRF 286 (897)
Q Consensus 218 l~~~~---~-~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR-~~~v~~~ 286 (897)
-.... . ......+.++.+...+ ..+++-++|+|++... ...+.+...+.......++|++|. ...+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 00000 0 0001112222332222 1356679999999753 233333322222233455555444 4444321
Q ss_pred --cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 287 --MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 287 --~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
..+..|.+.+++.++....+.+.+..... ....+....|++.++|.+..+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22444999999999999998876643211 112455678999999988644433
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.8e-05 Score=87.91 Aligned_cols=176 Identities=14% Similarity=0.171 Sum_probs=102.8
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (897)
.++||. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++....... .|--++.+
T Consensus 16 ddIIGQ--e~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQ--EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 379998 7788888888887764 57899999999999999999887521100 01011122
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH----hccCeEEEEEcCCCcccc--ccccccCCCCCCCCcE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML----KAKAKFVLILDDMWKEFR--LEEVGIPEPSEENGCK 273 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~~~--~~~~~~~~~~~~~gs~ 273 (897)
..+....+. .++.+.... ..+++-++|+|++..... ...+...+......++
T Consensus 94 daAs~~gVd----------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 94 DAASNTGID----------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred eccccCCHH----------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 222211111 122222111 124556899999975321 2223322222234556
Q ss_pred EEEEeCCc-hhhcc--cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 274 LVITTRSL-GVCRF--MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 274 iivTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
+|++|.+. .+... ..+..+.+.+++.++....+.+.+..... .-..+....|++.++|.+.-+..
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHHH
Confidence 77666542 22211 12233889999999999998877654321 12245678899999998854443
No 89
>PRK08727 hypothetical protein; Validated
Probab=98.10 E-value=3.1e-05 Score=79.19 Aligned_cols=167 Identities=13% Similarity=0.146 Sum_probs=96.3
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
+|++.+ ...+..+.....+.....+.|+|..|+|||.|++++++... .. ...+.|+++.+ ....+.
T Consensus 20 ~f~~~~-~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~-~~--~~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 20 SYIAAP-DGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE-QA--GRSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hccCCc-HHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH-Hc--CCcEEEEeHHH------hhhhHH----
Confidence 455432 23444443333344446799999999999999999999863 22 23456665322 111111
Q ss_pred CCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---cccccccCCCC--CCCCcEEEEEeCCc---------hhhc
Q 043332 220 QSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---RLEEVGIPEPS--EENGCKLVITTRSL---------GVCR 285 (897)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~~~~~~~~~~--~~~gs~iivTTR~~---------~v~~ 285 (897)
...+.+ .+.-+||+||+.... .+......+.. ...|..||+||+.. ++..
T Consensus 86 --------------~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 86 --------------DALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred --------------HHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 112222 123489999996431 22211111111 13466799999852 2222
Q ss_pred ccccc-eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 286 FMDCK-EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 286 ~~~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
++... .+++++++.++-..++.+++.... -.-.+++...|++.++|..-++
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~---l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRG---LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCCCHHHH
Confidence 22223 389999999999999998764321 1222567778888888776555
No 90
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.09 E-value=1.4e-05 Score=79.01 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=32.8
Q ss_pred cccchhhHHHHHHHHHHh---cCCCeeEEEEEcCCCchHHHHHHHHHHHHhh
Q 043332 140 TLAGEKTKKVVERIWEDL---MGDKVTKIGVWGMGGIGKTTIMKEINNRLQK 188 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 188 (897)
.|||| +++++++...+ .....+.+.|+|.+|+|||+|+++++.....
T Consensus 1 ~fvgR--~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGR--EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT---HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999 88999999988 2345799999999999999999999998843
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.09 E-value=7.6e-05 Score=73.82 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=89.8
Q ss_pred HHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------CCCcEEEEEEe-CCCCCHHHH
Q 043332 152 RIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIWVTV-SQPLDLIKL 210 (897)
Q Consensus 152 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v-s~~~~~~~~ 210 (897)
.+.+.+..+++ ..+.++|+.|+||||+|+.+........ .+.|. .++.. ......+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 34555656655 6799999999999999999988863210 11122 12211 111111111
Q ss_pred HHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCc-hhhccc
Q 043332 211 QNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSL-GVCRFM 287 (897)
Q Consensus 211 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~ 287 (897)
+++...+... -..+.+-++|+||+... ...+.+...+......+.+|++|++. .+....
T Consensus 82 -~~i~~~~~~~-----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 -RELVEFLSRT-----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred -HHHHHHHccC-----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 1122211110 00244668999998653 22333433333333456677666643 222211
Q ss_pred --ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHH
Q 043332 288 --DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLA 338 (897)
Q Consensus 288 --~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 338 (897)
.+..+.+.+++.++..+.+.+. + . .++.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g--i------~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G--I------SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C--C------CHHHHHHHHHHcCCCccc
Confidence 1223899999999998888766 2 1 145688899999999853
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.08 E-value=0.00011 Score=81.10 Aligned_cols=180 Identities=12% Similarity=0.182 Sum_probs=104.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------CCCcEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIW 198 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~w 198 (897)
.+++|. ++.++.+.+++..+.. ..+.++|+.|+||||+|+.++....... .+++. ++
T Consensus 14 ~~iig~--~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 14 EDVIGQ--EHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 478998 7788888888877664 5788999999999999999988752110 12222 22
Q ss_pred EEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE
Q 043332 199 VTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI 276 (897)
Q Consensus 199 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv 276 (897)
+..+....... .+++...+... .. .+++-++|+|+++.. .....+...+......+.+|+
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~----------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYA----------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcC----------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 22221111111 11222211100 01 234458899998653 223333333332234566666
Q ss_pred EeCCch-hhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 277 TTRSLG-VCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 277 TTR~~~-v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+|.+.. +.... .+..+++.++++++..+.+...+..... .-..+.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 665433 22211 1223888999999999888876643321 112467788999999998665444
No 93
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1e-05 Score=86.45 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=63.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC--CCHHHHHHHHHHHHcCCCCCChhHH-----HH-H
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQNEIAAALNQSLPENEDEV-----RR-A 232 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~-~ 232 (897)
....++|+|++|+|||||++.+++... ..+|+..+||.+.+. .++.++++.|...+-....+..... .. .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 346799999999999999999999873 348999999998866 7889999998544322221111111 11 1
Q ss_pred HHHHHHHhccCeEEEEEcCCCc
Q 043332 233 GRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 233 ~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
........++++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 1122233368999999999964
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.2e-05 Score=85.48 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=102.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhcc------------------CCCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 199 (897)
.++||. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++...... +.|.-++.+
T Consensus 16 ~divGq--~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQ--APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCC--HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 379998 7788888888877664 5678999999999999999998763211 011112223
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVIT 277 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivT 277 (897)
..+....++++. +++..+.. .-..++.-++|+|++... .....+...+......+++|++
T Consensus 94 daas~~~v~~iR-~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAASRTKVEDTR-ELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cccccCCHHHHH-HHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 222222222221 12221111 011345668999999763 2333333333322345666665
Q ss_pred eCC-chhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 278 TRS-LGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 278 TR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
|.+ ..+.... .+..+++.+++.++....+.+.+..... ....+....|++.++|.+.-+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 543 3332111 1233889999999888777666543321 11234567788899998854433
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.05 E-value=4e-05 Score=90.16 Aligned_cols=171 Identities=18% Similarity=0.277 Sum_probs=94.9
Q ss_pred ccccchhhHHHH---HHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 139 ATLAGEKTKKVV---ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 139 ~~~vGr~~~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
.+++|+ +..+ ..+...+..+...-+.++|++|+||||+|+.+++... ..|. .+..+. ....++ ++
T Consensus 28 dd~vGQ--e~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~---~~f~---~lna~~-~~i~di-r~-- 95 (725)
T PRK13341 28 EEFVGQ--DHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR---AHFS---SLNAVL-AGVKDL-RA-- 95 (725)
T ss_pred HHhcCc--HHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc---Ccce---eehhhh-hhhHHH-HH--
Confidence 368897 3333 3455667777777789999999999999999998752 3331 111110 011111 01
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHh-ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEE--eCCch--hhccc-
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLK-AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVIT--TRSLG--VCRFM- 287 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivT--TR~~~--v~~~~- 287 (897)
.+......+. .+++.+||+||++.- ...+.+...+ ..|+.++++ |.+.. +....
T Consensus 96 ---------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 96 ---------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ---------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 1111111111 245679999999753 3333343222 345555553 33321 11111
Q ss_pred -ccceEeccCCCHHHHHHHHHHhhhccc----cccchhhHHHHHHHHHHhCCChHHH
Q 043332 288 -DCKEIGVELLSQEEALNLFLDKVRIST----SQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 288 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.+..+.+++++.++...++.+.+.... .....-.++....|++.+.|....+
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 122389999999999999987664210 0011223556678888888875443
No 96
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=6.4e-07 Score=100.50 Aligned_cols=102 Identities=26% Similarity=0.407 Sum_probs=62.9
Q ss_pred hCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeC
Q 043332 543 VHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYL 622 (897)
Q Consensus 543 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 622 (897)
..+++|.+|++.+|.|..+...+..+.+|++|++++| .++.+..+..+..|+.|++.+|.|..+ .++..+.+|+.+++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISDI-SGLESLKSLKLLDL 169 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchhc-cCCccchhhhcccC
Confidence 4556666666666666665544566666677777665 556666666666666677766666655 24444666666677
Q ss_pred CCCCCCcCCC-CcccCCcccCeEecc
Q 043332 623 YSLPLKKFPT-GILPRLRDLYKLKLS 647 (897)
Q Consensus 623 ~~~~~~~~~~-~~l~~l~~L~~L~l~ 647 (897)
++|.+..+.. . +..+.+|..+.+.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLG 194 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhcc
Confidence 6666666544 1 2455566666555
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00011 Score=84.35 Aligned_cols=194 Identities=13% Similarity=0.151 Sum_probs=105.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCC-CcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNK-FNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
.++||. +..++.|.+++..+.+ ..+.++|..|+||||+|+.+++........ ...... ..++.......|..
T Consensus 16 ~dviGQ--e~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQ--EHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 478997 7788888888887764 677999999999999999998875211000 000000 01111112222210
Q ss_pred HHcCCC---C-CChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCC-chhhc
Q 043332 217 ALNQSL---P-ENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRS-LGVCR 285 (897)
Q Consensus 217 ~l~~~~---~-~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~ 285 (897)
.-.... . ......+.++.+..... .++.-++|||+|+.. ...+.+...+......+++|++|.+ ..+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 000000 0 00011122223332221 234558899999863 2334444333322345566655543 33321
Q ss_pred c--cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 286 F--MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 286 ~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
. ..+..+.+.+++.++....+.+.+..... ....+....|++.++|.+.-+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 12344999999999999998877654321 11245677889999998755444
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=9.6e-05 Score=84.52 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=100.8
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (897)
.+++|. +..++.+..++..+.+ ..+.++|+.|+||||+|+.++........ .|.-++++
T Consensus 16 ~divGq--~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQ--EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 478998 6777888888877664 56789999999999999999887621110 01111222
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCK 273 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~ 273 (897)
..+....+. .++.+..... .+++-++|+|+++... ....+...+......+.
T Consensus 94 ~~~~~~~vd----------------------~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 94 DAASNTQVD----------------------AMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eccccCCHH----------------------HHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 221111111 1222222211 2456699999997542 23333333332234555
Q ss_pred EEEEeCC-chhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 274 LVITTRS-LGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 274 iivTTR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
+|++|.+ ..+.... .+..+++.+++.++....+.+.+..... ....+....|++.++|.+.-+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 6655543 3332211 1333899999999999888776643221 112455677899999987533
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8.1e-05 Score=82.61 Aligned_cols=197 Identities=12% Similarity=0.163 Sum_probs=106.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE-eCCCCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~ 216 (897)
.+++|. +..++.|..++.++.+ ..+.++|+.|+||||+|+.+++..... ..+....|.. +...++.-.....+..
T Consensus 16 ~eiiGq--~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQ--EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccCh--HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhc
Confidence 478997 6777888888887665 468899999999999999999886321 1111111110 0111111111111111
Q ss_pred HHcCCC---CC-ChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEe-CCchhhc
Q 043332 217 ALNQSL---PE-NEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITT-RSLGVCR 285 (897)
Q Consensus 217 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v~~ 285 (897)
....+. .. .....+.+..+...+. .+.+-++|+|++... ..++.+...+......+.+|++| +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 100000 00 0011122222333221 234568899998754 23444443333333456666555 4344432
Q ss_pred ccc--cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 286 FMD--CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 286 ~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
... +..+++.++++++....+...+.... ..-..+.+..+++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 22389999999999888877664321 112256788899999998854433
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.02 E-value=8.6e-05 Score=74.92 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=92.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
...+.|+|..|+|||.|.+++++..... ..-..+++++ ..++...+...+... ....+...+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh-
Confidence 4568999999999999999999987432 2223466664 445556666555431 1122334442
Q ss_pred cCeEEEEEcCCCccc---cccc-cccCCC-CCCCCcEEEEEeCCchh---------hcccccce-EeccCCCHHHHHHHH
Q 043332 242 KAKFVLILDDMWKEF---RLEE-VGIPEP-SEENGCKLVITTRSLGV---------CRFMDCKE-IGVELLSQEEALNLF 306 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~---~~~~-~~~~~~-~~~~gs~iivTTR~~~v---------~~~~~~~~-~~l~~L~~~ea~~Lf 306 (897)
. -=+|++||++... .|++ +...+. -...|.+||+|++.... ..++.... +++++.++++-.+++
T Consensus 97 ~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 S-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp T-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred c-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 2 3388999997532 2222 111111 01356689999965322 22233333 899999999999999
Q ss_pred HHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 307 LDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
.+++..... .-.++++.-|++.+.+..-.+..+
T Consensus 176 ~~~a~~~~~---~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 176 QKKAKERGI---ELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHhCC---CCcHHHHHHHHHhhcCCHHHHHHH
Confidence 988765432 123567777888777666555443
No 101
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.01 E-value=1.3e-05 Score=84.54 Aligned_cols=292 Identities=19% Similarity=0.189 Sum_probs=172.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+.+.++|.|||||||++-++.+ .. ..+-+.+.+|....-.+...+.......++.......+.. ..+...+ .
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~---~~~~~~~-~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAV---DTLVRRI-G 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchHHH---HHHHHHH-h
Confidence 57899999999999999999998 42 2333567777777766777777666666766544333222 1223333 4
Q ss_pred cCeEEEEEcCCCcccc-ccccccCCCCCCCCcEEEEEeCCchhhcccccceEeccCCCHH-HHHHHHHHhhhccccc--c
Q 043332 242 KAKFVLILDDMWKEFR-LEEVGIPEPSEENGCKLVITTRSLGVCRFMDCKEIGVELLSQE-EALNLFLDKVRISTSQ--I 317 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~-~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~~~--~ 317 (897)
.+|.++|+||..+..+ -..+...+..+...-.|+.|+|...... +..+..+.+|+.. ++.++|...+...... .
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 6789999999865321 1111112222233446888888654322 1122677777764 7899987765433221 2
Q ss_pred chhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHH----HHhhccccCCCchhhhhhhhhhhccCCCchhhH
Q 043332 318 LNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALN----ELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQ 393 (897)
Q Consensus 318 ~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~----~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k 393 (897)
.........+|.++.+|.|++|...+...+.-. ..+-...++ .+.+-...-........+.+.+||.-|. .-.+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt-gwe~ 242 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT-GWER 242 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh-hHHH
Confidence 233456788899999999999999988777632 222211111 1221111001223467788999999998 5667
Q ss_pred HHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHHHHHHHHHHccccccccC--CCeEEehHHHHHHHHhh
Q 043332 394 QCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILNRLVNCCLLESAKD--GRCVKMHDLIRDMALSI 471 (897)
Q Consensus 394 ~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~--~~~~~mHdlv~d~a~~~ 471 (897)
--|--++.|...|.-. ...|.+.|=... .........+..+++.+++.-.+. ...|+.-+-++.|+..+
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7788888887776543 233444432210 112334445666777777654332 23455555566666554
Q ss_pred hc
Q 043332 472 TS 473 (897)
Q Consensus 472 ~~ 473 (897)
-.
T Consensus 314 L~ 315 (414)
T COG3903 314 LH 315 (414)
T ss_pred HH
Confidence 43
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00018 Score=77.76 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=107.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccC-CCcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
..++|. ++..+.+...+..+. ...+.|+|+.|+||||+|..+++..-.... .+... .....++.....+.|..
T Consensus 23 ~~l~Gh--~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 23 TRLFGH--EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 378997 777888888887766 457999999999999999999998632100 01111 00111111122233322
Q ss_pred HHc-------CCCCC------ChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcE-EEE
Q 043332 217 ALN-------QSLPE------NEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCK-LVI 276 (897)
Q Consensus 217 ~l~-------~~~~~------~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~-iiv 276 (897)
.-. ..... ..-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+.. |++
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 110 00000 1111233445554443 3456799999998642 22223222221123344 445
Q ss_pred EeCCchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHH
Q 043332 277 TTRSLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 277 TTR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~ 343 (897)
|++...+.... .+..+.+.+++.++..+++....... . ...+.+..+++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54443332211 23349999999999999998742111 1 124456789999999998665443
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=0.00011 Score=82.27 Aligned_cols=186 Identities=14% Similarity=0.132 Sum_probs=107.7
Q ss_pred ccchhhHHHHHHHHHHhcCC--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 141 LAGEKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
++|..-+........+.... ...-+.|+|..|+|||+|++++++..... ..-..+++++ ..++...+...+
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~~~v~yv~------~~~f~~~~~~~l 190 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESN-FSDLKVSYMS------GDEFARKAVDIL 190 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEE------HHHHHHHHHHHH
Confidence 45643222333333333332 23568999999999999999999976322 2223445554 345666666655
Q ss_pred cCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---cc-cccccCCCC-CCCCcEEEEEeCCch---------hh
Q 043332 219 NQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---RL-EEVGIPEPS-EENGCKLVITTRSLG---------VC 284 (897)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTTR~~~---------v~ 284 (897)
+... .......+.+. ..-+||+||+.... .+ +.+...+.. ...|..||+|+.... +.
T Consensus 191 ~~~~-------~~~~~~~~~~~--~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 191 QKTH-------KEIEQFKNEIC--QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHhh-------hHHHHHHHHhc--cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 4310 11223333332 24488999996431 12 222211110 134557888876432 22
Q ss_pred cccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHH
Q 043332 285 RFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 285 ~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~ 343 (897)
.++.+.. +.+++++.++-.+++.+++..... ...-.+++..-|++.++|.|..+..+.
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl-~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI-KQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 2233333 789999999999999988754321 012336788999999999998776554
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00015 Score=80.09 Aligned_cols=178 Identities=7% Similarity=0.161 Sum_probs=99.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhc-----cCCCcEE-EEEEeCCCCCHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKE-----TNKFNVV-IWVTVSQPLDLIKLQ 211 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~vs~~~~~~~~~ 211 (897)
.+++|. +..++.+.+++..+.. +.+.++|+.|+||||+|+.+++..... ...|... +.+......+..++
T Consensus 17 ~~iig~--~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i- 93 (367)
T PRK14970 17 DDVVGQ--SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI- 93 (367)
T ss_pred HhcCCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-
Confidence 478998 6778888888877664 588999999999999999998875321 0112111 11111111111111
Q ss_pred HHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEe-CCchhhccc-
Q 043332 212 NEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITT-RSLGVCRFM- 287 (897)
Q Consensus 212 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTT-R~~~v~~~~- 287 (897)
.++++.+... .. .+++-++|+|++.... .+..+...+......+.+|++| +...+....
T Consensus 94 ~~l~~~~~~~----------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 94 RNLIDQVRIP----------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHhhc----------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1122111100 01 1345589999986532 2333322222222344555554 333332211
Q ss_pred -ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 288 -DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 288 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.+..+++.++++++....+...+..... .-..+.+..+++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 1223899999999999888876643321 112467788888999876543
No 105
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00014 Score=82.65 Aligned_cols=191 Identities=12% Similarity=0.129 Sum_probs=101.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|+ +..++.+.+++..+. .+.+.++|+.|+||||+|+.+++..... . |... ..++.....+.+...
T Consensus 16 ~dIIGQ--e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-~------~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 16 KQIIGQ--ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-N------PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-C------CCCC-CCCcccHHHHHHHcC
Confidence 478998 777888888887665 4578899999999999999999876211 1 1110 011111111111111
Q ss_pred HcCCC---C-CChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEe-CCchhhcc
Q 043332 218 LNQSL---P-ENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITT-RSLGVCRF 286 (897)
Q Consensus 218 l~~~~---~-~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTT-R~~~v~~~ 286 (897)
..... . ......+.++.+..... .+++-++|+|+++.. ..+..+...+.....++.+|++| ....+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 00000 0 00001111222222111 123446999998753 23333333222223345555444 43333221
Q ss_pred --cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHHHH
Q 043332 287 --MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIVTV 342 (897)
Q Consensus 287 --~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~~~ 342 (897)
..+..+++.+++.++....+...+..... .-..+.+..+++.++|.+. |+..+
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 12334899999999999888876643321 1124557789999999764 44333
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=97.94 E-value=0.00016 Score=73.91 Aligned_cols=151 Identities=16% Similarity=0.217 Sum_probs=89.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
...+.|+|..|+|||.|++++++.... .-..++|++..+ +... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~------~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAE------LLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHH------HHhh------------------hHHHHHhhhh
Confidence 367899999999999999999987632 123467776432 1111 0122333321
Q ss_pred cCeEEEEEcCCCcc---ccccc-cccCCCC-CCCCcEEEEEeCCchh---------hcccccce-EeccCCCHHHHHHHH
Q 043332 242 KAKFVLILDDMWKE---FRLEE-VGIPEPS-EENGCKLVITTRSLGV---------CRFMDCKE-IGVELLSQEEALNLF 306 (897)
Q Consensus 242 ~~r~LlVlDdv~~~---~~~~~-~~~~~~~-~~~gs~iivTTR~~~v---------~~~~~~~~-~~l~~L~~~ea~~Lf 306 (897)
. . +||+||+... ..|+. +...+.. ...|..||+|++...- ..++.... ++++++++++-.+++
T Consensus 98 ~-d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 98 Y-E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred C-C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 1 2 7889999632 23332 2211110 1346678888875322 12222233 889999999999999
Q ss_pred HHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHh
Q 043332 307 LDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVAS 344 (897)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~ 344 (897)
+.++.... -.-.+++..-|++.+.|..-++..+-.
T Consensus 176 ~~ka~~~~---~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 176 QLRASRRG---LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHcC---CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 86654321 112257778888888887766554433
No 107
>PF14516 AAA_35: AAA-like domain
Probab=97.93 E-value=0.0033 Score=67.95 Aligned_cols=198 Identities=13% Similarity=0.161 Sum_probs=110.6
Q ss_pred cccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-----CCHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LDLIKLQN 212 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~ 212 (897)
+...|+|. ..-+++.+.+.+. ...+.|.|+-.+|||+|..++.+.... ..+ ..+++++..- .+...+.+
T Consensus 10 ~~~Yi~R~--~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~--~~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 10 SPFYIERP--PAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ--QGY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCcccCch--HHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH--CCC-EEEEEEeecCCCcccCCHHHHHH
Confidence 34567884 2334555566543 468899999999999999999988732 233 3557765441 34566666
Q ss_pred HHHHHHcCCCCCCh-----------hHHHHHHHHHHHHh--ccCeEEEEEcCCCccccc----cccccCC----------
Q 043332 213 EIAAALNQSLPENE-----------DEVRRAGRLSGMLK--AKAKFVLILDDMWKEFRL----EEVGIPE---------- 265 (897)
Q Consensus 213 ~i~~~l~~~~~~~~-----------~~~~~~~~l~~~l~--~~~r~LlVlDdv~~~~~~----~~~~~~~---------- 265 (897)
.++..+.....-.. .......-+.+.++ .+++.+|++|+|+..... .++...+
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 66555543321110 00111111222222 257999999999753221 1111110
Q ss_pred CCCCCCcEEEEEeCCchhhccc-----ccc-eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 266 PSEENGCKLVITTRSLGVCRFM-----DCK-EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 266 ~~~~~gs~iivTTR~~~v~~~~-----~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
+....=+-|++.+......... ... .+.|++++.+|...|..+.-. . .. ....++|...+||+|.-+
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~-~---~~---~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL-E---FS---QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc-c---CC---HHHHHHHHHHHCCCHHHH
Confidence 0001111222222111111111 111 288999999999999876521 1 11 223888999999999999
Q ss_pred HHHHhhhcC
Q 043332 340 VTVASCMRG 348 (897)
Q Consensus 340 ~~~~~~L~~ 348 (897)
..++..+..
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999999866
No 108
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.5e-07 Score=89.38 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=29.5
Q ss_pred ccceeeccccccccC--Cc-chhccccCCEeeccCCcCcc-cCccccCCCCCCEEeCCCCC
Q 043332 570 NLRSLLLRYCLRLRR--VP-SVAKLLALHYLDLEATRIEE-VPEGMEMLENLSYLYLYSLP 626 (897)
Q Consensus 570 ~L~~L~L~~~~~~~~--lp-~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~ 626 (897)
.|++|||++. .++. +- -+..+.+|+.|.+.++++.. +...|.+-.+|+.|+++.|+
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 3667777653 2221 11 24555666666666665542 33345555566666666554
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.91 E-value=0.00013 Score=74.75 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcC-CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCC
Q 043332 147 KKVVERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPEN 225 (897)
Q Consensus 147 ~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 225 (897)
+..+..+.++... ...+.+.|+|..|+|||+||+.+++.... .. ....+++..... ..+
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~------~~~----------- 85 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPL------LAF----------- 85 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhH------HHH-----------
Confidence 3445555555442 33567899999999999999999998622 12 234445433211 000
Q ss_pred hhHHHHHHHHHHHHhccCeEEEEEcCCCccccc--cccccCCCC-CCCCc-EEEEEeCCchhhc--------ccc-cceE
Q 043332 226 EDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRL--EEVGIPEPS-EENGC-KLVITTRSLGVCR--------FMD-CKEI 292 (897)
Q Consensus 226 ~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~--~~~~~~~~~-~~~gs-~iivTTR~~~v~~--------~~~-~~~~ 292 (897)
... . ..-+||+||+...... ..+...+.. ...+. .||+|++...... .+. +..+
T Consensus 86 -----------~~~-~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i 152 (227)
T PRK08903 86 -----------DFD-P-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVY 152 (227)
T ss_pred -----------hhc-c-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEE
Confidence 011 1 2337899999653221 122211211 12333 4666666433221 222 2338
Q ss_pred eccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhh
Q 043332 293 GVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCM 346 (897)
Q Consensus 293 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L 346 (897)
+++++++++-..++.+.+.... ..-.++....+++.+.|.+..+..+...+
T Consensus 153 ~l~pl~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 153 ELKPLSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999999887777765433221 12225677888889999998887766554
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.90 E-value=3.2e-05 Score=85.13 Aligned_cols=170 Identities=16% Similarity=0.198 Sum_probs=92.8
Q ss_pred ccccchhhHHHHHHHHHHhc----C---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 139 ATLAGEKTKKVVERIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
.++.|. ++.++++.+.+. . ...+-+.++|++|+|||++|+++++... ..| +.+..
T Consensus 122 ~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~-----~~v~~-- 189 (364)
T TIGR01242 122 EDIGGL--EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATF-----IRVVG-- 189 (364)
T ss_pred HHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCE-----Eecch--
Confidence 367887 666677766542 1 1245689999999999999999999762 222 22211
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------------cccccccCCC--C
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------------RLEEVGIPEP--S 267 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------------~~~~~~~~~~--~ 267 (897)
..+.... ++ ........+.+......+.+|++|+++... .+..+...+. .
T Consensus 190 --~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 111222333333334457899999987521 0111111111 1
Q ss_pred CCCCcEEEEEeCCchh-----hcccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 268 EENGCKLVITTRSLGV-----CRFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 268 ~~~gs~iivTTR~~~v-----~~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
...+.+||.||+..+. .+...... +.++..+.++..++|...+.......... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1235678888875322 11111222 88999999999999987664332111112 355777777764
No 111
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.88 E-value=0.00026 Score=72.85 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=114.2
Q ss_pred cccchhh-HHHHHHHHHHhcCC---CeeEEEEEcCCCchHHHHHHHHHHHHhhccCC---CcEEEEEEeCCCCCHHHHHH
Q 043332 140 TLAGEKT-KKVVERIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 140 ~~vGr~~-~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~ 212 (897)
.-||-+. .+.++++-+.+... ..+-+.|||.+|.|||++++++...+....+. --.++.|.+...++...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 3455332 44555665555443 35669999999999999999999887432211 11477788888999999999
Q ss_pred HHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---------cccccccCCCCCCCCcEEEEEeCC---
Q 043332 213 EIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---------RLEEVGIPEPSEENGCKLVITTRS--- 280 (897)
Q Consensus 213 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTTR~--- 280 (897)
.|+.+++..................-+..-+--+||+|++.+.. .+..+. .+...-.=+-|.+-|+.
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHH
Confidence 99999998775544444433333343433334588999997531 111111 11111223345555553
Q ss_pred -----chhhcccccceEeccCCCHH-HHHHHHHHhh---hccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 281 -----LGVCRFMDCKEIGVELLSQE-EALNLFLDKV---RISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 281 -----~~v~~~~~~~~~~l~~L~~~-ea~~Lf~~~~---~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
.+.+.+... +.++....+ |...|+.... ..... ..-..++++..|...++|+.=-+.
T Consensus 194 al~~D~QLa~RF~~--~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 194 ALRTDPQLASRFEP--FELPRWELDEEFRRLLASFERALPLRKP-SNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCHHHHhccCC--ccCCCCCCCcHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHHcCCchHHHH
Confidence 333333222 455555543 3444443221 11111 122347889999999999874443
No 112
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=4.1e-07 Score=100.52 Aligned_cols=124 Identities=26% Similarity=0.286 Sum_probs=63.5
Q ss_pred ccEEEecCCCCCcCCcccccCcccceeeccccccccCCcchhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCC
Q 043332 548 LKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLP 626 (897)
Q Consensus 548 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 626 (897)
|.+.+.++|.+..+-.++.-++.|+.|||+.| +++....+..|++|++|||+.|.+..+|.- .... +|+.|.+++|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH
Confidence 45555555555555555555666666666665 333333555566666666666666555532 2222 25666666665
Q ss_pred CCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEecc
Q 043332 627 LKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFST 676 (897)
Q Consensus 627 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 676 (897)
++++. + +.+|++|+.|+++++.-.....+.-+..|.. |+.|.+.+|.
T Consensus 244 l~tL~-g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~-L~~L~LeGNP 290 (1096)
T KOG1859|consen 244 LTTLR-G-IENLKSLYGLDLSYNLLSEHSELEPLWSLSS-LIVLWLEGNP 290 (1096)
T ss_pred HHhhh-h-HHhhhhhhccchhHhhhhcchhhhHHHHHHH-HHHHhhcCCc
Confidence 55543 2 3556666666665322222223334444444 5555554443
No 113
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00033 Score=78.59 Aligned_cols=177 Identities=12% Similarity=0.154 Sum_probs=99.7
Q ss_pred cccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhcc--------------------CCCcEE
Q 043332 138 TATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET--------------------NKFNVV 196 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~ 196 (897)
-.+++|. +..++.+..++..+.. ..+.++|+.|+||||+|+.+++...... .+++ .
