Your job contains 1 sequence.
>043337
MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI
MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA
VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV
IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC
AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG
SVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRRDG
ATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEESPGD
VIPTTSAMDVSETGVHKGGEKTLKDAVKPKHKRKKKAFSSTADAS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043337
(465 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2103316 - symbol:CER7 "AT3G60500" species:3702... 1249 3.3e-127 1
TAIR|locus:2089215 - symbol:RRP45a "AT3G12990" species:37... 1100 2.0e-111 1
MGI|MGI:1355319 - symbol:Exosc9 "exosome component 9" spe... 560 3.4e-54 1
RGD|1307888 - symbol:Exosc9 "exosome component 9" species... 560 3.4e-54 1
UNIPROTKB|F1MB54 - symbol:EXOSC9 "Exosome complex compone... 556 8.9e-54 1
UNIPROTKB|Q3SWZ4 - symbol:EXOSC9 "Exosome complex compone... 556 8.9e-54 1
UNIPROTKB|F1S1T6 - symbol:EXOSC9 "Uncharacterized protein... 554 1.5e-53 1
UNIPROTKB|Q06265 - symbol:EXOSC9 "Exosome complex compone... 553 1.9e-53 1
POMBASE|SPCC757.08 - symbol:SPCC757.08 "exosome subunit R... 547 8.0e-53 1
UNIPROTKB|F1NJI1 - symbol:EXOSC9 "Uncharacterized protein... 461 1.0e-43 1
SGD|S000002688 - symbol:RRP45 "Exosome non-catalytic core... 448 2.5e-42 1
ASPGD|ASPL0000004691 - symbol:AN6111 species:162425 "Emer... 424 8.7e-40 1
WB|WBGene00018154 - symbol:exos-9 species:6239 "Caenorhab... 414 9.9e-39 1
GENEDB_PFALCIPARUM|PF13_0340 - symbol:PF13_0340 "exosome ... 376 1.1e-34 1
UNIPROTKB|Q8ID62 - symbol:PF13_0340 "Exosome complex exon... 376 1.1e-34 1
FB|FBgn0030789 - symbol:Rrp45 "Rrp45" species:7227 "Droso... 375 1.3e-34 1
UNIPROTKB|Q96B26 - symbol:EXOSC8 "Exosome complex compone... 342 4.2e-31 1
UNIPROTKB|Q2KHU3 - symbol:EXOSC8 "Exosome complex compone... 339 8.8e-31 1
RGD|1306169 - symbol:Exosc8 "exosome component 8" species... 336 1.8e-30 1
UNIPROTKB|E2R7U8 - symbol:EXOSC8 "Uncharacterized protein... 333 3.8e-30 1
MGI|MGI:1916889 - symbol:Exosc8 "exosome component 8" spe... 332 4.9e-30 1
UNIPROTKB|E1BUV1 - symbol:LOC100858560 "Uncharacterized p... 322 5.6e-29 1
CGD|CAL0004911 - symbol:orf19.4078 species:5476 "Candida ... 277 6.5e-24 1
TAIR|locus:2077522 - symbol:AT3G07750 "AT3G07750" species... 275 1.1e-23 1
TAIR|locus:2202705 - symbol:AT1G60080 "AT1G60080" species... 274 1.4e-23 1
ZFIN|ZDB-GENE-050417-47 - symbol:exosc7 "exosome componen... 253 3.4e-21 1
UNIPROTKB|Q15024 - symbol:EXOSC7 "Exosome complex compone... 251 5.6e-21 1
MGI|MGI:1913696 - symbol:Exosc7 "exosome component 7" spe... 251 5.6e-21 1
POMBASE|SPBC17D1.03c - symbol:SPBC17D1.03c "exosome subun... 244 3.4e-20 1
RGD|1309758 - symbol:Exosc7 "exosome component 7" species... 215 5.5e-17 1
DICTYBASE|DDB_G0280251 - symbol:DDB_G0280251 "putative ex... 164 1.7e-16 2
FB|FBgn0034065 - symbol:Rrp42 "Rrp42" species:7227 "Droso... 211 1.3e-15 1
UNIPROTKB|Q95Z11 - symbol:RRP45 "Rrp45p homologue" specie... 204 7.6e-14 1
GENEDB_PFALCIPARUM|MAL13P1.204 - symbol:MAL13P1.204 "exor... 162 1.9e-09 1
UNIPROTKB|Q8IDT4 - symbol:MAL13P1.204 "Exoribonuclease PH... 162 1.9e-09 1
UNIPROTKB|Q8MPG3 - symbol:EAP2 "Exosome-associated protei... 138 1.4e-06 1
UNIPROTKB|F1RSQ6 - symbol:EXOSC8 "Uncharacterized protein... 112 8.7e-06 1
WB|WBGene00009289 - symbol:exos-7 species:6239 "Caenorhab... 131 1.0e-05 1
>TAIR|locus:2103316 [details] [associations]
symbol:CER7 "AT3G60500" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0010025 "wax biosynthetic
process" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL138646
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725
SUPFAM:SSF55666 HOGENOM:HOG000229504 KO:K03678 EMBL:BT004196
EMBL:BT005701 EMBL:DQ869270 IPI:IPI00517590 PIR:T47861
RefSeq:NP_001190143.1 RefSeq:NP_191609.1 RefSeq:NP_974466.1
UniGene:At.34436 ProteinModelPortal:Q9M209 SMR:Q9M209 IntAct:Q9M209
STRING:Q9M209 PRIDE:Q9M209 EnsemblPlants:AT3G60500.1
EnsemblPlants:AT3G60500.2 EnsemblPlants:AT3G60500.3 GeneID:825221
KEGG:ath:AT3G60500 TAIR:At3g60500 InParanoid:Q9M209 OMA:KEAACLD
PhylomeDB:Q9M209 ProtClustDB:CLSN2685053 Genevestigator:Q9M209
Uniprot:Q9M209
Length = 438
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 258/429 (60%), Positives = 322/429 (75%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLAN WRLTVNE +F+ETAL S +R+DGR ++YRKL+IKFG+E GSSEVQLGQTH+
Sbjct: 1 MEGRLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVT QLVQPY+DRPNEG+LSIFTEFSPMADPSFE GRP ESAVELGRI+DRGLRESRA
Sbjct: 61 MGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCVLAGK+VW++RIDLHILDNGGNLVDAANIAALA+L+TFRRP+C++GGE+ EV
Sbjct: 121 VDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEV 180
Query: 181 IVHXXXXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
I+H IIHHLPIA TFGFF+ +++V+DPT+ EEAVM G+MT T+NANGD+C
Sbjct: 181 IIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT--SITL 298
AIQKPG EGV QSVI+ CLRLAS A+ TK I++ VE YN ER+L+K+KRHPT +
Sbjct: 241 AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEV 300
Query: 299 DG-SVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
G +V +KE+ + S E+SR+H+E+ +L++ E RSS+
Sbjct: 301 SGPTVAVKEEHRKSSDQERAAEISREHVERLKLSTEEV------------------RSSK 342
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRG---TLTPKKKQQDPTGE-RKPN-ES 412
+ A +NF GG ++WDPYS +D D LK SLASRG T + K+ + +G +K E
Sbjct: 343 EEEA-ANFKGGPSNWDPYSEAMDVDSLKVSLASRGDPVTKSSSTKKMNGSGNAQKVGVEI 401
Query: 413 KPEESPGDV 421
EE G++
Sbjct: 402 SVEEVTGEL 410
>TAIR|locus:2089215 [details] [associations]
symbol:RRP45a "AT3G12990" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0010025 "wax biosynthetic process" evidence=IGI]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GO:GO:0010025 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 KO:K03678 EMBL:AB026645 EMBL:BT003077 EMBL:AK227231
IPI:IPI00533330 RefSeq:NP_001030684.1 RefSeq:NP_001189874.1
RefSeq:NP_566441.1 UniGene:At.11988 ProteinModelPortal:Q9LDM2
SMR:Q9LDM2 STRING:Q9LDM2 PRIDE:Q9LDM2 DNASU:820485
EnsemblPlants:AT3G12990.1 EnsemblPlants:AT3G12990.2
EnsemblPlants:AT3G12990.3 GeneID:820485 KEGG:ath:AT3G12990
TAIR:At3g12990 InParanoid:Q9LDM2 OMA:HEFRDIS PhylomeDB:Q9LDM2
ProtClustDB:CLSN2688326 Genevestigator:Q9LDM2 Uniprot:Q9LDM2
Length = 307
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 208/294 (70%), Positives = 248/294 (84%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RL N WRLTVNE +F+E+AL S +R+DGR ++YRKL+IKFG+E GSS+VQLGQTH+
Sbjct: 1 MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M FVT QLVQPY+DRP+EG+ SIFTEFSPMADPSFE G P ESAVELGRI+DR LRESRA
Sbjct: 61 MAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCVLAGKLVW++RIDLHILDNGGNLVDAAN+AALA+L+TFRRP+C++GG++ +V
Sbjct: 121 VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDV 180
