Query 043332
Match_columns 897
No_of_seqs 529 out of 4998
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.2E-46 1.8E-50 430.9 23.2 310 142-476 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.3E-38 8E-43 368.0 19.2 285 140-469 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-37 2.2E-41 394.2 28.5 310 137-475 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-33 4.5E-38 332.5 27.3 308 137-473 122-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 4.8E-24 1.6E-28 252.4 28.1 164 481-647 18-189 (606)
6 2z63_A TOLL-like receptor 4, v 99.9 2.6E-24 8.8E-29 252.8 20.9 163 481-647 14-185 (570)
7 4ecn_A Leucine-rich repeat pro 99.9 2.9E-24 1E-28 258.0 16.7 318 537-883 481-826 (876)
8 1o6v_A Internalin A; bacterial 99.9 5.4E-23 1.8E-27 234.5 26.0 321 495-873 66-386 (466)
9 1o6v_A Internalin A; bacterial 99.9 4.2E-23 1.4E-27 235.4 24.9 322 496-875 45-366 (466)
10 4fmz_A Internalin; leucine ric 99.9 4E-23 1.4E-27 226.2 23.7 303 495-873 42-344 (347)
11 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-23 5.6E-28 242.8 21.7 363 484-887 10-469 (520)
12 4eco_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 253.5 16.0 310 543-882 203-585 (636)
13 3v47_A TOLL-like receptor 5B a 99.9 4.4E-23 1.5E-27 235.0 24.0 361 482-879 18-412 (455)
14 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-23 1E-27 242.5 22.0 191 484-679 15-210 (549)
15 3t6q_A CD180 antigen; protein- 99.9 4.2E-23 1.4E-27 244.3 22.2 163 481-647 19-187 (606)
16 4ecn_A Leucine-rich repeat pro 99.9 3E-23 1E-27 249.3 19.8 351 489-876 440-841 (876)
17 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.2E-22 1.4E-26 232.9 28.5 364 483-887 40-498 (562)
18 4fmz_A Internalin; leucine ric 99.9 2.2E-22 7.5E-27 220.4 23.5 288 487-847 57-344 (347)
19 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-22 3.7E-27 240.7 22.7 175 499-679 13-195 (606)
20 3rgz_A Protein brassinosteroid 99.9 7.6E-23 2.6E-27 247.7 21.3 352 496-885 199-561 (768)
21 3t6q_A CD180 antigen; protein- 99.9 2.9E-22 9.8E-27 237.1 25.1 149 711-886 374-524 (606)
22 3rgz_A Protein brassinosteroid 99.9 7.9E-23 2.7E-27 247.6 17.7 176 498-677 270-454 (768)
23 3j0a_A TOLL-like receptor 5; m 99.9 4E-22 1.4E-26 244.0 22.8 358 482-880 12-398 (844)
24 4eco_A Uncharacterized protein 99.9 1.3E-22 4.6E-27 239.8 17.9 322 489-873 239-598 (636)
25 2id5_A Lingo-1, leucine rich r 99.9 6.4E-22 2.2E-26 226.7 22.9 307 484-847 21-331 (477)
26 1ziw_A TOLL-like receptor 3; i 99.9 4.7E-22 1.6E-26 238.5 22.4 312 482-807 12-364 (680)
27 3o6n_A APL1; leucine-rich repe 99.9 4E-22 1.4E-26 221.9 20.1 302 497-873 45-350 (390)
28 2id5_A Lingo-1, leucine rich r 99.9 2.5E-22 8.6E-27 230.1 17.9 311 500-873 14-331 (477)
29 2z63_A TOLL-like receptor 4, v 99.9 3E-22 1E-26 235.2 18.5 362 494-880 49-511 (570)
30 3o6n_A APL1; leucine-rich repe 99.9 2E-22 6.9E-27 224.4 16.2 290 485-847 56-350 (390)
31 2z7x_B TOLL-like receptor 1, v 99.9 1E-21 3.6E-26 227.6 22.8 344 500-888 3-446 (520)
32 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-21 4.9E-26 228.2 21.0 132 493-625 46-182 (549)
33 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-21 1.2E-25 231.0 24.8 308 494-807 46-441 (680)
34 3oja_B Anopheles plasmodium-re 99.9 3.5E-22 1.2E-26 235.0 15.3 300 497-847 51-356 (597)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-21 6.2E-26 220.0 20.4 166 495-680 40-206 (457)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-21 5.8E-26 220.3 19.6 297 517-872 38-349 (457)
37 3oja_B Anopheles plasmodium-re 99.9 1.2E-21 4.1E-26 230.3 19.0 304 519-873 49-356 (597)
38 3v47_A TOLL-like receptor 5B a 99.9 1.4E-20 4.7E-25 214.3 21.6 350 499-887 12-396 (455)
39 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-20 4.8E-25 204.4 17.2 290 522-873 34-331 (332)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.1E-20 1.1E-24 217.1 21.4 140 499-647 33-177 (562)
41 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-19 5.2E-24 215.1 25.6 156 482-641 39-199 (635)
42 1xku_A Decorin; proteoglycan, 99.8 1E-19 3.5E-24 197.5 21.6 182 486-678 43-229 (330)
43 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4E-24 222.1 24.5 154 493-647 44-212 (844)
44 1jl5_A Outer protein YOPM; leu 99.8 1.2E-19 4E-24 205.0 21.0 318 496-886 90-422 (454)
45 2ft3_A Biglycan; proteoglycan, 99.8 8.8E-20 3E-24 198.1 18.1 286 498-847 34-331 (332)
46 4fcg_A Uncharacterized protein 99.8 1.5E-19 5E-24 195.4 17.7 147 497-647 81-237 (328)
47 1xku_A Decorin; proteoglycan, 99.8 2E-19 7E-24 195.1 17.1 291 498-872 32-329 (330)
48 1jl5_A Outer protein YOPM; leu 99.8 3.7E-19 1.2E-23 200.9 18.7 308 498-885 72-382 (454)
49 1ogq_A PGIP-2, polygalacturona 99.8 5.1E-20 1.8E-24 197.8 8.2 248 497-811 50-306 (313)
50 2z80_A TOLL-like receptor 2, v 99.8 4.3E-19 1.5E-23 194.4 13.8 188 485-678 42-235 (353)
51 1ozn_A Reticulon 4 receptor; N 99.8 3.9E-19 1.3E-23 188.5 12.2 160 485-647 22-185 (285)
52 2z80_A TOLL-like receptor 2, v 99.8 1.1E-18 3.7E-23 191.3 14.8 266 501-806 35-311 (353)
53 4g8a_A TOLL-like receptor 4; l 99.8 2.8E-18 9.4E-23 204.2 19.4 121 487-608 65-189 (635)
54 3g06_A SSPH2 (leucine-rich rep 99.8 6.8E-18 2.3E-22 196.3 22.2 155 498-679 41-195 (622)
55 3zyj_A Leucine-rich repeat-con 99.8 3.5E-18 1.2E-22 193.1 17.2 234 482-747 51-290 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 3.9E-18 1.3E-22 193.4 17.3 234 482-747 62-301 (452)
57 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-18 4.4E-23 186.9 11.7 248 521-851 50-306 (313)
58 3o53_A Protein LRIM1, AGAP0063 99.8 6.2E-20 2.1E-24 197.7 1.1 287 499-876 12-300 (317)
59 3g06_A SSPH2 (leucine-rich rep 99.8 7.3E-18 2.5E-22 196.1 18.4 265 521-882 40-304 (622)
60 4fcg_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 184.4 14.7 80 546-626 81-161 (328)
61 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7E-23 185.0 12.5 142 501-647 11-158 (306)
62 1ozn_A Reticulon 4 receptor; N 99.7 9.3E-18 3.2E-22 177.9 14.8 170 500-675 14-187 (285)
63 2z66_A Variable lymphocyte rec 99.7 8.3E-18 2.8E-22 180.3 13.9 189 482-677 15-211 (306)
64 3zyi_A Leucine-rich repeat-con 99.7 1.3E-17 4.5E-22 189.1 14.3 172 498-678 55-231 (452)
65 2o6q_A Variable lymphocyte rec 99.7 6.3E-17 2.2E-21 169.8 16.9 189 483-677 25-217 (270)
66 3zyj_A Leucine-rich repeat-con 99.7 4E-17 1.4E-21 184.4 16.1 172 498-678 44-220 (440)
67 3o53_A Protein LRIM1, AGAP0063 99.7 2.3E-18 7.7E-23 185.5 3.6 266 522-878 11-278 (317)
68 3oja_A Leucine-rich immune mol 99.7 4.6E-18 1.6E-22 193.9 3.5 150 519-678 32-182 (487)
69 3ogk_B Coronatine-insensitive 99.7 3.3E-17 1.1E-21 193.1 10.3 173 497-673 164-350 (592)
70 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.2E-21 168.3 12.6 189 484-679 17-214 (276)
71 1p9a_G Platelet glycoprotein I 99.7 2.3E-16 8E-21 166.9 14.5 176 497-680 10-187 (290)
72 2xwt_C Thyrotropin receptor; s 99.7 5.7E-17 1.9E-21 166.9 9.5 189 486-680 23-220 (239)
73 1z7x_W Ribonuclease inhibitor; 99.7 3.6E-18 1.2E-22 194.6 -0.2 140 712-873 255-409 (461)
74 2o6q_A Variable lymphocyte rec 99.7 4.5E-16 1.6E-20 163.3 15.8 177 497-680 16-196 (270)
75 1z7x_W Ribonuclease inhibitor; 99.7 4.1E-18 1.4E-22 194.2 -1.0 344 497-886 3-398 (461)
76 1wwl_A Monocyte differentiatio 99.7 1.8E-17 6E-22 178.0 3.9 241 521-806 43-306 (312)
77 2z62_A TOLL-like receptor 4, v 99.7 8.7E-16 3E-20 161.8 15.9 171 501-677 11-189 (276)
78 1p9a_G Platelet glycoprotein I 99.7 5.2E-16 1.8E-20 164.2 13.9 187 483-678 19-208 (290)
79 3ogk_B Coronatine-insensitive 99.7 6.1E-17 2.1E-21 190.8 7.3 350 498-876 139-526 (592)
80 1h6u_A Internalin H; cell adhe 99.6 1.1E-15 3.6E-20 163.6 15.3 172 496-681 40-211 (308)
81 3m19_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 154.2 18.2 161 483-647 23-187 (251)
82 3m19_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 157.1 14.9 175 497-678 14-192 (251)
83 3rfs_A Internalin B, repeat mo 99.6 9.3E-16 3.2E-20 161.0 13.0 174 496-677 40-217 (272)
84 1h6u_A Internalin H; cell adhe 99.6 1.6E-15 5.3E-20 162.3 13.7 150 518-679 38-187 (308)
85 2p1m_B Transport inhibitor res 99.6 6.7E-17 2.3E-21 190.6 2.8 350 498-874 106-518 (594)
86 1wwl_A Monocyte differentiatio 99.6 1.5E-16 5.3E-21 170.7 5.0 240 497-781 43-307 (312)
87 3oja_A Leucine-rich immune mol 99.6 3.3E-16 1.1E-20 178.5 7.0 171 496-679 33-205 (487)
88 2xwt_C Thyrotropin receptor; s 99.6 1.1E-15 3.7E-20 157.2 9.5 136 506-647 20-164 (239)
89 1h6t_A Internalin B; cell adhe 99.6 1E-14 3.4E-19 154.5 14.5 170 496-679 45-214 (291)
90 2qen_A Walker-type ATPase; unk 99.6 7.8E-14 2.7E-18 152.4 21.6 292 137-469 10-349 (350)
91 4ay9_X Follicle-stimulating ho 99.6 5.7E-15 2E-19 161.1 11.4 234 501-805 13-255 (350)
92 2p1m_B Transport inhibitor res 99.6 7.6E-16 2.6E-20 181.5 4.6 327 519-873 103-467 (594)
93 1w5s_A Origin recognition comp 99.5 1.1E-13 3.7E-18 155.0 19.9 296 139-452 22-371 (412)
94 4ay9_X Follicle-stimulating ho 99.5 1.3E-14 4.5E-19 158.2 12.1 193 482-679 17-216 (350)
95 3e6j_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 142.9 15.9 144 499-647 21-167 (229)
96 3rfs_A Internalin B, repeat mo 99.5 6.3E-14 2.2E-18 147.0 16.4 150 494-647 60-213 (272)
97 2ast_B S-phase kinase-associat 99.5 8.1E-15 2.8E-19 159.2 9.6 128 546-675 70-205 (336)
98 2ast_B S-phase kinase-associat 99.5 3.7E-15 1.3E-19 161.9 6.8 131 546-679 47-183 (336)
99 2v9t_B SLIT homolog 2 protein 99.5 5.3E-14 1.8E-18 142.2 14.8 143 500-647 14-160 (220)
100 2fna_A Conserved hypothetical 99.5 3.1E-13 1.1E-17 148.0 21.9 289 138-468 12-356 (357)
101 2v70_A SLIT-2, SLIT homolog 2 99.5 9.7E-14 3.3E-18 140.3 14.6 144 499-647 13-161 (220)
102 4ezg_A Putative uncharacterize 99.5 7.4E-14 2.5E-18 138.6 13.2 145 495-647 42-189 (197)
103 1m9s_A Internalin B; cell inva 99.5 3.8E-14 1.3E-18 164.7 12.2 170 496-679 42-211 (605)
104 2xot_A Amphoterin-induced prot 99.5 4.7E-14 1.6E-18 154.5 12.3 172 500-677 21-201 (361)
105 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 139.1 15.7 142 483-628 28-172 (229)
106 2o6s_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 140.9 11.3 142 501-647 11-156 (208)
107 2xot_A Amphoterin-induced prot 99.5 9.1E-14 3.1E-18 152.2 13.2 163 482-647 26-197 (361)
108 2v9t_B SLIT homolog 2 protein 99.5 2.1E-13 7.3E-18 137.7 14.3 144 482-628 19-165 (220)
109 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.1E-18 148.0 6.9 164 499-677 21-184 (263)
110 2o6s_A Variable lymphocyte rec 99.5 6.9E-13 2.3E-17 133.0 16.1 154 483-647 16-173 (208)
111 1xeu_A Internalin C; cellular 99.5 5.7E-13 2E-17 138.6 15.4 142 495-647 39-180 (263)
112 1h6t_A Internalin B; cell adhe 99.5 6.8E-13 2.3E-17 140.4 16.2 145 493-647 64-208 (291)
113 4glp_A Monocyte differentiatio 99.5 6.5E-14 2.2E-18 150.0 8.4 176 497-679 91-286 (310)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 3.8E-13 1.3E-17 135.9 13.3 143 483-628 20-166 (220)
115 3cvr_A Invasion plasmid antige 99.4 4.5E-13 1.5E-17 153.8 14.5 129 498-647 60-188 (571)
116 2ca6_A RAN GTPase-activating p 99.4 2.9E-14 1E-18 158.0 4.1 189 489-679 24-258 (386)
117 3goz_A Leucine-rich repeat-con 99.4 9.6E-14 3.3E-18 152.2 8.1 174 503-679 4-210 (362)
118 4glp_A Monocyte differentiatio 99.4 1.1E-13 3.7E-18 148.2 7.8 176 494-678 114-307 (310)
119 4ezg_A Putative uncharacterize 99.4 2.7E-13 9.1E-18 134.6 9.5 151 518-678 41-194 (197)
120 1m9s_A Internalin B; cell inva 99.4 4.1E-13 1.4E-17 156.0 12.1 168 499-680 23-190 (605)
121 2ca6_A RAN GTPase-activating p 99.4 3.4E-14 1.1E-18 157.5 2.3 157 518-677 29-228 (386)
122 3goz_A Leucine-rich repeat-con 99.4 9.3E-14 3.2E-18 152.3 5.1 182 494-679 19-239 (362)
123 3cvr_A Invasion plasmid antige 99.4 1.5E-12 5E-17 149.6 13.6 167 486-679 71-244 (571)
124 4b8c_D Glucose-repressible alc 99.4 8E-13 2.8E-17 157.6 9.8 153 497-655 173-331 (727)
125 2ell_A Acidic leucine-rich nuc 99.4 1.2E-12 4.1E-17 126.2 9.3 131 497-632 24-164 (168)
126 2je0_A Acidic leucine-rich nuc 99.4 8.8E-13 3E-17 124.3 7.9 124 521-647 17-148 (149)
127 2ell_A Acidic leucine-rich nuc 99.4 1.6E-12 5.3E-17 125.4 9.7 126 519-647 22-155 (168)
128 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.8E-16 122.1 12.8 119 524-647 13-134 (193)
129 1w8a_A SLIT protein; signaling 99.3 1E-11 3.6E-16 122.4 12.0 121 500-647 11-134 (192)
130 1a9n_A U2A', U2A'; complex (nu 99.3 4.3E-12 1.5E-16 123.3 8.1 126 518-647 16-148 (176)
131 2v1u_A Cell division control p 99.3 2E-10 7E-15 127.0 22.7 291 139-452 19-351 (387)
132 1w8a_A SLIT protein; signaling 99.3 1.6E-11 5.5E-16 121.0 11.9 125 549-678 11-139 (192)
133 2wfh_A SLIT homolog 2 protein 99.3 3E-11 1E-15 119.0 13.3 123 500-628 13-139 (193)
134 2je0_A Acidic leucine-rich nuc 99.3 8.2E-12 2.8E-16 117.6 8.8 122 497-623 17-148 (149)
135 2qby_A CDC6 homolog 1, cell di 99.3 1.9E-10 6.4E-15 127.3 21.2 291 139-452 20-348 (386)
136 1dce_A Protein (RAB geranylger 99.3 3.1E-13 1.1E-17 156.1 -1.9 98 547-647 442-541 (567)
137 4b8c_D Glucose-repressible alc 99.2 4.8E-12 1.6E-16 150.9 7.7 126 504-633 208-334 (727)
138 1dce_A Protein (RAB geranylger 99.2 1.7E-11 5.7E-16 141.6 11.5 137 500-646 426-567 (567)
139 1fnn_A CDC6P, cell division co 99.2 4.5E-10 1.5E-14 124.4 22.4 293 139-453 17-352 (389)
140 3qfl_A MLA10; coiled-coil, (CC 99.2 2E-11 6.7E-16 107.4 8.8 78 6-90 2-79 (115)
141 2o6r_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 115.1 13.3 101 546-647 28-132 (177)
142 1a9n_A U2A', U2A'; complex (nu 99.2 2E-11 6.7E-16 118.6 9.2 134 542-679 15-154 (176)
143 2qby_B CDC6 homolog 3, cell di 99.2 8.7E-10 3E-14 121.8 21.5 288 139-452 20-339 (384)
144 2o6r_A Variable lymphocyte rec 99.2 1.9E-10 6.4E-15 111.8 13.5 127 498-629 8-138 (177)
145 1ds9_A Outer arm dynein; leuci 99.2 4E-13 1.4E-17 133.5 -6.6 125 542-671 44-180 (198)
146 1njg_A DNA polymerase III subu 99.1 6.4E-10 2.2E-14 114.3 13.6 194 139-345 23-230 (250)
147 2chg_A Replication factor C sm 99.1 1.9E-09 6.5E-14 109.0 16.8 183 139-343 17-204 (226)
148 1ds9_A Outer arm dynein; leuci 99.1 1.1E-11 3.6E-16 123.1 -1.5 144 499-647 25-182 (198)
149 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.7E-14 105.0 11.3 96 549-647 15-113 (174)
150 3sb4_A Hypothetical leucine ri 99.0 4.4E-10 1.5E-14 121.1 8.6 178 497-680 49-312 (329)
151 3g39_A Variable lymphocyte rec 99.0 1.5E-09 5E-14 104.4 11.3 97 548-647 11-110 (170)
152 2r9u_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 105.1 10.0 104 524-632 15-122 (174)
153 3g39_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 101.8 11.2 103 523-630 11-117 (170)
154 1hqc_A RUVB; extended AAA-ATPa 98.8 3.8E-08 1.3E-12 105.7 16.0 270 139-451 12-324 (324)
155 1sxj_B Activator 1 37 kDa subu 98.8 1.7E-08 5.9E-13 108.3 13.1 184 139-343 21-210 (323)
156 3sb4_A Hypothetical leucine ri 98.8 8.3E-09 2.8E-13 111.1 9.9 167 497-670 101-326 (329)
157 4fdw_A Leucine rich hypothetic 98.8 3E-08 1E-12 109.1 13.8 154 509-675 124-281 (401)
158 3te6_A Regulatory protein SIR3 98.7 3.6E-07 1.2E-11 95.7 17.2 169 140-311 21-212 (318)
159 1iqp_A RFCS; clamp loader, ext 98.7 6.1E-08 2.1E-12 104.2 10.9 185 139-345 25-214 (327)
160 2ifg_A High affinity nerve gro 98.7 4.8E-08 1.7E-12 106.0 9.9 98 527-627 14-115 (347)
161 2ifg_A High affinity nerve gro 98.6 7.7E-08 2.6E-12 104.4 10.0 99 502-605 13-116 (347)
162 3un9_A NLR family member X1; l 98.6 5.2E-09 1.8E-13 114.1 -1.5 166 497-665 72-264 (372)
163 4fdw_A Leucine rich hypothetic 98.6 1.8E-07 6.1E-12 103.0 10.7 170 497-677 180-357 (401)
164 3un9_A NLR family member X1; l 98.5 1.1E-08 3.6E-13 111.7 0.7 157 520-680 71-254 (372)
165 2chq_A Replication factor C sm 98.5 7.9E-07 2.7E-11 95.1 14.3 180 138-342 16-203 (319)
166 4fs7_A Uncharacterized protein 98.5 1.9E-06 6.4E-11 95.1 16.1 132 508-647 58-193 (394)
167 1jbk_A CLPB protein; beta barr 98.4 1.1E-06 3.8E-11 86.0 10.2 151 139-306 22-194 (195)
168 1jr3_A DNA polymerase III subu 98.4 2.6E-06 8.9E-11 93.3 13.6 192 139-343 16-221 (373)
169 1sxj_D Activator 1 41 kDa subu 98.3 2.9E-06 1E-10 92.0 11.8 192 139-342 37-234 (353)
170 1d2n_A N-ethylmaleimide-sensit 98.2 3.8E-05 1.3E-09 79.7 18.9 177 159-365 61-264 (272)
171 2z4s_A Chromosomal replication 98.2 1.6E-05 5.4E-10 88.4 14.6 182 140-341 106-304 (440)
172 3bos_A Putative DNA replicatio 98.2 9.6E-07 3.3E-11 90.1 4.3 172 140-343 29-217 (242)
173 3h4m_A Proteasome-activating n 98.2 8.7E-06 3E-10 85.3 11.7 176 138-341 16-229 (285)
174 1sxj_A Activator 1 95 kDa subu 98.1 1.3E-05 4.5E-10 91.2 13.2 187 139-342 39-252 (516)
175 3pvs_A Replication-associated 98.1 3.4E-05 1.2E-09 85.6 15.5 175 139-342 26-214 (447)
176 3e4g_A ATP synthase subunit S, 98.1 2E-06 7E-11 81.2 4.6 39 837-876 115-153 (176)
177 4fs7_A Uncharacterized protein 98.1 3.6E-05 1.2E-09 84.7 14.7 142 497-647 71-216 (394)
178 1sxj_E Activator 1 40 kDa subu 98.0 2E-05 6.9E-10 85.4 12.2 194 139-343 14-237 (354)
179 3syl_A Protein CBBX; photosynt 98.0 1.4E-05 4.8E-10 84.8 10.4 133 161-312 66-219 (309)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.0 0.00027 9.2E-09 72.7 19.6 177 139-341 6-220 (262)
181 3d8b_A Fidgetin-like protein 1 98.0 0.00013 4.5E-09 78.8 17.8 179 138-343 83-295 (357)
182 3e4g_A ATP synthase subunit S, 98.0 4E-06 1.4E-10 79.1 4.9 91 736-852 61-155 (176)
183 3pfi_A Holliday junction ATP-d 98.0 9.4E-05 3.2E-09 79.5 16.5 169 138-342 28-226 (338)
184 3uk6_A RUVB-like 2; hexameric 98.0 6.6E-05 2.2E-09 81.8 15.4 193 139-341 44-301 (368)
185 3u61_B DNA polymerase accessor 98.0 7.2E-05 2.4E-09 79.9 15.0 175 139-341 26-214 (324)
186 1a5t_A Delta prime, HOLB; zinc 97.9 9E-05 3.1E-09 79.3 14.9 165 147-342 8-204 (334)
187 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00024 8.1E-09 75.4 17.9 180 138-343 11-223 (322)
188 3eie_A Vacuolar protein sortin 97.9 9.2E-05 3.1E-09 78.8 14.4 178 138-342 17-227 (322)
189 3b9p_A CG5977-PA, isoform A; A 97.9 0.00042 1.4E-08 72.8 19.4 177 138-342 20-232 (297)
190 2p65_A Hypothetical protein PF 97.9 3.8E-05 1.3E-09 74.4 9.9 46 139-186 22-67 (187)
191 1sxj_C Activator 1 40 kDa subu 97.9 8.1E-05 2.8E-09 80.0 13.2 180 139-341 25-210 (340)
192 3vfd_A Spastin; ATPase, microt 97.9 0.00022 7.6E-09 78.0 16.8 178 138-342 114-325 (389)
193 2ra8_A Uncharacterized protein 97.9 1.5E-05 5.1E-10 85.9 7.1 134 541-678 167-320 (362)
194 4gt6_A Cell surface protein; l 97.8 0.00022 7.6E-09 78.3 15.9 132 509-647 51-190 (394)
195 1l8q_A Chromosomal replication 97.8 8.1E-05 2.8E-09 79.4 11.4 175 140-339 12-204 (324)
196 2qp9_X Vacuolar protein sortin 97.7 0.00017 5.9E-09 77.7 12.8 178 138-342 50-260 (355)
197 2ra8_A Uncharacterized protein 97.7 2.9E-05 1E-09 83.6 5.8 139 518-662 169-329 (362)
198 2zan_A Vacuolar protein sortin 97.7 0.00059 2E-08 75.8 16.3 179 138-342 133-344 (444)
199 3pxg_A Negative regulator of g 97.6 0.00038 1.3E-08 78.0 13.9 147 140-311 181-339 (468)
200 3cf0_A Transitional endoplasmi 97.6 0.00078 2.7E-08 70.7 15.4 173 138-338 14-223 (301)
201 1qvr_A CLPB protein; coiled co 97.5 0.00028 9.6E-09 85.5 11.5 153 140-310 171-345 (854)
202 1io0_A Tropomodulin; LRR prote 97.5 5.5E-05 1.9E-09 73.2 4.1 105 542-647 32-159 (185)
203 3ec2_A DNA replication protein 97.5 8.2E-05 2.8E-09 71.7 5.1 116 147-281 20-143 (180)
204 3n70_A Transport activator; si 97.5 3.6E-05 1.2E-09 71.2 2.2 44 140-186 2-48 (145)
205 2gno_A DNA polymerase III, gam 97.4 0.00046 1.6E-08 72.2 10.3 145 147-310 3-152 (305)
206 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0015 5.3E-08 78.2 16.2 153 140-310 187-362 (758)
207 1in4_A RUVB, holliday junction 97.4 0.002 6.9E-08 68.7 15.3 48 292-342 175-222 (334)
208 1io0_A Tropomodulin; LRR prote 97.3 7.6E-05 2.6E-09 72.2 2.9 109 518-627 33-163 (185)
209 4b4t_J 26S protease regulatory 97.3 0.0035 1.2E-07 67.2 15.8 149 162-336 182-354 (405)
210 3rw6_A Nuclear RNA export fact 97.3 0.0003 1E-08 71.7 6.8 78 543-621 167-257 (267)
211 3rw6_A Nuclear RNA export fact 97.3 0.00017 5.8E-09 73.5 5.0 78 567-646 168-258 (267)
212 4b4t_L 26S protease subunit RP 97.3 0.0045 1.5E-07 67.5 16.2 149 162-336 215-387 (437)
213 4b4t_H 26S protease regulatory 97.3 0.0028 9.5E-08 68.9 14.3 169 140-336 210-415 (467)
214 3pxi_A Negative regulator of g 97.3 0.0014 4.8E-08 78.4 13.4 147 140-311 181-339 (758)
215 4b4t_M 26S protease regulatory 97.2 0.0024 8.2E-08 69.6 13.7 169 140-336 182-387 (434)
216 4b4t_I 26S protease regulatory 97.2 0.0053 1.8E-07 66.0 16.0 149 162-336 216-388 (437)
217 4b4t_K 26S protease regulatory 97.2 0.005 1.7E-07 67.0 15.1 91 139-253 172-275 (428)
218 3hu3_A Transitional endoplasmi 97.1 0.006 2.1E-07 68.2 15.7 173 140-340 205-412 (489)
219 2w58_A DNAI, primosome compone 97.1 0.00088 3E-08 65.7 7.5 113 148-280 36-158 (202)
220 1ofh_A ATP-dependent HSL prote 97.1 0.0023 8E-08 67.4 11.3 45 140-186 16-74 (310)
221 4fcw_A Chaperone protein CLPB; 97.0 0.00078 2.7E-08 71.2 7.2 45 140-186 18-71 (311)
222 4gt6_A Cell surface protein; l 97.0 0.0044 1.5E-07 67.8 12.6 100 498-601 65-169 (394)
223 2ce7_A Cell division protein F 96.8 0.0069 2.4E-07 67.1 12.4 172 139-336 16-221 (476)
224 1lv7_A FTSH; alpha/beta domain 96.8 0.022 7.6E-07 58.0 15.2 49 138-186 11-69 (257)
225 2r62_A Cell division protease 96.7 0.0006 2E-08 70.4 2.9 48 139-186 11-68 (268)
226 4h09_A Hypothetical leucine ri 96.6 0.0067 2.3E-07 66.0 10.8 130 512-647 208-341 (379)
227 2cvh_A DNA repair and recombin 96.6 0.0074 2.5E-07 59.8 9.8 44 162-211 20-63 (220)
228 3pxi_A Negative regulator of g 96.6 0.0013 4.3E-08 78.8 4.6 59 140-203 492-559 (758)
229 1ojl_A Transcriptional regulat 96.5 0.002 6.9E-08 67.5 5.3 45 140-186 3-49 (304)
230 1n0w_A DNA repair protein RAD5 96.3 0.016 5.3E-07 58.4 10.7 93 162-255 24-131 (243)
231 4h09_A Hypothetical leucine ri 96.3 0.014 4.8E-07 63.4 10.9 136 497-639 217-356 (379)
232 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0028 9.4E-08 65.6 4.3 69 162-254 123-193 (331)
233 2z43_A DNA repair and recombin 96.2 0.018 6.3E-07 60.8 10.9 92 162-254 107-214 (324)
234 1v5w_A DMC1, meiotic recombina 96.2 0.026 9.1E-07 60.0 12.0 57 162-219 122-181 (343)
235 3m6a_A ATP-dependent protease 96.2 0.027 9.3E-07 64.0 12.7 45 140-186 82-132 (543)
236 2i1q_A DNA repair and recombin 96.2 0.018 6.3E-07 60.8 10.6 58 162-220 98-168 (322)
237 2kjq_A DNAA-related protein; s 96.1 0.0069 2.4E-07 55.8 6.0 40 161-203 35-74 (149)
238 3hr8_A Protein RECA; alpha and 96.1 0.013 4.5E-07 62.1 8.9 85 162-254 61-150 (356)
239 3io5_A Recombination and repai 96.1 0.02 7E-07 58.9 9.7 86 164-255 30-123 (333)
240 3c8u_A Fructokinase; YP_612366 96.0 0.0058 2E-07 60.1 5.3 41 147-187 5-47 (208)
241 3ice_A Transcription terminati 95.7 0.011 3.7E-07 62.4 6.0 52 153-205 164-216 (422)
242 3cf2_A TER ATPase, transitiona 95.7 0.02 6.9E-07 67.3 8.8 149 162-336 238-407 (806)
243 1r6b_X CLPA protein; AAA+, N-t 95.7 0.013 4.5E-07 70.1 7.5 45 140-186 459-512 (758)
244 3t15_A Ribulose bisphosphate c 95.7 0.0076 2.6E-07 62.8 4.7 25 162-186 36-60 (293)
245 2dhr_A FTSH; AAA+ protein, hex 95.7 0.064 2.2E-06 59.8 12.3 48 139-186 31-88 (499)
246 2x8a_A Nuclear valosin-contain 95.6 0.031 1.1E-06 57.4 9.1 124 165-310 47-191 (274)
247 2zr9_A Protein RECA, recombina 95.6 0.024 8.3E-07 60.3 8.6 84 162-254 61-150 (349)
248 2c9o_A RUVB-like 1; hexameric 95.6 0.025 8.4E-07 63.0 8.9 46 139-186 37-87 (456)
249 1xp8_A RECA protein, recombina 95.4 0.032 1.1E-06 59.6 8.7 85 162-254 74-163 (366)
250 1qvr_A CLPB protein; coiled co 95.4 0.018 6.3E-07 69.6 7.5 45 140-186 559-612 (854)
251 1ypw_A Transitional endoplasmi 95.4 0.043 1.5E-06 65.5 10.5 127 162-311 238-386 (806)
252 3lda_A DNA repair protein RAD5 95.4 0.072 2.4E-06 57.6 11.3 92 162-254 178-284 (400)
253 4a74_A DNA repair and recombin 95.4 0.069 2.4E-06 53.1 10.6 46 162-207 25-73 (231)
254 1u94_A RECA protein, recombina 95.3 0.032 1.1E-06 59.4 8.1 84 162-254 63-152 (356)
255 1jr3_D DNA polymerase III, del 95.3 0.1 3.4E-06 55.6 12.0 160 156-341 12-183 (343)
256 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.04 1.4E-06 55.0 8.2 39 162-203 23-61 (235)
257 2qgz_A Helicase loader, putati 95.2 0.026 9E-07 59.0 7.0 40 148-187 135-177 (308)
258 1rz3_A Hypothetical protein rb 95.0 0.024 8.1E-07 55.3 5.4 40 147-186 4-46 (201)
259 1odf_A YGR205W, hypothetical 3 94.9 0.092 3.1E-06 54.2 9.8 56 160-215 29-84 (290)
260 3kb2_A SPBC2 prophage-derived 94.8 0.017 5.8E-07 54.6 3.7 24 163-186 2-25 (173)
261 1qhx_A CPT, protein (chloramph 94.7 0.016 5.6E-07 55.1 3.5 24 163-186 4-27 (178)
262 3dm5_A SRP54, signal recogniti 94.7 0.17 5.9E-06 55.0 11.7 27 161-187 99-125 (443)
263 3rfe_A Platelet glycoprotein I 94.6 0.051 1.8E-06 48.5 6.1 34 523-557 33-66 (130)
264 1pzn_A RAD51, DNA repair and r 94.6 0.12 4.3E-06 54.9 10.2 48 162-209 131-181 (349)
265 2ck3_D ATP synthase subunit be 94.5 0.14 4.7E-06 55.9 10.3 91 162-254 153-264 (482)
266 3vaa_A Shikimate kinase, SK; s 94.5 0.02 7E-07 55.6 3.6 26 161-186 24-49 (199)
267 3co5_A Putative two-component 94.5 0.0069 2.4E-07 55.4 0.1 44 140-186 5-51 (143)
268 3lw7_A Adenylate kinase relate 94.5 0.018 6.1E-07 54.6 3.0 20 163-182 2-21 (179)
269 1zp6_A Hypothetical protein AT 94.4 0.019 6.4E-07 55.4 3.1 24 162-185 9-32 (191)
270 3uie_A Adenylyl-sulfate kinase 94.4 0.024 8.3E-07 55.1 4.0 29 158-186 21-49 (200)
271 1kag_A SKI, shikimate kinase I 94.4 0.019 6.4E-07 54.3 2.9 24 163-186 5-28 (173)
272 3e70_C DPA, signal recognition 94.3 0.34 1.2E-05 50.8 12.8 57 160-219 127-184 (328)
273 3trf_A Shikimate kinase, SK; a 94.3 0.024 8.3E-07 54.3 3.7 25 162-186 5-29 (185)
274 1kgd_A CASK, peripheral plasma 94.3 0.022 7.6E-07 54.4 3.4 25 162-186 5-29 (180)
275 2px0_A Flagellar biosynthesis 94.3 0.1 3.5E-06 54.1 8.6 39 161-201 104-142 (296)
276 1sky_E F1-ATPase, F1-ATP synth 94.3 0.11 3.7E-06 56.8 9.1 89 163-253 152-255 (473)
277 4eun_A Thermoresistant glucoki 94.3 0.025 8.5E-07 55.1 3.8 27 160-186 27-53 (200)
278 1ly1_A Polynucleotide kinase; 94.3 0.024 8.2E-07 54.0 3.5 22 163-184 3-24 (181)
279 3kl4_A SRP54, signal recogniti 94.3 0.19 6.6E-06 54.6 11.0 26 162-187 97-122 (433)
280 3t61_A Gluconokinase; PSI-biol 94.1 0.023 7.9E-07 55.4 3.0 25 162-186 18-42 (202)
281 1nks_A Adenylate kinase; therm 94.1 0.03 1E-06 53.9 3.8 24 163-186 2-25 (194)
282 2hf9_A Probable hydrogenase ni 94.0 0.042 1.4E-06 54.6 4.8 37 150-186 26-62 (226)
283 2ze6_A Isopentenyl transferase 94.0 0.032 1.1E-06 56.6 3.8 24 163-186 2-25 (253)
284 1knq_A Gluconate kinase; ALFA/ 94.0 0.033 1.1E-06 52.8 3.7 25 162-186 8-32 (175)
285 1g5t_A COB(I)alamin adenosyltr 93.9 0.063 2.2E-06 51.2 5.6 117 162-281 28-163 (196)
286 2dr3_A UPF0273 protein PH0284; 93.9 0.15 5.3E-06 51.0 9.0 39 162-203 23-61 (247)
287 3tr0_A Guanylate kinase, GMP k 93.9 0.029 1E-06 54.7 3.4 25 162-186 7-31 (205)
288 1ye8_A Protein THEP1, hypothet 93.9 0.031 1.1E-06 53.1 3.4 23 164-186 2-24 (178)
289 3bh0_A DNAB-like replicative h 93.9 0.22 7.7E-06 52.1 10.3 51 162-217 68-118 (315)
290 1kht_A Adenylate kinase; phosp 93.9 0.033 1.1E-06 53.6 3.6 24 163-186 4-27 (192)
291 2wsm_A Hydrogenase expression/ 93.9 0.037 1.3E-06 54.7 4.1 39 148-186 16-54 (221)
292 3iij_A Coilin-interacting nucl 93.9 0.029 9.8E-07 53.5 3.1 25 162-186 11-35 (180)
293 1via_A Shikimate kinase; struc 93.8 0.029 9.8E-07 53.2 3.1 24 163-186 5-28 (175)
294 2bdt_A BH3686; alpha-beta prot 93.8 0.034 1.2E-06 53.5 3.6 22 163-184 3-24 (189)
295 2rhm_A Putative kinase; P-loop 93.8 0.037 1.3E-06 53.3 3.8 25 162-186 5-29 (193)
296 3a00_A Guanylate kinase, GMP k 93.8 0.028 9.5E-07 54.0 2.8 24 163-186 2-25 (186)
297 1fx0_B ATP synthase beta chain 93.8 0.16 5.4E-06 55.6 8.9 53 162-216 165-218 (498)
298 2yvu_A Probable adenylyl-sulfa 93.7 0.044 1.5E-06 52.5 4.2 27 161-187 12-38 (186)
299 1zuh_A Shikimate kinase; alpha 93.7 0.038 1.3E-06 51.9 3.7 25 162-186 7-31 (168)
300 2jaq_A Deoxyguanosine kinase; 93.7 0.037 1.3E-06 53.9 3.6 23 164-186 2-24 (205)
301 3tau_A Guanylate kinase, GMP k 93.6 0.04 1.4E-06 54.0 3.8 26 161-186 7-32 (208)
302 3cmu_A Protein RECA, recombina 93.6 0.13 4.3E-06 66.2 9.1 84 162-253 1427-1515(2050)
303 3asz_A Uridine kinase; cytidin 93.6 0.038 1.3E-06 54.2 3.6 26 161-186 5-30 (211)
304 1vma_A Cell division protein F 93.6 0.27 9.4E-06 50.9 10.3 38 161-201 103-140 (306)
305 2if2_A Dephospho-COA kinase; a 93.6 0.035 1.2E-06 54.1 3.3 22 163-184 2-23 (204)
306 1y63_A LMAJ004144AAA protein; 93.6 0.046 1.6E-06 52.3 4.0 25 161-185 9-33 (184)
307 1cke_A CK, MSSA, protein (cyti 93.6 0.039 1.3E-06 54.8 3.7 24 163-186 6-29 (227)
308 2iyv_A Shikimate kinase, SK; t 93.6 0.032 1.1E-06 53.4 2.9 24 163-186 3-26 (184)
309 1ls1_A Signal recognition part 93.6 0.17 5.7E-06 52.4 8.5 87 162-252 98-189 (295)
310 2ga8_A Hypothetical 39.9 kDa p 93.6 0.074 2.5E-06 55.8 5.7 40 147-186 5-48 (359)
311 2xxa_A Signal recognition part 93.6 0.26 9E-06 53.8 10.4 40 161-202 99-138 (433)
312 3umf_A Adenylate kinase; rossm 93.5 0.046 1.6E-06 53.6 3.9 26 161-186 28-53 (217)
313 4gp7_A Metallophosphoesterase; 93.5 0.031 1.1E-06 52.8 2.7 22 162-183 9-30 (171)
314 1tev_A UMP-CMP kinase; ploop, 93.5 0.044 1.5E-06 52.8 3.8 25 162-186 3-27 (196)
315 3rfe_A Platelet glycoprotein I 93.5 0.11 3.9E-06 46.2 6.2 51 595-647 11-63 (130)
316 2j41_A Guanylate kinase; GMP, 93.5 0.039 1.3E-06 53.9 3.4 25 162-186 6-30 (207)
317 2bjv_A PSP operon transcriptio 93.5 0.038 1.3E-06 56.5 3.4 45 140-186 7-53 (265)
318 2qor_A Guanylate kinase; phosp 93.4 0.035 1.2E-06 54.2 2.9 25 162-186 12-36 (204)
319 1gvn_B Zeta; postsegregational 93.4 0.066 2.3E-06 55.3 5.2 26 161-186 32-57 (287)
320 3cm0_A Adenylate kinase; ATP-b 93.4 0.047 1.6E-06 52.3 3.8 25 162-186 4-28 (186)
321 2c95_A Adenylate kinase 1; tra 93.4 0.044 1.5E-06 52.9 3.6 25 162-186 9-33 (196)
322 1uf9_A TT1252 protein; P-loop, 93.4 0.045 1.5E-06 53.2 3.7 25 161-185 7-31 (203)
323 1ukz_A Uridylate kinase; trans 93.4 0.052 1.8E-06 52.8 4.1 26 161-186 14-39 (203)
324 2bwj_A Adenylate kinase 5; pho 93.4 0.045 1.5E-06 53.0 3.6 25 162-186 12-36 (199)
325 1lvg_A Guanylate kinase, GMP k 93.3 0.036 1.2E-06 53.8 2.8 25 162-186 4-28 (198)
326 1e6c_A Shikimate kinase; phosp 93.3 0.04 1.4E-06 52.0 3.1 24 163-186 3-26 (173)
327 3hws_A ATP-dependent CLP prote 93.3 0.071 2.4E-06 57.4 5.4 45 140-186 16-75 (363)
328 1xjc_A MOBB protein homolog; s 93.3 0.052 1.8E-06 50.7 3.7 27 161-187 3-29 (169)
329 1j8m_F SRP54, signal recogniti 93.3 0.2 6.9E-06 51.8 8.5 88 162-252 98-189 (297)
330 2r44_A Uncharacterized protein 93.2 0.051 1.7E-06 57.6 4.1 43 140-186 28-70 (331)
331 2bbw_A Adenylate kinase 4, AK4 93.2 0.048 1.6E-06 55.0 3.7 25 162-186 27-51 (246)
332 1htw_A HI0065; nucleotide-bind 93.2 0.051 1.8E-06 50.4 3.6 27 160-186 31-57 (158)
333 1jjv_A Dephospho-COA kinase; P 93.2 0.043 1.5E-06 53.6 3.2 22 163-184 3-24 (206)
334 2plr_A DTMP kinase, probable t 93.2 0.052 1.8E-06 53.2 3.8 24 163-186 5-28 (213)
335 1qf9_A UMP/CMP kinase, protein 93.2 0.054 1.8E-06 52.1 3.8 25 162-186 6-30 (194)
336 2qt1_A Nicotinamide riboside k 93.1 0.048 1.6E-06 53.3 3.4 25 162-186 21-45 (207)
337 3l0o_A Transcription terminati 93.1 0.031 1E-06 58.9 2.0 52 152-204 164-216 (427)
338 4a1f_A DNAB helicase, replicat 93.1 0.43 1.5E-05 50.1 10.9 51 162-217 46-96 (338)
339 2p5t_B PEZT; postsegregational 93.1 0.071 2.4E-06 54.0 4.8 26 161-186 31-56 (253)
340 3ney_A 55 kDa erythrocyte memb 93.1 0.053 1.8E-06 52.1 3.5 26 161-186 18-43 (197)
341 1znw_A Guanylate kinase, GMP k 93.1 0.049 1.7E-06 53.2 3.4 26 161-186 19-44 (207)
342 1g8p_A Magnesium-chelatase 38 93.1 0.052 1.8E-06 58.0 3.9 46 139-186 24-69 (350)
343 2pt5_A Shikimate kinase, SK; a 93.1 0.056 1.9E-06 50.7 3.6 23 164-186 2-24 (168)
344 2j37_W Signal recognition part 93.1 0.67 2.3E-05 51.5 12.8 27 161-187 100-126 (504)
345 2pbr_A DTMP kinase, thymidylat 93.1 0.055 1.9E-06 52.1 3.7 23 164-186 2-24 (195)
346 2vli_A Antibiotic resistance p 93.0 0.041 1.4E-06 52.5 2.7 25 162-186 5-29 (183)
347 2grj_A Dephospho-COA kinase; T 93.0 0.058 2E-06 51.9 3.7 26 161-186 11-36 (192)
348 2cdn_A Adenylate kinase; phosp 93.0 0.057 1.9E-06 52.5 3.7 25 162-186 20-44 (201)
349 3aez_A Pantothenate kinase; tr 93.0 0.056 1.9E-06 56.5 3.8 42 160-202 88-129 (312)
350 2ffh_A Protein (FFH); SRP54, s 93.0 0.46 1.6E-05 51.5 11.1 26 162-187 98-123 (425)
351 2jeo_A Uridine-cytidine kinase 92.9 0.058 2E-06 54.4 3.8 26 161-186 24-49 (245)
352 1tue_A Replication protein E1; 92.9 0.1 3.5E-06 50.0 5.1 37 150-186 45-82 (212)
353 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.059 2E-06 54.8 3.7 25 162-186 4-28 (260)
354 1um8_A ATP-dependent CLP prote 92.8 0.089 3.1E-06 56.9 5.4 24 163-186 73-96 (376)
355 1z6g_A Guanylate kinase; struc 92.7 0.049 1.7E-06 53.8 2.8 26 161-186 22-47 (218)
356 1ex7_A Guanylate kinase; subst 92.7 0.054 1.8E-06 51.7 2.9 24 163-186 2-25 (186)
357 1gtv_A TMK, thymidylate kinase 92.7 0.04 1.4E-06 54.1 2.1 24 163-186 1-24 (214)
358 2wwf_A Thymidilate kinase, put 92.7 0.064 2.2E-06 52.5 3.6 32 162-195 10-41 (212)
359 4e22_A Cytidylate kinase; P-lo 92.7 0.062 2.1E-06 54.4 3.5 26 161-186 26-51 (252)
360 3fb4_A Adenylate kinase; psych 92.6 0.067 2.3E-06 52.6 3.7 23 164-186 2-24 (216)
361 1aky_A Adenylate kinase; ATP:A 92.6 0.069 2.4E-06 52.7 3.8 25 162-186 4-28 (220)
362 3fwy_A Light-independent proto 92.6 0.062 2.1E-06 56.1 3.5 40 160-202 46-85 (314)
363 1rj9_A FTSY, signal recognitio 92.6 0.084 2.9E-06 54.8 4.5 27 161-187 101-127 (304)
364 1nn5_A Similar to deoxythymidy 92.5 0.07 2.4E-06 52.4 3.6 25 162-186 9-33 (215)
365 2f1r_A Molybdopterin-guanine d 92.5 0.053 1.8E-06 51.0 2.6 25 163-187 3-27 (171)
366 1s96_A Guanylate kinase, GMP k 92.5 0.066 2.3E-06 52.7 3.4 25 162-186 16-40 (219)
367 1zd8_A GTP:AMP phosphotransfer 92.4 0.068 2.3E-06 53.1 3.5 25 162-186 7-31 (227)
368 2i3b_A HCR-ntpase, human cance 92.4 0.064 2.2E-06 51.4 3.1 25 163-187 2-26 (189)
369 2z0h_A DTMP kinase, thymidylat 92.4 0.076 2.6E-06 51.2 3.7 23 164-186 2-24 (197)
370 1uj2_A Uridine-cytidine kinase 92.4 0.078 2.7E-06 53.6 3.8 26 161-186 21-46 (252)
371 3dl0_A Adenylate kinase; phosp 92.2 0.078 2.7E-06 52.1 3.5 23 164-186 2-24 (216)
372 2pez_A Bifunctional 3'-phospho 92.2 0.081 2.8E-06 50.2 3.5 25 162-186 5-29 (179)
373 3b9q_A Chloroplast SRP recepto 92.2 0.11 3.6E-06 54.0 4.6 26 162-187 100-125 (302)
374 2yhs_A FTSY, cell division pro 92.2 0.33 1.1E-05 53.4 8.6 26 162-187 293-318 (503)
375 3sr0_A Adenylate kinase; phosp 92.1 0.088 3E-06 51.2 3.7 23 164-186 2-24 (206)
376 1m7g_A Adenylylsulfate kinase; 92.1 0.09 3.1E-06 51.5 3.8 27 160-186 23-49 (211)
377 1ixz_A ATP-dependent metallopr 92.1 0.074 2.5E-06 53.9 3.3 22 165-186 52-73 (254)
378 1zak_A Adenylate kinase; ATP:A 92.1 0.076 2.6E-06 52.5 3.3 25 162-186 5-29 (222)
379 2v54_A DTMP kinase, thymidylat 92.1 0.08 2.7E-06 51.4 3.4 25 162-186 4-28 (204)
380 3tlx_A Adenylate kinase 2; str 92.0 0.098 3.3E-06 52.6 4.0 26 161-186 28-53 (243)
381 2onk_A Molybdate/tungstate ABC 92.0 0.083 2.8E-06 52.8 3.4 26 160-186 23-48 (240)
382 2q6t_A DNAB replication FORK h 92.0 0.64 2.2E-05 51.2 11.0 52 162-217 200-251 (444)
383 3nbx_X ATPase RAVA; AAA+ ATPas 92.0 0.086 2.9E-06 58.8 3.8 43 140-186 23-65 (500)
384 3nwj_A ATSK2; P loop, shikimat 91.9 0.078 2.7E-06 53.3 3.1 25 162-186 48-72 (250)
385 2ehv_A Hypothetical protein PH 91.9 0.08 2.7E-06 53.4 3.2 24 162-185 30-53 (251)
386 3r20_A Cytidylate kinase; stru 91.8 0.098 3.3E-06 51.8 3.7 25 162-186 9-33 (233)
387 3d3q_A TRNA delta(2)-isopenten 91.8 0.095 3.2E-06 54.9 3.7 24 163-186 8-31 (340)
388 3tqc_A Pantothenate kinase; bi 91.8 0.13 4.4E-06 53.7 4.6 26 161-186 91-116 (321)
389 3ake_A Cytidylate kinase; CMP 91.8 0.1 3.4E-06 50.9 3.7 24 163-186 3-26 (208)
390 1vht_A Dephospho-COA kinase; s 91.7 0.095 3.2E-06 51.6 3.5 23 162-184 4-26 (218)
391 3lnc_A Guanylate kinase, GMP k 91.7 0.061 2.1E-06 53.6 2.1 25 162-186 27-52 (231)
392 3vr4_D V-type sodium ATPase su 91.7 0.19 6.4E-06 54.4 5.9 89 163-254 152-259 (465)
393 1np6_A Molybdopterin-guanine d 91.7 0.1 3.6E-06 49.1 3.5 25 162-186 6-30 (174)
394 2pcj_A ABC transporter, lipopr 91.6 0.075 2.6E-06 52.6 2.6 25 162-186 30-54 (224)
395 1sq5_A Pantothenate kinase; P- 91.6 0.1 3.5E-06 54.6 3.7 26 161-186 79-104 (308)
396 3tif_A Uncharacterized ABC tra 91.6 0.078 2.7E-06 52.9 2.7 25 162-186 31-55 (235)
397 3b85_A Phosphate starvation-in 91.5 0.078 2.7E-06 51.7 2.5 31 162-193 22-52 (208)
398 1e4v_A Adenylate kinase; trans 91.5 0.11 3.7E-06 51.1 3.6 23 164-186 2-24 (214)
399 3be4_A Adenylate kinase; malar 91.5 0.11 3.7E-06 51.2 3.6 24 163-186 6-29 (217)
400 3p32_A Probable GTPase RV1496/ 91.5 0.2 6.9E-06 53.5 6.0 36 151-186 66-103 (355)
401 2f6r_A COA synthase, bifunctio 91.5 0.11 3.8E-06 53.4 3.8 24 161-184 74-97 (281)
402 1cr0_A DNA primase/helicase; R 91.5 0.31 1.1E-05 50.5 7.3 50 162-215 35-84 (296)
403 2xb4_A Adenylate kinase; ATP-b 91.4 0.11 3.8E-06 51.3 3.6 23 164-186 2-24 (223)
404 2b8t_A Thymidine kinase; deoxy 91.3 0.057 2E-06 53.1 1.4 114 161-283 11-128 (223)
405 2og2_A Putative signal recogni 91.3 0.15 5E-06 54.2 4.6 26 162-187 157-182 (359)
406 1g41_A Heat shock protein HSLU 91.3 0.11 3.8E-06 56.6 3.7 45 140-186 16-74 (444)
407 1iy2_A ATP-dependent metallopr 91.3 0.1 3.5E-06 53.7 3.3 22 165-186 76-97 (278)
408 2cbz_A Multidrug resistance-as 91.2 0.091 3.1E-06 52.5 2.7 25 162-186 31-55 (237)
409 3crm_A TRNA delta(2)-isopenten 91.2 0.12 4.1E-06 53.8 3.7 24 163-186 6-29 (323)
410 1ak2_A Adenylate kinase isoenz 91.2 0.12 4.1E-06 51.5 3.7 25 162-186 16-40 (233)
411 3gfo_A Cobalt import ATP-bindi 91.1 0.091 3.1E-06 53.7 2.7 25 162-186 34-58 (275)
412 2d2e_A SUFC protein; ABC-ATPas 91.1 0.11 3.7E-06 52.4 3.2 24 162-185 29-52 (250)
413 1q57_A DNA primase/helicase; d 91.1 0.82 2.8E-05 51.4 10.8 52 162-217 242-293 (503)
414 2zts_A Putative uncharacterize 91.0 0.26 8.9E-06 49.5 6.1 40 162-203 30-69 (251)
415 3cf2_A TER ATPase, transitiona 91.0 0.46 1.6E-05 55.9 8.8 71 162-254 511-581 (806)
416 1b0u_A Histidine permease; ABC 91.0 0.095 3.3E-06 53.2 2.7 25 162-186 32-56 (262)
417 1a7j_A Phosphoribulokinase; tr 91.0 0.078 2.7E-06 54.8 2.0 26 161-186 4-29 (290)
418 1zu4_A FTSY; GTPase, signal re 90.9 0.18 6E-06 52.8 4.7 27 161-187 104-130 (320)
419 1ji0_A ABC transporter; ATP bi 90.9 0.099 3.4E-06 52.3 2.7 25 162-186 32-56 (240)
420 1sgw_A Putative ABC transporte 90.9 0.084 2.9E-06 51.7 2.1 25 162-186 35-59 (214)
421 1oix_A RAS-related protein RAB 90.9 0.12 4.2E-06 49.5 3.3 25 162-186 29-53 (191)
422 3cmu_A Protein RECA, recombina 90.9 0.46 1.6E-05 61.2 9.1 85 162-254 383-472 (2050)
423 2olj_A Amino acid ABC transpor 90.9 0.1 3.4E-06 53.0 2.7 26 161-186 49-74 (263)
424 4g1u_C Hemin import ATP-bindin 90.9 0.1 3.4E-06 53.2 2.7 25 162-186 37-61 (266)
425 2zu0_C Probable ATP-dependent 90.9 0.12 4E-06 52.7 3.2 24 162-185 46-69 (267)
426 2pze_A Cystic fibrosis transme 90.8 0.1 3.5E-06 51.8 2.7 25 162-186 34-58 (229)
427 3mfy_A V-type ATP synthase alp 90.8 0.55 1.9E-05 51.9 8.5 48 162-214 227-275 (588)
428 1g6h_A High-affinity branched- 90.8 0.1 3.5E-06 52.8 2.7 25 162-186 33-57 (257)
429 1nlf_A Regulatory protein REPA 90.8 0.23 8E-06 51.0 5.5 43 162-204 30-79 (279)
430 2r6a_A DNAB helicase, replicat 90.8 0.48 1.6E-05 52.4 8.4 50 162-215 203-252 (454)
431 3exa_A TRNA delta(2)-isopenten 90.8 0.13 4.3E-06 53.1 3.3 25 162-186 3-27 (322)
432 1mv5_A LMRA, multidrug resista 90.7 0.11 3.8E-06 52.1 2.9 25 162-186 28-52 (243)
433 2ff7_A Alpha-hemolysin translo 90.6 0.11 3.8E-06 52.2 2.7 25 162-186 35-59 (247)
434 1vpl_A ABC transporter, ATP-bi 90.6 0.11 3.7E-06 52.5 2.7 25 162-186 41-65 (256)
435 3k1j_A LON protease, ATP-depen 90.6 0.16 5.6E-06 58.5 4.5 43 140-186 42-84 (604)
436 2eyu_A Twitching motility prot 90.5 0.15 5.1E-06 51.7 3.5 27 160-186 23-49 (261)
437 3a8t_A Adenylate isopentenyltr 90.5 0.13 4.3E-06 53.7 3.1 25 162-186 40-64 (339)
438 2qi9_C Vitamin B12 import ATP- 90.4 0.12 4E-06 52.0 2.7 25 162-186 26-50 (249)
439 2ghi_A Transport protein; mult 90.4 0.12 4.1E-06 52.4 2.7 25 162-186 46-70 (260)
440 2v9p_A Replication protein E1; 90.4 0.14 4.9E-06 52.9 3.3 27 160-186 124-150 (305)
441 4eaq_A DTMP kinase, thymidylat 90.4 0.28 9.4E-06 48.7 5.3 27 161-187 25-51 (229)
442 2ixe_A Antigen peptide transpo 90.3 0.12 4.1E-06 52.7 2.7 25 162-186 45-69 (271)
443 3foz_A TRNA delta(2)-isopenten 90.3 0.16 5.6E-06 52.1 3.7 25 162-186 10-34 (316)
444 2nq2_C Hypothetical ABC transp 90.2 0.12 4.2E-06 52.0 2.7 25 162-186 31-55 (253)
445 2yz2_A Putative ABC transporte 90.2 0.12 4.2E-06 52.5 2.7 25 162-186 33-57 (266)
446 2ihy_A ABC transporter, ATP-bi 90.2 0.12 4.3E-06 52.8 2.7 25 162-186 47-71 (279)
447 2f9l_A RAB11B, member RAS onco 90.2 0.16 5.5E-06 49.0 3.4 24 162-185 5-28 (199)
448 3lv8_A DTMP kinase, thymidylat 90.1 0.42 1.4E-05 47.4 6.4 37 162-200 27-63 (236)
449 1ltq_A Polynucleotide kinase; 90.0 0.16 5.5E-06 52.8 3.5 23 163-185 3-25 (301)
450 3gqb_B V-type ATP synthase bet 90.0 0.27 9.2E-06 53.2 5.2 93 162-254 147-262 (464)
451 2dyk_A GTP-binding protein; GT 90.0 0.18 6.3E-06 46.4 3.5 23 163-185 2-24 (161)
452 4tmk_A Protein (thymidylate ki 90.0 0.47 1.6E-05 46.2 6.6 51 163-215 4-54 (213)
453 3cmw_A Protein RECA, recombina 89.9 0.42 1.4E-05 60.7 7.6 85 162-254 383-472 (1706)
454 3sop_A Neuronal-specific septi 89.9 0.16 5.6E-06 51.7 3.3 23 164-186 4-26 (270)
455 2wji_A Ferrous iron transport 89.9 0.16 5.4E-06 47.3 3.0 23 163-185 4-26 (165)
456 1q3t_A Cytidylate kinase; nucl 89.7 0.21 7.1E-06 49.8 3.9 25 162-186 16-40 (236)
457 1u0j_A DNA replication protein 89.7 0.38 1.3E-05 48.3 5.7 40 147-186 87-128 (267)
458 3io3_A DEHA2D07832P; chaperone 89.7 0.4 1.4E-05 50.8 6.2 48 157-205 13-60 (348)
459 1yrb_A ATP(GTP)binding protein 89.7 0.21 7.1E-06 50.7 4.0 25 162-186 14-38 (262)
460 1pgv_A TMD-1, tropomodulin TMD 89.6 0.19 6.6E-06 48.1 3.3 63 542-605 37-111 (197)
461 3zvl_A Bifunctional polynucleo 89.5 0.17 5.7E-06 55.4 3.2 27 160-186 256-282 (416)
462 3end_A Light-independent proto 89.3 0.26 8.8E-06 51.4 4.4 41 160-203 39-79 (307)
463 2qe7_A ATP synthase subunit al 89.3 0.56 1.9E-05 51.4 7.1 88 162-254 162-265 (502)
464 2pjz_A Hypothetical protein ST 89.3 0.16 5.6E-06 51.4 2.7 24 162-185 30-53 (263)
465 3bgw_A DNAB-like replicative h 89.2 1 3.5E-05 49.4 9.3 40 162-204 197-236 (444)
466 3nh6_A ATP-binding cassette SU 89.2 0.15 5.1E-06 52.9 2.4 26 161-186 79-104 (306)
467 2zej_A Dardarin, leucine-rich 89.2 0.14 4.8E-06 48.7 2.1 22 164-185 4-25 (184)
468 2r9v_A ATP synthase subunit al 89.2 0.53 1.8E-05 51.6 6.7 88 162-254 175-278 (515)
469 1svm_A Large T antigen; AAA+ f 89.1 0.2 6.9E-06 53.6 3.4 27 160-186 167-193 (377)
470 2vp4_A Deoxynucleoside kinase; 89.1 0.13 4.6E-06 51.0 1.9 25 161-185 19-43 (230)
471 2c61_A A-type ATP synthase non 89.1 0.33 1.1E-05 52.9 5.1 92 162-253 152-259 (469)
472 3eph_A TRNA isopentenyltransfe 89.1 0.23 8E-06 53.0 3.8 24 163-186 3-26 (409)
473 4edh_A DTMP kinase, thymidylat 89.0 0.65 2.2E-05 45.3 6.7 26 162-187 6-31 (213)
474 2qmh_A HPR kinase/phosphorylas 89.0 0.18 6.2E-06 48.0 2.6 24 163-186 35-58 (205)
475 2r8r_A Sensor protein; KDPD, P 89.0 0.42 1.4E-05 46.6 5.2 37 164-203 8-44 (228)
476 3iqw_A Tail-anchored protein t 88.9 0.49 1.7E-05 49.7 6.2 47 157-206 11-57 (334)
477 2ce2_X GTPase HRAS; signaling 88.9 0.22 7.4E-06 46.0 3.1 22 164-185 5-26 (166)
478 3cmw_A Protein RECA, recombina 88.8 0.57 1.9E-05 59.5 7.6 84 162-253 1431-1519(1706)
479 2wjg_A FEOB, ferrous iron tran 88.8 0.21 7.3E-06 47.5 3.1 24 162-185 7-30 (188)
480 2ocp_A DGK, deoxyguanosine kin 88.8 0.25 8.7E-06 49.4 3.7 25 162-186 2-26 (241)
481 3gmt_A Adenylate kinase; ssgci 88.7 0.24 8.3E-06 48.7 3.4 25 162-186 8-32 (230)
482 2bbs_A Cystic fibrosis transme 88.7 0.18 6.3E-06 51.8 2.7 25 162-186 64-88 (290)
483 2ged_A SR-beta, signal recogni 88.7 0.44 1.5E-05 45.5 5.3 25 161-185 47-71 (193)
484 1z2a_A RAS-related protein RAB 88.6 0.23 8E-06 46.0 3.2 23 163-185 6-28 (168)
485 3kta_A Chromosome segregation 88.6 0.23 7.9E-06 47.1 3.2 24 163-186 27-50 (182)
486 3tui_C Methionine import ATP-b 88.5 0.22 7.7E-06 52.7 3.2 25 162-186 54-78 (366)
487 3fvq_A Fe(3+) IONS import ATP- 88.4 0.23 7.9E-06 52.5 3.2 25 162-186 30-54 (359)
488 1nij_A Hypothetical protein YJ 88.3 0.23 7.9E-06 52.1 3.2 25 161-185 3-27 (318)
489 3con_A GTPase NRAS; structural 88.3 0.25 8.4E-06 47.1 3.2 23 163-185 22-44 (190)
490 3ld9_A DTMP kinase, thymidylat 88.2 0.62 2.1E-05 45.7 6.0 28 160-187 19-46 (223)
491 1cp2_A CP2, nitrogenase iron p 88.2 0.54 1.8E-05 47.8 5.9 37 163-202 2-38 (269)
492 1lw7_A Transcriptional regulat 88.0 0.27 9.3E-06 52.7 3.6 25 162-186 170-194 (365)
493 2www_A Methylmalonic aciduria 88.0 0.48 1.6E-05 50.3 5.5 26 161-186 73-98 (349)
494 2gj8_A MNME, tRNA modification 88.0 0.24 8.2E-06 46.5 2.8 23 163-185 5-27 (172)
495 1z47_A CYSA, putative ABC-tran 87.9 0.26 8.9E-06 52.1 3.2 25 162-186 41-65 (355)
496 1r8s_A ADP-ribosylation factor 87.9 0.29 1E-05 45.1 3.3 21 165-185 3-23 (164)
497 2ck3_A ATP synthase subunit al 87.8 0.81 2.8E-05 50.2 7.1 93 162-254 162-273 (510)
498 1u8z_A RAS-related protein RAL 87.8 0.28 9.6E-06 45.4 3.2 23 163-185 5-27 (168)
499 2orw_A Thymidine kinase; TMTK, 87.8 0.33 1.1E-05 46.2 3.6 24 163-186 4-27 (184)
500 1zj6_A ADP-ribosylation factor 87.8 0.42 1.4E-05 45.4 4.4 34 151-185 6-39 (187)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.2e-46 Score=430.94 Aligned_cols=310 Identities=17% Similarity=0.222 Sum_probs=242.9
Q ss_pred cchhhHHHHHHHHHHhcCC---CeeEEEEEcCCCchHHHHHHHHHH--HHhhccCCCcEEEEEEeCCCC--CHHHHHHHH
Q 043332 142 AGEKTKKVVERIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINN--RLQKETNKFNVVIWVTVSQPL--DLIKLQNEI 214 (897)
Q Consensus 142 vGr~~~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i 214 (897)
||| ++++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ....+|+.++||++++.+ +...++..|
T Consensus 131 ~GR--~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIR--EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCC--HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699 88899999998643 589999999999999999999998 33 457899999999999985 789999999
Q ss_pred HHHHcCCCC-------CChhHHHHHHHHHHHHhcc-CeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhcc
Q 043332 215 AAALNQSLP-------ENEDEVRRAGRLSGMLKAK-AKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCRF 286 (897)
Q Consensus 215 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~~ 286 (897)
+.+++.... ...+.......+.+.+ ++ |||||||||||+..++ .+. ..+||+||||||+..++..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL-IDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH-TTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHH-cCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 999986421 1112334455666666 45 4999999999997654 111 1279999999999999988
Q ss_pred cc-cce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHHhh
Q 043332 287 MD-CKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNELRG 364 (897)
Q Consensus 287 ~~-~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l~~ 364 (897)
++ ... |++++|+++|||+||.+.++... .++.+++++.+|+++|+|+|||++++|+.|+.+ . |+.+ +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH
Confidence 76 333 99999999999999999987543 246778899999999999999999999999874 2 4433 33332
Q ss_pred ccccCCCchhhhhhhhhhhccCCCchhhHHHHH-----------hhhcCCCCcccCHHHHHHHHHHh--Ccchhhhhhhh
Q 043332 365 LVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFL-----------YCALYPEDFAIPKEELIDYWIAE--GFIEEVKDVQA 431 (897)
Q Consensus 365 ~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~ 431 (897)
.... .....+.+++.+||++|| .++|.||+ |||+||+++.|+ ++.|+|+ ||+........