T Consensus 16 ~~diiGq--~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 16 FSEILGQ--DAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred HHHhcCc--HHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3479998 6778888888877664 6788999999999999999988762210 0111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEE
Q 043332 197 IWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKL 274 (897)
Q Consensus 197 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~i 274 (897)
+++.........++. ++.+. +...-..+.+-++|+|++... ...+.+...+.....++.+
T Consensus 93 ~~i~g~~~~gid~ir-~i~~~-----------------l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 93 LEIDGASHRGIEDIR-QINET-----------------VLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EEeeccccCCHHHHH-HHHHH-----------------HHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 111111111111111 11111 110001245668899998653 2223333333322335566
Q ss_pred EEEeC-Cchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHH
Q 043332 275 VITTR-SLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLA 338 (897)
Q Consensus 275 ivTTR-~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 338 (897)
|++|. ...+.... .+..+++.++++++....+.+.+..... .-..+.+..|++.++|.+.-
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 66553 33332221 2333899999999998888776543211 12255678899999997643
No 114
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=4.8e-05 Score=81.86 Aligned_cols=77 Identities=27% Similarity=0.441 Sum_probs=52.6
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCC-CCCcCCcccccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHT-DIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~l~~L~~L~ 575 (897)
.++++|++++|.+..+|. -..+|++|.+++|..+..+|..+ .++|++|++++| .+..+|.+ |+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence 457788888888888772 22468889998887777777643 357888999888 57777764 44444
Q ss_pred ccc--cccccCCc
Q 043332 576 LRY--CLRLRRVP 586 (897)
Q Consensus 576 L~~--~~~~~~lp 586 (897)
+++ |..+..+|
T Consensus 119 L~~n~~~~L~~LP 131 (426)
T PRK15386 119 IKGSATDSIKNVP 131 (426)
T ss_pred eCCCCCcccccCc
Confidence 443 23355566
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00036 Score=81.10 Aligned_cols=177 Identities=11% Similarity=0.151 Sum_probs=103.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhc--------------------cCCCcEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKE--------------------TNKFNVVI 197 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~~f~~~~ 197 (897)
.+++|. +..++.|..++..+.+ ..+.++|+.|+||||+|+.++...... ..+|+. .
T Consensus 17 ~~viGq--~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 17 ESVVGQ--EALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 478997 6778888888887765 568899999999999999998875211 112332 2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEE
Q 043332 198 WVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLV 275 (897)
Q Consensus 198 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii 275 (897)
.+..+....+.++.. ++.++.... . .+++-++|+|++... ...+.+...+..-..++.+|
T Consensus 94 ~ld~~~~~~vd~Ir~-li~~~~~~P----------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 94 ELDAASNNSVDDIRN-LIEQVRIPP----------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EecccccCCHHHHHH-HHHHHhhCc----------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 222222222222221 111111000 0 134558899998754 23444443333223455555
Q ss_pred E-EeCCchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 276 I-TTRSLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 276 v-TTR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
+ ||+...+.... .+..+++.+++.++....+.+.+..... ....+.+..|++.++|...-+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 5 44444444322 2333899999999999888876644321 112456788999999977544
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.0003 Score=81.14 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=106.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCc-EEEEEEeCCCCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
.+++|. +..++.|.+++..+.+ ..+.++|+.|+||||+|+.+++........-. ...+ +.++...-...|..
T Consensus 24 ~dliGq--~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQ--EAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhc
Confidence 379998 7788888888877764 47889999999999999999987632110000 0000 00111111122211
Q ss_pred HHcCCCC----CChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEe-CCchhhc
Q 043332 217 ALNQSLP----ENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITT-RSLGVCR 285 (897)
Q Consensus 217 ~l~~~~~----~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTT-R~~~v~~ 285 (897)
.-....- ......+.++.+..... .+++-++|+|++.... ..+.+...+..-..++.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1110000 00011222333332221 2345588999986532 2333333333223456666555 4333322
Q ss_pred cc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 286 FM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 286 ~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
.. .+..+.+..++.++....+.+.+..... ....+....|++.++|.+.-+...
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 2334899999999999999887654321 112456778999999998655443
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00044 Score=80.31 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=99.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +..++.|..++..++ ...+.++|+.|+||||+|+.++...-....... + ..+. .....
T Consensus 18 ~dIiGQ--e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~----~pC~---~C~~~--- 82 (725)
T PRK07133 18 DDIVGQ--DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---L----EPCQ---ECIEN--- 82 (725)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---C----Cchh---HHHHh---
Confidence 478997 677888888887766 456789999999999999999887521110000 0 0000 00000
Q ss_pred HcCCCC------CChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEE-EEeCCchhh
Q 043332 218 LNQSLP------ENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLV-ITTRSLGVC 284 (897)
Q Consensus 218 l~~~~~------~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ii-vTTR~~~v~ 284 (897)
.+.... ........++.+..... .+++-++|+|++... ..+..+...+......+.+| +|++...+.
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 00001122223332221 245668899998653 23333433322222344444 555544443
Q ss_pred cc--cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 285 RF--MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 285 ~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.. -.+..+.+.+++.++....+...+..... ....+.+..|++.++|.+.-+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 22 12344999999999999888776543211 112455778999999977533
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00026 Score=80.81 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=105.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +..++.|...+..+. ...+.++|+.|+||||+|+.+++...... ..+ ...++.-...+.|...
T Consensus 16 ~dIiGQ--e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~-------~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 16 AEVAGQ--ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCET-APT-------GEPCNTCEQCRKVTQG 85 (624)
T ss_pred HHhcCC--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccC-CCC-------CCCCcccHHHHHHhcC
Confidence 378997 666777777777765 57888999999999999999998763110 000 0011111111111111
Q ss_pred HcCCC---C-CChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCC-chhhcc
Q 043332 218 LNQSL---P-ENEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRS-LGVCRF 286 (897)
Q Consensus 218 l~~~~---~-~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~ 286 (897)
..... . ......+.++.+.+.+ ..+++-++|+|+++.. .....+...+........+|++|.. ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 00000 0 0000011112222111 1345668999999754 2233343333222234555555544 444322
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh-HHHHHHHhhh
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP-LAIVTVASCM 346 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-lal~~~~~~L 346 (897)
. .+..+++.+++.++....+...+..... .-..+.+..|++.++|.+ .|+..+..++
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 2334899999999999888876543321 122456788999999965 5666665444
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00043 Score=82.66 Aligned_cols=173 Identities=13% Similarity=0.100 Sum_probs=101.8
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC---------------------CCcEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN---------------------KFNVV 196 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------~f~~~ 196 (897)
.++||. +..++.|..++..+.+ ..+.++|..|+||||+|+.+++....... +++ +
T Consensus 15 ~eiiGq--e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 15 AEVIGQ--EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 478997 6778888888887665 56889999999999999999988732111 111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCCC
Q 043332 197 IWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEEN 270 (897)
Q Consensus 197 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~ 270 (897)
+++.......+. .++.+.... ..+++-++|||+++.. ...+.+...+..-..
T Consensus 92 ~eidaas~~~Vd----------------------~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 92 TEIDAASHGGVD----------------------DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred EEecccccCCHH----------------------HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 122111111111 112222111 1345558899999764 223333333332234
Q ss_pred CcEEEEEe-CCchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 271 GCKLVITT-RSLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 271 gs~iivTT-R~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.+.+|++| ....+...+ .+..|++..++.++..+.+.+.+..... ....+....|++.++|.+..+
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 55555555 444443322 2344899999999998888776543321 112445677899999988444
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00057 Score=77.22 Aligned_cols=180 Identities=12% Similarity=0.121 Sum_probs=103.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC-------------------CCcEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN-------------------KFNVVIW 198 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~w 198 (897)
.+++|. +...+.|...+..+.+ .++.++|+.|+||||+|+.+++..-.... +++ +++
T Consensus 14 deiiGq--e~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~e 90 (535)
T PRK08451 14 DELIGQ--ESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIE 90 (535)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEE
Confidence 479997 6677888888877765 46789999999999999999887521110 111 122
Q ss_pred EEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE
Q 043332 199 VTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI 276 (897)
Q Consensus 199 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv 276 (897)
+..+....+.++...+ ..... .-..+++-++|+|++... ...+.+...+......+++|+
T Consensus 91 ldaas~~gId~IReli-e~~~~-----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 91 MDAASNRGIDDIRELI-EQTKY-----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred eccccccCHHHHHHHH-HHHhh-----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 2221111222222111 11100 000134568899999753 223333333322234566666
Q ss_pred EeCCc-hhhcc--cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 277 TTRSL-GVCRF--MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 277 TTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+|.+. .+... -.+..+++.+++.++....+...+..... .-..+.+..|++.++|.+.-+...
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 66542 22211 12334999999999999888776644321 122466788999999998555443
No 121
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.1e-06 Score=87.30 Aligned_cols=79 Identities=24% Similarity=0.143 Sum_probs=32.8
Q ss_pred ccEEEecCCCCC--cCCcccccCcccceeeccccccccCCc-chhccccCCEeeccCC-cCccc--CccccCCCCCCEEe
Q 043332 548 LKVLNLSHTDIE--VLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEAT-RIEEV--PEGMEMLENLSYLY 621 (897)
Q Consensus 548 Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~-~l~~l--p~~~~~l~~L~~L~ 621 (897)
|++|||++..|+ .+-.-+..|.+|+.|.|.++..-..+- .+.+-.+|+.|+++.| .++.. .--+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444444444443 222223344444444444432111111 2444445555555554 33321 11244455555555
Q ss_pred CCCCC
Q 043332 622 LYSLP 626 (897)
Q Consensus 622 l~~~~ 626 (897)
+++|.
T Consensus 267 lsWc~ 271 (419)
T KOG2120|consen 267 LSWCF 271 (419)
T ss_pred chHhh
Confidence 55554
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00053 Score=78.68 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.++||. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++....... .+ + ..++.-.....|...
T Consensus 13 ~eivGq--~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~---~----~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 13 AEVVGQ--EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQG-PT---A----TPCGVCESCVALAPN 82 (584)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccC-CC---C----CcccccHHHHHhhcc
Confidence 478998 7778888888887764 46789999999999999999987631110 00 0 001111111111100
Q ss_pred HcCC-----CCC-ChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE-EeCCchhh
Q 043332 218 LNQS-----LPE-NEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI-TTRSLGVC 284 (897)
Q Consensus 218 l~~~-----~~~-~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v~ 284 (897)
-+.. ... .....+.+..+.... ..+++-++|+|++... ...+.+...+......+.+|+ ||....+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0000 000 000111122222211 1234558899998753 233333333332234555554 54444443
Q ss_pred ccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHHHHHh
Q 043332 285 RFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIVTVAS 344 (897)
Q Consensus 285 ~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~~~~~ 344 (897)
... .+..+++.+++.++..+.+...+..... ....+....|++.++|.+. |+..+-.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 221 2344999999999998888776544321 1124566778999999875 4444433
No 123
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.1e-05 Score=56.21 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=24.3
Q ss_pred CCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc
Q 043332 546 HGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP 586 (897)
Q Consensus 546 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp 586 (897)
++|++|++++|.|+.+|..+++|++|++|++++| .+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3567777777777777666677777777777766 344443
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00023 Score=83.05 Aligned_cols=192 Identities=15% Similarity=0.171 Sum_probs=105.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.++||. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++........- ....++.....+.|...
T Consensus 16 ~eiiGq--~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~-------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQ--EHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP-------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCC--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccCHHHHHHhcC
Confidence 479998 6777888888876654 5678999999999999999998762110000 00111112222233221
Q ss_pred HcCCC---CC-ChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCC-chhhcc
Q 043332 218 LNQSL---PE-NEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRS-LGVCRF 286 (897)
Q Consensus 218 l~~~~---~~-~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~ 286 (897)
.+... .. .....+.+..+...+. .+++-++|+|++... ...+.+...+......+.+|++|.+ ..+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 11100 00 0001112222222221 234668999998653 2334443333322345566665543 333221
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
. .+..+.+..++.++....+...+..... .-..+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1233889999999998888877654321 112466788999999988655443
No 125
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.73 E-value=0.00026 Score=71.58 Aligned_cols=179 Identities=16% Similarity=0.208 Sum_probs=110.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEE-EEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW-VTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +..+..|...+.....+....+|++|.|||+-|.+++...-. .+.|.+++- .++|...+..-+...+-
T Consensus 36 de~~gQ--e~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr~Kik-- 110 (346)
T KOG0989|consen 36 DELAGQ--EHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVREKIK-- 110 (346)
T ss_pred Hhhcch--HHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcccccccccchhhhhc--
Confidence 368887 777888888888877899999999999999999999888632 344544432 34554433321111110
Q ss_pred HcCCCCCChhHHHHHHHHHHHHh-----ccCe-EEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCchh-hcc--
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLK-----AKAK-FVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLGV-CRF-- 286 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~-----~~~r-~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v-~~~-- 286 (897)
....+..... ..++ -.+|||+++.. +.|..+.....+....++.++.+..... -.-
T Consensus 111 -------------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 111 -------------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -------------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0001100000 1122 47889999864 5677776665555666766655554222 111
Q ss_pred cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHH
Q 043332 287 MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLA 338 (897)
Q Consensus 287 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 338 (897)
..+..|..++|.+++...-++..+..++- +-..+..+.|++.++|.-.-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDGDLRR 226 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCcHHH
Confidence 12344899999999999888877754432 22245677899999886543
No 126
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.5e-05 Score=93.22 Aligned_cols=130 Identities=20% Similarity=0.254 Sum_probs=90.5
Q ss_pred ccccEEEcccccc--ccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCccccee
Q 043332 497 ENLERVSLMKNNI--KEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSL 574 (897)
Q Consensus 497 ~~l~~l~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 574 (897)
.++++|++++... ...+......+|.|++|.+++-.....--...+.++++|+.||+|+++++.+ ..++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4678888877531 1222233456899999999875221111123457899999999999999988 679999999999
Q ss_pred eccccccccCCc---chhccccCCEeeccCCcCcccC-------ccccCCCCCCEEeCCCCCCC
Q 043332 575 LLRYCLRLRRVP---SVAKLLALHYLDLEATRIEEVP-------EGMEMLENLSYLYLYSLPLK 628 (897)
Q Consensus 575 ~L~~~~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp-------~~~~~l~~L~~L~l~~~~~~ 628 (897)
.+.+- .+..-+ .+.+|++|++||+|......-+ +.-..|++|+.||.+++.+.
T Consensus 201 ~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 98874 333322 5888999999999987433322 11234889999999987643
No 127
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.72 E-value=0.00026 Score=74.49 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=69.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKA 243 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 243 (897)
-+.++|++|+||||+|+.++..... .+......|+.++. .++. ..+... .. .....+.+.. .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l~----~~~~g~---~~---~~~~~~~~~a---~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDLV----GQYIGH---TA---PKTKEILKRA---M 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHHh----Hhhccc---ch---HHHHHHHHHc---c
Confidence 4789999999999999998887632 12211113444442 1222 111111 11 1122233322 2
Q ss_pred eEEEEEcCCCcc-----------ccccccccCCCCCCCCcEEEEEeCCchhhccc--c-------cceEeccCCCHHHHH
Q 043332 244 KFVLILDDMWKE-----------FRLEEVGIPEPSEENGCKLVITTRSLGVCRFM--D-------CKEIGVELLSQEEAL 303 (897)
Q Consensus 244 r~LlVlDdv~~~-----------~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~--~-------~~~~~l~~L~~~ea~ 303 (897)
.-+|+||++... ...+.+...+.....+.+||+++......... . ...+.+++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358899998621 11222222333333455677766543222111 1 123899999999999
Q ss_pred HHHHHhhhc
Q 043332 304 NLFLDKVRI 312 (897)
Q Consensus 304 ~Lf~~~~~~ 312 (897)
.++...+..
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998876543
No 128
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.72 E-value=0.00056 Score=76.55 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=100.9
Q ss_pred ccchhhHHHHHHHHHHhcCC--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 141 LAGEKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
++|..-......+.++.... ....+.|+|..|+|||+|++++++.... ...-..+++++. .++...+...+
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~ 185 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNAL 185 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHH
Confidence 45653232333444443332 2356899999999999999999998732 211234566643 33444455444
Q ss_pred cCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---cc-cccccCCCC-CCCCcEEEEEeCCch---------hh
Q 043332 219 NQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---RL-EEVGIPEPS-EENGCKLVITTRSLG---------VC 284 (897)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTTR~~~---------v~ 284 (897)
... . .....+.+. + .-+|||||++... .+ +.+...+.. ...|..||+||.... +.
T Consensus 186 ~~~-----~----~~~~~~~~~-~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 186 RNN-----K----MEEFKEKYR-S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred HcC-----C----HHHHHHHHH-h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 321 1 112223332 1 3388999997421 11 112111110 123556888876421 22
Q ss_pred cccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 285 RFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 285 ~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
.++.... +.+++.+.++-..++.+.+..... .-.+++...|++.+.|..-.+.-
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEGL---ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHH
Confidence 2333323 889999999999999988765322 12256778888888887765443
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.7e-05 Score=55.62 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=28.8
Q ss_pred ccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCC
Q 043332 592 LALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFP 631 (897)
Q Consensus 592 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~ 631 (897)
++|++|++++|+|+.+|..+++|++|+.|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777777788888888888888777654
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00067 Score=76.08 Aligned_cols=181 Identities=17% Similarity=0.189 Sum_probs=101.8
Q ss_pred ccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 141 LAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
++|..-........++..+.+ ..-+.|+|..|+|||+|++++++.... ...-..++|++. .++..++...+.
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~ 180 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMK 180 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHh
Confidence 446432333444444443322 345999999999999999999998732 111234667754 345555555553
Q ss_pred CCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---cc-cccccCCCC-CCCCcEEEEEeCC-chh--------hc
Q 043332 220 QSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---RL-EEVGIPEPS-EENGCKLVITTRS-LGV--------CR 285 (897)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTTR~-~~v--------~~ 285 (897)
.. . .....+.+. ...-+|++||+.... .. +++...+.. ...|..||+||.. ..- ..
T Consensus 181 ~~-----~----~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S 250 (440)
T PRK14088 181 EG-----K----LNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_pred cc-----c----HHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 21 0 112222221 234489999997421 11 122111110 1234578888853 211 12
Q ss_pred ccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 286 FMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 286 ~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
++.... +.+++.+.+.-.+++.+++..... .--+++...|++.+.|.-..+.-
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhccccCHHHHHH
Confidence 222222 789999999999999888754322 11256788888888887655433
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00094 Score=75.49 Aligned_cols=177 Identities=12% Similarity=0.098 Sum_probs=100.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccC------------------CCcEEEEE
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (897)
.+++|. +..+..+..++..+.+ .++.++|+.|+||||+|+.++........ .+.-++++
T Consensus 16 ~diiGq--~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQ--EIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 378897 6777888888877654 56778999999999999999887521100 01111222
Q ss_pred EeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcE
Q 043332 200 TVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCK 273 (897)
Q Consensus 200 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ 273 (897)
..+...... .++.+..... .+++-++|+|+++.. ...+.+...+........
T Consensus 94 daas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 221111111 1122222111 245669999998753 223333322322223445
Q ss_pred EEEEe-CCchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 274 LVITT-RSLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 274 iivTT-R~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+|++| +...+.... .+..+.+.+++.++....+...+..... ....+.+..|++.++|.+..+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55444 433332211 2334899999999998888876543321 112456677888999977655443
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68 E-value=0.00018 Score=78.39 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=53.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
.+++. +..++.++..|.. .+.|.++|++|+|||++|+++++... ....|+.+.||+++..++..++..
T Consensus 176 d~~i~--e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~-~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 176 DLFIP--ETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLT-GEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred cccCC--HHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhc-CCcccceeeEEeecccccHHHHhc
Confidence 45665 6677888887764 35678899999999999999999873 335788899999999888776654
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00061 Score=78.76 Aligned_cols=193 Identities=13% Similarity=0.188 Sum_probs=102.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE-eCCCCCHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLDLIKLQNEIAA 216 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~ 216 (897)
.++||. +..+..|..++..+.+ ..+.++|+.|+||||+|+.+++..... ..++.-.|-. +...++.-...+.+..
T Consensus 16 ~eivGQ--e~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQ--EHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhc
Confidence 478997 6777888888877664 568899999999999999999886321 1111011110 0111111112222211
Q ss_pred HHcCCC---CC-ChhHHHHHHHHHHHH----hccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEe-CCchhhc
Q 043332 217 ALNQSL---PE-NEDEVRRAGRLSGML----KAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITT-RSLGVCR 285 (897)
Q Consensus 217 ~l~~~~---~~-~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTT-R~~~v~~ 285 (897)
.-..+. .. .....+.+..+...+ ..+.+-++|+|+++... ..+.+...+..-...+.+|++| +...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 100000 00 001112222333222 12345588999987542 2333433333223345555444 4444432
Q ss_pred cc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH
Q 043332 286 FM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL 337 (897)
Q Consensus 286 ~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 337 (897)
.. .+..+++.+++.++....+.+.+..... .-..+.+..+++.++|..-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHH
Confidence 22 2333899999999988888776543211 1125667889999999664
No 134
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.67 E-value=0.0004 Score=72.52 Aligned_cols=132 Identities=16% Similarity=0.147 Sum_probs=67.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
..-+.++|++|+||||+|+.+++..... ..-....++.++.. ++.... ++ .....+..+....
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~----~l~~~~---~g-------~~~~~~~~~~~~a-- 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA----DLVGEY---IG-------HTAQKTREVIKKA-- 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH----Hhhhhh---cc-------chHHHHHHHHHhc--
Confidence 4567899999999999999999875221 11111123333221 111110 01 0111222222221
Q ss_pred cCeEEEEEcCCCcc----------ccccccccCCCCCCCCcEEEEEeCCchh----------hcccccceEeccCCCHHH
Q 043332 242 KAKFVLILDDMWKE----------FRLEEVGIPEPSEENGCKLVITTRSLGV----------CRFMDCKEIGVELLSQEE 301 (897)
Q Consensus 242 ~~r~LlVlDdv~~~----------~~~~~~~~~~~~~~~gs~iivTTR~~~v----------~~~~~~~~~~l~~L~~~e 301 (897)
..-+|++|++..- ...+.+............+|+++...+. ...+ ...+.+++++.++
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~e 182 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEE 182 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHH
Confidence 2348899999642 1222233223222223345555543322 2222 1227889999999
Q ss_pred HHHHHHHhhhc
Q 043332 302 ALNLFLDKVRI 312 (897)
Q Consensus 302 a~~Lf~~~~~~ 312 (897)
-.+++.+.+..
T Consensus 183 l~~Il~~~~~~ 193 (261)
T TIGR02881 183 LMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=97.66 E-value=0.0004 Score=73.06 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=69.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKA 243 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 243 (897)
.+.++|++|+||||+|+.+++.... .+.-....|+.++.. ++.... .+.. . .....+.+.. .
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~----~l~~~~---~g~~------~-~~~~~~l~~a---~ 122 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD----DLVGQY---IGHT------A-PKTKEVLKKA---M 122 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH----HHHHHH---hccc------h-HHHHHHHHHc---c
Confidence 4788999999999999999887522 111111124444421 222211 1111 0 1112222222 2
Q ss_pred eEEEEEcCCCcc-----------ccccccccCCCCCCCCcEEEEEeCCchhh----------cccccceEeccCCCHHHH
Q 043332 244 KFVLILDDMWKE-----------FRLEEVGIPEPSEENGCKLVITTRSLGVC----------RFMDCKEIGVELLSQEEA 302 (897)
Q Consensus 244 r~LlVlDdv~~~-----------~~~~~~~~~~~~~~~gs~iivTTR~~~v~----------~~~~~~~~~l~~L~~~ea 302 (897)
.-+|++|++... ...+.+.....+...+.+||+++....+. +++ ...+.+++++.+|.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~el 201 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEEL 201 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHHH
Confidence 348999998642 11122222233333456777777543332 211 12288999999999
Q ss_pred HHHHHHhhhc
Q 043332 303 LNLFLDKVRI 312 (897)
Q Consensus 303 ~~Lf~~~~~~ 312 (897)
.+++...+..
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 136
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=3.6e-06 Score=93.38 Aligned_cols=109 Identities=22% Similarity=0.232 Sum_probs=83.8
Q ss_pred cccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 569 TNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 569 ~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
..|.+.+.++| .+..+. ++.-++.|+.|||++|++.+.. .+..+.+|+|||++.|.+..+|.---..+ .|+.|.+.
T Consensus 164 n~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 34666677765 566666 6888899999999999998875 88899999999999999998876322233 39999998
Q ss_pred cCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhh
Q 043332 648 FGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYV 684 (897)
Q Consensus 648 ~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~ 684 (897)
++....+..+.+|.+ |+.|+++.|-+.+.....
T Consensus 241 ---nN~l~tL~gie~Lks-L~~LDlsyNll~~hseL~ 273 (1096)
T KOG1859|consen 241 ---NNALTTLRGIENLKS-LYGLDLSYNLLSEHSELE 273 (1096)
T ss_pred ---ccHHHhhhhHHhhhh-hhccchhHhhhhcchhhh
Confidence 233455678889999 999999998776655443
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0011 Score=76.22 Aligned_cols=190 Identities=15% Similarity=0.154 Sum_probs=102.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++...... .... ..++.-...+.|...
T Consensus 16 ~diiGq--e~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~~-------~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 16 NSLEGQ--DFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTP-------MPCGECSSCKSIDND 85 (563)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcccc-CCCC-------CCCccchHHHHHHcC
Confidence 479998 6778888888877664 5788999999999999999999763110 0000 000000000111100
Q ss_pred HcCC---CC-CChhHHHHHHHHHHHH----hccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCC-chhhcc
Q 043332 218 LNQS---LP-ENEDEVRRAGRLSGML----KAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRS-LGVCRF 286 (897)
Q Consensus 218 l~~~---~~-~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~ 286 (897)
-... .. ......+.+..+...+ ..+++-++|+|++... ..++.+...+......+.+|++|.. ..+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 00 0001111122222111 1245568899998753 2344444333332345566655543 333221
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
. .+..+++.+++.++..+.+.+.+..... .-.++.+..|++.++|.+..+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 2333889999999998888776643221 12256677899999998855444
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.0005 Score=82.64 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=89.1
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccC--C-CcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN--K-FNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~-f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
.++|| +++++++++.|......-+.++|++|+|||++|+.++........ . .+..+|.. +...+...
T Consensus 183 ~~igr--~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~--- 252 (731)
T TIGR02639 183 PLIGR--EDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAG--- 252 (731)
T ss_pred cccCc--HHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhh---
Confidence 68999 888899999887766666789999999999999999998632111 1 13344421 11111110
Q ss_pred HHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------cccccccCCCCCCCCc-EEEEEeCCchh--
Q 043332 217 ALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------RLEEVGIPEPSEENGC-KLVITTRSLGV-- 283 (897)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------~~~~~~~~~~~~~~gs-~iivTTR~~~v-- 283 (897)
. ....+....+..+.+.+...++.+|++|++..-. +...+..+.. ..|. ++|-+|...+.
T Consensus 253 ---~--~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 253 ---T--KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred ---c--cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHHH
Confidence 0 0012233445555555544567899999986321 1112222221 2333 45544443221
Q ss_pred --------hcccccceEeccCCCHHHHHHHHHHhh
Q 043332 284 --------CRFMDCKEIGVELLSQEEALNLFLDKV 310 (897)
Q Consensus 284 --------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 310 (897)
.+++ ..+.+++++.++..+++....
T Consensus 326 ~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRF--QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHH
Confidence 1212 238999999999999998654
No 139
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.61 E-value=0.0023 Score=66.87 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=100.6
Q ss_pred cccccchhhHHHHHHHHHHhcCCC---eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMGDK---VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEI 214 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 214 (897)
.+.+.+| +..+..+...+-+.. +..|.|+|-.|.|||.+++++.+... -..+|+++-+.++...++..|
T Consensus 5 ~~~v~~R--e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCR--ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccch--HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHH
Confidence 3467788 777888877775543 45668999999999999999999862 125899999999999999999
Q ss_pred HHHHcCCCCCCh-hHH--HHHHHHHHHHh-------ccCeEEEEEcCCCccccccccccC----CC-CCCCCcEEEEEeC
Q 043332 215 AAALNQSLPENE-DEV--RRAGRLSGMLK-------AKAKFVLILDDMWKEFRLEEVGIP----EP-SEENGCKLVITTR 279 (897)
Q Consensus 215 ~~~l~~~~~~~~-~~~--~~~~~l~~~l~-------~~~r~LlVlDdv~~~~~~~~~~~~----~~-~~~~gs~iivTTR 279 (897)
+.+.+....+.. .+. +........+. .++.++||||+++.-.+.+....+ +. -.....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 999862211111 111 12222222221 246899999999875544432211 00 0011223334333
Q ss_pred C--chh-hcccccce---EeccCCCHHHHHHHHHHh
Q 043332 280 S--LGV-CRFMDCKE---IGVELLSQEEALNLFLDK 309 (897)
Q Consensus 280 ~--~~v-~~~~~~~~---~~l~~L~~~ea~~Lf~~~ 309 (897)
. +.. ...+++.. +..+.-+.+|-..++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 111 22234433 677888999999988654
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.58 E-value=0.00062 Score=73.67 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=79.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +...+.+..++..+. ..++.++|++|+||||+|+.+++... .. ...+..+. .....+...+. .
T Consensus 21 ~~~~~~--~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~---~~---~~~i~~~~-~~~~~i~~~l~-~ 90 (316)
T PHA02544 21 DECILP--AADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG---AE---VLFVNGSD-CRIDFVRNRLT-R 90 (316)
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---cc---ceEeccCc-ccHHHHHHHHH-H
Confidence 478998 677888888887665 46777799999999999999998751 11 23344443 22222111111 1
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--cc-ccccccCCCCCCCCcEEEEEeCCchh-hccc--ccce
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FR-LEEVGIPEPSEENGCKLVITTRSLGV-CRFM--DCKE 291 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~-~~~~~~~~~~~~~gs~iivTTR~~~v-~~~~--~~~~ 291 (897)
.... . .. .+.+-++|+||+... .. ...+...+.....++++|+||..... .... .+..
T Consensus 91 ~~~~--------------~-~~-~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 FAST--------------V-SL-TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHh--------------h-cc-cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1000 0 01 123458899999754 11 12222222223456788888865321 1111 1122
Q ss_pred EeccCCCHHHHHHHHHH
Q 043332 292 IGVELLSQEEALNLFLD 308 (897)
Q Consensus 292 ~~l~~L~~~ea~~Lf~~ 308 (897)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 66767777777666543
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.58 E-value=0.00053 Score=68.83 Aligned_cols=157 Identities=14% Similarity=0.067 Sum_probs=88.3
Q ss_pred cccchhhHHHHHHHHHHhcCCC--e--eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDK--V--TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~--~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
-+||..-+.....+.++-.... . +.+.|+|+.|+|||+|++.+++... . .++. ..+.
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~-----~~~~--~~~~--------- 78 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN---A-----YIIK--DIFF--------- 78 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC---C-----EEcc--hhhh---------
Confidence 4666533444555555443211 2 6689999999999999999877641 1 1111 0000
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCC-CCCCCcEEEEEeCCchh-------hccc
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEP-SEENGCKLVITTRSLGV-------CRFM 287 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~-~~~~gs~iivTTR~~~v-------~~~~ 287 (897)
.. ..+ + ..-++++||+....+ ..+...+. -...|..||+|++.... ..++
T Consensus 79 ----------~~---------~~~-~-~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 79 ----------NE---------EIL-E-KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred ----------ch---------hHH-h-cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 00 001 1 234788999974321 11111100 01356689999885332 2233
Q ss_pred ccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 288 DCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 288 ~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
.+.. ++++++++++-..++.+.+.... -.--+++..-|++.+.|.--.+.
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~k~~~~~~---l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIFKHFSISS---VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccCCHHHHH
Confidence 3333 89999999998888887765321 11225677778888877655443
No 142
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.58 E-value=1.3e-05 Score=81.95 Aligned_cols=40 Identities=25% Similarity=0.195 Sum_probs=23.3
Q ss_pred ccccCCEeeccCCcCc-ccC----ccccCCCCCCEEeCCCCCCCc
Q 043332 590 KLLALHYLDLEATRIE-EVP----EGMEMLENLSYLYLYSLPLKK 629 (897)
Q Consensus 590 ~l~~L~~L~l~~~~l~-~lp----~~~~~l~~L~~L~l~~~~~~~ 629 (897)
..++|++|+||.|-+. ..+ .-+.+...|++|+|.+|.+..
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 3346667777666443 122 235566777777777776543
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0018 Score=75.39 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=104.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++|. +..+..|..++..+. ...+.++|+.|+||||+|+.++...... ..+.. ....++.....+.|...
T Consensus 16 ~~liGq--~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQ--EAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL--NSDKP----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC--CcCCC----CCCCCcccHHHHHHhcC
Confidence 478897 677788888887765 3678899999999999999999986321 11000 00111112222222221
Q ss_pred HcCCC----CCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCC-chhhcc
Q 043332 218 LNQSL----PENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRS-LGVCRF 286 (897)
Q Consensus 218 l~~~~----~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~ 286 (897)
..... .......+.++.+..... .+++-++|+|+++.. .....+...+......+.+|++|.+ ..+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11100 001111223333332221 234568899999753 2334443333322234445544443 333221
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
. .+..+.+..++.++....+...+..... ....+.+..|++.++|.+..+...