Query: 181 IVHXXXXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
I+H IIHHLPIA TFGFF+ S+LV+DPT+ EEAVM G+MT T+NANGD+C
Sbjct: 181 IIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT 294
AIQKPG EGV QSVI+ CLRLAS AS TK I+DAVE YN ER+ +K+KRH T
Sbjct: 241 AIQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVEAYNRERSSQKVKRHHT 294
>MGI|MGI:1355319 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10090 "Mus
musculus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=ISO] [GO:0030307 "positive regulation of
cell growth" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1355319 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0004527 GO:GO:0090305 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:AF152841 EMBL:AF152842 EMBL:BC005622 EMBL:BC052156
EMBL:AK011636 IPI:IPI00119442 RefSeq:NP_062266.1 UniGene:Mm.116711
ProteinModelPortal:Q9JHI7 SMR:Q9JHI7 STRING:Q9JHI7
PhosphoSite:Q9JHI7 PaxDb:Q9JHI7 PRIDE:Q9JHI7
Ensembl:ENSMUST00000029269 GeneID:50911 KEGG:mmu:50911
UCSC:uc008ozm.1 InParanoid:Q9JHI7 NextBio:307895 Bgee:Q9JHI7
CleanEx:MM_EXOSC9 Genevestigator:Q9JHI7
GermOnline:ENSMUSG00000027714 Uniprot:Q9JHI7
Length = 438
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 114/274 (41%), Positives = 175/274 (63%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +
Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLN 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ V
Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++
Sbjct: 130 WQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDPVPLS 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +L+
Sbjct: 187 IHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
+ +C ++A ++IT+ I+ A+E N +R +RK
Sbjct: 247 VFRCSKIAGVKVAEITELIQKALE--NDQR-VRK 277
>RGD|1307888 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10116 "Rattus
norvegicus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=ISO;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO] [GO:0030307
"positive regulation of cell growth" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0071028
"nuclear mRNA surveillance" evidence=IEA;ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1307888
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0006364 GO:GO:0043928 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
GeneTree:ENSGT00530000063093 HSSP:O29756 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:BC097413 IPI:IPI00206563 RefSeq:NP_001020577.1
UniGene:Rn.13826 STRING:Q4QR75 Ensembl:ENSRNOT00000020662
GeneID:294975 KEGG:rno:294975 UCSC:RGD:1307888 InParanoid:Q4QR75
NextBio:638811 Genevestigator:Q4QR75 Uniprot:Q4QR75
Length = 437
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 114/274 (41%), Positives = 175/274 (63%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +
Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLN 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ V
Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++
Sbjct: 130 WQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDPVPLS 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +L+
Sbjct: 187 IHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
+ +C ++A ++IT+ I+ A+E N +R +RK
Sbjct: 247 VFRCSKIAGVKVAEITELIQKALE--NDQR-VRK 277
>UNIPROTKB|F1MB54 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
IPI:IPI00714906 UniGene:Bt.12557 OMA:YRNIRIS EMBL:DAAA02015230
Ensembl:ENSBTAT00000006502 Uniprot:F1MB54
Length = 440
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 109/264 (41%), Positives = 170/264 (64%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +
Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLN 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ V
Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++
Sbjct: 130 WQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDPVPLS 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +L+
Sbjct: 187 IHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVE 278
+++C ++A +IT+ I+ A+E
Sbjct: 247 VLRCSKIAGVKVVEITELIQKALE 270
>UNIPROTKB|Q3SWZ4 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 EMBL:BC104587 IPI:IPI00714906
RefSeq:NP_001030225.1 UniGene:Bt.12557 HSSP:O29756 STRING:Q3SWZ4
PRIDE:Q3SWZ4 GeneID:508005 KEGG:bta:508005 CTD:5393
HOVERGEN:HBG051523 InParanoid:Q3SWZ4 KO:K03678 OrthoDB:EOG43TZVZ
NextBio:20868308 Uniprot:Q3SWZ4
Length = 440
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 109/264 (41%), Positives = 170/264 (64%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +
Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLN 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ V
Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++
Sbjct: 130 WQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDPVPLS 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +L+
Sbjct: 187 IHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVE 278
+++C ++A +IT+ I+ A+E
Sbjct: 247 VLRCSKIAGVKVVEITELIQKALE 270
>UNIPROTKB|F1S1T6 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071028 "nuclear mRNA
surveillance" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
OMA:YRNIRIS EMBL:CU861488 EMBL:AEMK01190186
Ensembl:ENSSSCT00000009962 Uniprot:F1S1T6
Length = 442
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 109/264 (41%), Positives = 169/264 (64%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +
Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVSPKLN 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ V
Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++
Sbjct: 130 WQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDPVPLS 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +L+
Sbjct: 187 IHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVE 278
+++C ++A +IT+ I+ A+E
Sbjct: 247 VLRCSKIAGVKVLEITELIQKALE 270
>UNIPROTKB|Q06265 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006364
"rRNA processing" evidence=NAS] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA;NAS] [GO:0006955 "immune response"
evidence=NAS] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0030307
"positive regulation of cell growth" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005634 GO:GO:0030307
GO:GO:0006955 GO:GO:0005730 GO:GO:0017091 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC079341 GO:GO:0006364
GO:GO:0000176 GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 CTD:5393 HOVERGEN:HBG051523 KO:K03678
OrthoDB:EOG43TZVZ EMBL:M58460 EMBL:U09215 EMBL:AJ505989
EMBL:AJ517294 IPI:IPI00029697 IPI:IPI00607722 IPI:IPI00654592
IPI:IPI00845426 PIR:G01425 RefSeq:NP_001029366.1 RefSeq:NP_005024.2
UniGene:Hs.91728 ProteinModelPortal:Q06265 SMR:Q06265 IntAct:Q06265
MINT:MINT-1036055 STRING:Q06265 PhosphoSite:Q06265 DMDM:147744559
PaxDb:Q06265 PRIDE:Q06265 Ensembl:ENST00000243498
Ensembl:ENST00000379663 GeneID:5393 KEGG:hsa:5393 UCSC:uc003idz.3