T Consensus 354 ~l~~--~~~~~i~~~l~~Sy~~L~-~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLES--RGLVGVECITPYSYKSLA-MALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHH--HCSSTTCCCSSSSSSSHH-HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhc--ccHHHHHHHHhccccccc-HHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 2111 023568999999999999 89999999 999999999998 8999999 99986443445
Q ss_pred HHhHHHHHHHHHHHccccccccC--CCeEEehHHHHHHHHhhhcCCC
Q 043332 432 KNDRGHTILNRLVNCCLLESAKD--GRCVKMHDLIRDMALSITSESP 476 (897)
Q Consensus 432 ~~~~~~~~~~~L~~~~ll~~~~~--~~~~~mHdlv~d~a~~~~~~~~ 476 (897)
.++.++ |+++|+++||++.... ..+|+|||+||++|++++.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 566666 9999999999998753 3689999999999999987654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.3e-38 Score=368.00 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=224.1
Q ss_pred cccchhhHHHHHHHHHHhcC-CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcE-EEEEEeCCCCCHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..||| ++++++|.++|.+ +..++|+|+||||+||||||+++|++. .+..+|+. ++|+++++.++...++..|+..
T Consensus 129 ~~VGR--e~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCC--HHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCc--HHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35999 7888999998865 558999999999999999999999875 34567876 9999999999988888888776
Q ss_pred HcCC---CCCC--------hhHHHHHHHHHHHH--hccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhh
Q 043332 218 LNQS---LPEN--------EDEVRRAGRLSGML--KAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVC 284 (897)
Q Consensus 218 l~~~---~~~~--------~~~~~~~~~l~~~l--~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~ 284 (897)
++.. .... .+.......+.+.+ ..++|+||||||||+...|+.+. .||+||||||+..++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHH
Confidence 5321 1100 11222333444433 25789999999999988887652 689999999999998
Q ss_pred cccccce-Eecc------CCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCC-ChhHHH
Q 043332 285 RFMDCKE-IGVE------LLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVD-EIHEWR 356 (897)
Q Consensus 285 ~~~~~~~-~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~-~~~~w~ 356 (897)
..+.... +.++ +|+++|||+||.+.++.. ..++..+| |+|+||||+++|+.|+.+. ...+|+
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 7554432 5666 899999999999885332 12233333 9999999999999999863 567786
Q ss_pred HHHHHHhhccccCCCchhhhhhhhhhhccCCCchhh-HHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhH
Q 043332 357 NALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKV-QQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDR 435 (897)
Q Consensus 357 ~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 435 (897)
.. ....+..+|.+||+.|| ++. |.||+|||+||+++.|+++.++.+|+++| ++.
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred cC-------------ChhHHHHHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 42 13679999999999999 677 99999999999999999999999999887 134
Q ss_pred HHHHHHHHHHccccccccCCCeEEehHHHHHHHH
Q 043332 436 GHTILNRLVNCCLLESAKDGRCVKMHDLIRDMAL 469 (897)
Q Consensus 436 ~~~~~~~L~~~~ll~~~~~~~~~~mHdlv~d~a~ 469 (897)
++.++++|+++||++......+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 7789999999999998645578999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-37 Score=394.23 Aligned_cols=310 Identities=23% Similarity=0.363 Sum_probs=245.5
Q ss_pred ccccccchhhHHHHHHHHHHhc--CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccC-CCcEEEEEEeCCCCC--HHHHH
Q 043332 137 TTATLAGEKTKKVVERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPLD--LIKLQ 211 (897)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~--~~~~~ 211 (897)
+...|||| ++++++|.++|. +++.++|+|+||||+||||||+++|++...... .++.++||++++..+ ....+
T Consensus 122 ~~~~~vgR--~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 122 RPVIFVTR--KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCSSCCCC--HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCceeccH--HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 34579999 889999999885 456899999999999999999999998643344 557888999998543 34456
Q ss_pred HHHHHHHcCCCC----CChhHHHHHHHHHHHHhccC--eEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhc
Q 043332 212 NEIAAALNQSLP----ENEDEVRRAGRLSGMLKAKA--KFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCR 285 (897)
Q Consensus 212 ~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~~--r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~ 285 (897)
..++..+..... ...+.......+...+ .++ |+||||||||+..+|..+ ++||+||||||++.++.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHH-hccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 677777765322 1223334444444444 444 999999999998877664 57899999999999985
Q ss_pred c-cccce-EeccC-CCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHH
Q 043332 286 F-MDCKE-IGVEL-LSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNEL 362 (897)
Q Consensus 286 ~-~~~~~-~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l 362 (897)
. ++... +++.+ |+++||++||...++.. .+...+++++|+++|+|+||||+++|+.|+.+. ..|+.+++.+
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQL 345 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHH
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHH
Confidence 4 34444 89986 99999999999887543 334456799999999999999999999998754 5799999988
Q ss_pred hhccccC-----CCchhhhhhhhhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHH
Q 043332 363 RGLVRSR-----NGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGH 437 (897)
Q Consensus 363 ~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 437 (897)
....... ......+..++.+||+.|| ++.|.||+|||+||+++.|+++.++..|.++ ++.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~ 412 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVE 412 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCC-HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHH
Confidence 6655332 1223579999999999999 7899999999999999999999999999654 25678
Q ss_pred HHHHHHHHccccccccCC--CeEEehHHHHHHHHhhhcCC
Q 043332 438 TILNRLVNCCLLESAKDG--RCVKMHDLIRDMALSITSES 475 (897)
Q Consensus 438 ~~~~~L~~~~ll~~~~~~--~~~~mHdlv~d~a~~~~~~~ 475 (897)
.++++|+++||++...++ .+|+||++||++++..+.++
T Consensus 413 ~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 899999999999987554 36999999999999987655
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=332.54 Aligned_cols=308 Identities=22% Similarity=0.340 Sum_probs=233.7
Q ss_pred ccccccchhhHHHHHHHHHHhcC--CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCC-cEEEEEEeCCCCCHHHHHHH
Q 043332 137 TTATLAGEKTKKVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF-NVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~ 213 (897)
+...+||| +.++++|.++|.. ++.++|+|+|+||+||||||++++++......+| +.++|++++.. +...+...
T Consensus 122 ~~~~~vGR--~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 122 RPVVFVTR--KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCSSCCCC--HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCeeccc--HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 34579999 8889999999873 4689999999999999999999998752214567 68999999875 33334433
Q ss_pred H---HHHHcCCC----CCChhHHHHHHHHHHHHhc-cCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchhhc
Q 043332 214 I---AAALNQSL----PENEDEVRRAGRLSGMLKA-KAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGVCR 285 (897)
Q Consensus 214 i---~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v~~ 285 (897)
+ +..++... ....+.......+...+.. .+++||||||+|+...+..+ +.|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 3 44554211 1122333444555555533 26899999999987666543 46899999999999887
Q ss_pred ccccceEec---cCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcCCCChhHHHHHHHHH
Q 043332 286 FMDCKEIGV---ELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRGVDEIHEWRNALNEL 362 (897)
Q Consensus 286 ~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~~~~~~~w~~~l~~l 362 (897)
.+....+++ ++|+.+||++||...++... ....+.+.+|+++|+|+|+|++.+|+.++... ..|..+++.+
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 654433444 68999999999998876432 22345788999999999999999999998743 4799888888
Q ss_pred hhccccC-----CCchhhhhhhhhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhhhhhhhHHhHHH
Q 043332 363 RGLVRSR-----NGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGH 437 (897)
Q Consensus 363 ~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 437 (897)
....... ......+..++..||+.|| ++.|.||++||+||+++.|+.+.+...|.++ .+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~-~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~ 412 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVE 412 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC-TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCC-HHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHH
Confidence 6543221 1233579999999999999 7899999999999999999999999999543 23567
Q ss_pred HHHHHHHHccccccccCC--CeEEehHHHHHHHHhhhc
Q 043332 438 TILNRLVNCCLLESAKDG--RCVKMHDLIRDMALSITS 473 (897)
Q Consensus 438 ~~~~~L~~~~ll~~~~~~--~~~~mHdlv~d~a~~~~~ 473 (897)
.++++|+++||++...++ .+|+||+++|++++....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 899999999999865443 479999999999998743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=4.8e-24 Score=252.37 Aligned_cols=164 Identities=23% Similarity=0.240 Sum_probs=139.5
Q ss_pred ecCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc
Q 043332 481 KAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV 560 (897)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 560 (897)
..+..+..+|.. .+.++++|++++|.+..++...+.++++|++|++++| .+..+++..|.++++|++|+|++|.++.
T Consensus 18 c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 18 CMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred ccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccc
Confidence 345567778865 4578999999999999999888899999999999999 7778877778999999999999999997
Q ss_pred C-CcccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCc--ccCccccCCCCCCEEeCCCCCCCcCCCCccc
Q 043332 561 L-PSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIE--EVPEGMEMLENLSYLYLYSLPLKKFPTGILP 636 (897)
Q Consensus 561 l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (897)
+ |..++++++|++|++++|......| .++++++|++|++++|.+. .+|..++++++|++|++++|.+..+++..++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 7 7889999999999999985433343 6999999999999999987 4799999999999999999998888776666
Q ss_pred CCcccC----eEecc
Q 043332 637 RLRDLY----KLKLS 647 (897)
Q Consensus 637 ~l~~L~----~L~l~ 647 (897)
.+++|+ +|+++
T Consensus 175 ~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 175 FLRENPQVNLSLDMS 189 (606)
T ss_dssp HHHHCTTCCCEEECT
T ss_pred hhhccccccceeecc
Confidence 666554 56665
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=252.84 Aligned_cols=163 Identities=23% Similarity=0.258 Sum_probs=136.4
Q ss_pred ecCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc
Q 043332 481 KAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV 560 (897)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 560 (897)
..+..+..+|.. .+.++++|++++|.+..++...+..+++|++|++++| .+..++...|.++++|++|++++|.++.
T Consensus 14 c~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 14 CMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp CCSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eCCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCc
Confidence 334556777764 4568999999999999998888889999999999999 6888887778999999999999999987
Q ss_pred CC-cccccCcccceeeccccccccCCc--chhccccCCEeeccCCcCcc--cCccccCCCCCCEEeCCCCCCCcCCCCcc
Q 043332 561 LP-SSVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEE--VPEGMEMLENLSYLYLYSLPLKKFPTGIL 635 (897)
Q Consensus 561 lp-~~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~l 635 (897)
+| ..++++++|++|++++| .++.+| .++++++|++|++++|.+.. +|..++++++|++|++++|.+..+++..+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred cCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 75 67899999999999998 566666 48999999999999998875 68899999999999999998887766556
Q ss_pred cCCccc----CeEecc
Q 043332 636 PRLRDL----YKLKLS 647 (897)
Q Consensus 636 ~~l~~L----~~L~l~ 647 (897)
+.+++| ..|+++
T Consensus 170 ~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLS 185 (570)
T ss_dssp HHHHTCTTCCCEEECT
T ss_pred cchhccchhhhhcccC
Confidence 666666 556555
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.9e-24 Score=258.00 Aligned_cols=318 Identities=14% Similarity=0.135 Sum_probs=166.5
Q ss_pred CChhH-hhCCCCccEEEecCCCCC-cCCcccccCcccceeecccccccc--CCc-chhccc-------cCCEeeccCCcC
Q 043332 537 IPECF-FVHMHGLKVLNLSHTDIE-VLPSSVSDLTNLRSLLLRYCLRLR--RVP-SVAKLL-------ALHYLDLEATRI 604 (897)
Q Consensus 537 ~~~~~-~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~--~lp-~~~~l~-------~L~~L~l~~~~l 604 (897)
+|..+ |.++++|++|+|++|.+. .+|..++++++|++|+|++|..++ .+| .++++. +|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 45443 235566666666655533 555555666666666666554233 345 355444 566666666655
Q ss_pred cccCc--cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhh
Q 043332 605 EEVPE--GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNI 682 (897)
Q Consensus 605 ~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~ 682 (897)
..+|. .++++++|++|++++|.+..+| .++++++|++|+++ .+... ..+..+..++++|+.|+++.|.+..++.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls-~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLD-YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECC-SSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECc-CCccc-cchHHHhhccccCCEEECcCCCCCcCch
Confidence 55655 5666666666666666555555 24556666666665 22222 2222333333235566666555554433
Q ss_pred hhhccCCCCceeeEEEecccc--ccc---ccc-cccccccceeeecccccCCCCc-ccCccccceeEEeccCCccccccc
Q 043332 683 YVKSTDGRGSKNYCLLLSASD--MRG---ILI-TDLEVDKSVSLMNCKICEREEP-IVLPEDVQFLQMFEVSDVASLNDV 755 (897)
Q Consensus 683 ~~~~~~~~~L~~l~~~~~~~~--~~~---~~~-~~~~~l~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~ 755 (897)
........+|+.|.+..+... .+. .+. ...+.++.|++++|.+...... +..+++|+.|.+++|. +..+...
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChH
Confidence 222222222444444332211 010 000 0223566666666665532222 2355667777776653 1111100
Q ss_pred CcccCCc-cccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccc
Q 043332 756 LPREQGL-VNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVT 834 (897)
Q Consensus 756 ~~~~~~l-~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 834 (897)
. .... +....++ +|+.|+|++|. ++.+|..-....+++|+.|++++| .++.++ .....
T Consensus 716 ~--~~~~~~~l~nl~-~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp----------------~~l~~ 774 (876)
T 4ecn_A 716 S--LKPKDGNYKNTY-LLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN-CFSSFP----------------TQPLN 774 (876)
T ss_dssp S--SSCTTSCCTTGG-GCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSS-CCSSCC----------------CGGGG
T ss_pred H--hccccccccccC-CccEEECCCCC-CccchHHhhhccCCCcCEEEeCCC-CCCccc----------------hhhhc
Confidence 0 0000 1123455 88888888874 556654311137888889988885 455432 12236
Q ss_pred cCccceeecccCccc------ccccCCCCcccCCCccEEEecCCCCCccccCCcc
Q 043332 835 LPRLKRLGFYFLPEF------KSFCSNNGVLVCNSLQEIEVRGCPKLKRLSLSLP 883 (897)
Q Consensus 835 fp~L~~L~L~~~~~L------~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~ 883 (897)
+++|+.|+|++++.+ ..++. ....+++|++|++++|. ++.+|..+.
T Consensus 775 L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~-L~~Ip~~l~ 826 (876)
T 4ecn_A 775 SSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND-IRKVDEKLT 826 (876)
T ss_dssp CTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred CCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCC-CCccCHhhc
Confidence 889999999875422 22322 44458899999999995 488887653
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.4e-23 Score=234.52 Aligned_cols=321 Identities=16% Similarity=0.208 Sum_probs=218.3
Q ss_pred ccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCccccee
Q 043332 495 WKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSL 574 (897)
Q Consensus 495 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 574 (897)
...++++|++++|.+..+++ +..+++|+.|++++| .+..++. +.++++|++|++++|.++.+|. +..+++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 44677888888887777765 567778888888777 5555655 5777888888888887777764 7778888888
Q ss_pred eccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhh
Q 043332 575 LLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALR 654 (897)
Q Consensus 575 ~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (897)
++++| .+..++.++.+++|++|+++ +.+..++. ++++++|++|++++|.+..++. +.++++|++|+++. +....
T Consensus 140 ~l~~n-~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~-n~l~~ 213 (466)
T 1o6v_A 140 ELSSN-TISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATN-NQISD 213 (466)
T ss_dssp EEEEE-EECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCS-SCCCC
T ss_pred ECCCC-ccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecC-Ccccc
Confidence 88876 45566677777778887775 34444433 7788888888888888777653 57788888888872 22222
Q ss_pred hcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccC
Q 043332 655 ETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVL 734 (897)
Q Consensus 655 ~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~ 734 (897)
.. .++.+++ |+.|+++.|.+..++.. ....+|+.+.+..+.......+ ..++.++.+++++|.+.+..+ +..
T Consensus 214 ~~--~~~~l~~-L~~L~l~~n~l~~~~~l---~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~ 285 (466)
T 1o6v_A 214 IT--PLGILTN-LDELSLNGNQLKDIGTL---ASLTNLTDLDLANNQISNLAPL-SGLTKLTELKLGANQISNISP-LAG 285 (466)
T ss_dssp CG--GGGGCTT-CCEEECCSSCCCCCGGG---GGCTTCSEEECCSSCCCCCGGG-TTCTTCSEEECCSSCCCCCGG-GTT
T ss_pred cc--cccccCC-CCEEECCCCCcccchhh---hcCCCCCEEECCCCccccchhh-hcCCCCCEEECCCCccCcccc-ccC
Confidence 21 2566777 88888887776654322 2334566666654433222222 266778888888877654433 667
Q ss_pred ccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcc
Q 043332 735 PEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVV 814 (897)
Q Consensus 735 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~ 814 (897)
+++|+.|.+++|. ...++.++.++ +|+.|++++|. +..+++ +..+++|+.|++++| .++.+.
T Consensus 286 l~~L~~L~L~~n~-----------l~~~~~~~~l~-~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~- 347 (466)
T 1o6v_A 286 LTALTNLELNENQ-----------LEDISPISNLK-NLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDVS- 347 (466)
T ss_dssp CTTCSEEECCSSC-----------CSCCGGGGGCT-TCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCCG-
T ss_pred CCccCeEEcCCCc-----------ccCchhhcCCC-CCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCch-
Confidence 7888888888775 33344467777 89999998885 455444 457788999999886 444431
Q ss_pred cccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCC
Q 043332 815 VEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 873 (897)
....+++|+.|++++|+ ++.+.. ...+++|++|++++|+
T Consensus 348 ----------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 348 ----------------SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp ----------------GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred ----------------hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 12258899999999885 444432 4457899999999984
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=4.2e-23 Score=235.42 Aligned_cols=322 Identities=17% Similarity=0.208 Sum_probs=253.7
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 575 (897)
..+++.|++.++.+..++. +..+++|++|++++| .+..++. +.++++|++|++++|.++.++. ++.+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcc--hhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 4679999999999998874 568999999999999 6777776 7999999999999999998877 99999999999
Q ss_pred ccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 576 LRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 576 L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
+++| .++.+|.+.++++|++|++++|.+..+| .++.+++|++|+++ +.+..+++ ++++++|++|+++. +....
T Consensus 119 L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~-n~l~~- 191 (466)
T 1o6v_A 119 LFNN-QITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISS-NKVSD- 191 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCS-SCCCC-
T ss_pred CCCC-CCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcC-CcCCC-
Confidence 9998 5777778999999999999999998876 58999999999996 45555554 68999999999983 33222
Q ss_pred cHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCc
Q 043332 656 TVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLP 735 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~ 735 (897)
+..+..+++ |+.|+++.|.+..... .....+|+.+.+..+.......+. .++.++.+++++|.+.+..+ +..+
T Consensus 192 -~~~l~~l~~-L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~l~~~~~-~~~l 264 (466)
T 1o6v_A 192 -ISVLAKLTN-LESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAP-LSGL 264 (466)
T ss_dssp -CGGGGGCTT-CSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGG-GCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred -ChhhccCCC-CCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhh-cCCCCCEEECCCCccccchh-hhcC
Confidence 234778888 9999999988766543 223456888877655443333333 67889999999998865543 7788
Q ss_pred cccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhccc
Q 043332 736 EDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVV 815 (897)
Q Consensus 736 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~ 815 (897)
++|+.|.++++. ...++.+..++ +|+.|++++|. ++.+++ +..+++|+.|++++| .+..+..
T Consensus 265 ~~L~~L~l~~n~-----------l~~~~~~~~l~-~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~- 326 (466)
T 1o6v_A 265 TKLTELKLGANQ-----------ISNISPLAGLT-ALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFN-NISDISP- 326 (466)
T ss_dssp TTCSEEECCSSC-----------CCCCGGGTTCT-TCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSS-CCSCCGG-
T ss_pred CCCCEEECCCCc-----------cCccccccCCC-ccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCC-cCCCchh-
Confidence 999999999885 33344467788 99999999985 555544 567889999999997 4554421
Q ss_pred ccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCC
Q 043332 816 EDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKL 875 (897)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L 875 (897)
...+++|+.|+++++ .++.+. ....+++|++|++++|+-.
T Consensus 327 ----------------~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 327 ----------------VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ----------------GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCCC
T ss_pred ----------------hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCccC
Confidence 125899999999998 466552 3445889999999999543
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4e-23 Score=226.22 Aligned_cols=303 Identities=17% Similarity=0.218 Sum_probs=227.2
Q ss_pred ccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCccccee
Q 043332 495 WKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSL 574 (897)
Q Consensus 495 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 574 (897)
..+++++|+++++.+..++. +..+++|++|++++| .+..++. +.++++|++|++++|.++.+| .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchh--hhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 34678999999998888864 567899999999998 6777776 688999999999999988876 58899999999
Q ss_pred eccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhh
Q 043332 575 LLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALR 654 (897)
Q Consensus 575 ~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (897)
++++| .+..+|.+..+++|++|++++|.....+..+..+++|++|++++|.+..++. ++.+++|++|+++. +....
T Consensus 116 ~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~-n~l~~ 191 (347)
T 4fmz_A 116 YLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY-NQIED 191 (347)
T ss_dssp ECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT-SCCCC
T ss_pred ECcCC-cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC-Ccccc
Confidence 99987 5667777889999999999999544444558899999999999998888765 68889999999983 32222
Q ss_pred hcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccC
Q 043332 655 ETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVL 734 (897)
Q Consensus 655 ~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~ 734 (897)
+..+..+++ |+.|+++.|.+...... ..++.++.+++++|.+....+ +..
T Consensus 192 --~~~~~~l~~-L~~L~l~~n~l~~~~~~--------------------------~~~~~L~~L~l~~n~l~~~~~-~~~ 241 (347)
T 4fmz_A 192 --ISPLASLTS-LHYFTAYVNQITDITPV--------------------------ANMTRLNSLKIGNNKITDLSP-LAN 241 (347)
T ss_dssp --CGGGGGCTT-CCEEECCSSCCCCCGGG--------------------------GGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred --cccccCCCc-cceeecccCCCCCCchh--------------------------hcCCcCCEEEccCCccCCCcc-hhc
Confidence 122677777 88888887765543221 145667778888887754433 777
Q ss_pred ccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcc
Q 043332 735 PEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVV 814 (897)
Q Consensus 735 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~ 814 (897)
+++|+.|.+++|. ...++.+..++ +|++|++++|. ++.++ .+..+++|+.|++++| .+.....
T Consensus 242 l~~L~~L~l~~n~-----------l~~~~~~~~l~-~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~L~~n-~l~~~~~ 304 (347)
T 4fmz_A 242 LSQLTWLEIGTNQ-----------ISDINAVKDLT-KLKMLNVGSNQ-ISDIS---VLNNLSQLNSLFLNNN-QLGNEDM 304 (347)
T ss_dssp CTTCCEEECCSSC-----------CCCCGGGTTCT-TCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSS-CCCGGGH
T ss_pred CCCCCEEECCCCc-----------cCCChhHhcCC-CcCEEEccCCc-cCCCh---hhcCCCCCCEEECcCC-cCCCcCh
Confidence 8899999998875 23345567778 99999999984 55553 3667889999999997 3433321
Q ss_pred cccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCC
Q 043332 815 VEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 873 (897)
.....+|+|+.|++++|+ ++.+.. ...+++|++|++++|+
T Consensus 305 ---------------~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 ---------------EVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp ---------------HHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred ---------------hHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 011258999999999997 555533 4457899999999985
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=242.80 Aligned_cols=363 Identities=15% Similarity=0.120 Sum_probs=222.6
Q ss_pred CCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc
Q 043332 484 LRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS 563 (897)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 563 (897)
..+..+|... ..++++|++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.++.+|.
T Consensus 10 n~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 10 NGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp SCCSSCCCSC--CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred CCcccccccc--cccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence 3455677543 378999999999999988767788999999999999 6777766677999999999999999999987
Q ss_pred ccccCcccceeecccccccc-CCc-chhccccCCEeeccCCcCcccCccccCCCCC--CEEeCCCCCC--CcCCCC----
Q 043332 564 SVSDLTNLRSLLLRYCLRLR-RVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENL--SYLYLYSLPL--KKFPTG---- 633 (897)
Q Consensus 564 ~i~~l~~L~~L~L~~~~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~---- 633 (897)
. .+++|++|++++|.... .+| .++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....+.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccc
Confidence 6 89999999999985444 366 69999999999999998876 456777777 9999888876 222221
Q ss_pred ----------------------cccCCcccCeEecccCc-----hhhhhcHHHHHh------------------------
Q 043332 634 ----------------------ILPRLRDLYKLKLSFGR-----EALRETVEEAAR------------------------ 662 (897)
Q Consensus 634 ----------------------~l~~l~~L~~L~l~~~~-----~~~~~~~~~l~~------------------------ 662 (897)
.+.++++|+.|+++.+. ......+..+..
T Consensus 163 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence 12345566666665221 000001111122
Q ss_pred ---hhcccceeEEEeccch-hhhhhhhc---cCCCCceeeEEEeccccccc-ccc------------------------c
Q 043332 663 ---LSNRLDTFEGHFSTLK-DFNIYVKS---TDGRGSKNYCLLLSASDMRG-ILI------------------------T 710 (897)
Q Consensus 663 ---l~~~L~~L~l~~~~l~-~~~~~~~~---~~~~~L~~l~~~~~~~~~~~-~~~------------------------~ 710 (897)
.++ |+.|+++.|.+. .++..... .....|+.+.+..+...++. ++. .
T Consensus 243 ~~~~~~-L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 243 LVWHTT-VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp HHHTSS-CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HhhhCc-ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 235 777777777654 33322210 12233444444433332221 110 2
Q ss_pred ccccccceeeecccccCCC-CcccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCCCCCCh
Q 043332 711 DLEVDKSVSLMNCKICERE-EPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFS 788 (897)
Q Consensus 711 ~~~~l~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~ 788 (897)
.++.++.+++++|.+.+.. ..+..+++|+.|.+++|.- ..+ ..+|. ++.++ +|++|++++|.....++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l-------~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~- 391 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KEL-------SKIAEMTTQMK-SLQQLDISQNSVSYDEK- 391 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC-CBH-------HHHHHHHTTCT-TCCEEECCSSCCBCCGG-
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc-Ccc-------ccchHHHhhCC-CCCEEECCCCcCCcccc-
Confidence 4455556666665554422 2245555666666655531 100 01111 44555 67777776665332232
Q ss_pred hhhhhccCCccEEEEeccccchhhcccccchhhhhhhcccccccccc-CccceeecccCcccccccCCCCcccCCCccEE
Q 043332 789 LQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTL-PRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEI 867 (897)
Q Consensus 789 ~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~f-p~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L 867 (897)
...+..+++|+.|++++|. ++..+. ..+ ++|+.|+++++ +++.++. ....+++|++|
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~-l~~~~~------------------~~l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L 449 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNI-LTDTIF------------------RCLPPRIKVLDLHSN-KIKSIPK--QVVKLEALQEL 449 (520)
T ss_dssp GCSCCCCTTCCEEECCSSC-CCGGGG------------------GSCCTTCCEEECCSS-CCCCCCG--GGGGCTTCCEE
T ss_pred cchhccCccCCEEECcCCC-CCcchh------------------hhhcccCCEEECCCC-cccccch--hhhcCCCCCEE
Confidence 2234456667777776652 221110 023 58888888887 4666654 34467888888
Q ss_pred EecCCCCCccccCC-cccccC
Q 043332 868 EVRGCPKLKRLSLS-LPLLDN 887 (897)
Q Consensus 868 ~i~~C~~L~~lp~~-~~~l~~ 887 (897)
++++| +++.+|.. +..+.+
T Consensus 450 ~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 450 NVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp ECCSS-CCCCCCTTTTTTCTT
T ss_pred ECCCC-cCCccCHHHhccCCc
Confidence 88888 67778776 454444
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.4e-24 Score=253.48 Aligned_cols=310 Identities=13% Similarity=0.180 Sum_probs=148.0
Q ss_pred hCCCCccEEEecCCCCCc------------------CCcccc--cCcccceeeccccccccCCc-chhccccCCEeeccC
Q 043332 543 VHMHGLKVLNLSHTDIEV------------------LPSSVS--DLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEA 601 (897)
Q Consensus 543 ~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~ 601 (897)
+++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+| .++++++|++|++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 455555555555555554 555555 55555555555554444555 455555555555555
Q ss_pred Cc-Ccc--cCccccCC------CCCCEEeCCCCCCCcCCC-CcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeE
Q 043332 602 TR-IEE--VPEGMEML------ENLSYLYLYSLPLKKFPT-GILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFE 671 (897)
Q Consensus 602 ~~-l~~--lp~~~~~l------~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~ 671 (897)
|. ++. +|..++++ ++|++|++++|.+..+|. +.++++++|++|+++ .+...+..+ .+..+++ |+.|+
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~-~N~l~g~ip-~~~~l~~-L~~L~ 359 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL-YNQLEGKLP-AFGSEIK-LASLN 359 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECC-SCCCEEECC-CCEEEEE-ESEEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCc-CCcCccchh-hhCCCCC-CCEEE
Confidence 54 442 55544444 555555555555554444 123555555555554 222221111 3444444 55555
Q ss_pred EEeccchhhhhhhhccCCCC-ceeeEEEeccc-cccccccc--------------------------------ccccccc
Q 043332 672 GHFSTLKDFNIYVKSTDGRG-SKNYCLLLSAS-DMRGILIT--------------------------------DLEVDKS 717 (897)
Q Consensus 672 l~~~~l~~~~~~~~~~~~~~-L~~l~~~~~~~-~~~~~~~~--------------------------------~~~~l~~ 717 (897)
++.|.+..++..+. ...+ |+.|.+..+.. .++..+.. ..+.++.
T Consensus 360 L~~N~l~~lp~~l~--~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQITEIPANFC--GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEEECCTTSE--EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccccccHhhh--hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 55444443222111 1112 33333332211 11111110 2224445
Q ss_pred eeeecccccCCCCc-ccCccccceeEEeccCCcccccccCcccCC-ccccccccccccEEEEecCCCCCCCChhhhhhcc
Q 043332 718 VSLMNCKICEREEP-IVLPEDVQFLQMFEVSDVASLNDVLPREQG-LVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPAL 795 (897)
Q Consensus 718 l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L 795 (897)
+++++|.+...... +..+++|+.|.++++.-. .+.... ... .+....++ +|+.|++++|. ++.+|..-....+
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~--~~~~~~~~~~l~-~L~~L~Ls~N~-l~~lp~~~~~~~l 512 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNS--LKDENENFKNTY-LLTSIDLRFNK-LTKLSDDFRATTL 512 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSS--SEETTEECTTGG-GCCEEECCSSC-CCBCCGGGSTTTC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHH--hccccccccccC-CccEEECcCCc-CCccChhhhhccC
Confidence 55555544422211 223455555555554311 111000 000 00122344 77888887765 4455433111367
Q ss_pred CCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCc------ccccccCCCCcccCCCccEEEe
Q 043332 796 QNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLP------EFKSFCSNNGVLVCNSLQEIEV 869 (897)
Q Consensus 796 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~------~L~~~~~~~~~~~~p~L~~L~i 869 (897)
++|+.|++++| .++.++ .....+++|+.|+|++++ -...++. ....+++|++|++
T Consensus 513 ~~L~~L~Ls~N-~l~~ip----------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~L 573 (636)
T 4eco_A 513 PYLVGIDLSYN-SFSKFP----------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQI 573 (636)
T ss_dssp TTCCEEECCSS-CCSSCC----------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEEC
T ss_pred CCcCEEECCCC-CCCCcC----------------hhhhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEEC
Confidence 78888888875 444432 122357888999886543 2233332 4445788999999
Q ss_pred cCCCCCccccCCc
Q 043332 870 RGCPKLKRLSLSL 882 (897)
Q Consensus 870 ~~C~~L~~lp~~~ 882 (897)
++|. ++.+|..+
T Consensus 574 s~N~-l~~ip~~~ 585 (636)
T 4eco_A 574 GSND-IRKVNEKI 585 (636)
T ss_dssp CSSC-CCBCCSCC
T ss_pred CCCc-CCccCHhH
Confidence 9985 48888764
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=4.4e-23 Score=234.98 Aligned_cols=361 Identities=19% Similarity=0.154 Sum_probs=256.3
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
.+..+..+|. .+.++++|++++|.+..+++..+..+++|++|++++|.....++...|.++++|++|+|++|.++.+
T Consensus 18 ~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 18 INRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 3445667775 4578999999999999997777889999999999999554577777789999999999999999865
Q ss_pred -CcccccCcccceeeccccccccCCc-c--hhccccCCEeeccCCcCccc-Ccc-ccCCCCCCEEeCCCCCCCcCCCCcc
Q 043332 562 -PSSVSDLTNLRSLLLRYCLRLRRVP-S--VAKLLALHYLDLEATRIEEV-PEG-MEMLENLSYLYLYSLPLKKFPTGIL 635 (897)
Q Consensus 562 -p~~i~~l~~L~~L~L~~~~~~~~lp-~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~l 635 (897)
|..++++++|++|++++|......| . +.++++|++|++++|.+..+ |.. ++++++|++|++++|.+...++..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 7789999999999999985544344 3 89999999999999999877 555 8999999999999999888877666
Q ss_pred cCC--cccCeEecccCchhhhhcH--------HHHHhhhcccceeEEEeccchhhhh--hhhccCCCCceeeEEEeccc-
Q 043332 636 PRL--RDLYKLKLSFGREALRETV--------EEAARLSNRLDTFEGHFSTLKDFNI--YVKSTDGRGSKNYCLLLSAS- 702 (897)
Q Consensus 636 ~~l--~~L~~L~l~~~~~~~~~~~--------~~l~~l~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~l~~~~~~~- 702 (897)
..+ .+|+.|+++. +....... ..+..+++ |+.|+++.|.+..... +.......+++.+.+.....
T Consensus 175 ~~l~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 175 LNFQGKHFTLLRLSS-ITLQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp GGGTTCEEEEEECTT-CBCTTCSTTCTTHHHHCCTTTTCE-EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hcccccccccccccc-Ccccccchhhccccccccccccce-eeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 666 5777888772 22211110 11224456 8888888876643211 11111223455554432110
Q ss_pred -------cccc-----ccccccccccceeeecccccCCCCc-ccCccccceeEEeccCCcccccccCcccCCc-c-cccc
Q 043332 703 -------DMRG-----ILITDLEVDKSVSLMNCKICEREEP-IVLPEDVQFLQMFEVSDVASLNDVLPREQGL-V-NIGK 767 (897)
Q Consensus 703 -------~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~-~~~~ 767 (897)
.+.. ......+.++.++++++.+.+..+. +..+++|+.|+++++.- ... | .++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----------~~~~~~~~~~ 321 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-----------NKIDDNAFWG 321 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----------CEECTTTTTT
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-----------cccChhHhcC
Confidence 0000 0001235788899999888665443 77889999999988851 122 2 3567
Q ss_pred ccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCc
Q 043332 768 FSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLP 847 (897)
Q Consensus 768 l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 847 (897)
++ +|++|++++|. ++.+++ ..+.++++|+.|++++| .++.+.. .....+|+|++|+|+++
T Consensus 322 l~-~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~---------------~~~~~l~~L~~L~L~~N- 381 (455)
T 3v47_A 322 LT-HLLKLNLSQNF-LGSIDS-RMFENLDKLEVLDLSYN-HIRALGD---------------QSFLGLPNLKELALDTN- 381 (455)
T ss_dssp CT-TCCEEECCSSC-CCEECG-GGGTTCTTCCEEECCSS-CCCEECT---------------TTTTTCTTCCEEECCSS-
T ss_pred cc-cCCEEECCCCc-cCCcCh-hHhcCcccCCEEECCCC-cccccCh---------------hhccccccccEEECCCC-
Confidence 78 99999999985 455543 34678999999999996 4554421 12235899999999997
Q ss_pred ccccccCCCCcccCCCccEEEecCCCCCcccc
Q 043332 848 EFKSFCSNNGVLVCNSLQEIEVRGCPKLKRLS 879 (897)
Q Consensus 848 ~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp 879 (897)
+++.+... ....+++|++|++++++--...|
T Consensus 382 ~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 382 QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence 46666541 22457899999999886554444
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=2.9e-23 Score=242.53 Aligned_cols=191 Identities=23% Similarity=0.240 Sum_probs=156.3
Q ss_pred CCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc
Q 043332 484 LRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS 563 (897)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 563 (897)
..+..+|.. ...++++|++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|++++|.++.+|.
T Consensus 15 ~~l~~ip~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 15 RSFTSIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSSCCSC--CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred Ccccccccc--CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCH
Confidence 456677764 3478999999999999998777889999999999999 6777877778999999999999999998876
Q ss_pred c-cccCcccceeecccccccc-CCc-chhccccCCEeeccCCc-CcccC-ccccCCCCCCEEeCCCCCCCcCCCCcccCC
Q 043332 564 S-VSDLTNLRSLLLRYCLRLR-RVP-SVAKLLALHYLDLEATR-IEEVP-EGMEMLENLSYLYLYSLPLKKFPTGILPRL 638 (897)
Q Consensus 564 ~-i~~l~~L~~L~L~~~~~~~-~lp-~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (897)
. ++.+++|++|++++|.... ..| .++++++|++|++++|. +..+| ..++++++|++|++++|.+....+..++++
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 5 9999999999999985433 345 69999999999999997 67777 479999999999999999887666667999
Q ss_pred cccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchh
Q 043332 639 RDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
++|++|+++. +.........+..+++ |+.|+++.|.+..
T Consensus 172 ~~L~~L~l~~-n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~ 210 (549)
T 2z81_A 172 RDIHHLTLHL-SESAFLLEIFADILSS-VRYLELRDTNLAR 210 (549)
T ss_dssp SEEEEEEEEC-SBSTTHHHHHHHSTTT-BSEEEEESCBCTT
T ss_pred ccCceEeccc-CcccccchhhHhhccc-ccEEEccCCcccc
Confidence 9999999983 2222222223456788 9999999887665
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=4.2e-23 Score=244.27 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=134.3
Q ss_pred ecCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc
Q 043332 481 KAGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV 560 (897)
Q Consensus 481 ~~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 560 (897)
..+..+..+|.. .+..+++|++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|++++|.++.
T Consensus 19 c~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 19 CENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp CTTSCCSSCCTT--SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred CCCCCcccCcCC--CCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccc
Confidence 344566777764 4568999999999999998888899999999999999 6777766667999999999999999985
Q ss_pred C-CcccccCcccceeeccccccccCC-c-chhccccCCEeeccCCcCcccC-ccccCCCCCCEEeCCCCCCCcCCCCccc
Q 043332 561 L-PSSVSDLTNLRSLLLRYCLRLRRV-P-SVAKLLALHYLDLEATRIEEVP-EGMEMLENLSYLYLYSLPLKKFPTGILP 636 (897)
Q Consensus 561 l-p~~i~~l~~L~~L~L~~~~~~~~l-p-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (897)
+ |..++.+++|++|++++|. ++.+ | .++++++|++|++++|.+..++ ..+..+++|++|++++|.+..+++..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred cChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh
Confidence 5 6789999999999999984 5555 4 6899999999999999988763 3344489999999999998888776678
Q ss_pred CCcccC--eEecc
Q 043332 637 RLRDLY--KLKLS 647 (897)
Q Consensus 637 ~l~~L~--~L~l~ 647 (897)
.+++|+ +|+++
T Consensus 175 ~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 175 SLQQATNLSLNLN 187 (606)
T ss_dssp TTTTCCSEEEECT
T ss_pred hhcccceeEEecC
Confidence 888888 67766
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=3e-23 Score=249.25 Aligned_cols=351 Identities=12% Similarity=0.105 Sum_probs=256.6
Q ss_pred CccchhccccccEEEcccccccc------------------CCCCC-CCCCCCccEEEccCCCCcccCChhHhhCCCCcc
Q 043332 489 FPVEQEWKENLERVSLMKNNIKE------------------IPSYM-SPHCDILSTLLLQANGNLWTIPECFFVHMHGLK 549 (897)
Q Consensus 489 ~p~~~~~~~~l~~l~l~~~~~~~------------------~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr 549 (897)
+|.......+++.|++++|.+.. +|..+ |..+++|+.|++++|.....+|.. |.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence 77776677899999999999998 77765 348999999999999767778855 58999999
Q ss_pred EEEecCCC-CCc--CCcccccCc-------ccceeeccccccccCCcc---hhccccCCEeeccCCcCcccCccccCCCC
Q 043332 550 VLNLSHTD-IEV--LPSSVSDLT-------NLRSLLLRYCLRLRRVPS---VAKLLALHYLDLEATRIEEVPEGMEMLEN 616 (897)
Q Consensus 550 ~L~L~~~~-i~~--lp~~i~~l~-------~L~~L~L~~~~~~~~lp~---~~~l~~L~~L~l~~~~l~~lp~~~~~l~~ 616 (897)
+|+|++|. ++. +|..++.+. +|++|+|++|. ++.+|. ++++++|++|++++|.+..+| .++++++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 99999998 884 888787776 99999999985 457875 999999999999999999999 9999999
Q ss_pred CCEEeCCCCCCCcCCCCcccCCcc-cCeEecccCchhhhhcHHHHHhh--hcccceeEEEeccchhhhhhh----hccCC
Q 043332 617 LSYLYLYSLPLKKFPTGILPRLRD-LYKLKLSFGREALRETVEEAARL--SNRLDTFEGHFSTLKDFNIYV----KSTDG 689 (897)
Q Consensus 617 L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l--~~~L~~L~l~~~~l~~~~~~~----~~~~~ 689 (897)
|++|++++|.+..+|.. +.++++ |++|+++. +... ..+..+..+ ++ |+.|+++.|.+......+ .....
T Consensus 597 L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~-N~L~-~lp~~~~~~~~~~-L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSH-NKLK-YIPNIFNAKSVYV-MGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp ESEEECCSSCCSCCCTT-SCEECTTCCEEECCS-SCCC-SCCSCCCTTCSSC-EEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred ceEEECcCCccccchHH-HhhccccCCEEECcC-CCCC-cCchhhhccccCC-CCEEECcCCcCCCccccchhhhccccC
Confidence 99999999999988877 688998 99999983 3333 222223332 34 899999998875432111 11122
Q ss_pred CCceeeEEEeccc-ccccccccccccccceeeecccccCCCCccc--------CccccceeEEeccCCcccccccCcccC
Q 043332 690 RGSKNYCLLLSAS-DMRGILITDLEVDKSVSLMNCKICEREEPIV--------LPEDVQFLQMFEVSDVASLNDVLPREQ 760 (897)
Q Consensus 690 ~~L~~l~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~ 760 (897)
.+|+.|.+..+.. .++..+...++.|+.|++++|.+......+. .+++|+.|.+++|. ..
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-----------L~ 741 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-----------LT 741 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-----------CC
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-----------Cc
Confidence 3566666654433 2344443467889999999998873332221 23489999999985 22
Q ss_pred Cccc-cc--cccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCc
Q 043332 761 GLVN-IG--KFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPR 837 (897)
Q Consensus 761 ~l~~-~~--~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~ 837 (897)
.+|. +. .++ +|+.|+|++|. +..+|.. +.++++|+.|++++|+.+..- .+.+..+.....+|+
T Consensus 742 ~lp~~l~~~~l~-~L~~L~Ls~N~-L~~lp~~--l~~L~~L~~L~Ls~N~~ls~N----------~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 742 SLSDDFRATTLP-YLSNMDVSYNC-FSSFPTQ--PLNSSQLKAFGIRHQRDAEGN----------RILRQWPTGITTCPS 807 (876)
T ss_dssp CCCGGGSTTTCT-TCCEEECCSSC-CSSCCCG--GGGCTTCCEEECCCCBCTTCC----------BCCCCCCTTGGGCSS
T ss_pred cchHHhhhccCC-CcCEEEeCCCC-CCccchh--hhcCCCCCEEECCCCCCcccc----------cccccChHHHhcCCC
Confidence 3443 43 788 99999999986 4456433 558999999999885411100 000011112336899
Q ss_pred cceeecccCcccccccCCCCcccCCCccEEEecCCCCCc
Q 043332 838 LKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLK 876 (897)
Q Consensus 838 L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~ 876 (897)
|+.|+|++|. +..++. .. +++|+.|++++|+...
T Consensus 808 L~~L~Ls~N~-L~~Ip~--~l--~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 808 LIQLQIGSND-IRKVDE--KL--TPQLYILDIADNPNIS 841 (876)
T ss_dssp CCEEECCSSC-CCBCCS--CC--CSSSCEEECCSCTTCE
T ss_pred CCEEECCCCC-CCccCH--hh--cCCCCEEECCCCCCCc
Confidence 9999999996 477765 22 4799999999997543
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=4.2e-22 Score=232.95 Aligned_cols=364 Identities=16% Similarity=0.112 Sum_probs=212.4
Q ss_pred CCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC
Q 043332 483 GLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP 562 (897)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 562 (897)
+..+..+|.. .++++++|++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.++.+|
T Consensus 40 ~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 40 NRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116 (562)
T ss_dssp TSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCCCccCCCC--CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccC
Confidence 4455667754 3478899999999999888777888999999999998 677777677788999999999999999888
Q ss_pred cccccCcccceeecccccccc-CCc-chhccccCCEeeccCCcCcccCccccCCCCC--CEEeCCCCCC--CcCCCCccc
Q 043332 563 SSVSDLTNLRSLLLRYCLRLR-RVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENL--SYLYLYSLPL--KKFPTGILP 636 (897)
Q Consensus 563 ~~i~~l~~L~~L~L~~~~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~ 636 (897)
.. .+++|++|++++|.... ..| .++++++|++|++++|.+.. ..+..+.+| ++|++++|.+ ....+..+.
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCccccc
Confidence 76 89999999999985433 234 68999999999999998775 245555555 8899888876 433332222
Q ss_pred --------------------------CCcccCeEecccCc---hhhhhcHHHHHhhhcccceeEEEeccchhh--hhhhh
Q 043332 637 --------------------------RLRDLYKLKLSFGR---EALRETVEEAARLSNRLDTFEGHFSTLKDF--NIYVK 685 (897)
Q Consensus 637 --------------------------~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~--~~~~~ 685 (897)
++++|+.|+++.+. ......+..+..+++ |+.|++..+.+... .....
T Consensus 193 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~-L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT-LLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS-CEEEEEEEEEECHHHHHHHHH
T ss_pred ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc-ceEEEecCCcCcHHHHHHHHH
Confidence 45567777776321 011222334444554 55554444332211 00000
Q ss_pred ccCCCCceeeEEEeccc--cccccc----------------------------------------------------ccc
Q 043332 686 STDGRGSKNYCLLLSAS--DMRGIL----------------------------------------------------ITD 711 (897)
Q Consensus 686 ~~~~~~L~~l~~~~~~~--~~~~~~----------------------------------------------------~~~ 711 (897)
.....+|+.+.+..... .++..+ ...
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 00111233333321110 011100 013
Q ss_pred cccccceeeecccccCCCC-cccCccccceeEEeccCCcccccccCcccCCcc-ccccccccccEEEEecCCCCCCCChh
Q 043332 712 LEVDKSVSLMNCKICEREE-PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLV-NIGKFSHDLKVLSFVRCPNLKNLFSL 789 (897)
Q Consensus 712 ~~~l~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~~L~~L~l~~c~~l~~l~~~ 789 (897)
++.++.+++++|.+.+..+ .+..+++|+.|.++++. +..+ ..+| .++.++ +|+.|++++|.....++ .
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~-------~~~~~~~~~l~-~L~~L~l~~N~l~~~~~-~ 421 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNF-------FKVALMTKNMS-SLETLDVSLNSLNSHAY-D 421 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBT-------THHHHTTTTCT-TCCEEECTTSCCBSCCS-S
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCc-------ccchhhhcCCC-CCCEEECCCCcCCCccC-h
Confidence 3444455555554443222 23444555555555443 1100 0011 134455 66666666654322232 2
Q ss_pred hhhhccCCccEEEEeccccchhhcccccchhhhhhhcccccccccc-CccceeecccCcccccccCCCCcccCCCccEEE
Q 043332 790 QLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTL-PRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIE 868 (897)
Q Consensus 790 ~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~f-p~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~ 868 (897)
..+..+++|+.|++++|. ++..+ ...+ ++|+.|+++++ +++.++. ....+++|++|+
T Consensus 422 ~~~~~l~~L~~L~l~~n~-l~~~~------------------~~~l~~~L~~L~L~~N-~l~~ip~--~~~~l~~L~~L~ 479 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNM-LTGSV------------------FRCLPPKVKVLDLHNN-RIMSIPK--DVTHLQALQELN 479 (562)
T ss_dssp CCCCCCTTCCEEECCSSC-CCGGG------------------GSSCCTTCSEEECCSS-CCCCCCT--TTTSSCCCSEEE
T ss_pred hhhcCcccCCEEECCCCC-CCcch------------------hhhhcCcCCEEECCCC-cCcccCh--hhcCCCCCCEEE
Confidence 234455666666666642 22111 0123 58888988888 6777765 344678899999
Q ss_pred ecCCCCCccccCC-cccccC
Q 043332 869 VRGCPKLKRLSLS-LPLLDN 887 (897)
Q Consensus 869 i~~C~~L~~lp~~-~~~l~~ 887 (897)
+++| +++.+|.+ +..+.+
T Consensus 480 L~~N-~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 480 VASN-QLKSVPDGVFDRLTS 498 (562)
T ss_dssp CCSS-CCCCCCTTSTTTCTT
T ss_pred CCCC-CCCCCCHHHHhcCCC
Confidence 9988 67788876 554444
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.2e-22 Score=220.37 Aligned_cols=288 Identities=18% Similarity=0.240 Sum_probs=230.5
Q ss_pred CCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccc
Q 043332 487 QEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVS 566 (897)
Q Consensus 487 ~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~ 566 (897)
..++. ....+++++|++++|.+..++. +..+++|++|++++| .+..++. |.++++|++|++++|.++.+|. +.
T Consensus 57 ~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 57 ASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp CCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred ccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccCchh-hc
Confidence 34443 3456789999999999999876 679999999999999 6777763 7899999999999999998876 89
Q ss_pred cCcccceeeccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEec
Q 043332 567 DLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKL 646 (897)
Q Consensus 567 ~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 646 (897)
.+++|++|++++|.....++.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence 9999999999999888888889999999999999999988766 8899999999999999988876 689999999999
Q ss_pred ccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeeccccc
Q 043332 647 SFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKIC 726 (897)
Q Consensus 647 ~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 726 (897)
+. +...... .+..+++ |+.|+++.|.+...+.. ..++.++.+++++|.+.
T Consensus 207 ~~-n~l~~~~--~~~~~~~-L~~L~l~~n~l~~~~~~--------------------------~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 207 YV-NQITDIT--PVANMTR-LNSLKIGNNKITDLSPL--------------------------ANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CS-SCCCCCG--GGGGCTT-CCEEECCSSCCCCCGGG--------------------------TTCTTCCEEECCSSCCC
T ss_pred cc-CCCCCCc--hhhcCCc-CCEEEccCCccCCCcch--------------------------hcCCCCCEEECCCCccC
Confidence 83 3332222 2778888 99999998876654321 15566778888888765
Q ss_pred CCCCcccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEecc
Q 043332 727 EREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVC 806 (897)
Q Consensus 727 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 806 (897)
.. +.+..+++|+.|.+++|. ...++.+..++ +|+.|++++|. ++..++ ..+..+++|+.|++++|
T Consensus 257 ~~-~~~~~l~~L~~L~l~~n~-----------l~~~~~~~~l~-~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 257 DI-NAVKDLTKLKMLNVGSNQ-----------ISDISVLNNLS-QLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CC-GGGTTCTTCCEEECCSSC-----------CCCCGGGGGCT-TCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSS
T ss_pred CC-hhHhcCCCcCEEEccCCc-----------cCCChhhcCCC-CCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCC
Confidence 43 557788999999999885 33345567788 99999999996 444333 44678999999999997
Q ss_pred ccchhhcccccchhhhhhhccccccccccCccceeecccCc
Q 043332 807 FSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLP 847 (897)
Q Consensus 807 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 847 (897)
+ ++.+.. ...+|+|++|++++++
T Consensus 322 ~-l~~~~~-----------------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 H-ITDIRP-----------------LASLSKMDSADFANQV 344 (347)
T ss_dssp S-CCCCGG-----------------GGGCTTCSEESSSCC-
T ss_pred c-cccccC-----------------hhhhhccceeehhhhc
Confidence 4 555432 2258999999999886
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.1e-22 Score=240.71 Aligned_cols=175 Identities=19% Similarity=0.181 Sum_probs=138.9
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeecc
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLR 577 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 577 (897)
-+.++.++++++.+|.... +++++|++++| .+..++...|.++++|++|++++|.++.+ |..++++++|++|+|+
T Consensus 13 ~~~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP---SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCCCCC---CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3578888999999997653 78999999999 77888887789999999999999999977 5678999999999999
Q ss_pred ccccccCCc-chhccccCCEeeccCCcCcccC-ccccCCCCCCEEeCCCCCCCc--CCCCcccCCcccCeEecccCchhh
Q 043332 578 YCLRLRRVP-SVAKLLALHYLDLEATRIEEVP-EGMEMLENLSYLYLYSLPLKK--FPTGILPRLRDLYKLKLSFGREAL 653 (897)
Q Consensus 578 ~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 653 (897)
+|......| .++++++|++|++++|.+..+| ..++++++|++|++++|.+.. +|.. ++++++|++|+++ .+...
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls-~n~l~ 166 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLS-YNYIQ 166 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECC-SSCCC
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEcc-CCcce
Confidence 986444446 6999999999999999999877 679999999999999999875 4544 7999999999998 34433
Q ss_pred hhcHHHHHhhhc---ccceeEEEeccchh
Q 043332 654 RETVEEAARLSN---RLDTFEGHFSTLKD 679 (897)
Q Consensus 654 ~~~~~~l~~l~~---~L~~L~l~~~~l~~ 679 (897)
......++.+.+ .+..|+++.|.+..
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred ecChhhhhhhhccccccceeeccCCCcce
Confidence 333333444443 12356665555543
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=7.6e-23 Score=247.74 Aligned_cols=352 Identities=18% Similarity=0.072 Sum_probs=224.2
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC-cCCcccccCccccee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE-VLPSSVSDLTNLRSL 574 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L~~L 574 (897)
..++++|++++|.+....+. +..+++|++|++++| .+....+..|.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 34677777777776664444 566777777777777 344333334567777777777777765 33332 67777777
Q ss_pred eccccccccCCc-chhcc-ccCCEeeccCCcCc-ccCccccCCCCCCEEeCCCCCCC-cCCCCcccCCcccCeEecccCc
Q 043332 575 LLRYCLRLRRVP-SVAKL-LALHYLDLEATRIE-EVPEGMEMLENLSYLYLYSLPLK-KFPTGILPRLRDLYKLKLSFGR 650 (897)
Q Consensus 575 ~L~~~~~~~~lp-~~~~l-~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~ 650 (897)
++++|.....+| .+..+ ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|...++++++|++|+++ .+
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls-~n 353 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS-FN 353 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC-SS
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc-CC
Confidence 777765544666 45443 77777777777666 46667777777777777777765 5555545777777777776 33
Q ss_pred hhhhhcHHHHHhhh-cccceeEEEeccchh-hhhhhhccCCCCceeeEEEeccc--ccccccccccccccceeeeccccc
Q 043332 651 EALRETVEEAARLS-NRLDTFEGHFSTLKD-FNIYVKSTDGRGSKNYCLLLSAS--DMRGILITDLEVDKSVSLMNCKIC 726 (897)
Q Consensus 651 ~~~~~~~~~l~~l~-~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~l~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~ 726 (897)
......+..+..+. + |+.|+++.|.+.. .+.........+|+.+.+..+.. ..+..+. .++.++.+++++|.+.
T Consensus 354 ~l~~~~p~~l~~l~~~-L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 354 EFSGELPESLTNLSAS-LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLS 431 (768)
T ss_dssp EEEECCCTTHHHHTTT-CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEE
T ss_pred ccCccccHHHHhhhcC-CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCccc
Confidence 33334445556665 5 7777777665542 11111111133456555543322 1233333 6677888888888776
Q ss_pred CCCCc-ccCccccceeEEeccCCcccccccCcccCCcc-ccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEe
Q 043332 727 EREEP-IVLPEDVQFLQMFEVSDVASLNDVLPREQGLV-NIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVK 804 (897)
Q Consensus 727 ~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~ 804 (897)
+..+. +..+++|+.|.+++|.-.. .+| .++.++ +|++|++++|.....+|. .+.++++|+.|+++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~----------~~p~~~~~l~-~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEG----------EIPQELMYVK-TLETLILDFNDLTGEIPS--GLSNCTNLNWISLS 498 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCS----------CCCGGGGGCT-TCCEEECCSSCCCSCCCG--GGGGCTTCCEEECC
T ss_pred CcccHHHhcCCCCCEEECCCCcccC----------cCCHHHcCCC-CceEEEecCCcccCcCCH--HHhcCCCCCEEEcc
Confidence 55443 6677788888888775211 123 266777 899999999875545433 36688899999999
Q ss_pred ccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCCccccCCccc
Q 043332 805 VCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLKRLSLSLPL 884 (897)
Q Consensus 805 ~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~ 884 (897)
+|. +...+. .....+++|++|+|+++.-...++. ....+++|++|++++|+-...+|..+..
T Consensus 499 ~N~-l~~~~p---------------~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 499 NNR-LTGEIP---------------KWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp SSC-CCSCCC---------------GGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCc-cCCcCC---------------hHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 874 332221 1223589999999999975555554 4556889999999999877788877655
Q ss_pred c
Q 043332 885 L 885 (897)
Q Consensus 885 l 885 (897)
.
T Consensus 561 ~ 561 (768)
T 3rgz_A 561 Q 561 (768)
T ss_dssp T
T ss_pred c
Confidence 4
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=2.9e-22 Score=237.08 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=68.2
Q ss_pred ccccccceeeecccccCCCC-cccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCCCCCCh
Q 043332 711 DLEVDKSVSLMNCKICEREE-PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFS 788 (897)
Q Consensus 711 ~~~~l~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~ 788 (897)
.++.++.+++++|.+.+..+ .+..+++|+.|.++++.-... ..+. ++.++ +|+.|++++|.. ...++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~l~-~L~~L~l~~n~l-~~~~~ 442 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK---------DAQSPFQNLH-LLKVLNLSHSLL-DISSE 442 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC---------TTCCTTTTCT-TCCEEECTTCCC-BTTCT
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc---------ccchhhhCcc-cCCEEECCCCcc-CCcCH
Confidence 34445555555554433222 234445555555554431100 0111 44555 677777776643 22222
Q ss_pred hhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEE
Q 043332 789 LQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIE 868 (897)
Q Consensus 789 ~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~ 868 (897)
..+..+++|+.|++++|. +....... ......+++|+.|++++|. ++.+.. .....+++|++|+
T Consensus 443 -~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 443 -QLFDGLPALQHLNLQGNH-FPKGNIQK------------TNSLQTLGRLEILVLSFCD-LSSIDQ-HAFTSLKMMNHVD 506 (606)
T ss_dssp -TTTTTCTTCCEEECTTCB-CGGGEECS------------SCGGGGCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEE
T ss_pred -HHHhCCCCCCEEECCCCC-CCcccccc------------chhhccCCCccEEECCCCc-cCccCh-hhhccccCCCEEE
Confidence 234456677777777652 22211000 0011246667777776663 343322 1223356666777
Q ss_pred ecCCCCCccccCCccccc
Q 043332 869 VRGCPKLKRLSLSLPLLD 886 (897)
Q Consensus 869 i~~C~~L~~lp~~~~~l~ 886 (897)
+++|.-....|..++++.
T Consensus 507 Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp CCSSCCCGGGGGGGTTCC
T ss_pred CCCCccCcCChhHhCccc
Confidence 666643333344444443
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=7.9e-23 Score=247.59 Aligned_cols=176 Identities=26% Similarity=0.351 Sum_probs=76.8
Q ss_pred cccEEEccccccc-cCCCCCCCCCCCccEEEccCCCCcc-cCChhHhhCCCCccEEEecCCCCC-cCCcc-cccCcccce
Q 043332 498 NLERVSLMKNNIK-EIPSYMSPHCDILSTLLLQANGNLW-TIPECFFVHMHGLKVLNLSHTDIE-VLPSS-VSDLTNLRS 573 (897)
Q Consensus 498 ~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~-i~~l~~L~~ 573 (897)
++++|++++|.+. .+|...+..+++|++|++++| .+. .+|. .|.++++|++|++++|.++ .+|.. ++.+++|++
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 4555555555544 333333333455555555555 222 2222 2344555555555555544 44433 445555555
Q ss_pred eeccccccccCCc-chhccc-cCCEeeccCCcCc-ccCccccC--CCCCCEEeCCCCCCCcCCCCcccCCcccCeEeccc
Q 043332 574 LLLRYCLRLRRVP-SVAKLL-ALHYLDLEATRIE-EVPEGMEM--LENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSF 648 (897)
Q Consensus 574 L~L~~~~~~~~lp-~~~~l~-~L~~L~l~~~~l~-~lp~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 648 (897)
|++++|.....+| .+.++. +|++|++++|.+. .+|..+.. +++|++|++++|.+....+..++++++|++|+++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls- 426 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS- 426 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC-
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc-
Confidence 5555543333444 344444 4555555544443 23333333 4444444444444432222223444444444444
Q ss_pred CchhhhhcHHHHHhhhcccceeEEEeccc
Q 043332 649 GREALRETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 649 ~~~~~~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
.+......+..+..+++ |+.|+++.|.+
T Consensus 427 ~N~l~~~~p~~l~~l~~-L~~L~L~~n~l 454 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSK-LRDLKLWLNML 454 (768)
T ss_dssp SSEEESCCCGGGGGCTT-CCEEECCSSCC
T ss_pred CCcccCcccHHHhcCCC-CCEEECCCCcc
Confidence 22222222333444444 44444444433
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=244.03 Aligned_cols=358 Identities=18% Similarity=0.153 Sum_probs=236.0
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
.+..+..+|. .+.++++|++++|.+..+++..+.++++|++|++++|.....+++..|.++++|++|+|++|.+..+
T Consensus 12 s~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 12 RFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp SCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred cCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 3456677886 5678999999999999998888899999999999999777778777789999999999999999866
Q ss_pred -CcccccCcccceeeccccccccCCc-c--hhccccCCEeeccCCcCcccC--ccccCCCCCCEEeCCCCCCCcCCCCcc
Q 043332 562 -PSSVSDLTNLRSLLLRYCLRLRRVP-S--VAKLLALHYLDLEATRIEEVP--EGMEMLENLSYLYLYSLPLKKFPTGIL 635 (897)
Q Consensus 562 -p~~i~~l~~L~~L~L~~~~~~~~lp-~--~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~l 635 (897)
|..++++++|++|+|++|......| . ++++++|++|++++|.+..++ ..++++++|++|++++|.+....+..+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 8889999999999999986555455 3 899999999999999998753 569999999999999999888766666
Q ss_pred cCC--cccCeEecccCchhhhhcHHHHHh------hhcccceeEEEeccchhh-h-hhhhccCCCCceeeEEEecc----
Q 043332 636 PRL--RDLYKLKLSFGREALRETVEEAAR------LSNRLDTFEGHFSTLKDF-N-IYVKSTDGRGSKNYCLLLSA---- 701 (897)
Q Consensus 636 ~~l--~~L~~L~l~~~~~~~~~~~~~l~~------l~~~L~~L~l~~~~l~~~-~-~~~~~~~~~~L~~l~~~~~~---- 701 (897)
+.+ ++|+.|+++. +.........++. ... |+.|+++.|.+... . .........++..+.+....