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2333888899999888877766544221 111355788999999988655443
No 144
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.57 E-value=0.001 Score=75.52 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=102.1
Q ss_pred ccchhhHHHHHHHHHHhcCC--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 141 LAGEKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
++|..-.........+.... ...-+.|+|..|+|||+|++++++.... ...-..+++++.. ++..++...+
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~ 197 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNAL 197 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHH
Confidence 45643333444444444332 2456899999999999999999998732 2112345566443 3334444444
Q ss_pred cCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---cc-cccccCCCC-CCCCcEEEEEeCCch---------hh
Q 043332 219 NQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---RL-EEVGIPEPS-EENGCKLVITTRSLG---------VC 284 (897)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~-~~~~~~~~~-~~~gs~iivTTR~~~---------v~ 284 (897)
... ....+.+.+. +.-+||+||++... .+ +.+...+.. ...|..||+||.... +.
T Consensus 198 ~~~---------~~~~~~~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 198 RNN---------TMEEFKEKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HcC---------cHHHHHHHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 321 0122233332 24489999996421 11 122111110 123456888886532 12
Q ss_pred cccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 285 RFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 285 ~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
.++.... +++++.+.++-..++.+++..... .-.+++...|++.+.|....+..
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHHHH
Confidence 3333333 889999999999999988754321 12256788899999988765443
No 145
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.012 Score=59.12 Aligned_cols=166 Identities=19% Similarity=0.269 Sum_probs=89.0
Q ss_pred ccccchhhHHHHHHHHHHh-----cCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDL-----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
.++||. ++.++++-=++ .++.+-=|.++|++|.||||||.-+++... + .+ .+.+.+-+++ ..+
T Consensus 26 ~efiGQ--~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-v--n~------k~tsGp~leK-~gD 93 (332)
T COG2255 26 DEFIGQ--EKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG-V--NL------KITSGPALEK-PGD 93 (332)
T ss_pred HHhcCh--HHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-C--Ce------EecccccccC-hhh
Confidence 379997 44555443333 234467789999999999999999999973 2 11 1111111000 000
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---------cccccccCC-CCCCCCcEEE--------
Q 043332 214 IAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---------RLEEVGIPE-PSEENGCKLV-------- 275 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---------~~~~~~~~~-~~~~~gs~ii-------- 275 (897)
+ ..+...+. ..=++.+|.+.... ..+++.... ...++++|.|
T Consensus 94 l------------------aaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 94 L------------------AAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred H------------------HHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 1 11111121 12244555553210 011111110 0123333333
Q ss_pred ---EEeCCchhhcccccce---EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 276 ---ITTRSLGVCRFMDCKE---IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 276 ---vTTR~~~v~~~~~~~~---~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.|||.-.+..-..... .+++..+.+|-.++..+.+..-.. .-.++.+.+|+++..|-|.-.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHH
Confidence 5888755543332222 678888999999998877643211 122567889999999999643
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.56 E-value=0.00091 Score=81.04 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=97.9
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhcc---CCCcEEEE-EEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIW-VTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~vs~~~~~~~~~~~i~ 215 (897)
.++|| +.++.++++.|......-+.++|.+|+||||+|+.++....... .-.+..+| +..+.-
T Consensus 188 ~~iGr--~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------- 254 (852)
T TIGR03345 188 PVLGR--DDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------- 254 (852)
T ss_pred cccCC--HHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----------
Confidence 68999 77899999998877766777999999999999999999863210 01123333 222210
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHh-ccCeEEEEEcCCCccc---------cccccccCCCCCCCC-cEEEEEeCCchhh
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLK-AKAKFVLILDDMWKEF---------RLEEVGIPEPSEENG-CKLVITTRSLGVC 284 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~---------~~~~~~~~~~~~~~g-s~iivTTR~~~v~ 284 (897)
........+....+..+..... .+.+.+|++|++..-. +...+..|.. ..| -++|-||...+..
T Consensus 255 ---~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 255 ---QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEYK 329 (852)
T ss_pred ---hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHHh
Confidence 0000011222334444444443 2468999999986431 1111222222 334 3556555543221
Q ss_pred cc--------cccceEeccCCCHHHHHHHHHHhhhcccc-ccchhhHHHHHHHHHHhCCC
Q 043332 285 RF--------MDCKEIGVELLSQEEALNLFLDKVRISTS-QILNLDKEIINSVVEECAGL 335 (897)
Q Consensus 285 ~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~G~ 335 (897)
.. -....+.+++++.++..+++......-.. ....-..+....+++.+.+.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11 11223899999999999997543321110 01111234455566666543
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00099 Score=77.32 Aligned_cols=191 Identities=14% Similarity=0.186 Sum_probs=100.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.++||. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++....... .+ ...++.......|...
T Consensus 16 ~~iiGq--~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 16 SDLTGQ--EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG-LT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CC-------CCCCCccHHHHHHhcC
Confidence 479998 6777888888877764 56789999999999999999887521110 00 0000111111111000
Q ss_pred HcCCC---C-CChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEE-EeCCchhhcc
Q 043332 218 LNQSL---P-ENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVI-TTRSLGVCRF 286 (897)
Q Consensus 218 l~~~~---~-~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iiv-TTR~~~v~~~ 286 (897)
-..+. . ......+.++.+..... .+++-++|+|++.... ....+...+......+.+|+ ||....+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 00000 0 00001111222222221 2345588999986532 23333322222233555554 5444444332
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHHHH
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIVTV 342 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~~~ 342 (897)
. .+..+++.+++.++....+...+..... .-..+.+..|++.++|... |+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2333889999999988888766543321 1124567778899998764 44443
No 148
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0052 Score=70.12 Aligned_cols=158 Identities=13% Similarity=0.155 Sum_probs=92.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhcc
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAK 242 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (897)
..+.|+|..|+|||.|++++++.... ...-..++|++. .++..++...+... ......+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~-- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR-- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--
Confidence 45899999999999999999998632 112234566643 34444444433221 0112223332
Q ss_pred CeEEEEEcCCCcc---cccc-ccccCCCC-CCCCcEEEEEeCCc---------hhhcccccce-EeccCCCHHHHHHHHH
Q 043332 243 AKFVLILDDMWKE---FRLE-EVGIPEPS-EENGCKLVITTRSL---------GVCRFMDCKE-IGVELLSQEEALNLFL 307 (897)
Q Consensus 243 ~r~LlVlDdv~~~---~~~~-~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~-~~l~~L~~~ea~~Lf~ 307 (897)
+-=+|||||+... ..++ .+...+.. ...|..|||||+.. .+..++.... +.+++.+.+.-.+++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 2348899999643 1122 12111110 13355688888752 1223333333 8999999999999999
Q ss_pred HhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 308 DKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
+++..... .--++++.-|++.+.+..-.|..
T Consensus 457 kka~~r~l---~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 457 KKAVQEQL---NAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHHhcCC---CCCHHHHHHHHHhccCCHHHHHH
Confidence 88754322 22256778888888776554433
No 149
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.54 E-value=1.3e-05 Score=82.02 Aligned_cols=84 Identities=21% Similarity=0.174 Sum_probs=47.9
Q ss_pred ccccEEEccccccccCC----CCCCCCCCCccEEEccCCC---CcccCChh------HhhCCCCccEEEecCCCCC-cCC
Q 043332 497 ENLERVSLMKNNIKEIP----SYMSPHCDILSTLLLQANG---NLWTIPEC------FFVHMHGLKVLNLSHTDIE-VLP 562 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~---~~~~~~~~------~~~~l~~Lr~L~L~~~~i~-~lp 562 (897)
..++.+++++|.+..-. .....+-+.|+..+++.-. ....+|+. .+..+++|++||||+|-+. ..+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 46778888888654211 1112334577777776531 11223322 1345668888888888764 222
Q ss_pred ----cccccCcccceeeccccc
Q 043332 563 ----SSVSDLTNLRSLLLRYCL 580 (897)
Q Consensus 563 ----~~i~~l~~L~~L~L~~~~ 580 (897)
.-+.++..|+.|.|.+|.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC
Confidence 234567778888888774
No 150
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00018 Score=77.46 Aligned_cols=82 Identities=18% Similarity=0.435 Sum_probs=59.0
Q ss_pred CCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCC-CCcCCcccccCcccceeeccccccccCCcchhccccCCEe
Q 043332 519 HCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTD-IEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYL 597 (897)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L 597 (897)
.|.+++.|++++| .+..+|. -..+|+.|.+++|. ++.+|..+ ..+|++|++++|..+..+|. +|++|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----ccceE
Confidence 4678899999988 7777772 23469999998865 67778655 36899999999977777772 36666
Q ss_pred eccCCc---CcccCcccc
Q 043332 598 DLEATR---IEEVPEGME 612 (897)
Q Consensus 598 ~l~~~~---l~~lp~~~~ 612 (897)
++.++. +..+|.++.
T Consensus 118 ~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLT 135 (426)
T ss_pred EeCCCCCcccccCcchHh
Confidence 666553 456666544
No 151
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.52 E-value=1.4e-05 Score=89.77 Aligned_cols=103 Identities=28% Similarity=0.367 Sum_probs=50.5
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
.++..+++.+|.+..+... ...+++|++|++++| .+..+.. +..++.|+.|++++|.|+.+. .+..+..|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhcccc-hhhhhcchheecccc-ccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 3455556666655555331 234555555555555 4444433 234444555555555555443 2333555555555
Q ss_pred cccccccCCcc--hhccccCCEeeccCCcCc
Q 043332 577 RYCLRLRRVPS--VAKLLALHYLDLEATRIE 605 (897)
Q Consensus 577 ~~~~~~~~lp~--~~~l~~L~~L~l~~~~l~ 605 (897)
++| .+..+.. ...+..|+.+.+.+|.+.
T Consensus 170 ~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYN-RIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccc-hhhhhhhhhhhhccchHHHhccCCchh
Confidence 554 3333333 355555555555555443
No 152
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.51 E-value=0.0006 Score=75.35 Aligned_cols=170 Identities=15% Similarity=0.223 Sum_probs=90.7
Q ss_pred ccccchhhHHHHHHHHHHhc----C---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 139 ATLAGEKTKKVVERIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
.++.|+ ++.++++.+.+. . ...+-|.++|++|+|||++|+++++... .. |+.++.
T Consensus 131 ~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~---~~-----~i~v~~-- 198 (389)
T PRK03992 131 EDIGGL--EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---AT-----FIRVVG-- 198 (389)
T ss_pred HHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC---CC-----EEEeeh--
Confidence 367887 556666665442 1 2346689999999999999999999752 22 222221
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc------------c----ccccccCCC--C
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF------------R----LEEVGIPEP--S 267 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~------------~----~~~~~~~~~--~ 267 (897)
.++.... .+ .....+..+........+.+|+|||++... . +..+...+. .
T Consensus 199 --~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SELVQKF---IG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HHHhHhh---cc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111110 00 111223334433334457899999997521 0 111111111 1
Q ss_pred CCCCcEEEEEeCCchhhc-c-c--c-cce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 268 EENGCKLVITTRSLGVCR-F-M--D-CKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 268 ~~~gs~iivTTR~~~v~~-~-~--~-~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
...+..||.||...+... . . + ... +.+++.+.++-.++|+............. ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 123556777776533211 1 1 1 122 88999999999999987654322111122 344666666643
No 153
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=8.7e-06 Score=71.73 Aligned_cols=87 Identities=28% Similarity=0.426 Sum_probs=42.9
Q ss_pred CccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCEeecc
Q 043332 522 ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLE 600 (897)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~ 600 (897)
.|...++++| .+..+|+.+...++.+..|++++|.|+.+|..+..++.|+.|+++.|. +...| .+..|.+|-+|+..
T Consensus 54 el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 3444455554 444455554444445555555555555555555555555555555542 22233 34445555555555
Q ss_pred CCcCcccCcc
Q 043332 601 ATRIEEVPEG 610 (897)
Q Consensus 601 ~~~l~~lp~~ 610 (897)
++.+..+|..
T Consensus 132 ~na~~eid~d 141 (177)
T KOG4579|consen 132 ENARAEIDVD 141 (177)
T ss_pred CCccccCcHH
Confidence 5544444433
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0022 Score=68.37 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=103.4
Q ss_pred cccchhhHHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHHhhcc-------------CCCcEEEEEEeCCCC
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------NKFNVVIWVTVSQPL 205 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~~f~~~~wv~vs~~~ 205 (897)
+++|. +..++.+...+..+.+ ....++|+.|+||+++|..++...-... .|-| ..|+.-.-..
T Consensus 5 ~iiGq--~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~ 81 (314)
T PRK07399 5 NLIGQ--PLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQH 81 (314)
T ss_pred HhCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccc
Confidence 67897 7778888888887774 8999999999999999999988752211 1112 2333210000
Q ss_pred CHHHHHHHHHHHHcCC-CCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEe
Q 043332 206 DLIKLQNEIAAALNQS-LPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITT 278 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTT 278 (897)
+-..+-..-+...+.. .....-..+.++.+.+.+. .+.+-++|+|+++... ....+...+..-.+..-|++|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 0000000011111100 0001111233444444442 2456688999987542 2233332222112233344444
Q ss_pred CCchhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 279 RSLGVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 279 R~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
+...+.... .+..+++.++++++..+.+.+....... ......++..++|.|..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~------~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL------NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc------hhHHHHHHHHcCCCHHHHHH
Confidence 444443322 2334999999999999999876432211 11135788899999976544
No 155
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.0045 Score=66.45 Aligned_cols=206 Identities=13% Similarity=0.192 Sum_probs=115.9
Q ss_pred ccccccchhhHHHHHHHHHHhcC----CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 137 TTATLAGEKTKKVVERIWEDLMG----DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
++..++|| +.+.+.+.+|+.. +..+-+-|.|-+|.|||.+...++.+....... -+++++....-....+++.
T Consensus 148 ~p~~l~gR--e~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGR--ELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccch--HHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHH
Confidence 34578999 7777777777643 456789999999999999999999987432222 2446665554345566777
Q ss_pred HHHHHHcCCCCCChhHHHHHHHHHHHHhccC-eEEEEEcCCCcccc--ccccc--cCCCCCCCCcEEEEEeCCc--hhh-
Q 043332 213 EIAAALNQSLPENEDEVRRAGRLSGMLKAKA-KFVLILDDMWKEFR--LEEVG--IPEPSEENGCKLVITTRSL--GVC- 284 (897)
Q Consensus 213 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-r~LlVlDdv~~~~~--~~~~~--~~~~~~~~gs~iivTTR~~--~v~- 284 (897)
.|...+-..........+....+.+...+.+ -+|+|+|.++.-.. -..+. ..++ .-.++|+|+.---. +..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-KLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-cCCcceeeeeeehhhhhHHH
Confidence 7777662222222222444445555554444 68999999875210 01111 1112 13456666432211 111
Q ss_pred ------cc-cccce--EeccCCCHHHHHHHHHHhhhcccc--ccchhhHHHHHHHHHHhCCChHHHHHHHhhh
Q 043332 285 ------RF-MDCKE--IGVELLSQEEALNLFLDKVRISTS--QILNLDKEIINSVVEECAGLPLAIVTVASCM 346 (897)
Q Consensus 285 ------~~-~~~~~--~~l~~L~~~ea~~Lf~~~~~~~~~--~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L 346 (897)
.. ..... +..+|.+.++-.++|..+...... ..++.++-.|++++.-.|.+-.|+.+.-+++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11 12222 788999999999999987644321 1122333334444433444555555554443
No 156
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0025 Score=73.66 Aligned_cols=189 Identities=12% Similarity=0.128 Sum_probs=101.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|. +..++.+.+++..+. ...+.++|+.|+||||+|+.++........ - ...+++.......|...
T Consensus 16 ~~viGq--~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~-~-------~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQ--EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP-P-------DGEPCNECEICKAITNG 85 (559)
T ss_pred HhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-C-------CCCCCCccHHHHHHhcC
Confidence 479998 777888888887665 466788999999999999999887521110 0 00111111111222111
Q ss_pred HcCCC----CCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE-EeCCchhhcc
Q 043332 218 LNQSL----PENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI-TTRSLGVCRF 286 (897)
Q Consensus 218 l~~~~----~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~v~~~ 286 (897)
...+. .......+.++.+..... .+++-++|+|++... ..+..+...+.....+..+|+ ||....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 00000 000011122223332221 345668899999753 233333333322223444444 4444433322
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHH
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIV 340 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~ 340 (897)
. .+..+.+.+++.++....+...+..... .-..+.+..|++.++|.+..+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 1 2333889999999998888776643321 1124567788889988875443
No 157
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.00071 Score=78.14 Aligned_cols=45 Identities=29% Similarity=0.308 Sum_probs=36.6
Q ss_pred cccchhhHHHHHHHHHHhcCC-----CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGD-----KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+++|. ++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 85 el~~~--~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 85 ELAVH--KKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HhcCc--HHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 68887 66777788887642 24679999999999999999999875
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=2.1e-05 Score=69.35 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=65.6
Q ss_pred hCCCCccEEEecCCCCCcCCcccccC-cccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEE
Q 043332 543 VHMHGLKVLNLSHTDIEVLPSSVSDL-TNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYL 620 (897)
Q Consensus 543 ~~l~~Lr~L~L~~~~i~~lp~~i~~l-~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 620 (897)
.....|...+|++|.+..+|+.+... +.+++|++++| .+.++| .+..++.|+.|+++.|.+...|.-+..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 44556777888888888888776544 47778888875 667777 6777778888888887777777777777777777
Q ss_pred eCCCCCCCcCCCC
Q 043332 621 YLYSLPLKKFPTG 633 (897)
Q Consensus 621 ~l~~~~~~~~~~~ 633 (897)
+..+|....+|..
T Consensus 129 ds~~na~~eid~d 141 (177)
T KOG4579|consen 129 DSPENARAEIDVD 141 (177)
T ss_pred cCCCCccccCcHH
Confidence 7777666665543
No 159
>PRK08118 topology modulation protein; Reviewed
Probab=97.42 E-value=8.5e-05 Score=71.48 Aligned_cols=36 Identities=28% Similarity=0.664 Sum_probs=29.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEE
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW 198 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 198 (897)
+.|.|+|++|+||||||+.+++......-+||.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987444456787886
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0012 Score=78.39 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=88.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCC---CcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
.++|| ++++.++++.|......-+.++|.+|+|||++|+.++......... .++.+|.. +...++.
T Consensus 187 ~liGR--~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~lla---- 255 (758)
T PRK11034 187 PLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLA---- 255 (758)
T ss_pred cCcCC--CHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhc----
Confidence 68999 7889999998877555556789999999999999999875221111 23444421 1111110
Q ss_pred HHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc----------ccccccccCCCCCCCC-cEEEEEeCCchh--
Q 043332 217 ALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE----------FRLEEVGIPEPSEENG-CKLVITTRSLGV-- 283 (897)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~----------~~~~~~~~~~~~~~~g-s~iivTTR~~~v-- 283 (897)
+.. ...+.......+...+.+..+.+|++|++..- .+...+..++. ..| -+||-+|...+.
T Consensus 256 --G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 --GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred --ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHH
Confidence 110 11223344445555554455779999998642 11111222222 233 345545543332
Q ss_pred --------hcccccceEeccCCCHHHHHHHHHHhh
Q 043332 284 --------CRFMDCKEIGVELLSQEEALNLFLDKV 310 (897)
Q Consensus 284 --------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 310 (897)
.++. ..+.+++.+.++..+++....
T Consensus 330 ~~~~D~AL~rRF--q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRF--QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHH
Confidence 2222 238999999999999997643
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0048 Score=66.13 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=86.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCC-------CCCChhHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQS-------LPENEDEVRRAGR 234 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~~ 234 (897)
...+.++|+.|+||||+|+.++...-.... .+ ...++.-...+.+...-..+ ........+.++.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~-~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAP-QG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCC-CC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 567889999999999999999888632110 00 00000001111111000000 0000111233333
Q ss_pred HHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCCc-hhhcc--cccceEeccCCCHHHHHHH
Q 043332 235 LSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRSL-GVCRF--MDCKEIGVELLSQEEALNL 305 (897)
Q Consensus 235 l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~L 305 (897)
+.+.+. .+++-++|+|+++... ....+...+..-..++.+|+||.+. .+... ..+..+.+.+++.+++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 333322 2334456789998642 2333332232223466677777664 33322 2244499999999999988
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 306 FLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 306 f~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+....... ..+.+..++..++|.|..+..+
T Consensus 174 L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 87653111 1234566788999999765444
No 162
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.38 E-value=0.0011 Score=73.49 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=70.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|+|||++|+++++... ..| +.+..+. +.... ++ .....+..+......
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~---~~f---i~V~~se------L~~k~---~G-------e~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETS---ATF---LRVVGSE------LIQKY---LG-------DGPKLVRELFRVAEE 274 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC---CCE---EEEecch------hhhhh---cc-------hHHHHHHHHHHHHHh
Confidence 45688999999999999999999752 233 1121111 11100 00 111223334443334
Q ss_pred cCeEEEEEcCCCcccc----------------ccccccCCC--CCCCCcEEEEEeCCchhhcc--c--cc-ce-EeccCC
Q 043332 242 KAKFVLILDDMWKEFR----------------LEEVGIPEP--SEENGCKLVITTRSLGVCRF--M--DC-KE-IGVELL 297 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~----------------~~~~~~~~~--~~~~gs~iivTTR~~~v~~~--~--~~-~~-~~l~~L 297 (897)
+.+.+|+||+++.... +..+...+. ....+.+||.||...+.... . +. .. +.+...
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P 354 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP 354 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence 5678999999753210 001111111 11235678888875433221 1 11 22 889999
Q ss_pred CHHHHHHHHHHhhh
Q 043332 298 SQEEALNLFLDKVR 311 (897)
Q Consensus 298 ~~~ea~~Lf~~~~~ 311 (897)
+.++..++|...+.
T Consensus 355 d~~~R~~Il~~~~~ 368 (438)
T PTZ00361 355 DEKTKRRIFEIHTS 368 (438)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987654
No 163
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.38 E-value=0.00073 Score=82.26 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=90.7
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCC---CcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
.++|| +++++++++.|......-+.++|++|+|||++|+.++......... -+..+|.- +...++.
T Consensus 180 ~~igr--~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~a---- 248 (821)
T CHL00095 180 PVIGR--EKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLLA---- 248 (821)
T ss_pred CCCCc--HHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHhc----
Confidence 68999 8899999999987666667799999999999999999986321111 12344431 2111111
Q ss_pred HHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---------cccccccCCCCCCCC-cEEEEEeCCchhhc-
Q 043332 217 ALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---------RLEEVGIPEPSEENG-CKLVITTRSLGVCR- 285 (897)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---------~~~~~~~~~~~~~~g-s~iivTTR~~~v~~- 285 (897)
+.. -..+..+.+..+...+...++.+|++|++..-. +...+..+.. ..| -++|.+|...+...
T Consensus 249 --g~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 --GTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRKH 322 (821)
T ss_pred --cCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHHH
Confidence 111 122334455566666555568999999985321 1122222221 223 35665665544321
Q ss_pred -----cc--ccceEeccCCCHHHHHHHHHHh
Q 043332 286 -----FM--DCKEIGVELLSQEEALNLFLDK 309 (897)
Q Consensus 286 -----~~--~~~~~~l~~L~~~ea~~Lf~~~ 309 (897)
.+ ....+.+...+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 11 1122788888999988888753
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.37 E-value=0.00055 Score=63.98 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=48.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhcc
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAK 242 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (897)
..+.|+|++|+||||+|+.++..... ....++++..+........... ....... ............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999998631 1123555554433222111111 1111111 11122223333444444333
Q ss_pred CeEEEEEcCCCccc
Q 043332 243 AKFVLILDDMWKEF 256 (897)
Q Consensus 243 ~r~LlVlDdv~~~~ 256 (897)
+..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 34899999998753
No 165
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.012 Score=66.89 Aligned_cols=63 Identities=32% Similarity=0.366 Sum_probs=45.7
Q ss_pred cccchhhHHHHHHHHHHhc------CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 210 (897)
+-+|- ++.+++|++.|. .-+.+++.+||++|+|||+|++.++.... ..| +-++++.-.|..++
T Consensus 324 dHYGL--ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~---Rkf---vR~sLGGvrDEAEI 392 (782)
T COG0466 324 DHYGL--EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG---RKF---VRISLGGVRDEAEI 392 (782)
T ss_pred cccCc--hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC---CCE---EEEecCccccHHHh
Confidence 55676 788899999884 22358999999999999999999999873 222 33455555554444
No 166
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0026 Score=70.34 Aligned_cols=132 Identities=21% Similarity=0.201 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCCCCCCh
Q 043332 148 KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQSLPENE 226 (897)
Q Consensus 148 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~ 226 (897)
....++++.+..... ++.|+|+-++||||+++.+..... .. .+++..-+.. +..++ .+...
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l-~d~~~---------- 85 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIEL-LDLLR---------- 85 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhH-HHHHH----------
Confidence 445555555554444 999999999999999977766542 11 4555433321 11111 11111
Q ss_pred hHHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhh-----ccc-ccce-EeccCCCH
Q 043332 227 DEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVC-----RFM-DCKE-IGVELLSQ 299 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~-----~~~-~~~~-~~l~~L~~ 299 (897)
...... ..++..++||.|.....|+.....+.+.++. +|++|+-+.... ... +-.. +.+.||+.
T Consensus 86 -------~~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 86 -------AYIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -------HHHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 111111 1267899999999999998877776665555 888888775442 222 2222 89999999
Q ss_pred HHHHHHH
Q 043332 300 EEALNLF 306 (897)
Q Consensus 300 ~ea~~Lf 306 (897)
.|-..+-
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 9987654
No 167
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.28 E-value=0.0027 Score=71.11 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=86.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
..-+.|+|+.|+|||+|++++++.... ....+++++. ..+...+...+... . .......+ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~------~~f~~~~~~~l~~~------~---~~~f~~~~-~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS------ELFTEHLVSAIRSG------E---MQRFRQFY-R 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH------HHHHHHHHHHHhcc------h---HHHHHHHc-c
Confidence 356889999999999999999998732 1233555542 33444554444321 0 11122222 2
Q ss_pred cCeEEEEEcCCCcccc----ccccccCCCC-CCCCcEEEEEeCCc---------hhhcccccce-EeccCCCHHHHHHHH
Q 043332 242 KAKFVLILDDMWKEFR----LEEVGIPEPS-EENGCKLVITTRSL---------GVCRFMDCKE-IGVELLSQEEALNLF 306 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~----~~~~~~~~~~-~~~gs~iivTTR~~---------~v~~~~~~~~-~~l~~L~~~ea~~Lf 306 (897)
..-+|++||+..... .+++...+.. ...|..||+||... .+..++.... +++.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 234889999865321 1122211110 02355788888642 1222333333 889999999999999
Q ss_pred HHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 307 LDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
.+++..... .-.+++..-|++.+.|.-
T Consensus 281 ~~k~~~~~~---~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSI---RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCC---CCCHHHHHHHHHhcCCCH
Confidence 887754321 112456666777776554
No 168
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.24 E-value=0.0027 Score=69.86 Aligned_cols=149 Identities=14% Similarity=0.153 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|+|||++|+++++... ..| +.+.. ..+.... ++ .....+..+......
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~---~~f---i~i~~------s~l~~k~---~g-------e~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT---ATF---IRVVG------SEFVQKY---LG-------EGPRMVRDVFRLARE 236 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEeh------HHHHHHh---cc-------hhHHHHHHHHHHHHh
Confidence 56789999999999999999999752 222 12211 1111110 11 112233344444445
Q ss_pred cCeEEEEEcCCCccc------------c----ccccccCCC--CCCCCcEEEEEeCCchhh-cc-c--c-cce-EeccCC
Q 043332 242 KAKFVLILDDMWKEF------------R----LEEVGIPEP--SEENGCKLVITTRSLGVC-RF-M--D-CKE-IGVELL 297 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~------------~----~~~~~~~~~--~~~~gs~iivTTR~~~v~-~~-~--~-~~~-~~l~~L 297 (897)
..+.+|++|+++... . +..+...+. ....+..||.||...+.. .. . + -.. +.++..
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 678999999986421 0 111111111 112456788888754332 11 1 1 122 788888
Q ss_pred CHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 298 SQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 298 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
+.++...+|.............+ ..++++...|.-
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 88888888876543321111122 344566666654
No 169
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.0002 Score=84.03 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=83.1
Q ss_pred CCccEEEccCCCCc-ccCChhHhhCCCCccEEEecCCCCC--cCCcccccCcccceeeccccccccCCcchhccccCCEe
Q 043332 521 DILSTLLLQANGNL-WTIPECFFVHMHGLKVLNLSHTDIE--VLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYL 597 (897)
Q Consensus 521 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L 597 (897)
.+|+.|+++|...+ ...|..+...+|.|+.|.+++-.+. .+-.-..++++|+.||+|++ .++.+..+++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence 47888888776332 2234555567888888888886653 33333457788888888885 67777778888888888
Q ss_pred eccCCcCcccC--ccccCCCCCCEEeCCCCCCCcCCC------CcccCCcccCeEecc
Q 043332 598 DLEATRIEEVP--EGMEMLENLSYLYLYSLPLKKFPT------GILPRLRDLYKLKLS 647 (897)
Q Consensus 598 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~------~~l~~l~~L~~L~l~ 647 (897)
.+.+=.+..-+ ..+.+|++|+.||+|.......+. +.-..|++|+.|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 88765555432 346778888888888654322220 001236777777777
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.21 E-value=0.016 Score=58.00 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=37.0
Q ss_pred cccccccchhhHHHHHHHH----HHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 136 LTTATLAGEKTKKVVERIW----EDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 136 ~~~~~~vGr~~~~~~~~l~----~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
++...++|. +..++.|+ .++.+....-+.+||..|.|||++++++.+.+.
T Consensus 24 ~~l~~L~Gi--e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 24 IRLDDLIGI--ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CCHHHhcCH--HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 344578997 44444444 355555566788899999999999999999874
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00079 Score=62.13 Aligned_cols=68 Identities=26% Similarity=0.311 Sum_probs=42.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccC-
Q 043332 165 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKA- 243 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~- 243 (897)
|.|+|++|+||||+|+.+++... + .++.++.+.-.+ ....+....+..+.+......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~-~~~~i~~~~~~~----------------~~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----F-PFIEIDGSELIS----------------SYAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----S-EEEEEETTHHHT----------------SSTTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----c-cccccccccccc----------------cccccccccccccccccccccc
Confidence 57999999999999999999862 1 134444332210 012233334444444443343
Q ss_pred eEEEEEcCCCc
Q 043332 244 KFVLILDDMWK 254 (897)
Q Consensus 244 r~LlVlDdv~~ 254 (897)
+.+|++||++.
T Consensus 59 ~~vl~iDe~d~ 69 (132)
T PF00004_consen 59 PCVLFIDEIDK 69 (132)
T ss_dssp SEEEEEETGGG
T ss_pred ceeeeeccchh
Confidence 79999999975
No 172
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.17 E-value=0.016 Score=57.69 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=103.4
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHHHHHcCCCCCCh--hHHHHHHHH
Q 043332 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIAAALNQSLPENE--DEVRRAGRL 235 (897)
Q Consensus 159 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l 235 (897)
.++-+++.++|.-|+|||.++++...... -+.++-|.+.. ..+...+...|+..+..+..... ...+....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 34557999999999999999996665542 12222244333 34566777888877766322111 112233334
Q ss_pred HHHHhccCe-EEEEEcCCCcc--cccccccc--CCC-CCCCCcEEEEEeCCc-------hhhccc--ccce-EeccCCCH
Q 043332 236 SGMLKAKAK-FVLILDDMWKE--FRLEEVGI--PEP-SEENGCKLVITTRSL-------GVCRFM--DCKE-IGVELLSQ 299 (897)
Q Consensus 236 ~~~l~~~~r-~LlVlDdv~~~--~~~~~~~~--~~~-~~~~gs~iivTTR~~-------~v~~~~--~~~~-~~l~~L~~ 299 (897)
.....+++| ..+++||..+. ..++.+.. .+. +....-+|+..-..+ .+.+.. .+.. |.+.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 444556777 99999998653 22222211 111 111111233322110 111111 1222 89999999
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHh
Q 043332 300 EEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVAS 344 (897)
Q Consensus 300 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~ 344 (897)
++...++..+......+.+--..+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999988887765543322223356677899999999999987754
No 173
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.00058 Score=64.83 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=6.6
Q ss_pred ccCCcccCeEecc
Q 043332 635 LPRLRDLYKLKLS 647 (897)
Q Consensus 635 l~~l~~L~~L~l~ 647 (897)
+.++++|++|++.