UCSC:uc003iea.3 GeneCards:GC04P122722 HGNC:HGNC:9137 HPA:HPA041838
MIM:606180 neXtProt:NX_Q06265 PharmGKB:PA33463 OMA:YRNIRIS
EvolutionaryTrace:Q06265 GenomeRNAi:5393 NextBio:20906
ArrayExpress:Q06265 Bgee:Q06265 CleanEx:HS_EXOSC9
Genevestigator:Q06265 GermOnline:ENSG00000123737 Uniprot:Q06265
Length = 439
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 109/264 (41%), Positives = 169/264 (64%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +
Sbjct: 10 ERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLN 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ V
Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++
Sbjct: 130 WQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDPVPLS 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +L+
Sbjct: 187 IHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVE 278
+++C ++A ++IT+ I A+E
Sbjct: 247 VLRCSKIAGVKVAEITELILKALE 270
>POMBASE|SPCC757.08 [details] [associations]
symbol:SPCC757.08 "exosome subunit Rrp45 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPCC757.08 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K03678 PIR:T41599 RefSeq:NP_587683.1
ProteinModelPortal:O74918 STRING:O74918 EnsemblFungi:SPCC757.08.1
GeneID:2539106 KEGG:spo:SPCC757.08 OMA:LIDASCI OrthoDB:EOG4X0R2H
NextBio:20800278 Uniprot:O74918
Length = 291
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 108/267 (40%), Positives = 165/267 (61%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++N K F+ +L G+R+DGR ++R L I+FG+E G +V G T +M +T ++ +P
Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G SI TE +P+A +FE GR S+ + + R++++ +R S A+DTESLC+++G
Sbjct: 68 YTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXX 191
+ W +R +H +++ GNLVDAA IA +A+L FRRPE ++ GE EV VH
Sbjct: 128 QKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGE---EVTVHPVEERVPV 184
Query: 192 XXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
I H+PI VTF FF++ L ++D T EE + G MT TLN N +VC I K GG +
Sbjct: 185 PLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQIYKAGGIIID 244
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVE 278
S I+ C + A +A + I+ A++
Sbjct: 245 PSKIISCAKTAFDIAVSVCSVIQQALD 271
>UNIPROTKB|F1NJI1 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0030307 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0043928 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:YRNIRIS EMBL:AADN02008699
EMBL:AADN02009245 EMBL:AADN02009246 IPI:IPI00579597
Ensembl:ENSGALT00000019390 ArrayExpress:F1NJI1 Uniprot:F1NJI1
Length = 387
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 94/229 (41%), Positives = 145/229 (63%)
Query: 60 IMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR 119
++G V+ +LV P +R EG L E SPMA P FE GR SE V++ R+++R LR S+
Sbjct: 2 VLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERCLRNSK 61
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
+DTESLCV+AG+ VW IR+DLH+L++ GN+VDAA+IA + +L FRRP+ S+ G+ E
Sbjct: 62 CIDTESLCVVAGEKVWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQGK---E 118
Query: 180 VIVHXXXXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V V+ IHH+PI V+F FF + L++DP EE VM G + +N + ++
Sbjct: 119 VTVYSPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREI 178
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
C IQ GG +L+ +++C ++ + ++IT+ I+ A+ N ++ RK
Sbjct: 179 CTIQSSGGIMLLKDQVLRCNKITAVKVAEITELIQKAL---NGDKMTRK 224
>SGD|S000002688 [details] [associations]
symbol:RRP45 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IC] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR001247
SGD:S000002688 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0071035 GO:GO:0071038 EMBL:U51030
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000177
GO:GO:0000467 GO:GO:0070651 GO:GO:0071042 GO:GO:0070478
GO:GO:0070481 GO:GO:0071051 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 KO:K03678
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 PDB:2WP8 PDBsum:2WP8
OMA:LIDASCI OrthoDB:EOG4X0R2H EMBL:AY557748 PIR:S70136
RefSeq:NP_010566.1 ProteinModelPortal:Q05636 SMR:Q05636
DIP:DIP-2084N IntAct:Q05636 MINT:MINT-555570 STRING:Q05636
PaxDb:Q05636 PeptideAtlas:Q05636 EnsemblFungi:YDR280W GeneID:851874
KEGG:sce:YDR280W CYGD:YDR280w EvolutionaryTrace:Q05636
NextBio:969829 Genevestigator:Q05636 GermOnline:YDR280W
Uniprot:Q05636
Length = 305
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 103/293 (35%), Positives = 158/293 (53%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGR-PSESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVH 177
Query: 184 XXXXXXXXXXIIHHLPIAVTFGFFSSES------------LLVIDPTHHEEAVMVGKMTA 231
I H+PI VTF FF+ + + +ID T EE + G +T
Sbjct: 178 PVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
TLN N +V + K GG + +M+C A + IT +I ++ + +R
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKR 290
>ASPGD|ASPL0000004691 [details] [associations]
symbol:AN6111 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:BN001301 EMBL:AACD01000104
GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 HOGENOM:HOG000229504 KO:K03678 OMA:LIDASCI
OrthoDB:EOG4X0R2H RefSeq:XP_663715.1 ProteinModelPortal:Q5B019
STRING:Q5B019 EnsemblFungi:CADANIAT00006901 GeneID:2871127
KEGG:ani:AN6111.2 Uniprot:Q5B019
Length = 295
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 97/275 (35%), Positives = 147/275 (53%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ E+ FI AL G+R+DGR + R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSIAERDFILDALREGVRLDGRGADQLRPLTLSFGEEYGHVKVQLGKTSLVVRISAEVAK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I E + M P++E GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PHDDRPFDGIFNIAMELTAMGSPAWENGRQGDLETYVTNVLDRVIRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXX 190
G W IR D+HI D GNL+DA+ I +A L FRRP+ + D +VIV+
Sbjct: 127 GVSCWTIRADVHITDYDGNLIDASCIGVMAGLQHFRRPDAVV---KDGQVIVYGLDERVP 183
Query: 191 XXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
I H P++VTF F L ++D T EE + +N GDVC + K G V
Sbjct: 184 APLNITHKPLSVTFHTFDDGKLAILDATRKEEQASEADVVIGMNNAGDVCYLSKFQGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + LA I I A++ +R+
Sbjct: 244 DALVFITKTSLALEKVKYINGIIDKALQADLAKRS 278
>WB|WBGene00018154 [details] [associations]
symbol:exos-9 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0000003 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:FO081316
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K12586 PIR:T28842
RefSeq:NP_741217.1 ProteinModelPortal:Q20128 SMR:Q20128
STRING:Q20128 PaxDb:Q20128 PRIDE:Q20128 EnsemblMetazoa:F37C12.13a.1
EnsemblMetazoa:F37C12.13a.2 EnsemblMetazoa:F37C12.13a.3
GeneID:176012 KEGG:cel:CELE_F37C12.13 UCSC:F37C12.13a.2 CTD:176012
WormBase:F37C12.13a HOGENOM:HOG000020941 InParanoid:Q20128
OMA:LESLCVA NextBio:890730 ArrayExpress:Q20128 Uniprot:Q20128
Length = 434
