BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043334
(903 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
Query: 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF 715
+I + + + ID +E I S+ L+L + G T+ P S ++ A
Sbjct: 83 AISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVI 142
Query: 716 LKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTV 775
A + ++P + F + I E++ KP + I G NPT E ++ +
Sbjct: 143 AGAQVRSVPLVPGIDF--FNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVAL 200
Query: 776 CAKYGARVVIDTAFSGLEFNYEGWGG---WDLEGC--LSKLYSSTNSSFNVSLLGGLSLK 830
+Y VV D A++ + Y+GW + G ++ + + + S+N++
Sbjct: 201 AKQYDVMVVHDLAYA--DIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMA-------- 250
Query: 831 MLTGALKFGFLVLNHPQLVDAFS 853
+ GF+V N P+LV A +
Sbjct: 251 ----GWRIGFMVGN-PELVSALA 268
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 634 KAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693
KAA+ + R + E + +I Q ++ + G + + QS+FN L+L I
Sbjct: 53 KAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFN-LMLAMI 111
Query: 694 LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYIS 753
G + PA +Y + + V +PT E FK++ + + + T K + +
Sbjct: 112 EPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI-TPKTKLLVFN 170
Query: 754 GPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFN 795
P+ NPTG++Y+ E+ I V + G V+ D + + ++
Sbjct: 171 TPS-NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD 211
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINL 74
+ + V +LGC G +T++IA KW PS+ GLDI+ R I + N+
Sbjct: 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRXVGLDIDSRLIHSARQNI 90
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80
KD + +LGCG G I IA+A++ DIN RAI+++ N+ LN LD
Sbjct: 52 KDDDILDLGCGYGVIGIALADE--VKSTTXADINRRAIKLAKENIKLNNLD 100
>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
pdb|3NRA|B Chain B, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
Length = 407
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEF 794
NP G++YS +EI I + A+YGA V+ D +S L +
Sbjct: 190 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY 226
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 707 GNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSN 766
NY + A+ ++ + E GF + + I E K + +S P NPTG++Y
Sbjct: 137 ANYNAFAKIAGVKLIPVTRRXEEGFAIPQNLESFINERTK--GIVLSNPC-NPTGVVYGK 193
Query: 767 KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGG 826
E ++ + ++G +++D +S + F E +E S V ++
Sbjct: 194 DEXRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIE------------SDKVVVIDS 241
Query: 827 LSLKMLTGALKFGFLVLNHPQLV 849
+S K + G L+ + +L+
Sbjct: 242 VSXKFSACGARVGCLITRNEELI 264
>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|B Chain B, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|C Chain C, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
pdb|1XI9|D Chain D, Alanine Aminotransferase From Pyrococcus Furiosus
Pfu-1397077-001
Length = 406
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 33/247 (13%)
Query: 669 IDINAEFIYADCSQSLFNKLVLCCILE-GGTLCFPAGSNGNYVSAARFLKANIVNIPTES 727
+DI + + + + +L+ +L+ G + P S Y +F V T
Sbjct: 97 VDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIE 156
Query: 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDT 787
E ++ + + T + + + P NPTG LY K +E IL + +Y V+ D
Sbjct: 157 EEDWQPDIDDIRKKI-TDRTKAIAVINPN-NPTGALYDKKTLEEILNIAGEYEIPVISDE 214
Query: 788 AFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847
+ + + E G L+K V ++ GLS + G++ P+
Sbjct: 215 IYDLMTYEGEHIS----PGSLTK-------DVPVIVMNGLSKVYFATGWRLGYMYFVDPE 263
Query: 848 --LVDAFSSFPGLSK----PHSTVRY-AIKKLLGLRERKARDLMNAVAEHIRNLESRS-- 898
L + + L++ P++ ++ AI L G M+ + E+++ L+ R
Sbjct: 264 NKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG--------PMDYLKEYMKKLKERRDY 315
Query: 899 --KRLKE 903
KRL E
Sbjct: 316 IYKRLNE 322
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEK--GQPIY 87