T Consensus 169 ~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHHHCSSCCCEECC-SBSCCCCCCCCCSSSCTTTTCC-BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred ccccCCccceEECCC-CccccccccchhhcCCccccCc-eeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 776 7899999883 3322211111111 123 88888887754321 1 11111112233333332000
Q ss_pred ---cccc----cccc-cccccccceeeecccccCCCC-cccCccccceeEEeccCCcccccccCcccCCccccccccccc
Q 043332 702 ---SDMR----GILI-TDLEVDKSVSLMNCKICEREE-PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDL 772 (897)
Q Consensus 702 ---~~~~----~~~~-~~~~~l~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L 772 (897)
..+. ..+. ...+.++.++++++.+....+ .+..+++|+.|.++++.- ..+. ...++.++ +|
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~~--------~~~~~~l~-~L 316 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIA--------DEAFYGLD-NL 316 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC-CEEC--------TTTTTTCS-SC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC-CCCC--------hHHhcCCC-CC
Confidence 0000 0000 012567777777777654433 256677888888877641 1110 11245666 88
Q ss_pred cEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccc
Q 043332 773 KVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSF 852 (897)
Q Consensus 773 ~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~ 852 (897)
++|++++|. ++.+.+ ..+..+++|+.|++++| .+..+... ....+++|+.|+|+++. ++.+
T Consensus 317 ~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~---------------~~~~l~~L~~L~Ls~N~-l~~i 377 (844)
T 3j0a_A 317 QVLNLSYNL-LGELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQ---------------TFKFLEKLQTLDLRDNA-LTTI 377 (844)
T ss_dssp CEEEEESCC-CSCCCS-CSCSSCTTCCEEECCSC-CCCCCCSS---------------CSCSCCCCCEEEEETCC-SCCC
T ss_pred CEEECCCCC-CCccCH-HHhcCCCCCCEEECCCC-CCCccChh---------------hhcCCCCCCEEECCCCC-CCcc
Confidence 888888875 344322 23556778888888875 44443211 11246777777777763 4433
Q ss_pred cCCCCcccCCCccEEEecCCCCCccccC
Q 043332 853 CSNNGVLVCNSLQEIEVRGCPKLKRLSL 880 (897)
Q Consensus 853 ~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 880 (897)
.. +|+|+.|++++| +++.+|.
T Consensus 378 ~~------~~~L~~L~l~~N-~l~~l~~ 398 (844)
T 3j0a_A 378 HF------IPSIPDIFLSGN-KLVTLPK 398 (844)
T ss_dssp SS------CCSCSEEEEESC-CCCCCCC
T ss_pred cC------CCCcchhccCCC-Ccccccc
Confidence 22 556666666665 3334443
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.3e-22 Score=239.82 Aligned_cols=322 Identities=11% Similarity=0.075 Sum_probs=215.7
Q ss_pred Cccchh--ccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcc--cCChhHhhCC------CCccEEEecCCCC
Q 043332 489 FPVEQE--WKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLW--TIPECFFVHM------HGLKVLNLSHTDI 558 (897)
Q Consensus 489 ~p~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~l------~~Lr~L~L~~~~i 558 (897)
+|.... ...++++|++++|.+....+..+.++++|++|++++|..+. .+|..+ ..+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcC
Confidence 666655 67889999999998765544567799999999999995355 477765 444 8999999999999
Q ss_pred CcCCc--ccccCcccceeeccccccccCCcchhccccCCEeeccCCcCcccCccccCCCC-CCEEeCCCCCCCcCCCCcc
Q 043332 559 EVLPS--SVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLEN-LSYLYLYSLPLKKFPTGIL 635 (897)
Q Consensus 559 ~~lp~--~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~~~~~~~~l 635 (897)
+.+|. .++.+++|++|++++|.....+|.++.+++|++|++++|.+..+|..++.+++ |++|++++|.+..+|.. +
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~ 396 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI-F 396 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC-C
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh-h
Confidence 99999 89999999999999986554888999999999999999999999999999999 99999999999988875 4
Q ss_pred cCCc--ccCeEecccCchhhhhcHHHHH-------hhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEeccccccc
Q 043332 636 PRLR--DLYKLKLSFGREALRETVEEAA-------RLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRG 706 (897)
Q Consensus 636 ~~l~--~L~~L~l~~~~~~~~~~~~~l~-------~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 706 (897)
+.++ +|++|+++ .+......+..+. .+.+ |+.|+++.|.+..++....
T Consensus 397 ~~~~l~~L~~L~Ls-~N~l~~~~p~~l~~~~~~~~~~~~-L~~L~Ls~N~l~~lp~~~~--------------------- 453 (636)
T 4eco_A 397 DAKSVSVMSAIDFS-YNEIGSVDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELF--------------------- 453 (636)
T ss_dssp CTTCSSCEEEEECC-SSCTTTTTTCSSCTTCSSCCCCCC-EEEEECCSSCCCSCCTHHH---------------------
T ss_pred hhcccCccCEEECc-CCcCCCcchhhhcccccccccCCC-CCEEECcCCccCcCCHHHH---------------------
Confidence 6554 89999998 4444443334444 5567 8899998887765433221
Q ss_pred ccccccccccceeeecccccCCCCcc-c-------CccccceeEEeccCCcccccccCcccCCccc-cc--cccccccEE
Q 043332 707 ILITDLEVDKSVSLMNCKICEREEPI-V-------LPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IG--KFSHDLKVL 775 (897)
Q Consensus 707 ~~~~~~~~l~~l~l~~~~~~~~~~~l-~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~--~l~~~L~~L 775 (897)
..++.++.+++++|.+....... . .+++|+.|+++++. ...+|. +. .++ +|+.|
T Consensus 454 ---~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~lp~~~~~~~l~-~L~~L 518 (636)
T 4eco_A 454 ---STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-----------LTKLSDDFRATTLP-YLVGI 518 (636)
T ss_dssp ---HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-----------CCBCCGGGSTTTCT-TCCEE
T ss_pred ---ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-----------CCccChhhhhccCC-CcCEE
Confidence 12344555555555554221111 1 11266666666654 112332 22 555 66666
Q ss_pred EEecCCCCCCCChhhhhhccCCccEEEEecccc-----chhhcccccchhhhhhhccccccccccCccceeecccCcccc
Q 043332 776 SFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFS-----IEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFK 850 (897)
Q Consensus 776 ~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~-----l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~ 850 (897)
+|++|. ++.+|.. +.++++|+.|++++|.. +...+ +.....+++|+.|+|+++. ++
T Consensus 519 ~Ls~N~-l~~ip~~--~~~l~~L~~L~Ls~N~~ls~N~l~~~~---------------p~~l~~l~~L~~L~Ls~N~-l~ 579 (636)
T 4eco_A 519 DLSYNS-FSKFPTQ--PLNSSTLKGFGIRNQRDAQGNRTLREW---------------PEGITLCPSLTQLQIGSND-IR 579 (636)
T ss_dssp ECCSSC-CSSCCCG--GGGCSSCCEEECCSCBCTTCCBCCCCC---------------CTTGGGCSSCCEEECCSSC-CC
T ss_pred ECCCCC-CCCcChh--hhcCCCCCEEECCCCcccccCcccccC---------------hHHHhcCCCCCEEECCCCc-CC
Confidence 666654 3334322 33566666666654321 11110 0112246666666666664 35
Q ss_pred cccCCCCcccCCCccEEEecCCC
Q 043332 851 SFCSNNGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 851 ~~~~~~~~~~~p~L~~L~i~~C~ 873 (897)
.++. .. +++|++|++++|+
T Consensus 580 ~ip~--~~--~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 580 KVNE--KI--TPNISVLDIKDNP 598 (636)
T ss_dssp BCCS--CC--CTTCCEEECCSCT
T ss_pred ccCH--hH--hCcCCEEECcCCC
Confidence 5543 11 2566666666664
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.4e-22 Score=226.71 Aligned_cols=307 Identities=19% Similarity=0.167 Sum_probs=168.1
Q ss_pred CCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc
Q 043332 484 LRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS 563 (897)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 563 (897)
..+..+|.. .+.+++.|++++|.+..++...+..+++|++|++++| .+..+++..|.++++|++|+|++|.++.+|.
T Consensus 21 ~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 21 KRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 344455543 3345666666666666665555566666666666666 4555544445666666666666666665554
Q ss_pred c-cccCcccceeeccccccccCCc-chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcccCCcc
Q 043332 564 S-VSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGILPRLRD 640 (897)
Q Consensus 564 ~-i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 640 (897)
. +.++++|++|+|++|......| .+.++++|++|++++|.+..+ |..+..+++|++|++++|.+..++...+.++++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 3 4566666666666654333334 466666666666666665544 334566666666666666666655554556666
Q ss_pred cCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceee
Q 043332 641 LYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSL 720 (897)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l 720 (897)
|+.|+++ .+.........+..+++ |+.|+++.+.... ..+.... ....++.+++
T Consensus 178 L~~L~l~-~n~i~~~~~~~~~~l~~-L~~L~l~~~~~~~-----------------------~~~~~~~-~~~~L~~L~l 231 (477)
T 2id5_A 178 LIVLRLR-HLNINAIRDYSFKRLYR-LKVLEISHWPYLD-----------------------TMTPNCL-YGLNLTSLSI 231 (477)
T ss_dssp CCEEEEE-SCCCCEECTTCSCSCTT-CCEEEEECCTTCC-----------------------EECTTTT-TTCCCSEEEE
T ss_pred CcEEeCC-CCcCcEeChhhcccCcc-cceeeCCCCcccc-----------------------ccCcccc-cCccccEEEC
Confidence 6666665 22222222223444455 5555555432210 0011111 2235677777
Q ss_pred ecccccCCCC-cccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCcc
Q 043332 721 MNCKICEREE-PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLE 799 (897)
Q Consensus 721 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~ 799 (897)
++|.+..... .+..+++|+.|+++++. +..+. ...+..++ +|+.|+|++|. ++.+.+. .+.++++|+
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~l~-~L~~L~L~~n~-l~~~~~~-~~~~l~~L~ 299 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE--------GSMLHELL-RLQEIQLVGGQ-LAVVEPY-AFRGLNYLR 299 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEEC--------TTSCTTCT-TCCEEECCSSC-CSEECTT-TBTTCTTCC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCc-CCccC--------hhhccccc-cCCEEECCCCc-cceECHH-HhcCcccCC
Confidence 7776654332 25667778888777764 11110 11145566 78888887764 4444332 355677888
Q ss_pred EEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCc
Q 043332 800 VLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLP 847 (897)
Q Consensus 800 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 847 (897)
.|++++| .++.+... ....+++|+.|+|.++|
T Consensus 300 ~L~L~~N-~l~~~~~~---------------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 300 VLNVSGN-QLTTLEES---------------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSS-CCSCCCGG---------------GBSCGGGCCEEECCSSC
T ss_pred EEECCCC-cCceeCHh---------------HcCCCcccCEEEccCCC
Confidence 8888775 45444211 11246778888877765
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4.7e-22 Score=238.54 Aligned_cols=312 Identities=19% Similarity=0.145 Sum_probs=199.9
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
.+..+..+|.. .+.++++|++++|.+..++...+..+++|++|++++| .+..+++..|.++++|++|++++|.++.+
T Consensus 12 s~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 34456677765 3478999999999999998887889999999999998 67777777789999999999999999988
Q ss_pred Cc-ccccCcccceeeccccccccCCc--chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCccc-
Q 043332 562 PS-SVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGILP- 636 (897)
Q Consensus 562 p~-~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~- 636 (897)
|. .++++++|++|++++|. ++.+| .++++++|++|++++|.+... |..++++++|++|++++|.+..+++..++
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 87 58999999999999985 45555 599999999999999988865 45688999999999999988887765433
Q ss_pred -CCcccCeEecccCchhhhhcHHHHHhhhcccceeE---------------------------EEeccchhhhh-hhhcc
Q 043332 637 -RLRDLYKLKLSFGREALRETVEEAARLSNRLDTFE---------------------------GHFSTLKDFNI-YVKST 687 (897)
Q Consensus 637 -~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~---------------------------l~~~~l~~~~~-~~~~~ 687 (897)
.+++|++|+++. +.........+..+.+ |+.|. ++.|.+..... .....
T Consensus 168 ~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 168 FANSSLKKLELSS-NQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GTTCEESEEECTT-CCCCCBCTTGGGGSSE-ECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred cccccccEEECCC-CcccccChhhhhhhhh-hhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 457899998873 3333333333444444 44444 44433322111 01000
Q ss_pred CCCCceeeEEEecccc-cccccccccccccceeeecccccCCCC-cccCccccceeEEeccCCcccccccCcccCCcc--
Q 043332 688 DGRGSKNYCLLLSASD-MRGILITDLEVDKSVSLMNCKICEREE-PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLV-- 763 (897)
Q Consensus 688 ~~~~L~~l~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-- 763 (897)
...+|+.+.+..+... .+......++.++.++++++.+.+..+ .+..+++|+.|.+.++.....+. ...+|
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~lp~i 320 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-----LASLPKI 320 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----------CCEE
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc-----ccccccc
Confidence 1112444443322211 111111244556666666665544332 24555666666665432111000 01122
Q ss_pred ---ccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccc
Q 043332 764 ---NIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCF 807 (897)
Q Consensus 764 ---~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 807 (897)
.++.++ +|++|++++|. +..+++ ..+.++++|++|++++|.
T Consensus 321 ~~~~~~~l~-~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 321 DDFSFQWLK-CLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CTTTTTTCT-TCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCB
T ss_pred ChhhcccCC-CCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCc
Confidence 244566 78888887764 344332 235567777777777653
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4e-22 Score=221.94 Aligned_cols=302 Identities=14% Similarity=0.161 Sum_probs=189.3
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~ 575 (897)
.+++++++.++.+..+|...+..+++|++|++++| .+..++...|..+++|++|++++|.++.+| ..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666666655556666666666666 455555555566666666666666666553 3356666666666
Q ss_pred ccccccccCCc-c-hhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchh
Q 043332 576 LRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 576 L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
+++| .++.+| . +.++++|++|++++|.+..++. .++.+++|++|++++|.+..++ ++.+++|++|+++. +..
T Consensus 124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~-n~l 198 (390)
T 3o6n_A 124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY-NLL 198 (390)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCS-SCC
T ss_pred CCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccc-ccc
Confidence 6665 344555 3 4666666666666666665533 3666666666666666666553 34556666666652 111
Q ss_pred hhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcc
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPI 732 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l 732 (897)
.. +....+ |+.|+++.|.+..++. ...+.++.++++++.+... +.+
T Consensus 199 ~~-----~~~~~~-L~~L~l~~n~l~~~~~---------------------------~~~~~L~~L~l~~n~l~~~-~~l 244 (390)
T 3o6n_A 199 ST-----LAIPIA-VEELDASHNSINVVRG---------------------------PVNVELTILKLQHNNLTDT-AWL 244 (390)
T ss_dssp SE-----EECCSS-CSEEECCSSCCCEEEC---------------------------CCCSSCCEEECCSSCCCCC-GGG
T ss_pred cc-----cCCCCc-ceEEECCCCeeeeccc---------------------------cccccccEEECCCCCCccc-HHH
Confidence 11 111223 5555555544332110 1235678888888887653 567
Q ss_pred cCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhh
Q 043332 733 VLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEI 812 (897)
Q Consensus 733 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i 812 (897)
..+++|+.|+++++. +..+ ....++.++ +|++|++++|. ++.++.. ...+++|+.|++++| .++.+
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~--------~~~~~~~l~-~L~~L~L~~n~-l~~~~~~--~~~l~~L~~L~L~~n-~l~~~ 310 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNE-LEKI--------MYHPFVKMQ-RLERLYISNNR-LVALNLY--GQPIPTLKVLDLSHN-HLLHV 310 (390)
T ss_dssp GGCTTCSEEECCSSC-CCEE--------ESGGGTTCS-SCCEEECCSSC-CCEEECS--SSCCTTCCEEECCSS-CCCCC
T ss_pred cCCCCccEEECCCCc-CCCc--------ChhHccccc-cCCEEECCCCc-CcccCcc--cCCCCCCCEEECCCC-cceec
Confidence 788999999999885 1111 012366778 99999999975 5554332 356889999999997 55544
Q ss_pred cccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCC
Q 043332 813 VVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 873 (897)
+. ....+++|+.|++++++ ++.+. ...+++|++|++++++
T Consensus 311 ~~----------------~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 311 ER----------------NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp GG----------------GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred Cc----------------cccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 31 12258999999999986 56653 3447899999999986
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=230.06 Aligned_cols=311 Identities=17% Similarity=0.183 Sum_probs=238.9
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeeccc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 578 (897)
+.++.+++.+..+|.... +++++|++++| .+..++...|.++++|++|+|++|.++.+ |..+.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~ip~~~~---~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP---TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSCCC---TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC---CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 467777888888887543 68999999999 78888777789999999999999999866 77899999999999999
Q ss_pred cccccCCc--chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 579 CLRLRRVP--SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 579 ~~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
| .++.+| .+.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+++..++++++|++|+++ .+.....
T Consensus 90 n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~ 167 (477)
T 2id5_A 90 N-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE-KCNLTSI 167 (477)
T ss_dssp S-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE-SCCCSSC
T ss_pred C-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC-CCcCccc
Confidence 7 566777 389999999999999999875 5579999999999999999998888778999999999998 4555555
Q ss_pred cHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCc-ccC
Q 043332 656 TVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEP-IVL 734 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-l~~ 734 (897)
....+..+++ |+.|+++.|.+..+... ....++.++.+++++|...+..+. ...
T Consensus 168 ~~~~l~~l~~-L~~L~l~~n~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 168 PTEALSHLHG-LIVLRLRHLNINAIRDY------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp CHHHHTTCTT-CCEEEEESCCCCEECTT------------------------CSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred ChhHhcccCC-CcEEeCCCCcCcEeChh------------------------hcccCcccceeeCCCCccccccCccccc
Confidence 5677889999 99999998876543211 011556678888888765443332 334
Q ss_pred ccccceeEEeccCCcccccccCcccCCcc--ccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhh
Q 043332 735 PEDVQFLQMFEVSDVASLNDVLPREQGLV--NIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEI 812 (897)
Q Consensus 735 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~--~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i 812 (897)
..+|+.|.++++. ...+| .+..++ +|+.|+|++|. ++.+++ ..+..+++|+.|++++| .+..+
T Consensus 223 ~~~L~~L~l~~n~-----------l~~~~~~~~~~l~-~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~ 287 (477)
T 2id5_A 223 GLNLTSLSITHCN-----------LTAVPYLAVRHLV-YLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGG-QLAVV 287 (477)
T ss_dssp TCCCSEEEEESSC-----------CCSCCHHHHTTCT-TCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSS-CCSEE
T ss_pred CccccEEECcCCc-----------ccccCHHHhcCcc-ccCeeECCCCc-CCccCh-hhccccccCCEEECCCC-ccceE
Confidence 4589999999885 23344 266788 99999999986 555543 34678899999999996 45544
Q ss_pred cccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCC
Q 043332 813 VVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 873 (897)
... ....+++|+.|+|+++ +++.+.... ...+++|++|++.++|
T Consensus 288 ~~~---------------~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 288 EPY---------------AFRGLNYLRVLNVSGN-QLTTLEESV-FHSVGNLETLILDSNP 331 (477)
T ss_dssp CTT---------------TBTTCTTCCEEECCSS-CCSCCCGGG-BSCGGGCCEEECCSSC
T ss_pred CHH---------------HhcCcccCCEEECCCC-cCceeCHhH-cCCCcccCEEEccCCC
Confidence 211 2225899999999988 466655432 1236789999998875
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=235.23 Aligned_cols=362 Identities=17% Similarity=0.157 Sum_probs=225.6
Q ss_pred hccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccc
Q 043332 494 EWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLR 572 (897)
Q Consensus 494 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~ 572 (897)
....++++|++++|.+..+++..+.++++|++|++++| .+..+++..|.++++|++|++++|.++.+|. .++.+++|+
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 34568999999999999998888899999999999999 6778887778999999999999999998876 689999999
Q ss_pred eeecccccccc-CCc-chhccccCCEeeccCCcCcccC-ccccCCCCC----CEEeCCCCCCCcCCCCcccCCcccCeEe
Q 043332 573 SLLLRYCLRLR-RVP-SVAKLLALHYLDLEATRIEEVP-EGMEMLENL----SYLYLYSLPLKKFPTGILPRLRDLYKLK 645 (897)
Q Consensus 573 ~L~L~~~~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 645 (897)
+|++++|.... .+| .++++++|++|++++|.+..++ ..++.+.+| ++|++++|.+..++++.+..+ +|+.|+
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~ 206 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEe
Confidence 99999985443 467 6999999999999999998765 568888888 899999999988887765554 677777
Q ss_pred cccCc---------------------------------------------------------hhhhhcHHHHHhhhcccc
Q 043332 646 LSFGR---------------------------------------------------------EALRETVEEAARLSNRLD 668 (897)
Q Consensus 646 l~~~~---------------------------------------------------------~~~~~~~~~l~~l~~~L~ 668 (897)
++.+. .........+..+++ |+
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~-L~ 285 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VS 285 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT-CS
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc-cc
Confidence 65210 000111233455667 88
Q ss_pred eeEEEeccchhhhhhhhcc------------------CCCCceeeEEEecccccccccccccccccceeeecccccCCC-
Q 043332 669 TFEGHFSTLKDFNIYVKST------------------DGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICERE- 729 (897)
Q Consensus 669 ~L~l~~~~l~~~~~~~~~~------------------~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~- 729 (897)
.|+++.+.+..++...... ...+|+.+.+..+........ ..++.++.+++++|.+....
T Consensus 286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEE
T ss_pred EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccc
Confidence 8888777665544332211 111233333322111100000 25566777777777654332
Q ss_pred --CcccCccccceeEEeccCCcccccc---cCc---------ccCCc-c--ccccccccccEEEEecCCCCCCCChhhhh
Q 043332 730 --EPIVLPEDVQFLQMFEVSDVASLND---VLP---------REQGL-V--NIGKFSHDLKVLSFVRCPNLKNLFSLQLL 792 (897)
Q Consensus 730 --~~l~~~~~L~~L~l~~~~~~~~~~~---~~~---------~~~~l-~--~~~~l~~~L~~L~l~~c~~l~~l~~~~~l 792 (897)
..+..+++|+.|.+++|.-...... ... ..... + .+..++ +|+.|++++|...... + ..+
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~-~~~ 441 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAF-N-GIF 441 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECC-T-TTT
T ss_pred ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccc-h-hhh
Confidence 1245566777777776641110000 000 00001 1 134455 6666666666432222 1 224
Q ss_pred hccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCC
Q 043332 793 PALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGC 872 (897)
Q Consensus 793 ~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C 872 (897)
..+++|+.|++++|.-....+ +.....+++|+.|++++|. ++.+.. .....+++|++|++++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~---------------p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFL---------------PDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEE---------------CSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS
T ss_pred hcCCcCcEEECcCCcCccccc---------------hhhhhcccCCCEEECCCCc-cccCCh-hhhhcccCCCEEeCCCC
Confidence 456666666666653111111 0112246777777777763 444322 12234667777777777
Q ss_pred CCCccccC
Q 043332 873 PKLKRLSL 880 (897)
Q Consensus 873 ~~L~~lp~ 880 (897)
+++.+|.
T Consensus 505 -~l~~~~~ 511 (570)
T 2z63_A 505 -QLKSVPD 511 (570)
T ss_dssp -CCSCCCT
T ss_pred -cCCCCCH
Confidence 4555543
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2e-22 Score=224.37 Aligned_cols=290 Identities=19% Similarity=0.167 Sum_probs=221.7
Q ss_pred CcCCCccc-hhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc
Q 043332 485 RLQEFPVE-QEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS 563 (897)
Q Consensus 485 ~~~~~p~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 563 (897)
.+..+|.. ....++++.|++++|.+..++...+..+++|++|++++| .+..+++..|.++++|++|++++|.++.+|.
T Consensus 56 ~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 56 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 34556654 244578999999999999998888899999999999999 6888888878999999999999999999988
Q ss_pred cc-ccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCccc
Q 043332 564 SV-SDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDL 641 (897)
Q Consensus 564 ~i-~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 641 (897)
.+ ..+++|++|++++|......| .+.++++|++|++++|.++.++ ++.+++|++|++++|.+..++ ..++|
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~-----~~~~L 207 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA-----IPIAV 207 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEE-----CCSSC
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccC-----CCCcc
Confidence 74 899999999999985444444 5999999999999999998874 677899999999999887653 34579
Q ss_pred CeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeee
Q 043332 642 YKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLM 721 (897)
Q Consensus 642 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~ 721 (897)
++|+++. +....... ...++ |+.|+++.|.+...+. +. .++.++.++++
T Consensus 208 ~~L~l~~-n~l~~~~~---~~~~~-L~~L~l~~n~l~~~~~-------------------------l~-~l~~L~~L~Ls 256 (390)
T 3o6n_A 208 EELDASH-NSINVVRG---PVNVE-LTILKLQHNNLTDTAW-------------------------LL-NYPGLVEVDLS 256 (390)
T ss_dssp SEEECCS-SCCCEEEC---CCCSS-CCEEECCSSCCCCCGG-------------------------GG-GCTTCSEEECC
T ss_pred eEEECCC-Ceeeeccc---ccccc-ccEEECCCCCCcccHH-------------------------Hc-CCCCccEEECC
Confidence 9999983 32221111 12355 9999998887654311 11 56678888888
Q ss_pred cccccCCCC-cccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCCCCCChhhhhhccCCcc
Q 043332 722 NCKICEREE-PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLE 799 (897)
Q Consensus 722 ~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~ 799 (897)
++.+.+..+ .+..+++|+.|.++++. ...++. ...++ +|+.|++++|. ++.+++. +..+++|+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------l~~~~~~~~~l~-~L~~L~L~~n~-l~~~~~~--~~~l~~L~ 321 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNR-----------LVALNLYGQPIP-TLKVLDLSHNH-LLHVERN--QPQFDRLE 321 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSC-----------CCEEECSSSCCT-TCCEEECCSSC-CCCCGGG--HHHHTTCS
T ss_pred CCcCCCcChhHccccccCCEEECCCCc-----------CcccCcccCCCC-CCCEEECCCCc-ceecCcc--ccccCcCC
Confidence 887765433 36778999999999875 222332 45677 99999999985 5565443 56788999
Q ss_pred EEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCc
Q 043332 800 VLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLP 847 (897)
Q Consensus 800 ~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 847 (897)
.|++++| .++.+. ...+++|+.|+++++|
T Consensus 322 ~L~L~~N-~i~~~~------------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 322 NLYLDHN-SIVTLK------------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EEECCSS-CCCCCC------------------CCTTCCCSEEECCSSC
T ss_pred EEECCCC-ccceeC------------------chhhccCCEEEcCCCC
Confidence 9999996 454442 2258999999999876
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=227.62 Aligned_cols=344 Identities=15% Similarity=0.107 Sum_probs=226.0
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeeccc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 578 (897)
+++++++|.++.+|.... ++|++|++++| .+..+++..|.++++|++|++++|.++.+ |..++.+++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 679999999999997654 89999999999 78888877789999999999999999976 77899999999999999
Q ss_pred cccccCCcchhccccCCEeeccCCcCcc--cCccccCCCCCCEEeCCCCCCCcCCCCcccCCccc--CeEecccCchh--
Q 043332 579 CLRLRRVPSVAKLLALHYLDLEATRIEE--VPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDL--YKLKLSFGREA-- 652 (897)
Q Consensus 579 ~~~~~~lp~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~-- 652 (897)
| .++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+... .++.+++| ++|+++. +..
T Consensus 79 N-~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~-n~l~~ 152 (520)
T 2z7x_B 79 N-KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVL-GETYG 152 (520)
T ss_dssp S-CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEE-CTTTT
T ss_pred C-ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeec-ccccc
Confidence 8 56788844 89999999999999986 578999999999999999998763 25777888 9999883 222
Q ss_pred hhhcHHHHH--------------------------hhhcccceeEEEecc-------chh-hh-----------------
Q 043332 653 LRETVEEAA--------------------------RLSNRLDTFEGHFST-------LKD-FN----------------- 681 (897)
Q Consensus 653 ~~~~~~~l~--------------------------~l~~~L~~L~l~~~~-------l~~-~~----------------- 681 (897)
....+..+. .+++ |+.|+++.|. +.. ++
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN-LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSE-EEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccc-eeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 122222222 3555 7777777654 111 00
Q ss_pred -------hhhhccCCCCceeeEEEeccc--ccccccc----cccccccceeeecccccCCCC------------------
Q 043332 682 -------IYVKSTDGRGSKNYCLLLSAS--DMRGILI----TDLEVDKSVSLMNCKICEREE------------------ 730 (897)
Q Consensus 682 -------~~~~~~~~~~L~~l~~~~~~~--~~~~~~~----~~~~~l~~l~l~~~~~~~~~~------------------ 730 (897)
.........+|+.+.+..... ..+..+. ..++.++.+++..+.+ ..+
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 000000112455565543321 2333321 2455555566655554 111
Q ss_pred ---------cccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChh-hhhhccCCccE
Q 043332 731 ---------PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSL-QLLPALQNLEV 800 (897)
Q Consensus 731 ---------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~-~~l~~L~~L~~ 800 (897)
....+++|+.|+++++.-.. .....++.++ +|+.|++++|. ++.++.. ..+..+++|+.
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~-~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTD---------TVFENCGHLT-ELETLILQMNQ-LKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCT---------TTTTTCCCCS-SCCEEECCSSC-CCBHHHHHHHHTTCTTCCE
T ss_pred CCCccccccchhhCCcccEEEeECCccCh---------hhhhhhccCC-CCCEEEccCCc-cCccccchHHHhhCCCCCE
Confidence 01344555666665553111 0022356677 88888888775 3332221 23557778888
Q ss_pred EEEeccccchh-hcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCCcccc
Q 043332 801 LEVKVCFSIEE-IVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLKRLS 879 (897)
Q Consensus 801 L~l~~c~~l~~-i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp 879 (897)
|++++| .+.. +... ....+++|+.|+++++.--..+.. .. .++|++|++++| +++.+|
T Consensus 379 L~Ls~N-~l~~~l~~~---------------~~~~l~~L~~L~Ls~N~l~~~~~~--~l--~~~L~~L~Ls~N-~l~~ip 437 (520)
T 2z7x_B 379 LDISQN-SVSYDEKKG---------------DCSWTKSLLSLNMSSNILTDTIFR--CL--PPRIKVLDLHSN-KIKSIP 437 (520)
T ss_dssp EECCSS-CCBCCGGGC---------------SCCCCTTCCEEECCSSCCCGGGGG--SC--CTTCCEEECCSS-CCCCCC
T ss_pred EECCCC-cCCcccccc---------------hhccCccCCEEECcCCCCCcchhh--hh--cccCCEEECCCC-cccccc
Confidence 888875 3333 3210 122478899999988853333322 11 168999999999 677888
Q ss_pred CCcccccCC
Q 043332 880 LSLPLLDNG 888 (897)
Q Consensus 880 ~~~~~l~~~ 888 (897)
.++..+.++
T Consensus 438 ~~~~~l~~L 446 (520)
T 2z7x_B 438 KQVVKLEAL 446 (520)
T ss_dssp GGGGGCTTC
T ss_pred hhhhcCCCC
Confidence 876655553
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.4e-21 Score=228.20 Aligned_cols=132 Identities=22% Similarity=0.259 Sum_probs=109.7
Q ss_pred hhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc--CCcccccCcc
Q 043332 493 QEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV--LPSSVSDLTN 570 (897)
Q Consensus 493 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~l~~ 570 (897)
.....++++|++++|.+..+++..+..+++|++|++++| .+..++...|.++++|++|++++|.++. .|..++++++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 344578999999999999998888889999999999999 7888888878999999999999999984 4678999999
Q ss_pred cceeeccccccccCCc--chhccccCCEeeccCCcCcc-cCccccCCCCCCEEeCCCC
Q 043332 571 LRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEE-VPEGMEMLENLSYLYLYSL 625 (897)
Q Consensus 571 L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~ 625 (897)
|++|++++|..+..+| .+.++++|++|++++|.+.. .|..++.+++|++|++++|
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999999997677776 59999999999999998875 5666655444444444333
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=3.5e-21 Score=231.01 Aligned_cols=308 Identities=17% Similarity=0.117 Sum_probs=167.2
Q ss_pred hccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccc
Q 043332 494 EWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLR 572 (897)
Q Consensus 494 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~ 572 (897)
....++++|++++|.+..+++..+..+++|++|++++| .+..+|...|.++++|++|++++|.++.+| ..++++++|+
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 33456777777777777666666666777777777776 566666665677777777777777776655 4567777777
Q ss_pred eeeccccccccCCc-chhccccCCEeeccCCcCcccCcc-c--cCCCCCCEEeCCCCCCCcCCCCcccCCcc--------
Q 043332 573 SLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEG-M--EMLENLSYLYLYSLPLKKFPTGILPRLRD-------- 640 (897)
Q Consensus 573 ~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-~--~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-------- 640 (897)
+|++++|......| .++++++|++|++++|.++.++.. + ..+++|++|++++|.+..+++..++.+.+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 77777764433344 466777777777777766655443 2 24466666666666666555544444433
Q ss_pred ---------------------------------------------cCeEecccCchhhhhcHHHHHhhhcccceeEEEec
Q 043332 641 ---------------------------------------------LYKLKLSFGREALRETVEEAARLSNRLDTFEGHFS 675 (897)
Q Consensus 641 ---------------------------------------------L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 675 (897)
|++|+++ .+.........++.+++ |+.|+++.|
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~-L~~L~L~~n 282 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS-YNNLNVVGNDSFAWLPQ-LEYFFLEYN 282 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT-TSCCCEECTTTTTTCTT-CCEEECCSC
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC-CCCcCccCcccccCccc-ccEeeCCCC
Confidence 4444443 11122222223344444 555555544
Q ss_pred cchhhhhhhhccCCCCceeeEEEeccc-------cccc---ccccccccccceeeecccccCCCCc-ccCccccceeEEe
Q 043332 676 TLKDFNIYVKSTDGRGSKNYCLLLSAS-------DMRG---ILITDLEVDKSVSLMNCKICEREEP-IVLPEDVQFLQMF 744 (897)
Q Consensus 676 ~l~~~~~~~~~~~~~~L~~l~~~~~~~-------~~~~---~~~~~~~~l~~l~l~~~~~~~~~~~-l~~~~~L~~L~l~ 744 (897)
.+...... ......+|+.+.+..... .++. .....++.++.+++++|.+.+..+. +..+++|+.|.++
T Consensus 283 ~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 283 NIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CBSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred ccCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 43322110 001122344443321100 0111 0112556777888888777654433 6677888888887
Q ss_pred ccCC-ccccccc---------------C-cccCCc-c-ccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEec
Q 043332 745 EVSD-VASLNDV---------------L-PREQGL-V-NIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKV 805 (897)
Q Consensus 745 ~~~~-~~~~~~~---------------~-~~~~~l-~-~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~ 805 (897)
++.. ...+... . .....+ | .+..++ +|+.|++++|.....+++ ..+.++++|+.|++++
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSY 439 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCEEeCCCCcCccccCc-ccccCcccccEEecCC
Confidence 7631 1111100 0 000111 1 245566 788888887754333332 2355677788888877
Q ss_pred cc
Q 043332 806 CF 807 (897)
Q Consensus 806 c~ 807 (897)
|.
T Consensus 440 n~ 441 (680)
T 1ziw_A 440 NK 441 (680)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.5e-22 Score=234.95 Aligned_cols=300 Identities=18% Similarity=0.166 Sum_probs=208.9
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~ 575 (897)
.+++.+++.+|.+..+|...+..+++|++|++++| .+..++...|..+++|++|+|++|.++.+|.. ++.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788888888888888877778888999999888 67777776678889999999999988877554 68889999999
Q ss_pred ccccccccCCc-c-hhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchh
Q 043332 576 LRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 576 L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
|++| .++.+| . ++++++|++|++++|.+..+|. .++.+++|++|++++|.+..++ ++.+++|+.|+++. +..
T Consensus 130 L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~-n~l 204 (597)
T 3oja_B 130 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY-NLL 204 (597)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS-SCC
T ss_pred eeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc-Ccc
Confidence 9987 456666 4 6888999999999988887654 5888889999999988888775 46678888888872 222
Q ss_pred hhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCC-c
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREE-P 731 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~ 731 (897)
.. +....+ |+.|+++.|.+..++... ..+|+.|.+..+....+.++. .++.|+.|++++|.+.+..+ .
T Consensus 205 ~~-----l~~~~~-L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~~~l~-~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 ST-----LAIPIA-VEELDASHNSINVVRGPV----NVELTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SE-----EECCTT-CSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCCGGGG-GCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----ccCCch-hheeeccCCccccccccc----CCCCCEEECCCCCCCCChhhc-cCCCCCEEECCCCccCCCCHHH
Confidence 21 223345 888888887766543321 235666666554443333333 66777777877777655433 3
Q ss_pred ccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccch
Q 043332 732 IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIE 810 (897)
Q Consensus 732 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~ 810 (897)
+..+++|+.|.++++. ...+|. .+.+| +|+.|+|++|. +..+|+. +..+++|+.|++++| .+.
T Consensus 274 ~~~l~~L~~L~Ls~N~-----------l~~l~~~~~~l~-~L~~L~Ls~N~-l~~i~~~--~~~l~~L~~L~L~~N-~l~ 337 (597)
T 3oja_B 274 FVKMQRLERLYISNNR-----------LVALNLYGQPIP-TLKVLDLSHNH-LLHVERN--QPQFDRLENLYLDHN-SIV 337 (597)
T ss_dssp GTTCSSCCEEECTTSC-----------CCEEECSSSCCT-TCCEEECCSSC-CCCCGGG--HHHHTTCSEEECCSS-CCC
T ss_pred hcCccCCCEEECCCCC-----------CCCCCcccccCC-CCcEEECCCCC-CCccCcc--cccCCCCCEEECCCC-CCC
Confidence 6667777888777764 222232 34566 78888888775 4444432 456778888888875 333
Q ss_pred hhcccccchhhhhhhccccccccccCccceeecccCc
Q 043332 811 EIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLP 847 (897)
Q Consensus 811 ~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 847 (897)
.+. ...+|+|+.|+|+++|
T Consensus 338 ~~~------------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 338 TLK------------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCC------------------CCTTCCCSEEECCSSC
T ss_pred CcC------------------hhhcCCCCEEEeeCCC
Confidence 321 1247778888887765
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.8e-21 Score=220.01 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=132.5
Q ss_pred ccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCccccee
Q 043332 495 WKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSL 574 (897)
Q Consensus 495 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 574 (897)
...++++|++++|.+..+| .+..+++|++|++++| .+..+| +..+++|++|++++|.++.+| ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 3467899999999988886 3568899999999998 677775 588899999999999998875 8889999999
Q ss_pred eccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCC-CCcCCCCcccCCcccCeEecccCchhh
Q 043332 575 LLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLP-LKKFPTGILPRLRDLYKLKLSFGREAL 653 (897)
Q Consensus 575 ~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 653 (897)
++++| .++.+| ++.+++|++|++++|.++.+| ++++++|++|++++|. +..++ ++.+++|++|+++ .+...
T Consensus 112 ~L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls-~n~l~ 183 (457)
T 3bz5_A 112 NCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS-FNKIT 183 (457)
T ss_dssp ECCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECC-SSCCC
T ss_pred ECCCC-cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECC-CCccc
Confidence 99997 455666 888899999999999888875 8888999999999884 55552 5788899999988 33333
Q ss_pred hhcHHHHHhhhcccceeEEEeccchhh
Q 043332 654 RETVEEAARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~l~~~~l~~~ 680 (897)
... +..+++ |+.|+++.|.+..+
T Consensus 184 ~l~---l~~l~~-L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 184 ELD---VSQNKL-LNRLNCDTNNITKL 206 (457)
T ss_dssp CCC---CTTCTT-CCEEECCSSCCSCC
T ss_pred eec---cccCCC-CCEEECcCCcCCee
Confidence 322 667777 88888888776553
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.7e-21 Score=220.27 Aligned_cols=297 Identities=14% Similarity=0.172 Sum_probs=209.9
Q ss_pred CCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCcchhccccCCE
Q 043332 517 SPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHY 596 (897)
Q Consensus 517 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~ 596 (897)
+..+++|++|++++| .+..+|. +..+++|++|++++|.++.+| ++.+++|++|++++|. ++.+| ++++++|++
T Consensus 38 ~~~l~~L~~L~Ls~n-~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS-SITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSS-CCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCE
T ss_pred hhHcCCCCEEEccCC-CcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCE
Confidence 346789999999999 6777773 689999999999999999886 8999999999999984 66665 889999999
Q ss_pred eeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEecc
Q 043332 597 LDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFST 676 (897)
Q Consensus 597 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 676 (897)
|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|+++.+...... .+..+++ |+.|+++.|.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~-L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQ-LTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTT-CCEEECCSSC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCc-CCEEECCCCc
Confidence 999999999886 899999999999999999875 688999999999843222221 4667888 9999999998
Q ss_pred chhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccccceeEEeccCCcccccccC
Q 043332 677 LKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLNDVL 756 (897)
Q Consensus 677 l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 756 (897)
+..++ ......|+.+.+..+...... ...++.++.+++++|.+.+ .+ +..+++|+.|.++++. +.
T Consensus 182 l~~l~----l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~------ 246 (457)
T 3bz5_A 182 ITELD----VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LT------ 246 (457)
T ss_dssp CCCCC----CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CS------
T ss_pred cceec----cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc-CC------
Confidence 87754 223456777666544332221 2266788888888888766 33 6777888888888775 11
Q ss_pred cccCCcccccccc---------ccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhcc
Q 043332 757 PREQGLVNIGKFS---------HDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATN 827 (897)
Q Consensus 757 ~~~~~l~~~~~l~---------~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~ 827 (897)
.+| .+.++ .+|+.|++++|...+.+| ...+++|+.|++++|..+..++.
T Consensus 247 ----~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~------------- 304 (457)
T 3bz5_A 247 ----ELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC------------- 304 (457)
T ss_dssp ----CCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC-------------
T ss_pred ----CcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc-------------
Confidence 121 22333 134455555555444443 23567888888888876665542
Q ss_pred ccccccccCccceeecccCcccccccCCC------CcccCCCccEEEecCC
Q 043332 828 TIINTVTLPRLKRLGFYFLPEFKSFCSNN------GVLVCNSLQEIEVRGC 872 (897)
Q Consensus 828 ~~~~~~~fp~L~~L~L~~~~~L~~~~~~~------~~~~~p~L~~L~i~~C 872 (897)
.+++|+.|++++|++|+.+..+. ....+++|+.|+++++
T Consensus 305 ------~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 305 ------QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp ------TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred ------CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC
Confidence 13344444444444444332211 1234677777777765
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.2e-21 Score=230.33 Aligned_cols=304 Identities=13% Similarity=0.132 Sum_probs=232.8
Q ss_pred CCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceeeccccccccCCc--chhccccCC
Q 043332 519 HCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALH 595 (897)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~ 595 (897)
.+.+++.+++++| .+..+|..+|.++++|++|+|++|.++.+|. .++.+++|++|+|++|. ++.+| .++++++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 4678999999998 7889999999999999999999999997764 79999999999999985 55555 489999999
Q ss_pred EeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEe
Q 043332 596 YLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHF 674 (897)
Q Consensus 596 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 674 (897)
+|++++|.+..+|.. ++++++|++|++++|.+..+++..++++++|++|+++ ++..... .+..+++ |+.|+++.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~---~~~~l~~-L~~L~l~~ 201 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHV---DLSLIPS-LFHANVSY 201 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT-TSCCSBC---CGGGCTT-CSEEECCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc-CCCCCCc---Chhhhhh-hhhhhccc
Confidence 999999999999887 5999999999999999999988878999999999998 3433333 2566788 99999998
Q ss_pred ccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccccceeEEeccCCcccccc
Q 043332 675 STLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLND 754 (897)
Q Consensus 675 ~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 754 (897)
|.+..+. ....|+.+.+..+..... .....+.++.+++++|.+.+. +.+..+++|+.|+++++.- ..+
T Consensus 202 n~l~~l~------~~~~L~~L~ls~n~l~~~--~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~-- 269 (597)
T 3oja_B 202 NLLSTLA------IPIAVEELDASHNSINVV--RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNEL-EKI-- 269 (597)
T ss_dssp SCCSEEE------CCTTCSEEECCSSCCCEE--ECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CEE--
T ss_pred Ccccccc------CCchhheeeccCCccccc--ccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCcc-CCC--
Confidence 8776532 223566666554332211 111335788999999987653 5578889999999998751 111
Q ss_pred cCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccc
Q 043332 755 VLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVT 834 (897)
Q Consensus 755 ~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 834 (897)
....++.++ +|+.|+|++|. ++.++.. ...+++|+.|++++| .+..++. ....
T Consensus 270 ------~~~~~~~l~-~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~Ls~N-~l~~i~~----------------~~~~ 322 (597)
T 3oja_B 270 ------MYHPFVKMQ-RLERLYISNNR-LVALNLY--GQPIPTLKVLDLSHN-HLLHVER----------------NQPQ 322 (597)
T ss_dssp ------ESGGGTTCS-SCCEEECTTSC-CCEEECS--SSCCTTCCEEECCSS-CCCCCGG----------------GHHH
T ss_pred ------CHHHhcCcc-CCCEEECCCCC-CCCCCcc--cccCCCCcEEECCCC-CCCccCc----------------cccc
Confidence 012367788 99999999975 5555333 356889999999996 4544421 1225
Q ss_pred cCccceeecccCcccccccCCCCcccCCCccEEEecCCC
Q 043332 835 LPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 835 fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 873 (897)
+|+|+.|+|++++ +..+. ...+++|++|++++||
T Consensus 323 l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 323 FDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp HTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 8999999999986 55553 3447899999999986
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.4e-20 Score=214.34 Aligned_cols=350 Identities=17% Similarity=0.171 Sum_probs=241.0
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC-cC-CcccccCcccceeec
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE-VL-PSSVSDLTNLRSLLL 576 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~l~~L~~L~L 576 (897)
-+.++..++.+..+|. . .++|++|++++| .+..+++..|.++++|++|++++|.+. .+ |..+..+++|++|+|
T Consensus 12 ~~~~~c~~~~l~~lp~-l---~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L---PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCSSCCC-C---CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcccCCC-C---CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 3457777888888886 2 378999999999 677776666799999999999999986 55 566899999999999
Q ss_pred cccccccCCc-chhccccCCEeeccCCcCcc-cCcc--ccCCCCCCEEeCCCCCCCcCCCC-cccCCcccCeEecccCch
Q 043332 577 RYCLRLRRVP-SVAKLLALHYLDLEATRIEE-VPEG--MEMLENLSYLYLYSLPLKKFPTG-ILPRLRDLYKLKLSFGRE 651 (897)
Q Consensus 577 ~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 651 (897)
++|......| .++++++|++|++++|.+.. +|.. ++.+++|++|++++|.+..+++. .++++++|++|+++ .+.
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~-~n~ 165 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT-FNK 165 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT-TCC
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC-CCc
Confidence 9986555556 69999999999999999985 4444 89999999999999999888554 47899999999998 344
Q ss_pred hhhhcHHHHHhh--hcccceeEEEeccchhhhhhhhc-------cCCCCceeeEEEecccc--ccccccc--ccccccce
Q 043332 652 ALRETVEEAARL--SNRLDTFEGHFSTLKDFNIYVKS-------TDGRGSKNYCLLLSASD--MRGILIT--DLEVDKSV 718 (897)
Q Consensus 652 ~~~~~~~~l~~l--~~~L~~L~l~~~~l~~~~~~~~~-------~~~~~L~~l~~~~~~~~--~~~~~~~--~~~~l~~l 718 (897)
........+..+ .+ |+.|+++.+.+..+...... ....+|+.+.+..+... .+..+.. ..+.++.+
T Consensus 166 l~~~~~~~l~~l~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 166 VKSICEEDLLNFQGKH-FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp BSCCCTTTSGGGTTCE-EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred ccccChhhhhcccccc-ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 444444445555 45 88888888876654332110 11234555544433211 1111110 12556677
Q ss_pred eeecccccCCCCc-----------c--cCccccceeEEeccCCcccccccCcccCCcc-ccccccccccEEEEecCCCCC
Q 043332 719 SLMNCKICEREEP-----------I--VLPEDVQFLQMFEVSDVASLNDVLPREQGLV-NIGKFSHDLKVLSFVRCPNLK 784 (897)
Q Consensus 719 ~l~~~~~~~~~~~-----------l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~~L~~L~l~~c~~l~ 784 (897)
.++++...+.... + ...++|+.|+++++.-... .| .++.++ +|+.|++++|. ++
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------~~~~~~~l~-~L~~L~Ls~n~-l~ 312 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----------LKSVFSHFT-DLEQLTLAQNE-IN 312 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----------CTTTTTTCT-TCCEEECTTSC-CC
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCcccccc----------chhhcccCC-CCCEEECCCCc-cc
Confidence 7776644321110 1 1235788888888752111 12 256778 99999999986 44
Q ss_pred CCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCc
Q 043332 785 NLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSL 864 (897)
Q Consensus 785 ~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L 864 (897)
.+++. .+.++++|+.|++++| .+..+... ....+++|++|+|+++. ++.+.. .....+++|
T Consensus 313 ~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~---------------~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L 373 (455)
T 3v47_A 313 KIDDN-AFWGLTHLLKLNLSQN-FLGSIDSR---------------MFENLDKLEVLDLSYNH-IRALGD-QSFLGLPNL 373 (455)
T ss_dssp EECTT-TTTTCTTCCEEECCSS-CCCEECGG---------------GGTTCTTCCEEECCSSC-CCEECT-TTTTTCTTC
T ss_pred ccChh-HhcCcccCCEEECCCC-ccCCcChh---------------HhcCcccCCEEECCCCc-ccccCh-hhccccccc
Confidence 44332 3667899999999996 45444211 12258999999999984 555533 234457899
Q ss_pred cEEEecCCCCCccccCCc-ccccC
Q 043332 865 QEIEVRGCPKLKRLSLSL-PLLDN 887 (897)
Q Consensus 865 ~~L~i~~C~~L~~lp~~~-~~l~~ 887 (897)
++|++++| +++.+|... ..+.+
T Consensus 374 ~~L~L~~N-~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 374 KELALDTN-QLKSVPDGIFDRLTS 396 (455)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTT
T ss_pred cEEECCCC-ccccCCHhHhccCCc
Confidence 99999998 677777643 44444
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.4e-20 Score=204.45 Aligned_cols=290 Identities=17% Similarity=0.166 Sum_probs=154.6
Q ss_pred CccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceeeccccccccCCc-chhccccCCEeec
Q 043332 522 ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDL 599 (897)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l 599 (897)
+++.++++++ .+..+|..+ .++|++|++++|.++.++ ..+..+++|++|++++|......| .++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555555554 344444433 234555555555555442 345555555555555543222223 3555555555555
Q ss_pred cCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhh--hhcHHHHHhhhcccceeEEEeccc
Q 043332 600 EATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREAL--RETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 600 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
++|.+..+|..+. ++|++|++++|.+..++...++++++|++|+++ ++... ......+..+ + |+.|+++.|.+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l-~-L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG-GNPLENSGFEPGAFDGL-K-LNYLRISEAKL 184 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC-SCCCBGGGSCTTSSCSC-C-CSCCBCCSSBC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC-CCccccCCCCcccccCC-c-cCEEECcCCCC
Confidence 5555555555443 455555555555555555445555555555555 12111 1111222233 3 55555555444
Q ss_pred hhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCC-CcccCccccceeEEeccCCcccccccC
Q 043332 678 KDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICERE-EPIVLPEDVQFLQMFEVSDVASLNDVL 756 (897)
Q Consensus 678 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~ 756 (897)
..++.. ..+.++.++++++.+.... ..+..+++|+.|.++++.
T Consensus 185 ~~l~~~---------------------------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~--------- 228 (332)
T 2ft3_A 185 TGIPKD---------------------------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ--------- 228 (332)
T ss_dssp SSCCSS---------------------------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC---------
T ss_pred CccCcc---------------------------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc---------
Confidence 332111 1134666677777665544 236677888999888875
Q ss_pred cccCCcc--ccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccc
Q 043332 757 PREQGLV--NIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVT 834 (897)
Q Consensus 757 ~~~~~l~--~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 834 (897)
...++ .++.++ +|+.|++++|. ++.+|.. +..+++|+.|+++++ .++.+.... +.. ......
T Consensus 229 --l~~~~~~~~~~l~-~L~~L~L~~N~-l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~-------~~~--~~~~~~ 292 (332)
T 2ft3_A 229 --IRMIENGSLSFLP-TLRELHLDNNK-LSRVPAG--LPDLKLLQVVYLHTN-NITKVGVND-------FCP--VGFGVK 292 (332)
T ss_dssp --CCCCCTTGGGGCT-TCCEEECCSSC-CCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTS-------SSC--SSCCSS
T ss_pred --CCcCChhHhhCCC-CCCEEECCCCc-CeecChh--hhcCccCCEEECCCC-CCCccChhH-------ccc--cccccc
Confidence 22222 256777 99999999975 5566543 667889999999985 566553211 000 000113
Q ss_pred cCccceeecccCcccccccCC-CCcccCCCccEEEecCCC
Q 043332 835 LPRLKRLGFYFLPEFKSFCSN-NGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 835 fp~L~~L~L~~~~~L~~~~~~-~~~~~~p~L~~L~i~~C~ 873 (897)
+++|+.|++.++|. ..+... .....+++|+.|++++|.
T Consensus 293 ~~~l~~L~l~~N~~-~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPV-PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSS-CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcc-cccccCcccccccchhhhhhccccc
Confidence 67899999999874 322221 123346788888888875
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=3.1e-20 Score=217.14 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=121.7
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeecc
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLR 577 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 577 (897)
.+++++++|.++.+|.... ++|++|++++| .+..++...|.++++|++|++++|.++.+ |..+..+++|++|+|+
T Consensus 33 ~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP---PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC---TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC---CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4889999999999997653 79999999999 78888877789999999999999999977 6779999999999999
Q ss_pred ccccccCCcchhccccCCEeeccCCcCcccC--ccccCCCCCCEEeCCCCCCCcCCCCcccCCccc--CeEecc
Q 043332 578 YCLRLRRVPSVAKLLALHYLDLEATRIEEVP--EGMEMLENLSYLYLYSLPLKKFPTGILPRLRDL--YKLKLS 647 (897)
Q Consensus 578 ~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~ 647 (897)
+| .++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+.... +..+++| ++|+++
T Consensus 109 ~N-~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 109 HN-RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLD 177 (562)
T ss_dssp TS-CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEE
T ss_pred CC-cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEee
Confidence 98 56788844 8999999999999998765 78999999999999999987643 4555666 999887
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.5e-19 Score=215.08 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=135.3
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
.+..+..+|.. .+.++++|++++|.++.+++..|.++++|++|++++| .+..+++..|.++++|++|+|++|.++.+
T Consensus 39 ~~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 34567788865 4678999999999999999988999999999999999 78899998899999999999999999998
Q ss_pred Cc-ccccCcccceeeccccccccCCc--chhccccCCEeeccCCcCcc--cCccccCCCCCCEEeCCCCCCCcCCCCccc
Q 043332 562 PS-SVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEE--VPEGMEMLENLSYLYLYSLPLKKFPTGILP 636 (897)
Q Consensus 562 p~-~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (897)
|. .+.++.+|++|+|++| .++.+| .++++++|++|++++|.+.. +|..++.+++|++|++++|.+..+++..+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 86 4799999999999998 566666 49999999999999998875 578899999999999999998887665554
Q ss_pred CCccc
Q 043332 637 RLRDL 641 (897)
Q Consensus 637 ~l~~L 641 (897)
.++++
T Consensus 195 ~L~~l 199 (635)
T 4g8a_A 195 VLHQM 199 (635)
T ss_dssp HHHTC
T ss_pred chhhh
Confidence 44433
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1e-19 Score=197.51 Aligned_cols=182 Identities=21% Similarity=0.306 Sum_probs=113.2
Q ss_pred cCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCccc
Q 043332 486 LQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSV 565 (897)
Q Consensus 486 ~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i 565 (897)
+..+|.. ...+++.|++++|.+..++...+..+++|++|++++| .+..+++..|.++++|++|++++|.++.+|..+
T Consensus 43 l~~lp~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 119 (330)
T 1xku_A 43 LEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119 (330)
T ss_dssp CCSCCCS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred ccccCcc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhh
Confidence 3444433 2346677777777777776666667777777777776 555554444567777777777777777776655
Q ss_pred ccCcccceeeccccccccCCc--chhccccCCEeeccCCcCc---ccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcc
Q 043332 566 SDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIE---EVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRD 640 (897)
Q Consensus 566 ~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 640 (897)
. ++|++|++++|. ++.++ .+.++++|++|++++|.+. ..|..+.++++|++|++++|.+..+|.... ++
T Consensus 120 ~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~ 193 (330)
T 1xku_A 120 P--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PS 193 (330)
T ss_dssp C--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TT
T ss_pred c--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---cc
Confidence 4 577777777763 34444 3677777777777777664 234556677777777777777776665532 56
Q ss_pred cCeEecccCchhhhhcHHHHHhhhcccceeEEEeccch
Q 043332 641 LYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
|++|+++ .+.........+..+++ |+.|+++.|.+.
T Consensus 194 L~~L~l~-~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~ 229 (330)
T 1xku_A 194 LTELHLD-GNKITKVDAASLKGLNN-LAKLGLSFNSIS 229 (330)
T ss_dssp CSEEECT-TSCCCEECTGGGTTCTT-CCEEECCSSCCC
T ss_pred CCEEECC-CCcCCccCHHHhcCCCC-CCEEECCCCcCc
Confidence 6777766 23333333344555566 666666655443
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=222.14 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=118.4
Q ss_pred hhccccccEEEcccc-ccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc-CCcc--cccC
Q 043332 493 QEWKENLERVSLMKN-NIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV-LPSS--VSDL 568 (897)
Q Consensus 493 ~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~--i~~l 568 (897)
.....+++.|++++| .+..+++..+.++++|++|++++| .+..+++..|.++++|++|+|++|.++. +|.. ++++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 344568899999988 455676677789999999999998 6677766667899999999999999874 5554 8899
Q ss_pred cccceeeccccccccCCc--chhccccCCEeeccCCcCcc-cCccccCC--CCCCEEeCCCCCCCcCCCCcccCCcc---
Q 043332 569 TNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEE-VPEGMEML--ENLSYLYLYSLPLKKFPTGILPRLRD--- 640 (897)
Q Consensus 569 ~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~-lp~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~--- 640 (897)
++|++|+|++|......+ .++++++|++|++++|.+.. .|..+..+ ++|+.|++++|.+....+..++.+.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 999999999985544333 48999999999999998875 45667766 78889999888866543332344444
Q ss_pred ---cCeEecc
Q 043332 641 ---LYKLKLS 647 (897)
Q Consensus 641 ---L~~L~l~ 647 (897)
|++|+++
T Consensus 203 ~~~L~~L~Ls 212 (844)
T 3j0a_A 203 NMVLEILDVS 212 (844)
T ss_dssp TCCBSEEBCS
T ss_pred cCceeEEecC
Confidence 8888887
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.2e-19 Score=204.99 Aligned_cols=318 Identities=19% Similarity=0.194 Sum_probs=182.9
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 575 (897)
+++++.|++++|.+..+|.. +++|++|++++| .+..++.. .++|++|++++|.++.+| .++.+++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCccccc----cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence 45788888888888887642 368888888887 55555531 267888888888888887 588888888888
Q ss_pred ccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 576 LRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 576 L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
+++| .++.+|.. ..+|++|++++|.++.+| .++++++|++|++++|.+..+|.. .++|++|+++. +...
T Consensus 160 l~~N-~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~-n~l~-- 228 (454)
T 1jl5_A 160 VDNN-SLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGN-NILE-- 228 (454)
T ss_dssp CCSS-CCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCS-SCCS--
T ss_pred CCCC-cCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcC-CcCC--
Confidence 8887 45566632 247888888888888877 688888888888888887776643 24788888873 3322
Q ss_pred cHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCc
Q 043332 656 TVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLP 735 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~ 735 (897)
.+..+..+++ |+.|+++.|.+..++.. ..+|+.+.+..+.... ++...+.++.+++++|.+.+.. ..+
T Consensus 229 ~lp~~~~l~~-L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l~~---l~~~~~~L~~L~ls~N~l~~l~---~~~ 296 (454)
T 1jl5_A 229 ELPELQNLPF-LTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTD---LPELPQSLTFLDVSENIFSGLS---ELP 296 (454)
T ss_dssp SCCCCTTCTT-CCEEECCSSCCSSCCSC-----CTTCCEEECCSSCCSC---CCCCCTTCCEEECCSSCCSEES---CCC
T ss_pred cccccCCCCC-CCEEECCCCcCCccccc-----ccccCEEECCCCcccc---cCcccCcCCEEECcCCccCccc---CcC
Confidence 1223667777 88888887776654321 2355665554332211 1113356777777777664421 123
Q ss_pred cccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhccc
Q 043332 736 EDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVV 815 (897)
Q Consensus 736 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~ 815 (897)
++|+.|.++++. ... +..+|.+|+.|++++|. ++.++. .+++|+.|++++| .++.+..
T Consensus 297 ~~L~~L~l~~N~-----------l~~---i~~~~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L~~N-~l~~lp~- 354 (454)
T 1jl5_A 297 PNLYYLNASSNE-----------IRS---LCDLPPSLEELNVSNNK-LIELPA-----LPPRLERLIASFN-HLAEVPE- 354 (454)
T ss_dssp TTCCEEECCSSC-----------CSE---ECCCCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSCCCC-
T ss_pred CcCCEEECcCCc-----------CCc---ccCCcCcCCEEECCCCc-cccccc-----cCCcCCEEECCCC-ccccccc-
Confidence 677777777664 111 12232377888887764 444433 2467788888775 4444321
Q ss_pred ccchhhhhhhccccccccccCccceeecccCcccc--cccCCCCcc-----------cCCCccEEEecCCCCCc--cccC
Q 043332 816 EDEETEKELATNTIINTVTLPRLKRLGFYFLPEFK--SFCSNNGVL-----------VCNSLQEIEVRGCPKLK--RLSL 880 (897)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~--~~~~~~~~~-----------~~p~L~~L~i~~C~~L~--~lp~ 880 (897)
.+++|++|++++++--. .++.+-... .+++|++|++++++-.. .+|.
T Consensus 355 ------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 355 ------------------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ------------------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred ------------------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 36778888877764222 222211111 01678888888875443 5666
Q ss_pred Cccccc
Q 043332 881 SLPLLD 886 (897)
Q Consensus 881 ~~~~l~ 886 (897)
++..+.
T Consensus 417 sl~~L~ 422 (454)
T 1jl5_A 417 SVEDLR 422 (454)
T ss_dssp ------
T ss_pred hHhhee
Confidence 665553
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=8.8e-20 Score=198.13 Aligned_cols=286 Identities=16% Similarity=0.165 Sum_probs=159.3
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L 576 (897)
.++.++++++.+..+|... .++|++|++++| .+..++...|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666666666543 246666777666 45555555556666777777776666654 455666677777777
Q ss_pred cccccccCCc-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCc--CCCCcccCCcccCeEecccCchh
Q 043332 577 RYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKK--FPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 577 ~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
++| .++.+| .+. ++|++|++++|.+..+|.. +.++++|++|++++|.+.. .++..++.+ +|++|+++. +..
T Consensus 110 ~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l 184 (332)
T 2ft3_A 110 SKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKL 184 (332)
T ss_dssp CSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBC
T ss_pred CCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCC
Confidence 665 344555 333 5667777776666666543 6666677777776666543 333444555 666666652 221
Q ss_pred hhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCC-c
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREE-P 731 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~ 731 (897)
... +..+ .++ |+.|+++.|.+...... .+ ..++.++.+++++|.+....+ .
T Consensus 185 ~~l-~~~~--~~~-L~~L~l~~n~i~~~~~~-----------------------~l-~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 185 TGI-PKDL--PET-LNELHLDHNKIQAIELE-----------------------DL-LRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp SSC-CSSS--CSS-CSCCBCCSSCCCCCCTT-----------------------SS-TTCTTCSCCBCCSSCCCCCCTTG
T ss_pred Ccc-Cccc--cCC-CCEEECCCCcCCccCHH-----------------------Hh-cCCCCCCEEECCCCcCCcCChhH
Confidence 111 0001 134 66666666554432110 01 144556666777766655443 3
Q ss_pred ccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCCCCCChhhhhh-----ccCCccEEEEec
Q 043332 732 IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFSLQLLP-----ALQNLEVLEVKV 805 (897)
Q Consensus 732 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~~~~l~-----~L~~L~~L~l~~ 805 (897)
+..+++|+.|.++++. ...+|. +..++ +|+.|++++|. ++.+++..+.+ ..++|+.|++.+
T Consensus 237 ~~~l~~L~~L~L~~N~-----------l~~lp~~l~~l~-~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNK-----------LSRVPAGLPDLK-LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp GGGCTTCCEEECCSSC-----------CCBCCTTGGGCT-TCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred hhCCCCCCEEECCCCc-----------CeecChhhhcCc-cCCEEECCCCC-CCccChhHccccccccccccccceEeec
Confidence 5667778888887764 222333 56666 88888888764 55554332221 145678888887
Q ss_pred cccchhhcccccchhhhhhhccccccccccCccceeecccCc
Q 043332 806 CFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLP 847 (897)
Q Consensus 806 c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~ 847 (897)
++ +...... +.....+++|+.|+++++.