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 98/331 (29%), Positives = 166/331 (50%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
EK I AL G R D R+ E+R + + G E G++ +G T +M V+ ++ +P
Sbjct: 10 EKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTKVMAAVSAEIAEPSSM 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP++G ++I + SPMA+ + E R +EL R+++ +R+SR +D E+LC+ AGK +
Sbjct: 70 RPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEI 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W IR+D+ ILD G+L+D A +AA+ +L FRRP +L + +++
Sbjct: 130 WKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTL---EPHHTLIYSEYEKAPVPLN 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
I+H+PI T G ++VIDPT E A + G + N +VCA+ + +
Sbjct: 187 IYHMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLILSTKQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRK----IKRHPTSITLDGSVNLKEKLNE 310
I +C++LA A +T + D ++ ER+ K S+ L ++
Sbjct: 247 IERCVKLAMARAEALTAVVSDVIKQDQIERSAFKRPDGFAITTPSLILTAGTTASRQIRA 306
Query: 311 PSGHNVVNELSRKHLEKPRLASAENASSPGN 341
P +++ L +P + EN S G+
Sbjct: 307 PVIKTEPESFTQRSLYQPSVILNENPLSVGS 337
>GENEDB_PFALCIPARUM|PF13_0340 [details] [associations]
symbol:PF13_0340 "exosome complex exonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 87/294 (29%), Positives = 154/294 (52%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLS 82
+ IR+DGR + R + I F ++ G E+ +G T ++ +T ++V+P+ + EG L
Sbjct: 15 IKKNIRLDGRTFEDSRNVCINFLKDYGHVEISIGFTKVICKITSEIVKPHDRKLKEGILK 74
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
I + + + + S+ +E+ I+DR L+ S ++ ESLC++ GK VW I I++
Sbjct: 75 INLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVWCICINIM 134
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXIIHHLPIAV 202
+++N GNL DA ++A L+ F+ + + D +I+ I++ PI
Sbjct: 135 VIENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGD--IIIDKEEINYSPLSILNS-PIVT 191
Query: 203 TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLA 262
TF ++ + +IDP HEE M K++ LN NG++ ++ KPGG + S IM+ + +A
Sbjct: 192 TFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLISLLKPGGIPLACSHIMESIEIA 251
Query: 263 SRMASDITKKIKDAVE------TYNTERALR-KIKRHPTSITLDGSVNLKEKLN 309
+ I K ++D +E +Y T+R L K P +I D S LK ++
Sbjct: 252 KKRILTILKILEDTLEEDKNIRSYLTKRNLHVKYSSAPVTIRYDNSFKLKPDIS 305
>UNIPROTKB|Q8ID62 [details] [associations]
symbol:PF13_0340 "Exosome complex exonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 87/294 (29%), Positives = 154/294 (52%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLS 82
+ IR+DGR + R + I F ++ G E+ +G T ++ +T ++V+P+ + EG L
Sbjct: 15 IKKNIRLDGRTFEDSRNVCINFLKDYGHVEISIGFTKVICKITSEIVKPHDRKLKEGILK 74
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
I + + + + S+ +E+ I+DR L+ S ++ ESLC++ GK VW I I++
Sbjct: 75 INLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVWCICINIM 134
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXIIHHLPIAV 202
+++N GNL DA ++A L+ F+ + + D +I+ I++ PI
Sbjct: 135 VIENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGD--IIIDKEEINYSPLSILNS-PIVT 191
Query: 203 TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLA 262
TF ++ + +IDP HEE M K++ LN NG++ ++ KPGG + S IM+ + +A
Sbjct: 192 TFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLISLLKPGGIPLACSHIMESIEIA 251
Query: 263 SRMASDITKKIKDAVE------TYNTERALR-KIKRHPTSITLDGSVNLKEKLN 309
+ I K ++D +E +Y T+R L K P +I D S LK ++
Sbjct: 252 KKRILTILKILEDTLEEDKNIRSYLTKRNLHVKYSSAPVTIRYDNSFKLKPDIS 305
>FB|FBgn0030789 [details] [associations]
symbol:Rrp45 "Rrp45" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0000176
"nuclear exosome (RNase complex)" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001247
Pfam:PF01138 EMBL:AE014298 GO:GO:0016787 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K03678 OMA:LESLCVA EMBL:AY089277
RefSeq:NP_573163.1 UniGene:Dm.19725 SMR:Q8T4A9 IntAct:Q8T4A9
STRING:Q8T4A9 EnsemblMetazoa:FBtr0074355 GeneID:32665
KEGG:dme:Dmel_CG9606 UCSC:CG9606-RA CTD:32665 FlyBase:FBgn0030789
InParanoid:Q8T4A9 OrthoDB:EOG495X81 GenomeRNAi:32665 NextBio:779732
Uniprot:Q8T4A9
Length = 412
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 118/410 (28%), Positives = 197/410 (48%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F++ A+ R+DGR E R + + FG++ GS V +G T ++ VT ++ P
Sbjct: 16 ERSFVQLAVKQNQRLDGRRSNESRDVELTFGKDWGSVAVSMGDTKVLAQVTCEMGPPALS 75
Query: 75 RPNEGTLSIFTEFSPMA--DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
RPNEG + + +A D + T + +++L +++R R SR++D ESLCV K
Sbjct: 76 RPNEGKIHLNVYLGGVAFLDEAHTTH--DQRSLKLNSLLERTFRSSRSIDLESLCVAVEK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXX 192
VW IR+++++L++ GNL DA+ IA LA+L+ FRRP+ D E+ +
Sbjct: 134 HVWCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPDVWY---KDGELRIFKKKEREFIP 190
Query: 193 XIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ HH P++VT+ + S ++DPT EE + + N+ ++C++ G
Sbjct: 191 LLFHHYPVSVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNA 250
Query: 253 SVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSV----NLKEKL 308
+IMQC R A+ + ++ A+ AL + R ++DG V N + KL
Sbjct: 251 RIIMQCARNAAVRCKSLLNFVRKAL-------ALDEECRSQGDQSVDGLVALILNTEHKL 303
Query: 309 --NEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRRDGATSNFV 366
N+ G E EK +L + E++ +P N E SK + G + D TS+++
Sbjct: 304 SYNKLMGRQK-QEQQPPPSEKMQLDNNESSETPVANEE-PSKEESAG--APMD--TSDWL 357
Query: 367 GGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEE 416
++ KA L + + K K T RK N S EE
Sbjct: 358 PHDEDSQELPMRSEASPSKAGLKGKQS-RGKYKANKKTPPRKQNHSDSEE 406
>UNIPROTKB|Q96B26 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0000178 "exosome (RNase
complex)" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0004532 "exoribonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0005730 EMBL:CH471075
GO:GO:0017091 GO:GO:0000178 EMBL:AL138706 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:BC020773 EMBL:AF025438 IPI:IPI00552920
RefSeq:NP_852480.1 UniGene:Hs.294041 ProteinModelPortal:Q96B26
SMR:Q96B26 IntAct:Q96B26 STRING:Q96B26 PhosphoSite:Q96B26
DMDM:21759409 SWISS-2DPAGE:Q96B26 PaxDb:Q96B26 PeptideAtlas:Q96B26
PRIDE:Q96B26 DNASU:11340 Ensembl:ENST00000389704 GeneID:11340
KEGG:hsa:11340 UCSC:uc001uwa.3 GeneCards:GC13P037572
HGNC:HGNC:17035 MIM:606019 neXtProt:NX_Q96B26 PharmGKB:PA134922251
InParanoid:Q96B26 EvolutionaryTrace:Q96B26 GenomeRNAi:11340
NextBio:43089 ArrayExpress:Q96B26 Bgee:Q96B26 CleanEx:HS_EXOSC8
Genevestigator:Q96B26 GermOnline:ENSG00000120699 Uniprot:Q96B26
Length = 276
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 81/269 (30%), Positives = 129/269 (47%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXX 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L +
Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV---NLKK 183
Query: 189 XXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