T Consensus 136 l~klp~l~~LDF~ 148 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQ 148 (233)
T ss_pred EEecCcceEeehh
Confidence 3445555555554
No 174
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.016 Score=61.50 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhcc----------------CCCcEEEEEEe-CCCCCHH
Q 043332 147 KKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET----------------NKFNVVIWVTV-SQPLDLI 208 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~~f~~~~wv~v-s~~~~~~ 208 (897)
+...+.+...+..+. ...+.++|+.|+||+++|..++...-... .|-| ..|+.. .+..+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~- 87 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGD- 87 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccc-
Confidence 445667777777666 45799999999999999999988753211 0111 111110 000000
Q ss_pred HHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCC-c
Q 043332 209 KLQNEIAAALNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRS-L 281 (897)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~-~ 281 (897)
. ....-..+.++.+.+.+. .+++-++|+|+++... .-..+...+..-..++.+|++|.+ .
T Consensus 88 ------------k-~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 88 ------------K-LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred ------------c-ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 0 000112334444444332 2456689999997642 222222222222346666666654 4
Q ss_pred hhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 282 GVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 282 ~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
.+..-. .+..+.+.+++.+++.+.+... +.+ .+.+..++..++|.|+.+..+
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHH
Confidence 443222 2444899999999998888643 111 233667899999999866443
No 175
>PRK08116 hypothetical protein; Validated
Probab=97.12 E-value=0.0011 Score=69.00 Aligned_cols=102 Identities=29% Similarity=0.326 Sum_probs=57.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhcc
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAK 242 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (897)
.-+.++|..|+|||.||.++++..... ...+++++ ..+++..|........ ... ...+.+.+. .
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l~-~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSLV-N 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHhc-C
Confidence 458899999999999999999997322 33456664 3345555544443211 111 112333342 2
Q ss_pred CeEEEEEcCCCc--ccccc--ccccCCCC-CCCCcEEEEEeCCc
Q 043332 243 AKFVLILDDMWK--EFRLE--EVGIPEPS-EENGCKLVITTRSL 281 (897)
Q Consensus 243 ~r~LlVlDdv~~--~~~~~--~~~~~~~~-~~~gs~iivTTR~~ 281 (897)
.. ||||||+.. ..+|. .+...+.. ...|..+|+||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 23 899999943 22332 12111110 13456799998743
No 176
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.11 E-value=0.0037 Score=76.11 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=85.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCC----CcE-EEEEEeCCCCCHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNV-VIWVTVSQPLDLIKLQNEI 214 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~-~~wv~vs~~~~~~~~~~~i 214 (897)
.++|| +.++.++++.|......-+.++|.+|+|||++|+.++..... ... .+. ++++.++. +..
T Consensus 179 ~vigr--~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~vp~~l~~~~~~~l~l~~------l~a-- 247 (857)
T PRK10865 179 PVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPEGLKGRRVLALDMGA------LVA-- 247 (857)
T ss_pred cCCCC--HHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc-CCCchhhCCCEEEEEehhh------hhh--
Confidence 68999 778999999998777767789999999999999999998621 110 122 22332222 110
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHHHh-ccCeEEEEEcCCCccc---------cccccccCCCCCCCC-cEEEEEeCCchh
Q 043332 215 AAALNQSLPENEDEVRRAGRLSGMLK-AKAKFVLILDDMWKEF---------RLEEVGIPEPSEENG-CKLVITTRSLGV 283 (897)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~---------~~~~~~~~~~~~~~g-s~iivTTR~~~v 283 (897)
+ .....+....+..+...+. .+.+.+|++|++..-. +...+..|.. ..| -++|-||...+.
T Consensus 248 ----g--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 ----G--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEY 319 (857)
T ss_pred ----c--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHH
Confidence 0 0001122333444444432 3468899999986431 1122222322 233 355555554432
Q ss_pred hc--------ccccceEeccCCCHHHHHHHHHHhh
Q 043332 284 CR--------FMDCKEIGVELLSQEEALNLFLDKV 310 (897)
Q Consensus 284 ~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~ 310 (897)
.. .-....+.+..-+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 0111235666668888888886543
No 177
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.021 Score=60.81 Aligned_cols=175 Identities=10% Similarity=0.091 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCC-----
Q 043332 149 VVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSL----- 222 (897)
Q Consensus 149 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----- 222 (897)
.-+.+...+..+. ...+.+.|+.|+||+++|+.++...-.... .. ...++.-...+.+...-..+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~-~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTP-QG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCC-CC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 4456666776655 468889999999999999999887632110 00 001111111111111000000
Q ss_pred -CCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCC-chhhccc--ccceE
Q 043332 223 -PENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRS-LGVCRFM--DCKEI 292 (897)
Q Consensus 223 -~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~--~~~~~ 292 (897)
....-..+.++.+.+.+. .+++-++|+|+++... ....+...+..-..++.+|++|.+ ..+..-. .+..+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 001112334444444332 3456688899997642 223332222222345666666655 3443222 34459
Q ss_pred eccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 293 GVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 293 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.+.++++++..+.+....... ...+...+..++|.|..+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 999999999998887653211 112556788899999643
No 178
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.10 E-value=0.0059 Score=74.71 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=86.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCC----CcEEEEEEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
.++|| +.++.++++.|......-+.++|.+|+|||++|+.++..... ... .+..+|.- +...+..
T Consensus 174 ~~igr--~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~a--- 242 (852)
T TIGR03346 174 PVIGR--DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALIA--- 242 (852)
T ss_pred cCCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHhh---
Confidence 68999 778999999997766666779999999999999999998621 110 12233321 1111110
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhc-cCeEEEEEcCCCccc---------cccccccCCCCCCCCc-EEEEEeCCchhh
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKA-KAKFVLILDDMWKEF---------RLEEVGIPEPSEENGC-KLVITTRSLGVC 284 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~---------~~~~~~~~~~~~~~gs-~iivTTR~~~v~ 284 (897)
+. ....+....+..+...+.+ +++.+|++|++..-. +...+..+.. ..|. ++|-+|...+.-
T Consensus 243 ---~~--~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 ---GA--KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYR 315 (852)
T ss_pred ---cc--hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHH
Confidence 00 0011223344445554432 458999999987431 1112222222 2333 455455443321
Q ss_pred cc--------cccceEeccCCCHHHHHHHHHHh
Q 043332 285 RF--------MDCKEIGVELLSQEEALNLFLDK 309 (897)
Q Consensus 285 ~~--------~~~~~~~l~~L~~~ea~~Lf~~~ 309 (897)
.. -....+.++..+.++...++...
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 10 01122788888999999988754
No 179
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.09 E-value=0.0013 Score=62.46 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=37.8
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC--cccccCcccceee
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP--SSVSDLTNLRSLL 575 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp--~~i~~l~~L~~L~ 575 (897)
....+++++|++..++. ++.++.|.+|.+.+| .+..+.+.+-..+++|..|.|.+|.|..+- ..+..|+.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34445555555444432 344555555555555 444444444444455555555555544332 1233444555555
Q ss_pred cccc
Q 043332 576 LRYC 579 (897)
Q Consensus 576 L~~~ 579 (897)
+-+|
T Consensus 120 ll~N 123 (233)
T KOG1644|consen 120 LLGN 123 (233)
T ss_pred ecCC
Confidence 4444
No 180
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00022 Score=71.32 Aligned_cols=101 Identities=25% Similarity=0.239 Sum_probs=54.1
Q ss_pred CccEEEecCCCCCcCCc--cc-ccCcccceeecccccccc--CCcc-hhccccCCEeeccCCcCcccCccc-cCCCCCCE
Q 043332 547 GLKVLNLSHTDIEVLPS--SV-SDLTNLRSLLLRYCLRLR--RVPS-VAKLLALHYLDLEATRIEEVPEGM-EMLENLSY 619 (897)
Q Consensus 547 ~Lr~L~L~~~~i~~lp~--~i-~~l~~L~~L~L~~~~~~~--~lp~-~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~ 619 (897)
-+..|-+.++.|...-. .+ ..+.+++.|||.+|.... ++.+ +.+|+.|++|+++.|.+..--..+ -.+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34466666766654322 23 246777888888863221 2222 456777888888777554211111 23456777
Q ss_pred EeCCCCCCCcCC-CCcccCCcccCeEecc
Q 043332 620 LYLYSLPLKKFP-TGILPRLRDLYKLKLS 647 (897)
Q Consensus 620 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~ 647 (897)
|-+.++.+..-- ...+..++.++.|.++
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 777666533211 1124555555666555
No 181
>CHL00176 ftsH cell division protein; Validated
Probab=97.08 E-value=0.0066 Score=70.86 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=91.5
Q ss_pred ccccchh-hHHHHHHHHHHhcCCC---------eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHH
Q 043332 139 ATLAGEK-TKKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (897)
Q Consensus 139 ~~~vGr~-~~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 208 (897)
.+++|.+ ..+.+.++++++.... .+-|.++|++|+|||++|+++++... .. |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~---~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE---VP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC-----eeeccHH----
Confidence 3677863 2445566666665421 34689999999999999999998751 12 2332211
Q ss_pred HHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------------cccccccCCC--CCCC
Q 043332 209 KLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------------RLEEVGIPEP--SEEN 270 (897)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------------~~~~~~~~~~--~~~~ 270 (897)
++.... .+ .....+..+........+++|++||++... .+..+..... ....
T Consensus 251 ~f~~~~---~g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 EFVEMF---VG-------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHh---hh-------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111100 00 011233344444445678999999996421 0111211111 1234
Q ss_pred CcEEEEEeCCchhhc-c---cc-cce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCC
Q 043332 271 GCKLVITTRSLGVCR-F---MD-CKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGL 335 (897)
Q Consensus 271 gs~iivTTR~~~v~~-~---~~-~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 335 (897)
+..||.||...+... . .+ -.. +.+...+.++-.++++..+..... . .......+++.+.|.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--~--~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--S--PDVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--c--hhHHHHHHHhcCCCC
Confidence 556666766533221 1 11 112 778888888888888877654211 1 122345677777763
No 182
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.06 E-value=0.0037 Score=70.41 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred cccchhhHHHHHHHHHHhc----C---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhcc--CCCcEEEEEEeCCC
Q 043332 140 TLAGEKTKKVVERIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQP 204 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~vs~~ 204 (897)
++.|. +..++++.+.+. . ...+-|.++|++|.|||++|+++++...... ..+....|+.+...
T Consensus 183 dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 183 DIGGL--DSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HcCCh--HHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 56676 555555555432 1 1245689999999999999999999863110 01123344444331
Q ss_pred CCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH----hccCeEEEEEcCCCccc---------cc-----cccccCCC
Q 043332 205 LDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML----KAKAKFVLILDDMWKEF---------RL-----EEVGIPEP 266 (897)
Q Consensus 205 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~r~LlVlDdv~~~~---------~~-----~~~~~~~~ 266 (897)
++... . .......+..+.... ..+++++|+||+++... +. ..+...+.
T Consensus 261 ----eLl~k----y------vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 ----ELLNK----Y------VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ----hhccc----c------cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 11110 0 001111222222222 23568999999997421 11 11211121
Q ss_pred C--CCCCcEEEEEeCCchhhc----cccc-ce-EeccCCCHHHHHHHHHHhhhc
Q 043332 267 S--EENGCKLVITTRSLGVCR----FMDC-KE-IGVELLSQEEALNLFLDKVRI 312 (897)
Q Consensus 267 ~--~~~gs~iivTTR~~~v~~----~~~~-~~-~~l~~L~~~ea~~Lf~~~~~~ 312 (897)
. ...+..||.||...+... +.+. .. ++++..+.++..++|..+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 113344555665433211 1112 22 899999999999999887643
No 183
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.06 E-value=0.0042 Score=66.39 Aligned_cols=103 Identities=13% Similarity=0.168 Sum_probs=66.2
Q ss_pred HHHHHHHhcC-CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcE-EEEEEeCCC-CCHHHHHHHHHHHHcCCCCCCh
Q 043332 150 VERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQP-LDLIKLQNEIAAALNQSLPENE 226 (897)
Q Consensus 150 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~ 226 (897)
..++++.+.. .....+.|+|..|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++...+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3446666653 3345679999999999999999999863 223344 467666654 4678888888887765443222
Q ss_pred hHH-----HHHHHHHHHH-hccCeEEEEEcCCCc
Q 043332 227 DEV-----RRAGRLSGML-KAKAKFVLILDDMWK 254 (897)
Q Consensus 227 ~~~-----~~~~~l~~~l-~~~~r~LlVlDdv~~ 254 (897)
... ..+....+++ .++++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111 1222222333 358899999999854
No 184
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.99 E-value=0.0023 Score=64.39 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=29.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 202 (897)
.++|+|..|+||||++..+.... ...|..+++++-.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEecC
Confidence 57899999999999999998876 3678888877543
No 185
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.98 E-value=0.014 Score=66.98 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=87.2
Q ss_pred cccchhh-HHHHHHHHHHhcC---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHH
Q 043332 140 TLAGEKT-KKVVERIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (897)
Q Consensus 140 ~~vGr~~-~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 209 (897)
+++|.+. .+.+.++++++.. ...+-+.++|++|+|||++|+.+++... .. ++.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~-----~~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG---VP-----FFSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---CC-----eeeccH----HH
Confidence 6788632 2334445555432 1234588999999999999999998751 12 222221 11
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc----------------ccccccCCC--CCCCC
Q 043332 210 LQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR----------------LEEVGIPEP--SEENG 271 (897)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~~~~~~~--~~~~g 271 (897)
+.... .+ .....+..+........+.+|++||++.... +..+...+. ....+
T Consensus 124 ~~~~~---~g-------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 FVEMF---VG-------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHH---hc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11111 01 0112233344444345678999999964210 011111111 11234
Q ss_pred cEEEEEeCCchh-hc---cc-ccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 272 CKLVITTRSLGV-CR---FM-DCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 272 s~iivTTR~~~v-~~---~~-~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
-.||.||...+. -. .. .-.. +.++..+.++-.++|......... .+ ......+++.+.|.-
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--AP--DVDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--Cc--chhHHHHHHhCCCCC
Confidence 455556654321 11 11 1222 788888888888888876543221 11 112346777777743
No 186
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.98 E-value=0.015 Score=69.78 Aligned_cols=46 Identities=28% Similarity=0.300 Sum_probs=37.7
Q ss_pred ccccchhhHHHHHHHHHHhcC------CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+.+|. ++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~--~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGL--ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCH--HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 357886 7788888887752 245689999999999999999999875
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.013 Score=63.68 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
+..+.+.|++|+|||+||.+++.. ..|..+--++..+-.... +......+......-.+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~s----------------EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLS----------------ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCcc----------------HHHHHHHHHHHHHHhhc
Confidence 566789999999999999999986 466655444321111000 01111112222221113
Q ss_pred cCeEEEEEcCCCccccccccccCC---------------CCCCCCcEEEEEeCCchhhcccccc---e--EeccCCCH-H
Q 043332 242 KAKFVLILDDMWKEFRLEEVGIPE---------------PSEENGCKLVITTRSLGVCRFMDCK---E--IGVELLSQ-E 300 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~~~~~~~~~---------------~~~~~gs~iivTTR~~~v~~~~~~~---~--~~l~~L~~-~ 300 (897)
..--.||+||+..-.+|-.+++.+ |..++.--|+-||....|.+.|+-. . |.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 345689999998777766554432 2222333344577777887777532 2 88988887 7
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHh
Q 043332 301 EALNLFLDKVRISTSQILNLDKEIINSVVEEC 332 (897)
Q Consensus 301 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 332 (897)
+..+.++..--. .+...+.++.+.+.+|
T Consensus 677 ~~~~vl~~~n~f----sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELNIF----SDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHccCC----CcchhHHHHHHHhccc
Confidence 777777553211 1233455666666666
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.013 Score=63.20 Aligned_cols=145 Identities=14% Similarity=0.116 Sum_probs=81.9
Q ss_pred cccc-hhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------CCCcEEEE
Q 043332 140 TLAG-EKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIW 198 (897)
Q Consensus 140 ~~vG-r~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~w 198 (897)
.++| . +..++.+...+..++ .....++|+.|+||||+|+.+++..-... .|.|....
T Consensus 6 ~i~~~q--~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQ--PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhH--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 4566 4 556777777777665 56779999999999999999988752111 01121111
Q ss_pred EEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCc
Q 043332 199 VTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGC 272 (897)
Q Consensus 199 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs 272 (897)
...+.. ...+.+..+.+.+. .+.+-++|+|+++... ....+...+.....++
T Consensus 84 ~~~~~~----------------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~ 141 (329)
T PRK08058 84 APDGQS----------------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGT 141 (329)
T ss_pred cccccc----------------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCc
Confidence 110111 11122233333221 2345578999986532 2233333333224566
Q ss_pred EEEEEeCC-chhhccc--ccceEeccCCCHHHHHHHHHH
Q 043332 273 KLVITTRS-LGVCRFM--DCKEIGVELLSQEEALNLFLD 308 (897)
Q Consensus 273 ~iivTTR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~ 308 (897)
.+|++|.+ ..+.... .+..+++.++++++..+.+.+
T Consensus 142 ~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 142 TAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred eEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 67777665 3333222 233489999999999888764
No 189
>PRK07261 topology modulation protein; Provisional
Probab=96.96 E-value=0.0014 Score=63.31 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=26.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEE
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW 198 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 198 (897)
.|.|+|++|+||||||+++........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998875322234566666
No 190
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.026 Score=60.70 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCC----C
Q 043332 148 KVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQS----L 222 (897)
Q Consensus 148 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~----~ 222 (897)
..-+++.+.+..+. ...+.+.|+.|+||+++|..++...--.... +. ..++.-.-.+.+...-..+ .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~-~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQ-GH-------KSCGHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCC-CC-------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 34566777776655 5688899999999999999988876221100 00 0000000111110000000 0
Q ss_pred CC---ChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCC-chhhcc--cccc
Q 043332 223 PE---NEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRS-LGVCRF--MDCK 290 (897)
Q Consensus 223 ~~---~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~--~~~~ 290 (897)
++ ..-..+.++.+.+.+. .+++-++|+|+++... ....+...+..-..++.+|++|.+ ..+..- ..+.
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 00 0112333444444332 3456688999987642 222332222222345666666654 444422 2244
Q ss_pred eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 291 EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 291 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.+.+.+++.+++.+.+....+.+ .+.+..++..++|.|..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHH
Confidence 48999999999988886543211 233667899999999644
No 191
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.87 E-value=0.017 Score=70.09 Aligned_cols=45 Identities=40% Similarity=0.385 Sum_probs=35.3
Q ss_pred cccchhhHHHHHHHHHHhcC------CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. ++.++++.+++.. ...+++.++|++|+|||++|+.+++..
T Consensus 321 ~~~G~--~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGL--KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCCh--HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 57786 6677777775531 234689999999999999999999986
No 192
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.015 Score=65.58 Aligned_cols=65 Identities=26% Similarity=0.288 Sum_probs=47.6
Q ss_pred cccccchhhHHHHHHHHHHhcC------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 210 (897)
..+-+|. +..+++|++++.- -+.+++..+|++|+|||++|+.|+....+ .+ +-++|+.-.|..++
T Consensus 410 deDHYgm--~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kF----fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 410 DEDHYGM--EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KF----FRFSVGGMTDVAEI 480 (906)
T ss_pred cccccch--HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ce----EEEeccccccHHhh
Confidence 3356776 7788899988742 24689999999999999999999998742 22 33566666665554
No 193
>PRK08181 transposase; Validated
Probab=96.82 E-value=0.018 Score=59.76 Aligned_cols=80 Identities=20% Similarity=0.120 Sum_probs=46.9
Q ss_pred HHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHH
Q 043332 153 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRA 232 (897)
Q Consensus 153 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 232 (897)
.-+|+.. ..-+.++|++|+|||.||.++++.... ....+.|+++ .++...+...... .. .
T Consensus 99 ~~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~------~~L~~~l~~a~~~-----~~----~ 158 (269)
T PRK08181 99 GDSWLAK--GANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT------TDLVQKLQVARRE-----LQ----L 158 (269)
T ss_pred HHHHHhc--CceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH------HHHHHHHHHHHhC-----Cc----H
Confidence 3346543 345899999999999999999997632 2234555543 4455555332111 11 1
Q ss_pred HHHHHHHhccCeEEEEEcCCCc
Q 043332 233 GRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 233 ~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
....+.+. +.=|||+||+..
T Consensus 159 ~~~l~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 159 ESAIAKLD--KFDLLILDDLAY 178 (269)
T ss_pred HHHHHHHh--cCCEEEEecccc
Confidence 12233332 234999999954
No 194
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.033 Score=60.49 Aligned_cols=134 Identities=21% Similarity=0.250 Sum_probs=79.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCc-EEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML 239 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (897)
....+.|||..|.|||.|++++.+... . ...+ .+++++ .+......+..+.. ..+....+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~-~-~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL-A-NGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH-h-hCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 368899999999999999999999873 2 2222 344443 22333333333321 1122333333
Q ss_pred hccCeEEEEEcCCCccc---ccc-ccccCCCC-CCCCcEEEEEeCC---------chhhcccccce-EeccCCCHHHHHH
Q 043332 240 KAKAKFVLILDDMWKEF---RLE-EVGIPEPS-EENGCKLVITTRS---------LGVCRFMDCKE-IGVELLSQEEALN 304 (897)
Q Consensus 240 ~~~~r~LlVlDdv~~~~---~~~-~~~~~~~~-~~~gs~iivTTR~---------~~v~~~~~~~~-~~l~~L~~~ea~~ 304 (897)
.-=++++||++.-. .++ ++...+.. ...|-.||+|++. ..+..++.+.- +++.+.+.+....
T Consensus 175 ---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 ---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred ---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 12388999997521 122 22211110 1334489999964 23334444445 8999999999999
Q ss_pred HHHHhhhccc
Q 043332 305 LFLDKVRIST 314 (897)
Q Consensus 305 Lf~~~~~~~~ 314 (897)
++.+++....
T Consensus 252 iL~kka~~~~ 261 (408)
T COG0593 252 ILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhcC
Confidence 9998765543
No 195
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.78 E-value=0.0039 Score=60.39 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=63.5
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
++||. ++.++++--.-.+.+.+-+.|.||+|+||||-+..+++..-. ...-+.+.-..+|+...+..+...|-.-..
T Consensus 28 dIVGN--e~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG-~~~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 28 DIVGN--EDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG-DSYKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HhhCC--HHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC-hhhhhHhhhccCccccccHHHHHHHHHHHH
Confidence 78997 677777766667778888999999999999999988887632 122244555556665555544444421111
Q ss_pred CCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc
Q 043332 220 QSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE 255 (897)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 255 (897)
. .-.+-.++.-++|||..+..
T Consensus 105 ~---------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 105 K---------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred h---------------hccCCCCceeEEEeeccchh
Confidence 1 01111355668899998764
No 196
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.78 E-value=0.0031 Score=57.92 Aligned_cols=122 Identities=18% Similarity=0.287 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCcccceeeccccccccCCc--ch
Q 043332 512 IPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLRSLLLRYCLRLRRVP--SV 588 (897)
Q Consensus 512 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp--~~ 588 (897)
++...|.+|.+|+.+.+.. .+..++...|.+++.|+.+.+.++ +..++.. +.++.+|+.+.+.. .+..++ .+
T Consensus 3 i~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 4455666777777777763 356677777777777777777664 5555433 45565677777754 333344 35
Q ss_pred hccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCccc
Q 043332 589 AKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDL 641 (897)
Q Consensus 589 ~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 641 (897)
..+.+|+.+.+..+ +..++.. +.+. +|+.+.+.. .+..++...|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66777777777554 4444433 5554 677776654 4555555555555544
No 197
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.77 E-value=0.007 Score=60.97 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=36.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
-+++.|+|.+|+|||++|.+++.... .....++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 57999999999999999999988763 2356799999876 66555443
No 198
>PRK12377 putative replication protein; Provisional
Probab=96.75 E-value=0.0014 Score=66.98 Aligned_cols=74 Identities=26% Similarity=0.302 Sum_probs=45.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
...+.|+|..|+|||+||.++++... . ....++++++. ++...|-..... .... ..+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~--~g~~v~~i~~~------~l~~~l~~~~~~----~~~~----~~~l~~l-- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-A--KGRSVIVVTVP------DVMSRLHESYDN----GQSG----EKFLQEL-- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-H--cCCCeEEEEHH------HHHHHHHHHHhc----cchH----HHHHHHh--
Confidence 46789999999999999999999873 2 23335666543 344444333221 1111 1233444
Q ss_pred cCeEEEEEcCCCc
Q 043332 242 KAKFVLILDDMWK 254 (897)
Q Consensus 242 ~~r~LlVlDdv~~ 254 (897)
.+-=||||||+..
T Consensus 162 ~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 CKVDLLVLDEIGI 174 (248)
T ss_pred cCCCEEEEcCCCC
Confidence 2345999999943
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.73 E-value=0.01 Score=56.70 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCe-eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 147 KKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++..+.|.+.+..+.+ ..+.++|..|+||+|+|..++...
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 5667777777877764 578999999999999999998875
No 200
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.0063 Score=58.39 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=31.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
++.|+|.+|+||||+++.++.... ..-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcchH
Confidence 368999999999999999999863 2445678888766543
No 201
>PRK10536 hypothetical protein; Provisional
Probab=96.69 E-value=0.0023 Score=64.64 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=37.4
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEE
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 199 (897)
.+.++ ......++.++.+. .+|.++|..|+|||+||.+++.+. -..+.|+.++-+
T Consensus 56 ~i~p~--n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI~ 110 (262)
T PRK10536 56 PILAR--NEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIVT 110 (262)
T ss_pred cccCC--CHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEEe
Confidence 34455 44556666777654 499999999999999999998864 212345544443
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.053 Score=57.65 Aligned_cols=175 Identities=10% Similarity=0.102 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCC----
Q 043332 148 KVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSL---- 222 (897)
Q Consensus 148 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---- 222 (897)
...+++...+..+. ...+-+.|+.|+||+++|..++...-...... ..++.-.....+...-..+.
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~---------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS---------EACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 34556666666665 56899999999999999999988752211000 00000011111110000000
Q ss_pred ---CCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCC-chhhccc--ccc
Q 043332 223 ---PENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRS-LGVCRFM--DCK 290 (897)
Q Consensus 223 ---~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~--~~~ 290 (897)
....-..+.++.+.+.+. .+.+-++|+|+++... ....+...+..-..++.+|++|.+ ..+..-. .+.
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 000111223333333331 2345588999987642 233333222222345666665554 4443322 344
Q ss_pred eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 291 EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 291 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
.+.+.+++.+++.+.+... +. . .+..++..++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~-~~-----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQ-GI-----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHc-CC-----c-----hHHHHHHHcCCCHHHHHHH
Confidence 4899999999999888543 11 1 1346788999999876544
No 203
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.65 E-value=0.0016 Score=59.04 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 204
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.65 E-value=0.01 Score=58.55 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=53.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-CCHHHHHHHHHHHHcCCC---CCChhHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQNEIAAALNQSL---PENEDEVRRAGRLSG 237 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 237 (897)
++||.++|+.|+||||.+.+++...... -..+..++.... ....+-++..++.++... ....+..+.+.+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999998887422 445777776432 234556777888887542 122234444444444
Q ss_pred HHhccCeEEEEEcCC
Q 043332 238 MLKAKAKFVLILDDM 252 (897)
Q Consensus 238 ~l~~~~r~LlVlDdv 252 (897)
....++.=+|++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 443333347777765
No 205
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0012 Score=66.18 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=41.4
Q ss_pred CCCCccEEEecCCCCCc---CCcccccCcccceeeccccccccCCcch-hccccCCEeeccCCcCc--ccCccccCCCCC
Q 043332 544 HMHGLKVLNLSHTDIEV---LPSSVSDLTNLRSLLLRYCLRLRRVPSV-AKLLALHYLDLEATRIE--EVPEGMEMLENL 617 (897)
Q Consensus 544 ~l~~Lr~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~~~~~lp~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L 617 (897)
..+.++.|||.+|.|+. +..-+.++++|++|+|+.|..-..+.+. ..+.+|++|-|.++.+. ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 44555566666665542 2222345566666666655332222222 24455666666665433 233345555666
Q ss_pred CEEeCCCCC
Q 043332 618 SYLYLYSLP 626 (897)
Q Consensus 618 ~~L~l~~~~ 626 (897)
+.|.++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666554
No 206
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.36 Score=52.46 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCC---------eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 147 KKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
++.++++.+++.+.+ -|=-.++|++|.|||+++.++++.. .|+. .-...+...+-.+
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~ydI-ydLeLt~v~~n~d-------- 276 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYDI-YDLELTEVKLDSD-------- 276 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCce-EEeeeccccCcHH--------
Confidence 445566666665542 2446799999999999999999986 2332 1122222111111
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccccccc--------------------cccCCC--CCCC-CcEE
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEE--------------------VGIPEP--SEEN-GCKL 274 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~--------------------~~~~~~--~~~~-gs~i 274 (897)
...|... ...+-+||+.|++...++.. +...+. +... +-||
T Consensus 277 --------------Lr~LL~~--t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERI 340 (457)
T KOG0743|consen 277 --------------LRHLLLA--TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERI 340 (457)
T ss_pred --------------HHHHHHh--CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceE
Confidence 1112111 23466888888875422110 110111 1122 2366
Q ss_pred EE-EeCCchhh----cccccce--EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhh-h
Q 043332 275 VI-TTRSLGVC----RFMDCKE--IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASC-M 346 (897)
Q Consensus 275 iv-TTR~~~v~----~~~~~~~--~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~-L 346 (897)
|| ||...+-. -+.+... +.|..=+.+.-..||.+..+.+.. ..+..+|.+...|.-+.=..++.. |
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~------h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED------HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC------cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 65 66653321 1112222 788888999999999888876531 234555555555554444444444 4
Q ss_pred cCC
Q 043332 347 RGV 349 (897)
Q Consensus 347 ~~~ 349 (897)
..+
T Consensus 415 ~~~ 417 (457)
T KOG0743|consen 415 KNK 417 (457)
T ss_pred hcc
Confidence 443
No 207
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.55 E-value=0.0027 Score=62.44 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=59.0
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE--e--CCC--CCHHH-------HHHHHHHH
Q 043332 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT--V--SQP--LDLIK-------LQNEIAAA 217 (897)
Q Consensus 151 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~--v--s~~--~~~~~-------~~~~i~~~ 217 (897)
...++.|. ...++.+.|++|.|||.||.+.+-+. ...+.|+.++++. + .+. +-+-+ ...-+...