T Consensus 304 N~-~~~~~~~-------------~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NP-VPYWEVQ-------------PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SS-SCGGGSC-------------GGGGTTBCCSTTEEC----
T ss_pred Cc-ccccccC-------------cccccccchhhhhhccccc
Confidence 64 2211100 0123357888888887764
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.5e-19 Score=195.38 Aligned_cols=147 Identities=27% Similarity=0.453 Sum_probs=127.6
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
..++.|++++|.+..+|..++ .+++|++|++++| .+..+|..+ .++++|++|+|++|.++.+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n-~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAA-GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESS-CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhh-hCCCCCEEECCCC-CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 468899999999999987654 5899999999998 566888654 8899999999999999999999999999999999
Q ss_pred cccccccCCc-chhc---------cccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEec
Q 043332 577 RYCLRLRRVP-SVAK---------LLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKL 646 (897)
Q Consensus 577 ~~~~~~~~lp-~~~~---------l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 646 (897)
++|..++.+| .++. +++|++|++++|.++.+|..++++++|++|++++|.+..+|.. ++++++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEEC
Confidence 9998888888 5654 8999999999999999999999999999999999998888775 577888888877
Q ss_pred c
Q 043332 647 S 647 (897)
Q Consensus 647 ~ 647 (897)
+
T Consensus 237 s 237 (328)
T 4fcg_A 237 R 237 (328)
T ss_dssp T
T ss_pred c
Confidence 6
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=2e-19 Score=195.09 Aligned_cols=291 Identities=15% Similarity=0.182 Sum_probs=161.0
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L 576 (897)
+++.++++++.+..+|.... +.+++|++++| .+..++...|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCC---CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45666666666666665332 46666666666 55566655556666677777766666654 556666666666666
Q ss_pred cccccccCCc-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCc--CCCCcccCCcccCeEecccCchh
Q 043332 577 RYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKK--FPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 577 ~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
++| .++.+| .+. ++|++|++++|.+..++.. +.++++|++|++++|.+.. ..+..++++++|++|+++
T Consensus 108 s~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~----- 179 (330)
T 1xku_A 108 SKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA----- 179 (330)
T ss_dssp CSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-----
T ss_pred CCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC-----
Confidence 665 344555 332 5666666666666655443 5666666666666666543 333334555555555554
Q ss_pred hhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCC-Cc
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICERE-EP 731 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~ 731 (897)
.|.+..++.. ..+.++.+++++|.+.... ..
T Consensus 180 ---------------------~n~l~~l~~~---------------------------~~~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 180 ---------------------DTNITTIPQG---------------------------LPPSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp ---------------------SSCCCSCCSS---------------------------CCTTCSEEECTTSCCCEECTGG
T ss_pred ---------------------CCccccCCcc---------------------------ccccCCEEECCCCcCCccCHHH
Confidence 3332211100 0123444555555443322 22
Q ss_pred ccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchh
Q 043332 732 IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEE 811 (897)
Q Consensus 732 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~ 811 (897)
+..+++|+.|.++++. +..+. ...+..++ +|++|++++|. ++.+|.. +..+++|+.|++++| .++.
T Consensus 212 ~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~l~-~L~~L~L~~N~-l~~lp~~--l~~l~~L~~L~l~~N-~i~~ 277 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNS-ISAVD--------NGSLANTP-HLRELHLNNNK-LVKVPGG--LADHKYIQVVYLHNN-NISA 277 (330)
T ss_dssp GTTCTTCCEEECCSSC-CCEEC--------TTTGGGST-TCCEEECCSSC-CSSCCTT--TTTCSSCCEEECCSS-CCCC
T ss_pred hcCCCCCCEEECCCCc-CceeC--------hhhccCCC-CCCEEECCCCc-CccCChh--hccCCCcCEEECCCC-cCCc
Confidence 5566778888887764 11110 11255667 88888888874 5555432 567788888888885 5555
Q ss_pred hcccccchhhhhhhccccccccccCccceeecccCcccccccCC-CCcccCCCccEEEecCC
Q 043332 812 IVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSN-NGVLVCNSLQEIEVRGC 872 (897)
Q Consensus 812 i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~-~~~~~~p~L~~L~i~~C 872 (897)
+.... +.. ......++.|+.|++.++|- ..+... .....+++|+.++++++
T Consensus 278 ~~~~~-------f~~--~~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 278 IGSND-------FCP--PGYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTS-------SSC--SSCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGEEC---
T ss_pred cChhh-------cCC--cccccccccccceEeecCcc-cccccCccccccccceeEEEeccc
Confidence 43211 000 00011357888888888873 333221 12223567777777765
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3.7e-19 Score=200.94 Aligned_cols=308 Identities=18% Similarity=0.209 Sum_probs=211.2
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeecc
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLR 577 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 577 (897)
++++|++++|.+..+|.. .++|++|++++| .+..+|. .+++|++|++++|.++.+|.. .++|++|+++
T Consensus 72 ~l~~L~l~~~~l~~lp~~----~~~L~~L~l~~n-~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~ 139 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPEL----PPHLESLVASCN-SLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS 139 (454)
T ss_dssp TCSEEECTTSCCSCCCSC----CTTCSEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred CCCEEEecCCccccCCCC----cCCCCEEEccCC-cCCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECc
Confidence 458888888888887652 368889999888 5666764 247889999999888877643 2688999999
Q ss_pred ccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcH
Q 043332 578 YCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETV 657 (897)
Q Consensus 578 ~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 657 (897)
+| .++.+|+++++++|++|++++|.++.+|..+ .+|++|++++|.+..+| . ++++++|++|+++. +......
T Consensus 140 ~n-~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~-N~l~~l~- 211 (454)
T 1jl5_A 140 NN-QLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADN-NSLKKLP- 211 (454)
T ss_dssp SS-CCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCS-SCCSSCC-
T ss_pred CC-CCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-c-ccCCCCCCEEECCC-CcCCcCC-
Confidence 87 4566888888999999999999888887654 47889999999888877 3 68899999998883 3222110
Q ss_pred HHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccc
Q 043332 658 EEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPED 737 (897)
Q Consensus 658 ~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~ 737 (897)
. ...+ |+.|+++.|.+..++. .....+|+.+.+..+.... ++...+.++.+++++|.+.+... .+++
T Consensus 212 -~--~~~~-L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~N~l~~l~~---~~~~ 278 (454)
T 1jl5_A 212 -D--LPLS-LESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNYLTDLPE---LPQS 278 (454)
T ss_dssp -C--CCTT-CCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSS---CCSCCTTCCEEECCSSCCSCCCC---CCTT
T ss_pred -C--CcCc-ccEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCc---ccccccccCEEECCCCcccccCc---ccCc
Confidence 0 1135 8888888887765543 2234456666655433221 11133567778888777654222 2467
Q ss_pred cceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhcc-CCccEEEEeccccchhhcccc
Q 043332 738 VQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPAL-QNLEVLEVKVCFSIEEIVVVE 816 (897)
Q Consensus 738 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L-~~L~~L~l~~c~~l~~i~~~~ 816 (897)
|+.|+++++. ..+++ .+|++|+.|++++|. ++.++ .+ ++|+.|++++| .++.+..
T Consensus 279 L~~L~ls~N~-----------l~~l~---~~~~~L~~L~l~~N~-l~~i~------~~~~~L~~L~Ls~N-~l~~lp~-- 334 (454)
T 1jl5_A 279 LTFLDVSENI-----------FSGLS---ELPPNLYYLNASSNE-IRSLC------DLPPSLEELNVSNN-KLIELPA-- 334 (454)
T ss_dssp CCEEECCSSC-----------CSEES---CCCTTCCEEECCSSC-CSEEC------CCCTTCCEEECCSS-CCSCCCC--
T ss_pred CCEEECcCCc-----------cCccc---CcCCcCCEEECcCCc-CCccc------CCcCcCCEEECCCC-ccccccc--
Confidence 8888887764 11222 222388899988875 33332 23 48899999885 4554321
Q ss_pred cchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCCc--cccCCcccc
Q 043332 817 DEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLK--RLSLSLPLL 885 (897)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~--~lp~~~~~l 885 (897)
.+++|+.|+++++ +++.++. .+++|++|++++|+-.. .+|.++..+
T Consensus 335 -----------------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 335 -----------------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp -----------------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -----------------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 3689999999988 5666643 36899999999996544 577777665
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=5.1e-20 Score=197.77 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=168.2
Q ss_pred ccccEEEcccccccc---CCCCCCCCCCCccEEEccC-CCCcccCChhHhhCCCCccEEEecCCCCC-cCCcccccCccc
Q 043332 497 ENLERVSLMKNNIKE---IPSYMSPHCDILSTLLLQA-NGNLWTIPECFFVHMHGLKVLNLSHTDIE-VLPSSVSDLTNL 571 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L 571 (897)
.+++.|++++|.+.. +|. .+..+++|++|++++ |.....+|.. |.++++|++|++++|.++ .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 468889999988875 444 456888999999985 6333355655 588899999999999887 788888889999
Q ss_pred ceeeccccccccCCc-chhccccCCEeeccCCcCc-ccCccccCCC-CCCEEeCCCCCCCcCCCCcccCCcccCeEeccc
Q 043332 572 RSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIE-EVPEGMEMLE-NLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSF 648 (897)
Q Consensus 572 ~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 648 (897)
++|++++|.....+| .+..+++|++|++++|.+. .+|..++.+. +|++|++++|.+....+..++.++ |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls- 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS- 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC-
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc-
Confidence 999999886555777 6888999999999999887 7888888887 899999998887744444467776 8888887
Q ss_pred CchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCC
Q 043332 649 GREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICER 728 (897)
Q Consensus 649 ~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 728 (897)
.+.........+..+++ |+.|+++.|.+. +.
T Consensus 206 ~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~------------------------------------------------~~ 236 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKN-TQKIHLAKNSLA------------------------------------------------FD 236 (313)
T ss_dssp SSEEEECCGGGCCTTSC-CSEEECCSSEEC------------------------------------------------CB
T ss_pred CCcccCcCCHHHhcCCC-CCEEECCCCcee------------------------------------------------ee
Confidence 33333333344555555 666666555432 22
Q ss_pred CCcccCccccceeEEeccCCcccccccCcccCCcc-ccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccc
Q 043332 729 EEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLV-NIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCF 807 (897)
Q Consensus 729 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~ 807 (897)
.+.+..+++|+.|+++++.-.. .+| .++.++ +|+.|++++|...+.+|.. ..+++|+.|++.+++
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~----------~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYG----------TLPQGLTQLK-FLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEE----------CCCGGGGGCT-TCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSS
T ss_pred cCcccccCCCCEEECcCCcccC----------cCChHHhcCc-CCCEEECcCCcccccCCCC---ccccccChHHhcCCC
Confidence 2223445566666666654110 122 245566 7777777776544344433 345567777777765
Q ss_pred cchh
Q 043332 808 SIEE 811 (897)
Q Consensus 808 ~l~~ 811 (897)
.+..
T Consensus 303 ~lc~ 306 (313)
T 1ogq_A 303 CLCG 306 (313)
T ss_dssp EEES
T ss_pred CccC
Confidence 5543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=194.43 Aligned_cols=188 Identities=21% Similarity=0.226 Sum_probs=112.3
Q ss_pred CcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc
Q 043332 485 RLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS 564 (897)
Q Consensus 485 ~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~ 564 (897)
.+..+|.. ...++++|++++|.+..++...+..+++|++|++++| .+..++...|.++++|++|++++|.++.+|..
T Consensus 42 ~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred Cccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 44455543 2346667777777666666655666667777777666 55555555556666777777777766666654
Q ss_pred -cccCcccceeeccccccccCCcc---hhccccCCEeeccCC-cCcccC-ccccCCCCCCEEeCCCCCCCcCCCCcccCC
Q 043332 565 -VSDLTNLRSLLLRYCLRLRRVPS---VAKLLALHYLDLEAT-RIEEVP-EGMEMLENLSYLYLYSLPLKKFPTGILPRL 638 (897)
Q Consensus 565 -i~~l~~L~~L~L~~~~~~~~lp~---~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (897)
++.+++|++|++++| .++.+|. +.++++|++|++++| .+..++ ..++.+++|++|++++|.+..+++..++++
T Consensus 119 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 566667777777665 3444442 566667777777666 355543 446666667777776666666544445666
Q ss_pred cccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccch
Q 043332 639 RDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
++|++|+++ .+.........+..+++ |+.|+++.|.+.
T Consensus 198 ~~L~~L~l~-~n~l~~~~~~~~~~~~~-L~~L~L~~n~l~ 235 (353)
T 2z80_A 198 QNVSHLILH-MKQHILLLEIFVDVTSS-VECLELRDTDLD 235 (353)
T ss_dssp SEEEEEEEE-CSCSTTHHHHHHHHTTT-EEEEEEESCBCT
T ss_pred ccCCeecCC-CCccccchhhhhhhccc-ccEEECCCCccc
Confidence 666666666 22222222223344555 666666665543
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=3.9e-19 Score=188.53 Aligned_cols=160 Identities=28% Similarity=0.395 Sum_probs=89.0
Q ss_pred CcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCC-CCcC-C
Q 043332 485 RLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTD-IEVL-P 562 (897)
Q Consensus 485 ~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p 562 (897)
.+..+|.. .+.++++|++++|.+..++...+..+++|++|++++| .+..++...|.++++|++|++++|. +..+ |
T Consensus 22 ~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 22 GLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 34444432 2345666666666666655555555666666666655 4444444445556666666666664 5544 4
Q ss_pred cccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcc
Q 043332 563 SSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRD 640 (897)
Q Consensus 563 ~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 640 (897)
..+..+++|++|++++|......| .+.++++|++|++++|.+..+|.. ++.+++|++|++++|.+..++...+..+++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 445566666666666653322223 355566666666666665555443 555666666666666665555554555555
Q ss_pred cCeEecc
Q 043332 641 LYKLKLS 647 (897)
Q Consensus 641 L~~L~l~ 647 (897)
|++|+++
T Consensus 179 L~~L~l~ 185 (285)
T 1ozn_A 179 LDRLLLH 185 (285)
T ss_dssp CCEEECC
T ss_pred cCEEECC
Confidence 5555555
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=191.27 Aligned_cols=266 Identities=17% Similarity=0.168 Sum_probs=192.5
Q ss_pred EEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeecccc
Q 043332 501 RVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRYC 579 (897)
Q Consensus 501 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~ 579 (897)
..+.+++.++.+|.... ++|++|++++| .+..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 35 ~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 36778889999987654 58999999999 68888887789999999999999999976 456999999999999998
Q ss_pred ccccCCc-c-hhccccCCEeeccCCcCcccCc--cccCCCCCCEEeCCCC-CCCcCCCCcccCCcccCeEecccCchhhh
Q 043332 580 LRLRRVP-S-VAKLLALHYLDLEATRIEEVPE--GMEMLENLSYLYLYSL-PLKKFPTGILPRLRDLYKLKLSFGREALR 654 (897)
Q Consensus 580 ~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (897)
.++.+| . ++++++|++|++++|.+..+|. .+.++++|++|++++| .+..+++..++++++|++|+++ .+....
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~ 188 (353)
T 2z80_A 111 -YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID-ASDLQS 188 (353)
T ss_dssp -CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCE
T ss_pred -cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC-CCCcCc
Confidence 566777 4 8999999999999999999987 6899999999999998 4888877778999999999998 344444
Q ss_pred hcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCC----
Q 043332 655 ETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREE---- 730 (897)
Q Consensus 655 ~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---- 730 (897)
.....+..+++ |+.|+++.|.+..++..... .++.++.+++++|.+.+...
T Consensus 189 ~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~------------------------~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 189 YEPKSLKSIQN-VSHLILHMKQHILLLEIFVD------------------------VTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp ECTTTTTTCSE-EEEEEEECSCSTTHHHHHHH------------------------HTTTEEEEEEESCBCTTCCCC---
T ss_pred cCHHHHhcccc-CCeecCCCCccccchhhhhh------------------------hcccccEEECCCCccccccccccc
Confidence 44566788888 99999998887655443211 23345555565555433211
Q ss_pred cccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEecc
Q 043332 731 PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVC 806 (897)
Q Consensus 731 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 806 (897)
.......++.+.+.++. +..-. ...+|. ++.++ +|+.|++++|. ++.++. ..+.++++|+.|+++++
T Consensus 244 ~~~~~~~l~~l~L~~~~-l~~~~-----l~~l~~~l~~l~-~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 244 TGETNSLIKKFTFRNVK-ITDES-----LFQVMKLLNQIS-GLLELEFSRNQ-LKSVPD-GIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp ---CCCCCCEEEEESCB-CCHHH-----HHHHHHHHHTCT-TCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS
T ss_pred cccccchhhcccccccc-ccCcc-----hhhhHHHHhccc-CCCEEECCCCC-CCccCH-HHHhcCCCCCEEEeeCC
Confidence 12234456666665543 11000 011222 45666 88888888874 455543 33456778888888876
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=2.8e-18 Score=204.20 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=103.7
Q ss_pred CCCcc-chhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-c
Q 043332 487 QEFPV-EQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-S 564 (897)
Q Consensus 487 ~~~p~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~ 564 (897)
..+|. ......++++|++++|.++.+++..|.++++|++|++++| .+..+|...|.++++|++|+|++|.++.+|. .
T Consensus 65 ~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 65 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence 34443 2345578999999999999999988999999999999999 7889999889999999999999999998876 4
Q ss_pred cccCcccceeecccccccc-CCc-chhccccCCEeeccCCcCcccC
Q 043332 565 VSDLTNLRSLLLRYCLRLR-RVP-SVAKLLALHYLDLEATRIEEVP 608 (897)
Q Consensus 565 i~~l~~L~~L~L~~~~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp 608 (897)
++++++|++|+|++|.... .+| .++.+++|++|++++|.++.++
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 8999999999999985332 345 5899999999999999887664
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=6.8e-18 Score=196.31 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=88.7
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeecc
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLR 577 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 577 (897)
+++.|++++|.++.+|.... ++|++|++++| .+..+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 35666666666666665432 56666666666 4555554 35666666666666666665 55666666666
Q ss_pred ccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcH
Q 043332 578 YCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETV 657 (897)
Q Consensus 578 ~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 657 (897)
+| .++.+|. .+.+|++|++++|.++.+|..+ ++|++|++++|.+..+|.. +.+|+.|+++ ++......
T Consensus 110 ~N-~l~~l~~--~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~-~N~l~~l~- 177 (622)
T 3g06_A 110 SN-PLTHLPA--LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPAL----PSELCKLWAY-NNQLTSLP- 177 (622)
T ss_dssp SC-CCCCCCC--CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCCC----CTTCCEEECC-SSCCSCCC-
T ss_pred CC-cCCCCCC--CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCCc----cCCCCEEECC-CCCCCCCc-
Confidence 65 4455554 4566666666666666666542 5666666666666665532 3455566655 22221111
Q ss_pred HHHHhhhcccceeEEEeccchh
Q 043332 658 EEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 658 ~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
..+++ |+.|+++.|.+..
T Consensus 178 ---~~~~~-L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 178 ---MLPSG-LQELSVSDNQLAS 195 (622)
T ss_dssp ---CCCTT-CCEEECCSSCCSC
T ss_pred ---ccCCC-CcEEECCCCCCCC
Confidence 22344 6666665555443
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=193.08 Aligned_cols=234 Identities=23% Similarity=0.272 Sum_probs=183.5
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
.+..+..+|.. .+.+++.|++++|.+..++...+.++++|++|++++| .+..++...|.++++|++|+|++|.++.+
T Consensus 51 ~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 51 VRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CSCCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCee
Confidence 44566778765 4578999999999999998888899999999999999 78888888889999999999999999988
Q ss_pred Cc-ccccCcccceeeccccccccCCc--chhccccCCEeeccCC-cCcccCc-cccCCCCCCEEeCCCCCCCcCCCCccc
Q 043332 562 PS-SVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEAT-RIEEVPE-GMEMLENLSYLYLYSLPLKKFPTGILP 636 (897)
Q Consensus 562 p~-~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~-~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (897)
|. .+..+++|++|+|++|. ++.+| .+.++++|++|++++| .+..+|. .+.++++|++|++++|.++.+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cC
Confidence 76 58899999999999984 55665 5899999999999996 6777776 48899999999999999999875 68
Q ss_pred CCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEeccccccccccccccccc
Q 043332 637 RLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDK 716 (897)
Q Consensus 637 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~ 716 (897)
.+++|++|+++ ++.........+..+++ |+.|+++.|.+..+... . ...++.|+
T Consensus 205 ~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~-----------------------~-~~~l~~L~ 258 (440)
T 3zyj_A 205 PLIKLDELDLS-GNHLSAIRPGSFQGLMH-LQKLWMIQSQIQVIERN-----------------------A-FDNLQSLV 258 (440)
T ss_dssp TCSSCCEEECT-TSCCCEECTTTTTTCTT-CCEEECTTCCCCEECTT-----------------------S-STTCTTCC
T ss_pred CCcccCEEECC-CCccCccChhhhccCcc-CCEEECCCCceeEEChh-----------------------h-hcCCCCCC
Confidence 99999999998 44444444566778888 89888887765542211 0 11455667
Q ss_pred ceeeecccccCCCCc-ccCccccceeEEeccC
Q 043332 717 SVSLMNCKICEREEP-IVLPEDVQFLQMFEVS 747 (897)
Q Consensus 717 ~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~ 747 (897)
.++|++|.+....+. +..+++|+.|++++++
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 777777766543332 4566777777777665
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=3.9e-18 Score=193.43 Aligned_cols=234 Identities=25% Similarity=0.273 Sum_probs=177.7
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
.+..+..+|.. .+.+++.|++++|.+..++...+.++++|+.|++++| .+..++...|.++++|++|+|++|.++.+
T Consensus 62 ~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 62 TRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCcc
Confidence 34556677754 4578999999999999998888889999999999998 77778877789999999999999999988
Q ss_pred Ccc-cccCcccceeeccccccccCCc--chhccccCCEeeccCC-cCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCccc
Q 043332 562 PSS-VSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEAT-RIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILP 636 (897)
Q Consensus 562 p~~-i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~-~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (897)
|.. +..+++|++|+|++|. ++.+| .+.++++|++|++++| .+..+|.. +..+.+|++|++++|.+..+|. +.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~ 215 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT 215 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CT
T ss_pred ChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--cc
Confidence 765 7889999999999984 55666 5899999999999985 67777764 8899999999999999998864 68
Q ss_pred CCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEeccccccccccccccccc
Q 043332 637 RLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDK 716 (897)
Q Consensus 637 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~ 716 (897)
.+++|++|+++ ++.........+..+++ |+.|+++.|.+..+... .+ ..++.|+
T Consensus 216 ~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~-----------------------~~-~~l~~L~ 269 (452)
T 3zyi_A 216 PLVGLEELEMS-GNHFPEIRPGSFHGLSS-LKKLWVMNSQVSLIERN-----------------------AF-DGLASLV 269 (452)
T ss_dssp TCTTCCEEECT-TSCCSEECGGGGTTCTT-CCEEECTTSCCCEECTT-----------------------TT-TTCTTCC
T ss_pred ccccccEEECc-CCcCcccCcccccCccC-CCEEEeCCCcCceECHH-----------------------Hh-cCCCCCC
Confidence 89999999998 44444444566777888 88888877665432111 00 1445566
Q ss_pred ceeeecccccCCCCc-ccCccccceeEEeccC
Q 043332 717 SVSLMNCKICEREEP-IVLPEDVQFLQMFEVS 747 (897)
Q Consensus 717 ~l~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~ 747 (897)
.++|++|.+....+. +..+++|+.|++++++
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 666666665543322 4556666677666654
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=1.3e-18 Score=186.87 Aligned_cols=248 Identities=17% Similarity=0.145 Sum_probs=175.7
Q ss_pred CCccEEEccCCCCcc--cCChhHhhCCCCccEEEecC-CCCC-cCCcccccCcccceeeccccccccCCc-chhccccCC
Q 043332 521 DILSTLLLQANGNLW--TIPECFFVHMHGLKVLNLSH-TDIE-VLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALH 595 (897)
Q Consensus 521 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~ 595 (897)
.+++.|++++|.-.. .+|.. |.++++|++|++++ |.+. .+|..++.+++|++|++++|.....+| .+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999984333 46665 58899999999995 7766 788889999999999999986555777 699999999
Q ss_pred EeeccCCcCc-ccCccccCCCCCCEEeCCCCCCC-cCCCCcccCCc-ccCeEecccCchhhhhcHHHHHhhhcccceeEE
Q 043332 596 YLDLEATRIE-EVPEGMEMLENLSYLYLYSLPLK-KFPTGILPRLR-DLYKLKLSFGREALRETVEEAARLSNRLDTFEG 672 (897)
Q Consensus 596 ~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l 672 (897)
+|++++|.+. .+|..++.+++|++|++++|.+. .+|.. +++++ +|++|+++ .+......+..+..+ + |+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l-~-L~---- 200 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTIS-RNRLTGKIPPTFANL-N-LA---- 200 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECC-SSEEEEECCGGGGGC-C-CS----
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECc-CCeeeccCChHHhCC-c-cc----
Confidence 9999999888 68888999999999999999887 55544 57777 78888887 222222222222222 1 33
Q ss_pred EeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCC-cccCccccceeEEeccCCccc
Q 043332 673 HFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREE-PIVLPEDVQFLQMFEVSDVAS 751 (897)
Q Consensus 673 ~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~ 751 (897)
.+++++|.+.+..+ .+..+++|+.|.++++.-.
T Consensus 201 --------------------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 234 (313)
T 1ogq_A 201 --------------------------------------------FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-- 234 (313)
T ss_dssp --------------------------------------------EEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC--
T ss_pred --------------------------------------------EEECcCCcccCcCCHHHhcCCCCCEEECCCCcee--
Confidence 44444444433222 2566788999999887511
Q ss_pred ccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhcccccc
Q 043332 752 LNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIIN 831 (897)
Q Consensus 752 ~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 831 (897)
..++.+..++ +|++|++++|.....+|. .+..+++|+.|++++| .++..+..
T Consensus 235 --------~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N-~l~~~ip~---------------- 286 (313)
T 1ogq_A 235 --------FDLGKVGLSK-NLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFN-NLCGEIPQ---------------- 286 (313)
T ss_dssp --------CBGGGCCCCT-TCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSS-EEEEECCC----------------
T ss_pred --------eecCcccccC-CCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCC-cccccCCC----------------
Confidence 1133456677 999999999875434443 3678999999999996 44432211
Q ss_pred ccccCccceeecccCccccc
Q 043332 832 TVTLPRLKRLGFYFLPEFKS 851 (897)
Q Consensus 832 ~~~fp~L~~L~L~~~~~L~~ 851 (897)
...+++|+.|++.++|.+..
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp STTGGGSCGGGTCSSSEEES
T ss_pred CccccccChHHhcCCCCccC
Confidence 12588999999999886654
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=6.2e-20 Score=197.73 Aligned_cols=287 Identities=14% Similarity=0.065 Sum_probs=192.0
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccc
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 578 (897)
+...+++.+.+...+...+..+++|++|++++| .+..++...|.++++|++|++++|.++..+. +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 344455566666555555667789999999998 7777887778999999999999999886665 88999999999999
Q ss_pred cccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHH
Q 043332 579 CLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVE 658 (897)
Q Consensus 579 ~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
|. ++.+| ..++|++|++++|.+..++.. .+++|++|++++|.+..+++..++.+++|++|+++ .+......+.
T Consensus 90 n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~ 162 (317)
T 3o53_A 90 NY-VQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFA 162 (317)
T ss_dssp SE-EEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT-TSCCCEEEGG
T ss_pred Cc-ccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC-CCCCCcccHH
Confidence 73 44444 447899999999998877654 36789999999999888877667888889999888 3333333333
Q ss_pred HH-HhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccc
Q 043332 659 EA-ARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPED 737 (897)
Q Consensus 659 ~l-~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~ 737 (897)
.+ ..+++ |+.|+++.|.+..+ +....+++
T Consensus 163 ~~~~~l~~-L~~L~L~~N~l~~~-------------------------------------------------~~~~~l~~ 192 (317)
T 3o53_A 163 ELAASSDT-LEHLNLQYNFIYDV-------------------------------------------------KGQVVFAK 192 (317)
T ss_dssp GGGGGTTT-CCEEECTTSCCCEE-------------------------------------------------ECCCCCTT
T ss_pred HHhhccCc-CCEEECCCCcCccc-------------------------------------------------cccccccc
Confidence 33 24555 66666665544321 11223567
Q ss_pred cceeEEeccCCcccccccCcccCCc-cccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccc
Q 043332 738 VQFLQMFEVSDVASLNDVLPREQGL-VNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVE 816 (897)
Q Consensus 738 L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~ 816 (897)
|+.|+++++. ...+ +.+..++ +|+.|++++|. ++.++.. +..+++|+.|++++++-....+.
T Consensus 193 L~~L~Ls~N~-----------l~~l~~~~~~l~-~L~~L~L~~N~-l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~-- 255 (317)
T 3o53_A 193 LKTLDLSSNK-----------LAFMGPEFQSAA-GVTWISLRNNK-LVLIEKA--LRFSQNLEHFDLRGNGFHCGTLR-- 255 (317)
T ss_dssp CCEEECCSSC-----------CCEECGGGGGGT-TCSEEECTTSC-CCEECTT--CCCCTTCCEEECTTCCCBHHHHH--
T ss_pred CCEEECCCCc-----------CCcchhhhcccC-cccEEECcCCc-ccchhhH--hhcCCCCCEEEccCCCccCcCHH--
Confidence 7777777664 1122 2255666 88888888874 5555432 56778888888888633211110
Q ss_pred cchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCCCCc
Q 043332 817 DEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLK 876 (897)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~ 876 (897)
.....+|+|+.|++.+++.++..... ....+.+....-..|..+.
T Consensus 256 -------------~~~~~~~~L~~l~l~~~~~l~~~~~~--~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 256 -------------DFFSKNQRVQTVAKQTVKKLTGQNEE--ECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp -------------HHHHTCHHHHHHHHHHHHHHHSSSSC--CCSSTTCEEETTEEEBCCT
T ss_pred -------------HHHhccccceEEECCCchhccCCchh--ccCCCceecccceeeccCC
Confidence 01125788888888888777766652 2223344444445566554
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=7.3e-18 Score=196.09 Aligned_cols=265 Identities=18% Similarity=0.190 Sum_probs=191.8
Q ss_pred CCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCcchhccccCCEeecc
Q 043332 521 DILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLE 600 (897)
Q Consensus 521 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~ 600 (897)
.++++|++++| .+..+|..++ ++|++|++++|.++.+|. .+++|++|+|++| .++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEEC
T ss_pred CCCcEEEecCC-CcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECc
Confidence 46899999998 7888888653 789999999999999987 6799999999998 4777886 78999999999
Q ss_pred CCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhh
Q 043332 601 ATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 601 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~ 680 (897)
+|.++.+|. .+.+|++|++++|.++.+|.. +++|++|+++. +...... ....+ |+.|+++.|.+..+
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~-N~l~~l~----~~~~~-L~~L~L~~N~l~~l 176 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSD-NQLASLP----ALPSE-LCKLWAYNNQLTSL 176 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCS-SCCSCCC----CCCTT-CCEEECCSSCCSCC
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcC-CcCCCcC----CccCC-CCEEECCCCCCCCC
Confidence 999999988 678999999999999998864 48899999983 3322211 12345 88888887766543
Q ss_pred hhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccccceeEEeccCCcccccccCcccC
Q 043332 681 NIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQ 760 (897)
Q Consensus 681 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 760 (897)
+ ..++.|+.+++++|.+.+.. ..+++|+.|.+++|. ..
T Consensus 177 ~----------------------------~~~~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~-----------l~ 214 (622)
T 3g06_A 177 P----------------------------MLPSGLQELSVSDNQLASLP---TLPSELYKLWAYNNR-----------LT 214 (622)
T ss_dssp C----------------------------CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-----------CS
T ss_pred c----------------------------ccCCCCcEEECCCCCCCCCC---CccchhhEEECcCCc-----------cc
Confidence 2 13345667777777665422 234678888887764 22
Q ss_pred CccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccce
Q 043332 761 GLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKR 840 (897)
Q Consensus 761 ~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~ 840 (897)
.+|. .++ +|+.|++++| .++.++ ..+++|+.|++++| .++.+.. .+++|+.
T Consensus 215 ~l~~--~~~-~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~-------------------~~~~L~~ 265 (622)
T 3g06_A 215 SLPA--LPS-GLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM-------------------LPSGLLS 265 (622)
T ss_dssp SCCC--CCT-TCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-------------------CCTTCCE
T ss_pred ccCC--CCC-CCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc-------------------ccccCcE
Confidence 2332 234 8888888887 455554 24568888888885 5554421 3678888
Q ss_pred eecccCcccccccCCCCcccCCCccEEEecCCCCCccccCCc
Q 043332 841 LGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLKRLSLSL 882 (897)
Q Consensus 841 L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~ 882 (897)
|+|+++ +++.++. ....+++|+.|++++|+--...|..+
T Consensus 266 L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 266 LSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp EECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred EeCCCC-CCCcCCH--HHhhccccCEEEecCCCCCCcCHHHH
Confidence 888887 5666654 45567888888888886544444433
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=3.7e-18 Score=184.37 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=42.3
Q ss_pred CCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCC
Q 043332 546 HGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYS 624 (897)
Q Consensus 546 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 624 (897)
..+++|+|++|.++.+|..++.+++|++|+|++|. ++.+| .++++++|++|++++|.+..+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 44555555555555555555555555555555542 33444 35555555555555555555555555555555555555
Q ss_pred CC
Q 043332 625 LP 626 (897)
Q Consensus 625 ~~ 626 (897)
|.
T Consensus 160 n~ 161 (328)
T 4fcg_A 160 CP 161 (328)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=2.1e-18 Score=185.03 Aligned_cols=142 Identities=23% Similarity=0.304 Sum_probs=71.4
Q ss_pred EEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC---CcccccCcccceeecc
Q 043332 501 RVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL---PSSVSDLTNLRSLLLR 577 (897)
Q Consensus 501 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~L~ 577 (897)
.++.+++.++.+|.... ++|++|++++| .+..+|..+|.++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP---SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCC---TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCC---CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34444444555544321 34555555555 44455554445555555555555555433 3344445555555555
Q ss_pred ccccccCCc-chhccccCCEeeccCCcCcccCc--cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 578 YCLRLRRVP-SVAKLLALHYLDLEATRIEEVPE--GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 578 ~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+| .+..+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+...++..++.+++|++|+++
T Consensus 87 ~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 87 FN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp SC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 54 233344 35555555555555555554442 35555555555555555554444444555555555554
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=9.3e-18 Score=177.86 Aligned_cols=170 Identities=24% Similarity=0.323 Sum_probs=135.5
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeeccc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 578 (897)
+.++.+++.+..+|... .++|++|++++| .+..++...|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56788888898888643 468999999999 78888877789999999999999999876 77899999999999999
Q ss_pred cccccCC-c-chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 579 CLRLRRV-P-SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 579 ~~~~~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
|..++.+ | .+..+++|++|++++|.+..+ |..+.++++|++|++++|.+..++...++++++|++|+++ ++.....
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH-GNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC-CCccccc
Confidence 8757777 4 599999999999999999877 5568999999999999999999988878889999999988 2322222
Q ss_pred cHHHHHhhhcccceeEEEec
Q 043332 656 TVEEAARLSNRLDTFEGHFS 675 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~ 675 (897)
....+..+++ |+.|+++.|
T Consensus 169 ~~~~~~~l~~-L~~L~l~~n 187 (285)
T 1ozn_A 169 PERAFRGLHS-LDRLLLHQN 187 (285)
T ss_dssp CTTTTTTCTT-CCEEECCSS
T ss_pred CHHHhcCccc-cCEEECCCC
Confidence 2222344444 554444443
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=8.3e-18 Score=180.29 Aligned_cols=189 Identities=22% Similarity=0.246 Sum_probs=149.7
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccC---ChhHhhCCCCccEEEecCCCC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTI---PECFFVHMHGLKVLNLSHTDI 558 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~i 558 (897)
.+..+..+|.. .+.++++|++++|.+..+|...+..+++|++|++++| .+..+ +.. +..+++|++|++++|.+
T Consensus 15 ~~~~l~~ip~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 15 NSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp CSSCCSSCCSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCSE
T ss_pred CCCCcccCCCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCcc
Confidence 34456677764 4568999999999999999888899999999999999 55544 444 46799999999999999
Q ss_pred CcCCcccccCcccceeeccccccccCCc---chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCc-CCCC
Q 043332 559 EVLPSSVSDLTNLRSLLLRYCLRLRRVP---SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKK-FPTG 633 (897)
Q Consensus 559 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp---~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~ 633 (897)
+.+|..+..+++|++|++++|. ++.++ .+..+++|++|++++|.+... |..+..+++|++|++++|.+.. ..+.
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 9999999999999999999985 44443 489999999999999998854 5568999999999999999875 3334
Q ss_pred cccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccc
Q 043332 634 ILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 634 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
.++.+++|++|+++ ++.........+..+++ |+.|+++.|.+
T Consensus 170 ~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~-L~~L~L~~N~l 211 (306)
T 2z66_A 170 IFTELRNLTFLDLS-QCQLEQLSPTAFNSLSS-LQVLNMSHNNF 211 (306)
T ss_dssp CCTTCTTCCEEECT-TSCCCEECTTTTTTCTT-CCEEECTTSCC
T ss_pred HHhhCcCCCEEECC-CCCcCCcCHHHhcCCCC-CCEEECCCCcc
Confidence 47899999999998 33333333345556666 66666665544
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.3e-17 Score=189.14 Aligned_cols=172 Identities=24% Similarity=0.304 Sum_probs=131.9
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L 576 (897)
....++..++.+..+|.... ++++.|++++| .+..++...|.++++|++|+|++|.++.++ ..+.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP---SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC---TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCCCC---CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 34567777888888886543 68899999998 677777777789999999999999988665 66888999999999
Q ss_pred cccccccCCc--chhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCC-CCCcCCCCcccCCcccCeEecccCchh
Q 043332 577 RYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSL-PLKKFPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 577 ~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
++| .++.+| .+..+++|++|++++|.+..+|. .+.++++|++|++++| .+..++...+.++++|++|+++. +..
T Consensus 131 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l 208 (452)
T 3zyi_A 131 FDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNI 208 (452)
T ss_dssp CSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCC
T ss_pred CCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Ccc
Confidence 997 456666 38889999999999999888776 5888999999999885 47778877788889999998882 222
Q ss_pred hhhcHHHHHhhhcccceeEEEeccch
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
.. +..+..+++ |+.|+++.|.+.
T Consensus 209 ~~--~~~~~~l~~-L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 209 KD--MPNLTPLVG-LEELEMSGNHFP 231 (452)
T ss_dssp SS--CCCCTTCTT-CCEEECTTSCCS
T ss_pred cc--ccccccccc-ccEEECcCCcCc
Confidence 21 123455566 667766665543
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=6.3e-17 Score=169.80 Aligned_cols=189 Identities=26% Similarity=0.417 Sum_probs=151.9
Q ss_pred CCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC
Q 043332 483 GLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP 562 (897)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 562 (897)
+..+..+|.. .+.++++|++++|.+..++...+..+++|++|++++| .+..++..+|.++++|++|++++|.++.+|
T Consensus 25 ~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 25 SKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp TSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 3455566654 3467899999999999888877888999999999988 677888888888999999999999998777
Q ss_pred cc-cccCcccceeeccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCC
Q 043332 563 SS-VSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRL 638 (897)
Q Consensus 563 ~~-i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (897)
.. +..+++|++|++++|. ++.+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+..+++..+.++
T Consensus 102 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred HhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 54 5788999999999874 45555 488999999999999999888766 7889999999999999998888778889
Q ss_pred cccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccc
Q 043332 639 RDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
++|++|+++ ++.........+..+++ |+.|+++.|.+
T Consensus 181 ~~L~~L~L~-~N~l~~~~~~~~~~l~~-L~~L~l~~N~~ 217 (270)
T 2o6q_A 181 TELKTLKLD-NNQLKRVPEGAFDSLEK-LKMLQLQENPW 217 (270)
T ss_dssp TTCCEEECC-SSCCSCCCTTTTTTCTT-CCEEECCSSCB
T ss_pred CCcCEEECC-CCcCCcCCHHHhccccC-CCEEEecCCCe
Confidence 999999998 34444333344667777 88888887754
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=184.42 Aligned_cols=172 Identities=26% Similarity=0.353 Sum_probs=134.1
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L 576 (897)
....++..++.+..+|.... ++++.|++++| .+..++...|.++++|++|+|++|.++.++ ..+.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS---TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC---TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCCC---CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 34567777888888887654 68899999998 677787777899999999999999998775 56888999999999
Q ss_pred cccccccCCc--chhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCC-CCcCCCCcccCCcccCeEecccCchh
Q 043332 577 RYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLP-LKKFPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 577 ~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
++| .++.+| .+..+++|++|++++|.+..+|. .+.++++|++|++++|+ +..++...+.++++|++|+++. +..
T Consensus 120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l 197 (440)
T 3zyj_A 120 FDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNL 197 (440)
T ss_dssp CSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCC
T ss_pred CCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcC
Confidence 997 566666 48899999999999999988776 58889999999999854 7778877788899999999882 222
Q ss_pred hhhcHHHHHhhhcccceeEEEeccch
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
. .+..+..+++ |+.|+++.|.+.
T Consensus 198 ~--~~~~~~~l~~-L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 198 R--EIPNLTPLIK-LDELDLSGNHLS 220 (440)
T ss_dssp S--SCCCCTTCSS-CCEEECTTSCCC
T ss_pred c--cccccCCCcc-cCEEECCCCccC
Confidence 2 1123455566 667766665543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=2.3e-18 Score=185.46 Aligned_cols=266 Identities=12% Similarity=0.063 Sum_probs=188.2
Q ss_pred CccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceeeccccccccCCcchhccccCCEeecc
Q 043332 522 ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLE 600 (897)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~ 600 (897)
.++..+++.+ .+...+..++..+++|++|++++|.++.++ ..+..+++|++|+|++|. ++..+.+..+++|++|+++
T Consensus 11 ~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECC
T ss_pred ceeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECc
Confidence 3445555555 566667777888889999999999999776 578999999999999984 4545568999999999999
Q ss_pred CCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchhh
Q 043332 601 ATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 601 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~ 680 (897)
+|.++.+|. .++|++|++++|.+..++.. .+++|++|+++ .+.........+..+++ |+.|+++.|.+...
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~-~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLA-NNKITMLRDLDEGCRSR-VQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECC-SSCCCSGGGBCTGGGSS-EEEEECTTSCCCEE
T ss_pred CCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECC-CCCCCCccchhhhccCC-CCEEECCCCCCCcc
Confidence 999887763 38999999999999888754 46778888888 33333332334455666 77776665544321
Q ss_pred hhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCcccCccccceeEEeccCCcccccccCcccC
Q 043332 681 NIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQ 760 (897)
Q Consensus 681 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 760 (897)
... .....+++|+.|.++++. ..
T Consensus 160 ~~~----------------------------------------------~~~~~l~~L~~L~L~~N~-----------l~ 182 (317)
T 3o53_A 160 NFA----------------------------------------------ELAASSDTLEHLNLQYNF-----------IY 182 (317)
T ss_dssp EGG----------------------------------------------GGGGGTTTCCEEECTTSC-----------CC
T ss_pred cHH----------------------------------------------HHhhccCcCCEEECCCCc-----------Cc
Confidence 000 001245788888888875 22
Q ss_pred CccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccce
Q 043332 761 GLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKR 840 (897)
Q Consensus 761 ~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~ 840 (897)
.++....++ +|++|++++|. ++.+++. +..+++|+.|++++| .++.+.. ....+++|+.
T Consensus 183 ~~~~~~~l~-~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~----------------~~~~l~~L~~ 241 (317)
T 3o53_A 183 DVKGQVVFA-KLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVLIEK----------------ALRFSQNLEH 241 (317)
T ss_dssp EEECCCCCT-TCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCEECT----------------TCCCCTTCCE
T ss_pred ccccccccc-cCCEEECCCCc-CCcchhh--hcccCcccEEECcCC-cccchhh----------------HhhcCCCCCE
Confidence 234444567 99999999985 5666554 668999999999996 6665431 1235899999
Q ss_pred eecccCccc-ccccCCCCcccCCCccEEEecCCCCCccc
Q 043332 841 LGFYFLPEF-KSFCSNNGVLVCNSLQEIEVRGCPKLKRL 878 (897)
Q Consensus 841 L~L~~~~~L-~~~~~~~~~~~~p~L~~L~i~~C~~L~~l 878 (897)
|++++++-. ..+.. ....+++|+.|++.+|+.++..
T Consensus 242 L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 242 FDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHHHHSS
T ss_pred EEccCCCccCcCHHH--HHhccccceEEECCCchhccCC
Confidence 999998754 22221 2334678999998877666554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=4.6e-18 Score=193.87 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=102.6
Q ss_pred CCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCcchhccccCCEee
Q 043332 519 HCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLD 598 (897)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~ 598 (897)
.+++|++|++++| .+..+++..|..+++|++|+|++|.++..++ ++.+++|++|+|++| .++.+| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC---CCCCcCEEE
Confidence 4557888888877 5666666666788888888888888775554 777888888888877 344444 236788888
Q ss_pred ccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHH-hhhcccceeEEEeccc
Q 043332 599 LEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAA-RLSNRLDTFEGHFSTL 677 (897)
Q Consensus 599 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~~l 677 (897)
+++|.+..+|.. .+++|++|++++|.+..+++..++.+++|++|+++ ++......+..+. .+++ |+.|+++.|.+
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~l~~~l~~-L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSDT-LEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT-TSCCCEEEGGGGGGGTTT-CCEEECTTSCC
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC-CCCCCCcChHHHhhhCCc-ccEEecCCCcc
Confidence 888877776543 45778888888888777766556777888888877 3333333344443 4566 77777666654
Q ss_pred h
Q 043332 678 K 678 (897)
Q Consensus 678 ~ 678 (897)
.
T Consensus 182 ~ 182 (487)
T 3oja_A 182 Y 182 (487)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=3.3e-17 Score=193.07 Aligned_cols=173 Identities=13% Similarity=0.059 Sum_probs=86.4
Q ss_pred ccccEEEccccccccCCC----CCCCCCCCccEEEccCCCCcccCC----hhHhhCCCCccEEEecCCCCCcCCcccccC
Q 043332 497 ENLERVSLMKNNIKEIPS----YMSPHCDILSTLLLQANGNLWTIP----ECFFVHMHGLKVLNLSHTDIEVLPSSVSDL 568 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l 568 (897)
+++++|++++|.+..... .....+++|++|++++| .+..+. ..++.++++|++|++++|.+..+|..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 455666666555433211 11224556666666555 222111 122345566666666666555555555566
Q ss_pred cccceeeccccccc---cCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCC-CcccCCcccCe
Q 043332 569 TNLRSLLLRYCLRL---RRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPT-GILPRLRDLYK 643 (897)
Q Consensus 569 ~~L~~L~L~~~~~~---~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 643 (897)
++|++|+++.+... ...+ .+..+++|+.|+++++....+|..+..+++|++|++++|.+..... .+++++++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 66666666543221 1112 3555556666666555444555556666666666666665432111 22355666666
Q ss_pred EecccCchhhhhcHHHH-HhhhcccceeEEE
Q 043332 644 LKLSFGREALRETVEEA-ARLSNRLDTFEGH 673 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~l-~~l~~~L~~L~l~ 673 (897)
|++. ++.....+..+ ..+++ |+.|+++
T Consensus 323 L~L~--~~~~~~~l~~~~~~~~~-L~~L~L~ 350 (592)
T 3ogk_B 323 LETR--NVIGDRGLEVLAQYCKQ-LKRLRIE 350 (592)
T ss_dssp EEEE--GGGHHHHHHHHHHHCTT-CCEEEEE
T ss_pred Eecc--CccCHHHHHHHHHhCCC-CCEEEee
Confidence 6665 23333333333 34455 6666666
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.2e-16 Score=168.30 Aligned_cols=189 Identities=22% Similarity=0.202 Sum_probs=139.5
Q ss_pred CCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-
Q 043332 484 LRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP- 562 (897)
Q Consensus 484 ~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp- 562 (897)
..+..+|.. .+.++++|++++|.+..++...+..+++|++|++++| .+..++...|.++++|++|++++|.++.++
T Consensus 17 ~~l~~ip~~--l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 17 LNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp SCCSSCCSS--SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccccCCC--CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 344556654 3467899999999998888777788899999999988 677777777788999999999999988665
Q ss_pred cccccCcccceeeccccccccCCc--chhccccCCEeeccCCcCcc--cCccccCCCCCCEEeCCCCCCCcCCCCcccCC
Q 043332 563 SSVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEE--VPEGMEMLENLSYLYLYSLPLKKFPTGILPRL 638 (897)
Q Consensus 563 ~~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (897)
..+..+++|++|++++|. +..++ .++++++|++|++++|.+.. +|..++++++|++|++++|.+..++...+..+
T Consensus 94 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 568889999999999874 44444 58889999999999998876 67888999999999999998888776656666
Q ss_pred cccC----eEecccCchhhhhcHHHHHhhhcccceeEEEeccchh
Q 043332 639 RDLY----KLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 639 ~~L~----~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
++|+ .|+++ .+........ .....+ |+.|+++.|.+..
T Consensus 173 ~~L~~l~l~L~ls-~n~l~~~~~~-~~~~~~-L~~L~L~~n~l~~ 214 (276)
T 2z62_A 173 HQMPLLNLSLDLS-LNPMNFIQPG-AFKEIR-LKELALDTNQLKS 214 (276)
T ss_dssp HTCTTCCEEEECC-SSCCCEECTT-SSCSCC-EEEEECCSSCCSC
T ss_pred hhccccceeeecC-CCcccccCcc-ccCCCc-ccEEECCCCceee
Confidence 6666 66666 2222211111 112224 6677776665543
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=2.3e-16 Score=166.93 Aligned_cols=176 Identities=27% Similarity=0.315 Sum_probs=121.4
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
.+++.++++++.++.+|.... +++++|++++| .+..++...|.++++|++|++++|.++.+|.. +.+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 456777777777777776543 56777777777 56666656667777777777777777766653 67777777777
Q ss_pred cccccccCCc-chhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhh
Q 043332 577 RYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALR 654 (897)
Q Consensus 577 ~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (897)
++| .++.+| .+..+++|++|++++|.++.+|. .+..+++|++|++++|.+..+|++.+..+++|+.|+++ ++....
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~ 162 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTE 162 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCSC
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC-CCcCCc
Confidence 776 456666 57777777777777777777664 47777777777777777777777767777777777777 333333
Q ss_pred hcHHHHHhhhcccceeEEEeccchhh
Q 043332 655 ETVEEAARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 655 ~~~~~l~~l~~~L~~L~l~~~~l~~~ 680 (897)
.....+..+++ |+.|+++.|.+..+
T Consensus 163 l~~~~~~~l~~-L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 163 LPAGLLNGLEN-LDTLLLQENSLYTI 187 (290)
T ss_dssp CCTTTTTTCTT-CCEEECCSSCCCCC
T ss_pred cCHHHhcCcCC-CCEEECCCCcCCcc
Confidence 22334456666 77777777766543
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=5.7e-17 Score=166.86 Aligned_cols=189 Identities=13% Similarity=0.211 Sum_probs=159.2
Q ss_pred cCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecC-CCCCcCCc-
Q 043332 486 LQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSH-TDIEVLPS- 563 (897)
Q Consensus 486 ~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp~- 563 (897)
+..+|. .+.+++.|++++|.++.++...+..+++|++|++++|..+..++...|.++++|++|++++ |.++.+|.
T Consensus 23 l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 567776 4568999999999999999888889999999999999548888887789999999999998 89998874
Q ss_pred ccccCcccceeeccccccccCCcchhccccCC---EeeccCC-cCcccCcc-ccCCCCCC-EEeCCCCCCCcCCCCcccC
Q 043332 564 SVSDLTNLRSLLLRYCLRLRRVPSVAKLLALH---YLDLEAT-RIEEVPEG-MEMLENLS-YLYLYSLPLKKFPTGILPR 637 (897)
Q Consensus 564 ~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~l~~ 637 (897)
.+..+++|++|++++| .++.+|.+..+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|.+..+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 6789999999999998 566788888888888 9999999 99998875 89999999 9999999999999887666
Q ss_pred CcccCeEecccCchhhhhcHHHHHhh-hcccceeEEEeccchhh
Q 043332 638 LRDLYKLKLSFGREALRETVEEAARL-SNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 638 l~~L~~L~l~~~~~~~~~~~~~l~~l-~~~L~~L~l~~~~l~~~ 680 (897)
++|++|+++.+..........+..+ ++ |+.|+++.|.+..+
T Consensus 179 -~~L~~L~L~~n~~l~~i~~~~~~~l~~~-L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDKDAFGGVYSG-PSLLDVSQTSVTAL 220 (239)
T ss_dssp -CEEEEEECTTCTTCCEECTTTTTTCSBC-CSEEECTTCCCCCC
T ss_pred -CCCCEEEcCCCCCcccCCHHHhhccccC-CcEEECCCCccccC
Confidence 8999999983222444434556777 78 99999988776543
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=3.6e-18 Score=194.64 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=66.7
Q ss_pred cccccceeeecccccCC-----CCcccCccccceeEEeccCCcccccccCcccCCccc--cccccccccEEEEecCCCCC
Q 043332 712 LEVDKSVSLMNCKICER-----EEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN--IGKFSHDLKVLSFVRCPNLK 784 (897)
Q Consensus 712 ~~~l~~l~l~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~l~~~L~~L~l~~c~~l~ 784 (897)
.+.++.+++++|.+... ...+..+++|+.|+++++. +.... ...+.. ....+ +|++|++++|. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~-----~~~l~~~l~~~~~-~L~~L~L~~n~-l~ 326 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG-----ARLLCETLLEPGC-QLESLWVKSCS-FT 326 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH-----HHHHHHHHTSTTC-CCCEEECTTSC-CB
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHH-----HHHHHHHhccCCc-cceeeEcCCCC-Cc
Confidence 45566667766655331 1113345677777777663 11100 000000 01124 77777777775 33
Q ss_pred CCCh---hhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccc-----cccCCC
Q 043332 785 NLFS---LQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFK-----SFCSNN 856 (897)
Q Consensus 785 ~l~~---~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~-----~~~~~~ 856 (897)
.... ...+..+++|++|++++| .+.+.... .+.. .-....++|++|++++|. ++ .+..
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~-------~l~~---~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~-- 392 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR-------ELCQ---GLGQPGSVLRVLWLADCD-VSDSSCSSLAA-- 392 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH-------HHHH---HHTSTTCCCCEEECTTSC-CCHHHHHHHHH--
T ss_pred hHHHHHHHHHHhhCCCccEEEccCC-ccccccHH-------HHHH---HHcCCCCceEEEECCCCC-CChhhHHHHHH--
Confidence 2211 123445677777777775 34332100 0000 000025677777777773 44 2222
Q ss_pred CcccCCCccEEEecCCC
Q 043332 857 GVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 857 ~~~~~p~L~~L~i~~C~ 873 (897)
....+++|++|++++|+
T Consensus 393 ~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHCCCCCEEECCSSS
T ss_pred HHHhCCCccEEECCCCC
Confidence 22335677777777774
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=4.5e-16 Score=163.25 Aligned_cols=177 Identities=26% Similarity=0.430 Sum_probs=150.1
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCccc-ccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSV-SDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l~~L~~L~ 575 (897)
...+.++++++.++.+|.... ++++.|++++| .+..++...|.++++|++|++++|.++.+|..+ ..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC---TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC---CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 356789999999999987543 68999999999 788888877899999999999999999888764 7899999999
Q ss_pred ccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchh
Q 043332 576 LRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 576 L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
+++| .++.+| .+..+++|++|++++|.+..+|.. ++.+++|++|++++|.+..+|...++.+++|++|+++ ++..
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l 169 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY-NNQL 169 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCC
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec-CCcC
Confidence 9998 466666 479999999999999999987754 7899999999999999999999888999999999998 3444
Q ss_pred hhhcHHHHHhhhcccceeEEEeccchhh
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~~~ 680 (897)
.......+..+++ |+.|+++.|.+..+
T Consensus 170 ~~~~~~~~~~l~~-L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 170 KRVPEGAFDKLTE-LKTLKLDNNQLKRV 196 (270)
T ss_dssp SCCCTTTTTTCTT-CCEEECCSSCCSCC
T ss_pred cEeChhHhccCCC-cCEEECCCCcCCcC
Confidence 4444445677888 99999988876543
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=4.1e-18 Score=194.22 Aligned_cols=344 Identities=16% Similarity=0.143 Sum_probs=205.2
Q ss_pred ccccEEEccccccccCCC-CCCCCCCCccEEEccCCCCccc-----CChhHhhCCCCccEEEecCCCCCc-CCccc-ccC
Q 043332 497 ENLERVSLMKNNIKEIPS-YMSPHCDILSTLLLQANGNLWT-----IPECFFVHMHGLKVLNLSHTDIEV-LPSSV-SDL 568 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i-~~l 568 (897)
.++++|++++|.+...+. ..+..+++|++|++++| .+.. ++ ..+..+++|++|++++|.++. .+..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 467888888887765432 22456788888888888 3442 22 335778889999998888763 22222 234
Q ss_pred c----ccceeecccccccc----CCc-chhccccCCEeeccCCcCccc-Cc----c-ccCCCCCCEEeCCCCCCCcCC--
Q 043332 569 T----NLRSLLLRYCLRLR----RVP-SVAKLLALHYLDLEATRIEEV-PE----G-MEMLENLSYLYLYSLPLKKFP-- 631 (897)
Q Consensus 569 ~----~L~~L~L~~~~~~~----~lp-~~~~l~~L~~L~l~~~~l~~l-p~----~-~~~l~~L~~L~l~~~~~~~~~-- 631 (897)
. +|++|++++|.... .+| .+.++++|++|++++|.+... +. . .....+|++|++++|.+....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 68888888885331 345 578888888888888877532 22 2 223567888888888776532
Q ss_pred --CCcccCCcccCeEecccCchhhhhcHHHHHh-----hhcccceeEEEeccchhhhhhhhccCCCCceeeEEEeccccc
Q 043332 632 --TGILPRLRDLYKLKLSFGREALRETVEEAAR-----LSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDM 704 (897)
Q Consensus 632 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-----l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 704 (897)
...++.+++|++|+++ ++......+..+.. .++ |+.|+++.|.+....... +
T Consensus 161 ~l~~~l~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~~-L~~L~L~~n~l~~~~~~~-------------------l 219 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVS-NNDINEAGVRVLCQGLKDSPCQ-LEALKLESCGVTSDNCRD-------------------L 219 (461)
T ss_dssp HHHHHHHHCTTCCEEECC-SSBCHHHHHHHHHHHHHHSCCC-CCEEECTTSCCBTTHHHH-------------------H
T ss_pred HHHHHHhhCCCCCEEECc-CCCcchHHHHHHHHHHhcCCCC-ceEEEccCCCCcHHHHHH-------------------H
Confidence 1224667888888888 34444444444433 336 888888877665421100 0
Q ss_pred ccccccccccccceeeecccccCCC-----C-cccCccccceeEEeccCCcccccccCcccCCccc-cccccccccEEEE
Q 043332 705 RGILITDLEVDKSVSLMNCKICERE-----E-PIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVN-IGKFSHDLKVLSF 777 (897)
Q Consensus 705 ~~~~~~~~~~l~~l~l~~~~~~~~~-----~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l 777 (897)
+..+. .++.++.+++++|.+.... + ....+++|+.|++++|. +...+ ...++. +..++ +|++|++
T Consensus 220 ~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~-----~~~l~~~l~~~~-~L~~L~L 291 (461)
T 1z7x_W 220 CGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKG-----CGDLCRVLRAKE-SLKELSL 291 (461)
T ss_dssp HHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHH-----HHHHHHHHHHCT-TCCEEEC
T ss_pred HHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHH-----HHHHHHHHhhCC-CcceEEC
Confidence 11111 4456777777777653321 1 12347899999999884 22210 001222 44577 9999999
Q ss_pred ecCCCCCCCChhhhh----hccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCccccccc
Q 043332 778 VRCPNLKNLFSLQLL----PALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFC 853 (897)
Q Consensus 778 ~~c~~l~~l~~~~~l----~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~ 853 (897)
++|. +++....... ...++|+.|++++|. +...... .+. .....+++|++|+|+++ .++...
T Consensus 292 s~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~-------~l~----~~l~~~~~L~~L~Ls~n-~i~~~~ 357 (461)
T 1z7x_W 292 AGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS-------HFS----SVLAQNRFLLELQISNN-RLEDAG 357 (461)
T ss_dssp TTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH-------HHH----HHHHHCSSCCEEECCSS-BCHHHH
T ss_pred CCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHH-------HHH----HHHhhCCCccEEEccCC-cccccc
Confidence 9985 4332211111 123699999999984 3322100 000 01124799999999998 455432
Q ss_pred CC---CCc-ccCCCccEEEecCCCCCc-----cccCCccccc
Q 043332 854 SN---NGV-LVCNSLQEIEVRGCPKLK-----RLSLSLPLLD 886 (897)
Q Consensus 854 ~~---~~~-~~~p~L~~L~i~~C~~L~-----~lp~~~~~l~ 886 (897)
.. ... ...++|++|++++| .++ .+|..+..+.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANH 398 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCC
Confidence 10 001 11579999999999 455 5665544433
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=1.8e-17 Score=178.01 Aligned_cols=241 Identities=17% Similarity=0.109 Sum_probs=119.3
Q ss_pred CCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC--cCCcccc-------cCcccceeeccccccccCCc-ch--
Q 043332 521 DILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE--VLPSSVS-------DLTNLRSLLLRYCLRLRRVP-SV-- 588 (897)
Q Consensus 521 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~~~~lp-~~-- 588 (897)
++|+.|++++| .+ .+|..+... |++|++++|.++ .+|..+. .+.+|++|++++|.....+| .+
T Consensus 43 ~~L~~l~l~~n-~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVD-TE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCC-TT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccc-cc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44555555555 23 445444322 555555555553 2343333 45555555555554333444 33
Q ss_pred hccccCCEeeccCCcCcccCccccCC-----CCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh--cHHHH-
Q 043332 589 AKLLALHYLDLEATRIEEVPEGMEML-----ENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE--TVEEA- 660 (897)
Q Consensus 589 ~~l~~L~~L~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~l- 660 (897)
..+++|++|++++|.+..+|..++.+ ++|++|++++|.+..+++..++++++|++|+++. +..... .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD-NPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS-CTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC-CCcCcchHHHHHHH
Confidence 55555555555555555555544444 5566666665555555544455555666666552 221111 11222
Q ss_pred -HhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCC--CcccCccc
Q 043332 661 -ARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICERE--EPIVLPED 737 (897)
Q Consensus 661 -~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~l~~~~~ 737 (897)
..+++ |+.|+++.|.+..++.... .+...++.++.+++++|.+.+.. +.+..+++
T Consensus 197 ~~~l~~-L~~L~L~~N~l~~~~~~~~---------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 197 PLKFPT-LQVLALRNAGMETPSGVCS---------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp TTSCTT-CCEEECTTSCCCCHHHHHH---------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred hccCCC-CCEEECCCCcCcchHHHHH---------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 44455 5555555555442221110 00002334555555555554433 22344567
Q ss_pred cceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEecc
Q 043332 738 VQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVC 806 (897)
Q Consensus 738 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 806 (897)
|+.|+++++. ...+|..- ++ +|++|++++|. ++.+|. +..+++|+.|+++++
T Consensus 255 L~~L~Ls~N~-----------l~~ip~~~-~~-~L~~L~Ls~N~-l~~~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 255 LNSLNLSFTG-----------LKQVPKGL-PA-KLSVLDLSYNR-LDRNPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCEEECTTSC-----------CSSCCSSC-CS-EEEEEECCSSC-CCSCCC---TTTSCEEEEEECTTC
T ss_pred CCEEECCCCc-----------cChhhhhc-cC-CceEEECCCCC-CCCChh---HhhCCCCCEEeccCC
Confidence 7777777764 12233211 14 77777777764 455433 446677777777764
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=8.7e-16 Score=161.79 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=129.3
Q ss_pred EEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceeecccc
Q 043332 501 RVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLLLRYC 579 (897)
Q Consensus 501 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~ 579 (897)
.+.-.+..+..+|.... ++|++|++++| .+..++...|.++++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~---~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP---FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC---CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 34445566777776542 57999999999 7788887678999999999999999987765 6889999999999998
Q ss_pred ccccCCc-chhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCCCCcCC-CCcccCCcccCeEecccCchhhhhc
Q 043332 580 LRLRRVP-SVAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLPLKKFP-TGILPRLRDLYKLKLSFGREALRET 656 (897)
Q Consensus 580 ~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 656 (897)
......+ .+.++++|++|++++|.+..++. .++++++|++|++++|.+..++ +..++++++|++|+++ ++......
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls-~N~l~~~~ 165 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIY 165 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC-SSCCCEEC
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC-CCCCCcCC
Confidence 5444444 58999999999999999988766 5899999999999999988743 3447899999999998 33333333
Q ss_pred HHHHHhhhcccc----eeEEEeccc
Q 043332 657 VEEAARLSNRLD----TFEGHFSTL 677 (897)
Q Consensus 657 ~~~l~~l~~~L~----~L~l~~~~l 677 (897)
...+..+.+ |+ .|+++.|.+
T Consensus 166 ~~~~~~l~~-L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 166 CTDLRVLHQ-MPLLNLSLDLSLNPM 189 (276)
T ss_dssp GGGGHHHHT-CTTCCEEEECCSSCC
T ss_pred HHHhhhhhh-ccccceeeecCCCcc
Confidence 334444444 44 455544443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=5.2e-16 Score=164.22 Aligned_cols=187 Identities=21% Similarity=0.211 Sum_probs=157.4
Q ss_pred CCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC
Q 043332 483 GLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP 562 (897)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 562 (897)
+..+..+|.. .+.+++.|++++|.+..++...+..+++|+.|++++| .+..++.. ..+++|++|++++|.++.+|
T Consensus 19 ~~~l~~ip~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~ 93 (290)
T 1p9a_G 19 KRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGTLDLSHNQLQSLP 93 (290)
T ss_dssp TSCCSSCCSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCEEECCSSCCSSCC
T ss_pred CCCCCcCCCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC--CCCCcCCEEECCCCcCCcCc
Confidence 3455667754 3468999999999999988777889999999999999 67777653 78999999999999999999
Q ss_pred cccccCcccceeeccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCc
Q 043332 563 SSVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLR 639 (897)
Q Consensus 563 ~~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 639 (897)
..+..+++|++|++++| .++.+| .+.++++|++|++++|.+..+|.. +..+++|++|++++|.++.+|.+.+.+++
T Consensus 94 ~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred hhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 99999999999999998 556665 599999999999999999998876 68899999999999999999999889999
Q ss_pred ccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccch
Q 043332 640 DLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 640 ~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
+|++|+++ ++... ..+..+..+.+ |+.|+++.|.+.