I H P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 184 KSYLNIRTH-PVATSFAVFD-DTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 269
>UNIPROTKB|Q2KHU3 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093
EMBL:BC112881 IPI:IPI00692861 RefSeq:NP_001073074.1
UniGene:Bt.55156 ProteinModelPortal:Q2KHU3 SMR:Q2KHU3 STRING:Q2KHU3
Ensembl:ENSBTAT00000015733 GeneID:532080 KEGG:bta:532080 CTD:11340
HOVERGEN:HBG051522 InParanoid:Q2KHU3 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ NextBio:20875602 Uniprot:Q2KHU3
Length = 276
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 79/269 (29%), Positives = 131/269 (48%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + SP+ F +G P E A + + + S+ + E LC+
Sbjct: 67 GAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXX 188
+GKL W + DL L++ GN++DA A LA+L + PE ++ E L +
Sbjct: 127 SSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEV---NLKK 183
Query: 189 XXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
I H P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 184 KSCLNIRTH-PVATSFAVFD-DTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 269
>RGD|1306169 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1306169
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI OrthoDB:EOG47M1ZJ
EMBL:CH474003 IPI:IPI00372206 UniGene:Rn.93933
Ensembl:ENSRNOT00000017993 UCSC:RGD:1306169 Uniprot:D4AE98
Length = 276
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 76/271 (28%), Positives = 128/271 (47%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVIENSQIIKKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXX 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 XXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNVRANPVATSFAVFD-DTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 272
>UNIPROTKB|E2R7U8 [details] [associations]
symbol:EXOSC8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 CTD:11340 KO:K12586 EMBL:AAEX03014203
RefSeq:XP_534492.2 Ensembl:ENSCAFT00000009898 GeneID:477300
KEGG:cfa:477300 NextBio:20852818 Uniprot:E2R7U8
Length = 276
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 78/269 (28%), Positives = 128/269 (47%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXX 188
GKL W + D+ LD GN++DA A LA+L + PE ++ E L +
Sbjct: 127 SPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEV---NLKK 183
Query: 189 XXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
I H P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 184 KSYLNIRTH-PVATSFAVFD-DTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 269
>MGI|MGI:1916889 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1916889 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 GeneTree:ENSGT00530000063093
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:AK009584 IPI:IPI00109639 RefSeq:NP_081424.3
UniGene:Mm.29253 ProteinModelPortal:Q9D753 SMR:Q9D753 STRING:Q9D753
PhosphoSite:Q9D753 PaxDb:Q9D753 PRIDE:Q9D753
Ensembl:ENSMUST00000029316 GeneID:69639 KEGG:mmu:69639
InParanoid:Q9D753 NextBio:329962 Bgee:Q9D753 CleanEx:MM_EXOSC8
Genevestigator:Q9D753 GermOnline:ENSMUSG00000027752 Uniprot:Q9D753
Length = 276
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 76/271 (28%), Positives = 128/271 (47%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXX 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 XXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ P+A +F F ++LL++DPT EE + G +T + +G +C + KPGG
Sbjct: 183 KKSYLNVRTNPVATSFAVFD-DTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 272
>UNIPROTKB|E1BUV1 [details] [associations]
symbol:LOC100858560 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI EMBL:AADN02005299
IPI:IPI00580554 Ensembl:ENSGALT00000027544 Uniprot:E1BUV1
Length = 277
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 76/269 (28%), Positives = 125/269 (46%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +L
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + E + F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQVIAKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXX 188
GKL W + D+ LD GN++DA+ A LA+L + P ++ E L +
Sbjct: 127 ADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVTINEETGLSEV----NLK 182
Query: 189 XXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+I P+A +F F +LL++DPT EE + G +T + + +C++ KPGG
Sbjct: 183 QKNPLVIRKHPVATSFAIFDESTLLIVDPTAEEEDLATGTVTVVTDEDDRLCSVHKPGGS 242
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ + + C+ A ++ KK+ D V
Sbjct: 243 PLTGAKLQDCISRAITRHKEV-KKLIDKV 270
>CGD|CAL0004911 [details] [associations]
symbol:orf19.4078 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
InterPro:IPR001247 CGD:CAL0004911 InterPro:IPR015847 Pfam:PF01138
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AACQ01000107
EMBL:AACQ01000110 Pfam:PF03725 eggNOG:COG2123 HOGENOM:HOG000229504
KO:K03678 RefSeq:XP_714111.1 RefSeq:XP_714249.1
ProteinModelPortal:Q59X53 STRING:Q59X53 GeneID:3644090
GeneID:3644245 KEGG:cal:CaO19.11559 KEGG:cal:CaO19.4078
Uniprot:Q59X53
Length = 337
Score = 277 (102.6 bits), Expect = 6.5e-24, P = 6.5e-24
Identities = 70/223 (31%), Positives = 119/223 (53%)
Query: 11 LTVNEKRFIETALSSGIRID------GRNPF-EYRKLSIKFGRED-GSSEVQLGQTHIMG 62
L++N+K ++ AL S IR+ G F ++R + IK GS E+ LG+T +M
Sbjct: 5 LSLNQKNYLIQALKSNIRLSTSTNTGGSRKFNQFRPIDIKLSNTRYGSVELSLGKTKVMV 64
Query: 63 FVTGQLVQPYRDRPNEGTLSIFTEFSP--MADPSFETGRPSESAVE----LGRIVDRGLR 116
+T ++ +PY+DRP EG ++I E + T +++ E + R +DR +R
Sbjct: 65 NITSRITEPYQDRPFEGIMTINCEIPNHIKLQSNDTTNNNNDNEDEFINLINRALDRAIR 124
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176
S AVD E+LC++AG+ VW + IDL +L+ GNL+D+ +A + +LL F++P+ ++ +
Sbjct: 125 RSNAVDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFKKPDVTINNNN 184
Query: 177 DLE----------VIVHXXXXXXXXXXI-IHHLPIAVTFGFFS 208
+IVH + I H+PI +TF F+
Sbjct: 185 TSNSSSTSGGGGNIIVHDDEMKRPFIELSILHIPICLTFSLFN 227
>TAIR|locus:2077522 [details] [associations]
symbol:AT3G07750 "AT3G07750" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:CP002686 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY HSSP:P50597 EMBL:AF325018
EMBL:BT020424 EMBL:AK119005 IPI:IPI00539704 RefSeq:NP_566318.1
RefSeq:NP_850537.1 UniGene:At.18345 ProteinModelPortal:Q9FPI0
SMR:Q9FPI0 IntAct:Q9FPI0 STRING:Q9FPI0 PaxDb:Q9FPI0 PRIDE:Q9FPI0
EnsemblPlants:AT3G07750.1 EnsemblPlants:AT3G07750.2 GeneID:819966
KEGG:ath:AT3G07750 TAIR:At3g07750 InParanoid:Q9FPI0
PhylomeDB:Q9FPI0 ProtClustDB:CLSN2688156 Genevestigator:Q9FPI0
Uniprot:Q9FPI0
Length = 286
Score = 275 (101.9 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 73/278 (26%), Positives = 140/278 (50%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FI+ ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGR-----PSESAVELGRIVDRGLRESRA-V 121
+ +P +P++G +++F + SP A+P+F GR SE A+ L R + G + A +
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTFG-GRGGEELSSELALALQRCLLGGKSGAGAGI 121