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~ 86 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDA 86 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHH
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHH
Confidence 33444554 56799999999999999999998876 3458899888874 2 121 11111 11222222
Q ss_pred HcCCCCCChhHHHHHHHHHH---------HHhccC---eEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCchh
Q 043332 218 LNQSLPENEDEVRRAGRLSG---------MLKAKA---KFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLGV 283 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~---------~l~~~~---r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v 283 (897)
+..-... .. ...+.. ...+|+ ...||+|++.+. .++..+... .+.|||||++--..++
T Consensus 87 l~~~~~~-~~----~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 87 LEELFGK-EK----LEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQI 158 (205)
T ss_dssp HTTTS-T-TC----HHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-----
T ss_pred HHHHhCh-Hh----HHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCceee
Confidence 2221111 11 111111 111232 469999999875 355555433 3689999998765443
No 208
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.037 Score=57.74 Aligned_cols=174 Identities=18% Similarity=0.151 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhc----C---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 147 KKVVERIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 147 ~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
++.+++|.+... . +..+=|.+||++|.|||-||++|+++-. ..| +.|.. .+-+++-
T Consensus 157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~---AtF-----Irvvg---SElVqKY 225 (406)
T COG1222 157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD---ATF-----IRVVG---SELVQKY 225 (406)
T ss_pred HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC---ceE-----EEecc---HHHHHHH
Confidence 556666666543 1 2356789999999999999999999852 233 33222 1223332
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc------------c----ccccccCCCCC--CCCcEEE
Q 043332 214 IAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF------------R----LEEVGIPEPSE--ENGCKLV 275 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~------------~----~~~~~~~~~~~--~~gs~ii 275 (897)
|. +....++.+++.-..+.+.+|.+|.++... . +-++...+..+ ...-|||
T Consensus 226 iG-----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 226 IG-----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred hc-----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 21 123455666666556789999999986310 0 11222222211 3345899
Q ss_pred EEeCCchhhc----ccccce--EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh----HHHHHHHhh
Q 043332 276 ITTRSLGVCR----FMDCKE--IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP----LAIVTVASC 345 (897)
Q Consensus 276 vTTR~~~v~~----~~~~~~--~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P----lal~~~~~~ 345 (897)
..|...++.. +.+... ++++.=+.+.-.++|+-++..-......+++ .+++.|.|.- .|+.+=|++
T Consensus 295 ~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaictEAGm 370 (406)
T COG1222 295 MATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICTEAGM 370 (406)
T ss_pred EecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHHHHhH
Confidence 8887655532 122222 6776444555556676555433222233333 4666666654 344444554
Q ss_pred h
Q 043332 346 M 346 (897)
Q Consensus 346 L 346 (897)
+
T Consensus 371 ~ 371 (406)
T COG1222 371 F 371 (406)
T ss_pred H
Confidence 4
No 209
>PRK06921 hypothetical protein; Provisional
Probab=96.53 E-value=0.0055 Score=63.76 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=29.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 201 (897)
...-+.++|..|+|||.||.++++.... .....++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEH
Confidence 3567899999999999999999998632 21344667664
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.51 E-value=0.069 Score=55.68 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHH
Q 043332 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 211 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 211 (897)
.+.++++..++..+ .-|.+.|.+|+|||++|+.++... .. ....+++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 44556666666543 345689999999999999998753 11 23455555555544443
No 211
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.50 E-value=0.0009 Score=66.48 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=5.5
Q ss_pred Ccccceeecccc
Q 043332 568 LTNLRSLLLRYC 579 (897)
Q Consensus 568 l~~L~~L~L~~~ 579 (897)
|++|++|.++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 444444444444
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.46 E-value=0.023 Score=56.22 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=83.7
Q ss_pred cccchhhHH-HHHHHHHHhcCC------CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 140 TLAGEKTKK-VVERIWEDLMGD------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 140 ~~vGr~~~~-~~~~l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
++||.+..+ ...-|++.|.+. ..+-|..+|++|.|||-+|+++++... ..| +.|- ..+
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k---vp~-----l~vk-------at~ 186 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK---VPL-----LLVK-------ATE 186 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC---Cce-----EEec-------hHH
Confidence 688873222 223355677664 378899999999999999999999852 222 1111 111
Q ss_pred HHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc------c--------cccccccCCC--CCCCCcEEEE
Q 043332 213 EIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE------F--------RLEEVGIPEP--SEENGCKLVI 276 (897)
Q Consensus 213 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~------~--------~~~~~~~~~~--~~~~gs~iiv 276 (897)
-|.+.+ .+...++.++...-.+..+|++.+|.++.. + ...++...+. ..+.|...|-
T Consensus 187 liGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHV-------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 222222 234556666666655567899999987631 0 1122222222 1345655555
Q ss_pred EeCCchhhcc-cccc--e-EeccCCCHHHHHHHHHHhhh
Q 043332 277 TTRSLGVCRF-MDCK--E-IGVELLSQEEALNLFLDKVR 311 (897)
Q Consensus 277 TTR~~~v~~~-~~~~--~-~~l~~L~~~ea~~Lf~~~~~ 311 (897)
.|...+.... .... . ++..--+++|-.+++...+.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 5655444321 1111 1 45554567777777776653
No 213
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.43 E-value=0.017 Score=59.40 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=55.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc---CCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC------------CCh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP------------ENE 226 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~~~ 226 (897)
-.++.|+|.+|+|||++|.+++....... +....++|++....++..++. ++++..+.... ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 57999999999999999999986531111 113679999988777655443 33443332110 011
Q ss_pred hHHHHHHHHHHHHhcc-CeEEEEEcCCCc
Q 043332 227 DEVRRAGRLSGMLKAK-AKFVLILDDMWK 254 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~-~r~LlVlDdv~~ 254 (897)
+.......+...+.+. +.-+||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1122333444444444 667888888753
No 214
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.39 E-value=0.19 Score=54.49 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHH-HHHHHHHhhccCCCcEEEEEEeCC---CCCHHHHHHHHHHHHcC--
Q 043332 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQNEIAAALNQ-- 220 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~l~~-- 220 (897)
.+.+++|..||.+..-..|.|.|+-|+||+.|+ .++.++.. + +..+++.+ ..+-..+.+.++.++|-
T Consensus 2 ~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~----~---vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 2 KEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK----N---VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred chHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC----C---EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 456789999999888899999999999999999 77766531 1 55554432 12233444444444431
Q ss_pred ----------------------CCCCChhHHHHHHHHHH----HHh-------------------------ccCeEEEEE
Q 043332 221 ----------------------SLPENEDEVRRAGRLSG----MLK-------------------------AKAKFVLIL 249 (897)
Q Consensus 221 ----------------------~~~~~~~~~~~~~~l~~----~l~-------------------------~~~r~LlVl 249 (897)
...-......++..+.. .|+ ..+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 10001111111111110 000 012458999
Q ss_pred cCCCccc-----------cccccccCCCCCCCCcEEEEEeCCchhhc----ccccce---EeccCCCHHHHHHHHHHhhh
Q 043332 250 DDMWKEF-----------RLEEVGIPEPSEENGCKLVITTRSLGVCR----FMDCKE---IGVELLSQEEALNLFLDKVR 311 (897)
Q Consensus 250 Ddv~~~~-----------~~~~~~~~~~~~~~gs~iivTTR~~~v~~----~~~~~~---~~l~~L~~~ea~~Lf~~~~~ 311 (897)
|+.-... +|... +. ..+-.+||++|-+..... .+.... +.|...+++.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9975421 23322 21 134568999888754433 333222 88999999999999988775
Q ss_pred ccccc------------cc-----hhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCCh
Q 043332 312 ISTSQ------------IL-----NLDKEIINSVVEECAGLPLAIVTVASCMRGVDEI 352 (897)
Q Consensus 312 ~~~~~------------~~-----~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~ 352 (897)
..... .. .....-....++..||=-.-+..+++-++...++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 43110 00 1233445667888999999999999999876543
No 215
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0089 Score=65.00 Aligned_cols=93 Identities=22% Similarity=0.297 Sum_probs=61.1
Q ss_pred cccchh-hHHHHHHHHHHhcCCC---------eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHH
Q 043332 140 TLAGEK-TKKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (897)
Q Consensus 140 ~~vGr~-~~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 209 (897)
++-|-+ ...++++++++|.+.. .+=|.++|++|.|||-||++|+.+. .+ .| |...+..|+ +
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~V--PF----F~~sGSEFd--E 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GV--PF----FYASGSEFD--E 375 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CC--Ce----Eeccccchh--h
Confidence 445543 3567899999998742 4678999999999999999999985 22 11 222233332 1
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCc
Q 043332 210 LQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
++ -. --..+++.+...-+...+++|.+|.++.
T Consensus 376 m~----VG---------vGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 MF----VG---------VGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred hh----hc---------ccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11 11 1134566666666667789999999864
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.38 E-value=0.18 Score=61.69 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=33.9
Q ss_pred ccccchhhHHHHHHHHHHhcC-------CC--eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMG-------DK--VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|. +..++.+...+.. .+ ..++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQ--NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCC--HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 368887 5566666655531 11 3578899999999999999999875
No 217
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.035 Score=61.67 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=48.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+=|.++|++|.|||.||++++++.. +-++.++.. +|+..+. ....+.++++...-.+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~--------vPf~~isAp--------eivSGvS------GESEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELG--------VPFLSISAP--------EIVSGVS------GESEKKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcC--------CceEeecch--------hhhcccC------cccHHHHHHHHHHHhc
Confidence 46688999999999999999999862 223343332 2222221 2234556677766666
Q ss_pred cCeEEEEEcCCCc
Q 043332 242 KAKFVLILDDMWK 254 (897)
Q Consensus 242 ~~r~LlVlDdv~~ 254 (897)
..++++++|+++.
T Consensus 281 ~aPcivFiDeIDA 293 (802)
T KOG0733|consen 281 NAPCIVFIDEIDA 293 (802)
T ss_pred cCCeEEEeecccc
Confidence 7899999999874
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.35 E-value=0.018 Score=58.80 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=35.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 210 (897)
-.++.|+|.+|+|||++|.+++.... .....++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 57999999999999999999998763 234678999887 5555544
No 219
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.35 E-value=0.019 Score=58.65 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=36.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCcEEEEEEeCCCCCHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLDLIKLQ 211 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~ 211 (897)
..++.|+|.+|+|||++|.+++.... ... .-..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHH
Confidence 57999999999999999999987652 111 11568899987777765543
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.16 Score=54.60 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=57.7
Q ss_pred HHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCC-chhhccc--ccceEeccCCCHH
Q 043332 230 RRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRS-LGVCRFM--DCKEIGVELLSQE 300 (897)
Q Consensus 230 ~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~~--~~~~~~l~~L~~~ 300 (897)
+.++.+.+.+. .+++-++|+|+++.. .....+...+..-..++.+|++|.+ ..+.... .+..+.+.+++.+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 44445554442 244558889998764 2233333333222456655555544 4443222 3444999999999
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 301 EALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 301 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+..+.+... +. .+ ...++..++|.|..+..+
T Consensus 195 ~~~~~L~~~-~~-----~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 195 AAAAWLAAQ-GV-----AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHc-CC-----Ch-----HHHHHHHcCCCHHHHHHH
Confidence 999888654 11 11 123567789999755443
No 221
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.30 E-value=0.02 Score=64.68 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|+|||.+|+++++... ..| +-+..+. +.. .. .......+..+.+....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~---~~~---~~l~~~~------l~~--------~~--vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQ---LPL---LRLDVGK------LFG--------GI--VGESESRMRQMIRIAEA 316 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEEhHH------hcc--------cc--cChHHHHHHHHHHHHHh
Confidence 46689999999999999999999862 122 2222211 111 00 01112233444444444
Q ss_pred cCeEEEEEcCCCcccc----c----------cccccCCCCCCCCcEEEEEeCCchh-h----cccccce-EeccCCCHHH
Q 043332 242 KAKFVLILDDMWKEFR----L----------EEVGIPEPSEENGCKLVITTRSLGV-C----RFMDCKE-IGVELLSQEE 301 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~----~----------~~~~~~~~~~~~gs~iivTTR~~~v-~----~~~~~~~-~~l~~L~~~e 301 (897)
..+++|++|+++.... . ..+...+.....+--||.||...+. - +...-.. +.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 5789999999974210 0 0011111111233345556655332 1 1111222 6777778888
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 302 ALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 302 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
-.++|............. ......+++.+.|.-
T Consensus 397 R~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 888888765432110000 112345666666654
No 222
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.023 Score=65.86 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=100.4
Q ss_pred cccchh-hHHHHHHHHHHhcCCC---------eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHH
Q 043332 140 TLAGEK-TKKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (897)
Q Consensus 140 ~~vGr~-~~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 209 (897)
++.|-+ ..+++++++++|.+.+ ++=+-++|++|.|||-||++++... . +=|++++..-
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGSE---- 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGSE---- 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechHH----
Confidence 566652 2566777888887642 4668999999999999999999985 2 2345555431
Q ss_pred HHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc-----------------ccccccCCCCCCCCc
Q 043332 210 LQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR-----------------LEEVGIPEPSEENGC 272 (897)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-----------------~~~~~~~~~~~~~gs 272 (897)
..+.+... ...++..+...-+...++++.+|+++...- +..+.........+.
T Consensus 380 ----FvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 ----FVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11111110 133555666655566789999998864211 112222222222223
Q ss_pred EE--EEEeCCchhhc----ccccce--EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHH
Q 043332 273 KL--VITTRSLGVCR----FMDCKE--IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLA 338 (897)
Q Consensus 273 ~i--ivTTR~~~v~~----~~~~~~--~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 338 (897)
.| +-+|+..++.. +.+... +.++.=+.....++|..++..... ..+..++++ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHH
Confidence 23 33555544432 122222 677777778888888877654432 233455556 77777777744
No 223
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.029 Score=62.88 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=104.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
+++||. +.....|...+..+. .......|+-|+||||+|+-++....... | ...+.++.-...++|...
T Consensus 16 ~evvGQ--e~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQ--EHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEINEG 85 (515)
T ss_pred HHhccc--HHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhhhcC
Confidence 368997 667777888887665 45677889999999999999998763221 1 122233333333333322
Q ss_pred HcCCCC----CChhHHHHHHHHHHHHh----ccCeEEEEEcCCCc--cccccccccCCCCCCCCcEEEEEeCC-chhhcc
Q 043332 218 LNQSLP----ENEDEVRRAGRLSGMLK----AKAKFVLILDDMWK--EFRLEEVGIPEPSEENGCKLVITTRS-LGVCRF 286 (897)
Q Consensus 218 l~~~~~----~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~--~~~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~ 286 (897)
-..+.- ......+.++.+.+... .++.=+.|+|+|.- ...|..+..-+..-..+.+.|+.|++ ..+-.-
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 000000 01112334445554443 34455889999863 34455554333322334555555554 444321
Q ss_pred --cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH
Q 043332 287 --MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL 337 (897)
Q Consensus 287 --~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 337 (897)
..+..|.+..++.++-...+...+....- ....+....|++..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChh
Confidence 23444999999999888888777654322 1223445556666666543
No 224
>PRK06526 transposase; Provisional
Probab=96.29 E-value=0.0036 Score=64.47 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..-+.|+|++|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3568999999999999999999886
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.25 E-value=0.0077 Score=64.41 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=28.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 201 (897)
.-+.++|..|+|||.||.++++... . ....++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~--~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-D--RGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-H--CCCeEEEEEH
Confidence 6799999999999999999999873 2 2235667654
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.25 E-value=0.0067 Score=64.60 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=38.8
Q ss_pred cccchhhHHHHHHHHHHhcC------CCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 140 TLAGEKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
.++|. ++.++++++++.. ...+++.++|++|+||||||+.+++...
T Consensus 52 ~~~G~--~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGM--EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCc--HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 68997 7788888888743 2458899999999999999999999873
No 227
>PRK04132 replication factor C small subunit; Provisional
Probab=96.23 E-value=0.071 Score=63.78 Aligned_cols=152 Identities=9% Similarity=0.064 Sum_probs=89.1
Q ss_pred CCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEE
Q 043332 170 MGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLIL 249 (897)
Q Consensus 170 ~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVl 249 (897)
+.++||||+|.+++++.-. .+.-..++-+++++..+...+...| ..+....+ +...+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIREKV-KEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHHHHH-HHHHhcCC---------------cCCCCCEEEEE
Confidence 7899999999999998621 1111235667777765655444333 22211100 00123569999
Q ss_pred cCCCccc--cccccccCCCCCCCCcEEEEEeCC-chhhcc--cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHH
Q 043332 250 DDMWKEF--RLEEVGIPEPSEENGCKLVITTRS-LGVCRF--MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEI 324 (897)
Q Consensus 250 Ddv~~~~--~~~~~~~~~~~~~~gs~iivTTR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~ 324 (897)
|+++... ....+...+......+++|+++.+ ..+... ..|..+.+.+++.++-...+...+..... .-..+.
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi---~i~~e~ 713 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL---ELTEEG 713 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC---CCCHHH
Confidence 9998743 333333333322345666666554 333222 22444999999999988888766543211 112456
Q ss_pred HHHHHHHhCCChHHHHH
Q 043332 325 INSVVEECAGLPLAIVT 341 (897)
Q Consensus 325 ~~~i~~~c~G~Plal~~ 341 (897)
...|++.++|.+..+..
T Consensus 714 L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 714 LQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHcCCCHHHHHH
Confidence 78899999998855443
No 228
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.22 E-value=0.003 Score=62.81 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=50.9
Q ss_pred hhCCCCccEEEecCC--CCC-cCCcccccCcccceeecccccccc---CCcchhccccCCEeeccCCcCcccCc----cc
Q 043332 542 FVHMHGLKVLNLSHT--DIE-VLPSSVSDLTNLRSLLLRYCLRLR---RVPSVAKLLALHYLDLEATRIEEVPE----GM 611 (897)
Q Consensus 542 ~~~l~~Lr~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~~~~~~---~lp~~~~l~~L~~L~l~~~~l~~lp~----~~ 611 (897)
|..+++|++|+++.| .+. .++.....+++|++|++++|+ ++ .++.+..+.+|..|++.+|....+-. .+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 345667778888877 333 455455566888888888763 33 33346667777778877775554322 24
Q ss_pred cCCCCCCEEeCCCC
Q 043332 612 EMLENLSYLYLYSL 625 (897)
Q Consensus 612 ~~l~~L~~L~l~~~ 625 (897)
.-+++|.+|+-...
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 55566666664433
No 229
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.11 Score=58.73 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+-|..+|++|.|||++|+++++..
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~ 492 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA 492 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh
Confidence 36789999999999999999999985
No 230
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.19 E-value=0.0062 Score=58.44 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=32.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
+.|.|..|+|||++|.+++... ...++++.-.+.++.+ +.+.|.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHH
Confidence 6799999999999999987652 2356777766666653 4444444
No 231
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.17 E-value=0.026 Score=60.14 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=42.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhc---cCCCcEEEEEEeCCCCCHHHHHHHHHHHHcC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQNEIAAALNQ 220 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 220 (897)
.+++-|+|.+|+|||+|+.+++-..... ...-..++|++....++++++.+ +++.++.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 5789999999999999998877543111 11235799999998888887754 5666654
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.1 Score=61.28 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=41.6
Q ss_pred cccchhhHHHHHHHHHHhcC-------C--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 140 TLAGEKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
.++|. ++.++.+.+.+.. . ...+...+|+.|+|||.||++++... ++.=+..+-+..|+
T Consensus 492 rViGQ--d~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSE 559 (786)
T COG0542 492 RVIGQ--DEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSE 559 (786)
T ss_pred ceeCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHH
Confidence 68898 6777777776632 1 25678889999999999999999986 22224445454444
No 233
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.16 E-value=0.0099 Score=61.90 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEE
Q 043332 149 VVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVI 197 (897)
Q Consensus 149 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~ 197 (897)
+-..-+++|.++++..|.+.|.+|.|||.||-+..=..-..+..|..++
T Consensus 232 eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 232 EQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred HHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 3344567889999999999999999999988766544323345555444
No 234
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.15 E-value=0.015 Score=61.52 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=52.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++.... ......+....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 57999999999999999999887763 234567899877766543 3444443211 1112222333333
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
..+.++..-+||+|.|-.
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333345566999999853
No 235
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.10 E-value=0.013 Score=66.27 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=53.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
-+|+-++|++|+||||||..|+++. .| .++-+.+|+.-....+-..|...+.....-. ..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 5899999999999999999999974 12 3777888988877777777765553321100 02
Q ss_pred cCeEEEEEcCCCcc
Q 043332 242 KAKFVLILDDMWKE 255 (897)
Q Consensus 242 ~~r~LlVlDdv~~~ 255 (897)
+++.-||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 56778899998864
No 236
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.08 E-value=0.04 Score=56.78 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=54.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHHHcC-------CCCCChhHHH---
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAALNQ-------SLPENEDEVR--- 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~--- 230 (897)
-..++|+|..|+|||||++++++.... .+-+.++++-+++... ..++.+++...-.. ... +.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~-d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQM-NEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECC-CCCHHHHHH
Confidence 467899999999999999999998732 2235567777776543 44555555432110 111 111111
Q ss_pred ---HHHHHHHHHh-c-cCeEEEEEcCCCc
Q 043332 231 ---RAGRLSGMLK-A-KAKFVLILDDMWK 254 (897)
Q Consensus 231 ---~~~~l~~~l~-~-~~r~LlVlDdv~~ 254 (897)
.+-.+-+++. + ++.+|+++||+..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122233343 3 8899999999854
No 237
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.0011 Score=76.68 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=30.7
Q ss_pred CCCCCEEeCCCCC-CCcCCCCcc-cCCcccCeEecccCchhhhhcHHHHHh-hhcccceeEEEecc
Q 043332 614 LENLSYLYLYSLP-LKKFPTGIL-PRLRDLYKLKLSFGREALRETVEEAAR-LSNRLDTFEGHFST 676 (897)
Q Consensus 614 l~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~~L~~L~l~~~~ 676 (897)
+.+|+.|+++++. +++..-..+ ..+++|++|.+..+...++.++..+.. .+. |+.|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~-L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPS-LRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCc-ccEEeeecCc
Confidence 3556666666555 333221111 225566666654333345555544444 344 7777776553
No 238
>PRK04296 thymidine kinase; Provisional
Probab=96.07 E-value=0.0066 Score=59.88 Aligned_cols=112 Identities=8% Similarity=0.026 Sum_probs=59.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCC--ChhHHHHHHHHHHHHh
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPE--NEDEVRRAGRLSGMLK 240 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 240 (897)
.++.|+|..|.||||+|..++.+... +...++.+. + .++.......++..++..... .....+....+.. .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k-~-~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFK-P-AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEe-c-cccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h
Confidence 57889999999999999999888632 223344342 1 111111122344455432221 1111222222222 2
Q ss_pred ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCchh
Q 043332 241 AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLGV 283 (897)
Q Consensus 241 ~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v 283 (897)
.++.-+||+|.+.-- ++..++...+ ...|..||+|.++.+.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 334458999999542 2222222222 2467889999998654
No 239
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.00 E-value=0.051 Score=65.75 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=85.4
Q ss_pred cccchhhHHHHHHHHHHhcC-------------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 140 TLAGEKTKKVVERIWEDLMG-------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
++.|. ++.++++.+.+.- ...+-|.++|++|+|||+||+++++... ..| +.+..+
T Consensus 179 di~G~--~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~---~~~---i~i~~~---- 246 (733)
T TIGR01243 179 DIGGL--KEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYF---ISINGP---- 246 (733)
T ss_pred HhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeE---EEEecH----
Confidence 56776 5555555554421 1246688999999999999999999752 222 222211
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc-------------ccccccCCCC-CCCCc
Q 043332 207 LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR-------------LEEVGIPEPS-EENGC 272 (897)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-------------~~~~~~~~~~-~~~gs 272 (897)
++... . .......+..+.+........+|++|+++.... ...+...+.. ...+.
T Consensus 247 --~i~~~--------~--~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 --EIMSK--------Y--YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred --HHhcc--------c--ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11100 0 011122334444444445568999999854210 1111111111 12333
Q ss_pred EEEE-EeCCch-hhcc---ccc-ce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH
Q 043332 273 KLVI-TTRSLG-VCRF---MDC-KE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL 337 (897)
Q Consensus 273 ~iiv-TTR~~~-v~~~---~~~-~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl 337 (897)
.+++ ||.... +... .+. .. +.+...+.++-.+++......... .. ......+++.+.|.--
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l--~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL--AE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC--cc--ccCHHHHHHhCCCCCH
Confidence 4444 444322 2111 111 12 677777888888888754322111 00 1124567778877653
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.03 Score=57.74 Aligned_cols=83 Identities=25% Similarity=0.303 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHH
Q 043332 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVR 230 (897)
Q Consensus 151 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 230 (897)
..+.+++. +..-+.++|.+|+|||.||.++.++.. . .--.+.+++ ..++..++....... .
T Consensus 96 ~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~------~~el~~~Lk~~~~~~----~---- 156 (254)
T COG1484 96 ASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFIT------APDLLSKLKAAFDEG----R---- 156 (254)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEE------HHHHHHHHHHHHhcC----c----
Confidence 33444554 566789999999999999999999984 2 223355554 345555555444321 1
Q ss_pred HHHHHHHHHhccCeEEEEEcCCCc
Q 043332 231 RAGRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 231 ~~~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
...++.+.+. +-=||||||+-.
T Consensus 157 ~~~~l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 157 LEEKLLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred hHHHHHHHhh--cCCEEEEecccC
Confidence 1122333232 233999999864
No 241
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.97 E-value=0.014 Score=61.77 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=52.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCC-----CCChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSL-----PENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 236 (897)
-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++... ....+..+....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 57899999999999999999887753 234568899887766653 333343221 11112222333332
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
..+.++.--+||+|.|-.
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 333344566999999753
No 242
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.96 E-value=0.013 Score=71.10 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=35.6
Q ss_pred ccccchhhHHHHHHHHHHhc-------CC--CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM-------GD--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|. +..++.+.+.+. .. ...++.++|+.|+|||.+|++++...
T Consensus 566 ~~v~GQ--~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQ--DHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 368898 667777777653 11 24578999999999999999998876
No 243
>PRK06696 uridine kinase; Validated
Probab=95.94 E-value=0.012 Score=59.82 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhc---CCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 147 KKVVERIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 147 ~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++.+++|.+.+. .+...+|+|.|.+|+||||+|+.++...
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445566666553 3467899999999999999999999987
No 244
>PRK09354 recA recombinase A; Provisional
Probab=95.91 E-value=0.02 Score=61.15 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++.... ......+....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 57999999999999999999887763 234668899888877653 3444443211 1112222333333
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
..+.++..-+||+|.|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 333345566999999853
No 245
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.91 E-value=0.02 Score=55.76 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=28.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEE
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 199 (897)
...+|.|.|+.|+||||+|+.++.... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~---~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK---LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEE
Confidence 456899999999999999999999873 234444444
No 246
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.89 E-value=0.026 Score=68.08 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=55.9
Q ss_pred cccchhhHHHHHHHHHHhcC-------C--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 210 (897)
.++|. ++.++.+.+.+.. . ...++.++|+.|+|||+||+.++.... ...+.++.++-.....
T Consensus 455 ~v~GQ--~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~~- 525 (731)
T TIGR02639 455 KIFGQ--DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG------VHLERFDMSEYMEKHT- 525 (731)
T ss_pred ceeCc--HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc------CCeEEEeCchhhhccc-
Confidence 57786 5566666666541 1 134688999999999999999998751 2245555544222111
Q ss_pred HHHHHHHHcCCCCC-ChhHHHHHHHHHHHHhccCeEEEEEcCCCcc
Q 043332 211 QNEIAAALNQSLPE-NEDEVRRAGRLSGMLKAKAKFVLILDDMWKE 255 (897)
Q Consensus 211 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 255 (897)
+...++..... ..+. ...+.+.+.....-+++||+++..
T Consensus 526 ---~~~lig~~~gyvg~~~---~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 ---VSRLIGAPPGYVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred ---HHHHhcCCCCCcccch---hhHHHHHHHhCCCeEEEEechhhc
Confidence 11222221110 1111 112333343344569999999753
No 247
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.88 E-value=0.018 Score=70.44 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=34.9
Q ss_pred cccchhhHHHHHHHHHHhcC-------C--CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. +..++.+...+.. . ...++.++|+.|+|||++|+.++...
T Consensus 566 ~v~GQ--~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 566 RVVGQ--DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred ccCCC--hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 68887 6677777766642 1 13578899999999999999999875
No 248
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.85 E-value=0.026 Score=53.07 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=60.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe---CCCCCHHHHHHHHHHHH-----cCC--C--CCChhHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV---SQPLDLIKLQNEIAAAL-----NQS--L--PENEDEVR 230 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~~~~~~~~~~i~~~l-----~~~--~--~~~~~~~~ 230 (897)
..|-|++..|.||||+|...+-... .+-..+.++.. ....+...+++.+- .+ +.. . ........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4688899999999999998888763 22233444432 22334444444330 01 110 0 11111111
Q ss_pred HH----HHHHHHHhccCeEEEEEcCCCccc-----cccccccCCCCCCCCcEEEEEeCCch
Q 043332 231 RA----GRLSGMLKAKAKFVLILDDMWKEF-----RLEEVGIPEPSEENGCKLVITTRSLG 282 (897)
Q Consensus 231 ~~----~~l~~~l~~~~r~LlVlDdv~~~~-----~~~~~~~~~~~~~~gs~iivTTR~~~ 282 (897)
.+ ....+.+..+.-=|||||++-... ..+++...+.....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11 112233334455699999985432 22233323333345678999999843
No 249
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.83 E-value=0.055 Score=65.52 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=78.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|+|||++|+++++... ..| +.+... ++.. .. .......+..+......
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~---~~f-----i~v~~~----~l~~----~~------vGese~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG---ANF-----IAVRGP----EILS----KW------VGESEKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC---CCE-----EEEehH----HHhh----cc------cCcHHHHHHHHHHHHHh
Confidence 45588999999999999999999852 222 222211 1111 10 01112334455554445
Q ss_pred cCeEEEEEcCCCcccc--------------ccccccCCCC--CCCCcEEEEEeCCchhhc-c-c--c-cce-EeccCCCH
Q 043332 242 KAKFVLILDDMWKEFR--------------LEEVGIPEPS--EENGCKLVITTRSLGVCR-F-M--D-CKE-IGVELLSQ 299 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~--------------~~~~~~~~~~--~~~gs~iivTTR~~~v~~-~-~--~-~~~-~~l~~L~~ 299 (897)
..+.+|++|+++.... ...+...+.. ...+--||.||...+... . . + ... +.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 6679999999863210 0111111111 123344555665543321 1 1 1 222 78888888
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 300 EEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 300 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
++-.++|+............+ ...+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 888889876543221111112 345667777654
No 250
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.046 Score=59.38 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=73.5
Q ss_pred ccchhhHHHHHHHHHHhcC-CC-eeEEEEEcCCCchHHHHHHHHHHHHhhccC------------------CCcEEEEEE
Q 043332 141 LAGEKTKKVVERIWEDLMG-DK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWVT 200 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~-~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~ 200 (897)
++|. +....++..+... .+ ...+-++|+.|+||||+|..+++..-.... ...-+..+.
T Consensus 3 ~~~~--~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 3 LVPW--QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred cccc--hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 4454 5566667776653 33 345999999999999999999998732111 112334444
Q ss_pred eCCCCC---HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEE
Q 043332 201 VSQPLD---LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLV 275 (897)
Q Consensus 201 vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~ii 275 (897)
.++... ..+..+++.+....... .++.-++++|+++... .-..+..........+.+|
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 444333 22333333332221110 2456799999998642 2223332232234567788
Q ss_pred EEeCC-chhhccc--ccceEeccC
Q 043332 276 ITTRS-LGVCRFM--DCKEIGVEL 296 (897)
Q Consensus 276 vTTR~-~~v~~~~--~~~~~~l~~ 296 (897)
++|.. ..+..-. .+..+++.+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEcCChhhccchhhhcceeeecCC
Confidence 77763 3332212 222266666
No 251
>PRK06547 hypothetical protein; Provisional
Probab=95.81 E-value=0.013 Score=56.59 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 153 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 153 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+...+......+|+|.|.+|+||||+|+.++...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556678899999999999999999999874
No 252
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.76 E-value=0.028 Score=68.61 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=34.9
Q ss_pred ccccchhhHHHHHHHHHHhcC-------CC--eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMG-------DK--VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|. +..++.+...+.. .+ ..++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQ--DEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcCh--HHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 368887 6677777766641 11 3467789999999999999999875
No 253
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.75 E-value=0.086 Score=54.60 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=55.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhc---cCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC------------CCh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP------------ENE 226 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~~~ 226 (897)
..+.=|+|.+|+|||.|+.+++-....- .+.-..++|++-...++..++. +|++..+.+.. ...
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4689999999999999998887654211 1234579999998889887775 46665432110 001
Q ss_pred hHHHHHHHHHHHHhccCeEEEEEcCCCc
Q 043332 227 DEVRRAGRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
+....+..+...+.+.+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 1122233333334344556888888743
No 254
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.74 E-value=0.049 Score=55.21 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=32.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
.+++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 57899999999999999999998763 2334678887665543
No 255
>PRK09183 transposase/IS protein; Provisional
Probab=95.73 E-value=0.024 Score=58.87 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998875
No 256
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.18 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999998875
No 257
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.72 E-value=0.064 Score=54.74 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=50.5
Q ss_pred HHHHHHHHhcC--CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCCh
Q 043332 149 VVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENE 226 (897)
Q Consensus 149 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 226 (897)
.+..+.++..+ .....+.++|.+|+|||+||.++++.... ....++++++ .++...+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it~------~~l~~~l~~~~~~---~~~ 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIITV------ADIMSAMKDTFSN---SET 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEH------HHHHHHHHHHHhh---ccc
Confidence 44444444432 22357899999999999999999998732 2234566643 3444444333221 011
Q ss_pred hHHHHHHHHHHHHhccCeEEEEEcCCCcc
Q 043332 227 DEVRRAGRLSGMLKAKAKFVLILDDMWKE 255 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 255 (897)
. ...+.+.+. +.=+||+||+...
T Consensus 152 ~----~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 S----EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred c----HHHHHHHhc--cCCEEEEeCCCCC
Confidence 1 122334442 2448899999653
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.71 E-value=0.024 Score=55.04 Aligned_cols=73 Identities=30% Similarity=0.331 Sum_probs=42.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
..-+.|+|..|+|||.||.++++.... .-..+.|+. ..+++..+ ...... ... ....+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~------~~~L~~~l----~~~~~~-~~~----~~~~~~l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT------ASDLLDEL----KQSRSD-GSY----EELLKRLK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE------HHHHHHHH----HCCHCC-TTH----CHHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee------cCceeccc----cccccc-cch----hhhcCccc-
Confidence 456999999999999999999998732 223356664 33444443 222111 111 12333442
Q ss_pred cCeEEEEEcCCCc
Q 043332 242 KAKFVLILDDMWK 254 (897)
Q Consensus 242 ~~r~LlVlDdv~~ 254 (897)
+-=||||||+-.