T Consensus 173 ~L~~L~L~-~N~l~-~ip~~~~~~~~-L~~l~L~~Np~~ 208 (290)
T 1p9a_G 173 NLDTLLLQ-ENSLY-TIPKGFFGSHL-LPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEECC-SSCCC-CCCTTTTTTCC-CSEEECCSCCBC
T ss_pred CCCEEECC-CCcCC-ccChhhccccc-CCeEEeCCCCcc
Confidence 99999998 33332 33344555667 999999877653
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=6.1e-17 Score=190.78 Aligned_cols=350 Identities=15% Similarity=0.103 Sum_probs=216.9
Q ss_pred cccEEEccccc-cc--cCCCCCCCCCCCccEEEccCCCCcccC----ChhHhhCCCCccEEEecCCCCC-----cCCccc
Q 043332 498 NLERVSLMKNN-IK--EIPSYMSPHCDILSTLLLQANGNLWTI----PECFFVHMHGLKVLNLSHTDIE-----VLPSSV 565 (897)
Q Consensus 498 ~l~~l~l~~~~-~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i 565 (897)
++++|+++++. +. .++ .....|++|++|++++| .+... ...++..+++|++|++++|.++ .++..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLL-SIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHH-HHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHH-HHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 48888887765 11 111 12236788999999988 33332 1234567889999999988876 334455
Q ss_pred ccCcccceeeccccccccCCc-chhccccCCEeeccCCcC----cccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcc
Q 043332 566 SDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRI----EEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRD 640 (897)
Q Consensus 566 ~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l----~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 640 (897)
..+++|++|++++|. +..+| .+.++++|++|+++++.. ...+..+..+++|++|+++++....+|.. +..+++
T Consensus 217 ~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~ 294 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQ 294 (592)
T ss_dssp HHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGG
T ss_pred hhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCC
Confidence 678899999999874 45566 688889999999975422 23455678888999999887765555543 578899
Q ss_pred cCeEecccCchhhhhcH-HHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEe-----------ccccc--cc
Q 043332 641 LYKLKLSFGREALRETV-EEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLL-----------SASDM--RG 706 (897)
Q Consensus 641 L~~L~l~~~~~~~~~~~-~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~-----------~~~~~--~~ 706 (897)
|++|+++.+. .....+ ..+..+++ |+.|++. +.+.+...........+|+.|.+.. +.... ..
T Consensus 295 L~~L~Ls~~~-l~~~~~~~~~~~~~~-L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 295 IRKLDLLYAL-LETEDHCTLIQKCPN-LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp CCEEEETTCC-CCHHHHHHHHTTCTT-CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CcEEecCCCc-CCHHHHHHHHHhCcC-CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 9999998433 444444 34577888 9999998 4433221111112345688888873 11111 11
Q ss_pred ccccccccccceeeecccccCCCC-ccc-CccccceeEEeccC---CcccccccCcccCCccc-cccccccccEEEEecC
Q 043332 707 ILITDLEVDKSVSLMNCKICEREE-PIV-LPEDVQFLQMFEVS---DVASLNDVLPREQGLVN-IGKFSHDLKVLSFVRC 780 (897)
Q Consensus 707 ~~~~~~~~l~~l~l~~~~~~~~~~-~l~-~~~~L~~L~l~~~~---~~~~~~~~~~~~~~l~~-~~~l~~~L~~L~l~~c 780 (897)
.+...++.|+.+.+..+.+..... .+. .+++|+.|.++++. .++... ...+++. +..++ +|++|+++.|
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p----~~~~~~~~~~~~~-~L~~L~L~~~ 446 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP----LDNGVRSLLIGCK-KLRRFAFYLR 446 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC----CHHHHHHHHHHCT-TCCEEEEECC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch----HHHHHHHHHHhCC-CCCEEEEecC
Confidence 112257788888885555432111 122 37789999998543 222110 0001222 34567 9999999887
Q ss_pred CC-CCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcc
Q 043332 781 PN-LKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVL 859 (897)
Q Consensus 781 ~~-l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~ 859 (897)
.+ +++.........+++|+.|++++|. ++... ... ....+|+|++|+|++|+ ++.........
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~------~~~--------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 510 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG------LME--------FSRGCPNLQKLEMRGCC-FSERAIAAAVT 510 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH------HHH--------HHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCC-CCHHH------HHH--------HHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence 64 3332222233457889999999874 33210 000 11257999999999998 54322111223
Q ss_pred cCCCccEEEecCCCCCc
Q 043332 860 VCNSLQEIEVRGCPKLK 876 (897)
Q Consensus 860 ~~p~L~~L~i~~C~~L~ 876 (897)
.+|+|++|++++|+ ++
T Consensus 511 ~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HCSSCCEEEEESCB-CC
T ss_pred hcCccCeeECcCCc-CC
Confidence 57899999999996 44
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.1e-15 Score=163.59 Aligned_cols=172 Identities=20% Similarity=0.276 Sum_probs=140.5
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 575 (897)
..++++|++.+|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 4578999999998888763 567899999999998 6777776 688999999999999988876 688899999999
Q ss_pred ccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 576 LRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 576 L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
+++| .++.+|.+..+++|++|++++|.+..+|. ++.+++|++|++++|.+..+++ +..+++|++|+++ ++.....
T Consensus 114 l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~-~n~l~~~ 188 (308)
T 1h6u_A 114 LTST-QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD-DNKISDI 188 (308)
T ss_dssp CTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCCC
T ss_pred CCCC-CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECC-CCccCcC
Confidence 9997 56777788899999999999998888776 8889999999999999888776 6889999999998 3333222
Q ss_pred cHHHHHhhhcccceeEEEeccchhhh
Q 043332 656 TVEEAARLSNRLDTFEGHFSTLKDFN 681 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~~l~~~~ 681 (897)
..+..+++ |+.|+++.|.+..+.
T Consensus 189 --~~l~~l~~-L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 189 --SPLASLPN-LIEVHLKNNQISDVS 211 (308)
T ss_dssp --GGGGGCTT-CCEEECTTSCCCBCG
T ss_pred --hhhcCCCC-CCEEEccCCccCccc
Confidence 22677888 999999888766543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.9e-15 Score=154.24 Aligned_cols=161 Identities=25% Similarity=0.379 Sum_probs=119.1
Q ss_pred CCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC
Q 043332 483 GLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP 562 (897)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 562 (897)
+..+..+|.. .+.+++.|++++|.+..++...+..+++|++|++++| .+..++...|.++++|++|++++|.++.+|
T Consensus 23 ~~~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 23 GKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TCCCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccC
Confidence 3345556654 3357788888888887777766777888888888887 666677666777888888888888877665
Q ss_pred c-ccccCcccceeeccccccccCCc-c-hhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCCCCcCCCCcccCC
Q 043332 563 S-SVSDLTNLRSLLLRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLPLKKFPTGILPRL 638 (897)
Q Consensus 563 ~-~i~~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (897)
. .+..+++|++|+|++| .++.+| . +.++++|++|++++|.++.+|. .++.+++|++|++++|.+..+++..+..+
T Consensus 100 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 4 4577788888888876 455555 3 6778888888888888877766 47778888888888888877777667777
Q ss_pred cccCeEecc
Q 043332 639 RDLYKLKLS 647 (897)
Q Consensus 639 ~~L~~L~l~ 647 (897)
++|++|+++
T Consensus 179 ~~L~~L~l~ 187 (251)
T 3m19_A 179 GKLQTITLF 187 (251)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEEee
Confidence 888888877
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=1.6e-15 Score=157.09 Aligned_cols=175 Identities=26% Similarity=0.336 Sum_probs=150.0
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~ 575 (897)
...++++++++.+..+|.... +.++.|++++| .+..++...|.++++|++|+|++|.++.++. .+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 356789999999999987654 68999999999 6778887778999999999999999997754 478999999999
Q ss_pred ccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchh
Q 043332 576 LRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREA 652 (897)
Q Consensus 576 L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (897)
|++|. ++.+| .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|+..++.+++|++|+++ .+..
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l 167 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS-TNQL 167 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCC
T ss_pred CCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC-CCcC
Confidence 99984 55665 489999999999999999998876 6899999999999999999998878999999999998 4444
Q ss_pred hhhcHHHHHhhhcccceeEEEeccch
Q 043332 653 LRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
.......+..+++ |+.|+++.|.+.
T Consensus 168 ~~~~~~~~~~l~~-L~~L~l~~N~~~ 192 (251)
T 3m19_A 168 QSVPHGAFDRLGK-LQTITLFGNQFD 192 (251)
T ss_dssp SCCCTTTTTTCTT-CCEEECCSCCBC
T ss_pred CccCHHHHhCCCC-CCEEEeeCCcee
Confidence 4444456778888 999999988764
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=9.3e-16 Score=161.02 Aligned_cols=174 Identities=25% Similarity=0.368 Sum_probs=131.3
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCccccee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLRSL 574 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L 574 (897)
..+++.|++.+|.+..++. +..+++|++|++++| .+..++ .+..+++|++|++++|.++.+|.. ++.+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4578888888888877653 457888888888888 566554 357888888888888888877654 5788888888
Q ss_pred eccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCch
Q 043332 575 LLRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGRE 651 (897)
Q Consensus 575 ~L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (897)
++++|. ++.+| .++++++|++|++++|.++.+|.. ++.+++|++|++++|.++.+++..++.+++|++|+++ ++.
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~N~ 192 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY-QNQ 192 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSC
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC-CCc
Confidence 888874 45555 378888888888888888877665 5788888888888888888888777888888888887 344
Q ss_pred hhhhcHHHHHhhhcccceeEEEeccc
Q 043332 652 ALRETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
........+..+++ |+.|+++.|.+
T Consensus 193 l~~~~~~~~~~l~~-L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LKSVPDGVFDRLTS-LQYIWLHDNPW 217 (272)
T ss_dssp CSCCCTTTTTTCTT-CCEEECCSSCB
T ss_pred CCccCHHHHhCCcC-CCEEEccCCCc
Confidence 43333344566777 77777766643
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.6e-15 Score=162.25 Aligned_cols=150 Identities=27% Similarity=0.317 Sum_probs=122.5
Q ss_pred CCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCcchhccccCCEe
Q 043332 518 PHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVPSVAKLLALHYL 597 (897)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L 597 (897)
..+++|++|++++| .+..++. +..+++|++|++++|.++.++. +..+++|++|++++| .++.++.+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchhhcCCCCCCEE
Confidence 35789999999998 6777763 6889999999999999998887 899999999999998 47778889999999999
Q ss_pred eccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccc
Q 043332 598 DLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 598 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
++++|.++.+|. +..+++|++|++++|.+..+++ ++.+++|++|+++. +..... ..+..+++ |+.|+++.|.+
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~-n~l~~~--~~l~~l~~-L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN-AQVSDL--TPLANLSK-LTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS-SCCCCC--GGGTTCTT-CCEEECCSSCC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccC-CcCCCC--hhhcCCCC-CCEEECCCCcc
Confidence 999999988875 8999999999999999988876 68889999999883 332221 12666677 77777776655
Q ss_pred hh
Q 043332 678 KD 679 (897)
Q Consensus 678 ~~ 679 (897)
..
T Consensus 186 ~~ 187 (308)
T 1h6u_A 186 SD 187 (308)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=6.7e-17 Score=190.56 Aligned_cols=350 Identities=14% Similarity=0.101 Sum_probs=152.4
Q ss_pred cccEEEccccccccCCCC-CCCCCCCccEEEccCCCCcccC-ChhHhhCCCCccEEEecCCCCCc-----CCcccccCcc
Q 043332 498 NLERVSLMKNNIKEIPSY-MSPHCDILSTLLLQANGNLWTI-PECFFVHMHGLKVLNLSHTDIEV-----LPSSVSDLTN 570 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~ 570 (897)
++++|++++|.+...... +...+++|++|++++|..+... ...++.++++|++|++++|.++. ++.....+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 455666665544322111 1113556666666655333221 12223455666666666655432 2222234556
Q ss_pred cceeeccccc-ccc--CCcc-hhccccCCEeeccCC-cCcccCccccCCCCCCEEeCCCCC-------------------
Q 043332 571 LRSLLLRYCL-RLR--RVPS-VAKLLALHYLDLEAT-RIEEVPEGMEMLENLSYLYLYSLP------------------- 626 (897)
Q Consensus 571 L~~L~L~~~~-~~~--~lp~-~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~------------------- 626 (897)
|++|++++|. .+. .++. +.++++|++|++++| .+..+|..+.++++|++|+++.+.
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~ 265 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC
Confidence 6666666553 010 1111 233456666666655 334444445555555555543321
Q ss_pred ------------CCcCCCCcccCCcccCeEecccCchhhhhcHHH-HHhhhcccceeEEEeccchhhhhhhhccCCCCce
Q 043332 627 ------------LKKFPTGILPRLRDLYKLKLSFGREALRETVEE-AARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSK 693 (897)
Q Consensus 627 ------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 693 (897)
...++ .++..+++|++|+++.+. .....+.. +..+++ |+.|++..+ +.............+|+
T Consensus 266 ~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~-L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 266 ELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK-LQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCCEEECCBTCCGGGGG-GGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT-CCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CcccccCCcccchhhHH-HHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC-cCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 11111 112345667777776332 33333332 345566 777777655 22111100011234566
Q ss_pred eeEEEec-------ccccc----cccccccccccceeeecccccCCCC-cc-cCccccceeEEe-----ccCCccccccc
Q 043332 694 NYCLLLS-------ASDMR----GILITDLEVDKSVSLMNCKICEREE-PI-VLPEDVQFLQMF-----EVSDVASLNDV 755 (897)
Q Consensus 694 ~l~~~~~-------~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~-~l-~~~~~L~~L~l~-----~~~~~~~~~~~ 755 (897)
.|.+... ...+. ..+...++.|+.+.+..+.+..... .+ ..+++|+.|.+. +|..++...
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-- 419 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-- 419 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC--
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc--
Confidence 6655320 00110 0111135566666554433321110 11 235677777776 333333110
Q ss_pred CcccCCccc-cccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEeccccchhhcccccchhhhhhhccccccccc
Q 043332 756 LPREQGLVN-IGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKVCFSIEEIVVVEDEETEKELATNTIINTVT 834 (897)
Q Consensus 756 ~~~~~~l~~-~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 834 (897)
...+++. +..++ +|++|++++ .+++.........+++|+.|++++|. ++.... .. -...
T Consensus 420 --~~~~~~~l~~~~~-~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~------~~--------l~~~ 479 (594)
T 2p1m_B 420 --LDIGFGAIVEHCK-DLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM------HH--------VLSG 479 (594)
T ss_dssp --THHHHHHHHHHCT-TCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH------HH--------HHHH
T ss_pred --hhhHHHHHHhhCC-CccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHH------HH--------HHhc
Confidence 0001111 33445 677777644 33332122222236667777777663 221100 00 0013
Q ss_pred cCccceeecccCcccccccCCCCcccCCCccEEEecCCCC
Q 043332 835 LPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPK 874 (897)
Q Consensus 835 fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~ 874 (897)
+|+|+.|+|++|+. +..........+|+|++|++++|+.
T Consensus 480 ~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 67777777777764 3221111223356777777777754
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.5e-16 Score=170.65 Aligned_cols=240 Identities=17% Similarity=0.134 Sum_probs=174.1
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcc--cCChhHh------hCCCCccEEEecCCCCC-cCCccc--
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLW--TIPECFF------VHMHGLKVLNLSHTDIE-VLPSSV-- 565 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~------~~l~~Lr~L~L~~~~i~-~lp~~i-- 565 (897)
.+++.+++++|.+ .+|.... ..|+.|++++| .+. .+|..++ .++++|++|++++|.++ .+|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~---~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT---DIIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH---HHHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc-ccHHHHH---HHHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4577788888888 6665433 23888888887 342 3554431 26899999999999998 688876
Q ss_pred ccCcccceeeccccccccCCc-chhcc-----ccCCEeeccCCcCcccC-ccccCCCCCCEEeCCCCCCCc---CCCC-c
Q 043332 566 SDLTNLRSLLLRYCLRLRRVP-SVAKL-----LALHYLDLEATRIEEVP-EGMEMLENLSYLYLYSLPLKK---FPTG-I 634 (897)
Q Consensus 566 ~~l~~L~~L~L~~~~~~~~lp-~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~---~~~~-~ 634 (897)
+.+++|++|++++|. ++..| .++.+ ++|++|++++|.+..+| ..++++++|++|++++|.+.. ++.. .
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 899999999999985 55557 67777 89999999999999877 679999999999999998653 2222 2
Q ss_pred ccCCcccCeEecccCchhhh--hcH-HHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccc
Q 043332 635 LPRLRDLYKLKLSFGREALR--ETV-EEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITD 711 (897)
Q Consensus 635 l~~l~~L~~L~l~~~~~~~~--~~~-~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 711 (897)
++++++|++|+++ .+.... ... ..+..+++ |+.|+++.|.+...... .....
T Consensus 197 ~~~l~~L~~L~L~-~N~l~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~-----------------------~~~~~ 251 (312)
T 1wwl_A 197 PLKFPTLQVLALR-NAGMETPSGVCSALAAARVQ-LQGLDLSHNSLRDAAGA-----------------------PSCDW 251 (312)
T ss_dssp TTSCTTCCEEECT-TSCCCCHHHHHHHHHHTTCC-CSEEECTTSCCCSSCCC-----------------------SCCCC
T ss_pred hccCCCCCEEECC-CCcCcchHHHHHHHHhcCCC-CCEEECCCCcCCcccch-----------------------hhhhh
Confidence 3789999999998 333331 112 33456678 99999998876542200 00013
Q ss_pred cccccceeeecccccCCCCcccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCC
Q 043332 712 LEVDKSVSLMNCKICEREEPIVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCP 781 (897)
Q Consensus 712 ~~~l~~l~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~ 781 (897)
++.++.+++++|.+......+. ++|+.|+++++. ...+|.+..++ +|+.|++++++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-----------l~~~p~~~~l~-~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-----------LDRNPSPDELP-QVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-----------CCSCCCTTTSC-EEEEEECTTCT
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-----------CCCChhHhhCC-CCCEEeccCCC
Confidence 4668888999888863333233 899999999885 33445577888 99999999975
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=3.3e-16 Score=178.50 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=133.0
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 575 (897)
.++++.|++++|.+..+++..+..+++|++|++++| .+...++ |..+++|++|+|++|.++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 348999999999999998877889999999999999 5655554 6899999999999999987764 38999999
Q ss_pred ccccccccCCcchhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcc-cCCcccCeEecccCchhh
Q 043332 576 LRYCLRLRRVPSVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGIL-PRLRDLYKLKLSFGREAL 653 (897)
Q Consensus 576 L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 653 (897)
+++|. +..++. ..+++|++|++++|.+..+ |..++++++|++|++++|.+...++..+ +.+++|++|+++. +...
T Consensus 106 L~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~-N~l~ 182 (487)
T 3oja_A 106 AANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIY 182 (487)
T ss_dssp CCSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCC
T ss_pred CcCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC-Cccc
Confidence 99984 444442 2468899999999999876 5578999999999999999887655444 4799999999983 3322
Q ss_pred hhcHHHHHhhhcccceeEEEeccchh
Q 043332 654 RETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
.. .....+++ |+.|+++.|.+..
T Consensus 183 ~~--~~~~~l~~-L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 183 DV--KGQVVFAK-LKTLDLSSNKLAF 205 (487)
T ss_dssp EE--ECCCCCTT-CCEEECCSSCCCE
T ss_pred cc--cccccCCC-CCEEECCCCCCCC
Confidence 21 12224566 7777777665543
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.1e-15 Score=157.25 Aligned_cols=136 Identities=22% Similarity=0.302 Sum_probs=116.9
Q ss_pred ccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCC-CCcCCc-ccccCcccceeecccccccc
Q 043332 506 KNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTD-IEVLPS-SVSDLTNLRSLLLRYCLRLR 583 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~~~~~~ 583 (897)
.+.+..+|. . .++|+.|++++| .+..++...|.++++|++|++++|. ++.+|. .+..+++|++|++++|+.++
T Consensus 20 c~~l~~ip~-~---~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 20 CKDIQRIPS-L---PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp ECSCSSCCC-C---CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred ccCccccCC-C---CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 334777776 2 248999999998 7888888778999999999999997 988875 68899999999999855677
Q ss_pred CCc--chhccccCCEeeccCCcCcccCccccCCCCCC---EEeCCCC-CCCcCCCCcccCCcccC-eEecc
Q 043332 584 RVP--SVAKLLALHYLDLEATRIEEVPEGMEMLENLS---YLYLYSL-PLKKFPTGILPRLRDLY-KLKLS 647 (897)
Q Consensus 584 ~lp--~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~ 647 (897)
.+| .+.++++|++|++++|.++.+|. ++.+.+|+ +|++++| .+..+|+..++++++|+ +|+++
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 776 48899999999999999999987 88888888 9999999 89999988788999999 99987
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1e-14 Score=154.52 Aligned_cols=170 Identities=23% Similarity=0.285 Sum_probs=146.6
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 575 (897)
..+++.|++++|.+..++. +..+++|++|++++| .+..++. +.++++|++|++++|.++.+|. +..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 4679999999999998864 568999999999999 6777776 6899999999999999998765 89999999999
Q ss_pred ccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 576 LRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 576 L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
+++| .++.++.+..+++|++|++++|.++.+ ..++.+++|++|++++|.+..+++ +..+++|++|+++ ++....
T Consensus 119 L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~-~N~i~~- 192 (291)
T 1h6t_A 119 LEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS-KNHISD- 192 (291)
T ss_dssp CTTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCB-
T ss_pred CCCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC-CCcCCC-
Confidence 9998 567778899999999999999999988 678999999999999999998876 6899999999998 333332
Q ss_pred cHHHHHhhhcccceeEEEeccchh
Q 043332 656 TVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
+..+..+++ |+.|+++.|.+..
T Consensus 193 -l~~l~~l~~-L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LRALAGLKN-LDVLELFSQECLN 214 (291)
T ss_dssp -CGGGTTCTT-CSEEEEEEEEEEC
T ss_pred -ChhhccCCC-CCEEECcCCcccC
Confidence 234788888 9999999887654
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=7.8e-14 Score=152.38 Aligned_cols=292 Identities=13% Similarity=0.157 Sum_probs=170.4
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC------CHHHH
Q 043332 137 TTATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL------DLIKL 210 (897)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~------~~~~~ 210 (897)
....++|| ++++++|.+++... +++.|+|++|+|||||++++++.. + .+|+++.... +...+
T Consensus 10 ~~~~~~gR--~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDR--EEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSC--HHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCCh--HHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHH
Confidence 34579999 78888888888653 799999999999999999999863 1 6777765432 55666
Q ss_pred HHHHHHHHcC-----------------CCCC-ChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc---------cccccc
Q 043332 211 QNEIAAALNQ-----------------SLPE-NEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR---------LEEVGI 263 (897)
Q Consensus 211 ~~~i~~~l~~-----------------~~~~-~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~---------~~~~~~ 263 (897)
...+...+.. .... ..+.......+.......++++||+||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666665432 0000 011222223332222222389999999976432 111111
Q ss_pred CCCCCCCCcEEEEEeCCchh-hc----------cc-ccc-eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHH
Q 043332 264 PEPSEENGCKLVITTRSLGV-CR----------FM-DCK-EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVE 330 (897)
Q Consensus 264 ~~~~~~~gs~iivTTR~~~v-~~----------~~-~~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~ 330 (897)
.. +...+.++|+|++...+ .. .. ... .+.+.+|+.+|+.+++...+..... ....+.+..|++
T Consensus 158 ~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~~ 233 (350)
T 2qen_A 158 AY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAVE 233 (350)
T ss_dssp HH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHH
T ss_pred HH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHH
Confidence 11 11246789999887543 11 01 112 3899999999999999875432211 112456788999
Q ss_pred HhCCChHHHHHHHhhhcCCCChhHHH-HHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcCCCCcccC
Q 043332 331 ECAGLPLAIVTVASCMRGVDEIHEWR-NALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIP 409 (897)
Q Consensus 331 ~c~G~Plal~~~~~~L~~~~~~~~w~-~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~ 409 (897)
.|+|+|+++..++..+....+...+. .+.+..... ....+.. +.+ + + +..+..+..+|. + .++
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~---l~~-~-~-~~~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL------IMGELEE---LRR-R-S-PRYVDILRAIAL---G-YNR 297 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHH---HHH-H-C-HHHHHHHHHHHT---T-CCS
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH------HHHHHHH---HHh-C-C-hhHHHHHHHHHh---C-CCC
Confidence 99999999999887643211222111 111111000 0011111 112 2 5 678888888887 2 134
Q ss_pred HHHHHHHHHHhCcchhhhhhhhHHhHHHHHHHHHHHccccccccCCCeEE-ehHHHHHHHH
Q 043332 410 KEELIDYWIAEGFIEEVKDVQAKNDRGHTILNRLVNCCLLESAKDGRCVK-MHDLIRDMAL 469 (897)
Q Consensus 410 ~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~d~a~ 469 (897)
...+.....+.. - .........+++.|.+.+++.... ..|. .|++++++.+
T Consensus 298 ~~~l~~~~~~~~-~------~~~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG-T------KIPEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT-C------CCCHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh-C------CCCHHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 444443322110 0 011245678999999999998652 3455 4778887654
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=5.7e-15 Score=161.13 Aligned_cols=234 Identities=17% Similarity=0.144 Sum_probs=124.8
Q ss_pred EEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCC-cCCc-ccccCcccceeeccc
Q 043332 501 RVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIE-VLPS-SVSDLTNLRSLLLRY 578 (897)
Q Consensus 501 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~-~i~~l~~L~~L~L~~ 578 (897)
.++-++++++.+|..+. ++++.|++++| .+..+|...|.++++|++|+|++|.+. .+|. .+.++++|+.+...+
T Consensus 13 ~v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLP---RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCCSCCTTCC---TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCCccCcCcC---CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34455556666665432 45566666665 555666555566666666666666643 3433 345555555433333
Q ss_pred cccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCC-CCCCcCCCCcccCCc-ccCeEecccCchhh
Q 043332 579 CLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYS-LPLKKFPTGILPRLR-DLYKLKLSFGREAL 653 (897)
Q Consensus 579 ~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~ 653 (897)
++.++.+| .+..+++|++|++++|.+..+|.. +....++..|++.+ +.+..++...+..+. .|++|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L--------- 159 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL--------- 159 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE---------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh---------
Confidence 33444443 355566666666666655555432 33334455555543 234555444333332 24444
Q ss_pred hhcHHHHHhhhcccceeEEEeccchhhhhhhhccCCCCceeeEEEecccccccccccccccccceeeecccccCCCCc--
Q 043332 654 RETVEEAARLSNRLDTFEGHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDMRGILITDLEVDKSVSLMNCKICEREEP-- 731 (897)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-- 731 (897)
+++.|.++.++.... ....+..+.+.++...+.++.
T Consensus 160 -----------------~L~~N~i~~i~~~~f-------------------------~~~~L~~l~l~~~n~l~~i~~~~ 197 (350)
T 4ay9_X 160 -----------------WLNKNGIQEIHNSAF-------------------------NGTQLDELNLSDNNNLEELPNDV 197 (350)
T ss_dssp -----------------ECCSSCCCEECTTSS-------------------------TTEEEEEEECTTCTTCCCCCTTT
T ss_pred -----------------ccccccccCCChhhc-------------------------cccchhHHhhccCCcccCCCHHH
Confidence 444443332211110 112233344443332222322
Q ss_pred ccCccccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEec
Q 043332 732 IVLPEDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVKV 805 (897)
Q Consensus 732 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~ 805 (897)
+..+++|+.|+++++. ...+|. +.|. +|++|.+.+|.+++.+|+ +.+|++|+.+++.+
T Consensus 198 f~~l~~L~~LdLs~N~-----------l~~lp~-~~~~-~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 FHGASGPVILDISRTR-----------IHSLPS-YGLE-NLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TTTEECCSEEECTTSC-----------CCCCCS-SSCT-TCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred hccCcccchhhcCCCC-----------cCccCh-hhhc-cchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 5677888999888875 233443 3466 889999999988888875 45677888888865
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=7.6e-16 Score=181.52 Aligned_cols=327 Identities=14% Similarity=0.056 Sum_probs=161.2
Q ss_pred CCCCccEEEccCCCCccc-CChhHhhCCCCccEEEecCC-CCCc--CCcccccCcccceeeccccccccC-----Ccc-h
Q 043332 519 HCDILSTLLLQANGNLWT-IPECFFVHMHGLKVLNLSHT-DIEV--LPSSVSDLTNLRSLLLRYCLRLRR-----VPS-V 588 (897)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~Lr~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~~~~-----lp~-~ 588 (897)
.+++|+.|++++|. +.. .+..+...+++|++|++++| .++. ++..+.++++|++|++++|. ++. ++. .
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 45677777777763 322 22222235677777777776 3442 44444467777777777765 222 221 2
Q ss_pred hccccCCEeeccCCc--Cc--ccCccccCCCCCCEEeCCCCC-CCcCCCCcccCCcccCeEecccCc-----hhhhhcHH
Q 043332 589 AKLLALHYLDLEATR--IE--EVPEGMEMLENLSYLYLYSLP-LKKFPTGILPRLRDLYKLKLSFGR-----EALRETVE 658 (897)
Q Consensus 589 ~~l~~L~~L~l~~~~--l~--~lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-----~~~~~~~~ 658 (897)
..+++|++|++++|. +. .++.-+.++++|++|++++|. +..++. .+.++++|++|++..+. +.......
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHH
Confidence 355677777777664 21 122223445777777777662 333332 24566677777654211 11111223
Q ss_pred HHHhhhcccceeE-EEeccchhhhhhhhccCCCCceeeEEEeccccc--ccccccccccccceeeecccccCCCCc-ccC
Q 043332 659 EAARLSNRLDTFE-GHFSTLKDFNIYVKSTDGRGSKNYCLLLSASDM--RGILITDLEVDKSVSLMNCKICEREEP-IVL 734 (897)
Q Consensus 659 ~l~~l~~~L~~L~-l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~~-l~~ 734 (897)
.+..+++ |+.|. +.......++.... ...+|+.|.+....... ...+...++.|+.|.+.+|........ ...
T Consensus 260 ~l~~~~~-L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~ 336 (594)
T 2p1m_B 260 ALSGCKE-LRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336 (594)
T ss_dssp HHHTCTT-CCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHhcCCC-cccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHh
Confidence 4555666 66662 22111111111111 22355555554332110 111112556677777766621111111 223
Q ss_pred ccccceeEEeccC--------CcccccccCcccCCcccc-ccccccccEEEEecCCCCCCCChhhhhhccCCccEEEEe-
Q 043332 735 PEDVQFLQMFEVS--------DVASLNDVLPREQGLVNI-GKFSHDLKVLSFVRCPNLKNLFSLQLLPALQNLEVLEVK- 804 (897)
Q Consensus 735 ~~~L~~L~l~~~~--------~~~~~~~~~~~~~~l~~~-~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~- 804 (897)
+++|+.|.+.+|. .+.. ..+..+ ..++ +|++|.+ .|+.+++........++++|+.|+++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~--------~~l~~l~~~~~-~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTE--------QGLVSVSMGCP-KLESVLY-FCRQMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCH--------HHHHHHHHHCT-TCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred CCCCCEEEEecCcccccccCCCCCH--------HHHHHHHHhch-hHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeec
Confidence 5667777774431 1111 111112 2356 8888844 45556553333333467888888888
Q ss_pred ----ccccchhhcccccchhhhhhhccccccccccCccceeecccCcccccccCCCCcccCCCccEEEecCCC
Q 043332 805 ----VCFSIEEIVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCP 873 (897)
Q Consensus 805 ----~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~ 873 (897)
+|+.++...... +... -...+|+|+.|+|.+ +++......-...+++|++|++++|.
T Consensus 407 ~~~~~~~~l~~~~~~~--~~~~--------l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDI--GFGA--------IVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp SSTTCCCTTTCCCTHH--HHHH--------HHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred ccCCCcccccCCchhh--HHHH--------HHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 566665332110 0000 012478888888866 44332110011137889999999885
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=1.1e-13 Score=155.00 Aligned_cols=296 Identities=13% Similarity=0.069 Sum_probs=172.9
Q ss_pred ccccchhhHHHHHHHHHHh-c----C--CCeeEEEE--EcCCCchHHHHHHHHHHHHhhcc--CCC-cEEEEEEeCCCCC
Q 043332 139 ATLAGEKTKKVVERIWEDL-M----G--DKVTKIGV--WGMGGIGKTTIMKEINNRLQKET--NKF-NVVIWVTVSQPLD 206 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~vs~~~~ 206 (897)
..++|| +++++++.+++ . + ...+.+.| +|++|+||||||+.+++...... ..+ ..++|+.+....+
T Consensus 22 ~~l~gR--~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVR--RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSS--CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCh--HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 579999 66777777776 3 2 24456666 99999999999999998863210 112 2367888767778
Q ss_pred HHHHHHHHHHHHcCCCCC-ChhHHHHHHHHHHHHh-ccCeEEEEEcCCCccc--------cccccccC---CCCCC--CC
Q 043332 207 LIKLQNEIAAALNQSLPE-NEDEVRRAGRLSGMLK-AKAKFVLILDDMWKEF--------RLEEVGIP---EPSEE--NG 271 (897)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~--------~~~~~~~~---~~~~~--~g 271 (897)
...+...|+.+++..... ..+.......+...+. .+++++||+||+|... .+..+... .+..+ .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999999765332 1122333444444443 3679999999998632 12222111 11012 34
Q ss_pred cEEEEEeCCchhhc-----------ccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhC------C
Q 043332 272 CKLVITTRSLGVCR-----------FMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECA------G 334 (897)
Q Consensus 272 s~iivTTR~~~v~~-----------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------G 334 (897)
..||+||+..++.. .... .+.+.+++.++++++|...+..... ......+.+..|++.|+ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~-~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGF-KLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCC-eeeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCC
Confidence 45888887654321 1111 2899999999999999876532111 01122467788999999 9
Q ss_pred ChHHHHHHHhh-hc----CCC---ChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcCC--C
Q 043332 335 LPLAIVTVASC-MR----GVD---EIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYP--E 404 (897)
Q Consensus 335 ~Plal~~~~~~-L~----~~~---~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp--~ 404 (897)
.|..+..+... .. ... +...+..++.... . ...+.-++..|| .+.+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~--~~~~~~~l~~l~-~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----------A--ASIQTHELEALS-IHELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC-HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----------c--cchHHHHHHcCC-HHHHHHHHHHHHHHhcC
Confidence 99765554432 11 111 1222332222110 0 233455778898 78888888888653 2
Q ss_pred CcccCHHHHHHHHHHhCcchhhhhhhhHHhHHHHHHHHHHHccccccc
Q 043332 405 DFAIPKEELIDYWIAEGFIEEVKDVQAKNDRGHTILNRLVNCCLLESA 452 (897)
Q Consensus 405 ~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 452 (897)
+..++...+...|..... ...............++++|...+++...
T Consensus 325 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASL-TMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CSSBCHHHHHHHHHHHHH-HHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 334556665554421100 00000001124466789999999999775
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.3e-14 Score=158.22 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=150.0
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccE-EEecCCCCCc
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKV-LNLSHTDIEV 560 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~-L~L~~~~i~~ 560 (897)
.+..+.++|.. .+.++++|++++|.++.+|...|.++++|++|++++|.....+|...|.++++|.. +.+.+|.++.
T Consensus 17 ~~~~Lt~iP~~--l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 17 QESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp ESTTCCSCCTT--CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred cCCCCCccCcC--cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 44567788865 45789999999999999999889999999999999995557788888899988765 6777788998
Q ss_pred CC-cccccCcccceeeccccccccCCc--chhccccCCEeeccCC-cCcccCcc-ccCC-CCCCEEeCCCCCCCcCCCCc
Q 043332 561 LP-SSVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEAT-RIEEVPEG-MEML-ENLSYLYLYSLPLKKFPTGI 634 (897)
Q Consensus 561 lp-~~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~-~l~~lp~~-~~~l-~~L~~L~l~~~~~~~~~~~~ 634 (897)
+| ..+..+++|++|++++| .++.+| .+....++.+|++.++ .+..+|.. +..+ ..|+.|++++|.++.++.+.
T Consensus 95 l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred cCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 74 56889999999999997 566666 4667778889999775 78888764 5555 46899999999999999886
Q ss_pred ccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchh
Q 043332 635 LPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 635 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
+ ..++|++|.+..++.........+..+++ |+.|+++.|.++.
T Consensus 174 f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~-L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 174 F-NGTQLDELNLSDNNNLEELPNDVFHGASG-PVILDISRTRIHS 216 (350)
T ss_dssp S-TTEEEEEEECTTCTTCCCCCTTTTTTEEC-CSEEECTTSCCCC
T ss_pred c-cccchhHHhhccCCcccCCCHHHhccCcc-cchhhcCCCCcCc
Confidence 4 56789999887333333333344567777 8888877766544
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=5.8e-14 Score=142.94 Aligned_cols=144 Identities=26% Similarity=0.343 Sum_probs=127.2
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCcccceeecc
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLRSLLLR 577 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 577 (897)
.+.++.+++.+..+|.... ++|++|++++| .+..++...|.++++|++|+|++|.++.+|.. +..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4568888888999887543 78999999999 67778777789999999999999999988755 5889999999999
Q ss_pred ccccccCCc--chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 578 YCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 578 ~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+| .++.+| .+..+++|++|++++|.++.+|..+..+.+|++|++++|.+..++...+..+++|++|+++
T Consensus 97 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 97 TN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CC-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 98 566666 3789999999999999999999999999999999999999999998888999999999998
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=6.3e-14 Score=146.98 Aligned_cols=150 Identities=31% Similarity=0.482 Sum_probs=134.0
Q ss_pred hccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCcccc
Q 043332 494 EWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLR 572 (897)
Q Consensus 494 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~ 572 (897)
...+++++|++++|.+..++ .+..+++|++|++++| .+..++...|.++++|++|++++|.++.+|.. ++.+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34578999999999998875 4578999999999999 78888888889999999999999999987765 78999999
Q ss_pred eeeccccccccCCc-c-hhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 573 SLLLRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 573 ~L~L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+|++++| .++.+| . ++++++|++|++++|.++.+|.. ++.+++|++|++++|.+..+++..++.+++|++|+++
T Consensus 137 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 137 YLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 9999998 566666 3 79999999999999999988765 6899999999999999999998888999999999998
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=8.1e-15 Score=159.24 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=64.0
Q ss_pred CCccEEEecCCCCCcCCcccccCcccceeeccccccccC-Cc-chhccccCCEeeccCCcCc-ccCccccCCCCCCEEeC
Q 043332 546 HGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRR-VP-SVAKLLALHYLDLEATRIE-EVPEGMEMLENLSYLYL 622 (897)
Q Consensus 546 ~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-lp-~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l 622 (897)
+.+++|++++|.+...+..+..+++|++|++++|..... +| .+..+++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455555555555554444455555666666665532212 34 3555556666666655554 34445555566666666
Q ss_pred CCC-CCCc--CCCCcccCCcccCeEecccCchhhhhc-HHHHHhhh-cccceeEEEec
Q 043332 623 YSL-PLKK--FPTGILPRLRDLYKLKLSFGREALRET-VEEAARLS-NRLDTFEGHFS 675 (897)
Q Consensus 623 ~~~-~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~-~~L~~L~l~~~ 675 (897)
++| .++. ++ ..++++++|++|+++.+....... ...+..++ + |+.|+++.|
T Consensus 150 ~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~-L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET-ITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT-CCEEECCSC
T ss_pred CCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC-CCEEEeCCC
Confidence 655 3432 22 123455555666555221322221 23345555 5 666665554
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=3.7e-15 Score=161.92 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=101.3
Q ss_pred CCccEEEecCCCCCcCCcccccC--cccceeeccccccccCCcchhccccCCEeeccCCcCcc--cCccccCCCCCCEEe
Q 043332 546 HGLKVLNLSHTDIEVLPSSVSDL--TNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEE--VPEGMEMLENLSYLY 621 (897)
Q Consensus 546 ~~Lr~L~L~~~~i~~lp~~i~~l--~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~ 621 (897)
..++.++++++.+. |..+..+ .++++|++++|......+.+.++++|++|++++|.+.. +|..+.++++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34788888888776 4556677 89999999998654455577889999999999998863 788899999999999
Q ss_pred CCCCCCCcCCCCcccCCcccCeEecccCchhhhhcH-HHHHhhhcccceeEEEec-cchh
Q 043332 622 LYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETV-EEAARLSNRLDTFEGHFS-TLKD 679 (897)
Q Consensus 622 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~~L~~L~l~~~-~l~~ 679 (897)
+++|.+....+..++++++|++|+++.+.......+ ..+..+++ |+.|+++.| .+..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~-L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDFTE 183 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT-CCEEECCCCTTCCH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC-CCEEcCCCCCCcCh
Confidence 999987754333468899999999994434444333 44778888 999999887 6543
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=5.3e-14 Score=142.24 Aligned_cols=143 Identities=27% Similarity=0.459 Sum_probs=124.8
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeeccc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 578 (897)
+.++.+++.+..+|.... ++|+.|++++| .+..++...|..+++|++|+|++|.++.+ |..+..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 567888888998887543 68999999998 78888887789999999999999999866 77899999999999999
Q ss_pred cccccCCc-c-hhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 579 CLRLRRVP-S-VAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 579 ~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
| .++.+| . +..+++|++|++++|.+..+ |..+..+++|++|++++|.++.++++.+..+++|++|+++
T Consensus 90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 90 N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred C-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 7 566777 3 78999999999999999887 4568999999999999999999998878999999999998
No 100
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=3.1e-13 Score=147.98 Aligned_cols=289 Identities=13% Similarity=0.116 Sum_probs=166.7
Q ss_pred cccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-----CCHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LDLIKLQN 212 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~ 212 (897)
...++|| +++++.|.+ +.. +++.|+|++|+|||||++++++... . ..+|+.+... .+...+..
T Consensus 12 ~~~~~gR--~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 12 RKDFFDR--EKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN---L---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp GGGSCCC--HHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT---C---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred HHHhcCh--HHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC---C---CEEEEEchhhccccCCCHHHHHH
Confidence 4579999 788999988 765 6999999999999999999998752 1 2578887642 34455555
Q ss_pred HHHHHHcC-------------CC-----CC---Chh----HHHHHHHHHHHHhc-c-CeEEEEEcCCCccc-----cccc
Q 043332 213 EIAAALNQ-------------SL-----PE---NED----EVRRAGRLSGMLKA-K-AKFVLILDDMWKEF-----RLEE 260 (897)
Q Consensus 213 ~i~~~l~~-------------~~-----~~---~~~----~~~~~~~l~~~l~~-~-~r~LlVlDdv~~~~-----~~~~ 260 (897)
.+...+.. .. .. ... .......+.+.+.+ . ++++||+||++... .+..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 55444321 00 00 000 00112233333322 1 48999999997632 1211
Q ss_pred cccCCCCCCCCcEEEEEeCCchhhc-----------cccc--ceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHH
Q 043332 261 VGIPEPSEENGCKLVITTRSLGVCR-----------FMDC--KEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINS 327 (897)
Q Consensus 261 ~~~~~~~~~~gs~iivTTR~~~v~~-----------~~~~--~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~ 327 (897)
+...+.+...+.++|+|+|...... ..+. ..+.+.+|+.+|+.+++...+..... .... ...
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~----~~~ 234 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD----YEV 234 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC----HHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc----HHH
Confidence 1111111124678999999764311 1111 23899999999999999876532111 1111 178
Q ss_pred HHHHhCCChHHHHHHHhhhcCCCChhHHHH-HHHHHhhccccCCCchhhhhhhhh-hhcc--CCCchhhHHHHHhhhcCC
Q 043332 328 VVEECAGLPLAIVTVASCMRGVDEIHEWRN-ALNELRGLVRSRNGVNADVLGRLE-FSYH--RLKDDKVQQCFLYCALYP 403 (897)
Q Consensus 328 i~~~c~G~Plal~~~~~~L~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~cfl~~~~fp 403 (897)
|++.|+|+|+++..++..+....+...|-. +.+... ..+...+. +.++ .|+ +..+..+..+|.
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~-~~~~~~l~~la~-- 301 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIAR-KRYLNIMRTLSK-- 301 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGH-HHHHHHHHHHTT--
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhcccccc-HHHHHHHHHHHc--
Confidence 999999999999999877643222223321 111110 11111111 1111 566 678888888887
Q ss_pred CCcccCHHHHHHHHH-HhCcchhhhhhhhHHhHHHHHHHHHHHccccccccCCCeEE-ehHHHHHHH
Q 043332 404 EDFAIPKEELIDYWI-AEGFIEEVKDVQAKNDRGHTILNRLVNCCLLESAKDGRCVK-MHDLIRDMA 468 (897)
Q Consensus 404 ~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~d~a 468 (897)
+. +...+....- ..|. .........+++.|.+.+++.... ..|+ -|++++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 21 3344332210 1121 011245678899999999998653 3455 578888764
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=9.7e-14 Score=140.29 Aligned_cols=144 Identities=22% Similarity=0.304 Sum_probs=124.2
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccC-ChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceeec
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTI-PECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLLL 576 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L 576 (897)
-+.+++++|.+..+|.... +.++.|++++| .+..+ +..+|..+++|++|+|++|.++.++. .+..+.+|++|+|
T Consensus 13 ~~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP---QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC---TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCccCCC---CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 4578999999999987543 46789999999 66666 45667899999999999999997765 6899999999999
Q ss_pred cccccccCCc--chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 577 RYCLRLRRVP--SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 577 ~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
++|. ++.++ .+..+++|++|++++|.+..+ |..+..+.+|++|++++|.++.+++..+..+++|++|+++
T Consensus 89 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 89 TSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 9985 45555 499999999999999999987 5679999999999999999999977778999999999998
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=7.4e-14 Score=138.63 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=124.5
Q ss_pred ccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc-CCcccccCcccce
Q 043332 495 WKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV-LPSSVSDLTNLRS 573 (897)
Q Consensus 495 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~ 573 (897)
...++++|++++|.+..++ .+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .|..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3467999999999999887 3578899999999999 666665 36889999999999999984 6888999999999
Q ss_pred eeccccccccCCc-chhccccCCEeeccCCc-CcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 574 LLLRYCLRLRRVP-SVAKLLALHYLDLEATR-IEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 574 L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
|++++|......| .++.+++|++|++++|. +..+| .+..+++|++|++++|.+..++ . +..+++|++|+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~-l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-G-IEDFPKLNQLYAF 189 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-T-GGGCSSCCEEEEC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-H-hccCCCCCEEEee
Confidence 9999986544456 69999999999999997 88887 7899999999999999998877 3 6889999999998
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=3.8e-14 Score=164.65 Aligned_cols=170 Identities=24% Similarity=0.287 Sum_probs=139.7
Q ss_pred cccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceee
Q 043332 496 KENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLL 575 (897)
Q Consensus 496 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 575 (897)
..+++.|++++|.+..++. +..+++|+.|+|++| .+..++. +..+++|++|+|++|.++.+| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 4578888999998888863 567899999999998 6777766 688999999999999998876 688999999999
Q ss_pred ccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhh
Q 043332 576 LRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 576 L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
|++| .+..++.+..+++|+.|+|++|.+..+ ..++.+++|++|++++|.+..+++ +..+++|+.|+++ ++....
T Consensus 116 Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls-~N~i~~- 189 (605)
T 1m9s_A 116 LEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS-KNHISD- 189 (605)
T ss_dssp CTTS-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC-SSCCCB-
T ss_pred ecCC-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc-CCCCCC-
Confidence 9997 566777889999999999999988887 678899999999999999888776 6889999999998 333322
Q ss_pred cHHHHHhhhcccceeEEEeccchh
Q 043332 656 TVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 656 ~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
+..+..+++ |+.|+++.|.+..
T Consensus 190 -l~~l~~l~~-L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 -LRALAGLKN-LDVLELFSQECLN 211 (605)
T ss_dssp -CGGGTTCTT-CSEEECCSEEEEC
T ss_pred -ChHHccCCC-CCEEEccCCcCcC
Confidence 245778888 9999998877654
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=4.7e-14 Score=154.50 Aligned_cols=172 Identities=24% Similarity=0.303 Sum_probs=88.1
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhh-CCCCccEEEecCCCCCcCC-cccccCcccceeecc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFV-HMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLLLR 577 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 577 (897)
+.++.+++.+..+|.... +.++.|++++| .+..++...|. ++++|++|+|++|.|+.++ ..+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 345555555555554332 33555566555 45555554444 5555666666665555444 235555566666665
Q ss_pred ccccccCCc--chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCCcCCCCcc---cCCcccCeEecccCch
Q 043332 578 YCLRLRRVP--SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLKKFPTGIL---PRLRDLYKLKLSFGRE 651 (897)
Q Consensus 578 ~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~ 651 (897)
+|. ++.++ .+..+.+|++|++++|.+..+ |..+..+.+|++|++++|.+..+|...+ ..+++|++|+++ ++.
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~-~N~ 174 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS-SNK 174 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC-SSC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC-CCC
Confidence 553 33333 255556666666666655544 3345555666666666665555555444 345556666655 333
Q ss_pred hhhhcHHHHHhhhc-ccceeEEEeccc
Q 043332 652 ALRETVEEAARLSN-RLDTFEGHFSTL 677 (897)
Q Consensus 652 ~~~~~~~~l~~l~~-~L~~L~l~~~~l 677 (897)
........+..++. .++.|+++.|.+
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCc
Confidence 33333344444443 024555555443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.9e-13 Score=139.08 Aligned_cols=142 Identities=26% Similarity=0.439 Sum_probs=125.9
Q ss_pred CCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC
Q 043332 483 GLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP 562 (897)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 562 (897)
+..+..+|.. .+.+++.|++++|.+..+++..+..+++|+.|++++| .+..++...|.++++|++|+|++|.++.+|
T Consensus 28 ~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 28 SKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp TSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 4456677764 4578999999999999998888889999999999999 788899888899999999999999999887
Q ss_pred cc-cccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCC
Q 043332 563 SS-VSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLK 628 (897)
Q Consensus 563 ~~-i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~ 628 (897)
.. +..+++|++|+|++| .++.+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+.
T Consensus 105 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 65 688999999999998 567888 799999999999999999998854 889999999999998754
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=5.6e-14 Score=140.93 Aligned_cols=142 Identities=28% Similarity=0.443 Sum_probs=85.7
Q ss_pred EEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCcccceeecccc
Q 043332 501 RVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLRSLLLRYC 579 (897)
Q Consensus 501 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 579 (897)
.++..++.+..+|... .++|+.|++++| .+..++...|..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI---PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC---CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4455555555555432 245666666666 45555555556666666666666666655543 456666666666665
Q ss_pred ccccCCc-c-hhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 580 LRLRRVP-S-VAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 580 ~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
.++.+| . +.++++|++|++++|.+..+|.. +..+++|++|++++|.+..++...+..+++|++|+++
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 87 -QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 344444 2 56666666666666666665544 5666666666666666666666555666666666666
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=9.1e-14 Score=152.22 Aligned_cols=163 Identities=28% Similarity=0.304 Sum_probs=139.3
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCC-CCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSP-HCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV 560 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~ 560 (897)
.+..+..+|.. .+..++.|++++|.+..++...+. .+++|+.|++++| .+..++...|.++++|++|+|++|.++.
T Consensus 26 ~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 26 SKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp CSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCc
Confidence 34556777764 456789999999999999988877 8999999999999 7888888778999999999999999998
Q ss_pred CCc-ccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccc----cCCCCCCEEeCCCCCCCcCCCCc
Q 043332 561 LPS-SVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGM----EMLENLSYLYLYSLPLKKFPTGI 634 (897)
Q Consensus 561 lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~ 634 (897)
+|. .+..+.+|++|+|++|......| .+.++++|++|++++|.++.+|..+ ..+++|++|++++|.+..+|...
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 865 57899999999999985444445 6999999999999999999999875 67999999999999999998766
Q ss_pred ccCCcc--cCeEecc
Q 043332 635 LPRLRD--LYKLKLS 647 (897)
Q Consensus 635 l~~l~~--L~~L~l~ 647 (897)
+..++. |+.|++.
T Consensus 183 ~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 183 LQKLPAWVKNGLYLH 197 (361)
T ss_dssp HHHSCHHHHTTEECC
T ss_pred hhhccHhhcceEEec
Confidence 777776 4888888
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.1e-13 Score=137.73 Aligned_cols=144 Identities=24% Similarity=0.292 Sum_probs=124.1
Q ss_pred cCCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 482 AGLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 482 ~~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
.+..+..+|.. .+.+++.|++++|.+..++...+..+++|+.|++++| .+..+++..|.++++|++|+|++|.++.+
T Consensus 19 ~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 19 RGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 34556777764 3478999999999999999888899999999999999 77778667789999999999999999999
Q ss_pred Ccc-cccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCC
Q 043332 562 PSS-VSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLK 628 (897)
Q Consensus 562 p~~-i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~ 628 (897)
|.. +..+++|++|+|++|......| .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 876 5789999999999985443444 699999999999999999988765 889999999999998753
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=3.4e-14 Score=147.95 Aligned_cols=164 Identities=22% Similarity=0.265 Sum_probs=83.6
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccc
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 578 (897)
+..+++.++.+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|.++.+|. +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 334444445444443 1234555555555555 4444441 3555555555555555555544 55555555555555
Q ss_pred cccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHH
Q 043332 579 CLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVE 658 (897)
Q Consensus 579 ~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
| .++.+|.+.. .+|++|++++|.++.+| .++++++|++|++++|.++.++. ++.+++|++|+++ ++..... .
T Consensus 95 N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~-~N~i~~~--~ 166 (263)
T 1xeu_A 95 N-RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLH-GNEITNT--G 166 (263)
T ss_dssp S-CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECT-TSCCCBC--T
T ss_pred C-ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--HccCCCCCEEECC-CCcCcch--H
Confidence 4 3444443333 55555555555555543 35555555555555555555541 4555555555555 2222211 3
Q ss_pred HHHhhhcccceeEEEeccc
Q 043332 659 EAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 659 ~l~~l~~~L~~L~l~~~~l 677 (897)
.+..+++ |+.|+++.|.+
T Consensus 167 ~l~~l~~-L~~L~l~~N~~ 184 (263)
T 1xeu_A 167 GLTRLKK-VNWIDLTGQKC 184 (263)
T ss_dssp TSTTCCC-CCEEEEEEEEE
T ss_pred HhccCCC-CCEEeCCCCcc
Confidence 3445555 66666655544
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=6.9e-13 Score=132.96 Aligned_cols=154 Identities=26% Similarity=0.404 Sum_probs=126.0
Q ss_pred CCCcCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC
Q 043332 483 GLRLQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP 562 (897)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp 562 (897)
+..+..+|.. ...++++|++++|.+..++...+..+++|++|++++| .+..++...|..+++|++|++++|.++.+|
T Consensus 16 ~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 16 SQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp SSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 3345566644 3568999999999999998888889999999999998 778888888889999999999999999887
Q ss_pred cc-cccCcccceeeccccccccCCc-c-hhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCC
Q 043332 563 SS-VSDLTNLRSLLLRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRL 638 (897)
Q Consensus 563 ~~-i~~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (897)
.. +..+++|++|++++| .++.+| . +.++++|++|++++|.++.+|.. +..+++|++|++++|.+. +.+
T Consensus 93 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~ 164 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTC 164 (208)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCT
T ss_pred HhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCC
Confidence 65 688999999999997 456666 3 78999999999999999988776 788999999999998543 344
Q ss_pred cccCeEecc
Q 043332 639 RDLYKLKLS 647 (897)
Q Consensus 639 ~~L~~L~l~ 647 (897)
++|+.|+++
T Consensus 165 ~~l~~L~~~ 173 (208)
T 2o6s_A 165 PGIRYLSEW 173 (208)
T ss_dssp TTTHHHHHH
T ss_pred CCHHHHHHH
Confidence 556666554
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=5.7e-13 Score=138.60 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=126.9
Q ss_pred ccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCccccee
Q 043332 495 WKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSL 574 (897)
Q Consensus 495 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 574 (897)
...+++.|++++|.+..++ .+..+++|+.|++++| .+..++. +.++++|++|++++|.++.+|.... .+|++|
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 4568999999999999887 3568999999999999 7888877 7899999999999999999886444 999999
Q ss_pred eccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 575 LLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 575 ~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
++++| .++.++.+.++++|++|++++|.++.+| .++.+++|++|++++|.+..+ ..+..+++|+.|+++
T Consensus 112 ~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 112 FLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp ECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred EccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 99998 6777888999999999999999999986 789999999999999999888 337899999999998
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=6.8e-13 Score=140.36 Aligned_cols=145 Identities=24% Similarity=0.371 Sum_probs=130.0
Q ss_pred hhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccc
Q 043332 493 QEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLR 572 (897)
Q Consensus 493 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~ 572 (897)
.....+++.|++++|.+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|.++.++ .+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCcCCCCh-hhcCCCCCC
Confidence 3445789999999999999876 678999999999999 6777665 689999999999999999874 689999999
Q ss_pred eeeccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 573 SLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 573 ~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+|++++| .++.++.++.+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|+++
T Consensus 138 ~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 138 SLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 208 (291)
T ss_dssp EEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEE
T ss_pred EEEccCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECc
Confidence 9999998 56777889999999999999999998876 9999999999999999999864 6899999999998
No 113
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=6.5e-14 Score=149.99 Aligned_cols=176 Identities=21% Similarity=0.127 Sum_probs=129.4
Q ss_pred ccccEEEccccccccCCCCCC--CCCCCccEEEccCCCCccc-CC---hhHhhCCCCccEEEecCCCCCcCC-cccccCc
Q 043332 497 ENLERVSLMKNNIKEIPSYMS--PHCDILSTLLLQANGNLWT-IP---ECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLT 569 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~-~~---~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~ 569 (897)
.++++|++++|.+....+..+ ..+++|++|++++|. +.. .+ ...+..+++|++|++++|.+..+| ..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 458999999999886655444 788999999999994 433 22 233457899999999999998665 5788999
Q ss_pred ccceeeccccccccC--Cc---chhccccCCEeeccCCcCcccCcc----ccCCCCCCEEeCCCCCCCcC-CCCcccCC-
Q 043332 570 NLRSLLLRYCLRLRR--VP---SVAKLLALHYLDLEATRIEEVPEG----MEMLENLSYLYLYSLPLKKF-PTGILPRL- 638 (897)
Q Consensus 570 ~L~~L~L~~~~~~~~--lp---~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~-~~~~l~~l- 638 (897)
+|++|+|++|..... ++ .+..+++|++|++++|.++.+|.. ++.+++|++|++++|.+... |.. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 999999999864432 32 247889999999999999877653 57889999999999998887 544 4555
Q ss_pred --cccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccchh
Q 043332 639 --RDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 639 --~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
++|++|+++ ++... ..+..+ .++ |+.|+++.|.+..
T Consensus 249 ~~~~L~~L~Ls-~N~l~-~lp~~~--~~~-L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 249 WSSALNSLNLS-FAGLE-QVPKGL--PAK-LRVLDLSSNRLNR 286 (310)
T ss_dssp CCTTCCCEECC-SSCCC-SCCSCC--CSC-CSCEECCSCCCCS
T ss_pred CcCcCCEEECC-CCCCC-chhhhh--cCC-CCEEECCCCcCCC
Confidence 689999988 33332 112222 145 8888887776654
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=3.8e-13 Score=135.92 Aligned_cols=143 Identities=21% Similarity=0.271 Sum_probs=121.9
Q ss_pred CCCcCCCccchhccccccEEEccccccccCC-CCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC
Q 043332 483 GLRLQEFPVEQEWKENLERVSLMKNNIKEIP-SYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL 561 (897)
Q Consensus 483 ~~~~~~~p~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l 561 (897)
+..+..+|.. ....++.|++++|.+..++ ...+..+++|+.|++++| .+..++...|.++++|++|+|++|.++.+
T Consensus 20 ~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 20 NQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp SSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence 3445667754 3457899999999999984 456789999999999999 78888887789999999999999999988
Q ss_pred Ccc-cccCcccceeeccccccccCCc-chhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCCCCCC
Q 043332 562 PSS-VSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYSLPLK 628 (897)
Q Consensus 562 p~~-i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~ 628 (897)
|.. +..+++|++|+|++|......| .+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 764 8899999999999985444445 699999999999999999987 677999999999999998754
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=4.5e-13 Score=153.81 Aligned_cols=129 Identities=22% Similarity=0.394 Sum_probs=57.5
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeecc
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLR 577 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 577 (897)
+++.|++++|.+..+|...+ ++|++|++++| .+..+| ..+++|++|++++|.++.+|. ++. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 34444444444444443321 34444444444 333444 123444445554444444444 332 44444444
Q ss_pred ccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 578 YCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 578 ~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+| .++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|++|+++
T Consensus 129 ~N-~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls 188 (571)
T 3cvr_A 129 NN-QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVS 188 (571)
T ss_dssp SS-CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECC
T ss_pred CC-cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECc
Confidence 44 2333443 34444444444444444443 23444444444444444443 22 444444444
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=2.9e-14 Score=157.96 Aligned_cols=189 Identities=15% Similarity=0.072 Sum_probs=127.5
Q ss_pred CccchhccccccEEEccccccccCCC----CCCCCCCCccEEEccCCC--Ccc-cCChhH------hhCCCCccEEEecC
Q 043332 489 FPVEQEWKENLERVSLMKNNIKEIPS----YMSPHCDILSTLLLQANG--NLW-TIPECF------FVHMHGLKVLNLSH 555 (897)
Q Consensus 489 ~p~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~--~~~-~~~~~~------~~~l~~Lr~L~L~~ 555 (897)
++......+++++|++++|.+..... ..+..+++|++|++++|. .+. .+|..+ +..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33333344678899999887765321 224578899999998872 221 234433 46788999999999
Q ss_pred CCCCc-----CCcccccCcccceeeccccccccC----Cc-chhcc---------ccCCEeeccCCcCc--ccC---ccc
Q 043332 556 TDIEV-----LPSSVSDLTNLRSLLLRYCLRLRR----VP-SVAKL---------LALHYLDLEATRIE--EVP---EGM 611 (897)
Q Consensus 556 ~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~----lp-~~~~l---------~~L~~L~l~~~~l~--~lp---~~~ 611 (897)
|.++. +|..+..+++|++|+|++|..... ++ .+..+ ++|++|++++|.+. .+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 98875 677788889999999998854221 22 24444 78999999998875 444 467
Q ss_pred cCCCCCCEEeCCCCCCCc-----CCCCcccCCcccCeEecccCchhhh----hcHHHHHhhhcccceeEEEeccchh
Q 043332 612 EMLENLSYLYLYSLPLKK-----FPTGILPRLRDLYKLKLSFGREALR----ETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 612 ~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
..+++|++|++++|.+.. +.+..+.++++|++|+++ .+.... ..+..+..+++ |+.|+++.|.+..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls-~n~l~~~g~~~l~~~l~~~~~-L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ-DNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSA 258 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECC-SSCCHHHHHHHHHHHGGGCTT-CCEEECTTCCCCH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECc-CCCCCcHHHHHHHHHHccCCC-cCEEECCCCCCch
Confidence 788889999999888762 222125788888888888 333432 22344566677 8888887776544
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=9.6e-14 Score=152.21 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=99.2
Q ss_pred EccccccccCCCCCCCCCCCccEEEccCCCCcccCCh----hHhhCCC-CccEEEecCCCCCcC-CcccccC-----ccc
Q 043332 503 SLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPE----CFFVHMH-GLKVLNLSHTDIEVL-PSSVSDL-----TNL 571 (897)
Q Consensus 503 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l-----~~L 571 (897)
.++.|.+....+.+....++|++|++++| .+...+. ..|.+++ +|++|+|++|.++.. +..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44555555444444444555777777777 4666654 4556666 777777777777643 3444443 777
Q ss_pred ceeeccccccccCCc-chhc----c-ccCCEeeccCCcCcccCcc-----ccC-CCCCCEEeCCCCCCCcCCCCc----c
Q 043332 572 RSLLLRYCLRLRRVP-SVAK----L-LALHYLDLEATRIEEVPEG-----MEM-LENLSYLYLYSLPLKKFPTGI----L 635 (897)
Q Consensus 572 ~~L~L~~~~~~~~lp-~~~~----l-~~L~~L~l~~~~l~~lp~~-----~~~-l~~L~~L~l~~~~~~~~~~~~----l 635 (897)
++|+|++|......+ .+.. + ++|++|++++|.+...+.. +.. .++|++|++++|.+....... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 777777764322333 2333 3 6777777777777654432 333 257777777777665322111 2
Q ss_pred cCCc-ccCeEecccCchhhhhcHHHHHhh-----hcccceeEEEeccchh
Q 043332 636 PRLR-DLYKLKLSFGREALRETVEEAARL-----SNRLDTFEGHFSTLKD 679 (897)
Q Consensus 636 ~~l~-~L~~L~l~~~~~~~~~~~~~l~~l-----~~~L~~L~l~~~~l~~ 679 (897)
..+. +|++|+++ .+.........++.. ++ |+.|+++.|.+..
T Consensus 163 ~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 163 AAIPANVNSLNLR-GNNLASKNCAELAKFLASIPAS-VTSLDLSANLLGL 210 (362)
T ss_dssp HTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTT-CCEEECTTSCGGG
T ss_pred hcCCccccEeeec-CCCCchhhHHHHHHHHHhCCCC-CCEEECCCCCCCh
Confidence 3343 67777776 344444444444333 35 7777776666543
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=148.25 Aligned_cols=176 Identities=18% Similarity=0.093 Sum_probs=138.3
Q ss_pred hccccccEEEccccccccCCC----CCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc---CC--cc
Q 043332 494 EWKENLERVSLMKNNIKEIPS----YMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV---LP--SS 564 (897)
Q Consensus 494 ~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~---lp--~~ 564 (897)
....+++.|++++|.+..... ..+..+++|++|++++| .+..++...|.++++|++|+|++|.+.. ++ ..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 345689999999999876322 22346899999999999 6777877778999999999999999753 43 23
Q ss_pred cccCcccceeeccccccccCCcc-----hhccccCCEeeccCCcCccc-CccccCC---CCCCEEeCCCCCCCcCCCCcc
Q 043332 565 VSDLTNLRSLLLRYCLRLRRVPS-----VAKLLALHYLDLEATRIEEV-PEGMEML---ENLSYLYLYSLPLKKFPTGIL 635 (897)
Q Consensus 565 i~~l~~L~~L~L~~~~~~~~lp~-----~~~l~~L~~L~l~~~~l~~l-p~~~~~l---~~L~~L~l~~~~~~~~~~~~l 635 (897)
++.+++|++|++++| .++.+|. +..+++|++|++++|.+..+ |..+..+ ++|++|++++|.++.+|..+.