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE--DDLE 179
+ SL + GK+ W + ID ++ + GNL+DA A A+L P+ ++ E DD +
Sbjct: 122 NLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQ 181
Query: 180 VIVHXXXXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
+ +P+ VT + ++D T EE+ M ++ ++N G +
Sbjct: 182 PEIDISDEEYLQFDT-SSVPVIVTLTKVGTH--YIVDATAEEESQMSSAVSISVNRTGHI 238
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
C + K G G+ SVI+ + +A + + K+ +
Sbjct: 239 CGLTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEI 276
>TAIR|locus:2202705 [details] [associations]
symbol:AT1G60080 "AT1G60080" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC005966 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 OMA:ECINRAT EMBL:BT004614
EMBL:AK227971 IPI:IPI00541560 PIR:D96625 RefSeq:NP_176216.1
UniGene:At.36723 ProteinModelPortal:Q9ZUI4 SMR:Q9ZUI4 IntAct:Q9ZUI4
STRING:Q9ZUI4 PaxDb:Q9ZUI4 PRIDE:Q9ZUI4 EnsemblPlants:AT1G60080.1
GeneID:842303 KEGG:ath:AT1G60080 TAIR:At1g60080 InParanoid:Q9ZUI4
PhylomeDB:Q9ZUI4 ProtClustDB:CLSN2679723 Genevestigator:Q9ZUI4
Uniprot:Q9ZUI4
Length = 302
Score = 274 (101.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 74/273 (27%), Positives = 136/273 (49%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
RF E LS +R DGR + R + G DGS+ ++G T ++ + +++ P
Sbjct: 26 RFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P+EG ++I P+ P+ GRP+E+A + + + + S +D + LC+++GK
Sbjct: 86 DSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG---------GEDDLE--VIV 182
W +D++ LD G L DAA +AA+A+ + P +L GE D + +I
Sbjct: 146 AWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALIT 205
Query: 183 HXXXXXXXXXXI-IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
+ + ++P ++T ++ ++ DPT EE++M +T L+++ + +
Sbjct: 206 EKEAVNKEKRKLTLKNIPFSLTC--ILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVS 263
Query: 242 IQKPGGEGVL-QSVIMQCLRLASRMASDITKKI 273
K GG + S I C+ LA + A ++ K+I
Sbjct: 264 FYKSGGAALAYSSAIKSCVELARKRAKEL-KQI 295
>ZFIN|ZDB-GENE-050417-47 [details] [associations]
symbol:exosc7 "exosome component 7" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-050417-47 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 KO:K12589 CTD:23016 HOVERGEN:HBG051521 EMBL:BC092997
IPI:IPI00507426 RefSeq:NP_001017585.1 UniGene:Dr.84480
ProteinModelPortal:Q561W8 SMR:Q561W8 STRING:Q561W8 GeneID:550247
KEGG:dre:550247 InParanoid:Q561W8 NextBio:20879510
ArrayExpress:Q561W8 Uniprot:Q561W8
Length = 291
Score = 253 (94.1 bits), Expect = 3.4e-21, P = 3.4e-21
Identities = 69/269 (25%), Positives = 122/269 (45%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR + I+ DGS+++ LG T ++ + ++ +P
Sbjct: 10 EKVYIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVLA 130
P+EG L F + S A P FE GR E VEL + + ++D SLC+
Sbjct: 70 RPMVPDEGYLEFFVDCSANATPEFE-GRGGEELGVELSNTLYKVFNNRHSLDLRSLCICP 128
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXX 190
G+ W + +D+ +L GNL DA +IA A+L R P+ + +++ +
Sbjct: 129 GENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPFD 188
Query: 191 XXXI-IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+ + ++P VT V+D T E+A V + + G V ++K GG
Sbjct: 189 CMRLNVENVPCIVTLCKIGHRH--VVDATLQEKACSVASLLIAVTHTGMVTCVRKMGGGS 246
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVE 278
+ I + R+ + + D ++
Sbjct: 247 LDPESIFEMTEAGKRVGKSLHAPLMDLLQ 275
>UNIPROTKB|Q15024 [details] [associations]
symbol:EXOSC7 "Exosome complex component RRP42"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000178 "exosome
(RNase complex)" evidence=IDA;TAS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=NAS] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
GO:GO:0000175 EMBL:AC104165 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 eggNOG:COG2123 KO:K12589 OMA:GRSCEDY EMBL:BC012831
EMBL:D29958 IPI:IPI00014198 RefSeq:NP_055819.2 UniGene:Hs.719958
ProteinModelPortal:Q15024 SMR:Q15024 IntAct:Q15024
MINT:MINT-1457458 STRING:Q15024 PhosphoSite:Q15024 DMDM:21362903
SWISS-2DPAGE:Q15024 PaxDb:Q15024 PeptideAtlas:Q15024 PRIDE:Q15024
DNASU:23016 Ensembl:ENST00000265564 GeneID:23016 KEGG:hsa:23016
UCSC:uc003coh.1 CTD:23016 GeneCards:GC03P045016 H-InvDB:HIX0003236
HGNC:HGNC:28112 HPA:HPA036182 MIM:606488 neXtProt:NX_Q15024
PharmGKB:PA134880567 HOGENOM:HOG000229504 HOVERGEN:HBG051521
InParanoid:Q15024 OrthoDB:EOG47SSF7 PhylomeDB:Q15024 ChiTaRS:EXOSC7
EvolutionaryTrace:Q15024 GenomeRNAi:23016 NextBio:43952
ArrayExpress:Q15024 Bgee:Q15024 Genevestigator:Q15024
GermOnline:ENSG00000075914 Uniprot:Q15024
Length = 291
Score = 251 (93.4 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 72/272 (26%), Positives = 124/272 (45%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESL 126
+ P ++PNEG L F + S A P FE GR + E+ + R +VD ++L
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFE-GRGGDDLGTEIANTLYRIFNNKSSVDLKTL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS-LGGEDDLEVIVHXX 185
C+ + W + +D+ +L+ GGNL DA +IA A+L R P L E+ + I
Sbjct: 125 CISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSD 184
Query: 186 XXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+ ++P VT V+D T EEA + + ++ + G V ++K
Sbjct: 185 DPYDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMRKV 242
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
G + I + + R+ + ++ V
Sbjct: 243 GKGSLDPESIFEMMETGKRVGKVLHASLQSVV 274
>MGI|MGI:1913696 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1913696 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 EMBL:CH466587 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY CTD:23016 HOGENOM:HOG000229504
HOVERGEN:HBG051521 OrthoDB:EOG47SSF7 EMBL:AK004437 EMBL:AK011294
EMBL:AC134248 EMBL:BC094932 EMBL:BC132363 EMBL:BC145675
IPI:IPI00132723 IPI:IPI00387489 RefSeq:NP_001074657.1
UniGene:Mm.41562 ProteinModelPortal:Q9D0M0 STRING:Q9D0M0
PhosphoSite:Q9D0M0 PaxDb:Q9D0M0 PRIDE:Q9D0M0
Ensembl:ENSMUST00000026891 GeneID:66446 KEGG:mmu:66446
GeneTree:ENSGT00530000063093 InParanoid:Q9D0M0 NextBio:321717
CleanEx:MM_EXOSC7 Genevestigator:Q9D0M0
GermOnline:ENSMUSG00000025785 Uniprot:Q9D0M0
Length = 291
Score = 251 (93.4 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 72/260 (27%), Positives = 120/260 (46%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESL 126
+ P ++PNEG L F + S A P FE GR + E+ + R +VD SL
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFE-GRGGDDLGTEIANTLYRIFNNKSSVDLRSL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS-LGGEDDLEVIVHXX 185
C+ + W + +D+ +L+ GGNL DA +IA A+L R P L E+ + I
Sbjct: 125 CISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSD 184
Query: 186 XXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+ ++P VT V+D T EEA + + ++ + G V ++K
Sbjct: 185 DPYDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMRKV 242
Query: 246 GGEGVLQSVIMQCLRLASRM 265
G + I + + + R+
Sbjct: 243 GKGSLDPESIFEMMESSKRV 262