T Consensus 108 -~~dlLilDDlG~ 119 (178)
T PF01695_consen 108 -RVDLLILDDLGY 119 (178)
T ss_dssp -TSSCEEEETCTS
T ss_pred -cccEecccccce
Confidence 233889999864
No 259
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.00051 Score=68.22 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCcchhccccCCEeeccCCcCcccCc--cccCCCCCCEEeC
Q 043332 545 MHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPE--GMEMLENLSYLYL 622 (897)
Q Consensus 545 l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l 622 (897)
+.+.+.|+.-+|.++.+. -...++.|++|.||-| .++.+..+..+++|+.|.|+.|.|..+.+ .+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445666777777776542 2346777777777775 56666667777777777777776665533 3566667777766
Q ss_pred CCCC
Q 043332 623 YSLP 626 (897)
Q Consensus 623 ~~~~ 626 (897)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 6553
No 260
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.70 E-value=0.071 Score=57.25 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=43.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhh---ccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQS 221 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 221 (897)
.+++-|+|.+|+|||+|+.+++-.... ....-..++|++....|++.++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 578889999999999999988654311 111235789999999998887654 56666543
No 261
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.1 Score=59.78 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=62.5
Q ss_pred ccccccchhhHHHHHHHHHHhcC---------CC---eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 137 TTATLAGEKTKKVVERIWEDLMG---------DK---VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~L~~---------~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
.+.++-|- ++.+.+|.+.+.- .+ .+=|.++|++|.|||-+|++|+.+.+ ..|++|-.+
T Consensus 670 ~WdDVGGL--eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP 739 (953)
T KOG0736|consen 670 SWDDVGGL--EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP 739 (953)
T ss_pred chhcccCH--HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH
Confidence 34566665 6777777776532 22 35688999999999999999999863 455666554
Q ss_pred CCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCc
Q 043332 205 LDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 205 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
+++.-- +| ..++.++++.++-++-++|+|.||.++.
T Consensus 740 ----ELLNMY---VG-------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ----ELLNMY---VG-------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ----HHHHHH---hc-------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222211 12 1234456666666567899999999874
No 262
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.022 Score=64.28 Aligned_cols=72 Identities=26% Similarity=0.253 Sum_probs=49.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC--CCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML 239 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (897)
..-|.|.|..|+|||+||+++++... ++....+.+|+++.- ...+.+++.+-..+ ...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf-----------------se~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF-----------------SEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHHH-----------------HHHH
Confidence 35688999999999999999999984 566667777876643 33444444432221 1112
Q ss_pred hccCeEEEEEcCCC
Q 043332 240 KAKAKFVLILDDMW 253 (897)
Q Consensus 240 ~~~~r~LlVlDdv~ 253 (897)
...+-+|||||++
T Consensus 492 -~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 -WYAPSIIVLDDLD 504 (952)
T ss_pred -hhCCcEEEEcchh
Confidence 3457899999986
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.044 Score=59.34 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=49.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK 240 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (897)
..++.++|+.|+||||++.+++...... .....+..++... .....+-++..++.++.......+..+. ......+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l-~~~l~~l- 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL-QLALAEL- 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH-HHHHHHh-
Confidence 4799999999999999999999876221 1123455555322 1233445555666666543222221111 1222333
Q ss_pred ccCeEEEEEcCCC
Q 043332 241 AKAKFVLILDDMW 253 (897)
Q Consensus 241 ~~~r~LlVlDdv~ 253 (897)
.+ +-+|++|..-
T Consensus 214 ~~-~DlVLIDTaG 225 (374)
T PRK14722 214 RN-KHMVLIDTIG 225 (374)
T ss_pred cC-CCEEEEcCCC
Confidence 23 3467789874
No 264
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.62 E-value=0.056 Score=58.13 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=42.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhh---ccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQ 220 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 220 (897)
..++-|+|.+|+|||+||.+++-.... ....-..++|++....++++++. +|++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 578899999999999999988765311 01122379999999998887764 56666654
No 265
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.62 E-value=0.062 Score=56.61 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=46.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK 240 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (897)
.++|+|+|++|+||||++..++.......+ -..+..|+..... ...+.+....+.++.......+... .......+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~-l~~~l~~~- 270 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKE-LRKALDRL- 270 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHH-HHHHHHHc-
Confidence 579999999999999999999987632111 1345556644321 1222333344444443322222222 23333333
Q ss_pred ccCeEEEEEcCC
Q 043332 241 AKAKFVLILDDM 252 (897)
Q Consensus 241 ~~~r~LlVlDdv 252 (897)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 22 347777753
No 266
>PHA00729 NTP-binding motif containing protein
Probab=95.60 E-value=0.017 Score=57.59 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.8
Q ss_pred HHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 152 RIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 152 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+++.+...+...|.|+|.+|+||||||..+++..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555666666789999999999999999999975
No 267
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.60 E-value=0.39 Score=48.43 Aligned_cols=210 Identities=15% Similarity=0.171 Sum_probs=113.5
Q ss_pred ccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhh---ccCCCcEEEEEEeCCC----------C--
Q 043332 141 LAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQP----------L-- 205 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~----------~-- 205 (897)
+.++ ++....+.......+.+=..++|+.|.||-|.+..+.++.-. .+-.-+...|.+-|.. +
T Consensus 15 l~~~--~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYH--EELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccH--HHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 5554 555556665555567888999999999999988777776522 1123445555533222 1
Q ss_pred ---------CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeE-EEEEcCCCcc--ccccccccCCCCCCCCcE
Q 043332 206 ---------DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKF-VLILDDMWKE--FRLEEVGIPEPSEENGCK 273 (897)
Q Consensus 206 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~-LlVlDdv~~~--~~~~~~~~~~~~~~~gs~ 273 (897)
.-+.+.++|++.+.+..+-+ ....+.| ++|+-.+++- +.-..++.-...-...+|
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 12334555555554332110 0012233 4555555431 111112111111234567
Q ss_pred EEEEeCC-chhhcccc--cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCC-
Q 043332 274 LVITTRS-LGVCRFMD--CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGV- 349 (897)
Q Consensus 274 iivTTR~-~~v~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~- 349 (897)
+|+.-.+ ..+-.-.. +-.+++..-+++|-...+++.+....-..+ ++++.+|+++++|.-.-.-.+-..++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 7653322 11211112 222899999999999999887765543222 6789999999999764333333222211
Q ss_pred ---------CChhHHHHHHHHHhhcccc
Q 043332 350 ---------DEIHEWRNALNELRGLVRS 368 (897)
Q Consensus 350 ---------~~~~~w~~~l~~l~~~~~~ 368 (897)
-..-+|+-++.++......
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~i~~ 264 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARVILK 264 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHHHHh
Confidence 1245799888877655443
No 268
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.58 E-value=0.075 Score=55.01 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH-HcCC---CC-CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA-LNQS---LP-ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~-l~~~---~~-~~~~~~~~~~~l~ 236 (897)
.+++=|+|+.|+||||+|.+++-..+ .....++|++.-..+++..+.. ++.. +..- .+ ........+..+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 57899999999999999999887753 3344899999999998876543 3333 2211 11 1112222233333
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
+...+ +--|+|+|.+-.
T Consensus 136 ~~~~~-~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAE-KIDLLVVDSVAA 152 (279)
T ss_pred HhccC-CCCEEEEecCcc
Confidence 33322 356888888743
No 269
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.57 E-value=0.087 Score=56.61 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=41.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhc---cCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
.+++-|+|.+|+|||+++.+++...... ...-..++||+....++..++. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 5789999999999999999998764210 0112379999998888877654 3455444
No 270
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.56 E-value=0.011 Score=55.26 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=26.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (897)
..||.|.|.+|+||||||+++...... ....+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~---~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA---RGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH---TTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEec
Confidence 368999999999999999999999832 223455553
No 271
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.55 E-value=0.32 Score=52.76 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=31.0
Q ss_pred HHHHHHHHhcC---CCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 149 VVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 149 ~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+...
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455555554 4578999999999999999999999874
No 272
>PTZ00035 Rad51 protein; Provisional
Probab=95.55 E-value=0.09 Score=56.72 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhh---ccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQ 220 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 220 (897)
..++.|+|.+|+|||||+.+++-.... ....-..++|++....++.+++ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 578999999999999999998765421 1112346789998877777764 344555543
No 273
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.55 E-value=0.073 Score=55.06 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=89.0
Q ss_pred cccchhhHHHHHHHHHHhc----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHH-HHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI-KLQNEI 214 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i 214 (897)
.++|- ..+...+-+++. .++..-|.|+|+.|.|||+|...+..+.+....+ ..-|......-.+ ..++.|
T Consensus 25 ~l~g~--~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGV--QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeeh--HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHH
Confidence 56775 334444444443 2344567899999999999998887774222333 3334444333222 245666
Q ss_pred HHHHcCC----CCCChhHHHHHHHHHHHHhcc-----CeEEEEEcCCCcccc-------ccccccCCCCCCCCcEEEEEe
Q 043332 215 AAALNQS----LPENEDEVRRAGRLSGMLKAK-----AKFVLILDDMWKEFR-------LEEVGIPEPSEENGCKLVITT 278 (897)
Q Consensus 215 ~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-----~r~LlVlDdv~~~~~-------~~~~~~~~~~~~~gs~iivTT 278 (897)
.+|+... ........+....+...+..+ -+++.|+|.++-... ..-+...-....+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 6665322 222223334455555555432 358888888764211 111111111123455667899
Q ss_pred CCchh-------hcccccce-EeccCCCHHHHHHHHHHhhh
Q 043332 279 RSLGV-------CRFMDCKE-IGVELLSQEEALNLFLDKVR 311 (897)
Q Consensus 279 R~~~v-------~~~~~~~~-~~l~~L~~~ea~~Lf~~~~~ 311 (897)
|-.-. -.+..-.. +-++.++-++...++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 96322 22222222 45677778888888887653
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.019 Score=52.79 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=22.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
.-|+|.|++|+||||+++.+++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999874
No 275
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.54 E-value=0.057 Score=57.69 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhh---ccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
..++.|+|.+|+|||||+.+++..... ....-..++|++....++..++ .++++.++
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 689999999999999999998764311 1112246799998887777763 34555544
No 276
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.54 E-value=0.059 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
++.++|++|+||||++..++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998763
No 277
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.058 Score=58.06 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
+.++|+++|++|+||||++..++....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999998763
No 278
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.52 E-value=0.051 Score=56.41 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE---eCCCCCHHHHHHHHHHHHcCCCCC-------ChhH
Q 043332 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT---VSQPLDLIKLQNEIAAALNQSLPE-------NEDE 228 (897)
Q Consensus 159 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~ 228 (897)
..+..-++|+|..|.|||||.+.++.... .....+++. +...... .+|+.....-... ..+.
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhccccccccccccccccc
Confidence 34467899999999999999999998763 222333331 2111111 2333222111000 0011
Q ss_pred HHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhh
Q 043332 229 VRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVC 284 (897)
Q Consensus 229 ~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~ 284 (897)
......+...+....+-++++|.+.....+..+...+ ..|..||+||....+.
T Consensus 180 ~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 180 CPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred chHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 1112233334433457799999997765555544333 2477899999876553
No 279
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.52 E-value=0.061 Score=52.63 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=59.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEE---EeCCCCCHHHHHH------HHHHHHcCCC------CCCh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV---TVSQPLDLIKLQN------EIAAALNQSL------PENE 226 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv---~vs~~~~~~~~~~------~i~~~l~~~~------~~~~ 226 (897)
-.+++|+|..|.|||||++.++.... .....+++ .+.. .+...... ++++.++... ..-.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 46899999999999999999998652 22233333 2221 12222222 1344443211 1111
Q ss_pred hHHHHHHHHHHHHhccCeEEEEEcCCCcccc---ccccccCCCCC-CC-CcEEEEEeCCchhh
Q 043332 227 DEVRRAGRLSGMLKAKAKFVLILDDMWKEFR---LEEVGIPEPSE-EN-GCKLVITTRSLGVC 284 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---~~~~~~~~~~~-~~-gs~iivTTR~~~v~ 284 (897)
.-..+.-.+.+.+.. .+-++++|+.-...+ .+.+...+... .. |..||++|.+.+..
T Consensus 100 ~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 112222234445544 466889999764322 11221111111 22 56788888876544
No 280
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.48 E-value=0.065 Score=61.01 Aligned_cols=49 Identities=33% Similarity=0.417 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcC-----CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE
Q 043332 147 KKVVERIWEDLMG-----DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (897)
Q Consensus 147 ~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (897)
.+-++++..||.. ...+++.+.|++|+||||.++.++++. .|+.+-|..
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4456677777753 235799999999999999999999986 467777864
No 281
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.46 E-value=0.087 Score=54.09 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=34.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
.+++.|.|.+|+|||++|.++..... ..-..++||+.... ..++.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeCC--HHHHHHH
Confidence 57999999999999999999876642 23466889987653 3444443
No 282
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.45 E-value=0.032 Score=66.52 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=34.6
Q ss_pred cccchhhHHHHHHHHHHhcC--------C-CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG--------D-KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. ++.++.+.+.+.. + ....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ--~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQ--DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCc--HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 57887 6667777766541 1 24578999999999999999998876
No 283
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.45 E-value=0.0023 Score=63.47 Aligned_cols=45 Identities=24% Similarity=0.232 Sum_probs=32.2
Q ss_pred chhccccCCEeeccCCcCc-ccCc----cccCCCCCCEEeCCCCCCCcCC
Q 043332 587 SVAKLLALHYLDLEATRIE-EVPE----GMEMLENLSYLYLYSLPLKKFP 631 (897)
Q Consensus 587 ~~~~l~~L~~L~l~~~~l~-~lp~----~~~~l~~L~~L~l~~~~~~~~~ 631 (897)
.+-++++|+..+|+.|.+. ..|+ .|.+-+.|.||.+++|.+..+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 4567788888888888554 3443 3667788999999888765543
No 284
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.43 E-value=0.11 Score=56.09 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=41.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc---CCCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
..++-|+|.+|+|||++|.+++-...... ..-..++||+....++..++. ++++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 57899999999999999999987642111 112479999998888877655 3445544
No 285
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.43 E-value=0.018 Score=64.68 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=39.1
Q ss_pred cccchhhHHHHHHHHHHh------cCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDL------MGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+++|. ++.+++|++.| .+..-+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGl--ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGM--EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCc--HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57887 88899999888 34456899999999999999999999986
No 286
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.41 E-value=0.013 Score=58.11 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
||+|.|.+|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999874
No 287
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.39 E-value=0.013 Score=53.69 Aligned_cols=22 Identities=59% Similarity=0.904 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 288
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.37 E-value=0.066 Score=53.06 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=29.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCC-------CcEEEEEEeCCC
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNK-------FNVVIWVTVSQP 204 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~vs~~ 204 (897)
.++.|+|.+|+||||++.+++......... -..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999999999887532222 236888877665
No 289
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.36 E-value=0.014 Score=46.64 Aligned_cols=23 Identities=35% Similarity=0.578 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.33 E-value=0.1 Score=58.10 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-CCHHHHHHHHHHHHcCCCCC---ChhHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQNEIAAALNQSLPE---NEDEVRRAGRLS 236 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 236 (897)
...+|.++|.+|+||||+|..++.... .. .+ .+.-|++... ....+.++.++.+++..... ..+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-Hc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999998873 22 22 3444443321 12234455666666543221 122223333333
Q ss_pred HHHhccCeEEEEEcCC
Q 043332 237 GMLKAKAKFVLILDDM 252 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv 252 (897)
+... . .-+||+|..
T Consensus 171 ~~~~-~-~DvVIIDTA 184 (437)
T PRK00771 171 EKFK-K-ADVIIVDTA 184 (437)
T ss_pred HHhh-c-CCEEEEECC
Confidence 3332 2 246788876
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.31 E-value=0.078 Score=54.38 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=35.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
.+++.|+|.+|+|||++|.++..... ..-..++|++..+. ..++.+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHH
Confidence 57999999999999999999976542 23457899988764 3444443
No 292
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.038 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.|.|.+|+||||+|+.+++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 293
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.31 E-value=0.056 Score=53.66 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++++|+|+.|.|||||.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 294
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.28 E-value=0.047 Score=57.96 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=57.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK 240 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (897)
..+-+.|+|..|+|||.||.++++... . .. ..+.+++++ ++..++....... . .....+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~-~g-~~v~~~~~~------~l~~~lk~~~~~~-----~----~~~~l~~l~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-K-KG-VSSTLLHFP------EFIRELKNSISDG-----S----VKEKIDAVK 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-H-cC-CCEEEEEHH------HHHHHHHHHHhcC-----c----HHHHHHHhc
Confidence 346789999999999999999999974 2 22 335566543 4555554443321 1 112233332
Q ss_pred ccCeEEEEEcCCCcc--cccc--ccccCC-CCC-CCCcEEEEEeCC
Q 043332 241 AKAKFVLILDDMWKE--FRLE--EVGIPE-PSE-ENGCKLVITTRS 280 (897)
Q Consensus 241 ~~~r~LlVlDdv~~~--~~~~--~~~~~~-~~~-~~gs~iivTTR~ 280 (897)
+-=||||||+... ..|. ++...+ ... ..+-.+|+||.-
T Consensus 217 --~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 217 --EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3449999999643 3343 232222 111 234457788773
No 295
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.28 E-value=0.017 Score=58.08 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999976
No 296
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.27 E-value=0.081 Score=53.44 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=28.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
+|+|.|..|+||||+|+.+.......... ..+..++...-+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~-~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDH-PNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCC-CcEEEEecCccc
Confidence 58999999999999999999886321011 234455555443
No 297
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.26 E-value=0.042 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|..|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998875
No 298
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.26 E-value=0.04 Score=50.41 Aligned_cols=113 Identities=19% Similarity=0.359 Sum_probs=64.4
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~ 575 (897)
.+++.+.+.. .+..++...|..|++|+.+.+..+ +..++...|.+++.|+.+.+.+ .+..++.. +..+.+|+.+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 3677777764 577888888999999999999774 7788888899998999999976 55555544 55699999999
Q ss_pred ccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCC
Q 043332 576 LRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENL 617 (897)
Q Consensus 576 L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L 617 (897)
+..+ +..++ .+.+. +|+.+.+.. .+..++.. +.+..+|
T Consensus 88 ~~~~--~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN--ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cCcc--ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 9763 55666 47776 888888765 44455443 4444444
No 299
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0013 Score=65.42 Aligned_cols=95 Identities=26% Similarity=0.248 Sum_probs=47.8
Q ss_pred CccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCcc---hhccccCCEee
Q 043332 522 ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPS---VAKLLALHYLD 598 (897)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~---~~~l~~L~~L~ 598 (897)
+.+.|++.+| .+.++. +..+|+.|++|.|+-|+|+++. .+..|++|+.|.|+.| .+.++.. +.++++|++|-
T Consensus 20 ~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCC-CccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 3444444444 333332 2345666666666666666553 3556666666666654 3333331 45556666666
Q ss_pred ccCCcC-cccCc-----cccCCCCCCEEe
Q 043332 599 LEATRI-EEVPE-----GMEMLENLSYLY 621 (897)
Q Consensus 599 l~~~~l-~~lp~-----~~~~l~~L~~L~ 621 (897)
|..|.. ..-+. .+.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 655522 11111 244556666664
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.25 E-value=0.11 Score=54.35 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=29.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeC
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 202 (897)
+.++|.++|++|+||||++..++.... . .-..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~--~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-K--QGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-h--cCCEEEEEeCC
Confidence 468999999999999999999998763 2 22346666544
No 301
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.25 E-value=0.0084 Score=57.67 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=31.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
.++.|.|.+|+||||+|..++.... . .++++.-...+ ..++.+.|....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~-~-----~~~~iat~~~~-~~e~~~ri~~h~ 50 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG-L-----QVLYIATAQPF-DDEMAARIAHHR 50 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC-C-----CcEeCcCCCCC-hHHHHHHHHHHH
Confidence 3689999999999999999987641 1 13444444433 334555554443
No 302
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.25 E-value=0.044 Score=58.14 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=24.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+.++|||++|.|||.+|++++++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 46889999999999999999999986
No 303
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.036 Score=53.96 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=67.5
Q ss_pred HHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-------CC
Q 043332 153 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-------EN 225 (897)
Q Consensus 153 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------~~ 225 (897)
++..|-+....-..|.|++|+|||||.+.++.-.+.....|-..--+-+... .+|+..+..... +.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer-------sEIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER-------SEIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc-------chhhccccCCchhhhhhhhhh
Confidence 4555555555557899999999999999999887544444532211111111 122221111000 00
Q ss_pred hhHHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhc
Q 043332 226 EDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCR 285 (897)
Q Consensus 226 ~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~ 285 (897)
.+.......+...+.+..+=++|.|.+-..++..++...+ ..|.+++.|..-..+..
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ied 257 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIED 257 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHHH
Confidence 0111122233344444557799999998876655554443 46888887776544433
No 304
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.088 Score=57.58 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=50.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhcc-CCCcEEEEEEeCCCCCHH--HHHHHHHHHHcCCCCCChhHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQPLDLI--KLQNEIAAALNQSLPENEDEVRRAGRLSG 237 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 237 (897)
..++|.++|+.|+||||.+..++....... ..-..+..+++.. +... .-++..++.++.......+.... .....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l-~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDL-KEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHH-HHHHH
Confidence 357999999999999999999998763221 1223455555443 3322 23555566565543322222222 22222
Q ss_pred HHhccCeEEEEEcCCC
Q 043332 238 MLKAKAKFVLILDDMW 253 (897)
Q Consensus 238 ~l~~~~r~LlVlDdv~ 253 (897)
.+ .+.-+|++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 22 234588888874
No 305
>PRK08233 hypothetical protein; Provisional
Probab=95.14 E-value=0.017 Score=56.67 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 306
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.12 E-value=0.068 Score=50.74 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
....+.++|+.|.||||+.+.+|...+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 346899999999999999999999864
No 307
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=1.6 Score=43.35 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+-|.++|++|.|||-||++|+++-
T Consensus 188 pprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 46778999999999999999999975
No 308
>PTZ00301 uridine kinase; Provisional
Probab=95.09 E-value=0.02 Score=57.10 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 309
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.08 E-value=0.004 Score=71.87 Aligned_cols=87 Identities=23% Similarity=0.156 Sum_probs=50.7
Q ss_pred CcccceeeccccccccCCc---chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCC---CCcccCCccc
Q 043332 568 LTNLRSLLLRYCLRLRRVP---SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFP---TGILPRLRDL 641 (897)
Q Consensus 568 l~~L~~L~L~~~~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L 641 (897)
+++|+.|.+.+|..+.... ....+++|+.|++++|.. .....+ ......+++|
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------~~~~~~~~~~~~~~~~~~L 245 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCL---------------------LITLSPLLLLLLLSICRKL 245 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccc---------------------ccccchhHhhhhhhhcCCc
Confidence 5677777777766555422 355566666666665400 000000 1123556788
Q ss_pred CeEecccCchhhhhcHHHHHh-hhcccceeEEEecc
Q 043332 642 YKLKLSFGREALRETVEEAAR-LSNRLDTFEGHFST 676 (897)
Q Consensus 642 ~~L~l~~~~~~~~~~~~~l~~-l~~~L~~L~l~~~~ 676 (897)
+.|+++.+....+..+..++. .++ |+.|.+..+.
T Consensus 246 ~~l~l~~~~~isd~~l~~l~~~c~~-L~~L~l~~c~ 280 (482)
T KOG1947|consen 246 KSLDLSGCGLVTDIGLSALASRCPN-LETLSLSNCS 280 (482)
T ss_pred CccchhhhhccCchhHHHHHhhCCC-cceEccCCCC
Confidence 888888555466677777766 456 8888865544
No 310
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.082 Score=59.29 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=46.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC--HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQNEIAAALNQSLPENEDEVRRAGRLSGML 239 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (897)
..+|+|+|.+|+||||++..++..... ......+..++... +. -.+.+......++.......+.. ......+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDt-yRigA~EQLk~ya~iLgv~v~~a~d~~-~L~~aL~~l 426 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDT-QRVGGREQLHSYGRQLGIAVHEADSAE-SLLDLLERL 426 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEeccc-ccccHHHHHHHhhcccCceeEecCcHH-HHHHHHHHh
Confidence 579999999999999999999887532 22223455555422 22 12223333333333222212211 222333333
Q ss_pred hccCeEEEEEcCCC
Q 043332 240 KAKAKFVLILDDMW 253 (897)
Q Consensus 240 ~~~~r~LlVlDdv~ 253 (897)
. ..-+||+|..-
T Consensus 427 -~-~~DLVLIDTaG 438 (559)
T PRK12727 427 -R-DYKLVLIDTAG 438 (559)
T ss_pred -c-cCCEEEecCCC
Confidence 2 24488888874
No 311
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.54 Score=46.43 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=88.4
Q ss_pred cccchhhHHHHHHHHHHhc-------------CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 140 TLAGEKTKKVVERIWEDLM-------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
.+||. .++.+++|.+.+. -.+.+-+.++|++|.|||-||++||++-. .-|+.||..
T Consensus 147 eMiGg-Ld~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~--------c~firvsgs-- 215 (404)
T KOG0728|consen 147 EMIGG-LDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD--------CTFIRVSGS-- 215 (404)
T ss_pred HHhcc-HHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc--------eEEEEechH--
Confidence 68885 3444444444332 12467789999999999999999999741 334566653
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------c--c----cccccCCCC--C
Q 043332 207 LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------R--L----EEVGIPEPS--E 268 (897)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------~--~----~~~~~~~~~--~ 268 (897)
+-+++-|.+ ....++++.-.-....+.+|..|.++... + . -++...+.. .
T Consensus 216 -elvqk~ige-----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 -ELVQKYIGE-----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred -HHHHHHhhh-----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 223333321 12234444443334567888889886421 0 0 011112221 2
Q ss_pred CCCcEEEEEeCCchhhc----cccc-ce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHH
Q 043332 269 ENGCKLVITTRSLGVCR----FMDC-KE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSV 328 (897)
Q Consensus 269 ~~gs~iivTTR~~~v~~----~~~~-~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i 328 (897)
.+.-+||..|..-++.. ..+. .. ++.++-+++.-.++++-+...-+....-+++.+|.++
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 34557887776544432 1121 22 7777777777677776544322222233444444443
No 312
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.03 E-value=0.032 Score=56.52 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.|+|++|+||||+|+.++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999876
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.11 Score=55.92 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=51.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML 239 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (897)
..+++.|+|+.|+||||++..++.... .. -..+.+|+..... ...+-++..++.++.......+..+. ....+.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL-~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAEL-EEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHH-HHHHHHH
Confidence 368999999999999999999988763 22 2346666654321 22344555555555433222233222 2223333
Q ss_pred hc-cCeEEEEEcCCCc
Q 043332 240 KA-KAKFVLILDDMWK 254 (897)
Q Consensus 240 ~~-~~r~LlVlDdv~~ 254 (897)
.. +..=+|++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 21 2345778887643
No 314
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.01 E-value=0.023 Score=57.08 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+...+|+|+|++|+||||||+.++...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999999876
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.00 E-value=0.021 Score=53.45 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998764
No 316
>PRK06217 hypothetical protein; Validated
Probab=95.00 E-value=0.042 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 317
>PRK14974 cell division protein FtsY; Provisional
Probab=95.00 E-value=0.21 Score=53.64 Aligned_cols=90 Identities=24% Similarity=0.265 Sum_probs=48.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCH--HHHHHHHHHHHcCCCCC---ChhHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL--IKLQNEIAAALNQSLPE---NEDEVRRAGRL 235 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 235 (897)
...+|.++|++|+||||++..++.... . ..+ .++.+. .+.+.. .+-++..+..++..... ..+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-K-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 468999999999999999999988763 2 223 344443 233322 23345566666543211 11222222222
Q ss_pred HHHHhccCeEEEEEcCCCc
Q 043332 236 SGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 236 ~~~l~~~~r~LlVlDdv~~ 254 (897)
.+.......-+|++|-...
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222122223888898743
No 318
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.059 Score=49.69 Aligned_cols=44 Identities=32% Similarity=0.400 Sum_probs=32.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQS 221 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 221 (897)
+|.|-|.+|+||||+|+.++++.. - .| + +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l--~~-------v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-L--KL-------V----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-C--ce-------e----eccHHHHHHHHHcCCC
Confidence 689999999999999999999872 1 11 1 2225677788777654
No 319
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.066 Score=53.07 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=45.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|.|||-+|++|+|+- ...| +.|- ..+-+++-+. .....++++.+.-..
T Consensus 211 pkgvllygppgtgktl~aravanrt---dacf-----irvi---gselvqkyvg-----------egarmvrelf~mart 268 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANRT---DACF-----IRVI---GSELVQKYVG-----------EGARMVRELFEMART 268 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhccc---CceE-----Eeeh---hHHHHHHHhh-----------hhHHHHHHHHHHhcc
Confidence 5678899999999999999999974 1223 2211 1122222221 123455666666656
Q ss_pred cCeEEEEEcCCC
Q 043332 242 KAKFVLILDDMW 253 (897)
Q Consensus 242 ~~r~LlVlDdv~ 253 (897)
+|-++|.||.++
T Consensus 269 kkaciiffdeid 280 (435)
T KOG0729|consen 269 KKACIIFFDEID 280 (435)
T ss_pred cceEEEEeeccc
Confidence 788999999885
No 320
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.96 E-value=0.15 Score=45.47 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=32.9
Q ss_pred cccchhh--HHHHHHHHHHhcC---CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKT--KKVVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~--~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|... +..+..|...+.+ ++.-|++..|..|+|||-+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 6788732 2233334444443 346799999999999999999999884
No 321
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.93 E-value=0.073 Score=51.24 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|..|.|||||++.++...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999875
No 322
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.93 E-value=0.049 Score=60.99 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=49.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEE-EEeCCCCC-HHHHHHHHHHHHc-CCCCCChh----HHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW-VTVSQPLD-LIKLQNEIAAALN-QSLPENED----EVRRAGR 234 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~~-~~~~~~~i~~~l~-~~~~~~~~----~~~~~~~ 234 (897)
-....|+|.+|+|||||++.|++.... .+-++.++ +-|.+... +.++...+-..+- ........ ....+..
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999997632 23344433 34555432 3333333311111 11111111 1112222
Q ss_pred HHHHH-hccCeEEEEEcCCCc
Q 043332 235 LSGML-KAKAKFVLILDDMWK 254 (897)
Q Consensus 235 l~~~l-~~~~r~LlVlDdv~~ 254 (897)
+-+++ ..++.+||++|++..
T Consensus 494 ~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchH
Confidence 22333 268899999999854
No 323
>PRK07667 uridine kinase; Provisional
Probab=94.91 E-value=0.03 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+..+|+|-|.+|+||||+|+.+....
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999986
No 324
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.054 Score=57.75 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=57.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCC-hhHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPEN-EDEVRRAGRLSGMLK 240 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 240 (897)
-.+|.|-|-+|+|||||.-+++.+.... - .+.||+-.+.....++ -++.++.....- --.....+.+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~-~vLYVsGEES~~Qikl---RA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR---G-KVLYVSGEESLQQIKL---RADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc---C-cEEEEeCCcCHHHHHH---HHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4799999999999999999999998422 2 6888886665433333 244455322110 112233445566666
Q ss_pred ccCeEEEEEcCCCc
Q 043332 241 AKAKFVLILDDMWK 254 (897)
Q Consensus 241 ~~~r~LlVlDdv~~ 254 (897)
+.+.-++|+|-+..
T Consensus 166 ~~~p~lvVIDSIQT 179 (456)
T COG1066 166 QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCCCEEEEeccce
Confidence 67889999999865
No 325
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.89 E-value=0.11 Score=54.01 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=30.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
.+++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 57899999999999999999877642 2245688888764
No 326
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.87 E-value=0.15 Score=48.65 Aligned_cols=117 Identities=19% Similarity=0.105 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEE---EEEeCCCCCHHHHHHHHHHH---HcCC--C--CCChhHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVI---WVTVSQPLDLIKLQNEIAAA---LNQS--L--PENEDEVRR 231 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~---wv~vs~~~~~~~~~~~i~~~---l~~~--~--~~~~~~~~~ 231 (897)
...|-|++..|.||||.|..++-+.. .+-..+. |+.-.........+....-. .+.. . .+.......