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc
Confidence 478999999999998 4565552 47889999999999999876 8888777 699999999999999988752
Q ss_pred cCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccch
Q 043332 636 PRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 636 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
++|++|+++ .+..... ..+..+++ |+.|+++.|.+.
T Consensus 272 ---~~L~~L~Ls-~N~l~~~--~~~~~l~~-L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 ---AKLRVLDLS-SNRLNRA--PQPDELPE-VDNLTLDGNPFL 307 (310)
T ss_dssp ---SCCSCEECC-SCCCCSC--CCTTSCCC-CSCEECSSTTTS
T ss_pred ---CCCCEEECC-CCcCCCC--chhhhCCC-ccEEECcCCCCC
Confidence 799999998 3443332 12567788 999999888764
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=2.7e-13 Score=134.60 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=124.6
Q ss_pred CCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCE
Q 043332 518 PHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHY 596 (897)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~ 596 (897)
..+++|+.|++++| .+..+| . +..+++|++|++++|.++.++ .+..+++|++|++++|......| .++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 46789999999998 677777 3 688999999999999887765 78999999999999985544455 7999999999
Q ss_pred eeccCCcCcc-cCccccCCCCCCEEeCCCCC-CCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEe
Q 043332 597 LDLEATRIEE-VPEGMEMLENLSYLYLYSLP-LKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHF 674 (897)
Q Consensus 597 L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 674 (897)
|++++|.+.. .|..++.+++|++|++++|. +..+|. +.++++|++|+++ ++.... +..+..+++ |+.|+++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~-~n~i~~--~~~l~~l~~-L~~L~l~~ 190 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQ-FDGVHD--YRGIEDFPK-LNQLYAFS 190 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECT-TBCCCC--CTTGGGCSS-CCEEEECB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECC-CCCCcC--hHHhccCCC-CCEEEeeC
Confidence 9999999985 67789999999999999998 888873 7899999999998 333333 226788888 99999988
Q ss_pred ccch
Q 043332 675 STLK 678 (897)
Q Consensus 675 ~~l~ 678 (897)
|.+.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 7654
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=4.1e-13 Score=156.01 Aligned_cols=168 Identities=19% Similarity=0.291 Sum_probs=136.7
Q ss_pred ccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccc
Q 043332 499 LERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRY 578 (897)
Q Consensus 499 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 578 (897)
+..+.+..+.+..+.. ...+++|+.|++++| .+..++. +..+++|++|+|++|.++.+|. +..+++|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3344455555554432 246788999999998 6777764 6899999999999999998876 89999999999999
Q ss_pred cccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHH
Q 043332 579 CLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVE 658 (897)
Q Consensus 579 ~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
| .+..+|.+..+++|++|+|++|.+..+| .+..+++|+.|++++|.+..++ .++.+++|+.|+++ ++.......
T Consensus 97 N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls-~N~l~~~~~- 170 (605)
T 1m9s_A 97 N-KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLE-DNQISDIVP- 170 (605)
T ss_dssp S-CCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGGSCTTCSEEECC-SSCCCCCGG-
T ss_pred C-CCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch--hhcccCCCCEEECc-CCcCCCchh-
Confidence 8 6777889999999999999999998874 6899999999999999998883 37899999999998 333333222
Q ss_pred HHHhhhcccceeEEEeccchhh
Q 043332 659 EAARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 659 ~l~~l~~~L~~L~l~~~~l~~~ 680 (897)
+..+++ |+.|+++.|.+..+
T Consensus 171 -l~~l~~-L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 171 -LAGLTK-LQNLYLSKNHISDL 190 (605)
T ss_dssp -GTTCTT-CCEEECCSSCCCBC
T ss_pred -hccCCC-CCEEECcCCCCCCC
Confidence 788888 99999998887664
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=3.4e-14 Score=157.50 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=89.6
Q ss_pred CCCCCccEEEccCCCCcccCChh----HhhCCCCccEEEecCCCCC----cCCccc-------ccCcccceeeccccccc
Q 043332 518 PHCDILSTLLLQANGNLWTIPEC----FFVHMHGLKVLNLSHTDIE----VLPSSV-------SDLTNLRSLLLRYCLRL 582 (897)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~Lr~L~L~~~~i~----~lp~~i-------~~l~~L~~L~L~~~~~~ 582 (897)
..+++|++|++++| .+...... .+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|...
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 35677888888877 34332211 2456777888888876544 234333 56777777777776433
Q ss_pred c----CCc-chhccccCCEeeccCCcCcc-----cCccccCC---------CCCCEEeCCCCCCCc--CCC--CcccCCc
Q 043332 583 R----RVP-SVAKLLALHYLDLEATRIEE-----VPEGMEML---------ENLSYLYLYSLPLKK--FPT--GILPRLR 639 (897)
Q Consensus 583 ~----~lp-~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l---------~~L~~L~l~~~~~~~--~~~--~~l~~l~ 639 (897)
. .+| .+.++++|++|++++|.+.. ++..+..+ ++|++|++++|.+.. ++. ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 2 245 46777777777777776642 23334344 677777777776642 221 1234566
Q ss_pred ccCeEecccCchhhhhcH----H-HHHhhhcccceeEEEeccc
Q 043332 640 DLYKLKLSFGREALRETV----E-EAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 640 ~L~~L~l~~~~~~~~~~~----~-~l~~l~~~L~~L~l~~~~l 677 (897)
+|++|+++ .+.....++ . .+..+++ |+.|+++.|.+
T Consensus 188 ~L~~L~L~-~n~l~~~g~~~l~~~~l~~~~~-L~~L~Ls~n~l 228 (386)
T 2ca6_A 188 LLHTVKMV-QNGIRPEGIEHLLLEGLAYCQE-LKVLDLQDNTF 228 (386)
T ss_dssp TCCEEECC-SSCCCHHHHHHHHHTTGGGCTT-CCEEECCSSCC
T ss_pred CcCEEECc-CCCCCHhHHHHHHHHHhhcCCC-ccEEECcCCCC
Confidence 67777666 223222221 1 3344555 66666666554
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=9.3e-14 Score=152.31 Aligned_cols=182 Identities=15% Similarity=0.138 Sum_probs=134.4
Q ss_pred hccccccEEEccccccccCCC----CCCCCCC-CccEEEccCCCCcccCChhHhhCC-----CCccEEEecCCCCCcCC-
Q 043332 494 EWKENLERVSLMKNNIKEIPS----YMSPHCD-ILSTLLLQANGNLWTIPECFFVHM-----HGLKVLNLSHTDIEVLP- 562 (897)
Q Consensus 494 ~~~~~l~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~i~~lp- 562 (897)
....++++|++++|.+...+. ..+..++ +|++|++++| .+.......+..+ ++|++|+|++|.++..+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 344569999999999998875 4556777 8999999999 6766655445554 99999999999998554
Q ss_pred cc----cccC-cccceeeccccccccCCc--chhc-----cccCCEeeccCCcCc-----ccCccccCCC-CCCEEeCCC
Q 043332 563 SS----VSDL-TNLRSLLLRYCLRLRRVP--SVAK-----LLALHYLDLEATRIE-----EVPEGMEMLE-NLSYLYLYS 624 (897)
Q Consensus 563 ~~----i~~l-~~L~~L~L~~~~~~~~lp--~~~~-----l~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L~l~~ 624 (897)
.. +..+ ++|++|++++|. ++..+ .+.. ..+|++|++++|.+. .++..+..+. +|++|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 33 4444 899999999985 55554 3433 369999999999887 4555666776 999999999
Q ss_pred CCCCcCCCCc----ccCC-cccCeEecccCchhhhhcHH----HHHhhh-cccceeEEEeccchh
Q 043332 625 LPLKKFPTGI----LPRL-RDLYKLKLSFGREALRETVE----EAARLS-NRLDTFEGHFSTLKD 679 (897)
Q Consensus 625 ~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~----~l~~l~-~~L~~L~l~~~~l~~ 679 (897)
|.+...+... +..+ ++|++|+++ .+.....+.. .+..+. + |+.|+++.|.+..
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~i~~~~~~~l~~~l~~~~~~-L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLS-ANLLGLKSYAELAYIFSSIPNH-VVSLNLCLNCLHG 239 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHHSCTT-CCEEECCSSCCCC
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECC-CCCCChhHHHHHHHHHhcCCCC-ceEEECcCCCCCc
Confidence 9987765422 3445 699999999 4555554443 344433 5 9999998887654
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=1.5e-12 Score=149.55 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=127.1
Q ss_pred cCCCccchhccccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCccc
Q 043332 486 LQEFPVEQEWKENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSV 565 (897)
Q Consensus 486 ~~~~p~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i 565 (897)
+..+|... ..+++.|++++|.+..+| ..+++|++|++++| .+..+|. +.+ +|++|+|++|.++.+|.
T Consensus 71 L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 71 LSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp CSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEECCSSCCSCCCC--
T ss_pred CCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch--hhc--CCCEEECCCCcCCCCCC--
Confidence 34455432 367899999999998887 34688999999998 6777877 343 89999999999988887
Q ss_pred ccCcccceeeccccccccCCcchhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCccc----
Q 043332 566 SDLTNLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDL---- 641 (897)
Q Consensus 566 ~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L---- 641 (897)
.+++|++|+|++| .++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.++.+|. + .. +|
T Consensus 138 -~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~-~~--~L~~~~ 206 (571)
T 3cvr_A 138 -LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V-PV--RNHHSE 206 (571)
T ss_dssp -CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C-C---------
T ss_pred -cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H-HH--hhhccc
Confidence 6889999999987 4666776 57889999999999888888 66 889999999999888887 3 33 56
Q ss_pred ---CeEecccCchhhhhcHHHHHhhhcccceeEEEeccchh
Q 043332 642 ---YKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 642 ---~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
+.|+++ ++... ..+..+..+++ |+.|+++.|.+..
T Consensus 207 ~~L~~L~Ls-~N~l~-~lp~~l~~l~~-L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 207 ETEIFFRCR-ENRIT-HIPENILSLDP-TCTIILEDNPLSS 244 (571)
T ss_dssp -CCEEEECC-SSCCC-CCCGGGGGSCT-TEEEECCSSSCCH
T ss_pred ccceEEecC-CCcce-ecCHHHhcCCC-CCEEEeeCCcCCC
Confidence 888888 33332 33445666888 8999998887754
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=8e-13 Score=157.61 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=96.8
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEE-----ccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCccc
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLL-----LQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNL 571 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L 571 (897)
..+++|++.+|.+...+.... ....|+.+. +..| .+. ++...|..++.|++|+|++|.+..+|..++.+.+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIEN-RMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCcccccc-cee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 457888888887776654332 222333332 2222 222 45566788999999999999999999999999999
Q ss_pred ceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCc
Q 043332 572 RSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGR 650 (897)
Q Consensus 572 ~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (897)
++|+|++| .++.+| .+++|++|++|+|++|.++.+|..+++|.+|++|+|++|.+..+|.+ |++|++|++|+++ ++
T Consensus 250 ~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~-~N 326 (727)
T 4b8c_D 250 TRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVE-GN 326 (727)
T ss_dssp SCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECT-TS
T ss_pred CEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCC-CC
Confidence 99999998 556888 69999999999999999999999999999999999999999999887 6999999999998 44
Q ss_pred hhhhh
Q 043332 651 EALRE 655 (897)
Q Consensus 651 ~~~~~ 655 (897)
.....
T Consensus 327 ~l~~~ 331 (727)
T 4b8c_D 327 PLEKQ 331 (727)
T ss_dssp CCCSH
T ss_pred ccCCC
Confidence 44333
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.2e-12 Score=126.19 Aligned_cols=131 Identities=24% Similarity=0.261 Sum_probs=79.4
Q ss_pred ccccEEEccccccc--cCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc-CCcccccCcccce
Q 043332 497 ENLERVSLMKNNIK--EIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV-LPSSVSDLTNLRS 573 (897)
Q Consensus 497 ~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~ 573 (897)
.++++|++++|.+. .+|.. +..+++|++|++++| .+..+ ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 45677777777666 55443 455666666666666 34444 234566666666666666665 5554555666666
Q ss_pred eeccccccccCCc---chhccccCCEeeccCCcCcccCc----cccCCCCCCEEeCCCCCCCcCCC
Q 043332 574 LLLRYCLRLRRVP---SVAKLLALHYLDLEATRIEEVPE----GMEMLENLSYLYLYSLPLKKFPT 632 (897)
Q Consensus 574 L~L~~~~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~~~~~~ 632 (897)
|++++| .++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+.++|.
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 666665 344433 35666666666666666666655 46666666666666666655554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=8.8e-13 Score=124.34 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=83.3
Q ss_pred CCccEEEccCCCCcc--cCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCEe
Q 043332 521 DILSTLLLQANGNLW--TIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYL 597 (897)
Q Consensus 521 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L 597 (897)
++|+.|++++| .+. .+|. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+| .++++++|++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45556666655 333 4444 246667777777777777666 556777777777777764433366 45667777777
Q ss_pred eccCCcCcccC--ccccCCCCCCEEeCCCCCCCcCCC---CcccCCcccCeEecc
Q 043332 598 DLEATRIEEVP--EGMEMLENLSYLYLYSLPLKKFPT---GILPRLRDLYKLKLS 647 (897)
Q Consensus 598 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 647 (897)
++++|.++.+| ..++.+++|++|++++|.+..+|. ..++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777654 667777888888888877777765 446777777777664
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1.6e-12 Score=125.42 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=101.6
Q ss_pred CCCCccEEEccCCCCcc--cCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCC
Q 043332 519 HCDILSTLLLQANGNLW--TIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALH 595 (897)
Q Consensus 519 ~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~ 595 (897)
..++|++|++++| .+. .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.....+| .+.++++|+
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478899999988 455 66655 57888999999999998877 678889999999999885444477 466789999
Q ss_pred EeeccCCcCcccC--ccccCCCCCCEEeCCCCCCCcCCC---CcccCCcccCeEecc
Q 043332 596 YLDLEATRIEEVP--EGMEMLENLSYLYLYSLPLKKFPT---GILPRLRDLYKLKLS 647 (897)
Q Consensus 596 ~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 647 (897)
+|++++|.++.+| ..+..+++|++|++++|.+..+|. ..+..+++|++|+++
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 9999999888876 678888999999999998888876 456788888888877
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=122.14 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=81.7
Q ss_pred cEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc--chhccccCCEeeccC
Q 043332 524 STLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEA 601 (897)
Q Consensus 524 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~ 601 (897)
++++++++ .+..+|..+ .+.|++|++++|.++.+|..+..+.+|++|+|++|. ++.++ .|.++++|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 34455544 445555433 245677777777777777667777777777777763 44444 477777777777777
Q ss_pred CcCcccCc-cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 602 TRIEEVPE-GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 602 ~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
|.++.+|. .+..+++|++|++++|.+..+|.+.+..+++|+.|+++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 77777654 47778888888888888888777767778888888777
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=1e-11 Score=122.36 Aligned_cols=121 Identities=25% Similarity=0.346 Sum_probs=58.6
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChh-HhhCCCCccEEEecCCCCCcC-CcccccCcccceeecc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPEC-FFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLR 577 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 577 (897)
+.+++++|.+..+|.... .+|++|++++| .+..++.. +|..+++|++|+|++|.++.+ |..+..++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-------- 78 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--------
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc--------
Confidence 455566666555554332 24555555554 33333332 234455555555555554433 33444444
Q ss_pred ccccccCCcchhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 578 YCLRLRRVPSVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 578 ~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+|++|++++|.++.+|.. +..+++|++|++++|.++.+++..++.+++|++|+++
T Consensus 79 ---------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 79 ---------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp ---------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred ---------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 445555555544444332 4455555555555555554444444555555555554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=4.3e-12 Score=123.26 Aligned_cols=126 Identities=18% Similarity=0.256 Sum_probs=96.0
Q ss_pred CCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-c-hhccccCC
Q 043332 518 PHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-S-VAKLLALH 595 (897)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~ 595 (897)
.++.+|+.|++++| .+..++. +....++|++|++++|.++.+ ..+..+++|++|++++| .++.+| . +..+++|+
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 35677888888887 5666653 333344888888888888877 56888888888888887 455666 4 48888888
Q ss_pred EeeccCCcCcccCc--cccCCCCCCEEeCCCCCCCcCCCC---cccCCcccCeEecc
Q 043332 596 YLDLEATRIEEVPE--GMEMLENLSYLYLYSLPLKKFPTG---ILPRLRDLYKLKLS 647 (897)
Q Consensus 596 ~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~ 647 (897)
+|++++|.+..+|. .++.+++|++|++++|.+..+|.. .+..+++|+.|+++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 99988888888886 788888899999988888777654 35677777777776
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.28 E-value=2e-10 Score=127.01 Aligned_cols=291 Identities=16% Similarity=0.143 Sum_probs=173.0
Q ss_pred ccccchhhHHHHHHHHHHhc----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhcc---CCCcEEEEEEeCCCCCHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQ 211 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~ 211 (897)
..++|| +++++++..++. ....+.+.|+|++|+||||+|+.+++...... +.-...+|+.+....+...+.
T Consensus 19 ~~~~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHR--EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTC--HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCH--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 579999 778888888874 34567899999999999999999998863211 112356788888888888999
Q ss_pred HHHHHHHcCCCCCCh-hHHHHHHHHHHHHh-ccCeEEEEEcCCCcccc----cccc---ccCCCCC--CCCcEEEEEeCC
Q 043332 212 NEIAAALNQSLPENE-DEVRRAGRLSGMLK-AKAKFVLILDDMWKEFR----LEEV---GIPEPSE--ENGCKLVITTRS 280 (897)
Q Consensus 212 ~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~~----~~~~---~~~~~~~--~~gs~iivTTR~ 280 (897)
..++.+++....... ........+...+. .+++.+|||||++.... .+.+ ....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999999976443222 23333445555553 34689999999986421 1111 1111111 345678888876
Q ss_pred chh--------hcccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhC---CChHHH-HHHHhhhc-
Q 043332 281 LGV--------CRFMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECA---GLPLAI-VTVASCMR- 347 (897)
Q Consensus 281 ~~v--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~Plal-~~~~~~L~- 347 (897)
... ...+....+.+++++.++..+++...+..... ...-..+....+++.++ |.|..+ ..+..+..
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN-PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC-TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 532 22222234899999999999999887643110 01111345667888888 999433 33322221
Q ss_pred ----CC--CChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhh-cCCCCcccCHHHHHHHHHH-
Q 043332 348 ----GV--DEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCA-LYPEDFAIPKEELIDYWIA- 419 (897)
Q Consensus 348 ----~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~li~~w~a- 419 (897)
+. -+.+.+..++.... ...+.-++..|+ .+.+..+...+ ++...-.+....+.+....
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLP-LHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSC-HHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 11 13455655555432 123445677887 55555555454 3432223444443333211
Q ss_pred ---hCcchhhhhhhhHHhHHHHHHHHHHHccccccc
Q 043332 420 ---EGFIEEVKDVQAKNDRGHTILNRLVNCCLLESA 452 (897)
Q Consensus 420 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 452 (897)
.| +. .........+++.|...++++..
T Consensus 322 ~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 12 11 11235677899999999999874
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.6e-11 Score=121.01 Aligned_cols=125 Identities=17% Similarity=0.245 Sum_probs=105.4
Q ss_pred cEEEecCCCCCcCCcccccCcccceeeccccccccCCc-c--hhccccCCEeeccCCcCccc-CccccCCCCCCEEeCCC
Q 043332 549 KVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-S--VAKLLALHYLDLEATRIEEV-PEGMEMLENLSYLYLYS 624 (897)
Q Consensus 549 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~--~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~ 624 (897)
++++++++.++.+|..+.. +|++|++++| .++.++ . +..+++|++|++++|.++.+ |..+..+.+|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888888888876654 8899999987 455555 3 88999999999999999887 67799999999999999
Q ss_pred CCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhcccceeEEEeccch
Q 043332 625 LPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 625 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~l~ 678 (897)
|.+..+++..++++++|++|+++ ++......+..+..+++ |+.|+++.|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLY-DNQISCVMPGSFEHLNS-LTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECC-SSCCCEECTTSSTTCTT-CCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECC-CCcCCeeCHHHhhcCCC-CCEEEeCCCCcc
Confidence 99999998888999999999999 45555555566788888 999999988764
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=3e-11 Score=119.05 Aligned_cols=123 Identities=30% Similarity=0.449 Sum_probs=106.9
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceeeccc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLLLRY 578 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 578 (897)
+.+++++|.+..+|.... ++|++|++++| .+..+|. .|.++++|++|+|++|.|+.++. .+..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n-~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGN-QFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSS-CCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCC-cCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 578899999999987643 68999999999 7788885 56999999999999999998764 589999999999999
Q ss_pred cccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCC
Q 043332 579 CLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLK 628 (897)
Q Consensus 579 ~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~ 628 (897)
|. ++.++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 85 55555 599999999999999999999875 889999999999998653
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=8.2e-12 Score=117.61 Aligned_cols=122 Identities=21% Similarity=0.272 Sum_probs=106.2
Q ss_pred ccccEEEccccccc--cCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc-CCcccccCcccce
Q 043332 497 ENLERVSLMKNNIK--EIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV-LPSSVSDLTNLRS 573 (897)
Q Consensus 497 ~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~ 573 (897)
.++++|++++|.+. .+|. .+..+++|+.|++++| .+..+ ..+..+++|++|++++|.++. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 57999999999998 6665 5678999999999999 67766 446899999999999999997 7777778999999
Q ss_pred eeccccccccCCc---chhccccCCEeeccCCcCcccCc----cccCCCCCCEEeCC
Q 043332 574 LLLRYCLRLRRVP---SVAKLLALHYLDLEATRIEEVPE----GMEMLENLSYLYLY 623 (897)
Q Consensus 574 L~L~~~~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~ 623 (897)
|++++|. ++.+| .++.+++|++|++++|.+..+|. .++.+++|++|+++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999985 56543 58999999999999999998886 68999999999875
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.9e-10 Score=127.28 Aligned_cols=291 Identities=14% Similarity=0.159 Sum_probs=167.1
Q ss_pred ccccchhhHHHHHHHHHHhc----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEI 214 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 214 (897)
..++|| +++++.+.+++. ....+.+.|+|++|+||||||+.+++........-..++|+.+....+...+...+
T Consensus 20 ~~~~gr--~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHR--EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTC--HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 579999 788888888876 44567899999999999999999999863221102356788877666777788888
Q ss_pred HHHHcCCCCCC-hhHHHHHHHHHHHHhc-cCeEEEEEcCCCccc------cccccccCCCC-CCCCcEEEEEeCCchhhc
Q 043332 215 AAALNQSLPEN-EDEVRRAGRLSGMLKA-KAKFVLILDDMWKEF------RLEEVGIPEPS-EENGCKLVITTRSLGVCR 285 (897)
Q Consensus 215 ~~~l~~~~~~~-~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~------~~~~~~~~~~~-~~~gs~iivTTR~~~v~~ 285 (897)
+.+++...... .........+...+.. +++.+||+|+++... .+..+...... ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 77776543221 1233334444444433 458999999997632 12222111100 134556788888654322
Q ss_pred c--------cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhC---CChHHHHH-HHhhhc-----C
Q 043332 286 F--------MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECA---GLPLAIVT-VASCMR-----G 348 (897)
Q Consensus 286 ~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~Plal~~-~~~~L~-----~ 348 (897)
. +....+.+++++.++.++++...+..... ...-..++...+++.++ |.|..+.. +..+.. +
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 2 11124899999999999999886542111 11222456677777777 99984433 322221 1
Q ss_pred --CCChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcCCC-C-cccCHHHHHHHHH--Hh--
Q 043332 349 --VDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPE-D-FAIPKEELIDYWI--AE-- 420 (897)
Q Consensus 349 --~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w~--a~-- 420 (897)
.-+.+.++.++.... ...+.-.+..+| .+.+..+..++..-+ + -.+....+.+... ++
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLP-FHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSC-HHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 112344554444332 123445567787 555655555553211 1 1133333322221 11
Q ss_pred CcchhhhhhhhHHhHHHHHHHHHHHccccccc
Q 043332 421 GFIEEVKDVQAKNDRGHTILNRLVNCCLLESA 452 (897)
Q Consensus 421 g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 452 (897)
| +. .........+++.|...++++..
T Consensus 323 g-~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 00 11124567789999999999763
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=3.1e-13 Score=156.10 Aligned_cols=98 Identities=31% Similarity=0.379 Sum_probs=69.9
Q ss_pred CccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCC
Q 043332 547 GLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSL 625 (897)
Q Consensus 547 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 625 (897)
.|++|+|++|.++.+|. ++.+++|++|+|++| .++.+| .++++++|++|++++|.++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 46677777777777775 777777777777776 455666 5777777777777777777776 6777777777777777
Q ss_pred CCCcCC-CCcccCCcccCeEecc
Q 043332 626 PLKKFP-TGILPRLRDLYKLKLS 647 (897)
Q Consensus 626 ~~~~~~-~~~l~~l~~L~~L~l~ 647 (897)
.++.++ +..++.+++|++|+++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECT
T ss_pred CCCCCCCcHHHhcCCCCCEEEec
Confidence 777763 3335777777777776
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=4.8e-12 Score=150.93 Aligned_cols=126 Identities=23% Similarity=0.302 Sum_probs=94.5
Q ss_pred ccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeecccccccc
Q 043332 504 LMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLR 583 (897)
Q Consensus 504 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 583 (897)
+..|.+. ++...+..++.|++|+|++| .+..+|..+| ++++|++|+|++|.|+.+|..++.|.+|++|+|++|. ++
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ---------------CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred cccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CC
Confidence 3334333 34455677888999999888 5678887765 7888999999999988888888889999999999874 55
Q ss_pred CCc-chhccccCCEeeccCCcCcccCccccCCCCCCEEeCCCCCCCcCCCC
Q 043332 584 RVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYLYLYSLPLKKFPTG 633 (897)
Q Consensus 584 ~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 633 (897)
.+| .+++|.+|++|+|++|.+..+|..|++|++|++|+|++|.+...++.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 788 68889999999999998888888899999999999998887755443
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1.7e-11 Score=141.59 Aligned_cols=137 Identities=20% Similarity=0.182 Sum_probs=108.2
Q ss_pred cEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeecccc
Q 043332 500 ERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYC 579 (897)
Q Consensus 500 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 579 (897)
..+.+.+|.+..++. ..|++|++++| .+..+|. |..+++|++|+|++|.++.+|..++.+++|++|+|++|
T Consensus 426 ~~l~l~~n~i~~l~~------~~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 426 RSKFLLENSVLKMEY------ADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHH------TTCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhhhhcccccccCc------cCceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 334444555555432 24788888888 6777775 68889999999999999999999999999999999997
Q ss_pred ccccCCcchhccccCCEeeccCCcCccc--CccccCCCCCCEEeCCCCCCCcCCCCc---ccCCcccCeEec
Q 043332 580 LRLRRVPSVAKLLALHYLDLEATRIEEV--PEGMEMLENLSYLYLYSLPLKKFPTGI---LPRLRDLYKLKL 646 (897)
Q Consensus 580 ~~~~~lp~~~~l~~L~~L~l~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l 646 (897)
.++.+|.++++++|++|++++|.++.+ |..++.+++|++|++++|.++..|+.. +..+++|+.|++
T Consensus 497 -~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 -ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 566788889999999999999999887 888999999999999999988887643 233677777753
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=4.5e-10 Score=124.38 Aligned_cols=293 Identities=14% Similarity=0.097 Sum_probs=172.1
Q ss_pred ccccchhhHHHHHHHHHHhcC----CCee--EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMG----DKVT--KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
..++|| +++++++.+++.. .... .+.|+|++|+||||+|+.+++..... . -..++|+.++...+...+..
T Consensus 17 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHR--EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK-T-TARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTC--HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS-C-CCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh-c-CeeEEEEeCccCCCHHHHHH
Confidence 579999 7777887777753 3334 89999999999999999999986311 1 23567888888778888999
Q ss_pred HHHHHHcCCCCCC-hhHHHHHHHHHHHHh-ccCeEEEEEcCCCcc--ccccccccCCCCC-C---CCcEEEEEeCCchhh
Q 043332 213 EIAAALNQSLPEN-EDEVRRAGRLSGMLK-AKAKFVLILDDMWKE--FRLEEVGIPEPSE-E---NGCKLVITTRSLGVC 284 (897)
Q Consensus 213 ~i~~~l~~~~~~~-~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~--~~~~~~~~~~~~~-~---~gs~iivTTR~~~v~ 284 (897)
.++..++...... .........+...+. .+++.+||+|+++.. ..+..+...+... . .+..||+||+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 9998887543321 123333334444443 255889999999764 2222332222111 1 466788888765432
Q ss_pred cc--------cccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHh---------CCChHHHHHHHhh-h
Q 043332 285 RF--------MDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEEC---------AGLPLAIVTVASC-M 346 (897)
Q Consensus 285 ~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~G~Plal~~~~~~-L 346 (897)
.. +....+.+.+++.++..+++...+..... ...-..+....+++.+ +|.|..+..+... .
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22 22224899999999999999887643111 0112246778899999 7987655443322 1
Q ss_pred c----CCCChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcCC---CCcccCHHHHHHHHHH
Q 043332 347 R----GVDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYP---EDFAIPKEELIDYWIA 419 (897)
Q Consensus 347 ~----~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~li~~w~a 419 (897)
. .....-.+..+...+.... ...+.-.+..|+ .+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLP-LHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSC-HHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCC-HHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 1111112222222211111 112233355677 56666666666543 2214555666554432
Q ss_pred ----hCcchhhhhhhhHHhHHHHHHHHHHHcccccccc
Q 043332 420 ----EGFIEEVKDVQAKNDRGHTILNRLVNCCLLESAK 453 (897)
Q Consensus 420 ----~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 453 (897)
.|.. .........++++|...+++....
T Consensus 321 ~~~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 321 VCEEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1111 112245678999999999998854
No 140
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.23 E-value=2e-11 Score=107.41 Aligned_cols=78 Identities=13% Similarity=0.284 Sum_probs=67.7
Q ss_pred chHHHHhHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 043332 6 TILQFFECVGPPIRQYVRRHRKLSEIMKNLERPLQELNCKKADIEATLKAECDLGNKQPSNEVNDWLENVERINSEAHSF 85 (897)
Q Consensus 6 ~i~~~~~~l~~~l~~~~~~~~~~~~~i~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~v~~Wl~~l~~~~~~~~d~ 85 (897)
++.++++++.+++.+++.+..++++++++|+++|++|++++.|++ .++....+++++.|+++||+++||+||+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~-------~~~~~~~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIG-------EVPREQLDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-------HhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 445788999999999999999999999999999999999888854 3211335789999999999999999999
Q ss_pred HHHHh
Q 043332 86 EEEVK 90 (897)
Q Consensus 86 ~d~~~ 90 (897)
+|+|.
T Consensus 75 iD~f~ 79 (115)
T 3qfl_A 75 VDKFL 79 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=6.4e-11 Score=115.09 Aligned_cols=101 Identities=31% Similarity=0.481 Sum_probs=55.9
Q ss_pred CCccEEEecCCCCCcCCcc-cccCcccceeeccccccccCCc-c-hhccccCCEeeccCCcCcccCcc-ccCCCCCCEEe
Q 043332 546 HGLKVLNLSHTDIEVLPSS-VSDLTNLRSLLLRYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLY 621 (897)
Q Consensus 546 ~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~ 621 (897)
++|++|++++|.++.+|.. +..+++|++|++++| .++.+| . +..+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3445555555555444332 344555555555554 233333 2 45555566666666666555543 45666666666
Q ss_pred CCCCCCCcCCCCcccCCcccCeEecc
Q 043332 622 LYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 622 l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
+++|.+..+|...+..+++|++|+++
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEec
Confidence 66666666666555666666666666
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=2e-11 Score=118.58 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=110.8
Q ss_pred hhCCCCccEEEecCCCCCcCCcccccCc-ccceeeccccccccCCcchhccccCCEeeccCCcCcccCccc-cCCCCCCE
Q 043332 542 FVHMHGLKVLNLSHTDIEVLPSSVSDLT-NLRSLLLRYCLRLRRVPSVAKLLALHYLDLEATRIEEVPEGM-EMLENLSY 619 (897)
Q Consensus 542 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~ 619 (897)
|..+.+|++|++++|.++.+|. +..+. +|++|++++| .++.++.+..+++|++|++++|.++.+|..+ +.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4678899999999999998875 55555 9999999998 5666678999999999999999999998775 99999999
Q ss_pred EeCCCCCCCcCCC-CcccCCcccCeEecccCchhhhhc---HHHHHhhhcccceeEEEeccchh
Q 043332 620 LYLYSLPLKKFPT-GILPRLRDLYKLKLSFGREALRET---VEEAARLSNRLDTFEGHFSTLKD 679 (897)
Q Consensus 620 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~l~~ 679 (897)
|++++|.+..+|. ..++.+++|++|+++ ++...... ...+..+++ |+.|+++.+....
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~-~N~i~~~~~~~~~~~~~l~~-L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQ-VRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTT-CSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEec-CCCCCCcHhHHHHHHHHCCc-cceeCCCcCCHHH
Confidence 9999999998886 346899999999998 33333221 124788999 9999999887654
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=8.7e-10 Score=121.77 Aligned_cols=288 Identities=11% Similarity=0.060 Sum_probs=166.0
Q ss_pred ccccchhhHHHHHHHHHHhc----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhcc----CC-CcEEEEEEeCCCC-CHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKET----NK-FNVVIWVTVSQPL-DLI 208 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~-f~~~~wv~vs~~~-~~~ 208 (897)
..++|| +++++++.+++. ....+.+.|+|++|+||||+|+.+++...... .. ...++|+.++... +..
T Consensus 20 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFR--EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTC--HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 579999 667777765553 44567999999999999999999999863221 11 3457788877766 788
Q ss_pred HHHHHHHHHHc-CCCCC-ChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc--cccc-ccCCCCCCCCcEEEEEeCCchh
Q 043332 209 KLQNEIAAALN-QSLPE-NEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR--LEEV-GIPEPSEENGCKLVITTRSLGV 283 (897)
Q Consensus 209 ~~~~~i~~~l~-~~~~~-~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~--~~~~-~~~~~~~~~gs~iivTTR~~~v 283 (897)
.+...++.++. ..... ..........+...+. .++.+|||||++.... .... ...+.....+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 88888888883 22111 1112333445555553 3344999999976421 1111 1111111157789999987532
Q ss_pred h--------cccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhC---CChH-HHHHHHhhh--c-C
Q 043332 284 C--------RFMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECA---GLPL-AIVTVASCM--R-G 348 (897)
Q Consensus 284 ~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---G~Pl-al~~~~~~L--~-~ 348 (897)
. .... ..+.+++++.++..++|...+..... ...-..+....+++.++ |.|. |+..+-.+. . +
T Consensus 177 ~~~l~~~l~sr~~-~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 177 RDYMEPRVLSSLG-PSVIFKPYDAEQLKFILSKYAEYGLI-KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTSCHHHHHTCC-CEEEECCCCHHHHHHHHHHHHHHTSC-TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HhhhCHHHHhcCC-CeEEECCCCHHHHHHHHHHHHHhhcc-cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 1 1111 14899999999999999987642100 01111345677888888 9887 444433222 1 1
Q ss_pred --CCChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHHHHHHHhCcchhh
Q 043332 349 --VDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEV 426 (897)
Q Consensus 349 --~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 426 (897)
.-+.+.+..+++.... ..+.-+++.|+ .+.|..+..++....+-.+. +.....--..| +.
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~-~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALP-FHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSC-HHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred CCccCHHHHHHHHHHHhc-------------chHHHHHHcCC-HHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC--
Confidence 1235566666654321 23455677887 56555555555411100010 01111111111 00
Q ss_pred hhhhhHHhHHHHHHHHHHHccccccc
Q 043332 427 KDVQAKNDRGHTILNRLVNCCLLESA 452 (897)
Q Consensus 427 ~~~~~~~~~~~~~~~~L~~~~ll~~~ 452 (897)
.........+++.|...++++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11235667889999999999874
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.9e-10 Score=111.77 Aligned_cols=127 Identities=26% Similarity=0.445 Sum_probs=109.4
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcc-cccCcccceeec
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSS-VSDLTNLRSLLL 576 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~L 576 (897)
..+.++++++.+..+|... .++|++|++++| .+..++...|..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCCC---CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3467889999999988654 368999999999 67888888889999999999999999988765 689999999999
Q ss_pred cccccccCCc-c-hhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCc
Q 043332 577 RYCLRLRRVP-S-VAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKK 629 (897)
Q Consensus 577 ~~~~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~ 629 (897)
++| .++.+| . +..+++|++|++++|.++.+|.. +..+++|++|++++|.+..
T Consensus 84 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 998 456666 3 79999999999999999998877 5889999999999986543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=4e-13 Score=133.45 Aligned_cols=125 Identities=28% Similarity=0.377 Sum_probs=71.2
Q ss_pred hhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chhccccCCEeeccCCcCcccCccccCCCCCCEE
Q 043332 542 FVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVAKLLALHYLDLEATRIEEVPEGMEMLENLSYL 620 (897)
Q Consensus 542 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 620 (897)
|..+++|++|++++|.++.+| .+..+++|++|++++| .++.+| .+..+++|++|++++|.++.+| .++.+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 355666666666666666655 5666666666666665 344555 3555566666666666666555 45566666666
Q ss_pred eCCCCCCCcCCC-CcccCCcccCeEecccCchhhhh----------cHHHHHhhhcccceeE
Q 043332 621 YLYSLPLKKFPT-GILPRLRDLYKLKLSFGREALRE----------TVEEAARLSNRLDTFE 671 (897)
Q Consensus 621 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~----------~~~~l~~l~~~L~~L~ 671 (897)
++++|.+..++. ..+..+++|++|+++ ++..... ....+..+++ |+.|+
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~~~~~~~~l~~-L~~Ld 180 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLA-GNPLYNDYKENNATSEYRIEVVKRLPN-LKKLD 180 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEEC-SCHHHHHHHTTTTHHHHHHHHHHHCSS-CSEEC
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEec-CCccccccccccchHHHHHHHHHhCCC-cEEEC
Confidence 666666655443 224566666666665 2222111 1123566666 77665
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.09 E-value=6.4e-10 Score=114.29 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=111.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++|| +..++.+..++.... .+.+.|+|++|+||||+|+.+++..... ..+. . .... .... ...+...
T Consensus 23 ~~~~g~--~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~-~~~~--~-~~~~---~~~~-~~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT--A-TPCG---VCDN-CREIEQG 92 (250)
T ss_dssp GGCCSC--HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT-TCSC--S-SCCS---CSHH-HHHHHTT
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC--C-CCCc---ccHH-HHHHhcc
Confidence 469998 778888888886544 4689999999999999999999886321 1110 0 0000 0000 0000000
Q ss_pred HcCC----CCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCchhh-cc
Q 043332 218 LNQS----LPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLGVC-RF 286 (897)
Q Consensus 218 l~~~----~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v~-~~ 286 (897)
.... .............+...+. .+++.+||+||++.. ..+..+...+.....+..+|+||+..... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 0000111112222322221 245789999999763 33344433332234567888888764321 11
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhh
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASC 345 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~ 345 (897)
. ....+.+++++.++..+++...+..... .-..+....|++.|+|.|..+..+...
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1233899999999999999887654321 112456778999999999988776543
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=1.9e-09 Score=108.97 Aligned_cols=183 Identities=11% Similarity=0.139 Sum_probs=113.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
..++|+ ++.++.+.+++.....+.+.|+|++|+|||++|+.+++..... ..-...+.+..+...+...+...+....
T Consensus 17 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 17 DEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGCCSC--HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHHh
Confidence 468998 7788889888887766569999999999999999999875221 1112234445444444333322221111
Q ss_pred cCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCCchhh-cc-c-ccceEe
Q 043332 219 NQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRSLGVC-RF-M-DCKEIG 293 (897)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~~v~-~~-~-~~~~~~ 293 (897)
.... ...+++.+||+||++... ..+.+...+.....+.++|+||+..... .. . ....+.
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 1100 112568899999997642 2233322222224567888888764321 11 1 112489
Q ss_pred ccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHH
Q 043332 294 VELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 294 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~ 343 (897)
+.+++.++..+++...+..... .-..+....+++.++|.|..+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999887643221 1124567788999999998655443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=1.1e-11 Score=123.09 Aligned_cols=144 Identities=24% Similarity=0.299 Sum_probs=116.9
Q ss_pred ccEEEcccc--ccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 499 LERVSLMKN--NIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 499 l~~l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
++...+.+. .++.+|. .+..+++|++|++++| .+..+| .+.++++|++|++++|.++.+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 444444443 3444443 4567899999999999 677787 468899999999999999999988888999999999
Q ss_pred cccccccCCcchhccccCCEeeccCCcCcccCc--cccCCCCCCEEeCCCCCCCcCCCC----------cccCCcccCeE
Q 043332 577 RYCLRLRRVPSVAKLLALHYLDLEATRIEEVPE--GMEMLENLSYLYLYSLPLKKFPTG----------ILPRLRDLYKL 644 (897)
Q Consensus 577 ~~~~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L 644 (897)
++| .++.+|.+..+++|++|++++|.+..+|. .+..+++|++|++++|.+...++. .+..+++|+.|
T Consensus 101 ~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 998 56778889999999999999999998765 689999999999999987654332 36788999999
Q ss_pred ecc
Q 043332 645 KLS 647 (897)
Q Consensus 645 ~l~ 647 (897)
+..
T Consensus 180 d~~ 182 (198)
T 1ds9_A 180 DGM 182 (198)
T ss_dssp CCG
T ss_pred CCc
Confidence 743
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.4e-09 Score=105.00 Aligned_cols=96 Identities=23% Similarity=0.446 Sum_probs=56.4
Q ss_pred cEEEecCCCCCcCCcccccCcccceeeccccccccCC-c-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCC
Q 043332 549 KVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRV-P-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSL 625 (897)
Q Consensus 549 r~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 625 (897)
+.++++++.++.+|..+. .+|++|+|++|. ++.+ | .+.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455566655555555443 556666666553 3333 3 356666666666666666666554 356666666666666
Q ss_pred CCCcCCCCcccCCcccCeEecc
Q 043332 626 PLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 626 ~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
.+..+|++.++++++|++|+++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECC
T ss_pred ccceeCHHHhccccCCCEEEeC
Confidence 6666666555666666666665
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=4.4e-10 Score=121.12 Aligned_cols=178 Identities=16% Similarity=0.182 Sum_probs=121.1
Q ss_pred ccccEEEccccccc--------------------cCCCCCCCC--------CCCccEEEccCCCCcccCChhHhhCCCCc
Q 043332 497 ENLERVSLMKNNIK--------------------EIPSYMSPH--------CDILSTLLLQANGNLWTIPECFFVHMHGL 548 (897)
Q Consensus 497 ~~l~~l~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 548 (897)
.+++.|++++|.+. .+|...|.+ |++|+.+.+.. .+..++...|.++++|
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCccc
Confidence 45777777777766 567777788 99999999987 5788888889999999
Q ss_pred cEEEecCCCCCcCCc-ccccCcccceeeccccc-----------------ccc---------CCc---------------
Q 043332 549 KVLNLSHTDIEVLPS-SVSDLTNLRSLLLRYCL-----------------RLR---------RVP--------------- 586 (897)
Q Consensus 549 r~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~-----------------~~~---------~lp--------------- 586 (897)
+.|++++|.+..++. .+..+.++.++.+.... .++ .++
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 999999998876654 45666667666654411 111 000
Q ss_pred -------------ch-hccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccC-eEecccCc
Q 043332 587 -------------SV-AKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLY-KLKLSFGR 650 (897)
Q Consensus 587 -------------~~-~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~ 650 (897)
.+ ..+.+|+.|++++|+++.+|.. |.++.+|+.|++..| +..++.+.|.++++|+ .+.+. .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~--~ 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP--A 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC--T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc--c
Confidence 00 1256788888887777777765 777778888888776 7777777777888887 77776 2
Q ss_pred hhhhhcHHHHHhhhcccceeEEEeccchhh
Q 043332 651 EALRETVEEAARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 651 ~~~~~~~~~l~~l~~~L~~L~l~~~~l~~~ 680 (897)
.........+..+.+ |+.+++..+.+..+
T Consensus 284 ~l~~I~~~aF~~c~~-L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDN-LRYVLATGDKITTL 312 (329)
T ss_dssp TCCEECTTTTTTCTT-EEEEEECSSCCCEE
T ss_pred cceEEchhhhhCCcc-CCEEEeCCCccCcc
Confidence 333333345666666 77777665555443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.5e-09 Score=104.43 Aligned_cols=97 Identities=25% Similarity=0.425 Sum_probs=64.9
Q ss_pred ccEEEecCCCCCcCCcccccCcccceeeccccccccCC-c-chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCC
Q 043332 548 LKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRV-P-SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYS 624 (897)
Q Consensus 548 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~ 624 (897)
.++++++++.++.+|..+. .+|++|+|++| .++.+ | .+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566666666666666553 66677777765 33434 3 466777777777777777766655 46777777777777
Q ss_pred CCCCcCCCCcccCCcccCeEecc
Q 043332 625 LPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 625 ~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
|.++.+|++.++++++|++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CccCEeCHHHhcCCCCCCEEEeC
Confidence 77777776666777777777776
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.3e-09 Score=105.10 Aligned_cols=104 Identities=27% Similarity=0.424 Sum_probs=71.5
Q ss_pred cEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeeccccccccCCc-c-hhccccCCEeecc
Q 043332 524 STLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRYCLRLRRVP-S-VAKLLALHYLDLE 600 (897)
Q Consensus 524 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~~L~l~ 600 (897)
+.+++++| .+..+|..+ .++|++|+|++|.++.+ |..+..+++|++|+|++| .++.+| . +.++++|++|+++
T Consensus 15 ~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCC-CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 45555555 455555543 25677777777777765 445677777777777776 455565 3 5777788888888
Q ss_pred CCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCC
Q 043332 601 ATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPT 632 (897)
Q Consensus 601 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~ 632 (897)
+|.++.+|.. +..+++|++|++++|.+...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888877765 7888888888888887665543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=3.5e-09 Score=101.75 Aligned_cols=103 Identities=26% Similarity=0.380 Sum_probs=68.9
Q ss_pred ccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcC-CcccccCcccceeeccccccccCCc-c-hhccccCCEeec
Q 043332 523 LSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVL-PSSVSDLTNLRSLLLRYCLRLRRVP-S-VAKLLALHYLDL 599 (897)
Q Consensus 523 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~-~~~l~~L~~L~l 599 (897)
.+++++++| .+..+|..+ .+.|++|+|++|.|+.+ |..+..+.+|++|+|++| .++.+| . +.++++|++|++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCC-CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 345555555 455555433 25667777777777765 445667777777777776 445555 2 577777888888
Q ss_pred cCCcCcccCcc-ccCCCCCCEEeCCCCCCCcC
Q 043332 600 EATRIEEVPEG-MEMLENLSYLYLYSLPLKKF 630 (897)
Q Consensus 600 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~ 630 (897)
++|.++.+|.. +..+++|++|++++|.+...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888777764 77888888888888876544
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=3.8e-08 Score=105.73 Aligned_cols=270 Identities=14% Similarity=0.087 Sum_probs=134.9
Q ss_pred ccccchhhHHHHHHHHHHhc-----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNE 213 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 213 (897)
..++|+ +..++.+..++. ......|.|+|++|+|||++|+.+++... .. .+++..+......++..
T Consensus 12 ~~~ig~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~---~~---~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 12 DEYIGQ--ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG---VN---LRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp TTCCSC--HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT---CC---EEEECTTTCCSHHHHHH-
T ss_pred HHhhCH--HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC---CC---EEEEeccccCChHHHHH-
Confidence 478998 556666666553 22346788999999999999999998752 12 33444433322222111
Q ss_pred HHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--ccccccc-------C-CCC----------CCCCcE
Q 043332 214 IAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGI-------P-EPS----------EENGCK 273 (897)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~-------~-~~~----------~~~gs~ 273 (897)
.+.. . ..+..+|++|++.... ....+.. . ... ...+..
T Consensus 83 ---~l~~-----------------~--~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 ---ILAN-----------------S--LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---HHTT-----------------T--CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---HHHH-----------------h--ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1110 0 1245688899987532 1111100 0 000 012356
Q ss_pred EEEEeCCchh-----hcccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhhhcC
Q 043332 274 LVITTRSLGV-----CRFMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASCMRG 348 (897)
Q Consensus 274 iivTTR~~~v-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~L~~ 348 (897)
+|.||..... ...+ ...+.+.+++.+|..+++...+..... .-..+....+++.++|.|..+..+...+..
T Consensus 141 ~i~~t~~~~~~~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRF-GIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEESCCSSCSCSTTTTC-SCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEeCCCcccCCHHHHhcc-cEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 7766664321 1222 123899999999999998877643221 112456788999999999888766544321
Q ss_pred ------CC--ChhHHHHHHHHHhhccccCCCchhhhhhhhhhhccCCCchhhHHHHHhhhcCCCCcccCHHHHH----HH
Q 043332 349 ------VD--EIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELI----DY 416 (897)
Q Consensus 349 ------~~--~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li----~~ 416 (897)
.. +.+....++..+..........+..+...+.-.|..-+ .....+-..++ +++..+. ++
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~-~~~~~~a~~lg-------i~~~tl~~~l~~~ 288 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGP-VGLATLATALS-------EDPGTLEEVHEPY 288 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSC-CCHHHHHHHTT-------SCHHHHHHHTHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCC-chHHHHHHHhC-------CCHHHHHHHHhHH
Confidence 11 12333333333211000000001112211111221111 11222222222 3333332 23
Q ss_pred HHHhCcchhhhhhhhHHhHHHHHHH-HHHHcccccc
Q 043332 417 WIAEGFIEEVKDVQAKNDRGHTILN-RLVNCCLLES 451 (897)
Q Consensus 417 w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~ 451 (897)
-+..|++.....+....+.|..|++ ++.+|+++|+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 4567888655555666788888887 8888888874
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.7e-08 Score=108.34 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=110.9
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
..++|+ +..++.+.+++..+..+.+.|+|++|+||||+|+.+++..... .....++++..++..+...+. +++..+
T Consensus 21 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i~-~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGN--KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGIDVVR-NQIKHF 96 (323)
T ss_dssp GGCCSC--THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSHHHHH-THHHHH
T ss_pred HHHHCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCCEEEecCccccChHHHH-HHHHHH
Confidence 478998 6778888888887765559999999999999999999985211 111123444444433332222 222211
Q ss_pred cCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCchh-hccc--ccceEe
Q 043332 219 NQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLGV-CRFM--DCKEIG 293 (897)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v-~~~~--~~~~~~ 293 (897)
..... .+..+++.++|+||++.. ...+.+...+.....++.+|+||+...- .... .+..+.
T Consensus 97 ~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 97 AQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred Hhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 10000 000345789999999763 2233333222222456788888876322 1111 122489
Q ss_pred ccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHH-HHHHH
Q 043332 294 VELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLA-IVTVA 343 (897)
Q Consensus 294 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla-l~~~~ 343 (897)
+.+++.++..+++...+..... .-..+.+..+++.++|.|.. +..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999887643221 11245677899999999954 44443
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=8.3e-09 Score=111.11 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=89.7
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCC-------C----------
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDI-------E---------- 559 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i-------~---------- 559 (897)
.+++.+.+.. .+..++...|.+|++|+.+.+.+| .+..++...|..+..+.++.+..+.. .
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 4666777766 677777777777777777777766 44455555555555555444433100 0
Q ss_pred ----------cCCcc---------------------------c-ccCcccceeeccccccccCCc--chhccccCCEeec
Q 043332 560 ----------VLPSS---------------------------V-SDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDL 599 (897)
Q Consensus 560 ----------~lp~~---------------------------i-~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l 599 (897)
.++.. + ..+.+|+.|+|++| .++.+| .|.++.+|+.|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEEC
Confidence 00000 0 02556666666654 345555 3666666666666
Q ss_pred cCCcCcccCcc-ccCCCCCC-EEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhhccccee
Q 043332 600 EATRIEEVPEG-MEMLENLS-YLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLSNRLDTF 670 (897)
Q Consensus 600 ~~~~l~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L 670 (897)
..+ ++.++.. |.++.+|+ .+++.. .++.++.+.|.++++|+.+++. .+.........+..+++ |+.+
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~-~n~i~~I~~~aF~~~~~-L~~l 326 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT-GDKITTLGDELFGNGVP-SKLI 326 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC-SSCCCEECTTTTCTTCC-CCEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC-CCccCccchhhhcCCcc-hhhh
Confidence 655 5555443 56666666 666655 5556665556666666666654 22222222233444444 5444
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=3e-08 Score=109.14 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=76.1
Q ss_pred cccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceeeccccccccCCc-
Q 043332 509 IKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLLLRYCLRLRRVP- 586 (897)
Q Consensus 509 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp- 586 (897)
++.++...|.+| +|+.+.+..+ +..++...|.++ +|+.+.+.+ .++.++ ..+.+|.+|+.++++.| .++.+|
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~ 197 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPA 197 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECT
T ss_pred cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEech
Confidence 445555555554 4666665543 455555555553 455665554 444443 23455566666666553 344444
Q ss_pred c-hhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecccCchhhhhcHHHHHhhh
Q 043332 587 S-VAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSFGREALRETVEEAARLS 664 (897)
Q Consensus 587 ~-~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 664 (897)
. |. ..+|+.+.+..+ +..++.. |.++.+|+.+.+..+ ++.++...|.+ ++|+.+.+. ++........+..+.
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF~~c~ 271 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP--NGVTNIASRAFYYCP 271 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE--TTCCEECTTTTTTCT
T ss_pred hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC--CCccEEChhHhhCCC
Confidence 2 33 355666555432 4444333 555555666665542 45555554544 455555554 222222223344555
Q ss_pred cccceeEEEec
Q 043332 665 NRLDTFEGHFS 675 (897)
Q Consensus 665 ~~L~~L~l~~~ 675 (897)
+ |+.+.+..+
T Consensus 272 ~-L~~l~l~~~ 281 (401)
T 4fdw_A 272 E-LAEVTTYGS 281 (401)
T ss_dssp T-CCEEEEESS
T ss_pred C-CCEEEeCCc
Confidence 5 665555443
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.69 E-value=3.6e-07 Score=95.67 Aligned_cols=169 Identities=10% Similarity=0.084 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHHHHh----cCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCC----CcEEEEEEeCCCCCHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNVVIWVTVSQPLDLIKLQ 211 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~ 211 (897)
.+.|| +++.+++...| .++..+.+.|+|++|+|||++|+.|+++....... --.++++.+..-.+...+.
T Consensus 21 ~L~~R--e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQ--VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 47888 77777776655 45667889999999999999999999987432211 1135667776777888899
Q ss_pred HHHHHHHcCCCCCChhHHHHHHHHHHHH--hccCeEEEEEcCCCccccccccccCC--CCCCCCc--EEEEEeCCchh--
Q 043332 212 NEIAAALNQSLPENEDEVRRAGRLSGML--KAKAKFVLILDDMWKEFRLEEVGIPE--PSEENGC--KLVITTRSLGV-- 283 (897)
Q Consensus 212 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~r~LlVlDdv~~~~~~~~~~~~~--~~~~~gs--~iivTTR~~~v-- 283 (897)
..|++++................+...+ ..+++++++||+++.-..-+.+...+ +. ...+ -||.++...+.
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~-~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS-SKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH-CSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc-ccCCcEEEEEEecCcccch
Confidence 9999999643211111223334444443 23568999999997643111111000 00 1122 33334443221
Q ss_pred -------hcccccceEeccCCCHHHHHHHHHHhhh
Q 043332 284 -------CRFMDCKEIGVELLSQEEALNLFLDKVR 311 (897)
Q Consensus 284 -------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 311 (897)
...++...+.+.+++.+|-.+++..++.
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1233334489999999999999988764
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=6.1e-08 Score=104.19 Aligned_cols=185 Identities=11% Similarity=0.128 Sum_probs=109.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
..++|+ ++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ..-...+.+..++..+...+...+. .+
T Consensus 25 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 100 (327)
T 1iqp_A 25 DDIVGQ--EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVK-EF 100 (327)
T ss_dssp TTCCSC--HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTHHHHH-HH
T ss_pred HHhhCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHHHHHH-HH
Confidence 468998 7788888888877766669999999999999999999985211 1001233344333211111111110 00
Q ss_pred cCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCchh-hccc--ccceEe
Q 043332 219 NQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLGV-CRFM--DCKEIG 293 (897)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v-~~~~--~~~~~~ 293 (897)
... ..+..+++.++|+||++.. .....+...+.....++++|+||+...- .... .+..+.
T Consensus 101 ~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 101 ART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred Hhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 000 0011256789999999763 2233332222222456788888876432 1111 122389
Q ss_pred ccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHHhh
Q 043332 294 VELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVASC 345 (897)
Q Consensus 294 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~~~ 345 (897)
+.+++.++...++...+...... -..+....|++.++|.|..+..+...
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999998776433211 12456778999999999876554433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4.8e-08 Score=105.99 Aligned_cols=98 Identities=21% Similarity=0.188 Sum_probs=44.9
Q ss_pred EccCCCCcccCChhHhhCCCCccEEEecC-CCCCcCC-cccccCcccceeeccccccccCCc--chhccccCCEeeccCC
Q 043332 527 LLQANGNLWTIPECFFVHMHGLKVLNLSH-TDIEVLP-SSVSDLTNLRSLLLRYCLRLRRVP--SVAKLLALHYLDLEAT 602 (897)
Q Consensus 527 ~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp--~~~~l~~L~~L~l~~~ 602 (897)
+++++..+..+|. +..+++|++|+|++ |.++.+| ..++.|.+|++|+|++|. ++.+| .|.+|++|++|+|++|
T Consensus 14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 4443323444554 34555555555553 5555444 234455555555555542 22222 2455555555555555
Q ss_pred cCcccCccccCCCCCCEEeCCCCCC
Q 043332 603 RIEEVPEGMEMLENLSYLYLYSLPL 627 (897)
Q Consensus 603 ~l~~lp~~~~~l~~L~~L~l~~~~~ 627 (897)
.+..+|..+.....|+.|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 5554444322222255555544443
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=7.7e-08 Score=104.40 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=51.6
Q ss_pred EEcccc-ccccCCCCCCCCCCCccEEEccC-CCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceeeccc
Q 043332 502 VSLMKN-NIKEIPSYMSPHCDILSTLLLQA-NGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLLLRY 578 (897)
Q Consensus 502 l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~ 578 (897)
++.+++ .+..+|. +..+++|+.|+|++ | .+..++...|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 344444 5555554 34555556666654 4 5555555555555566666666655554432 345555666666655
Q ss_pred cccccCCc-c-hhccccCCEeeccCCcCc
Q 043332 579 CLRLRRVP-S-VAKLLALHYLDLEATRIE 605 (897)
Q Consensus 579 ~~~~~~lp-~-~~~l~~L~~L~l~~~~l~ 605 (897)
| .++.+| . +..+. |++|++.+|.+.
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4 334444 2 33333 555665555443
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=5.2e-09 Score=114.14 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=105.5
Q ss_pred ccccEEEccccccccCCC-----CCCCCCCCccEEEccCCCCcccC-ChhHhhCCCCccEEEecCCCCCcCC-ccc----
Q 043332 497 ENLERVSLMKNNIKEIPS-----YMSPHCDILSTLLLQANGNLWTI-PECFFVHMHGLKVLNLSHTDIEVLP-SSV---- 565 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i---- 565 (897)
..++.|++++|.+..... .....+++|++|++++| .+... ...++..+++|++|+|++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467888888887664221 12223468889999888 34322 2233345667888999988886321 222
Q ss_pred -ccCcccceeeccccccccC-----Cc-chhccccCCEeeccCCcCcc-----cCccccCCCCCCEEeCCCCCCCcCCCC
Q 043332 566 -SDLTNLRSLLLRYCLRLRR-----VP-SVAKLLALHYLDLEATRIEE-----VPEGMEMLENLSYLYLYSLPLKKFPTG 633 (897)
Q Consensus 566 -~~l~~L~~L~L~~~~~~~~-----lp-~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~ 633 (897)
...++|++|+|++|. ++. ++ .+..+++|++|++++|.+.. ++..+...++|++|++++|.++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 245778888888874 433 23 34667888888888887763 345567777888888888887653211
Q ss_pred ----cccCCcccCeEecccCchhhhhcHHHHHhhhc
Q 043332 634 ----ILPRLRDLYKLKLSFGREALRETVEEAARLSN 665 (897)
Q Consensus 634 ----~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 665 (897)
.+...++|++|+++ ++.....++..+..+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls-~N~i~~~g~~~L~~~~~ 264 (372)
T 3un9_A 230 ALARAAREHPSLELLHLY-FNELSSEGRQVLRDLGG 264 (372)
T ss_dssp HHHHHHHHCSSCCEEECT-TSSCCHHHHHHHHHCC-
T ss_pred HHHHHHHhCCCCCEEecc-CCCCCHHHHHHHHHHhc
Confidence 13455778888887 45555556666655533
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=1.8e-07 Score=103.00 Aligned_cols=170 Identities=13% Similarity=0.157 Sum_probs=99.9
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCcccccCcccceeec
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLL 576 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L 576 (897)
.+++.+.+.+|.+..++...|. +.+|+.+.+..+ +..++...|.++++|+.+++..+ ++.++.....-.+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe
Confidence 4566666666666666666664 466666666643 56666666677777777777653 4555443222256666666
Q ss_pred cccccccCCc--chhccccCCEeeccCCcCc-----ccCc-cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEeccc
Q 043332 577 RYCLRLRRVP--SVAKLLALHYLDLEATRIE-----EVPE-GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLSF 648 (897)
Q Consensus 577 ~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~-----~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 648 (897)
.. .++.++ .|.++.+|+.+++.++.+. .++. .|..+.+|+.+.+. +.+..++...|.++++|+.+.+.
T Consensus 256 p~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp- 331 (401)
T 4fdw_A 256 PN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP- 331 (401)
T ss_dssp ET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC-
T ss_pred CC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC-
Confidence 43 355555 4677777777777665443 3433 36666777777776 34666666666777777777665
Q ss_pred CchhhhhcHHHHHhhhcccceeEEEeccc
Q 043332 649 GREALRETVEEAARLSNRLDTFEGHFSTL 677 (897)
Q Consensus 649 ~~~~~~~~~~~l~~l~~~L~~L~l~~~~l 677 (897)
.+........+..+ + |+.+.+..+..
T Consensus 332 -~~l~~I~~~aF~~~-~-L~~l~l~~n~~ 357 (401)
T 4fdw_A 332 -ANVTQINFSAFNNT-G-IKEVKVEGTTP 357 (401)
T ss_dssp -TTCCEECTTSSSSS-C-CCEEEECCSSC
T ss_pred -ccccEEcHHhCCCC-C-CCEEEEcCCCC
Confidence 22222222334444 5 66666655543
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=1.1e-08 Score=111.67 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=111.5
Q ss_pred CCCccEEEccCCCCcccCChhHhh-----CCCCccEEEecCCCCCc--CCcccccCcccceeeccccccccCCc--ch--
Q 043332 520 CDILSTLLLQANGNLWTIPECFFV-----HMHGLKVLNLSHTDIEV--LPSSVSDLTNLRSLLLRYCLRLRRVP--SV-- 588 (897)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~~-----~l~~Lr~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp--~~-- 588 (897)
.++|+.|++++| .+.......+. ..++|++|+|++|.++. +..-...+.+|++|+|++| .++..+ .+
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 467899999999 45443322222 33799999999999873 2222345778999999998 444333 23
Q ss_pred ---hccccCCEeeccCCcCcc-----cCccccCCCCCCEEeCCCCCCCcCC----CCcccCCcccCeEecccCchhhhhc
Q 043332 589 ---AKLLALHYLDLEATRIEE-----VPEGMEMLENLSYLYLYSLPLKKFP----TGILPRLRDLYKLKLSFGREALRET 656 (897)
Q Consensus 589 ---~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~ 656 (897)
...++|++|++++|.+.. ++..+..+++|++|++++|.+.... ...+...++|++|+++ ++.....+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls-~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA-YNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC-SSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC-CCCCCHHH
Confidence 245789999999998864 5556788899999999999987532 1225677899999999 45555544
Q ss_pred HHH----HHhhhcccceeEEEeccchhh
Q 043332 657 VEE----AARLSNRLDTFEGHFSTLKDF 680 (897)
Q Consensus 657 ~~~----l~~l~~~L~~L~l~~~~l~~~ 680 (897)
... +...++ |+.|+++.|.+...
T Consensus 228 ~~~l~~~L~~~~~-L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 228 ALALARAAREHPS-LELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHCSS-CCEEECTTSSCCHH
T ss_pred HHHHHHHHHhCCC-CCEEeccCCCCCHH
Confidence 433 445577 99999999987653
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.51 E-value=7.9e-07 Score=95.06 Aligned_cols=180 Identities=10% Similarity=0.165 Sum_probs=108.4
Q ss_pred cccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCC-cEEEEEEeCCCCCHHHHHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF-NVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
..+++|+ +..++.+.+++..+..+.+.|+|++|+|||++|+.+++.... ..+ ...+.+..+.......+..