+D + ++GCG+G I++ +A K V G+DIN AIR++ L++K G+ +
Sbjct: 30 EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 88 DAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITE 140
E + L FH+S D + + P+P S+II E
Sbjct: 88 KVENASSLS---FHDSSF-----DFAVMQAFLTSV------PDPKERSRIIKE 126
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 333 KERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALR-LFSPRL 391
KE Y P G R +A F+KKY H+ ++ +N+V+ A++ R L P
Sbjct: 64 KEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGD 123
Query: 392 AIVDERLTRHLPKHWLTSLT-------IKGTDTENSSEHELTVIEAPRQSDLMVELIKKL 444
++ E P + T L I+G +N + DL+ E IK+L
Sbjct: 124 VVITEN-----PSYINTLLAFEQLGAKIEGVPVDNDG----------MRVDLLEEKIKEL 168
Query: 445 KPQVVISGIGDFEAVTSSAFVHLLDVTREVGSR-LFLDISDHFELSSLP-SSNGVLKYLA 502
K + G T + + VT + R L+I+ ++L + ++ ++Y
Sbjct: 169 KAK----GQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEG 224
Query: 503 GNVLPSHA------AVICGLVKNQVYSDLEVAFLISEEEAIFKAL 541
G+++P A ++ G + + + + ++I+E E + K L
Sbjct: 225 GDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVL 269
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 30/155 (19%)
Query: 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNS 817
NP G+ S + + +L + +KY ++ DTA++ + YEG G + L + N
Sbjct: 186 NPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM--RYEG-------GDIVPLKALDNE 236
Query: 818 SFNVSLLGGLSLKMLTGALKFGFL---------VLNHPQLVD----AFSSFPGLS--KPH 862
V + G LS K+L + G++ VL Q +D A S + L K
Sbjct: 237 G-RVIVAGTLS-KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRG 294
Query: 863 STVRYAIK-KLLGLRERKARDLM-NAVAEHIRNLE 895
+Y ++ LLG +E+ RD+M A+ H+ N E
Sbjct: 295 YFEKYHLEGALLGYKEK--RDIMLKALENHLPNAE 327
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
KD V ++GCG+G T+ IA++ VY +D AI ++ N L + K I
Sbjct: 35 KDDVVVDVGCGSGGXTVEIAKRC--KFVYAIDYLDGAIEVTKQN--LAKFNIKNCQIIKG 90
Query: 90 EKKTLLDRVEFHES 103
+ +LD++EF+++
Sbjct: 91 RAEDVLDKLEFNKA 104
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 33 TVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92
V ++ G G +IA K+Y +DINP AI + N+ LN L+ K PI
Sbjct: 198 VVVDMFAGVGPFSIACKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI------ 248
Query: 93 TLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITE 140
L+ R+ D++ R++ +P+ + D I+ E
Sbjct: 249 -------------LSDVREVDVKGNRVIMNLPKFAHKFIDKALDIVEE 283
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 33 TVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92
V ++ G G +IA K+Y +DINP AI + N+ LN L+ K PI
Sbjct: 198 VVVDMFAGVGPFSIACKN---AKKIYAIDINPHAIELLXKNIKLNKLEHKIIPI------ 248
Query: 93 TLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITE 140
L+ R+ D++ R++ +P+ + D I+ E
Sbjct: 249 -------------LSDVREVDVKGNRVIMNLPKFAHKFIDKALDIVEE 283
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81
K+ ++GCG G +T+ +A + +VY +D NP AI + NL + L +
Sbjct: 33 KNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEXNLQRHGLGD 82
>pdb|2IUS|A Chain A, E. Coli Ftsk Motor Domain
pdb|2IUS|B Chain B, E. Coli Ftsk Motor Domain
pdb|2IUS|C Chain C, E. Coli Ftsk Motor Domain
pdb|2IUS|D Chain D, E. Coli Ftsk Motor Domain
pdb|2IUS|E Chain E, E. Coli Ftsk Motor Domain
pdb|2IUS|F Chain F, E. Coli Ftsk Motor Domain
Length = 512
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF 819
TGL+ +N TV +K +R ++D A G L G LYS NS+
Sbjct: 348 TGLIKANIPTRIAFTVSSKIDSRTILDQA-----------GAESLLGMGDMLYSGPNSTL 396
Query: 820 NVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854
V + G A+ + PQ VD +S
Sbjct: 397 PVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITS 431
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 33 TVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92
V + G G +IA K+Y +DINP AI + N+ LN L+ K PI
Sbjct: 198 VVVDXFAGVGPFSIACKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI------ 248
Query: 93 TLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITE 140