>POMBASE|SPBC17D1.03c [details] [associations]
symbol:SPBC17D1.03c "exosome subunit Rrp43 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC17D1.03c InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 PIR:T39706 RefSeq:NP_596385.1
ProteinModelPortal:Q10205 STRING:Q10205 EnsemblFungi:SPBC17D1.03c.1
GeneID:2540189 KEGG:spo:SPBC17D1.03c OMA:ECINRAT OrthoDB:EOG4WHCW5
NextBio:20801321 Uniprot:Q10205
Length = 270
Score = 244 (91.0 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 62/254 (24%), Positives = 125/254 (49%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLV 69
+ ++++ L+ +R DGR+ E+R++ I +GS+ ++ G+ + + ++
Sbjct: 20 ITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIA 79
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P+ + PNEG + E SP+ F+ G PS+ A + + + + L++S ++ +SLC+
Sbjct: 80 EPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIF 139
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXX 189
K W + D+ L+ G+ D A A A+L T + P ++DLE ++
Sbjct: 140 EKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVW--DEDLERVICASTLTR 197
Query: 190 XXXXIIHHLPIAV-TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L V +F + + L+ DPT EE + +T LN++ ++ I K GG
Sbjct: 198 PV-----QLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLGGT 252
Query: 249 GVLQSVIMQCLRLA 262
+ ++ +C+ +A
Sbjct: 253 HIQPLLLKKCIEVA 266
>RGD|1309758 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1309758
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 eggNOG:COG2123
KO:K12589 CTD:23016 HOGENOM:HOG000229504 HOVERGEN:HBG051521
OrthoDB:EOG47SSF7 EMBL:BC089995 IPI:IPI00210099
RefSeq:NP_001094195.1 UniGene:Rn.45886 ProteinModelPortal:Q5EB65
IntAct:Q5EB65 STRING:Q5EB65 GeneID:316098 KEGG:rno:316098
InParanoid:Q5EB65 NextBio:670427 Genevestigator:Q5EB65
Uniprot:Q5EB65
Length = 257
Score = 215 (80.7 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 62/219 (28%), Positives = 101/219 (46%)
Query: 49 GSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVEL 107
GS+ V+LG T I+ V ++ P +RP+EG L F + S A P FE GR + E+
Sbjct: 13 GSARVKLGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFE-GRGGDDLGTEI 71
Query: 108 GRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRR 167
+ R +VD SLC+ + W + +D+ +L+ GGNL DA +IA A+L R
Sbjct: 72 ANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRI 131
Query: 168 PECS-LGGEDDLEVIVHXXXXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMV 226
P L E+ + I + ++P VT V+D T EEA +
Sbjct: 132 PRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSL 189
Query: 227 GKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRM 265
+ ++ + G V ++K G + I + + + R+
Sbjct: 190 ASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRV 228
>DICTYBASE|DDB_G0280251 [details] [associations]
symbol:DDB_G0280251 "putative exosome complex
exonuclease" species:44689 "Dictyostelium discoideum" [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR001247 dictyBase:DDB_G0280251 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0005730 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000035 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
RefSeq:XP_641331.1 HSSP:Q9UXC0 ProteinModelPortal:Q54VM4
STRING:Q54VM4 EnsemblProtists:DDB0206469 GeneID:8622465
KEGG:ddi:DDB_G0280251 eggNOG:COG2123 KO:K12589 OMA:GRSCEDY
ProtClustDB:CLSZ2729068 Uniprot:Q54VM4
Length = 324
Score = 164 (62.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 43/143 (30%), Positives = 73/143 (51%)
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEV 180
D +++GK W + +D +LD+ GNL DA +IA ++L R P ++ GE + E+
Sbjct: 165 DDNCFSIVSGKYYWTLYVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYE-EI 223
Query: 181 IVHXXXXXXXXXXI-IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
+ I ++PI VT ++ VID T EE M ++T +N+ ++
Sbjct: 224 TFEVSDDPEDTLSLSIDNVPICVTLTKIGNQ--FVIDTTLQEELCMNARLTVGVNSLANI 281
Query: 240 CAIQKPGGEGVLQSVIMQCLRLA 262
C+IQK G +G+ + I Q + A
Sbjct: 282 CSIQKGGIDGLDPTTINQMINTA 304
Score = 107 (42.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTG 66
+++ +E FI+ + + IR DGRN +YR +I+ G +GS+ V+L QT ++ V
Sbjct: 3 KISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVKA 62
Query: 67 QL--VQP-YRDRPNEGTLSIFTEFS----PMADPSFETGRPSESA-VELGRIVDR 113
++ +Q + S FS P A P FE G+ SE +EL + ++R
Sbjct: 63 EITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFE-GKGSEFLNIELSKQLER 116
Score = 48 (22.0 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 26/103 (25%), Positives = 42/103 (40%)
Query: 301 SVNLKEKLNEPSGH-NVVNELSRKHLEKPRLASAENASSP---GNNGEGESKSSNFGRSS 356
++ L ++L H NV+ L L P +++ N ++ G+ + K + +S
Sbjct: 107 NIELSKQLERLYSHPNVIKNLK---LTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNS 163
Query: 357 RRDGATSNFVGGAASWDPYSRGV--DSD---FLKASLASRGTL 394
D S V G W Y + DSD F S+A R L
Sbjct: 164 GDDNCFS-IVSGKYYWTLYVDAIVLDSDGNLFDALSIACRSAL 205
>FB|FBgn0034065 [details] [associations]
symbol:Rrp42 "Rrp42" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652
"nuclear lamina" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:AE013599 GO:GO:0005737 GO:GO:0022008 GO:GO:0016787
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0005652 GO:GO:0000176
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 KO:K12589
GeneTree:ENSGT00530000063093 EMBL:BT024331 RefSeq:NP_725517.2
UniGene:Dm.16025 SMR:Q29QQ9 IntAct:Q29QQ9 STRING:Q29QQ9
EnsemblMetazoa:FBtr0087206 GeneID:36766 KEGG:dme:Dmel_CG8395
UCSC:CG8395-RA CTD:36766 FlyBase:FBgn0034065 InParanoid:Q29QQ9
OMA:DRNNKTP OrthoDB:EOG444J25 GenomeRNAi:36766 NextBio:800273
Uniprot:Q29QQ9
Length = 296
Score = 211 (79.3 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 72/288 (25%), Positives = 125/288 (43%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL + A + +LC
Sbjct: 66 IDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFNYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHXXX 186
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + D + ++
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDN 185
Query: 187 XXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA-NGD--VCAIQ 243
I +P+ VT +++DP+ EE M +++ NG +
Sbjct: 186 PYDCTRIGIETVPLLVTVCKIGD--YVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTH 243
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKR 291
GG + + + CL L + + + + + N E+ +KR
Sbjct: 244 LTGGGAMHRDTMRNCLELGLAIGEHLDRLL---TKMLNLEQQRVGLKR 288
>UNIPROTKB|Q95Z11 [details] [associations]
symbol:RRP45 "Rrp45p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 EMBL:AJ308999
ProteinModelPortal:Q95Z11 IntAct:Q95Z11 STRING:Q95Z11
Uniprot:Q95Z11
Length = 363
Score = 204 (76.9 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 72/246 (29%), Positives = 112/246 (45%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEV-QLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++S++F V + G + + + LV