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~---~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL---GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 36788888899999999999888763 2222232 33333233444444332000 0111 0 111111112
Q ss_pred HH----HHHHHHhccCeEEEEEcCCCccc-----cccccccCCCCCCCCcEEEEEeCCc
Q 043332 232 AG----RLSGMLKAKAKFVLILDDMWKEF-----RLEEVGIPEPSEENGCKLVITTRSL 281 (897)
Q Consensus 232 ~~----~l~~~l~~~~r~LlVlDdv~~~~-----~~~~~~~~~~~~~~gs~iivTTR~~ 281 (897)
+. ...+.+..+.-=|||||.+-... ..+++...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22 22333444556699999985432 2223332333334567899999975
No 327
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.86 E-value=0.13 Score=52.30 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=32.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEI 214 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 214 (897)
..++.|.|..|+||||+|.+++..... .+ ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g--~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-NG--YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-CC--CcEEEEeCCC--CHHHHHHHH
Confidence 469999999999999998777665421 12 4467777433 345555554
No 328
>PRK06762 hypothetical protein; Provisional
Probab=94.86 E-value=0.025 Score=54.58 Aligned_cols=25 Identities=48% Similarity=0.629 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|+|++|+||||+|+.++...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999875
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.86 E-value=0.064 Score=58.54 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=50.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCCh-hHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENE-DEVRRAGRLSGMLK 240 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 240 (897)
..++.|.|.+|+|||||+.+++..... ....++|++..+.. ..+ ..-+..++.....-. ........+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs~--~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEESP--EQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcCH--HHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 478999999999999999999987632 23468888765432 222 222344443221100 00011233334443
Q ss_pred ccCeEEEEEcCCCc
Q 043332 241 AKAKFVLILDDMWK 254 (897)
Q Consensus 241 ~~~r~LlVlDdv~~ 254 (897)
..+.-+||+|.+..
T Consensus 156 ~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ELKPDLVIIDSIQT 169 (372)
T ss_pred hcCCcEEEEcchHH
Confidence 44566888888754
No 330
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.028 Score=55.31 Aligned_cols=26 Identities=50% Similarity=0.723 Sum_probs=24.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+.+|||-|.+|+||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999987
No 331
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.85 E-value=0.28 Score=48.47 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=34.7
Q ss_pred ccccccchhhHHHHHHHH----HHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 137 TTATLAGEKTKKVVERIW----EDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~----~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
.-..++|.+ ...+.++ .++.+..-.-|.+||.-|+|||+|++++.+.+.
T Consensus 58 ~L~~l~Gvd--~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 58 DLADLVGVD--RQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred CHHHHhCch--HHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 334788863 3333333 344444456688999999999999999999984
No 332
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.094 Score=57.27 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 333
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.83 E-value=1.4 Score=50.58 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=110.8
Q ss_pred ccchhhHHHHHHHHHHh----cC-CCeeEEEEEcCCCchHHHHHHHHHHHHhhc-----cCCCcEEEEEEeCCCCCHHHH
Q 043332 141 LAGEKTKKVVERIWEDL----MG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKE-----TNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 141 ~vGr~~~~~~~~l~~~L----~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~wv~vs~~~~~~~~ 210 (897)
+-+| +.+..+|-.++ .. ...+.+-|.|.+|+|||..+..|.+..... -..|+. +.|..-.-..+.++
T Consensus 398 LpcR--e~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~ 474 (767)
T KOG1514|consen 398 LPCR--ENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREI 474 (767)
T ss_pred ccch--hHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHH
Confidence 4456 55555555544 23 234589999999999999999999965321 123432 33444444568889
Q ss_pred HHHHHHHHcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc-----ccccccccCCCCCCCCcEEEEEeC-C
Q 043332 211 QNEIAAALNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE-----FRLEEVGIPEPSEENGCKLVITTR-S 280 (897)
Q Consensus 211 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~-----~~~~~~~~~~~~~~~gs~iivTTR-~ 280 (897)
...|..++..... ........+-.++. ..+.++|++|+++.- +.+..+. ..+ ..++||++|-+= +
T Consensus 475 Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~f-dWp-t~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIF-DWP-TLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHh-cCC-cCCCCceEEEEecc
Confidence 9999988875432 12222333333332 235688889987532 1111111 111 245677665432 1
Q ss_pred ----------chhhcccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhh
Q 043332 281 ----------LGVCRFMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASC 345 (897)
Q Consensus 281 ----------~~v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~ 345 (897)
..++..++-..+..+|.+.++-.++...+..+...-.....+=+|+.|+...|..-.|+.+.-++
T Consensus 550 TmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 23334445555788888888888877665443321122333445666666666666666555444
No 334
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.82 E-value=0.07 Score=49.62 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=31.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
|.++|.+|+|||+||+.+++... ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEecccccccccee
Confidence 57899999999999999999861 1244467788777776654
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.82 E-value=0.024 Score=55.91 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999765
No 336
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.80 E-value=0.11 Score=51.21 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=28.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
++.|.|.+|+|||++|.+++.... ..-..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC
Confidence 367999999999999999988753 22345788876553
No 337
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.79 E-value=0.032 Score=57.97 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
+.|.|+|.+|+||||+|+++.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 338
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.79 E-value=0.11 Score=57.99 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=46.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK 240 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (897)
.+++.++|++|+||||++..++...... .....+..|+..... ...+-+....+.++.......+...... ....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~-~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAK-ALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHH-HHHHh-
Confidence 3689999999999999999988876211 223456666654321 1112233334444433322222222222 22222
Q ss_pred ccCeEEEEEcCC
Q 043332 241 AKAKFVLILDDM 252 (897)
Q Consensus 241 ~~~r~LlVlDdv 252 (897)
. ..=+||+|..
T Consensus 298 ~-~~DlVlIDt~ 308 (424)
T PRK05703 298 R-DCDVILIDTA 308 (424)
T ss_pred C-CCCEEEEeCC
Confidence 2 2457888866
No 339
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.78 E-value=0.25 Score=53.21 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCC----CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-CCHHHHHHHHHHHHcCC
Q 043332 147 KKVVERIWEDLMGD----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQNEIAAALNQS 221 (897)
Q Consensus 147 ~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 221 (897)
.+....+..++.++ +.++|.+||+.|+||||-...++..+... ..=..+..++...- -...+-++.-++-++..
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 34445555565554 47999999999999997555555554211 22344666665432 12233445556666655
Q ss_pred CCC
Q 043332 222 LPE 224 (897)
Q Consensus 222 ~~~ 224 (897)
...
T Consensus 263 ~~v 265 (407)
T COG1419 263 LEV 265 (407)
T ss_pred eEE
Confidence 443
No 340
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.082 Score=58.89 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
..=|.+||++|.|||-||++|+|+. ...| ++|-.. +++.... ......++.+.++-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV----------GESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV----------GESERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh----------hhHHHHHHHHHHHhhc
Confidence 4558899999999999999999985 2344 444443 2222211 1123345556666556
Q ss_pred cCeEEEEEcCCCcc-------cc------ccccccCCCC--CCCCcEEEEEeCCchhhc-c---cccc-e-EeccCCCHH
Q 043332 242 KAKFVLILDDMWKE-------FR------LEEVGIPEPS--EENGCKLVITTRSLGVCR-F---MDCK-E-IGVELLSQE 300 (897)
Q Consensus 242 ~~r~LlVlDdv~~~-------~~------~~~~~~~~~~--~~~gs~iivTTR~~~v~~-~---~~~~-~-~~l~~L~~~ 300 (897)
..+++|.||.++.. .. ...+...+.. ...|.-||-.|...++.. . .+.- . .-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 78999999998642 11 1122222221 234556666665544421 1 1111 1 455666678
Q ss_pred HHHHHHHHhhhccc--cccchhhHHHHHHHHHHhCCCh
Q 043332 301 EALNLFLDKVRIST--SQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 301 ea~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~G~P 336 (897)
|-.++++....... .....++.++|+. .+|.|.-
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888887765321 1223445555442 2555554
No 341
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.77 E-value=0.069 Score=58.03 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=45.0
Q ss_pred ccccchhhHHHHHHHHHHhcCC--------------CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe-CC
Q 043332 139 ATLAGEKTKKVVERIWEDLMGD--------------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV-SQ 203 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~ 203 (897)
..++|+ ++.++.+...+... ..+-|.++|++|+|||++|+.++.......-+.+...+... ..
T Consensus 12 ~~IiGQ--~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQ--DNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCH--HHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcc
Confidence 357887 55555554443321 14678999999999999999999986311112222222222 12
Q ss_pred CCCHHHHHHHHHHHH
Q 043332 204 PLDLIKLQNEIAAAL 218 (897)
Q Consensus 204 ~~~~~~~~~~i~~~l 218 (897)
..+.+.+.+.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666555443
No 342
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.76 E-value=0.064 Score=50.21 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4689999999999999999998875
No 343
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.75 E-value=0.11 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
..+++|+|+.|.|||||.+.+..-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999884
No 344
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.75 E-value=0.011 Score=35.08 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=12.7
Q ss_pred CccEEEecCCCCCcCCccccc
Q 043332 547 GLKVLNLSHTDIEVLPSSVSD 567 (897)
Q Consensus 547 ~Lr~L~L~~~~i~~lp~~i~~ 567 (897)
+|++|||++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 345
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.72 E-value=0.11 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999986
No 346
>PRK03839 putative kinase; Provisional
Probab=94.72 E-value=0.026 Score=55.20 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.|+|++|+||||+|+++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 347
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.013 Score=34.64 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=10.4
Q ss_pred CCEeeccCCcCcccCccccC
Q 043332 594 LHYLDLEATRIEEVPEGMEM 613 (897)
Q Consensus 594 L~~L~l~~~~l~~lp~~~~~ 613 (897)
|++|++++|+++.+|.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45555555555555555443
No 348
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.2 Score=50.86 Aligned_cols=92 Identities=18% Similarity=0.310 Sum_probs=57.4
Q ss_pred cccccchhhHHHHHHHHHHhc----------CC--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLM----------GD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
.+++-|- +...+.|.+... +. ..+-|.++|++|.||+-||++|+.... . -|++||..
T Consensus 132 WsDVAGL--E~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn---S-----TFFSvSSS- 200 (439)
T KOG0739|consen 132 WSDVAGL--EGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN---S-----TFFSVSSS- 200 (439)
T ss_pred hhhhccc--hhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC---C-----ceEEeehH-
Confidence 3455665 555565655432 22 257899999999999999999999752 2 22455443
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMW 253 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~ 253 (897)
++.... +| .....+..+...-.+.++-+|.+|.|+
T Consensus 201 ---DLvSKW---mG-------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKW---MG-------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHH---hc-------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 222222 11 123445555555556789999999986
No 349
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.66 E-value=0.088 Score=58.15 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc-----CCCCCChhHHHH-----
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALN-----QSLPENEDEVRR----- 231 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~----- 231 (897)
-..++|+|..|+|||||++.++... .....+++..-.+..++.++....+.... .-...+.....+
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 4679999999999999999887653 12234455443344455554443333221 111111211111
Q ss_pred -HHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 232 -AGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 232 -~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
+..+-+++. +++.+|+++||+..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 111223332 57899999999854
No 350
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.66 E-value=1.7 Score=47.15 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCH--HHHHHHHHHHHcCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL--IKLQNEIAAALNQSL 222 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~ 222 (897)
..||-.+|.-|.||||.|..+++.... ....+-+...+.+.+ .+-++.++.+++..+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk----~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK----KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH----cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 678999999999999999999998843 222333333343433 345677888876543
No 351
>PRK04328 hypothetical protein; Provisional
Probab=94.65 E-value=0.12 Score=53.48 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=31.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
.-+++.|.|.+|+|||+||.++..... ..-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC
Confidence 357899999999999999999877642 23456888887664
No 352
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.65 E-value=0.11 Score=54.93 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=48.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCC-----ChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPE-----NEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 236 (897)
.+++-|+|..|+||||||..+...... .-..++|++....++.. .+++++.+... .....+......
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 479999999999999999998887632 24568999988877654 33344432211 111222222222
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
..+..+.--++|+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 223345556889998854
No 353
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.64 E-value=0.15 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...-+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999887665
No 354
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.099 Score=50.73 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998864
No 355
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.039 Score=64.51 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=87.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCC----CcEEEEEEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
.++|| ++++.++++.|....-.--.++|.+|+|||++|.-++.... ..+- -+..++. .|+..++
T Consensus 171 PvIGR--d~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv-~g~VP~~L~~~~i~s-----LD~g~Lv---- 238 (786)
T COG0542 171 PVIGR--DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV-NGDVPESLKDKRIYS-----LDLGSLV---- 238 (786)
T ss_pred CCcCh--HHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh-cCCCCHHHcCCEEEE-----ecHHHHh----
Confidence 68999 88999999999754333345789999999999988888762 1110 0111111 0111111
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------cccccccCCCCCCCCc-EEE-EEeCCch-
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------RLEEVGIPEPSEENGC-KLV-ITTRSLG- 282 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------~~~~~~~~~~~~~~gs-~ii-vTTR~~~- 282 (897)
....-..+..++...+.+.+.+..+.+|++|.+.... +...+..|- ...|. +.| .||=++.
T Consensus 239 ----AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa--LARGeL~~IGATT~~EYR 312 (786)
T COG0542 239 ----AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA--LARGELRCIGATTLDEYR 312 (786)
T ss_pred ----ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH--HhcCCeEEEEeccHHHHH
Confidence 1112234566777777787776668999999986421 111222221 23343 444 4554321
Q ss_pred ------hhcccccceEeccCCCHHHHHHHHHHh
Q 043332 283 ------VCRFMDCKEIGVELLSQEEALNLFLDK 309 (897)
Q Consensus 283 ------v~~~~~~~~~~l~~L~~~ea~~Lf~~~ 309 (897)
-|-...-+.+.+..-+.+++..+++-.
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 111112223888888999999888643
No 356
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.61 E-value=0.22 Score=50.77 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=25.0
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
....+|+|.|+.|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999998863
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=94.57 E-value=0.13 Score=57.00 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...+|.++|.+|+||||.|..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999888763
No 358
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.55 E-value=1.1 Score=47.35 Aligned_cols=166 Identities=14% Similarity=0.058 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhh-------ccCCCcEEEEEEe-CCCCCHHHHHHHHHHHHcC
Q 043332 150 VERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQK-------ETNKFNVVIWVTV-SQPLDLIKLQNEIAAALNQ 220 (897)
Q Consensus 150 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~~ 220 (897)
++.+.+.+..+. ..+.-++|..|.||+++|+.+.+..-. ...+-+-+.++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 444555665554 567789999999999999999887511 1112212333321 1222222222 22222211
Q ss_pred CCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc--ccccccCCCCCCCCcEEEEEeC-Cchhhccc--ccceEecc
Q 043332 221 SLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR--LEEVGIPEPSEENGCKLVITTR-SLGVCRFM--DCKEIGVE 295 (897)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~--~~~~~~~~~~~~~gs~iivTTR-~~~v~~~~--~~~~~~l~ 295 (897)
.. ..++.+-++|+|++..... ...+...+.....++.+|++|. ...+.... .+..+++.
T Consensus 84 ~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 84 SS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred CC----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 10 0124566888999865422 2333333332245666666554 34443322 24449999
Q ss_pred CCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 296 LLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 296 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
++++++..+.+... +. + ++.+..++...+|.-.|+..
T Consensus 148 ~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 148 EPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCCHHHHHHH
Confidence 99999998777653 11 1 23455566666663345444
No 359
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.52 E-value=0.13 Score=56.67 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...+|.++|..|+||||+|..++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999988763
No 360
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.52 E-value=0.039 Score=55.47 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999854
No 361
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.50 E-value=0.074 Score=52.31 Aligned_cols=43 Identities=35% Similarity=0.490 Sum_probs=30.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 208 (897)
.|+|+|-||+||||+|..++.....+ +.| .+.=|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~-~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK-GGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc-CCc-eEEEEeCCCCCChH
Confidence 68999999999999999977776322 223 34556666666543
No 362
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.12 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.-.+++|+|..|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999999875
No 363
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.45 E-value=0.029 Score=49.37 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 043332 165 IGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
|-|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999988874
No 364
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.42 E-value=0.048 Score=54.22 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=54.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHH-HHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI-KLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+|.|+|+.|+||||+++.+..... ......+++- .++.... .-...+..+-. . ..+.......+...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~--v--g~~~~~~~~~i~~aLr- 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTI-EDPIEFVHESKRSLINQRE--V--GLDTLSFENALKAALR- 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEE-cCCccccccCccceeeecc--c--CCCccCHHHHHHHHhc-
Confidence 4789999999999999999888762 2223333322 1111000 00000111100 0 0011112223334443
Q ss_pred cCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhh
Q 043332 242 KAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVC 284 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~ 284 (897)
...=.+++|++.+.+.+....... ..|..++.|+-..++.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 345589999998765444322221 2455677777665543
No 365
>PRK00625 shikimate kinase; Provisional
Probab=94.41 E-value=0.032 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.428 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.++|++|+||||+++.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 366
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.40 E-value=0.16 Score=51.58 Aligned_cols=126 Identities=15% Similarity=0.109 Sum_probs=67.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-----CCCHHHHHHHHHHHHcCCC------CCChhHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-----PLDLIKLQNEIAAALNQSL------PENEDEV 229 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~ 229 (897)
+..+++|||..|.||||+++.+..=.. .... .+++.-.+ .....+-..+++..++... +..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE---PTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC---CCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 357899999999999999999988652 2222 33332111 1123334555666655321 1111112
Q ss_pred HHHHHHHHHHhccCeEEEEEcCCCccccc------cccccCCCCCCCCcEEEEEeCCchhhcccccce
Q 043332 230 RRAGRLSGMLKAKAKFVLILDDMWKEFRL------EEVGIPEPSEENGCKLVITTRSLGVCRFMDCKE 291 (897)
Q Consensus 230 ~~~~~l~~~l~~~~r~LlVlDdv~~~~~~------~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~~~ 291 (897)
++.+..+.+.+.-+.-++|.|..-...+. -.+...+. ...|-..++.|-+-.+++.+....
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdri 180 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDRI 180 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcccE
Confidence 22222222222456789999987554221 11111111 134566888888888877665443
No 367
>PRK04040 adenylate kinase; Provisional
Probab=94.35 E-value=0.038 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999986
No 368
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.32 E-value=0.03 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 369
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.29 E-value=0.12 Score=61.14 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=66.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhcc
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAK 242 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (897)
+-|.++|++|.|||++|+.+++... ..| +.++.++ +.. +. .+ .....+..+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~---~~f---~~is~~~------~~~-~~--~g-------~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAK---VPF---FTISGSD------FVE-MF--VG-------VGASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC---CCE---EEEehHH------hHH-hh--hc-------ccHHHHHHHHHHHHhc
Confidence 4489999999999999999998752 222 2222221 111 00 00 0111223333333345
Q ss_pred CeEEEEEcCCCcccc----------------ccccccCCCC--CCCCcEEEEEeCCchhhc----ccc-cce-EeccCCC
Q 043332 243 AKFVLILDDMWKEFR----------------LEEVGIPEPS--EENGCKLVITTRSLGVCR----FMD-CKE-IGVELLS 298 (897)
Q Consensus 243 ~r~LlVlDdv~~~~~----------------~~~~~~~~~~--~~~gs~iivTTR~~~v~~----~~~-~~~-~~l~~L~ 298 (897)
.+++|++|+++.... +..+...+.. ...+.-||.||...+... ..+ ... +.+..-+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 678999999865310 1111111111 123444555776544321 111 122 7777778
Q ss_pred HHHHHHHHHHhhhc
Q 043332 299 QEEALNLFLDKVRI 312 (897)
Q Consensus 299 ~~ea~~Lf~~~~~~ 312 (897)
.++-.+++......
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 78888887766543
No 370
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.27 E-value=0.081 Score=49.04 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=28.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
++|.|+|..|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 5899999999999999999999974 23455555555544
No 371
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.27 E-value=0.035 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
|.|+|.+|+||||+|++++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 5789999999999999999986
No 372
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.25 E-value=0.16 Score=50.72 Aligned_cols=87 Identities=23% Similarity=0.471 Sum_probs=51.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHHHHH--Hc-----CCCCCChhHHHH--
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEIAAA--LN-----QSLPENEDEVRR-- 231 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~--l~-----~~~~~~~~~~~~-- 231 (897)
-..++|+|..|+|||+|+..+.+.. .-+.++++.+++.. ...++.+++... +. .... .+....+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~-~~~~~~r~~ 88 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS-DEPPAARYR 88 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET-TS-HHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc-hhhHHHHhh
Confidence 3578999999999999999999985 23445888887653 344555555332 00 0111 1111111
Q ss_pred ----HHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 232 ----AGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 232 ----~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
.-.+-+++. +++++|+++||+..
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhHH
Confidence 111122222 58999999999843
No 373
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.23 E-value=0.031 Score=55.68 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 374
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.20 E-value=0.23 Score=55.37 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=56.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHHHcCC------CCCChhHHH---
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAALNQS------LPENEDEVR--- 230 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~--- 230 (897)
.-..++|+|..|+|||||+.++++... +.+-+.++++-+++... ..++..++...-... ...+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 346799999999999999999998863 23567888887776543 445555554321100 011111111
Q ss_pred ---HHHHHHHHHh-c-cCeEEEEEcCCCc
Q 043332 231 ---RAGRLSGMLK-A-KAKFVLILDDMWK 254 (897)
Q Consensus 231 ---~~~~l~~~l~-~-~~r~LlVlDdv~~ 254 (897)
.+..+-+++. + ++++|+++|++..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1222333443 3 7899999999954
No 375
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.19 E-value=0.31 Score=50.19 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=55.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhh-ccCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCC------CCCChhHHH---
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQK-ETNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQS------LPENEDEVR--- 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~--- 230 (897)
-..++|+|-.|+|||+|+..++++... .+++-+.++++-+++.. ...++..++...=... ....+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 456899999999999999999887521 12335778888887754 3455555554431110 001111111
Q ss_pred ---HHHHHHHHHh-c-cCeEEEEEcCCCc
Q 043332 231 ---RAGRLSGMLK-A-KAKFVLILDDMWK 254 (897)
Q Consensus 231 ---~~~~l~~~l~-~-~~r~LlVlDdv~~ 254 (897)
....+-+++. + ++++|+++||+..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1122334443 3 6899999999865
No 376
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.14 E-value=0.25 Score=54.85 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...++.++|.+|+||||.|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998875
No 377
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.14 E-value=0.035 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 378
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.13 E-value=0.16 Score=60.17 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=55.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCC-----ChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPE-----NEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 236 (897)
.+++-|+|.+|+||||||.+++.... ..-..++|++....++.. .+++++.+... .....+....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 57899999999999999988776542 233568999887777643 56666654221 112223333333
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
..+.+++--|||+|.+..
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 334445667999999753
No 379
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.11 E-value=0.1 Score=56.87 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=46.6
Q ss_pred ccccchhhHHHHHHHHHHhcC---------C-----CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe-CC
Q 043332 139 ATLAGEKTKKVVERIWEDLMG---------D-----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV-SQ 203 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v-s~ 203 (897)
..++|. ++.++.+..++.. . ..+-|.++|+.|+|||++|+.++.....-.-+++...|... ..
T Consensus 15 ~~IiGQ--e~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQ--DDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCH--HHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcc
Confidence 358887 5566666555522 0 13678999999999999999999986322222333322221 12
Q ss_pred CCCHHHHHHHHHHHH
Q 043332 204 PLDLIKLQNEIAAAL 218 (897)
Q Consensus 204 ~~~~~~~~~~i~~~l 218 (897)
..+.+.+.+.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235556666665444
No 380
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.10 E-value=0.4 Score=50.45 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=37.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++.|.|.+|+||||++.+++.... ..+-..++|++.... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 35888999999999999999988753 222456889887663 34555555443
No 381
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.05 E-value=0.063 Score=54.77 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=30.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
.+++.|.|.+|+|||++|.++....... .-..++||+..+..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP 60 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH
Confidence 4799999999999999999977654221 13458888876653
No 382
>PF13245 AAA_19: Part of AAA domain
Probab=94.03 E-value=0.13 Score=41.76 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=18.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+-+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999995554444443
No 383
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.03 E-value=0.23 Score=55.75 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=36.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC--HHHHHHHHHHHHcCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQNEIAAALNQS 221 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 221 (897)
..|++++|+.|+||||++..++.......+. ..+..+... .+. ..+-++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~D-t~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTD-SYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCC-ccchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999999876322221 235555443 332 233445555555543
No 384
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.02 E-value=0.21 Score=55.05 Aligned_cols=88 Identities=15% Similarity=0.328 Sum_probs=51.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHHHcCC------CCCChhHHHH---
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAALNQS------LPENEDEVRR--- 231 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~~--- 231 (897)
...++|+|..|+|||||++.++... ..+.++.+-+++... ..++..+++..-+.. ...+.....+
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 4679999999999999999998753 235666676766543 344555543321110 0011111111
Q ss_pred ---HHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 232 ---AGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 232 ---~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
+..+-+++. +++++|+++||+..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 111223332 57899999999854
No 385
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.01 E-value=0.098 Score=62.86 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=85.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH-hhccCCCcEEEEEEeCCC--CC-HHHHH------HHHHHHHcCCCCCChhHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL-QKETNKFNVVIWVTVSQP--LD-LIKLQ------NEIAAALNQSLPENEDEVR 230 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~~f~~~~wv~vs~~--~~-~~~~~------~~i~~~l~~~~~~~~~~~~ 230 (897)
+.+++.|+|+.|.||||+.+.+.... ....+. +|.+... .. ...+. ..+...+. .-.....
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-----~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LS----tfS~~m~ 391 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-----PIPANEHSEIPYFEEIFADIGDEQSIEQNLS----TFSGHMK 391 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-----CccCCccccccchhheeeecChHhHHhhhhh----HHHHHHH
Confidence 35789999999999999999997762 111111 1111110 00 00000 11111110 0011111
Q ss_pred HHHHHHHHHhccCeEEEEEcCCCcccc---cccc----ccCCCCCCCCcEEEEEeCCchhhcccccce----EeccCCCH
Q 043332 231 RAGRLSGMLKAKAKFVLILDDMWKEFR---LEEV----GIPEPSEENGCKLVITTRSLGVCRFMDCKE----IGVELLSQ 299 (897)
Q Consensus 231 ~~~~l~~~l~~~~r~LlVlDdv~~~~~---~~~~----~~~~~~~~~gs~iivTTR~~~v~~~~~~~~----~~l~~L~~ 299 (897)
....+...+ ..+-|+++|.+-...+ -..+ ...+. ..|+.+|+||...++........ ..+. ++.
T Consensus 392 ~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~ 466 (771)
T TIGR01069 392 NISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE 466 (771)
T ss_pred HHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC
Confidence 222222222 3578999999865322 1112 11222 35789999999877654321111 1111 111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHHhh
Q 043332 300 EEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRG 364 (897)
Q Consensus 300 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l~~ 364 (897)
+.-.-.++-..|. + -...|-+|++++ |+|-.+..-|..+.. .....+..+++++..
T Consensus 467 ~~l~p~Ykl~~G~------~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 467 ETLSPTYKLLKGI------P-GESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred CCCceEEEECCCC------C-CCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 1000000000011 1 134577788776 788887777776654 234466666666543
No 386
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.00 E-value=0.11 Score=53.00 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=55.4
Q ss_pred cccchhhHHHHHHHHHHh----cCC---CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDL----MGD---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQ 211 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L----~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~ 211 (897)
.++|. .-..+.++..+ .+. +.=|++.+|..|+||.-+++.+++...+..-+-++|-...... -+....+
T Consensus 83 ~lfGQ--Hla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i- 159 (344)
T KOG2170|consen 83 ALFGQ--HLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI- 159 (344)
T ss_pred Hhhch--HHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH-
Confidence 56776 33444455544 332 4669999999999999999999998733222211111111111 1111110
Q ss_pred HHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc
Q 043332 212 NEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE 255 (897)
Q Consensus 212 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 255 (897)
+.-..+...++......-+|-|+|+|+++..
T Consensus 160 -------------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 160 -------------EDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -------------HHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 0112233334444444567899999999864
No 387
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.97 E-value=0.33 Score=53.60 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=35.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHHHHHcCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIAAALNQSL 222 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 222 (897)
..+|+++|..|+||||+++.++.... .....+.+..+.... .....+-+...++.++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 47999999999999999999987642 112223444444322 1122333445555555443
No 388
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.96 E-value=0.05 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999986
No 389
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.96 E-value=0.045 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++.|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 390
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.93 E-value=0.19 Score=47.20 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=26.9
Q ss_pred hcCCCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 157 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 157 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
+...+..||.+.|.+|.||||+|.+++....
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 4455678999999999999999999999873
No 391
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.91 E-value=0.049 Score=52.86 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+|+|-||=|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 392
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.90 E-value=0.19 Score=55.63 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=56.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHHHcCC------CCCChhHHH----
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAALNQS------LPENEDEVR---- 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~---- 230 (897)
-..++|.|..|+|||+|+.++..... +.+-+.++++-+++... ..++.+++...-... ...+.....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 46789999999999999999988752 23347888888876553 445555554321100 001111111
Q ss_pred --HHHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 231 --RAGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 231 --~~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
.+..+-+++. +++++|+++||+..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 2222334444 47899999999854
No 393
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.87 E-value=0.1 Score=58.07 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=34.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|| ++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 21 ~i~gr--e~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYER--SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCc--HHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 58898 77777777666543 347899999999999999999975
No 394
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.86 E-value=0.13 Score=53.39 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 150 VERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 150 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++..+++...+..+|.|+|.+|+|||||+..+.+..
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445556666789999999999999999999999986
No 395
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.85 E-value=0.063 Score=52.26 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999987
No 396
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.83 E-value=0.093 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.+.|.-|.||||+++.++...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999986
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.44 Score=56.32 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC--HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQNEIAAALNQSLPENEDEVRRAGRLSGML 239 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (897)
.+||+++|+.|+||||.+..++...... .....+..++.. .+. ..+-++...+.++.......+... +....+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAAL 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHh
Confidence 4799999999999999999999876221 112345555543 233 344556666666654432223333 23333333
Q ss_pred hccCeEEEEEcCCC
Q 043332 240 KAKAKFVLILDDMW 253 (897)
Q Consensus 240 ~~~~r~LlVlDdv~ 253 (897)
.++ =+|++|-.-
T Consensus 262 -~~~-D~VLIDTAG 273 (767)
T PRK14723 262 -GDK-HLVLIDTVG 273 (767)
T ss_pred -cCC-CEEEEeCCC
Confidence 232 377788764
No 398
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.78 E-value=0.015 Score=57.21 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
++.|+|..|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999843
No 399
>PRK06851 hypothetical protein; Provisional
Probab=93.78 E-value=1.6 Score=47.34 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 159 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
.+--+++.|.|.+|+|||||+++++.... ...++..++-|.+++
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 44458899999999999999999999873 345566665555554
No 400
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.76 E-value=0.045 Score=53.32 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|+|.|..|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 401
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.75 E-value=0.048 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 402
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.74 E-value=0.094 Score=58.05 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+-|.++|++|+|||++|+.++...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999765
No 403
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.74 E-value=0.099 Score=56.18 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-+.+||. ++.+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq--~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQ--DEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccH--HHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3468997 6667676666666666667799999999999999998765
No 404
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.74 E-value=0.054 Score=52.68 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 405
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.72 E-value=1.2 Score=45.63 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
+|+|.|..|+||||+|+.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998773
No 406
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.71 E-value=0.19 Score=57.54 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=32.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
-+++.|.|.+|+|||||+.+++.... ..-..+++++..+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs 302 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES 302 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC
Confidence 58999999999999999999988763 23356788876664
No 407
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.70 E-value=0.047 Score=51.57 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 408
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.70 E-value=0.067 Score=53.66 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.3
Q ss_pred HhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 156 DLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 156 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+...++++|+++|..|+|||||..++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556689999999999999999999998875
No 409
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.69 E-value=0.052 Score=50.82 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEIN 183 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~ 183 (897)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 410
>PRK08149 ATP synthase SpaL; Validated
Probab=93.69 E-value=0.3 Score=53.90 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=51.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHHHHHcCC-----C-CCChhHHH---
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIAAALNQS-----L-PENEDEVR--- 230 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-----~-~~~~~~~~--- 230 (897)
+...++|+|..|+|||||++.++... .-+.++...+.. ..+..++..+........ . ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 34679999999999999999998753 223444444543 334555555555432110 0 01111111
Q ss_pred ---HHHHHHHHH-hccCeEEEEEcCCCc
Q 043332 231 ---RAGRLSGML-KAKAKFVLILDDMWK 254 (897)
Q Consensus 231 ---~~~~l~~~l-~~~~r~LlVlDdv~~ 254 (897)
.+..+-+++ .+++++||++||+..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 111222333 258899999999854
No 411
>PRK14530 adenylate kinase; Provisional
Probab=93.67 E-value=0.056 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 412
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.65 E-value=0.083 Score=50.90 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=30.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
..++.+.|+.|+|||.+|++++.... . +.....+-+..+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~-~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF-V-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc-c-CCccchHHHhhhcc
Confidence 46788999999999999999999872 1 34445555665543
No 413
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.64 E-value=0.07 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..++++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 457999999999999999999998873
No 414
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.61 E-value=0.1 Score=56.11 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=40.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 136 LTTATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 136 ~~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|-+.+||. ++.+..|+..+.+..+.-|.|.|..|+||||+|+.+++-.