L+ R+ D++ R++ +P+ + D I+ E
Sbjct: 249 -------------LSDVREVDVKGNRVIXNLPKFAHKFIDKALDIVEE 283
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY-- 87
+++ V ++ G G+ TI +A+ P VY ++ NP A N+ LN L+ PI
Sbjct: 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNV-IPILAD 177
Query: 88 --DAEKKTLLDRV 98
D E K + DRV
Sbjct: 178 NRDVELKDVADRV 190
>pdb|4DCM|A Chain A, Crystal Structure Of Methyltransferase Rlmg Modifying
G1835 Of 23s Rrna In Escherichia Coli
Length = 375
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 34 VAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN---ALD 80
+ +LGCGNG I + + +K +KV +D +P A+ S +N+ N ALD
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPXAVASSRLNVETNXPEALD 275
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 25 PDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAI 67
PD KTV +LGCG GW I AE KV G+D++ R +
Sbjct: 41 PD--FNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERML 80
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 742 LETVKKPW------VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS 790
+E VK W VY+ P NPT + +I+ I VC + GAR+V+D F+
Sbjct: 134 VEKVKAAWKPNTKMVYLESPA-NPTCKV---SDIKGIAVVCHERGARLVVDATFT 184
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 742 LETVKKPW------VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS 790
+E VK W VY+ P NPT + +I+ I VC + GAR+V+D F+
Sbjct: 134 VEKVKAAWKPNTKMVYLESPA-NPTCKV---SDIKGIAVVCHERGARLVVDATFT 184
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73
KTVA++G G+G I +++A K+ + V+ D++ +A+ I+ N
Sbjct: 125 KTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKN 165
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEK 82
KTVA++G G+G I +++A K+ + V+ D++ +A+ I+ N + + ++
Sbjct: 135 KTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDR 184
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73
KTVA++G G+G I +++A K+ + V+ D++ +A+ I+ N
Sbjct: 123 KTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKN 163
>pdb|3F7J|A Chain A, B.Subtilis Yvgn
pdb|3F7J|B Chain B, B.Subtilis Yvgn
Length = 276
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 65 RAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFH----ESDLLAYCRDHDIQLE 117
RAI +S N ++ L+E + DAE K ++++VEFH + +L YC+ IQLE
Sbjct: 136 RAIGVS--NFQVHHLEE---LLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLE 187
>pdb|3D3F|A Chain A, Crystal Structure Of Yvgn And Cofactor Nadph From Bacillus
Subtilis
pdb|3D3F|B Chain B, Crystal Structure Of Yvgn And Cofactor Nadph From Bacillus
Subtilis
Length = 275
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 65 RAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFH----ESDLLAYCRDHDIQLE 117
RAI +S N ++ L+E + DAE K ++++VEFH + +L YC+ IQLE
Sbjct: 135 RAIGVS--NFQVHHLEE---LLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLE 186
>pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
pdb|1H1C|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
pdb|1H1C|C Chain C, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
pdb|1H1C|D Chain D, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
Length = 335
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809
V+I P NPTG ++ +EIE IL K GA V +D A+ EF+ E + +
Sbjct: 142 VFIPNPN-NPTGHVFEREEIERIL----KTGAFVALDEAY--YEFHGESYVDF------L 188
Query: 810 KLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853
K Y N++++ S A + G++V + + +DA++
Sbjct: 189 KKYE------NLAVIRTFSKAFSLAAQRVGYVVASE-KFIDAYN 225
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 26 DSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAI 67
D++ +A+LGCG G T+ +A+ +P K+ G+D P I
Sbjct: 48 DNLTNKSLIADLGCGTGGQTMILAQH-VPGKITGIDFFPGFI 88
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 26 DSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAI 67
D++ +A+LGCG G T+ +A+ +P K+ G+D P I
Sbjct: 43 DNLTNKSLIADLGCGTGGQTMILAQH-VPGKITGIDFFPGFI 83
>pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|B Chain B, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|C Chain C, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|D Chain D, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU2|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU2|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|C Chain C, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|D Chain D, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
Length = 335
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809
V+I P NPTG ++ +EIE IL K GA V +D A+ EF+ E + +
Sbjct: 142 VFIPNPN-NPTGHVFEREEIERIL----KTGAFVALDEAY--YEFHGESYVDF------L 188
Query: 810 KLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853
K Y N++++ S A + G++V + + +DA++
Sbjct: 189 KKYE------NLAVIRTFSKAFSLAAQRVGYVVASE-KFIDAYN 225
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 12/188 (6%)
Query: 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI----NPTGLLYSNKEIENILTV 775
IV I S GF++TE L + +K + + G + NP G + E+ +L+
Sbjct: 160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 219
Query: 776 CAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF--NVSLLGGLSLKMLT 833
G ++ D +SG F+ + + L NS V ++ LS +
Sbjct: 220 VEDKGIHLISDEIYSGTAFSSPSF--ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL 277
Query: 834 GALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893
+ G + N +V A + S ++ + +L ++ N +AE+ +
Sbjct: 278 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTK----NYIAENHKR 333
Query: 894 LESRSKRL 901
L+ R K+L
Sbjct: 334 LKQRQKKL 341
>pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|B Chain B, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|C Chain C, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|D Chain D, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809
V+I P NPTG ++ +EIE IL K GA V +D A+ EF+ E + +
Sbjct: 154 VFIPNPN-NPTGHVFEREEIERIL----KTGAFVALDEAY--YEFHGESYVDF------L 200
Query: 810 KLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853
K Y N++++ S A + G++V + + +DA++
Sbjct: 201 KKYE------NLAVIRTFSKAFSLAAQRVGYVVASE-KFIDAYN 237
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 12/188 (6%)
Query: 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI----NPTGLLYSNKEIENILTV 775
IV I S GF++TE L + +K + + G + NP G + E+ +L+
Sbjct: 158 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 217
Query: 776 CAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF--NVSLLGGLSLKMLT 833
G ++ D +SG F+ + + L NS V ++ LS +
Sbjct: 218 VEDKGIHLISDEIYSGTAFSSPSF--ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL 275
Query: 834 GALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893
+ G + N +V A + S ++ + +L ++ N +AE+ +
Sbjct: 276 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTK----NYIAENHKR 331
Query: 894 LESRSKRL 901
L+ R K+L
Sbjct: 332 LKQRQKKL 339
>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L-Vinylglycine
Length = 473
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 12/188 (6%)
Query: 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI----NPTGLLYSNKEIENILTV 775
IV I S GF++TE L + +K + + G + NP G + E+ +L+
Sbjct: 160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 219
Query: 776 CAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF--NVSLLGGLSLKMLT 833
G ++ D +SG F+ + + L NS V ++ LS +
Sbjct: 220 VEDKGIHLISDEIYSGTAFSSPSF--ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL 277
Query: 834 GALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893
+ G + N +V A + S ++ + +L ++ N +AE+ +
Sbjct: 278 PGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTK----NYIAENHKR 333
Query: 894 LESRSKRL 901
L+ R K+L
Sbjct: 334 LKQRQKKL 341
>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGW-DLEGCLSKLYSSTN 816
NPTG +++ E+E + +C ++G RV+ D + + + W ++ L +S +
Sbjct: 173 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGS 232
Query: 817 SSFNVSLLGG 826