T Consensus 16 ~~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~---- 87 (319)
T 2chq_A 16 LDEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERGIDVVRH---- 87 (319)
T ss_dssp GGGSCSC--HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT--TCHHHHCEEEETTSTTCTTTSSH----
T ss_pred HHHHhCC--HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC--CcccCCeEEEeCccccChHHHHH----
Confidence 3478998 778888888887776656999999999999999999997521 111 1123344433211111100
Q ss_pred HHcCCCCCChhHHHHHHHHHHH--HhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCch-hhccc--cc
Q 043332 217 ALNQSLPENEDEVRRAGRLSGM--LKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLG-VCRFM--DC 289 (897)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~--l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~--~~ 289 (897)
........ +..+++.++|+|+++.. ...+.+...+.....++++|+||.... +.... .+
T Consensus 88 --------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 88 --------------KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp --------------HHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred --------------HHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 00011000 11245789999999763 223344433433345678888876543 21111 12
Q ss_pred ceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 290 KEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 290 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
..+.+.+++.++..+++...+..... .-..+....+++.++|.+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 24899999999999999877643321 112456678889999999765443
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=1.9e-06 Score=95.12 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=83.4
Q ss_pred ccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceeeccccccccCCc
Q 043332 508 NIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLLLRYCLRLRRVP 586 (897)
Q Consensus 508 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp 586 (897)
.++.+....|.+|.+|+.+.+.. .+..++...|.++.+|+.+++.++ ++.++. .+.++.+|+.+.+..+ +..++
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeec
Confidence 36677778888999999999975 477888888899999999998754 555543 4667778877776642 33333
Q ss_pred --chhccccCCEeeccCCcCcccC-ccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 587 --SVAKLLALHYLDLEATRIEEVP-EGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 587 --~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
.+.++..+....... +..+. ..+.++.+|+.+.+..+ +..++.+.+.++.+|+.+.+.
T Consensus 133 ~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcC
Confidence 344443333222211 12222 23566677777776543 455555666666777766664
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.37 E-value=1.1e-06 Score=86.00 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=84.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCcEEEEEEeCCCCCHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLDLIKLQNEI 214 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i 214 (897)
..++|| ++.++++.+++.....+.+.|+|++|+|||++|+.+++....... ....++++.++. +.
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 22 DPVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccc--hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 468999 778999999988776777899999999999999999998632110 112344443211 11
Q ss_pred HHHHcCCCCCChhHHHHHHHHHHHHh-ccCeEEEEEcCCCccc---------cccccccCCCCCCCCcEEEEEeCCchhh
Q 043332 215 AAALNQSLPENEDEVRRAGRLSGMLK-AKAKFVLILDDMWKEF---------RLEEVGIPEPSEENGCKLVITTRSLGVC 284 (897)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~r~LlVlDdv~~~~---------~~~~~~~~~~~~~~gs~iivTTR~~~v~ 284 (897)
.. .............+...+. .+++.+||+||++... .+..+...+.. ..+..+|+||......
T Consensus 91 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 ----AG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYR 164 (195)
T ss_dssp ----TT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHH
T ss_pred ----cc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHH
Confidence 00 0001111222333333332 3567899999997642 11111111111 2344677777654421
Q ss_pred c-------ccc-cceEeccCCCHHHHHHHH
Q 043332 285 R-------FMD-CKEIGVELLSQEEALNLF 306 (897)
Q Consensus 285 ~-------~~~-~~~~~l~~L~~~ea~~Lf 306 (897)
. ... ...+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1 111 113788888888876654
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.35 E-value=2.6e-06 Score=93.25 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=105.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++|+ +..++.+..++..+. ...+.|+|+.|+||||+|+.+++..... ..+. ...+........+...
T Consensus 16 ~~~vg~--~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~-~~~~-------~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT-------ATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTSCSC--HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT-TCSC-------SSCCSSSHHHHHHHTS
T ss_pred hhccCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCC-------CCCCcccHHHHHHhcc
Confidence 368998 777888888876554 4678999999999999999999876321 1100 0000000000111000
Q ss_pred HcCCC----CCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCch-hhcc
Q 043332 218 LNQSL----PENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLG-VCRF 286 (897)
Q Consensus 218 l~~~~----~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~ 286 (897)
-.... .........+..+...+. .+++.++|+||++.. ...+.+...+.....+..+|++|.... +...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 00000 000000011122223222 245789999999753 222333222222234567777776432 2111
Q ss_pred c--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHH
Q 043332 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 287 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~ 343 (897)
. .+..+.+.+++.++..+++...+..... ....+.+..|++.++|.|..+..+.
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 2233899999999999999876643211 1124557789999999998776554
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=2.9e-06 Score=92.03 Aligned_cols=192 Identities=10% Similarity=0.131 Sum_probs=107.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhc-cCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE-TNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++|+ ++.++.+..++.....+.+.|+|++|+||||+|+.+++..... ...+ .+..+..++......+...+...
T Consensus 37 ~~i~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQ--DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp TTCCSC--CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHH
T ss_pred HHhhCC--HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHH
Confidence 468998 5677888888887755558999999999999999999885211 0111 13334444433333332222111
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEEeCCch-hhccc--ccceE
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVITTRSLG-VCRFM--DCKEI 292 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~--~~~~~ 292 (897)
........... .......+++-+|++|++.... ....+...+.......++|++|.... +.... .+..+
T Consensus 114 ~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 114 ARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11111100000 0001112345699999986532 12222222211233567777775432 21111 12238
Q ss_pred eccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 293 GVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 293 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
.+.+++.++....+...+..... .-..+....|++.++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999877643221 112456788999999999875443
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.24 E-value=3.8e-05 Score=79.67 Aligned_cols=177 Identities=13% Similarity=0.132 Sum_probs=91.5
Q ss_pred CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHH
Q 043332 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGM 238 (897)
Q Consensus 159 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 238 (897)
....+.+.|+|++|+|||++|+.+++... ..| +.+..+... .+ ............+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~~---~~i~~~~~~------------~g---~~~~~~~~~~~~~~~~ 119 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN---FPF---IKICSPDKM------------IG---FSETAKCQAMKKIFDD 119 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT---CSE---EEEECGGGC------------TT---CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEeCHHHh------------cC---CchHHHHHHHHHHHHH
Confidence 44567899999999999999999999751 222 222222110 00 0001111222333333
Q ss_pred HhccCeEEEEEcCCCcc------------ccccccccCCC---CCCCCcEEEEEeCCchhhcc---cc--cceEeccCCC
Q 043332 239 LKAKAKFVLILDDMWKE------------FRLEEVGIPEP---SEENGCKLVITTRSLGVCRF---MD--CKEIGVELLS 298 (897)
Q Consensus 239 l~~~~r~LlVlDdv~~~------------~~~~~~~~~~~---~~~~gs~iivTTR~~~v~~~---~~--~~~~~l~~L~ 298 (897)
....+..+|++||++.. ..++.+...+. ..+....||.||...+.... .. ...+.+++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 33456889999998642 01111211111 12233446667776533211 11 1228889998
Q ss_pred H-HHHHHHHHHhhhccccccchhhHHHHHHHHHHhCC------ChHHHHHHHhhhcCCCChhHHHHHHHHHhhc
Q 043332 299 Q-EEALNLFLDKVRISTSQILNLDKEIINSVVEECAG------LPLAIVTVASCMRGVDEIHEWRNALNELRGL 365 (897)
Q Consensus 299 ~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G------~Plal~~~~~~L~~~~~~~~w~~~l~~l~~~ 365 (897)
. ++...++.+... . ..+....+++.+.| +.-++..+-.+.. ......+..+++.+...
T Consensus 200 ~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 200 TGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp EHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHHHHHc
Confidence 7 666666554211 1 13456778888887 3344443333322 23345677666665443
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=1.6e-05 Score=88.44 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=104.8
Q ss_pred ccc-chhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 140 TLA-GEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 140 ~~v-Gr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+| |.........+........ ...+.|+|++|+||||||+.+++........ ..+++++.. .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHH------HHHHHHHHH
Confidence 455 7543444555555554433 6789999999999999999999986322111 234555433 334444444
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc----ccccccCCCC-CCCCcEEEEEeCCch---------h
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR----LEEVGIPEPS-EENGCKLVITTRSLG---------V 283 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----~~~~~~~~~~-~~~gs~iivTTR~~~---------v 283 (897)
+.... ...+...+ ..+.-+|++||++.... .+.+...+.. ...|..||+||.... +
T Consensus 179 ~~~~~---------~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 179 MKEGK---------LNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHTTC---------HHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHccc---------HHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 43211 11122222 22466999999975321 1222211110 135678999887632 1
Q ss_pred hcccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 284 CRFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 284 ~~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
..++.... +.+++++.++-.+++.+.+.......+ .++...|++.++|.+..+..
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 22232223 889999999999999887653221112 34567788899998865543
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.15 E-value=9.6e-07 Score=90.05 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=100.5
Q ss_pred cccchh-hHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Q 043332 140 TLAGEK-TKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAAL 218 (897)
Q Consensus 140 ~~vGr~-~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 218 (897)
+++|.+ .+..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|+.+++..+. +
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~------~---- 95 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI------S---- 95 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS------C----
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH------H----
Confidence 567631 24566677666666567889999999999999999999987322 234566765432110 0
Q ss_pred cCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc----ccccccCCCC-CCCC-cEEEEEeCCchh---------
Q 043332 219 NQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR----LEEVGIPEPS-EENG-CKLVITTRSLGV--------- 283 (897)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----~~~~~~~~~~-~~~g-s~iivTTR~~~v--------- 283 (897)
. ...+.+ .++.+||+||++.... .+.+...+.. ...+ .++|+||+...-
T Consensus 96 -------~-------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 96 -------T-------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp -------G-------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred -------H-------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 0 000111 2356899999975321 1112111100 0122 247887774321
Q ss_pred hccccc-ceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHH
Q 043332 284 CRFMDC-KEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 284 ~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~ 343 (897)
...+.. ..+.+.+++.++..+++...+..... .-..+....+++.++|.+..+..+.
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 111111 23899999999999999887643221 1124567788999999887665443
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.15 E-value=8.7e-06 Score=85.30 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=97.3
Q ss_pred cccccchhhHHHHHHHHHHhcC-------------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLMG-------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
..+++|. ++.++++.+.+.. ...+-+.|+|++|+|||++|+++++... .. .+.+..+.-
T Consensus 16 ~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~---~~---~~~v~~~~~ 87 (285)
T 3h4m_A 16 YEDIGGL--EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN---AT---FIRVVGSEL 87 (285)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT---CE---EEEEEGGGG
T ss_pred HHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CC---EEEEehHHH
Confidence 3478998 6667777666532 2356789999999999999999998752 11 233332221
Q ss_pred CCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------------cccccccCCC--
Q 043332 205 LDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------------RLEEVGIPEP-- 266 (897)
Q Consensus 205 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------------~~~~~~~~~~-- 266 (897)
.. .. ..........+........+.+|+|||++... .+..+...+.
T Consensus 88 ~~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VK--------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CC--------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HH--------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 10 00 11122233334444444567899999996421 0111111110
Q ss_pred CCCCCcEEEEEeCCchhhc-----ccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCC-ChHHH
Q 043332 267 SEENGCKLVITTRSLGVCR-----FMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAG-LPLAI 339 (897)
Q Consensus 267 ~~~~gs~iivTTR~~~v~~-----~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plal 339 (897)
....+..||.||....... ...... +.++..+.++..+++...+.......... ...+++.+.| .|-.+
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHH
Confidence 1233566777777543221 111222 88999999999999987765432211111 3556777776 45344
Q ss_pred HH
Q 043332 340 VT 341 (897)
Q Consensus 340 ~~ 341 (897)
..
T Consensus 228 ~~ 229 (285)
T 3h4m_A 228 KA 229 (285)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.3e-05 Score=91.23 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=103.1
Q ss_pred ccccchhhHHHHHHHHHHhcC-----------------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe
Q 043332 139 ATLAGEKTKKVVERIWEDLMG-----------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 201 (897)
.+++|+ +..++++.+++.. ...+.+.|+|++|+||||+|+.+++.. .+ .++.+..
T Consensus 39 ~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~ 110 (516)
T 1sxj_A 39 QQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNA 110 (516)
T ss_dssp GGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECT
T ss_pred HHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeC
Confidence 479998 7788888888864 134789999999999999999999975 12 2445555
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc-----ccccccCCCCCCCCcEEEE
Q 043332 202 SQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR-----LEEVGIPEPSEENGCKLVI 276 (897)
Q Consensus 202 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-----~~~~~~~~~~~~~gs~iiv 276 (897)
+.......+ ...+........ .......... .....+++.+||+|+++.... +..+...+. ..+..||+
T Consensus 111 s~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKTLL-NAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLIL 184 (516)
T ss_dssp TSCCCHHHH-HHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEE
T ss_pred CCcchHHHH-HHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEE
Confidence 554443322 222111111000 0000000000 001135678999999975321 112211111 12334666
Q ss_pred EeCCch---hhcccc-cceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHH-HHHH
Q 043332 277 TTRSLG---VCRFMD-CKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLA-IVTV 342 (897)
Q Consensus 277 TTR~~~---v~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla-l~~~ 342 (897)
++.... +..... +..+.+.+++.++..+.+...+........ .+....|++.++|.+.. +..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 555422 222111 223899999999999998876643322112 24567789999996544 4443
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.10 E-value=3.4e-05 Score=85.57 Aligned_cols=175 Identities=14% Similarity=0.164 Sum_probs=99.7
Q ss_pred ccccchhhHHHH---HHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 139 ATLAGEKTKKVV---ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 139 ~~~vGr~~~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
..++|+ +..+ ..+...+.....+.+.|+|++|+||||+|+.+++... ..| ..+.... .....+.. ++
T Consensus 26 ~~ivGq--~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~---~~f---~~l~a~~-~~~~~ir~-~~ 95 (447)
T 3pvs_A 26 AQYIGQ--QHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN---ADV---ERISAVT-SGVKEIRE-AI 95 (447)
T ss_dssp TTCCSC--HHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT---CEE---EEEETTT-CCHHHHHH-HH
T ss_pred HHhCCc--HHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC---CCe---EEEEecc-CCHHHHHH-HH
Confidence 368997 5555 5666777777778899999999999999999999752 222 1222211 22222211 11
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEE-EeCCch--hhcc--cc
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVI-TTRSLG--VCRF--MD 288 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iiv-TTR~~~--v~~~--~~ 288 (897)
.........+++.+|++|++... ...+.+...+.. ....+|. ||.+.. +... ..
T Consensus 96 -----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 96 -----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp -----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred -----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCc
Confidence 11111112356789999999763 223333333321 2234444 444432 1111 11
Q ss_pred cceEeccCCCHHHHHHHHHHhhhcccc----ccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 289 CKEIGVELLSQEEALNLFLDKVRISTS----QILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 289 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+..+.+.+++.++...++.+.+..... ....-..+....+++.++|.+..+..+
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 223889999999999999887643110 011123556778888899998766544
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=2e-06 Score=81.16 Aligned_cols=39 Identities=8% Similarity=0.013 Sum_probs=16.9
Q ss_pred ccceeecccCcccccccCCCCcccCCCccEEEecCCCCCc
Q 043332 837 RLKRLGFYFLPEFKSFCSNNGVLVCNSLQEIEVRGCPKLK 876 (897)
Q Consensus 837 ~L~~L~L~~~~~L~~~~~~~~~~~~p~L~~L~i~~C~~L~ 876 (897)
+|++|+|++|++++.-... ....+|+|++|++++|++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCC
Confidence 4455555555444432220 11124455555555555444
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.05 E-value=3.6e-05 Score=84.71 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=101.9
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCC-cccccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLP-SSVSDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~ 575 (897)
.+++.+.+. +.++.+....|.+|.+|+.+.+..+ +..++...|.++..|+.+.+..+ +..+. ..+.++..+....
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence 468888886 4588888899999999999999764 77888888999999998877654 33333 3344554443333
Q ss_pred ccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 576 LRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 576 L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
... ...++ .|.++.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ ++.++...+.++..|+.+.+.
T Consensus 147 ~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 147 PEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred Ccc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 332 33344 5888899999998754 4445543 777888999888665 677777778888888887765
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=2e-05 Score=85.41 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=101.4
Q ss_pred ccccchhhHHHHHHHHHHh-cCCCeeEEEEEcCCCchHHHHHHHHHHHHhhc-cC--CCcE-------------------
Q 043332 139 ATLAGEKTKKVVERIWEDL-MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE-TN--KFNV------------------- 195 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--~f~~------------------- 195 (897)
.+++|+ +..++.+..++ ..+..+.+.|+|+.|+||||+|+.+++..... .+ .++.
T Consensus 14 ~~~vg~--~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHN--EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSC--HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCC--HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 478998 67788888888 66554449999999999999999999864111 00 0000
Q ss_pred -EEEEEeCCCC-CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCCCCCCCC
Q 043332 196 -VIWVTVSQPL-DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPEPSEENG 271 (897)
Q Consensus 196 -~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~g 271 (897)
.+.+..+... ......++++..+.....-. .. . .+. .+ .+++-++|+|++.... ....+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~---~-~ls-~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-FQ---D-SKD-GL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccc-cc---c-ccc-cc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 1111111100 00001222222221111000 00 0 000 01 2346699999997631 112222111111345
Q ss_pred cEEEEEeCCc-hhhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHHH
Q 043332 272 CKLVITTRSL-GVCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTVA 343 (897)
Q Consensus 272 s~iivTTR~~-~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~~ 343 (897)
+.+|++|... .+.... .+..+.+.+++.++..+.+...+........ ..+.+..|++.++|.+..+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 6788777653 222111 2233899999999999999887643321111 02456788999999997665543
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.03 E-value=1.4e-05 Score=84.80 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=71.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK 240 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (897)
....+.|+|++|+|||++|+.+++..... ......-++.++.. .+...... ........+....
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~------------~l~~~~~g--~~~~~~~~~~~~~- 129 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVTRD------------DLVGQYIG--HTAPKTKEVLKRA- 129 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEECGG------------GTCCSSTT--CHHHHHHHHHHHH-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEcHH------------Hhhhhccc--ccHHHHHHHHHhc-
Confidence 34578999999999999999999886321 22111112333211 01111111 1111222222222
Q ss_pred ccCeEEEEEcCCCcc-----------ccccccccCCCCCCCCcEEEEEeCCch----------hhcccccceEeccCCCH
Q 043332 241 AKAKFVLILDDMWKE-----------FRLEEVGIPEPSEENGCKLVITTRSLG----------VCRFMDCKEIGVELLSQ 299 (897)
Q Consensus 241 ~~~r~LlVlDdv~~~-----------~~~~~~~~~~~~~~~gs~iivTTR~~~----------v~~~~~~~~~~l~~L~~ 299 (897)
+..+|++|+++.. .....+...+.....+..||+||.... +..++. ..+.+++++.
T Consensus 130 --~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~ 206 (309)
T 3syl_A 130 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSD 206 (309)
T ss_dssp --TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCH
T ss_pred --CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCH
Confidence 2459999999732 112222222222234567888876432 222221 2389999999
Q ss_pred HHHHHHHHHhhhc
Q 043332 300 EEALNLFLDKVRI 312 (897)
Q Consensus 300 ~ea~~Lf~~~~~~ 312 (897)
++-..++...+..
T Consensus 207 ~~~~~il~~~l~~ 219 (309)
T 3syl_A 207 EELFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.01 E-value=0.00027 Score=72.70 Aligned_cols=177 Identities=14% Similarity=0.133 Sum_probs=92.5
Q ss_pred ccccchhhHHHHHHH---HHHhcC---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 139 ATLAGEKTKKVVERI---WEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l---~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
.+++|. +..++.+ +.++.. ...+-|.|+|++|+|||++|+.+++... .. .+.+..+.-.+
T Consensus 6 ~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~---~~---~~~~~~~~~~~ 77 (262)
T 2qz4_A 6 KDVAGM--HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ---VP---FLAMAGAEFVE 77 (262)
T ss_dssp TSSCSC--HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CC---EEEEETTTTSS
T ss_pred HHhCCH--HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---EEEechHHHHh
Confidence 468887 3344444 444432 1235688999999999999999999762 22 34444443211
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc-------------c----ccccccCCC--C
Q 043332 207 LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF-------------R----LEEVGIPEP--S 267 (897)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-------------~----~~~~~~~~~--~ 267 (897)
.. ..........+........+.+|++|+++... . +..+...+. .
T Consensus 78 --------------~~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 --------------VI--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp --------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred --------------hc--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 00 01112223333333334457899999997531 0 111111111 1
Q ss_pred CCCCcEEEEEeCCchhh-cc-c---ccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHH
Q 043332 268 EENGCKLVITTRSLGVC-RF-M---DCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIV 340 (897)
Q Consensus 268 ~~~gs~iivTTR~~~v~-~~-~---~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~ 340 (897)
...+..||.||...... .. . .... +.++..+.++-.+++...+..... ..........+++.+.|.+- .+.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHH
Confidence 12345666677654321 11 1 1112 788899999999999876643221 11112234678888888754 443
Q ss_pred H
Q 043332 341 T 341 (897)
Q Consensus 341 ~ 341 (897)
.
T Consensus 220 ~ 220 (262)
T 2qz4_A 220 N 220 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.01 E-value=0.00013 Score=78.76 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=98.1
Q ss_pred cccccchhhHHHHHHHHHHhc------------CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
..+++|. +..++.+.+.+. ....+.|.|+|++|+|||++|+++++... . ..+.+..+.-.
T Consensus 83 ~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~---~~~~i~~~~l~ 154 (357)
T 3d8b_A 83 WEDIAGV--EFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG---A---TFFSISASSLT 154 (357)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT---C---EEEEEEGGGGC
T ss_pred HHHhCCh--HHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC---C---eEEEEehHHhh
Confidence 3478998 566666666552 12356789999999999999999998751 1 23445443221
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc-------------cccccccCCC----CC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF-------------RLEEVGIPEP----SE 268 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-------------~~~~~~~~~~----~~ 268 (897)
. .. ..........+.......++.+|+||+++... ....+...+. ..
T Consensus 155 ~--------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 155 S--------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp C--------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred c--------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 1 00 01112223333333334567899999995320 0111111111 11
Q ss_pred CCCcEEEEEeCCch-hhcc--cccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCC-ChHHHHHHH
Q 043332 269 ENGCKLVITTRSLG-VCRF--MDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAG-LPLAIVTVA 343 (897)
Q Consensus 269 ~~gs~iivTTR~~~-v~~~--~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~Plal~~~~ 343 (897)
..+..||.||.... +... -.... +.+...+.++..+++...+..... .-..+....|++.+.| .+-.+..+.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23445565665432 2111 11222 778888899988888776643211 1113456778888888 455555443
No 182
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=4e-06 Score=79.15 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=63.6
Q ss_pred cccceeEEeccCCcccccccCcccCCccccccccccccEEEEecCCCCCCCChhhhhhcc----CCccEEEEeccccchh
Q 043332 736 EDVQFLQMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVRCPNLKNLFSLQLLPAL----QNLEVLEVKVCFSIEE 811 (897)
Q Consensus 736 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L----~~L~~L~l~~c~~l~~ 811 (897)
-.|++|++++|. +++ .++..+..++ +|++|+|++|..+++- .+..+..+ ++|++|+|++|+++++
T Consensus 61 ~~L~~LDLs~~~-Itd--------~GL~~L~~~~-~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS--------IGFDHMEGLQ-YVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCG--------GGGGGGTTCS-CCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccH--------HHHHHhcCCC-CCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 368888888886 442 3355566777 9999999999888773 22233332 4789999999988775
Q ss_pred hcccccchhhhhhhccccccccccCccceeecccCcccccc
Q 043332 812 IVVVEDEETEKELATNTIINTVTLPRLKRLGFYFLPEFKSF 852 (897)
Q Consensus 812 i~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~L~~~~~L~~~ 852 (897)
--.. ....+|+|+.|+|++||.++..
T Consensus 130 ~Gl~---------------~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 130 KGII---------------ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHH---------------HGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHH---------------HHhcCCCCCEEECCCCCCCCch
Confidence 3110 1225899999999999988864
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.00 E-value=9.4e-05 Score=79.47 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=96.2
Q ss_pred cccccchhhHHHHHHHHHHhc-----CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHH
Q 043332 138 TATLAGEKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQN 212 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 212 (897)
...++|+ +..++.+..++. ....+.|.|+|++|+|||++|+.+++... ..| +.+..+.......+
T Consensus 28 ~~~iiG~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~~-- 97 (338)
T 3pfi_A 28 FDGYIGQ--ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS---ANI---KTTAAPMIEKSGDL-- 97 (338)
T ss_dssp GGGCCSC--HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT---CCE---EEEEGGGCCSHHHH--
T ss_pred HHHhCCh--HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC---CCe---EEecchhccchhHH--
Confidence 3479998 666666666664 23456789999999999999999988751 222 23333221111111
Q ss_pred HHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--cccccccCC------------------CCCCCCc
Q 043332 213 EIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--RLEEVGIPE------------------PSEENGC 272 (897)
Q Consensus 213 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--~~~~~~~~~------------------~~~~~gs 272 (897)
...... ..+..+|+||++.... ....+...+ ....++.
T Consensus 98 --------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 --------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111111 1345688999987531 111110000 0001134
Q ss_pred EEEEEeCCchh-----hcccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 273 KLVITTRSLGV-----CRFMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 273 ~iivTTR~~~v-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
.+|.||..... ..++ ...+.+.+++.++...++...+..... ....+....+++.+.|.|-.+..+
T Consensus 156 ~~i~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 66666665322 2221 123899999999999999877653221 112456777888999999655544
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.00 E-value=6.6e-05 Score=81.79 Aligned_cols=193 Identities=10% Similarity=0.081 Sum_probs=98.8
Q ss_pred ccccchhhH-HHHHHHHHHhcCCCe--eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe----CCCCCHHHHH
Q 043332 139 ATLAGEKTK-KVVERIWEDLMGDKV--TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV----SQPLDLIKLQ 211 (897)
Q Consensus 139 ~~~vGr~~~-~~~~~l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----s~~~~~~~~~ 211 (897)
..++|++.. +.+..+.+.+..... +.+.|+|++|+|||++|+.+++... ....| +.+.. +......+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCc---ccccchhhhhcccchhHHH
Confidence 479998321 223445566655543 5899999999999999999999872 11122 22221 2223333444
Q ss_pred HHHHHHH-cCC---------------------------CCC-----ChhHHHHHHHHHHH-HhccC----eEEEEEcCCC
Q 043332 212 NEIAAAL-NQS---------------------------LPE-----NEDEVRRAGRLSGM-LKAKA----KFVLILDDMW 253 (897)
Q Consensus 212 ~~i~~~l-~~~---------------------------~~~-----~~~~~~~~~~l~~~-l~~~~----r~LlVlDdv~ 253 (897)
.+..... +.. ... .............. ...++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333321 100 000 11111111122111 11233 3499999997
Q ss_pred ccc--cccccccCCCCCCCCcEEEEEeCC-----------------chhhcccccceEeccCCCHHHHHHHHHHhhhccc
Q 043332 254 KEF--RLEEVGIPEPSEENGCKLVITTRS-----------------LGVCRFMDCKEIGVELLSQEEALNLFLDKVRIST 314 (897)
Q Consensus 254 ~~~--~~~~~~~~~~~~~~gs~iivTTR~-----------------~~v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 314 (897)
... ....+...+..... ..++++|.. ..+..++ ..+.+.+++.++..+++...+....
T Consensus 200 ~l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL--LIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTE--EEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhc--cEEEecCCCHHHHHHHHHHHHHHcC
Confidence 631 12222222221112 234444431 1112222 2289999999999999987765432
Q ss_pred cccchhhHHHHHHHHHHhC-CChHHHHH
Q 043332 315 SQILNLDKEIINSVVEECA-GLPLAIVT 341 (897)
Q Consensus 315 ~~~~~~~~~~~~~i~~~c~-G~Plal~~ 341 (897)
. .-..+....|++.+. |.|..+..
T Consensus 277 ~---~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 277 V---EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp C---CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred C---CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 1 122456777888887 87765543
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.98 E-value=7.2e-05 Score=79.87 Aligned_cols=175 Identities=13% Similarity=0.129 Sum_probs=98.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
.+++|+ +..++.+.+++.... ..++.+.|++|+|||++|+.+++... ..++.+..+.. ....+...+ ..
T Consensus 26 ~~ivg~--~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~~i~~~~-~~ 95 (324)
T 3u61_B 26 DECILP--AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KIDFVRGPL-TN 95 (324)
T ss_dssp TTSCCC--HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHHHHHTHH-HH
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHHHHHHHH-HH
Confidence 478998 677888888887665 46778888899999999999998751 22445554442 222222211 11
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---cccccccCCCCCCCCcEEEEEeCCch-hhccc--ccce
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---RLEEVGIPEPSEENGCKLVITTRSLG-VCRFM--DCKE 291 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~~--~~~~ 291 (897)
...... ..+++.+||+||++... ..+.+...+.....+.++|+||.... +.... .+..
T Consensus 96 ~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 96 FASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 100000 02357899999997643 22222221111124567888887543 11111 1223
Q ss_pred EeccCCCHHHHHHHHHHh-------hhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 292 IGVELLSQEEALNLFLDK-------VRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 292 ~~l~~L~~~ea~~Lf~~~-------~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
+.+++++.++-.+++... +........ ..+....+++.++|.+..+..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA--DMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS--CHHHHHHHHHHTCSCTTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHhCCCCHHHHHH
Confidence 899999988854443322 221111011 126677888999888765433
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.94 E-value=9e-05 Score=79.25 Aligned_cols=165 Identities=10% Similarity=0.114 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEcCCCchHHHHHHHHHHHHhhcc-------------------CCCcEEEEEEeC---C
Q 043332 147 KKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIWVTVS---Q 203 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~vs---~ 203 (897)
++..+.+...+..+. ...+.++|+.|+|||++|+.+++...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455677777777665 46799999999999999999998763211 1122 2233221 1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHh----ccCeEEEEEcCCCccc--cccccccCCCCCCCCcEEEEE
Q 043332 204 PLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLK----AKAKFVLILDDMWKEF--RLEEVGIPEPSEENGCKLVIT 277 (897)
Q Consensus 204 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~r~LlVlDdv~~~~--~~~~~~~~~~~~~~gs~iivT 277 (897)
...+.. +..+.+.+. .+++-++|+|+++... ..+.+...+.....++.+|++
T Consensus 87 ~~~i~~----------------------ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 87 TLGVDA----------------------VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp SBCHHH----------------------HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred CCCHHH----------------------HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 122222 222333221 2456789999997632 222332222222346677777
Q ss_pred eCCch-hhccc--ccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 278 TRSLG-VCRFM--DCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 278 TR~~~-v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
|.+.+ +.... .+..+.+.++++++..+.+...... ..+.+..+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~--------~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM--------SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC--------CHHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 76542 22211 2334899999999999998776511 1345577899999999766443
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.94 E-value=0.00024 Score=75.42 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=96.9
Q ss_pred cccccchhhHHHHHHHHHHhc------------CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
..+++|. ++.++.|.+.+. ....+-|.++|++|+|||+||+++++... .. ..+.+..+.-.
T Consensus 11 ~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~ 83 (322)
T 1xwi_A 11 WSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLV 83 (322)
T ss_dssp GGGSCSC--HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSC
T ss_pred HHHhcCH--HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHH
Confidence 4578887 555555554431 11246789999999999999999999751 11 23334443321
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc-------------ccccccC---CCCCC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR-------------LEEVGIP---EPSEE 269 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-------------~~~~~~~---~~~~~ 269 (897)
+ .... ........+.......++.+|++|+++.... ...+... +....
T Consensus 84 ~--------------~~~g--~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 84 S--------------KWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp C--------------SSCC--SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred h--------------hhhh--HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 1 0000 1122333344444345678999999975310 0111111 11112
Q ss_pred CCcEEEEEeCCchhh-cc--cccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCC-hHHHHHHH
Q 043332 270 NGCKLVITTRSLGVC-RF--MDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGL-PLAIVTVA 343 (897)
Q Consensus 270 ~gs~iivTTR~~~v~-~~--~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plal~~~~ 343 (897)
.+..||.||...... .. -.... +.+...+.++-.+++...+....... .......|++.+.|. +-.+..+.
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344555566543221 10 02222 78888899999999987664322111 134567788888887 44454443
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.92 E-value=9.2e-05 Score=78.80 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=99.2
Q ss_pred cccccchhhHHHHHHHHHHhc----------C--CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLM----------G--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
..+++|. +..++.|.+.+. . ...+-|.++|++|+|||++|+++++... .. .+.++.+
T Consensus 17 ~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~~---~~~v~~~--- 85 (322)
T 3eie_A 17 WEDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---ST---FFSVSSS--- 85 (322)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT---CE---EEEEEHH---
T ss_pred HHHhcCh--HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC---CC---EEEEchH---
Confidence 4578997 666777766651 1 1245789999999999999999999752 22 2333321
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc-------------ccccccC---CCCCC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR-------------LEEVGIP---EPSEE 269 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-------------~~~~~~~---~~~~~ 269 (897)
++.. .. .......+..+.......++.+|+||+++.... ...+... +....
T Consensus 86 ---~l~~--------~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 86 ---DLVS--------KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---HHHT--------TT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---HHhh--------cc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1111 00 112233344444444455678999999974311 1111111 11123
Q ss_pred CCcEEEEEeCCchhhc-cc--ccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCC-hHHHHHH
Q 043332 270 NGCKLVITTRSLGVCR-FM--DCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGL-PLAIVTV 342 (897)
Q Consensus 270 ~gs~iivTTR~~~v~~-~~--~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plal~~~ 342 (897)
.+..||.||....... .+ .... +.+...+.++-.+++...+....... .......|++.+.|. +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 4556666776532211 10 1122 77888899999999988765432111 134566788888874 4444443
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.92 E-value=0.00042 Score=72.79 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=96.3
Q ss_pred cccccchhhHHHHHHHHHHhcC------------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLMG------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
..+++|. +..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++... . ..+.+..+.-.
T Consensus 20 ~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~---~---~~~~i~~~~l~ 91 (297)
T 3b9p_A 20 WTDIAGQ--DVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS---A---TFLNISAASLT 91 (297)
T ss_dssp GGGSCCC--HHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT---C---EEEEEESTTTS
T ss_pred HHHhCCh--HHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC---C---CeEEeeHHHHh
Confidence 3578998 6666666665521 1246789999999999999999998752 1 23344443321
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccccc-------------cccc---cCCCC--
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRL-------------EEVG---IPEPS-- 267 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~-------------~~~~---~~~~~-- 267 (897)
. ... .........+.......++.+|++|+++....- ..+. ...+.
T Consensus 92 ~--------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 92 S--------------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp S--------------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred h--------------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 1 000 111222333333333456789999999653110 0011 01111
Q ss_pred CCCCcEEEEEeCCchh-----hcccccceEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHHH
Q 043332 268 EENGCKLVITTRSLGV-----CRFMDCKEIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIVT 341 (897)
Q Consensus 268 ~~~gs~iivTTR~~~v-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~~ 341 (897)
.+.+..||.||..... ...+. ..+.+...+.++...++...+..... .-..+....+++.+.|.+- ++..
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 1234556667765321 12111 12677777888888888766543211 1113456778888998875 4444
Q ss_pred H
Q 043332 342 V 342 (897)
Q Consensus 342 ~ 342 (897)
+
T Consensus 232 l 232 (297)
T 3b9p_A 232 L 232 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.89 E-value=3.8e-05 Score=74.39 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=40.5
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|| +.+++.+.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGR--DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcc--hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 368999 7788999999887767778999999999999999999986
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=8.1e-05 Score=79.98 Aligned_cols=180 Identities=12% Similarity=0.173 Sum_probs=100.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCc-EEEEEEeCCCCCHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++|. +..++.+..++..++.+-+.++|+.|+||||+|+.+++.... ..+. .+..+..++......+...+ ..
T Consensus 25 ~~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~~~ir~~i-~~ 99 (340)
T 1sxj_C 25 DEVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGIDVVRNQI-KD 99 (340)
T ss_dssp GGCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSHHHHHTHH-HH
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccHHHHHHHH-HH
Confidence 367887 667788888887776555899999999999999999998631 1111 12223333322222222111 11
Q ss_pred HcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCch-hhcc--cccceE
Q 043332 218 LNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLG-VCRF--MDCKEI 292 (897)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~-v~~~--~~~~~~ 292 (897)
+..... ...+.+-++|+|+++.. ...+.+...+......+++|++|.... +... -.+..+
T Consensus 100 ~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 100 FASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 110000 00123678999998653 112222211111124556777765432 1111 112348
Q ss_pred eccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 293 GVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 293 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
.+.+++.++..+.+...+....... ..+....+++.++|.+--+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999888877653221111 145667888999998875433
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.88 E-value=0.00022 Score=78.04 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=95.6
Q ss_pred cccccchhhHHHHHHHHHHhcC------------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLMG------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
..+++|. +..++.+.+++.. ...+-|.|+|.+|+|||++|+++++... . ..+.+..+.-.
T Consensus 114 ~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~---~---~~~~v~~~~l~ 185 (389)
T 3vfd_A 114 FDDIAGQ--DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN---A---TFFNISAASLT 185 (389)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT---C---EEEEECSCCC-
T ss_pred hHHhCCH--HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc---C---cEEEeeHHHhh
Confidence 4579998 6677777766621 1246789999999999999999988741 1 23334333321
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc--------c-----ccccccCC---C-CC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF--------R-----LEEVGIPE---P-SE 268 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~--------~-----~~~~~~~~---~-~~ 268 (897)
+. . .+ ........+..........+|+||+++... . ...+...+ . ..
T Consensus 186 ~~--~-------~g-------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 SK--Y-------VG-------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred cc--c-------cc-------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 10 0 00 001222333333333456799999996430 0 01111111 0 01
Q ss_pred CCCcEEEEEeCCchhh-cc--cccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChH-HHHHH
Q 043332 269 ENGCKLVITTRSLGVC-RF--MDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPL-AIVTV 342 (897)
Q Consensus 269 ~~gs~iivTTR~~~v~-~~--~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pl-al~~~ 342 (897)
.....||.||...... .. -.... +.+...+.++..+++...+..... .-..+....|++.+.|..- ++..+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2234555566542211 11 11222 778889999999999876644321 1123456788888888654 44443
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=1.5e-05 Score=85.94 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=63.9
Q ss_pred HhhCCCCccEEEecCCCCCcCCcccccCcccceeeccccccccCCc-chh--ccccCCEeeccCC--c------CcccCc
Q 043332 541 FFVHMHGLKVLNLSHTDIEVLPSSVSDLTNLRSLLLRYCLRLRRVP-SVA--KLLALHYLDLEAT--R------IEEVPE 609 (897)
Q Consensus 541 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~~--~l~~L~~L~l~~~--~------l~~lp~ 609 (897)
++..+++|+.|+|+++.-..+|. + .+++|+.|+|..|....... .++ .+++|++|+|+.+ . +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34556666666666653123333 2 25666666666553211111 222 5666666666421 1 111111
Q ss_pred cc--cCCCCCCEEeCCCCCCCcCC-CCc--ccCCcccCeEecccCchhhhhcHHH----HHhhhcccceeEEEeccch
Q 043332 610 GM--EMLENLSYLYLYSLPLKKFP-TGI--LPRLRDLYKLKLSFGREALRETVEE----AARLSNRLDTFEGHFSTLK 678 (897)
Q Consensus 610 ~~--~~l~~L~~L~l~~~~~~~~~-~~~--l~~l~~L~~L~l~~~~~~~~~~~~~----l~~l~~~L~~L~l~~~~l~ 678 (897)
.+ +.+++|++|++.+|.+.... ..+ .+.+++|++|+++ .+.....+... +..+++ |+.|+++.|.+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs-~n~L~d~G~~~L~~~L~~l~~-L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS-AGVLTDEGARLLLDHVDKIKH-LKFINMKYNYLS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC-SSCCBHHHHHHHHTTHHHHTT-CSEEECCSBBCC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC-CCCCChHHHHHHHhhcccCCc-ceEEECCCCcCC
Confidence 12 23566777777666544210 000 1245667777776 33333333322 234566 777777666543
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.83 E-value=0.00022 Score=78.35 Aligned_cols=132 Identities=9% Similarity=0.142 Sum_probs=90.8
Q ss_pred cccCCCCCCCCCC-CccEEEccCCCCcccCChhHhhCCCCccEEEecCCC---CCcCCc-ccccCcccceeecccccccc
Q 043332 509 IKEIPSYMSPHCD-ILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTD---IEVLPS-SVSDLTNLRSLLLRYCLRLR 583 (897)
Q Consensus 509 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~lp~-~i~~l~~L~~L~L~~~~~~~ 583 (897)
++.+....|.+|. .|+.+.+.. .+..++...|.++.+|+.+.+..+. ++.+.. .+..+.+|+.+.+.. .++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred eeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence 5566777777774 588888875 3777888888889999999887653 555543 466778888777765 356
Q ss_pred CCc--chhccccCCEeeccCCcCcccCc-cccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 584 RVP--SVAKLLALHYLDLEATRIEEVPE-GMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 584 ~lp--~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
.++ .+..+.+|+.+.+..+ +..++. .+....+|+.+.+..+ +..+....+.. .+|+.+.+.
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip 190 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIP 190 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEEC
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEEC
Confidence 666 4788888888888643 344433 3667778888887644 55555555543 567777665
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.80 E-value=8.1e-05 Score=79.42 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=97.1
Q ss_pred ccc-chhhHHHHHHHHHHhcCC--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 043332 140 TLA-GEKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAA 216 (897)
Q Consensus 140 ~~v-Gr~~~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 216 (897)
+++ |.........+..+.... ....+.|+|++|+||||||+.+++..... . ..+++++. .++...+..
T Consensus 12 ~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~------~~~~~~~~~ 82 (324)
T 1l8q_A 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSA------DDFAQAMVE 82 (324)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEH------HHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEH------HHHHHHHHH
Confidence 444 643344445555555443 35678999999999999999999986322 1 22455543 233334433
Q ss_pred HHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc---c-ccccccCCC-CCCCCcEEEEEeCCchh--------
Q 043332 217 ALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF---R-LEEVGIPEP-SEENGCKLVITTRSLGV-------- 283 (897)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~---~-~~~~~~~~~-~~~~gs~iivTTR~~~v-------- 283 (897)
.+... . .......+ .+..+|++||+.... . .+.+...+. ....|..||+||....-
T Consensus 83 ~~~~~---~------~~~~~~~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 83 HLKKG---T------INEFRNMY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHT---C------HHHHHHHH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred HHHcC---c------HHHHHHHh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhH
Confidence 33211 0 11122222 235699999997532 1 122211111 01245678888864321
Q ss_pred -hcccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHH
Q 043332 284 -CRFMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAI 339 (897)
Q Consensus 284 -~~~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal 339 (897)
...+.... +.+++ +.++..+++...+....... ..+....|++.+ |..-.+
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHHH
Confidence 12222223 88999 99999999988764322111 245667788888 776543
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.74 E-value=0.00017 Score=77.67 Aligned_cols=178 Identities=17% Similarity=0.155 Sum_probs=94.7
Q ss_pred cccccchhhHHHHHHHHHHhc----------C--CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLM----------G--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
..+++|. +..++.|.+.+. . ...+-|.|+|++|+|||+||+++++... .. .+.+..+
T Consensus 50 ~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~---~~~v~~~--- 118 (355)
T 2qp9_X 50 WEDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---ST---FFSVSSS--- 118 (355)
T ss_dssp GGGSCCG--GGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CE---EEEEEHH---
T ss_pred HHHhCCH--HHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CC---EEEeeHH---
Confidence 3478887 445566655541 1 1234588999999999999999999862 12 2233221
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc-------------ccccccCC---CCCC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR-------------LEEVGIPE---PSEE 269 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~-------------~~~~~~~~---~~~~ 269 (897)
++.. .... ........+.......++.+|+||+++.... ...+...+ ....
T Consensus 119 ---~l~~--------~~~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 ---DLVS--------KWMG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---HHHS--------CC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---HHhh--------hhcc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 1111 1100 1112233344433345688999999975310 11111111 1112
Q ss_pred CCcEEEEEeCCchh-hcc--cccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCC-hHHHHHH
Q 043332 270 NGCKLVITTRSLGV-CRF--MDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGL-PLAIVTV 342 (897)
Q Consensus 270 ~gs~iivTTR~~~v-~~~--~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plal~~~ 342 (897)
.+..||.||..... ... -.... +.+...+.++-.+++...+....... .......|++.+.|. +-.|..+
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556666654321 110 02222 77888899999999987765332111 134456788888884 4444443
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.69 E-value=2.9e-05 Score=83.62 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=84.4
Q ss_pred CCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCc-CCcccc--cCcccceeecccccc-------ccCCc-
Q 043332 518 PHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEV-LPSSVS--DLTNLRSLLLRYCLR-------LRRVP- 586 (897)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~--~l~~L~~L~L~~~~~-------~~~lp- 586 (897)
..+++|+.|.+++|..+ .++. + .+++|+.|+|..|.++. ....+. .+++|++|+|+.+.. +..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 45677888888776322 2333 2 36778888887776641 112232 677888888753211 11222
Q ss_pred c--hhccccCCEeeccCCcCcc-cCccc---cCCCCCCEEeCCCCCCCc-----CCCCcccCCcccCeEecccCchhhhh
Q 043332 587 S--VAKLLALHYLDLEATRIEE-VPEGM---EMLENLSYLYLYSLPLKK-----FPTGILPRLRDLYKLKLSFGREALRE 655 (897)
Q Consensus 587 ~--~~~l~~L~~L~l~~~~l~~-lp~~~---~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (897)
. ...+++|++|++++|.+.. .+..+ ..+++|++|+++.|.+.. ++.+ +.++++|+.|+++ .+.....
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~-~n~i~d~ 322 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMK-YNYLSDE 322 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECC-SBBCCHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECC-CCcCCHH
Confidence 1 2356789999998887652 22222 356789999998887765 2333 3567889999998 4455555
Q ss_pred cHHHHHh
Q 043332 656 TVEEAAR 662 (897)
Q Consensus 656 ~~~~l~~ 662 (897)
.+..+..
T Consensus 323 ~~~~l~~ 329 (362)
T 2ra8_A 323 MKKELQK 329 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.67 E-value=0.00059 Score=75.83 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=95.1
Q ss_pred cccccchhhHHHHHHHHHHhc------------CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
..+++|. +..++.|.+.+. ....+-|.|+|++|+|||+||+++++... .. ..+.++.+.-
T Consensus 133 ~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~---~~~~v~~~~l- 204 (444)
T 2zan_A 133 WSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDL- 204 (444)
T ss_dssp GGGSCSC--HHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SS---EEEEECCC---
T ss_pred HHHhcCH--HHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CC---CEEEEeHHHH-
Confidence 4578897 566666666552 12246789999999999999999999751 11 1222332221
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc-------------cccccccCCCC---CC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF-------------RLEEVGIPEPS---EE 269 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-------------~~~~~~~~~~~---~~ 269 (897)
.... .+.. . . .+..+.......++.+|+||+++... ....+...+.. ..
T Consensus 205 -----~~~~---~g~~-~--~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 205 -----VSKW---LGES-E--K----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ---------------C-C--C----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -----Hhhh---cchH-H--H----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 1110 1111 0 1 12223333334567899999997531 01112222211 13
Q ss_pred CCcEEEEEeCCchhhc---ccccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCC-hHHHHHH
Q 043332 270 NGCKLVITTRSLGVCR---FMDCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGL-PLAIVTV 342 (897)
Q Consensus 270 ~gs~iivTTR~~~v~~---~~~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plal~~~ 342 (897)
.+..||.||....... .-.... +.+...+.++-..+|...+....... .......|++.+.|. +-.|..+
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 4556666776532211 002222 77888888888888887764322111 134456788889885 4444443
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.63 E-value=0.00038 Score=77.98 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=80.2
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccC--C--CcEEEEEEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN--K--FNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~--f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
.+||| +.+++++++.+......-+.|+|++|+|||++|+.++........ . -..++.+..+.
T Consensus 181 ~iiGr--~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~------------ 246 (468)
T 3pxg_A 181 PVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------ 246 (468)
T ss_dssp CCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CccCc--HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc------------
Confidence 68999 788899999987665566789999999999999999998632100 0 01122222220
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchh------hcc-c-
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGV------CRF-M- 287 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v------~~~-~- 287 (897)
...... ......+.......++.+|++| ........+...+. ....++|.+|..... ... .
T Consensus 247 -~~~g~~------e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 -KYRGEF------EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -cccchH------HHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 000000 0112233344444567889999 11111122322222 223466666654431 111 1
Q ss_pred ccceEeccCCCHHHHHHHHHHhhh
Q 043332 288 DCKEIGVELLSQEEALNLFLDKVR 311 (897)
Q Consensus 288 ~~~~~~l~~L~~~ea~~Lf~~~~~ 311 (897)
....+.+++.+.++...++.....
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 112288999999999999986543
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.62 E-value=0.00078 Score=70.75 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=91.2
Q ss_pred cccccchhhHHHHHHHHHHhcC-------------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 138 TATLAGEKTKKVVERIWEDLMG-------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
..+++|. +..++++.+++.. ...+.|.|+|++|+|||++|+++++... .. .+.+ .
T Consensus 14 ~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~---~i~v--~-- 81 (301)
T 3cf0_A 14 WEDIGGL--EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---AN---FISI--K-- 81 (301)
T ss_dssp GGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CE---EEEE--C--
T ss_pred HHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CC---EEEE--E--
Confidence 3468887 5555555554421 2356799999999999999999999752 11 2222 2
Q ss_pred CCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc----------------ccccccCCC--
Q 043332 205 LDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR----------------LEEVGIPEP-- 266 (897)
Q Consensus 205 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~~~~~~~-- 266 (897)
..++.... .+.. . ..+..+........+.+|++|+++.... ...+...+.
T Consensus 82 --~~~l~~~~---~g~~---~----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 --GPELLTMW---FGES---E----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp --HHHHHHHH---HTTC---T----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred --hHHHHhhh---cCch---H----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 22232221 1211 1 1122333333345678999999974210 011111111
Q ss_pred CCCCCcEEEEEeCCchhh-cc-c---ccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHH
Q 043332 267 SEENGCKLVITTRSLGVC-RF-M---DCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLA 338 (897)
Q Consensus 267 ~~~~gs~iivTTR~~~v~-~~-~---~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Pla 338 (897)
....+..||.||...+.. .. . .... +.+...+.++-.+++...+........... ..+++.+.|.|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 112345677777654321 11 1 1222 788889999988888776543221111122 3455667776643
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.51 E-value=0.00028 Score=85.53 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=83.7
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccC----CCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
.++|| ++++.++++.+.....+-+.++|.+|+||||+|+.+++....... .-..++++.++.-..
T Consensus 171 ~viGr--~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 171 PVIGR--DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp CCCSC--HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred ccCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 68999 788999999987766666889999999999999999998632110 012344443322110
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhc-cCeEEEEEcCCCcccc-------cc---ccccCCCCCCCCcEEEEEeCCchh-
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKA-KAKFVLILDDMWKEFR-------LE---EVGIPEPSEENGCKLVITTRSLGV- 283 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~~r~LlVlDdv~~~~~-------~~---~~~~~~~~~~~gs~iivTTR~~~v- 283 (897)
+.. ...+.......+...+.. +++.+|++|++..... ++ .+...+. ..+..+|.+|.....
T Consensus 240 ---g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ---GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYR 312 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHH
T ss_pred ---cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHh
Confidence 000 011222333444444433 3678999999975320 11 1111111 123456655553321
Q ss_pred ----hccc-c-cceEeccCCCHHHHHHHHHHhh
Q 043332 284 ----CRFM-D-CKEIGVELLSQEEALNLFLDKV 310 (897)
Q Consensus 284 ----~~~~-~-~~~~~l~~L~~~ea~~Lf~~~~ 310 (897)
.... . ...+.+++.+.++..+++....
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1111 1 1128899999999999997543
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=5.5e-05 Score=73.24 Aligned_cols=105 Identities=18% Similarity=0.170 Sum_probs=57.6
Q ss_pred hhCCCCccEEEecCC-CCCc-----CCcccccCcccceeeccccccccC-----Cc-chhccccCCEeeccCCcCcc---
Q 043332 542 FVHMHGLKVLNLSHT-DIEV-----LPSSVSDLTNLRSLLLRYCLRLRR-----VP-SVAKLLALHYLDLEATRIEE--- 606 (897)
Q Consensus 542 ~~~l~~Lr~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~-----lp-~~~~l~~L~~L~l~~~~l~~--- 606 (897)
+...+.|++|+|++| .+.. +...+...++|++|+|++|. +.. +. .+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 344555556666555 4431 23334445556666666653 221 11 23344567777777776653
Q ss_pred --cCccccCCCCCCEEeC--CCCCCCcCC----CCcccCCcccCeEecc
Q 043332 607 --VPEGMEMLENLSYLYL--YSLPLKKFP----TGILPRLRDLYKLKLS 647 (897)
Q Consensus 607 --lp~~~~~l~~L~~L~l--~~~~~~~~~----~~~l~~l~~L~~L~l~ 647 (897)
+...+...++|++|++ ++|.+..-. ...+...++|++|+++
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 4455666677777777 666665421 1123455678888877
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.48 E-value=8.2e-05 Score=71.69 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcC---CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC
Q 043332 147 KKVVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP 223 (897)
Q Consensus 147 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 223 (897)
++.++.+.++..+ .....+.|+|++|+||||||+.+++......+ + .++++ +..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 4445555555533 34578999999999999999999998732222 1 12333 344455555444432211
Q ss_pred CChhHHHHHHHHHHHHhccCeEEEEEcCCCc--ccccc--ccccCCCC-CCCCcEEEEEeCCc
Q 043332 224 ENEDEVRRAGRLSGMLKAKAKFVLILDDMWK--EFRLE--EVGIPEPS-EENGCKLVITTRSL 281 (897)
Q Consensus 224 ~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~--~~~~~--~~~~~~~~-~~~gs~iivTTR~~ 281 (897)
. .+...+. +.-+|||||++. ...|. .+...+.. ...|..||+||...
T Consensus 92 ~---------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 T---------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp S---------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred H---------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 1222221 345899999973 22222 11111110 12467888888754
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.46 E-value=3.6e-05 Score=71.18 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=29.9
Q ss_pred cccchhhHHHHHHHHHHhc---CCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+ ...+.++.+.+. ... .-|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~--s~~~~~~~~~~~~~a~~~-~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGR--SEWINQYRRRLQQLSETD-IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCS--SHHHHHHHHHHHHHTTCC-SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeC--CHHHHHHHHHHHHHhCCC-CCEEEECCCCCCHHHHHHHHHHhC
Confidence 46777 344555555442 233 346799999999999999999875
No 205
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00046 Score=72.24 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhcc-CCCcEEEEEEeCC-CCCHHHHHHHHHHHHcCCCCC
Q 043332 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQ-PLDLIKLQNEIAAALNQSLPE 224 (897)
Q Consensus 147 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~ 224 (897)
++.++.|...+..+..+...++|+.|+||||+|+.+++....-. .+.+. .++..+. ...+..+. ++.+.+.....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~ir-~li~~~~~~p~- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDIR-TIKDFLNYSPE- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHHH-HHHHHHTSCCS-
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHHH-HHHHHHhhccc-
Confidence 44566777777766678999999999999999999988631111 23343 4454432 33433332 24443332110
Q ss_pred ChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCc-hhhcccccceEeccCCCHHH
Q 043332 225 NEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSL-GVCRFMDCKEIGVELLSQEE 301 (897)
Q Consensus 225 ~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~-~v~~~~~~~~~~l~~L~~~e 301 (897)
.+++-++|+|+++.. ...+.+...+......+.+|++|.+. .+........+++.++++++
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~ 143 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 143 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHH
Confidence 234668899999763 22333333332224567777776543 23221111158999999999
Q ss_pred HHHHHHHhh
Q 043332 302 ALNLFLDKV 310 (897)
Q Consensus 302 a~~Lf~~~~ 310 (897)
..+.+.+.+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887765
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.0015 Score=78.18 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=89.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccC---CCcEEEEE-EeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIWV-TVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv-~vs~~~~~~~~~~~i~ 215 (897)
.++|| +.+++++++.|......-+.|+|.+|+||||+|+.+++......- ..+..+|. ..+.-
T Consensus 187 ~~iGr--~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 187 PLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp CCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CccCC--HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 68999 788899999998766677889999999999999999987632110 12333332 11110
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------cc-cccccCCCCCCCCcEEEEEeCCchhh
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------RL-EEVGIPEPSEENGCKLVITTRSLGVC 284 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------~~-~~~~~~~~~~~~gs~iivTTR~~~v~ 284 (897)
+.. .............+...+...++.+|++|++.... +. ..+...+. ..+..+|.+|......
T Consensus 254 --~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 --LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp ---CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHH
T ss_pred --hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHh
Confidence 000 01112233344455555544457899999997431 11 11222222 2345666666543321
Q ss_pred cc-------c-ccceEeccCCCHHHHHHHHHHhh
Q 043332 285 RF-------M-DCKEIGVELLSQEEALNLFLDKV 310 (897)
Q Consensus 285 ~~-------~-~~~~~~l~~L~~~ea~~Lf~~~~ 310 (897)
.. . ....+.+...+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11 1 11138899999999999887654
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.40 E-value=0.002 Score=68.68 Aligned_cols=48 Identities=6% Similarity=0.246 Sum_probs=35.3
Q ss_pred EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHHH
Q 043332 292 IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVTV 342 (897)
Q Consensus 292 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~~ 342 (897)
+.+++.+.++-.+++.+.+..... ....+.+..|++.+.|.|..+..+
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 789999999999999887643211 122466888999999999755443
No 208
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=7.6e-05 Score=72.23 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=65.1
Q ss_pred CCCCCccEEEccCCCCcccCC----hhHhhCCCCccEEEecCCCCCc-----CCcccccCcccceeeccccccccC----
Q 043332 518 PHCDILSTLLLQANGNLWTIP----ECFFVHMHGLKVLNLSHTDIEV-----LPSSVSDLTNLRSLLLRYCLRLRR---- 584 (897)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~---- 584 (897)
..++.|++|++++|..+..-. ...+...+.|++|+|++|.|.. +...+...++|++|+|++|. ++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 456677777777762332211 1123556777777777777652 33444555677777777763 332
Q ss_pred -Cc-chhccccCCEeec--cCCcCcc-----cCccccCCCCCCEEeCCCCCC
Q 043332 585 -VP-SVAKLLALHYLDL--EATRIEE-----VPEGMEMLENLSYLYLYSLPL 627 (897)
Q Consensus 585 -lp-~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~ 627 (897)
+. .+...++|++|++ ++|.+.. +...+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 22 3555667777777 6676653 334455567777777777654
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0035 Score=67.22 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=83.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|.|||.||+++++... .. .+.|+.++-.+ .. .......+..+...-..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~---~~---f~~v~~s~l~s--------------k~--vGese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD---CK---FIRVSGAELVQ--------------KY--IGEGSRMVRELFVMARE 239 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT---CE---EEEEEGGGGSC--------------SS--TTHHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC---CC---ceEEEhHHhhc--------------cc--cchHHHHHHHHHHHHHH
Confidence 46689999999999999999999862 22 34444433211 00 12233444555555445
Q ss_pred cCeEEEEEcCCCccc----------c------ccccccCCC--CCCCCcEEEEEeCCchhh----cccccc-e-EeccCC
Q 043332 242 KAKFVLILDDMWKEF----------R------LEEVGIPEP--SEENGCKLVITTRSLGVC----RFMDCK-E-IGVELL 297 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~----------~------~~~~~~~~~--~~~~gs~iivTTR~~~v~----~~~~~~-~-~~l~~L 297 (897)
..+++|++|+++... + +..+...+. ....+..||.||...+.. .+.+.. . +.++.-
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 678999999987421 0 011111111 123344566677654332 111222 2 788888
Q ss_pred CHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 298 SQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 298 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
+.++-.++|+.....-......+ ...|++.+.|.-
T Consensus 320 d~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 88888888876654322111222 345777787754
No 210
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.30 E-value=0.0003 Score=71.72 Aligned_cols=78 Identities=26% Similarity=0.207 Sum_probs=43.2
Q ss_pred hCCCCccEEEecCCCCCcC---CcccccCcccceeeccccccccCCcchhccc--cCCEeeccCCcCcc-cC-------c
Q 043332 543 VHMHGLKVLNLSHTDIEVL---PSSVSDLTNLRSLLLRYCLRLRRVPSVAKLL--ALHYLDLEATRIEE-VP-------E 609 (897)
Q Consensus 543 ~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~~~~lp~~~~l~--~L~~L~l~~~~l~~-lp-------~ 609 (897)
.++++|+.|+|++|.|+.+ |..+..+++|++|+|++| .++.+..+..+. +|++|++++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 3455666666666665543 234445666666666665 334433333333 66777777766542 33 1
Q ss_pred cccCCCCCCEEe
Q 043332 610 GMEMLENLSYLY 621 (897)
Q Consensus 610 ~~~~l~~L~~L~ 621 (897)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 256677777776
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.29 E-value=0.00017 Score=73.48 Aligned_cols=78 Identities=26% Similarity=0.331 Sum_probs=40.9
Q ss_pred cCcccceeeccccccccCC---c-chhccccCCEeeccCCcCcccCccccCCC--CCCEEeCCCCCCCc-CCC------C
Q 043332 567 DLTNLRSLLLRYCLRLRRV---P-SVAKLLALHYLDLEATRIEEVPEGMEMLE--NLSYLYLYSLPLKK-FPT------G 633 (897)
Q Consensus 567 ~l~~L~~L~L~~~~~~~~l---p-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~-~~~------~ 633 (897)
++++|+.|+|++|. ++.+ | .+..+++|++|+|++|.+..+ ..+..+. +|++|++++|.+.. +|. .
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45566666666653 3332 2 244666666666666666554 2233333 66666666666543 221 1
Q ss_pred cccCCcccCeEec
Q 043332 634 ILPRLRDLYKLKL 646 (897)
Q Consensus 634 ~l~~l~~L~~L~l 646 (897)
++..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2445556666553
No 212
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0045 Score=67.51 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=82.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|.|||+||+++++... .. .+.++.+.-.+ .. .......+..+...-..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~---~~---~~~v~~s~l~s--------------k~--~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG---AN---FIFSPASGIVD--------------KY--IGESARIIREMFAYAKE 272 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGTCC--------------SS--SSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC---CC---EEEEehhhhcc--------------cc--chHHHHHHHHHHHHHHh
Confidence 57799999999999999999999862 22 33444433211 00 11223334444444445
Q ss_pred cCeEEEEEcCCCcccc----------------ccccccCCC--CCCCCcEEEEEeCCchhh----cccccce--EeccCC
Q 043332 242 KAKFVLILDDMWKEFR----------------LEEVGIPEP--SEENGCKLVITTRSLGVC----RFMDCKE--IGVELL 297 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~----------------~~~~~~~~~--~~~~gs~iivTTR~~~v~----~~~~~~~--~~l~~L 297 (897)
..+++|++|+++.... +..+...+. ....+..||.||...+.. .+.+... +.++.-
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 6789999999974210 011111111 123345677777654332 1112222 788888
Q ss_pred CHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 298 SQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 298 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
+.++-.++|+.....-......+ ...+++.+.|.-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 88888888876654322111222 245667777654
No 213
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0028 Score=68.95 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=91.6
Q ss_pred cccchhhHHHHHHHHHHh----cC---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 140 TLAGEKTKKVVERIWEDL----MG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
++.|- ++.+++|.+.+ .. ...+-|.++|++|.|||.||+++++... .. .+.++.+.-.+
T Consensus 210 DIgGl--~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---~~---fi~vs~s~L~s 281 (467)
T 4b4t_H 210 DVGGC--KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD---AT---FIRVIGSELVQ 281 (467)
T ss_dssp SCTTC--HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGGCC
T ss_pred HhccH--HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC---CC---eEEEEhHHhhc
Confidence 56675 55555555433 21 2357789999999999999999999862 22 34444332110
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcccc----------------ccccccCCC--CC
Q 043332 207 LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFR----------------LEEVGIPEP--SE 268 (897)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~----------------~~~~~~~~~--~~ 268 (897)
.. .......+..+...-....+++|++|+++.... ...+...+. ..
T Consensus 282 --------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 --------------KY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp --------------CS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred --------------cc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00 112233444455444456789999999874210 001111111 11
Q ss_pred CCCcEEEEEeCCchhh----ccccc-ce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 269 ENGCKLVITTRSLGVC----RFMDC-KE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 269 ~~gs~iivTTR~~~v~----~~~~~-~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
..+..||.||...+.. .+.+. .. +.++.-+.++-.++|+.....-......+ ...|++.+.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 2344556666543321 11122 22 78888888888888876654322111222 245777887754
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.0014 Score=78.42 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=81.2
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCC---CcE-EEEEEeCCCCCHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNV-VIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~-~~wv~vs~~~~~~~~~~~i~ 215 (897)
.+||| +.+++++++.+......-+.++|++|+|||++|+.+++........ .++ ++.++.
T Consensus 181 ~iiG~--~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 181 PVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp CCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CccCc--hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 68999 8889999999877665667899999999999999999986221100 111 111222
Q ss_pred HHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccccccccccCCCCCCCCcEEEEEeCCchh------hccc--
Q 043332 216 AALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEFRLEEVGIPEPSEENGCKLVITTRSLGV------CRFM-- 287 (897)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~~~~~~~~~~~~~~~gs~iivTTR~~~v------~~~~-- 287 (897)
+... .......+..+.......++.+|++|. .......+...+. ....++|.||..... ....
T Consensus 245 ---g~~~--~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ---GTKY--RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ---cccc--cchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 0000 000111223334444445678999992 1111122222222 234566666665441 1101
Q ss_pred ccceEeccCCCHHHHHHHHHHhhh
Q 043332 288 DCKEIGVELLSQEEALNLFLDKVR 311 (897)
Q Consensus 288 ~~~~~~l~~L~~~ea~~Lf~~~~~ 311 (897)
....+.++..+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 112388999999999999986543
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0024 Score=69.60 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=91.6
Q ss_pred cccchhhHHHHHHHHHHh----cC---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 140 TLAGEKTKKVVERIWEDL----MG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L----~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
++.|- ++.+++|.+.+ .. ...+-|.++|++|.|||.||+++++... .. .+.++.+.-.
T Consensus 182 digGl--~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---~~---f~~v~~s~l~- 252 (434)
T 4b4t_M 182 DVGGL--DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN---AT---FLKLAAPQLV- 252 (434)
T ss_dssp GSCSC--HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGGC-
T ss_pred hcCcH--HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---CC---EEEEehhhhh-
Confidence 67776 55555555443 22 1256799999999999999999999862 22 3344433211
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCcc-------cc---------ccccccCCC--CC
Q 043332 207 LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE-------FR---------LEEVGIPEP--SE 268 (897)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~-------~~---------~~~~~~~~~--~~ 268 (897)
... .......+..+........+++|++|+++.. .. ...+...+. ..