Sbjct: 15 LTQREVEFTKSAWLAGLRPDQRTAQQMREVSVEFPLLSRDVVVVRCGGSVVTAAIATALV 74
Query: 70 QPYRDRPNEGTLS-----IFTEF-SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
+P RP G L + TE SP AD S + L ++R +R +DT
Sbjct: 75 EPTPQRPKHGLLHFSVRRLHTEKDSPAADGSTQKN--------LVAFLERLVRTGGVIDT 126
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
LCVL G+ VW++ +++ I+++ GN DAA A +A L+ RRPE ++ G VIVH
Sbjct: 127 AGLCVLPGQKVWSLTVNVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSS---VIVH 183
Query: 184 XXXXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
+ H P+ TF + + PT E+A+ L+A G Q
Sbjct: 184 PPHEREPVPLSVQHTPLPFTFA-------ITMAPTEREKAL---NHQRALSATGSSSGPQ 233
Query: 244 KPGGEG 249
G G
Sbjct: 234 PSSGVG 239
>GENEDB_PFALCIPARUM|MAL13P1.204 [details] [associations]
symbol:MAL13P1.204 "exoribonuclease PH,
putative" species:5833 "Plasmodium falciparum" [GO:0008033 "tRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0008033 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:AL844509 Pfam:PF03725 SUPFAM:SSF55666 KO:K12589
RefSeq:XP_001350126.1 ProteinModelPortal:Q8IDT4
EnsemblProtists:MAL13P1.204:mRNA GeneID:813762 KEGG:pfa:MAL13P1.204
EuPathDB:PlasmoDB:PF3D7_1340100 HOGENOM:HOG000283313 OMA:DELEYAR
ProtClustDB:CLSZ2433350 Uniprot:Q8IDT4
Length = 278
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 61/273 (22%), Positives = 118/273 (43%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+IE +++ IRIDGR YR + I DGSS V + +++ + L+ P D
Sbjct: 6 YIEDSINCNIRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPDVD 65
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
+EG +++ + S R + ++ + L ++ + LC+L GK
Sbjct: 66 TYDEGNVNLQID----CPASVAANRIKKDHLQTMTTIIYNLCIKNNINKKILCILPGKFA 121
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W++ I++ +L+ GG L+D +IA +L P E + E H I
Sbjct: 122 WSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKPKKEIEEENTFHEISNKDYQLEI 181
Query: 195 I---H------HLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+ H ++PI ++ G +++ + D + EE ++ + + G A K
Sbjct: 182 VENEHVNFPYENIPICISIGEINNK--YIYDMSKVEEELVQNIFVVAITSKGKCVAFHKL 239
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
G + S I+ +S+++ + KI A++
Sbjct: 240 YGISMEISSILNITENSSKISHTLFDKIHQALD 272
>UNIPROTKB|Q8IDT4 [details] [associations]
symbol:MAL13P1.204 "Exoribonuclease PH, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008033 "tRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0008033 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:AL844509 Pfam:PF03725 SUPFAM:SSF55666 KO:K12589
RefSeq:XP_001350126.1 ProteinModelPortal:Q8IDT4
EnsemblProtists:MAL13P1.204:mRNA GeneID:813762 KEGG:pfa:MAL13P1.204
EuPathDB:PlasmoDB:PF3D7_1340100 HOGENOM:HOG000283313 OMA:DELEYAR
ProtClustDB:CLSZ2433350 Uniprot:Q8IDT4
Length = 278
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 61/273 (22%), Positives = 118/273 (43%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+IE +++ IRIDGR YR + I DGSS V + +++ + L+ P D
Sbjct: 6 YIEDSINCNIRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPDVD 65
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
+EG +++ + S R + ++ + L ++ + LC+L GK
Sbjct: 66 TYDEGNVNLQID----CPASVAANRIKKDHLQTMTTIIYNLCIKNNINKKILCILPGKFA 121
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXXXXXI 194
W++ I++ +L+ GG L+D +IA +L P E + E H I
Sbjct: 122 WSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKPKKEIEEENTFHEISNKDYQLEI 181
Query: 195 I---H------HLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+ H ++PI ++ G +++ + D + EE ++ + + G A K
Sbjct: 182 VENEHVNFPYENIPICISIGEINNK--YIYDMSKVEEELVQNIFVVAITSKGKCVAFHKL 239
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
G + S I+ +S+++ + KI A++
Sbjct: 240 YGISMEISSILNITENSSKISHTLFDKIHQALD 272
>UNIPROTKB|Q8MPG3 [details] [associations]
symbol:EAP2 "Exosome-associated protein 2" species:5691
"Trypanosoma brucei" [GO:0000178 "exosome (RNase complex)"
evidence=IDA] InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG2123 EMBL:AJ430833
ProteinModelPortal:Q8MPG3 IntAct:Q8MPG3 STRING:Q8MPG3
HOGENOM:HOG000259881 ProtClustDB:CLSZ2439596 Uniprot:Q8MPG3
Length = 294
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 53/199 (26%), Positives = 94/199 (47%)
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES--RAV 121
V+G P D+P+EG L++ +A P F++ + A L R V R +R + +
Sbjct: 70 VSGVFGPPPSDQPDEGRLTV-----DVAAPFFQSHSTDQVAAAL-REVARFVRSTIISCM 123
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
D L ++ G+ W ++++L IL+ G L AA A +A++ P L D++E
Sbjct: 124 DLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPNGDEVE-- 181
Query: 182 VHXXXXXXXXXXIIHHLPIAVTFGFF---SSESLLVIDPTHHEEAVMVGKMTATLN-ANG 237
H +P+AVT G + +S ++D EE+V+ G +T L+ NG
Sbjct: 182 --------SRRLRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVLSDENG 233
Query: 238 DVCAIQKPGGEGVLQSVIM 256
+ +Q G + S+++
Sbjct: 234 IITFVQS--GSYSISSLLL 250
>UNIPROTKB|F1RSQ6 [details] [associations]
symbol:EXOSC8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR001247 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GeneTree:ENSGT00530000063093 EMBL:CU024873
Ensembl:ENSSSCT00000010255 Uniprot:F1RSQ6
Length = 113
Score = 112 (44.5 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGSS V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA 104
P D P++G + + SP+ F +G P E A
Sbjct: 67 GAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEEA 102
>WB|WBGene00009289 [details] [associations]
symbol:exos-7 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR001247
Pfam:PF01138 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 InterPro:IPR020568 SUPFAM:SSF54211
KO:K12589 OMA:GRSCEDY GeneTree:ENSGT00530000063093 EMBL:Z92838
EMBL:Z92832 PIR:T21601 RefSeq:NP_508024.2 ProteinModelPortal:G5EDS8
SMR:G5EDS8 EnsemblMetazoa:F31D4.1.1 EnsemblMetazoa:F31D4.1.2
GeneID:180369 KEGG:cel:CELE_F31D4.1 CTD:180369 WormBase:F31D4.1
NextBio:909072 Uniprot:G5EDS8
Length = 312
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 49/176 (27%), Positives = 85/176 (48%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQT-HIMGFVTG 66
L+ +EK F+ T + IR DGR+ ++R++ ++ G +GS VQLGQT ++ +
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 67 QLVQPY---RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
+L + Y ++ + ++ +FS A F E A EL S+A+D
Sbjct: 65 EL-ESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121
Query: 124 -ESLCV--LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176
+L LA W I +D+ +L G++ DA +IA + +L PE + +D
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDD 177
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 465 442 0.00090 118 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 614 (65 KB)
Total size of DFA: 243 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.28u 0.10s 41.38t Elapsed: 00:00:02
Total cpu time: 41.29u 0.10s 41.39t Elapsed: 00:00:02
Start: Thu May 9 21:38:41 2013 End: Thu May 9 21:38:43 2013