SFN+ L G
Sbjct: 233 KSFNIPALTG 242
>pdb|4B3K|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
Length = 479
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 756 TINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFN-YEGWGGWD 803
TINP GL Y N+ ++ C G R VI+ L Y+ +GGW+
Sbjct: 89 TINPDGLAYYNR----VIDACLANGIRPVINLHHFDLPIALYQAYGGWE 133
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 29 LKDKTVA--ELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRIS 70
L DK A ++GCG G+ T A A+ +GLD++ AI+ +
Sbjct: 82 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 114 IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF-VEDQFGLGLIARA 172
+ L R + IL P+ D+ ++ EN + Y+ +Q + + L L+
Sbjct: 137 VALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196
Query: 173 VEEGIGVIKPSGIMIFNMGGRPGQG 197
+ E IG+ P G++++ G PG G
Sbjct: 197 LYEQIGIDPPRGVLLY---GPPGTG 218
>pdb|3B3D|A Chain A, B.Subtilis Ytbe
pdb|3B3D|B Chain B, B.Subtilis Ytbe
pdb|3B3D|C Chain C, B.Subtilis Ytbe
Length = 314
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 89 AEKKTLLDRVEFH----ESDLLAYCRDHDIQLE 117
AE K ++++VEFH + +L+ YC++ IQ+E
Sbjct: 193 AEIKPMINQVEFHPRLTQKELIRYCQNQGIQME 225
>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
Synthase
Length = 410
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI----NPTGLLYSNKEIENILTV 775
IV I S GF++TE L + +K + + G + NP G + E+ +L+
Sbjct: 143 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 202
Query: 776 CAKYGARVVIDTAFSGLEFN 795
G ++ D +SG F+
Sbjct: 203 VEDKGIHLISDEIYSGTAFS 222
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 26 DSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRI 69
+ + D +A++GCG G T+ +A+ ++ ++ G+D+ P I I
Sbjct: 42 NELTDDAKIADIGCGTGGQTLFLAD-YVKGQITGIDLFPDFIEI 84
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 26 DSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRI 69
+ + D +A++GCG G T+ +A+ ++ ++ G+D+ P I I
Sbjct: 48 NELTDDAKIADIGCGTGGQTLFLAD-YVKGQITGIDLFPDFIEI 90
>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
pdb|2X5F|B Chain B, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
Length = 430
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 695 EGGTLCFPAGSNGNY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWV-Y 751
+ T+ P + GNY V R AN+ P + G T+ +LV L++ K V
Sbjct: 136 QDDTILLPEHNWGNYKLVFNTRN-GANLQTYPIFDKDGHYTTD-SLVEALQSYNKDKVIM 193
Query: 752 ISGPTINPTGLLYSNKEIENI---LTVCAKYGARV--VIDTAFSGLEFNYEGWGGWDLEG 806
I NPTG ++KE+ I + A G +V V+D A+ GL YE L
Sbjct: 194 ILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLF--YEDVYTQSLFT 251
Query: 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843
L+ L+S N+ + L G + + + GF+
Sbjct: 252 ALTNLHS--NAILPIR-LDGATKEFFAWGFRVGFMTF 285
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 695 EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF--KMTEKTLVTILETVKKPWVYI 752
+ T+ +P Y AA+F+KA + P E F + EK L + V +
Sbjct: 107 QNPTIAYPNPFYQIYEGAAKFIKAKSLLXPLTKENDFTPSLNEKELQEV------DLVIL 160
Query: 753 SGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWD-LEGCLSKL 811
+ P NPTG S +E+ + + + K+ ++ D +S + YE LE C
Sbjct: 161 NSPN-NPTGRTLSLEELISWVKLALKHDFILINDECYSEI---YENTPPPSLLEACX--- 213
Query: 812 YSSTNSSF-NVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF 855
+ N +F NV ++ LS + L+ GF+ +L++ + +F
Sbjct: 214 -LAGNEAFKNVLVIHSLSKRSSAPGLRSGFIA-GDSRLLEKYKAF 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,937,911
Number of Sequences: 62578
Number of extensions: 1074329
Number of successful extensions: 2639
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2618
Number of HSP's gapped (non-prelim): 55
length of query: 903
length of database: 14,973,337
effective HSP length: 108
effective length of query: 795
effective length of database: 8,214,913
effective search space: 6530855835
effective search space used: 6530855835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)