T Consensus 14 ~pf~~ivGq--~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 14 FPFTAIVGQ--EEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCHHHHhCh--HHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 455689998 6677777777777777778899999999999999998875
No 415
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.27 Score=50.64 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQK 188 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 188 (897)
-|+|.++|++|.|||+|+++++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 388999999999999999999999743
No 416
>PRK13949 shikimate kinase; Provisional
Probab=93.55 E-value=0.063 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-|.|+|+.|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 417
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.52 E-value=0.36 Score=53.38 Aligned_cols=89 Identities=9% Similarity=0.225 Sum_probs=51.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHHHcCC------CCCChhHHHH--
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAALNQS------LPENEDEVRR-- 231 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~~-- 231 (897)
....++|+|..|+|||||++.+++.. ..+.++++-+++... ..++..+.+..-+.. ...+.....+
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 34678999999999999999999864 224555666665543 334444443321110 0011111111
Q ss_pred ----HHHHHHHH-hccCeEEEEEcCCCc
Q 043332 232 ----AGRLSGML-KAKAKFVLILDDMWK 254 (897)
Q Consensus 232 ----~~~l~~~l-~~~~r~LlVlDdv~~ 254 (897)
+..+-+++ -+++.+|+++||+..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11222333 258899999999954
No 418
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.52 E-value=0.044 Score=57.21 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHH
Q 043332 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 151 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 210 (897)
..+++.+...+.+ +.++|+.|+|||++++....... ...| .+.-+..+...+...+
T Consensus 23 ~~ll~~l~~~~~p-vLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNGRP-VLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCTEE-EEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcCCc-EEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHH
Confidence 4455555555544 48999999999999999887542 1222 2334555554333333
No 419
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.50 E-value=0.054 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 420
>PRK14527 adenylate kinase; Provisional
Probab=93.49 E-value=0.071 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|.|+|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 421
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.43 E-value=0.086 Score=52.72 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=37.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEE-------EeCCCCCHHHH--HHHHHHHHcCC
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV-------TVSQPLDLIKL--QNEIAAALNQS 221 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~vs~~~~~~~~--~~~i~~~l~~~ 221 (897)
+..+|.++||+|+||||..+.++.+....+.+ ..++-. ....+.|+++. .++..++.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 35678899999999999999999887433222 223322 12334455554 45677766543
No 422
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.41 E-value=0.44 Score=50.75 Aligned_cols=88 Identities=13% Similarity=0.259 Sum_probs=49.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeC-CCCCHHHHHHHHHHHHcCC------CCCChhHHH----
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS-QPLDLIKLQNEIAAALNQS------LPENEDEVR---- 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~------~~~~~~~~~---- 230 (897)
...++|+|..|.|||||++.+++... -+..+..-+. +..+..++.......-+.. ...+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 46789999999999999999987641 2334444444 3334555555554432110 001111111
Q ss_pred --HHHHHHHHH-hccCeEEEEEcCCCc
Q 043332 231 --RAGRLSGML-KAKAKFVLILDDMWK 254 (897)
Q Consensus 231 --~~~~l~~~l-~~~~r~LlVlDdv~~ 254 (897)
.+..+-+++ -+++.+|+++||+..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111122223 257899999999854
No 423
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.39 E-value=0.51 Score=52.35 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=55.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCC------CCCChhHHH---
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQS------LPENEDEVR--- 230 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~--- 230 (897)
.-..++|.|..|+|||||+..++.... .++-+.++++-+++.. ...++..++...-... ...+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999999999988753 2233567788777654 3455666554321110 011111222
Q ss_pred ---HHHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 231 ---RAGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 231 ---~~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
.+..+-+++. +++++|+++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1222334443 47899999999964
No 424
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.39 E-value=0.15 Score=57.45 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=31.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
-.++.|.|.+|+|||||+.+++..... .-..++|++..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees 119 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEES 119 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcccc
Confidence 469999999999999999999988631 2346788886553
No 425
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.38 E-value=0.11 Score=51.00 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=29.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (897)
.++|.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999986 35675555554
No 426
>PRK13947 shikimate kinase; Provisional
Probab=93.35 E-value=0.066 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 427
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.34 E-value=0.39 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
+..|+|++|+|||+||.+++-...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999988653
No 428
>PRK05922 type III secretion system ATPase; Validated
Probab=93.32 E-value=0.41 Score=52.93 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=48.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-CCHHHHHHHHHHHHcCCC------CCChhHHH---
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQNEIAAALNQSL------PENEDEVR--- 230 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~--- 230 (897)
....++|+|..|+|||||++.+.+.. ..+....+-++.. ....+...+......... ..+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 34569999999999999999998764 2233333334332 233344444433222110 01111111
Q ss_pred ---HHHHHHHHH-hccCeEEEEEcCCCc
Q 043332 231 ---RAGRLSGML-KAKAKFVLILDDMWK 254 (897)
Q Consensus 231 ---~~~~l~~~l-~~~~r~LlVlDdv~~ 254 (897)
.+..+-+++ -+++++|+++||+..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111222333 258899999999864
No 429
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.32 E-value=0.26 Score=52.32 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEI 214 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 214 (897)
-..++|.|..|+|||+|++++++.. +-+.++++-+++..+ ..+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4579999999999999999999863 335788888876543 44455544
No 430
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.30 E-value=0.15 Score=59.51 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=53.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
..++|+ ++.++.|...+... +.+.++|.+|+||||+|+.+++... ...++..+|..-+.. +...+++.++.++
T Consensus 31 ~~vigq--~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np~~-~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQ--EHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNPED-PNNPKIRTVPAGK 103 (637)
T ss_pred HHcCCh--HHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCCCc-chHHHHHHHHHhc
Confidence 368897 66677776666554 4688999999999999999998752 334677888765433 5666777776655
Q ss_pred cC
Q 043332 219 NQ 220 (897)
Q Consensus 219 ~~ 220 (897)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 53
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.24 E-value=0.23 Score=59.92 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=87.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh-hccC------------CCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ-KETN------------KFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENED 227 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~------------~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 227 (897)
+.+++.|+|+.+.||||+.+.+.--.- ...+ .|+. ++..+++..++..-.... ..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStf-----------S~ 393 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTF-----------SG 393 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHH-----------HH
Confidence 457899999999999999999864410 0111 1221 222333322222111111 01
Q ss_pred HHHHHHHHHHHHhccCeEEEEEcCCCccccc---ccc----ccCCCCCCCCcEEEEEeCCchhhcccccce----EeccC
Q 043332 228 EVRRAGRLSGMLKAKAKFVLILDDMWKEFRL---EEV----GIPEPSEENGCKLVITTRSLGVCRFMDCKE----IGVEL 296 (897)
Q Consensus 228 ~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~---~~~----~~~~~~~~~gs~iivTTR~~~v~~~~~~~~----~~l~~ 296 (897)
.......+...+ ..+-|+++|..-...+. ..+ ...+. ..|+.+|+||...+++....... ..+.
T Consensus 394 ~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~- 468 (782)
T PRK00409 394 HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE- 468 (782)
T ss_pred HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-
Confidence 111222223332 35779999998653221 122 11222 35789999999977765432221 1111
Q ss_pred CCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHHhh
Q 043332 297 LSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRG 364 (897)
Q Consensus 297 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l~~ 364 (897)
++.+.-.-.++-..|.. -...|-+|++++ |+|-.+..-|..+... .......++..+..
T Consensus 469 ~d~~~l~~~Ykl~~G~~-------g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 469 FDEETLRPTYRLLIGIP-------GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred EecCcCcEEEEEeeCCC-------CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 11110000010001110 134577788776 7888887777766542 34466666666543
No 432
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.24 E-value=0.14 Score=58.37 Aligned_cols=128 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE---eCCCCCHHHHHHHHHHHHcCCCCCChhHH-----------
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT---VSQPLDLIKLQNEIAAALNQSLPENEDEV----------- 229 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~i~~~l~~~~~~~~~~~----------- 229 (897)
.|+|+|+.|+|||||.+.+........+......-+. ..+..+....-..++..+....+......
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Q ss_pred --------------HHHHHHHHHHhccCeEEEEEc------CCCccccccccccCCCCCCCCcEEEEEeCCchhhccccc
Q 043332 230 --------------RRAGRLSGMLKAKAKFVLILD------DMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCRFMDC 289 (897)
Q Consensus 230 --------------~~~~~l~~~l~~~~r~LlVlD------dv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~~~ 289 (897)
+..+.....+.-...-+|||| |+...+.+++....++ |+ ||+.|.++........
T Consensus 430 ~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~va~ 504 (530)
T COG0488 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRVAT 504 (530)
T ss_pred hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhhcc
Q ss_pred ceEeccC
Q 043332 290 KEIGVEL 296 (897)
Q Consensus 290 ~~~~l~~ 296 (897)
..+.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
No 433
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.23 E-value=0.1 Score=54.44 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=35.7
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
.-+++.|+|.+|+|||++|.++..... ..+..++||+..+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEecCCH
Confidence 468999999999999999999999863 347889999988753
No 434
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.22 E-value=0.27 Score=54.21 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=54.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhh----------ccCCCcEEEEEEeCCCCCHHHHHHHHHHHHc-CCC------CC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQK----------ETNKFNVVIWVTVSQPLDLIKLQNEIAAALN-QSL------PE 224 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----------~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~------~~ 224 (897)
-..++|.|-.|+|||||+.++++.... .++.-..++++-+++.....+.+...+..-+ ... ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 467899999999999999999987521 0001115677777777555555554444433 110 01
Q ss_pred ChhHHH------HHHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 225 NEDEVR------RAGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 225 ~~~~~~------~~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
+..... .+..+-+++. +++++|+++||+..
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 111111 1222334444 47899999999854
No 435
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.18 E-value=0.032 Score=55.79 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.+++|+|..|.||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 78999999999999999999843
No 436
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.17 E-value=0.3 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..|.++|++|+|||++|+.++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 578999999999999999999765
No 437
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.15 E-value=0.072 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999875
No 438
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.15 E-value=0.34 Score=53.85 Aligned_cols=92 Identities=22% Similarity=0.344 Sum_probs=55.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCC------CCCChhHHHH--
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQS------LPENEDEVRR-- 231 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~-- 231 (897)
.-..++|+|..|+|||||+.+++..... ++-+.++++-+++.. .+.++.+++...=... ...+.....+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467999999999999999998887532 223567777777654 3455555555421110 0011111111
Q ss_pred ----HHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 232 ----AGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 232 ----~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
+..+-+++. +++++||++|++..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 222333332 57899999999854
No 439
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.14 E-value=0.28 Score=50.52 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=49.3
Q ss_pred eeEEEEEcCCCchHHHHH-HHHHHHHhhccCCCcEE-EEEEeCCCC-CHHHHHHHHHHHHcCC------CCCChhHHHH-
Q 043332 162 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVV-IWVTVSQPL-DLIKLQNEIAAALNQS------LPENEDEVRR- 231 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~- 231 (897)
-..++|+|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++...-... ...++....+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 457899999999999996 5566542 22344 666666654 3445555554321100 0011111111
Q ss_pred -----HHHHHHHHh-ccCeEEEEEcCCCcc
Q 043332 232 -----AGRLSGMLK-AKAKFVLILDDMWKE 255 (897)
Q Consensus 232 -----~~~l~~~l~-~~~r~LlVlDdv~~~ 255 (897)
+-.+-+++. +++.+|+++||+...
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 112222222 578999999999653
No 440
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.13 E-value=0.033 Score=55.55 Aligned_cols=177 Identities=18% Similarity=0.128 Sum_probs=101.2
Q ss_pred cccccEEEccccccccCCC----CCCCCCCCccEEEccCCCC---cccCChh------HhhCCCCccEEEecCCCCC-cC
Q 043332 496 KENLERVSLMKNNIKEIPS----YMSPHCDILSTLLLQANGN---LWTIPEC------FFVHMHGLKVLNLSHTDIE-VL 561 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~---~~~~~~~------~~~~l~~Lr~L~L~~~~i~-~l 561 (897)
...+..+++++|.|..-.. ....+-.+|++.+++.-.. ...++.. .+-+|++|+..+||+|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3456777888886543211 1122346677777765411 1112211 2357788888888888865 44
Q ss_pred Cc----ccccCcccceeeccccccccCCc--chh-------------ccccCCEeeccCCcCcccCcc-----ccCCCCC
Q 043332 562 PS----SVSDLTNLRSLLLRYCLRLRRVP--SVA-------------KLLALHYLDLEATRIEEVPEG-----MEMLENL 617 (897)
Q Consensus 562 p~----~i~~l~~L~~L~L~~~~~~~~lp--~~~-------------~l~~L~~L~l~~~~l~~lp~~-----~~~l~~L 617 (897)
|+ -|++.+.|.+|.+++|. +..+. .++ .-+.|++.....|++...|.. +..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 43 35667788888888874 33222 132 345788888888877766543 2222577
Q ss_pred CEEeCCCCCCCcCCCCc-------ccCCcccCeEecccCchhhhhcH----HHHHhhhcccceeEEEeccc
Q 043332 618 SYLYLYSLPLKKFPTGI-------LPRLRDLYKLKLSFGREALRETV----EEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 618 ~~L~l~~~~~~~~~~~~-------l~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~~L~~L~l~~~~l 677 (897)
..+.+..|.+.. .++ +..+.+|++|++. .+..+..+- ..+...+. |+.|++..|-+
T Consensus 188 k~vki~qNgIrp--egv~~L~~~gl~y~~~LevLDlq-DNtft~~gS~~La~al~~W~~-lrEL~lnDCll 254 (388)
T COG5238 188 KEVKIQQNGIRP--EGVTMLAFLGLFYSHSLEVLDLQ-DNTFTLEGSRYLADALCEWNL-LRELRLNDCLL 254 (388)
T ss_pred eeEEeeecCcCc--chhHHHHHHHHHHhCcceeeecc-ccchhhhhHHHHHHHhcccch-hhhccccchhh
Confidence 888888776642 211 3456788888887 333332222 33344555 67777665543
No 441
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.12 E-value=0.086 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999974
No 442
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.10 E-value=0.078 Score=50.24 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
|.|+|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999875
No 443
>PRK05439 pantothenate kinase; Provisional
Probab=93.05 E-value=0.46 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..-+|+|.|.+|+||||+|+.+....
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998865
No 444
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.04 E-value=0.075 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+++|+|..|.|||||++.++.-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 35689999999999999999998764
No 445
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.04 E-value=0.4 Score=52.99 Aligned_cols=89 Identities=11% Similarity=0.274 Sum_probs=52.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHHHcCC------CCCChhHHHH--
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAALNQS------LPENEDEVRR-- 231 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~~-- 231 (897)
+...++|+|..|+|||||.+.+++.. .-+.++++-+++... ..++....+..-+.. ...+.....+
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 34679999999999999999999864 235677777776543 344443333221110 0011111111
Q ss_pred ----HHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 232 ----AGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 232 ----~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
+..+-+++. +++++|+++||+..
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112223332 58899999999864
No 446
>PRK13975 thymidylate kinase; Provisional
Probab=93.03 E-value=0.087 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|.|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 447
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.011 Score=56.41 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=16.6
Q ss_pred cccEEEEecCCCCCCCChhhhhhccCCccEEEEecc
Q 043332 771 DLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVC 806 (897)
Q Consensus 771 ~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 806 (897)
+|+.|+|++|+.+++- .+..+..+++|+.|.+.+.
T Consensus 152 ~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred chheeeccCCCeechh-HHHHHHHhhhhHHHHhcCc
Confidence 5555555555555442 2223344445555544443
No 448
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.02 E-value=0.17 Score=53.76 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=34.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
.+++.+.|.||+||||+|.+.+-.... ....+.=|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~---~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE---SGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH---cCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999997776632 224466676666555554443
No 449
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.01 E-value=0.093 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.+++.|.|+.|.||||+.+.++.-
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998754
No 450
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.01 E-value=0.069 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999874
No 451
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.00 E-value=0.14 Score=48.25 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 149 VVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 149 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+++|.+++.+ +++.++|..|+|||||+..+..+.
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 34666667765 789999999999999999988863
No 452
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.00 E-value=0.29 Score=47.39 Aligned_cols=117 Identities=18% Similarity=0.082 Sum_probs=61.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC---CCCHHHHHHHHH--HH--HcCC--CC--CChhHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQNEIA--AA--LNQS--LP--ENEDEVR 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~--~~--l~~~--~~--~~~~~~~ 230 (897)
...|-|+|..|-||||.|..++-+.. .+-..+..+..-. ..+....++.+- .. .+.. +. .......
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 46899999999999999998888763 2222333343222 234444444321 00 0111 01 1111111
Q ss_pred H----HHHHHHHHhccCeEEEEEcCCCccc-----cccccccCCCCCCCCcEEEEEeCCc
Q 043332 231 R----AGRLSGMLKAKAKFVLILDDMWKEF-----RLEEVGIPEPSEENGCKLVITTRSL 281 (897)
Q Consensus 231 ~----~~~l~~~l~~~~r~LlVlDdv~~~~-----~~~~~~~~~~~~~~gs~iivTTR~~ 281 (897)
. .....+.+.+++-=+||||.+-... ..+++...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 2222334445566799999985432 2223332333334567899999974
No 453
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.99 E-value=0.23 Score=50.12 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=33.2
Q ss_pred HHHHHhc--CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 152 RIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 152 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
+++..+. ..+..+|+|.|++|+|||||...+..... ..++--.++=|+-|..++
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCC
Confidence 3444443 23568999999999999999999999884 333333344455454444
No 454
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.98 E-value=7.1 Score=41.72 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=33.7
Q ss_pred eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 291 EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 291 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
.+++++++++|+..++.-.............+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 4789999999999999766544332112334556677777779999644
No 455
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.97 E-value=0.067 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
|.|+|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 456
>PRK14529 adenylate kinase; Provisional
Probab=92.97 E-value=0.33 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
|.|.|++|+||||+|+.++...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999886
No 457
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.95 E-value=0.22 Score=51.03 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=39.5
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHH
Q 043332 151 ERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (897)
Q Consensus 151 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 210 (897)
.+++..+. ..+..+|+|.|.+|+|||||.-.+.... ...++--.++=|+-|.+++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 34444443 3456799999999999999999998887 33444444555555666543333
No 458
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.93 E-value=0.086 Score=47.35 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 459
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.93 E-value=0.087 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+.|.|+|+.|+||||+|+.+++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999875
No 460
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.92 E-value=0.098 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+|+|+|.+|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.91 E-value=0.077 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 462
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.91 E-value=0.23 Score=49.31 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
+|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
No 463
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.90 E-value=0.92 Score=50.40 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhc-----CC--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEE
Q 043332 147 KKVVERIWEDLM-----GD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199 (897)
Q Consensus 147 ~~~~~~l~~~L~-----~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 199 (897)
.+.++++.+||. .+ +.+|+.|.|++|.||||.++.++... .+..+-|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 345666777776 33 35799999999999999999999875 34556665
No 464
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.88 E-value=0.34 Score=53.49 Aligned_cols=89 Identities=13% Similarity=0.313 Sum_probs=47.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHHHHHcCCC------CCChhHHH---
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIAAALNQSL------PENEDEVR--- 230 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~--- 230 (897)
....++|+|..|+|||||++.++.... . +..+.+.+.. .....++..+.+..-+... ..+.....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 346799999999999999998887641 1 2222233333 3334445544433211110 01111111
Q ss_pred ---HHHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 231 ---RAGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 231 ---~~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
.+..+-+++. +++++|+++||+..
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1112223332 57899999999854
No 465
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.87 E-value=0.1 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998877654
No 466
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.17 Score=57.71 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=37.2
Q ss_pred cccchh-hHHHHHHHHHHhcCCC---------eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEK-TKKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~-~~~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++-|.+ ..+++.++++.|.+.. ++=|..+|++|.|||.||++++.+.
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 567753 3566778888887642 4568999999999999999999985
No 467
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.86 E-value=0.3 Score=53.94 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=50.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCC------CCChhHHH----
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSL------PENEDEVR---- 230 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 230 (897)
....++|+|..|.|||||++.++.... ....++...-.+.....++....+..-+... ..+.....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK----ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 346889999999999999999988642 1122333222233555566555544422110 01111111
Q ss_pred --HHHHHHHHHh-ccCeEEEEEcCCCcc
Q 043332 231 --RAGRLSGMLK-AKAKFVLILDDMWKE 255 (897)
Q Consensus 231 --~~~~l~~~l~-~~~r~LlVlDdv~~~ 255 (897)
.+..+-+++. ++++.||++||+...
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1111222222 578999999998653
No 468
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.83 E-value=0.13 Score=55.05 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=35.3
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 137 TTATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+-+.++|. +..++.+.-.+.+.+..=+.+.|..|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq--~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQ--EEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCH--HHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34578997 5666666544443444458899999999999999998765
No 469
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.77 E-value=0.096 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEIN 183 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~ 183 (897)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999976
No 470
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.73 E-value=0.097 Score=50.22 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHh
Q 043332 165 IGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
|.|.|..|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999873
No 471
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.72 E-value=0.24 Score=55.77 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=31.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
-.++.|.|.+|+|||||+.+++..... .-..++|++..+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs 133 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES 133 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC
Confidence 578999999999999999999887632 2235788876543
No 472
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.72 E-value=0.43 Score=53.28 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=53.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhc--cCCCcEEEEEEeCCCC-CHHHHHHHHHHHHcCC------CCCChhHHH--
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE--TNKFNVVIWVTVSQPL-DLIKLQNEIAAALNQS------LPENEDEVR-- 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~-- 230 (897)
-..++|.|..|+|||||+.++++..... ... ..++++-+++.. ...++..++...=... ...+.....
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~-~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESE-FAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCc-eEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 4568999999999999999999875211 011 156677776654 3445555554321110 001111111
Q ss_pred ----HHHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 231 ----RAGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 231 ----~~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
.+..+-+++. +++++|+++||+..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 2222344554 58899999999864
No 473
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.69 E-value=0.87 Score=46.89 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=36.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
-.++.|.|.+|+|||++|.+++.+... .+-..++|++... +..++...++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~--~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAK--KQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCceEEEeCCC--CHHHHHHHHHH
Confidence 468999999999999999999887632 2234678887666 34555555543
No 474
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.66 E-value=0.095 Score=50.30 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~ 185 (897)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999975
No 475
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.65 E-value=0.72 Score=49.31 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...+|+++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999999873
No 476
>PRK15453 phosphoribulokinase; Provisional
Probab=92.64 E-value=0.12 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+|+|.|.+|+||||+|+.+++..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999766
No 477
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.63 E-value=0.084 Score=28.92 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=10.4
Q ss_pred CCccEEEecCCCCCcccc
Q 043332 862 NSLQEIEVRGCPKLKRLS 879 (897)
Q Consensus 862 p~L~~L~i~~C~~L~~lp 879 (897)
|+|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468888888886 77776
No 478
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.58 E-value=0.091 Score=47.63 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=26.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
.+-|.|.|-+|+||||+|.+++... . .-|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhH
Confidence 3568899999999999999999654 1 346666653
No 479
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.57 E-value=0.3 Score=48.43 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..|+|.|..|+||||+++.+++...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999873
No 480
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.55 E-value=0.16 Score=54.02 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=28.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
+++.+.|-||+||||+|.+.+-..... + ..+.-|+.....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~-G--~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR-G--KRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-T--S-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC-C--CCeeEeecCCCc
Confidence 689999999999999999888877432 2 234545544443
No 481
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.54 E-value=0.1 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
|++|+|+.|+|||||+.++.....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999873
No 482
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.52 E-value=0.22 Score=57.55 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+++|. +..++.+...+......-|.|+|..|+|||++|+.+++..
T Consensus 65 ~~iiGq--s~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQ--EEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCc--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 368998 5667777766665555566899999999999999998754
No 483
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.52 E-value=0.46 Score=52.81 Aligned_cols=90 Identities=16% Similarity=0.262 Sum_probs=49.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCC------CCCChhHHHH---
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQS------LPENEDEVRR--- 231 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 231 (897)
.-..++|+|..|+|||||++.++.... .-..+++..-.+.....++.+.+...-+.. ...+.....+
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999987641 112344333333344555555554331110 0011111111
Q ss_pred ---HHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 232 ---AGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 232 ---~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
+..+-+++. +++++|+++||+..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112223332 57899999999854
No 484
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.52 E-value=2 Score=44.93 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 149 VVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 149 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.-+++...+..+. .....++|+.|+||+++|..++...
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 3456667776665 5688899999999999999998875
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.51 E-value=0.32 Score=53.77 Aligned_cols=89 Identities=13% Similarity=0.314 Sum_probs=50.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-CCHHHHHHHHHHHHcCC------CCCChhHHHH--
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQNEIAAALNQS------LPENEDEVRR-- 231 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~------~~~~~~~~~~-- 231 (897)
....++|+|..|+|||||++.+++.. +.+..+++.+++. ..+.++..+....-... .........+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 45689999999999999999988753 3344556555543 33445555443210000 0011111111
Q ss_pred ----HHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 232 ----AGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 232 ----~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
+..+-+++. +++++|+++||+..
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 112223332 57899999999964
No 486
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.18 Score=58.22 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=72.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK 240 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (897)
..+.+-++|++|.|||.||+++++.. ...|- .+... ++.... .......+..+...-.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi-----~v~~~----~l~sk~----------vGesek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFI-----SVKGS----ELLSKW----------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEE-----EeeCH----HHhccc----------cchHHHHHHHHHHHHH
Confidence 35689999999999999999999965 23332 22221 111100 1122334445554444
Q ss_pred ccCeEEEEEcCCCccccc-------------cccccCCCCC--CCCcEEEEEeCCchhhc----cccc-ce-EeccCCCH
Q 043332 241 AKAKFVLILDDMWKEFRL-------------EEVGIPEPSE--ENGCKLVITTRSLGVCR----FMDC-KE-IGVELLSQ 299 (897)
Q Consensus 241 ~~~r~LlVlDdv~~~~~~-------------~~~~~~~~~~--~~gs~iivTTR~~~v~~----~~~~-~~-~~l~~L~~ 299 (897)
+...+.|.+|+++....+ ..+....... ..+..||-||....... +.+. .. +.+..-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 567899999998642111 1122222211 22333444454332221 1111 22 78888889
Q ss_pred HHHHHHHHHhhhc
Q 043332 300 EEALNLFLDKVRI 312 (897)
Q Consensus 300 ~ea~~Lf~~~~~~ 312 (897)
++..+.|+.....
T Consensus 413 ~~r~~i~~~~~~~ 425 (494)
T COG0464 413 EERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887653
No 487
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.50 E-value=0.39 Score=53.57 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+++|+|..|+|||||++.+....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 345789999999999999999888764
No 488
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.38 E-value=0.089 Score=28.83 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=6.8
Q ss_pred CccEEEecCCCCCcCC
Q 043332 547 GLKVLNLSHTDIEVLP 562 (897)
Q Consensus 547 ~Lr~L~L~~~~i~~lp 562 (897)
+|++|+|++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666555544
No 489
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.37 E-value=0.85 Score=50.93 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=51.9
Q ss_pred eeEEEEEcCCCchHHHHH-HHHHHHHhh----ccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcC-C-------CCCChhH
Q 043332 162 VTKIGVWGMGGIGKTTIM-KEINNRLQK----ETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQ-S-------LPENEDE 228 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-~-------~~~~~~~ 228 (897)
-..++|.|..|+|||+|| ..+.+.... ..+.-+.++++-+++..+...-..+.++.-+. . ..++...
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 456899999999999997 667776411 11234567888888765433223333333221 0 0111111
Q ss_pred HH-----HHHHHHHHH-hccCeEEEEEcCCCc
Q 043332 229 VR-----RAGRLSGML-KAKAKFVLILDDMWK 254 (897)
Q Consensus 229 ~~-----~~~~l~~~l-~~~~r~LlVlDdv~~ 254 (897)
.+ ....+-+++ -+++.+|+|+||+..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 111122333 257899999999864
No 490
>PLN02200 adenylate kinase family protein
Probab=92.35 E-value=0.12 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|.|++|+||||+|+.++...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 491
>PRK13695 putative NTPase; Provisional
Probab=92.32 E-value=0.19 Score=48.74 Aligned_cols=24 Identities=46% Similarity=0.721 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHh
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
.|+|+|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998763
No 492
>PTZ00494 tuzin-like protein; Provisional
Probab=92.31 E-value=3 Score=45.46 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=86.5
Q ss_pred cccccchhhH-HHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 138 TATLAGEKTK-KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 138 ~~~~vGr~~~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
...+|.|+.+ .-+.+++..+.....+++.+.|.-|.||++|.+...... . -..++|.+.... +-++.|.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~E---DtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGTE---DTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCCc---chHHHHHH
Confidence 3467888542 234455555555678999999999999999999877764 1 135778877654 35677888
Q ss_pred HHcCCCCCC-hhHHHHHHHHHHHH---hccCeEEEEEc--CCCccc-cccccccCCCCCCCCcEEEEEeCCchhhccc--
Q 043332 217 ALNQSLPEN-EDEVRRAGRLSGML---KAKAKFVLILD--DMWKEF-RLEEVGIPEPSEENGCKLVITTRSLGVCRFM-- 287 (897)
Q Consensus 217 ~l~~~~~~~-~~~~~~~~~l~~~l---~~~~r~LlVlD--dv~~~~-~~~~~~~~~~~~~~gs~iivTTR~~~v~~~~-- 287 (897)
+++.+.-+. .|..+-+.+-...- ..++.=+||+- +-.+-. ...+.. .+...-.-|+|++--=.+.+....
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhcc
Confidence 887643211 12222222222211 13333344442 111100 011100 011113346677543333222111
Q ss_pred --ccceEeccCCCHHHHHHHHHHh
Q 043332 288 --DCKEIGVELLSQEEALNLFLDK 309 (897)
Q Consensus 288 --~~~~~~l~~L~~~ea~~Lf~~~ 309 (897)
.-..|-+++++.++|.+.-.+.
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhcc
Confidence 1122788999999998876654
No 493
>PRK13946 shikimate kinase; Provisional
Probab=92.28 E-value=0.12 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+.|.++|+.|+||||+++.+++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999986
No 494
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.25 E-value=0.47 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+++|+|..|+|||||++.+....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc
Confidence 45789999999999999999988754
No 495
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.24 E-value=0.098 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+++|+|..|+|||||.+.++...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3589999999999999999998875
No 496
>PRK04182 cytidylate kinase; Provisional
Probab=92.22 E-value=0.12 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|.|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 497
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.22 E-value=0.39 Score=56.31 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=46.5
Q ss_pred cccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
...++|. ++.++.+...+.... -+.++|++|+||||+|+.+++... ...|...+++.-+.. +...++..++.+
T Consensus 17 ~~~viG~--~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~~-~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQ--EEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPED-PNMPRIVEVPAG 89 (608)
T ss_pred HhhccCH--HHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCCC-CchHHHHHHHHh
Confidence 3478897 556665655555443 455999999999999999998763 223333444332222 334456666655
Q ss_pred Hc
Q 043332 218 LN 219 (897)
Q Consensus 218 l~ 219 (897)
++
T Consensus 90 ~g 91 (608)
T TIGR00764 90 EG 91 (608)
T ss_pred hc
Confidence 54
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.20 E-value=0.12 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+++|+|..|.||||+++.++...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999975
No 499
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.18 E-value=0.29 Score=57.09 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=36.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
-++..|.|.+|.||||+++.+..........-...+.+.........++.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3688999999999999999988875322111124566666665555555555544
No 500
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.14 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-+-|..+|++|.|||-||++||.+.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3568899999999999999999986
Done!