T Consensus 253 -------------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 253 -------------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -------------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -------------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 111 1122334444444444456899999998631 00 011111111 11
Q ss_pred CCCcEEEEEeCCchhh-c---ccccc-e-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 269 ENGCKLVITTRSLGVC-R---FMDCK-E-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 269 ~~gs~iivTTR~~~v~-~---~~~~~-~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
..+..||.||...+.. . +.+.. . +.++.-+.++-.++|+.....-......+ ...|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2344566677654332 1 11222 2 78888888888888876554322111122 345777777753
No 216
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0053 Score=66.04 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=81.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|.|||.||+++++... .. .+.++.++-. .. -.......+..+......
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~---~~---fi~v~~s~l~--------------sk--~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS---AT---FLRIVGSELI--------------QK--YLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT---CE---EEEEESGGGC--------------CS--SSSHHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC---CC---EEEEEHHHhh--------------hc--cCchHHHHHHHHHHHHHh
Confidence 57799999999999999999999862 22 2334433211 00 012233344455554445
Q ss_pred cCeEEEEEcCCCcccc----------------ccccccCCC--CCCCCcEEEEEeCCchhhc----ccccce--EeccCC
Q 043332 242 KAKFVLILDDMWKEFR----------------LEEVGIPEP--SEENGCKLVITTRSLGVCR----FMDCKE--IGVELL 297 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~----------------~~~~~~~~~--~~~~gs~iivTTR~~~v~~----~~~~~~--~~l~~L 297 (897)
..+++|++|+++.... +..+...+. ....+..||.||...+... +.+... +.++.-
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 6789999999874210 001111110 1223445666776543321 112222 778777
Q ss_pred CHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 298 SQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 298 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
+.++-.++|......-......+ ...|++.+.|.-
T Consensus 354 d~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 88888888876654322111222 345667777653
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.005 Score=67.01 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=55.4
Q ss_pred ccccchhhHHHHHHHHHHhc----C---------CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 139 ATLAGEKTKKVVERIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
.++.|- ++.+++|.+.+. . ...+-|.++|++|+|||++|+++++... .. .+.|+.++-.
T Consensus 172 ~digGl--~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~---~~~v~~~~l~ 243 (428)
T 4b4t_K 172 ADVGGL--DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK---AA---FIRVNGSEFV 243 (428)
T ss_dssp GGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT---CE---EEEEEGGGTC
T ss_pred HHhccH--HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---eEEEecchhh
Confidence 367776 555555554432 2 1256689999999999999999999862 22 3444443321
Q ss_pred CHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCC
Q 043332 206 DLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMW 253 (897)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~ 253 (897)
+ . -.......+..+........++++++|+++
T Consensus 244 ~--------------~--~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 244 H--------------K--YLGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp C--------------S--SCSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred c--------------c--ccchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 1 0 011223344455554445678999999986
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.12 E-value=0.006 Score=68.20 Aligned_cols=173 Identities=12% Similarity=0.108 Sum_probs=91.6
Q ss_pred cccchhhHHHHHHHHHHhc-------------CCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 140 TLAGEKTKKVVERIWEDLM-------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
.++|. +..++++.+++. ....+-|.|+|++|+|||++|+++++.. ... .+.+..+
T Consensus 205 ~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~---- 272 (489)
T 3hu3_A 205 DIGGC--RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP---- 272 (489)
T ss_dssp GCCSC--HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH----
T ss_pred HcCCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch----
Confidence 57887 556666665553 1234568999999999999999998874 112 2334321
Q ss_pred HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc-------------cccccccCCC--CCCCC
Q 043332 207 LIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF-------------RLEEVGIPEP--SEENG 271 (897)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~-------------~~~~~~~~~~--~~~~g 271 (897)
++. .... .........+......+++.+|+||+++... ....+...+. ....+
T Consensus 273 --~l~--------~~~~--g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 --EIM--------SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp --HHH--------TSCT--THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred --Hhh--------hhhc--chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 111 1111 1122223334444445667899999994210 0011111111 11234
Q ss_pred cEEEEEeCCch-hhccc----ccce-EeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCC-hHHHH
Q 043332 272 CKLVITTRSLG-VCRFM----DCKE-IGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGL-PLAIV 340 (897)
Q Consensus 272 s~iivTTR~~~-v~~~~----~~~~-~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-Plal~ 340 (897)
..||.||.... +.... .... +.+...+.++-.+++...+.......... ..++++.+.|. +-.+.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLA 412 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHH
Confidence 45666666542 21111 1222 78889999999999987764332211122 24466666664 43343
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.08 E-value=0.00088 Score=65.70 Aligned_cols=113 Identities=21% Similarity=0.138 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCC----CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC
Q 043332 148 KVVERIWEDLMGD----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP 223 (897)
Q Consensus 148 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 223 (897)
..++.+..++... ..+.+.|+|++|+|||+||+.+++... .....++|++++ ++...+.......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHHHHHC---C--
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHHHHHHhccc--
Confidence 3455555665432 127889999999999999999999873 223345666542 3444443322111
Q ss_pred CChhHHHHHHHHHHHHhccCeEEEEEcCCCcc--ccccc--ccc-CCCC-CCCCcEEEEEeCC
Q 043332 224 ENEDEVRRAGRLSGMLKAKAKFVLILDDMWKE--FRLEE--VGI-PEPS-EENGCKLVITTRS 280 (897)
Q Consensus 224 ~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~--~~~~~--~~~-~~~~-~~~gs~iivTTR~ 280 (897)
. . ..+...+.. .-+|||||++.. ..|.. +.. .+.. ...+.++|+||..
T Consensus 105 -~--~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 -T--M----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp -C--C----HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred -h--H----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1 0 112222322 238999999652 22221 211 1111 1235578888874
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.07 E-value=0.0023 Score=67.41 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=34.3
Q ss_pred cccchhhHHHHHHHHHHhcC--------------CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG--------------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+ ++.++.+...+.. ....-+.|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQ--ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSC--HHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCCh--HHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 58887 5666666655532 124567899999999999999999976
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.04 E-value=0.00078 Score=71.24 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHHHhcCC---------CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. +..++.+...+... ....+.++|++|+|||++|+.+++..
T Consensus 18 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSC--HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCH--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 46776 55555555554321 13579999999999999999999986
No 222
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.95 E-value=0.0044 Score=67.84 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=62.9
Q ss_pred cccEEEccccccccCCCCCCCCCCCccEEEccCC--CCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCccccee
Q 043332 498 NLERVSLMKNNIKEIPSYMSPHCDILSTLLLQAN--GNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSL 574 (897)
Q Consensus 498 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L 574 (897)
.++.+.+.. .++.+....|.+|.+|+.+.+..+ ..+..++...|.++..|+.+.+..+ ++.++. .+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 366666653 367777777888888888887654 2356667777777777777666543 444432 35666777777
Q ss_pred eccccccccCCc--chhccccCCEeeccC
Q 043332 575 LLRYCLRLRRVP--SVAKLLALHYLDLEA 601 (897)
Q Consensus 575 ~L~~~~~~~~lp--~~~~l~~L~~L~l~~ 601 (897)
.+.. .+..++ .+..+..|+.+.+..
T Consensus 143 ~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 143 TIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred cccc--eeeeecccceecccccccccccc
Confidence 7754 234444 366666666666644
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.80 E-value=0.0069 Score=67.12 Aligned_cols=172 Identities=14% Similarity=0.126 Sum_probs=89.7
Q ss_pred ccccchhh-HHHHHHHHHHhcCC---------CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHH
Q 043332 139 ATLAGEKT-KKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (897)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 208 (897)
.+++|.+. .+.+.+++..+... -.+-|.|+|++|+|||+||+.+++... .. .+.++.++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~---~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN---VP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT---CC---EEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CC---eeeCCHHHHHHH-
Confidence 46888732 23344444444321 124588999999999999999999752 22 233443332110
Q ss_pred HHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCeEEEEEcCCCccc----------------cccccccCCC--CCCC
Q 043332 209 KLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAKFVLILDDMWKEF----------------RLEEVGIPEP--SEEN 270 (897)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r~LlVlDdv~~~~----------------~~~~~~~~~~--~~~~ 270 (897)
. ..........+........+.+|+||+++... .+..+...+. ....
T Consensus 89 -------------~--~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 -------------F--VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp -------------C--TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred -------------H--hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 01112233344444444568999999996421 0111111110 1123
Q ss_pred CcEEEEEeCCchhhc-c-c--c-cc-eEeccCCCHHHHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 271 GCKLVITTRSLGVCR-F-M--D-CK-EIGVELLSQEEALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 271 gs~iivTTR~~~v~~-~-~--~-~~-~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
+..||.||...+... . . + .. .+.++..+.++-.+++...+.......... ...+++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 556777776654321 1 1 1 12 277888888887778776554321111111 234677777766
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.76 E-value=0.022 Score=57.96 Aligned_cols=49 Identities=29% Similarity=0.257 Sum_probs=32.9
Q ss_pred cccccchhh-HHHHHHHHHHhcCC---------CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 138 TATLAGEKT-KKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 138 ~~~~vGr~~-~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|.+. .+.+.+++.++... ..+-+.|+|++|+||||+|+.+++..
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 347888732 23334444444321 13458899999999999999999875
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.71 E-value=0.0006 Score=70.38 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=32.2
Q ss_pred ccccchhh-HHHHHHHHHHhcC---------CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKT-KKVVERIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+++|.+. .+.+.+++.++.. ...+-+.|+|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 46888632 3334444444332 113347899999999999999999976
No 226
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.63 E-value=0.0067 Score=65.99 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=88.5
Q ss_pred CCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceeeccccccccCCc--ch
Q 043332 512 IPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLLLRYCLRLRRVP--SV 588 (897)
Q Consensus 512 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp--~~ 588 (897)
+....+..+.+|+.+.+..+ +..++...|.++..|+.+.+..+ ++.+.. .+.++.+|+.+.+.. .++.++ .+
T Consensus 208 i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF 282 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC 282 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT
T ss_pred Eeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccc
Confidence 33445556777777777653 55666666777888888887654 554433 356677788777765 355565 47
Q ss_pred hccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 589 AKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 589 ~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
..+.+|+.+.+.++.++.++.. |.++.+|+.+.+..+ ++.++...|.++++|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 7788888888877777776554 777778888887543 666776667777777777664
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.0074 Score=59.79 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=34.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 211 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 211 (897)
..++.|+|.+|+||||||.+++. . . -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence 46899999999999999999988 2 1 2458888877755655544
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.56 E-value=0.0013 Score=78.84 Aligned_cols=59 Identities=15% Similarity=0.288 Sum_probs=39.2
Q ss_pred cccchhhHHHHHHHHHHhcC-------C--CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 140 TLAGEKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
.++|. +..++.+...+.. . ....+.++|++|+|||++|+.+++... ..-...+.+.++.
T Consensus 492 ~viGq--~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 492 RVIGQ--DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TSCSC--HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred cCcCh--HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 58887 5566666655531 1 123699999999999999999999862 2222345555443
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.50 E-value=0.002 Score=67.51 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=30.5
Q ss_pred cccchhhHHHHHHHHHHhcC--CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+ ...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~--s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGS--SPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCC--SHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEC--CHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 46776 3344444444321 223456799999999999999999865
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.016 Score=58.44 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=54.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc---CCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCC-----------CCC-h
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQNEIAAALNQSL-----------PEN-E 226 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----------~~~-~ 226 (897)
-.++.|+|.+|+|||||+++++....... ..-..++|++....++...+. ++++.++... ... .
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999998631110 023578999877765554443 3444443221 001 1
Q ss_pred hHHHHHHHHHHHHhccCeEEEEEcCCCcc
Q 043332 227 DEVRRAGRLSGMLKAKAKFVLILDDMWKE 255 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~~ 255 (897)
........+...+...+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 11112233334443445778899988643
No 231
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.32 E-value=0.014 Score=63.41 Aligned_cols=136 Identities=13% Similarity=0.213 Sum_probs=96.6
Q ss_pred ccccEEEccccccccCCCCCCCCCCCccEEEccCCCCcccCChhHhhCCCCccEEEecCCCCCcCCc-ccccCcccceee
Q 043332 497 ENLERVSLMKNNIKEIPSYMSPHCDILSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTDIEVLPS-SVSDLTNLRSLL 575 (897)
Q Consensus 497 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~ 575 (897)
.+++.+.+.. .+..+....+..|..|+.+.+..+ +..++...|.++..|+.+.+..+ ++.++. .+.++.+|+.+.
T Consensus 217 ~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred cccceeeecc-ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 3455555543 355666677788889999888764 67777788888888999888653 555554 467888999998
Q ss_pred ccccccccCCc--chhccccCCEeeccCCcCcccCcc-ccCCCCCCEEeCCCCCCCcCCCCcccCCc
Q 043332 576 LRYCLRLRRVP--SVAKLLALHYLDLEATRIEEVPEG-MEMLENLSYLYLYSLPLKKFPTGILPRLR 639 (897)
Q Consensus 576 L~~~~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 639 (897)
+.++ .++.++ .|.++.+|+.+.+..+ ++.++.. |.++.+|+.+.+..+ ++.+....|.+.+
T Consensus 293 l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 293 MDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 8764 566666 5888899999988653 6666543 778888888887543 6666665565553
No 232
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.23 E-value=0.0028 Score=65.58 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=41.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe--CCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV--SQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGML 239 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (897)
.+++.|+|++|+||||||.+++... .. .++|+++ .+..+. . ..+.......+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v~~--------------~--~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPLSG--------------Y--NTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSSTT--------------C--BCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhhhh--------------h--hcCHHHHHHHHHHHH
Confidence 3577899999999999999998862 11 2445665 322110 0 012233334444555
Q ss_pred hccCeEEEEEcCCCc
Q 043332 240 KAKAKFVLILDDMWK 254 (897)
Q Consensus 240 ~~~~r~LlVlDdv~~ 254 (897)
.+. + +||+|++..
T Consensus 181 ~~~-~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQH-R-VIVIDSLKN 193 (331)
T ss_dssp HHC-S-EEEEECCTT
T ss_pred hhC-C-EEEEecccc
Confidence 433 4 999999865
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.23 E-value=0.018 Score=60.80 Aligned_cols=92 Identities=14% Similarity=0.250 Sum_probs=56.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc---CCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC---------CChh--
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP---------ENED-- 227 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~-- 227 (897)
..++.|+|.+|+||||||.+++....... ..-..++|++....++..++.. +++.++.... ...+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999999988742110 0135789999888777766553 4455543210 0011
Q ss_pred -HHHHHHHHHHHHhc-cCeEEEEEcCCCc
Q 043332 228 -EVRRAGRLSGMLKA-KAKFVLILDDMWK 254 (897)
Q Consensus 228 -~~~~~~~l~~~l~~-~~r~LlVlDdv~~ 254 (897)
..+....+...+.+ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 11223333334433 4567889998854
No 234
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.026 Score=60.05 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=40.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccC---CCcEEEEEEeCCCCCHHHHHHHHHHHHc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIWVTVSQPLDLIKLQNEIAAALN 219 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 219 (897)
..++.|+|.+|+||||||.+++........ .-..++|++....++...+.. ++..++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 479999999999999999999887421100 235789999888777766543 444444
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.19 E-value=0.027 Score=64.03 Aligned_cols=45 Identities=38% Similarity=0.416 Sum_probs=31.9
Q ss_pred cccchhhHHHHHHHHHHhc------CCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM------GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+++|. +...+.+.+.+. ......+.++|++|+||||||+.++...
T Consensus 82 di~G~--~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGL--EKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSC--HHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccH--HHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57775 444444433221 1235689999999999999999999986
No 236
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.17 E-value=0.018 Score=60.81 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=41.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc---------CCC----cEEEEEEeCCCCCHHHHHHHHHHHHcC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---------NKF----NVVIWVTVSQPLDLIKLQNEIAAALNQ 220 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~vs~~~~~~~~~~~i~~~l~~ 220 (897)
-.++.|+|.+|+||||||.+++....... ..- ..++|++....++..++.. +++.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 47899999999999999999987631110 111 5789999888877776653 4455543
No 237
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.12 E-value=0.0069 Score=55.81 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=30.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
....++|+|..|+|||||++.+++.... .. ..++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g-~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AG-KNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TT-CCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cC-CcEEEEcHHH
Confidence 5578999999999999999999998732 11 1256666544
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.10 E-value=0.013 Score=62.13 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
-+++.|+|++|+||||||.+++..... .-..++|++....++.. .++.++.... ...+..+....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 479999999999999999999988632 22347889887777654 4455543321 1122222333232
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
..+...+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 223234455889999854
No 239
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.08 E-value=0.02 Score=58.85 Aligned_cols=86 Identities=8% Similarity=-0.008 Sum_probs=55.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCC-----ChhHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPE-----NEDEVRRAGRLSGM 238 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 238 (897)
++-|+|.+|+||||||.+++..... ...-..++||+....++.. .+++++..... ..+..+....+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999998887632 2123578999988887764 35666654321 11222220223333
Q ss_pred H---hccCeEEEEEcCCCcc
Q 043332 239 L---KAKAKFVLILDDMWKE 255 (897)
Q Consensus 239 l---~~~~r~LlVlDdv~~~ 255 (897)
+ .+++.-+||+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4556789999998653
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.01 E-value=0.0058 Score=60.06 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcC--CCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 147 KKVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 147 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
++.+++|.+.+.. ....+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456666666653 4568999999999999999999998863
No 241
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.72 E-value=0.011 Score=62.44 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=35.5
Q ss_pred HHHHhcC-CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 153 IWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 153 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
.++.+.. .....++|+|..|+|||||++.+++........++++ ++-+++..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence 3444432 3456899999999999999999988764333344444 57777654
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.68 E-value=0.02 Score=67.31 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|+|||+||++++++.. .+ .+.|+.++ +. + .. .......+..+...-..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg---~~---~~~v~~~~------l~-------s-k~--~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG---AF---FFLINGPE------IM-------S-KL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT---CE---EEEEEHHH------HH-------S-SC--TTHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC---Ce---EEEEEhHH------hh-------c-cc--chHHHHHHHHHHHHHHH
Confidence 56799999999999999999999752 22 34443221 11 1 11 12233344455555445
Q ss_pred cCeEEEEEcCCCccc--------c-----ccccccCCC--CCCCCcEEEEEeCCc-hhhcc---cccc-e-EeccCCCHH
Q 043332 242 KAKFVLILDDMWKEF--------R-----LEEVGIPEP--SEENGCKLVITTRSL-GVCRF---MDCK-E-IGVELLSQE 300 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~--------~-----~~~~~~~~~--~~~~gs~iivTTR~~-~v~~~---~~~~-~-~~l~~L~~~ 300 (897)
..+.+|+||+++... . ...+..... ....+..||.||... .+-.. .+.. . +.+..-+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 678999999986421 0 001111100 012233455565543 22221 1122 2 788888888
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHhCCCh
Q 043332 301 EALNLFLDKVRISTSQILNLDKEIINSVVEECAGLP 336 (897)
Q Consensus 301 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 336 (897)
+-.++|.............+ ...|++++.|.-
T Consensus 376 ~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred HHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 88888876654322211222 345777887764
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.68 E-value=0.013 Score=70.06 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=33.3
Q ss_pred cccchhhHHHHHHHHHHhcC---------CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. ++.++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 459 ~v~g~--~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQ--DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSC--HHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCH--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 57887 5566666555431 123478999999999999999999976
No 244
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.67 E-value=0.0076 Score=62.78 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+.+.++|++|+|||+||+++++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999986
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.65 E-value=0.064 Score=59.77 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=33.0
Q ss_pred ccccchhh-HHHHHHHHHHhcCC---------CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKT-KKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+++|.+. ...+.+++..+... -.+-|.|+|++|+||||||+.+++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888732 23444555554331 12348999999999999999999875
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.65 E-value=0.031 Score=57.40 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=64.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhccCe
Q 043332 165 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKAKAK 244 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~r 244 (897)
+.++|++|+||||||+.++.... . ..+++..++-.+. ........+..+.+......+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~---~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG---L---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT---C---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcC---C---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999752 1 2344543321110 001111223333333223457
Q ss_pred EEEEEcCCCcccc---------c----cccccCCCC--CCCCcEEEEEeCCchhhcc----c-ccce-EeccCCCHHHHH
Q 043332 245 FVLILDDMWKEFR---------L----EEVGIPEPS--EENGCKLVITTRSLGVCRF----M-DCKE-IGVELLSQEEAL 303 (897)
Q Consensus 245 ~LlVlDdv~~~~~---------~----~~~~~~~~~--~~~gs~iivTTR~~~v~~~----~-~~~~-~~l~~L~~~ea~ 303 (897)
.++++|+++.... . ..+...+.. .....-++.+|...++... . .-.. +.++..+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 8999999864210 0 000001111 1223344556665544221 1 1122 677777888888
Q ss_pred HHHHHhh
Q 043332 304 NLFLDKV 310 (897)
Q Consensus 304 ~Lf~~~~ 310 (897)
++|+...
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887654
No 247
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.64 E-value=0.024 Score=60.31 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=52.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
-+++.|+|.+|+||||||.+++..... .-..++|++....++.. .++.++.... ...+..+.. .+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l-~~~ 131 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQAL-EIA 131 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHH-HHH
Confidence 478999999999999999999887632 22458899988776653 2444543211 111222222 223
Q ss_pred HHHh-ccCeEEEEEcCCCc
Q 043332 237 GMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~-~~~r~LlVlDdv~~ 254 (897)
+.+. +.+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 3332 33456899999854
No 248
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.62 E-value=0.025 Score=63.05 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=33.9
Q ss_pred ccccchhhHHHHH---HHHHHhcCCC--eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVE---RIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~---~l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|. ++.++ .+++.+.... .+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~--~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQ--ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESC--HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCH--HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 478998 44444 4444444432 3568899999999999999999986
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.44 E-value=0.032 Score=59.58 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=51.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
.+++.|+|.+|+||||||.+++..... .-..++|++....++.. .++.++.... ...+..+....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 468999999999999999999887632 22468999988776654 2444443211 1112222222222
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
........-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 222233455899999853
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.43 E-value=0.018 Score=69.60 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=33.2
Q ss_pred cccchhhHHHHHHHHHHhcC-------C--CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. +..++.+...+.. . ....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~--~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSC--HHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCc--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46887 5555665555431 1 13578999999999999999999986
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.40 E-value=0.043 Score=65.50 Aligned_cols=127 Identities=10% Similarity=0.121 Sum_probs=67.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
...|.|+|++|+||||||+.+++... .. .+.+..++ +.... .......+..+.+....
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~---~~---~i~v~~~~--------------l~~~~--~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETG---AF---FFLINGPE--------------IMSKL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTT---CE---EEEEEHHH--------------HSSSS--TTHHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC---Cc---EEEEEchH--------------hhhhh--hhhHHHHHHHHHHHHHh
Confidence 46799999999999999999988651 22 23333211 11111 11222333344444434
Q ss_pred cCeEEEEEcCCCcccc-------------ccccc---cCCCCCCCCcEEEEEeCCch-hhccc---c-cce-EeccCCCH
Q 043332 242 KAKFVLILDDMWKEFR-------------LEEVG---IPEPSEENGCKLVITTRSLG-VCRFM---D-CKE-IGVELLSQ 299 (897)
Q Consensus 242 ~~r~LlVlDdv~~~~~-------------~~~~~---~~~~~~~~gs~iivTTR~~~-v~~~~---~-~~~-~~l~~L~~ 299 (897)
....++++|++..... ...+. .... ...+..+|.||...+ +.... + ... +.+...+.
T Consensus 296 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 5678999999853210 01111 1111 122345555665432 21111 1 112 67888888
Q ss_pred HHHHHHHHHhhh
Q 043332 300 EEALNLFLDKVR 311 (897)
Q Consensus 300 ~ea~~Lf~~~~~ 311 (897)
++-.+++...+.
T Consensus 375 ~~r~~il~~~~~ 386 (806)
T 1ypw_A 375 TGRLEILQIHTK 386 (806)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh
Confidence 888888876553
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.40 E-value=0.072 Score=57.62 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhc---cCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----------CC-h
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----------EN-E 226 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----------~~-~ 226 (897)
-.++.|+|.+|+|||||+.+++-..... ...-..++|++....++...+. .+++.++.... .. .
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 4699999999999999999876443110 0123568899877766655443 35555543210 00 1
Q ss_pred hHHHHHHHHHHHHhccCeEEEEEcCCCc
Q 043332 227 DEVRRAGRLSGMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 227 ~~~~~~~~l~~~l~~~~r~LlVlDdv~~ 254 (897)
........+...+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1122233333444345567888998754
No 253
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.39 E-value=0.069 Score=53.06 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=32.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhc--c-CCCcEEEEEEeCCCCCH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE--T-NKFNVVIWVTVSQPLDL 207 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~wv~vs~~~~~ 207 (897)
-.+++|+|++|+|||||++.++...... . .....++|+.-......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4799999999999999999998754211 0 12346788876554443
No 254
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.31 E-value=0.032 Score=59.39 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=51.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
.+++.|+|.+|+||||||.+++..... .-..++|++....++... +..++.... ......+ +..+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~-~~~~~ 133 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQ-ALEIC 133 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHH-HHHHH
Confidence 468999999999999999999887632 223589999887776432 344443211 0111222 22223
Q ss_pred HHHh-ccCeEEEEEcCCCc
Q 043332 237 GMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~-~~~r~LlVlDdv~~ 254 (897)
+.+. ..+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 3332 23445899998753
No 255
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.28 E-value=0.1 Score=55.63 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=93.4
Q ss_pred HhcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHH
Q 043332 156 DLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRL 235 (897)
Q Consensus 156 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 235 (897)
.+.+.-.++..++|..|.||++.|+.+...... ..|+....+.+....++.++...+-
T Consensus 12 ~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-------------------- 69 (343)
T 1jr3_D 12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA--QGFEEHHTFSIDPNTDWNAIFSLCQ-------------------- 69 (343)
T ss_dssp HHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHH--HTCCEEEEEECCTTCCHHHHHHHHH--------------------
T ss_pred HHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHh--CCCCeeEEEEecCCCCHHHHHHHhc--------------------
Confidence 333234679999999999999999999887532 2343222223333344444333221
Q ss_pred HHHHhccCeEEEEEcCCCc-c--ccccccccCCCCCCCCcEEEEEeCC-------chhhccc--ccceEeccCCCHHHHH
Q 043332 236 SGMLKAKAKFVLILDDMWK-E--FRLEEVGIPEPSEENGCKLVITTRS-------LGVCRFM--DCKEIGVELLSQEEAL 303 (897)
Q Consensus 236 ~~~l~~~~r~LlVlDdv~~-~--~~~~~~~~~~~~~~~gs~iivTTR~-------~~v~~~~--~~~~~~l~~L~~~ea~ 303 (897)
...+ -+.+-++|+|++.. . ..++.+...+.....++.+|++|.. ..+.... .+..++..+++.++..
T Consensus 70 ~~pl-f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 70 AMSL-FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLP 148 (343)
T ss_dssp HHHH-CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHH
T ss_pred CcCC-ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHH
Confidence 0112 24456889999865 2 3334443333322456777766643 1232222 2233888999999988
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHhCCChHHHHH
Q 043332 304 NLFLDKVRISTSQILNLDKEIINSVVEECAGLPLAIVT 341 (897)
Q Consensus 304 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G~Plal~~ 341 (897)
..+.+.+..... .-..+.+..+++.++|...++..
T Consensus 149 ~~l~~~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 149 RWVAARAKQLNL---ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHTTC---EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHcCC---CCCHHHHHHHHHHhchHHHHHHH
Confidence 888776643321 11245677899999999887755
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.24 E-value=0.04 Score=54.95 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=28.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
-.+++|+|.+|+|||||++.++...... -..+.|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 3689999999999999999999765322 12466766543
No 257
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.21 E-value=0.026 Score=59.00 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCC---CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 148 KVVERIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 148 ~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..++.+.+++... ....+.|+|+.|+|||+||+++++...
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444455555431 246789999999999999999999863
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.95 E-value=0.024 Score=55.25 Aligned_cols=40 Identities=18% Similarity=0.405 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcC---CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 147 KKVVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 147 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++.++.+.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445566665543 346799999999999999999998875
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.89 E-value=0.092 Score=54.19 Aligned_cols=56 Identities=16% Similarity=0.035 Sum_probs=34.9
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
....+|+|+|..|+||||||+.+.............+..|+...-+-..+....+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 45689999999999999999999887632110122344445444333334444443
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.77 E-value=0.017 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|.|.|+.|+||||+|+.++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999875
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.74 E-value=0.016 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999875
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.69 E-value=0.17 Score=55.04 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...+|.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999998774
No 263
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.56 E-value=0.051 Score=48.49 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=15.4
Q ss_pred ccEEEccCCCCcccCChhHhhCCCCccEEEecCCC
Q 043332 523 LSTLLLQANGNLWTIPECFFVHMHGLKVLNLSHTD 557 (897)
Q Consensus 523 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 557 (897)
|+.|+|++| .+..++...|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 444444444 3444444444444444444444443
No 264
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.56 E-value=0.12 Score=54.86 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=33.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCC---CcEEEEEEeCCCCCHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIK 209 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~ 209 (897)
-.++.|+|..|+|||||+.+++......... -..++|++....+....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 5799999999999999999999875211011 13568888766554333
No 265
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.52 E-value=0.14 Score=55.86 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=56.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHHHcCC------C------CCChhH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAALNQS------L------PENEDE 228 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~------~~~~~~ 228 (897)
-..++|+|..|+|||+|+..+++... +.+-+.++++-+++... ..++.+++...=... . ..+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 46789999999999999999998752 23446678888887643 445666665431111 0 001111
Q ss_pred HH------HHHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 229 VR------RAGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 229 ~~------~~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
.. ..-.+-+++. +++.+||++||+..
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11 1122233443 47899999999853
No 266
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.52 E-value=0.02 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|.|+|+.|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 267
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.49 E-value=0.0069 Score=55.42 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=27.8
Q ss_pred cccchhhHHHHHHHHHHhc---CCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+ ...++++.+.+. ... .-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~--s~~~~~l~~~~~~~~~~~-~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGN--SAAIQEMNREVEAAAKRT-SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CC--CHHHHHHHHHHHHHHTCS-SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeC--CHHHHHHHHHHHHHhCCC-CcEEEECCCCccHHHHHHHHHHhC
Confidence 56776 334444444432 223 346799999999999999988764
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.46 E-value=0.018 Score=54.57 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.9
Q ss_pred eEEEEEcCCCchHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEI 182 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v 182 (897)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.44 E-value=0.019 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
..+|+|+|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 270
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.44 E-value=0.024 Score=55.13 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=25.5
Q ss_pred cCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 158 MGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 158 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
......+|+|+|+.|+||||+|+.++...
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456899999999999999999999886
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.36 E-value=0.019 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999875
No 272
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.34 E-value=0.34 Score=50.76 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=36.3
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC-CCCHHHHHHHHHHHHc
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQNEIAAALN 219 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~ 219 (897)
....+++|+|+.|+||||+++.++...... . ..+.++...- .....+-+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~-g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--G-FSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--T-CCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--C-CEEEEEeecccccchHHHHHHHHHHcC
Confidence 346899999999999999999999887432 2 2344444322 1233344445555554
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.34 E-value=0.024 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+.|.|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.34 E-value=0.022 Score=54.35 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998864
No 275
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.33 E-value=0.1 Score=54.06 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=28.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 201 (897)
...+|+|+|.+|+||||++..++.......+ ..+..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEec
Confidence 3579999999999999999999988732222 23555554
No 276
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.33 E-value=0.11 Score=56.81 Aligned_cols=89 Identities=18% Similarity=0.367 Sum_probs=50.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHHH--HcC-----CCCCChhHHHH---
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAAA--LNQ-----SLPENEDEVRR--- 231 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~--l~~-----~~~~~~~~~~~--- 231 (897)
..++|+|..|+|||||++.+....... ..+..+++-+++... ..++..++... +.. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 358999999999999999999876322 223456666666542 33444444321 000 01111111111
Q ss_pred --HHHHHHHHh--ccCeEEEEEcCCC
Q 043332 232 --AGRLSGMLK--AKAKFVLILDDMW 253 (897)
Q Consensus 232 --~~~l~~~l~--~~~r~LlVlDdv~ 253 (897)
.-.+.+++. +++++|+++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 112333333 4889999999985
No 277
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.33 E-value=0.025 Score=55.07 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+|+|+|+.|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 346799999999999999999999875
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.29 E-value=0.024 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINN 184 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~ 184 (897)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.27 E-value=0.19 Score=54.63 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
.++|.++|.+|+||||++..++....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998874
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.12 E-value=0.023 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.06 E-value=0.03 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|.|.|+.|+||||+|+.++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.04 E-value=0.042 Score=54.56 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 150 VERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 150 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444444567899999999999999999998875
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.97 E-value=0.032 Score=56.57 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|.|+|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999875
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.95 E-value=0.033 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|+|+.|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998864
No 285
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.95 E-value=0.063 Score=51.20 Aligned_cols=117 Identities=21% Similarity=0.118 Sum_probs=58.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC---CCCHHHHHHHHHHH---HcCCCC-CChh---HH--
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQNEIAAA---LNQSLP-ENED---EV-- 229 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~---l~~~~~-~~~~---~~-- 229 (897)
-..|-|++..|.||||.|-..+-+.. .+--.+.++..-. ..+...++..+.-. .+..+. ...+ ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 35667777777999999998888763 2333455554333 23334444433100 000010 1111 11
Q ss_pred --HHHHHHHHHHhccCeEEEEEcCCCcc-----ccccccccCCCCCCCCcEEEEEeCCc
Q 043332 230 --RRAGRLSGMLKAKAKFVLILDDMWKE-----FRLEEVGIPEPSEENGCKLVITTRSL 281 (897)
Q Consensus 230 --~~~~~l~~~l~~~~r~LlVlDdv~~~-----~~~~~~~~~~~~~~~gs~iivTTR~~ 281 (897)
.......+.+..++-=|||||++-.. ...+++...+.....+..||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 12222333443455569999998432 12222222222223456899999984
No 286
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.93 E-value=0.15 Score=51.05 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=29.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
-.++.|+|.+|+||||||.+++..... .-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 468999999999999999988776532 124577887554
No 287
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.91 E-value=0.029 Score=54.69 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998864
No 288
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.89 E-value=0.031 Score=53.11 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 289
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.88 E-value=0.22 Score=52.07 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++.|.|.+|+||||+|.+++..... .+ ..++|++... +..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECCC--CHHHHHHHHHHH
Confidence 468999999999999999999987632 22 5788887663 455666555544
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.88 E-value=0.033 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|.|.|+.|+||||+|+.++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999976
No 291
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.87 E-value=0.037 Score=54.69 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 148 KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 148 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+..+.+...+.....++|.|+|.+|+|||||+..+....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344444444444567899999999999999999998875
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.87 E-value=0.029 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|.|+|++|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 293
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.85 E-value=0.029 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 294
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.81 E-value=0.034 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINN 184 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~ 184 (897)
.+++|+|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.77 E-value=0.037 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 296
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.77 E-value=0.028 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999875
No 297
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.75 E-value=0.16 Score=55.63 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=40.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEIAA 216 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~ 216 (897)
-..++|+|..|+|||+|+..+.+... +.+-+.++++-+++... ..++..++..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 45689999999999999999999752 23457788888887654 4456666654
No 298
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.73 E-value=0.044 Score=52.50 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...+|.|.|++|+||||+++.++....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999863
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.72 E-value=0.038 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.69 E-value=0.037 Score=53.86 Aligned_cols=23 Identities=48% Similarity=0.796 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999976
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.65 E-value=0.04 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998875
No 302
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.64 E-value=0.13 Score=66.20 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=55.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCC-----ChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPE-----NEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 236 (897)
.++|-|+|++|+|||+||.+++.... ..-..++|+++...++... ++.++.+... .....+....+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 57899999999999999999988763 2334588888888777665 4455532211 112223333333
Q ss_pred HHHhccCeEEEEEcCCC
Q 043332 237 GMLKAKAKFVLILDDMW 253 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~ 253 (897)
+...+.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 33334567799999985
No 303
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.64 E-value=0.038 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 304
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.64 E-value=0.27 Score=50.94 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=28.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEe
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 201 (897)
...+|.|+|.+|+||||++..++...... -..+.++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcc
Confidence 35799999999999999999999887422 223555554
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.61 E-value=0.035 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINN 184 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~ 184 (897)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.60 E-value=0.046 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
...+|+|+|+.|+||||+|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.58 E-value=0.039 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|+|+|+.|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 308
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.58 E-value=0.032 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 309
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.57 E-value=0.17 Score=52.44 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=46.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHH--HHHHHHHHHcCCCC---CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK--LQNEIAAALNQSLP---ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 236 (897)
..+++|+|.+|+||||++..++...... -..+.++...- ..... .+..+....+...- ...+.........
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCc-ccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999999887422 22355555432 22221 22334444432211 1122223323333
Q ss_pred HHHhccCeEEEEEcCC
Q 043332 237 GMLKAKAKFVLILDDM 252 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv 252 (897)
........=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3332223447888876
No 310
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.55 E-value=0.074 Score=55.85 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHHHHHHHh----cCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 147 KKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 147 ~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+...+++++.+ ..+....|.|+|+.|+||||+++.++...
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 33444444443 34556779999999999999999998876
No 311
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.55 E-value=0.26 Score=53.85 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=29.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeC
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 202 (897)
..++|.++|.+|+||||++..++...... .-..+.-|+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK--HKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT--SCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEEecC
Confidence 36799999999999999999999887422 12235555543
No 312
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.55 E-value=0.046 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+||.|.|++|+||||.|+.++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999886
No 313
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.54 E-value=0.031 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEIN 183 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~ 183 (897)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.51 E-value=0.044 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 315
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.50 E-value=0.11 Score=46.19 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=40.3
Q ss_pred CEeeccCCcCc--ccCccccCCCCCCEEeCCCCCCCcCCCCcccCCcccCeEecc
Q 043332 595 HYLDLEATRIE--EVPEGMEMLENLSYLYLYSLPLKKFPTGILPRLRDLYKLKLS 647 (897)
Q Consensus 595 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (897)
..++.+++.++ .+|..+- .+|++|+|++|.++.+|.+.|..+++|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 36667777777 7776643 468889999998888888888888888888887
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.49 E-value=0.039 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998864
No 317
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.47 E-value=0.038 Score=56.48 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=28.5
Q ss_pred cccchhhHHHHHHHHHHhc--CCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+ ...+.++.+.+. .....-|.|+|..|+|||++|+.+++..
T Consensus 7 ~~ig~--~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGE--ANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CC--CHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeC--CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 47786 334444443332 1122457799999999999999999875
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.45 E-value=0.035 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|.|+|+.|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998875
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.45 E-value=0.066 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998864
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.44 E-value=0.047 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999865
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.42 E-value=0.044 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|.|+.|+||||+|+.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 322
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.41 E-value=0.045 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.354 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
...+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999874
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.40 E-value=0.052 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|.|+.|+||||+|+.++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998864
No 324
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.36 E-value=0.045 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 325
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.33 E-value=0.036 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3678999999999999999998865
No 326
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.32 E-value=0.04 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 327
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.32 E-value=0.071 Score=57.36 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=33.3
Q ss_pred cccchhhHHHHHHHHHHhc-------------C--CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLM-------------G--DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. +..++.+...+. . ...+.|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQ--EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSC--HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCH--HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46887 556666665551 1 123568999999999999999999875
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.28 E-value=0.052 Score=50.71 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..++++|+|..|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 357899999999999999999998863
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.25 E-value=0.2 Score=51.81 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=48.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC-CCHHHHHHHHHHHHcCCCC---CChhHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQNEIAAALNQSLP---ENEDEVRRAGRLSG 237 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 237 (897)
..+|+++|.+|+||||++..++...... -..+.++...-. ....+.++......+...- ...+..........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887422 234566654432 2222333444444443211 11233333334444
Q ss_pred HHhccCeEEEEEcCC
Q 043332 238 MLKAKAKFVLILDDM 252 (897)
Q Consensus 238 ~l~~~~r~LlVlDdv 252 (897)
.+.....=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443222236778865
No 330
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.24 E-value=0.051 Score=57.62 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=33.7
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+ ++.++.+...+... .-+.++|++|+|||+||+.+++..
T Consensus 28 ~i~g~--~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 28 VVVGQ--KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCSC--HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred ceeCc--HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 57887 56667666666543 357899999999999999999875
No 331
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.24 E-value=0.048 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|+|+.|+||||+++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999765
No 332
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.23 E-value=0.051 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999999875
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.22 E-value=0.043 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINN 184 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~ 184 (897)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.21 E-value=0.052 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|.|.|+.|+||||+|+.++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999986
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.17 E-value=0.054 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.15 E-value=0.048 Score=53.28 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|+|+.|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988753
No 337
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.15 E-value=0.031 Score=58.94 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHHHhcC-CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 152 RIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 152 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
++++.+.. .....++|+|..|+|||+|++++++........+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 34555543 335678999999999999999999986432234444 45666654
No 338
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.15 E-value=0.43 Score=50.08 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=37.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++.|.|.+|+||||+|..++..... .-..++|++... +..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm--s~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM--SAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC--CHHHHHHHHHHH
Confidence 368999999999999999999988642 334677877643 455666665544
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.13 E-value=0.071 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999875
No 340
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.10 E-value=0.053 Score=52.12 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999865
No 341
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.09 E-value=0.049 Score=53.24 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999865
No 342
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.08 E-value=0.052 Score=58.01 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=32.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 139 ATLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++|. +..+..+..........-|.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~--~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQ--EDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSC--HHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccCh--HHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 468997 4444444333333233348899999999999999999975
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.06 E-value=0.056 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 344
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.06 E-value=0.67 Score=51.54 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..++|.|+|.+|+||||++..++....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999998774
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.05 E-value=0.055 Score=52.12 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.05 E-value=0.041 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=18.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|.|+.|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998875
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.02 E-value=0.058 Score=51.86 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999998863
No 348
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.98 E-value=0.057 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|.|+.|+||||+|+.++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.96 E-value=0.056 Score=56.46 Aligned_cols=42 Identities=26% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeC
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 202 (897)
....+|+|+|..|+|||||++.+..-.....+. ..+.+|.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-PRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-CCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-CeEEEEecC
Confidence 346799999999999999999999876321111 235555543
No 350
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.96 E-value=0.46 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..+|.|+|.+|+||||++..++....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999998874
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.95 E-value=0.058 Score=54.36 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 352
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.90 E-value=0.1 Score=50.03 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=27.8
Q ss_pred HHHHHHHhcCC-CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 150 VERIWEDLMGD-KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 150 ~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+..+..++.+- ....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44455555431 23479999999999999999999986
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.85 E-value=0.059 Score=54.84 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|.|.|++|+||||+|+.++...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 354
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.85 E-value=0.089 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+.++|++|+|||++|+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 355
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.74 E-value=0.049 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998864
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.73 E-value=0.054 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
|.|.|+|+.|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998875
No 357
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.70 E-value=0.04 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999886
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.69 E-value=0.064 Score=52.51 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=25.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcE
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 195 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 195 (897)
..+|+|.|+.|+||||+|+.+..... ...++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999998763 234554
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.66 E-value=0.062 Score=54.37 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999775
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.65 E-value=0.067 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.62 E-value=0.069 Score=52.72 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 362
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.60 E-value=0.062 Score=56.13 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=29.4
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeC
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 202 (897)
++.+||+|.|-||+||||.|..++--.... + ..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~-G--kkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-G--KRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-T--CCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC-C--CeEEEEecC
Confidence 457999999999999999998888877432 2 235555554
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.59 E-value=0.084 Score=54.84 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...+|+|+|++|+||||+++.++....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999998874
No 364
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.53 E-value=0.07 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999986
No 365
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.52 E-value=0.053 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.8
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988863
No 366
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.48 E-value=0.066 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+++|+|+.|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 5789999999999999999999875
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.44 E-value=0.068 Score=53.07 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...|.|.|+.|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999865
No 368
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.44 E-value=0.064 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998763
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.41 E-value=0.076 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.36 E-value=0.078 Score=53.65 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.22 E-value=0.078 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.21 E-value=0.081 Score=50.23 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.19 E-value=0.11 Score=54.05 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..+++|+|+.|+||||+++.++....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999874
No 374
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.16 E-value=0.33 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..+++|+|.+|+|||||++.++....
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 57999999999999999999998763
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.12 E-value=0.088 Score=51.22 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+|.|.|++|+||+|.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999986
No 376
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.12 E-value=0.09 Score=51.49 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999876
No 377
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.09 E-value=0.074 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+.|+|++|+||||||+.+++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
No 378
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.07 E-value=0.076 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...|.|.|+.|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.06 E-value=0.08 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998864
No 380
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.03 E-value=0.098 Score=52.56 Aligned_cols=26 Identities=19% Similarity=0.136 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|.|.|+.|+||||+|+.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999875
No 381
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.00 E-value=0.083 Score=52.82 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.. .+++|+|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999998754
No 382
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.99 E-value=0.64 Score=51.24 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=37.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
..++.|.|.+|+||||+|.+++..... ..-..++|++... +...+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCC--CHHHHHHHHHHH
Confidence 468999999999999999999988632 1223578877654 455666655543
No 383
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.97 E-value=0.086 Score=58.81 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=33.2
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+ +..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 23 ~ivGq--~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYER--SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSC--HHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHH--HHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 47887 56666666655443 357899999999999999999875
No 384
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.88 E-value=0.078 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999876
No 385
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.85 E-value=0.08 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
-.+++|+|+.|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999999843
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.83 E-value=0.098 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+|+.++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 387
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.82 E-value=0.095 Score=54.90 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.4
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999875
No 388
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.76 E-value=0.13 Score=53.73 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|.|..|+||||+|+.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999998875
No 389
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.76 E-value=0.1 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=22.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|+|.|+.|+||||+|+.++...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999875
No 390
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.73 E-value=0.095 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINN 184 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~ 184 (897)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 391
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.70 E-value=0.061 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=16.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHH-HHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEIN-NRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 186 (897)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 392
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.69 E-value=0.19 Score=54.44 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=52.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCc----EEEEEEeCCCC-CHHHHHHHHHHH--HcC-----CCCCChhHH-
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFN----VVIWVTVSQPL-DLIKLQNEIAAA--LNQ-----SLPENEDEV- 229 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~~~~~- 229 (897)
..++|+|..|+|||+|+.++++... .+.+ .++++-+++.. ...++.+++... +.. ...+.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~---~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQAT---VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB---CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHH---hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 4578999999999999999998742 2223 56677777543 344555555432 110 111111111
Q ss_pred ----HHHHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 230 ----RRAGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 230 ----~~~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
.....+-+++. .++.+|+++||+..
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11222334554 37899999999853
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.66 E-value=0.1 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++++|+|..|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 394
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.65 E-value=0.075 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999988754
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.61 E-value=0.1 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...+|+|+|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999865
No 396
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.60 E-value=0.078 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 397
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.52 E-value=0.078 Score=51.72 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKF 193 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f 193 (897)
-.+++|+|+.|.|||||++.++.- ....+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 468999999999999999999886 4444443
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.51 E-value=0.11 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.49 E-value=0.11 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..|.|.|+.|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 400
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.49 E-value=0.2 Score=53.48 Aligned_cols=36 Identities=22% Similarity=0.563 Sum_probs=28.2
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 151 ERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 151 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++..+. .....+|+|+|.+|+|||||+..+....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 3457899999999999999999998876
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.46 E-value=0.11 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINN 184 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~ 184 (897)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.46 E-value=0.31 Score=50.48 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=33.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
-.+++|+|.+|+|||||++.++...... .-..++|++... +..++...+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHH
Confidence 4689999999999999999999886422 122466766443 3344444443
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.42 E-value=0.11 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.|.|.|+.|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 404
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.35 E-value=0.057 Score=53.12 Aligned_cols=114 Identities=16% Similarity=-0.011 Sum_probs=58.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCC--hhHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPEN--EDEVRRAGRLSGM 238 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 238 (897)
...++.|+|..|+||||++..++++.... .. .++.+....... ....|+..++...... ....+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DV-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TC-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CC-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 35789999999999999999998887321 22 244443322211 1123344444322110 1111112222222
Q ss_pred HhccCeEEEEEcCCCcc--ccccccccCCCCCCCCcEEEEEeCCchh
Q 043332 239 LKAKAKFVLILDDMWKE--FRLEEVGIPEPSEENGCKLVITTRSLGV 283 (897)
Q Consensus 239 l~~~~r~LlVlDdv~~~--~~~~~~~~~~~~~~~gs~iivTTR~~~v 283 (897)
+..++.-+||+|.+..- +.++.+. .+. ..|..||+|.+..+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~--~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILA--ENGFVVIISGLDKNF 128 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHH--HTTCEEEEECCSBCT
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHH--hCCCeEEEEeccccc
Confidence 21233459999999752 2222221 111 236789999986543
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.34 E-value=0.15 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..+++|+|+.|+||||+++.++....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 57999999999999999999999873
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.30 E-value=0.11 Score=56.65 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHHHHhcC--------------CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMG--------------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. ++.++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 16 ~IvGq--e~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 16 HIIGQ--ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TCCSC--HHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCH--HHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 57887 5555555444411 123568899999999999999999976
No 407
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.27 E-value=0.1 Score=53.68 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+.|+|++|+||||||+.+++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999999875
No 408
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.20 E-value=0.091 Score=52.49 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.20 E-value=0.12 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999875
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.19 E-value=0.12 Score=51.48 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...|.|.|+.|+||||+|+.++...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999886
No 411
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.12 E-value=0.091 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999997653
No 412
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.10 E-value=0.11 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
-.+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999884
No 413
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.09 E-value=0.82 Score=51.37 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=37.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAA 217 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 217 (897)
-.++.|.|.+|+||||||.+++..... .+-..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 468899999999999999999988632 1234578887655 355666655443
No 414
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.05 E-value=0.26 Score=49.45 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=28.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
-.++.|.|.+|+|||++|.+++.+... ..-..+++++...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~--~~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE--EYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH--HHCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCceeecccC
Confidence 468999999999999999987655322 1223466776554
No 415
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.02 E-value=0.46 Score=55.92 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=44.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHhc
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPENEDEVRRAGRLSGMLKA 241 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (897)
.+-|.++|++|.|||.+|+++++... .. ++.++. .+++ .. +. . .....+..+...-.+
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~---~~-----f~~v~~----~~l~-------s~-~v-G-ese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ---AN-----FISIKG----PELL-------TM-WF-G-ESEANVREIFDKARQ 568 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTT---CE-----EEECCH----HHHH-------TT-TC-S-SCHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhC---Cc-----eEEecc----chhh-------cc-cc-c-hHHHHHHHHHHHHHH
Confidence 35578999999999999999999852 11 233321 1111 11 11 1 113345566665555
Q ss_pred cCeEEEEEcCCCc
Q 043332 242 KAKFVLILDDMWK 254 (897)
Q Consensus 242 ~~r~LlVlDdv~~ 254 (897)
..+++|+||+++.
T Consensus 569 ~~P~IifiDEiDs 581 (806)
T 3cf2_A 569 AAPCVLFFDELDS 581 (806)
T ss_dssp TCSEEEECSCGGG
T ss_pred cCCceeechhhhH
Confidence 6789999999864
No 416
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.00 E-value=0.095 Score=53.22 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 417
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.96 E-value=0.078 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 418
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.94 E-value=0.18 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
..++|+|+|.+|+||||++..++....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998874
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.93 E-value=0.099 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 420
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.93 E-value=0.084 Score=51.69 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 421
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.92 E-value=0.12 Score=49.54 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998764
No 422
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.87 E-value=0.46 Score=61.21 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=54.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
.+++.|+|.+|+||||||.+++..... .-..++|++.....+... ++.++.... +..+..+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 469999999999999999999988732 234689998888776542 455554321 1122222222222
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
....+.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 222234456999998754
No 423
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.87 E-value=0.1 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999988754
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.86 E-value=0.1 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||++.++.-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 425
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.85 E-value=0.12 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
-.+++|+|+.|.|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999884
No 426
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.85 E-value=0.1 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998864
No 427
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.83 E-value=0.55 Score=51.87 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=36.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC-HHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQNEI 214 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 214 (897)
-..++|.|..|+|||+|+.++++.. +-+.++++-+++..+ ..++..++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4678999999999999999988752 335788888887765 34455543
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.82 E-value=0.1 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 429
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.80 E-value=0.23 Score=50.96 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=30.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccC-------CCcEEEEEEeCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETN-------KFNVVIWVTVSQP 204 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~vs~~ 204 (897)
-.++.|+|.+|+|||||+.+++........ .-..+++++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 468999999999999999999986532100 0134667766554
No 430
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.80 E-value=0.48 Score=52.44 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=35.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
..++.|.|.+|+||||||.+++...... .-..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 4689999999999999999999886422 123578887554 3345555443
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.77 E-value=0.13 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998865
No 432
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.72 E-value=0.11 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997754
No 433
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.63 E-value=0.11 Score=52.23 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998764
No 434
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.63 E-value=0.11 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 435
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.63 E-value=0.16 Score=58.54 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=35.0
Q ss_pred cccchhhHHHHHHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 140 TLAGEKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 140 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|. +..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~--~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQ--EHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSC--HHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECc--hhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 68897 56666666666554 588999999999999999999975
No 436
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.48 E-value=0.15 Score=51.74 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..-.+++|+|+.|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345799999999999999999998876
No 437
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.48 E-value=0.13 Score=53.74 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999865
No 438
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.41 E-value=0.12 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998764
No 439
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.38 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||++.++.-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998753
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.36 E-value=0.14 Score=52.87 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999998865
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.35 E-value=0.28 Score=48.66 Aligned_cols=27 Identities=37% Similarity=0.454 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...+|.|.|+.|+||||+++.++....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999999873
No 442
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.31 E-value=0.12 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|+|||||++.++.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.31 E-value=0.16 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5789999999999999999999875
No 444
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.24 E-value=0.12 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+++|+|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998764
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.23 E-value=0.12 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+++|+|+.|+|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 446
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.17 E-value=0.12 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||++.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998764
No 447
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.16 E-value=0.16 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 448
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.15 E-value=0.42 Score=47.43 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=28.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEE
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (897)
...|.|.|+.|+||||+++.++.... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 46899999999999999999999873 23455344443
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.03 E-value=0.16 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999884
No 450
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.00 E-value=0.27 Score=53.23 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=51.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc-------CCCc-EEEEEEeCCCC-CHHHHHHHHHHH--HcC-----CCCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET-------NKFN-VVIWVTVSQPL-DLIKLQNEIAAA--LNQ-----SLPEN 225 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~~~~~ 225 (897)
-..++|+|..|+|||+|+.++++...... ++-+ .++++-+++.. ...++..++... +.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 34578999999999999999988742100 1112 56667776543 344555554331 110 01111
Q ss_pred hhH-----HHHHHHHHHHHh--ccCeEEEEEcCCCc
Q 043332 226 EDE-----VRRAGRLSGMLK--AKAKFVLILDDMWK 254 (897)
Q Consensus 226 ~~~-----~~~~~~l~~~l~--~~~r~LlVlDdv~~ 254 (897)
... ......+-+++. +++.+|+++||+..
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 111222334554 37899999999853
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.99 E-value=0.18 Score=46.39 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999875
No 452
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.97 E-value=0.47 Score=46.25 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=32.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIA 215 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 215 (897)
..|.|.|+.|+||||+++.++..... ..+..+.+..-.....+.+..++++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~--~~~~~v~~~rep~~t~~g~~ir~~l 54 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ--LGIRDMVFTREPGGTQLAEKLRSLL 54 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCCcceeeeCCCCCHHHHHHHHHH
Confidence 57899999999999999999998732 3342334333333322334444444
No 453
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.93 E-value=0.42 Score=60.68 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCC-----CChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLP-----ENEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (897)
-+++.|+|.+|+||||||.+++..... .-..++|++.....+... ++.++.... ...+..+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 478999999999999999999888632 234689999888776542 455554321 1112222222232
Q ss_pred HHHhccCeEEEEEcCCCc
Q 043332 237 GMLKAKAKFVLILDDMWK 254 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~~ 254 (897)
....+.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 222234456999999864
No 454
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.92 E-value=0.16 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 455
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.91 E-value=0.16 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.500 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.75 E-value=0.21 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+|+|.|+.|+||||+++.++...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999999865
No 457
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.71 E-value=0.38 Score=48.30 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCC-C-eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 147 KKVVERIWEDLMGD-K-VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 147 ~~~~~~l~~~L~~~-~-~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.....-+..|+... . ..-|.++|++|+|||.+|.++++..
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44455677788764 3 4579999999999999999999863
No 458
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.70 E-value=0.4 Score=50.76 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=33.8
Q ss_pred hcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCC
Q 043332 157 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (897)
Q Consensus 157 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 205 (897)
+.+...+++.+.|-||+||||+|..++...... ..-..+.-|+.....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~ 60 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAH 60 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSC
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCC
Confidence 345567899999999999999999999887410 122346666665443
No 459
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.68 E-value=0.21 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..++.+.|.||+||||++..++...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999999876
No 460
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.60 E-value=0.19 Score=48.07 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=33.7
Q ss_pred hhCCCCccEEEecCC-CCCc-----CCcccccCcccceeeccccccccCCc------chhccccCCEeeccCCcCc
Q 043332 542 FVHMHGLKVLNLSHT-DIEV-----LPSSVSDLTNLRSLLLRYCLRLRRVP------SVAKLLALHYLDLEATRIE 605 (897)
Q Consensus 542 ~~~l~~Lr~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~lp------~~~~l~~L~~L~l~~~~l~ 605 (897)
..+-+.|+.|+|+++ .|.. +-+.+..-.+|+.|+|++|. +.+-. .+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 455677888888875 5541 23334445566677776653 22111 1223345555555555543
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.53 E-value=0.17 Score=55.41 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998764
No 462
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.34 E-value=0.26 Score=51.43 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
...++|+|+|-||+||||+|..++...... + ..+.-|+..-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G--~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-G--KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-T--CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC-C--CeEEEEeCCC
Confidence 457899999999999999999999887432 2 2456666543
No 463
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.31 E-value=0.56 Score=51.36 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=50.0
Q ss_pred eeEEEEEcCCCchHHHHH-HHHHHHHhhccCCCc-EEEEEEeCCCCC-HHHHHHHHHHHHcC-------CCCCChhHHH-
Q 043332 162 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFN-VVIWVTVSQPLD-LIKLQNEIAAALNQ-------SLPENEDEVR- 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~- 230 (897)
-..++|+|..|+|||+|| ..+++.. .-+ .++++-+++... ..++.+++...=.. ...+......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 456899999999999995 5777753 234 346777776543 44555555432111 1111111111
Q ss_pred ----HHHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 231 ----RAGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 231 ----~~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
....+-+++. +++.+|+++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1112223333 57899999999853
No 464
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.27 E-value=0.16 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998764
No 465
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.19 E-value=1 Score=49.39 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=31.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCC
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 204 (897)
..++.|.|.+|+||||+|.+++...... -..++|++....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms 236 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMG 236 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCC
Confidence 4689999999999999999999887422 346788776544
No 466
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.18 E-value=0.15 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34689999999999999999997754
No 467
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.17 E-value=0.14 Score=48.71 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998773
No 468
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.15 E-value=0.53 Score=51.60 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=50.1
Q ss_pred eeEEEEEcCCCchHHHHH-HHHHHHHhhccCCCcE-EEEEEeCCCCC-HHHHHHHHHHHHc-------CCCCCChhHHH-
Q 043332 162 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNV-VIWVTVSQPLD-LIKLQNEIAAALN-------QSLPENEDEVR- 230 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~-~~wv~vs~~~~-~~~~~~~i~~~l~-------~~~~~~~~~~~- 230 (897)
-..++|+|..|+|||+|| .++++.. .-+. ++++-+++... ..++.+++...=. ....+......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 356899999999999995 5777753 2343 46777776543 4455555543210 01111111111
Q ss_pred ----HHHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 231 ----RAGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 231 ----~~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
....+-+++. +++.+|+++||+..
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 1112223333 57899999999853
No 469
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.13 E-value=0.2 Score=53.59 Aligned_cols=27 Identities=22% Similarity=0.008 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
....+++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 446799999999999999999999864
No 470
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.13 E-value=0.13 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
...+|+|.|..|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998775
No 471
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.12 E-value=0.33 Score=52.86 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhcc-CCCcEEEEEEeCCCC-CHHHHHHHHHHHHcC-------CCCCChhH----
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQPL-DLIKLQNEIAAALNQ-------SLPENEDE---- 228 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~---- 228 (897)
-..++|+|..|+|||+|+.+++++..... +.-+.++++-+++.. ...++..++...=.. ...+....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 35678899999999999999999852111 112456777777654 344556555443110 11111111
Q ss_pred -HHHHHHHHHHHh--ccCeEEEEEcCCC
Q 043332 229 -VRRAGRLSGMLK--AKAKFVLILDDMW 253 (897)
Q Consensus 229 -~~~~~~l~~~l~--~~~r~LlVlDdv~ 253 (897)
......+-+++. +++.+|+++||+.
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111222334444 5799999999974
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.05 E-value=0.23 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=22.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
++|.|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 473
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.01 E-value=0.65 Score=45.29 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
...|.|.|+.|+||||+++.+.....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999999873
No 474
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.00 E-value=0.18 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+.|.|.|+.|+||||||..++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998764
No 475
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.97 E-value=0.42 Score=46.65 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=26.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCC
Q 043332 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 203 (897)
.|.+.|.||+||||+|..++..... ..++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~--~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR--QGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH--TTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCC-EEEEEeCC
Confidence 4788999999999999999988632 2333 44444443
No 476
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.90 E-value=0.49 Score=49.73 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=34.1
Q ss_pred hcCCCeeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCC
Q 043332 157 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (897)
Q Consensus 157 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 206 (897)
+.+...+++.+.|-||+||||+|..++..... .-..+.-|+.....+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~---~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK---VRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTT---SSSCEEEEECCSSCH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHh---CCCcEEEEECCCCCC
Confidence 34455788889999999999999999988742 233466676664443
No 477
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.85 E-value=0.22 Score=46.00 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 043332 164 KIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 164 vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.84 E-value=0.57 Score=59.53 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=57.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCHHHHHHHHHHHHcCCCCC-----ChhHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQNEIAAALNQSLPE-----NEDEVRRAGRLS 236 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 236 (897)
-++|-|+|+.|+||||||.++..... ..-...+|+.+....+..- ++.++.+... .+...+....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 47999999999999999999987753 2345689998888777653 6677654321 222233333333
Q ss_pred HHHhccCeEEEEEcCCC
Q 043332 237 GMLKAKAKFVLILDDMW 253 (897)
Q Consensus 237 ~~l~~~~r~LlVlDdv~ 253 (897)
..+.++.--+||+|-|-
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 44445666799999884
No 479
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.77 E-value=0.21 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
...|+|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.77 E-value=0.25 Score=49.37 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...|.|.|..|+||||+++.++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 481
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.73 E-value=0.24 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...++|.|++|+||||+|+.++...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999876
No 482
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.70 E-value=0.18 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
..+++|+|+.|.|||||++.++.-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998764
No 483
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.67 E-value=0.44 Score=45.47 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
....|.|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999998875
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.61 E-value=0.23 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
-.|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999875
No 485
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.61 E-value=0.23 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.+.+|+|..|.|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998754
No 486
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.53 E-value=0.22 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||++.+..-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.38 E-value=0.23 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4689999999999999999998864
No 488
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.31 E-value=0.23 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999875
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.30 E-value=0.25 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
-.|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999875
No 490
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.23 E-value=0.62 Score=45.65 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCeeEEEEEcCCCchHHHHHHHHHHHHh
Q 043332 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (897)
Q Consensus 160 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 187 (897)
.....|.|.|+.|+||||+++.+.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999999874
No 491
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.22 E-value=0.54 Score=47.81 Aligned_cols=37 Identities=24% Similarity=0.526 Sum_probs=28.1
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHhhccCCCcEEEEEEeC
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 202 (897)
++|+|.|-||+||||+|..++..... . -..+.-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~-~--G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA-M--GKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT-T--TCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH-C--CCcEEEEcCC
Confidence 57888999999999999999998742 2 2345666654
No 492
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.05 E-value=0.27 Score=52.72 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
...++|+|..|.|||||++.++...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 493
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.04 E-value=0.48 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 161 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998865
No 494
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.96 E-value=0.24 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 495
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.91 E-value=0.26 Score=52.14 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCchHHHHHHHHHHHH
Q 043332 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
-.+++|+|+.|.|||||.+.++.-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.85 E-value=0.29 Score=45.14 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 043332 165 IGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 165 i~I~G~gGiGKTtLa~~v~~~ 185 (897)
|.|+|.+|+|||||+..+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999765
No 497
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.85 E-value=0.81 Score=50.22 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=51.3
Q ss_pred eeEEEEEcCCCchHHHHH-HHHHHHHhhc---cCCCc-EEEEEEeCCCCC-HHHHHHHHHHHHc-------CCCCCChhH
Q 043332 162 VTKIGVWGMGGIGKTTIM-KEINNRLQKE---TNKFN-VVIWVTVSQPLD-LIKLQNEIAAALN-------QSLPENEDE 228 (897)
Q Consensus 162 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~---~~~f~-~~~wv~vs~~~~-~~~~~~~i~~~l~-------~~~~~~~~~ 228 (897)
-..++|+|..|+|||+|| ..+++..... ..+-+ .++++-+++... ..++.+++...=. ....+....
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 456899999999999994 5777765210 01233 467777876543 4455555543210 011111111
Q ss_pred HH-----HHHHHHHHHh-ccCeEEEEEcCCCc
Q 043332 229 VR-----RAGRLSGMLK-AKAKFVLILDDMWK 254 (897)
Q Consensus 229 ~~-----~~~~l~~~l~-~~~r~LlVlDdv~~ 254 (897)
.. ....+-+++. +++.+||++||+..
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 11 1112223333 57899999999853
No 498
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.83 E-value=0.28 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
.-|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999875
No 499
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.80 E-value=0.33 Score=46.19 Aligned_cols=24 Identities=21% Similarity=-0.013 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHH
Q 043332 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (897)
Q Consensus 163 ~vi~I~G~gGiGKTtLa~~v~~~~ 186 (897)
.++.|+|+.|+||||++.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997777765
No 500
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.75 E-value=0.42 Score=45.39 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCchHHHHHHHHHHH
Q 043332 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNR 185 (897)
Q Consensus 151 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 185 (897)
..+.+ +.....-.|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33445567899999999999999998854
Done!