BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043337
(465 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255580609|ref|XP_002531128.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
gi|223529292|gb|EEF31262.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
Length = 463
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 316/462 (68%), Positives = 380/462 (82%), Gaps = 5/462 (1%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ R+A+TWR++VNEK+FIE+AL S +RIDGRN E+RKL+IKFGREDGSSEVQLGQTH+
Sbjct: 1 MEGRVASTWRMSVNEKKFIESALDSDLRIDGRNSHEFRKLTIKFGREDGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVT QLVQPYRDRPNEG+LSIF+EFSPMADPSFE GRP ESAVELGRI+DRGLRESRA
Sbjct: 61 MGFVTSQLVQPYRDRPNEGSLSIFSEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALA+LLTFRRPEC+LGGED +V
Sbjct: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGEDGQQV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
IVHPPE +EPLPLI+HHLPIAVTF FFSSE +V+DPTH+EEAVM G+MT T+NANGD+C
Sbjct: 181 IVHPPEVKEPLPLIVHHLPIAVTFAFFSSEHTMVVDPTHNEEAVMTGRMTVTVNANGDIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
+IQK GGEGV+QS IM CLR+ASR A ITKKIKDAVE YNTERALRKIKRH TS+ ++
Sbjct: 241 SIQKAGGEGVMQSRIMHCLRVASRNAESITKKIKDAVEAYNTERALRKIKRHSTSVAVNV 300
Query: 301 S--VNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRR 358
S ++++E N+P ++E+SR +E+ +L S E++ S N + +SS G +S R
Sbjct: 301 STAIDVRELENKPFIQKGISEISRHQMERLKLTSEESSVSQSNGIDSGLRSSEQGGTSNR 360
Query: 359 DGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEESP 418
+G +NF+GG + WDPYS+GVDSDFLKASLAS G P K++ GE+K ++ E++P
Sbjct: 361 EGNATNFLGGPSRWDPYSKGVDSDFLKASLASHGVSAPNKEK---GGEQKSTQAVDEKAP 417
Query: 419 GDVIPTTSAMDVSETGVHKGGEKTLKDAVKPKHKRKKKAFSS 460
P TS + ETG+ GEKTLKDAVKPK+KR+K+A SS
Sbjct: 418 ETAKPATSVGETFETGIQTSGEKTLKDAVKPKNKRRKRASSS 459
>gi|225460698|ref|XP_002270464.1| PREDICTED: exosome complex component rrp45-like [Vitis vinifera]
Length = 467
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 302/450 (67%), Positives = 362/450 (80%), Gaps = 3/450 (0%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLA+T+R+TVNEK+FIE AL S +RIDGR PF++R++SIKFGREDGSSEVQLGQTH+
Sbjct: 1 MEQRLASTFRMTVNEKKFIEKALLSDLRIDGRRPFDFRRISIKFGREDGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVTGQL+QPYRDRPNEGTLSI+TEFSPMADPSFE GRP E+AVELGR++DRGLRESRA
Sbjct: 61 MGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VD ESLCVLAGKLVW+IRIDLHI+DNGGNL+DAANIAALA+LLTFRRPECS GGED E+
Sbjct: 121 VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQEL 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
IVHPPE REPLPLI+HHLPIAVTF +E+++VIDPTH EEAVM G+MTATLN NGDVC
Sbjct: 181 IVHPPEVREPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
AIQK GGEG++QSVIMQCLR+AS A+DIT KIK+AVE +NTERALRKIKRH +SI +D
Sbjct: 241 AIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTERALRKIKRHSSSIAVDV 300
Query: 301 S---VNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
S ++E N+ VVNELS H+E+ ++ S E+ + ++ E +++ S GR++R
Sbjct: 301 SGPGAKMRENKNQSVDEKVVNELSSHHMERLKMESEESCVTQSSDVEVKTQLSEQGRTNR 360
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEES 417
D T +F+GG +SWDPYS+G+DSDFLKASLAS G + KQ+D GE K + K EE
Sbjct: 361 SDENTRSFIGGPSSWDPYSKGIDSDFLKASLASHGLIKQNTKQKDSRGEMKAPDVKSEEP 420
Query: 418 PGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
D+ P M T GEKTLKDAV
Sbjct: 421 NADIDPALCPMKTVGTTPQTNGEKTLKDAV 450
>gi|147779414|emb|CAN74356.1| hypothetical protein VITISV_000912 [Vitis vinifera]
Length = 476
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 302/459 (65%), Positives = 362/459 (78%), Gaps = 12/459 (2%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---------EDGSS 51
M+ RLA+T+R+TVNEK+FIE AL S +RIDGR PF++R++SIKFGR EDGSS
Sbjct: 1 MEQRLASTFRMTVNEKKFIEKALLSDLRIDGRRPFDFRRISIKFGRQVFIRTICAEDGSS 60
Query: 52 EVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIV 111
EVQLGQTH+MGFVTGQL+QPYRDRPNEGTLSI+TEFSPMADPSFE GRP E+AVELGR++
Sbjct: 61 EVQLGQTHVMGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVI 120
Query: 112 DRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171
DRGLRESRAVD ESLCVLAGKLVW+IRIDLHI+DNGGNL+DAANIAALA+LLTFRRPECS
Sbjct: 121 DRGLRESRAVDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECS 180
Query: 172 LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTA 231
GGED E+IVHPPE REPLPLI+HHLPIAVTF +E+++VIDPTH EEAVM G+MTA
Sbjct: 181 FGGEDGQELIVHPPEVREPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTA 240
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKR 291
TLN NGDVCAIQK GGEG++QSVIMQCLR+AS A+DIT KIK+AVE +NTERALRKIKR
Sbjct: 241 TLNTNGDVCAIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTERALRKIKR 300
Query: 292 HPTSITLDGS---VNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESK 348
H +SI +D S ++E N+ VVNELS H+E+ ++ S E+ + ++ E +++
Sbjct: 301 HSSSIAVDVSGPGAKMRENKNQSVDEKVVNELSSHHMERLKMESEESCVTQSSDVEVKTQ 360
Query: 349 SSNFGRSSRRDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERK 408
S GR++R D T +F+GG +SWDPYS+G+DSDFLKASLAS G + KQ+D GE K
Sbjct: 361 LSEQGRTNRSDENTRSFIGGPSSWDPYSKGIDSDFLKASLASHGLIKQNTKQKDSRGEMK 420
Query: 409 PNESKPEESPGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
+ K EE D+ P M T GEKTLKDAV
Sbjct: 421 APDVKSEEPNADIDPALCPMKTVGTTPQTNGEKTLKDAV 459
>gi|357447261|ref|XP_003593906.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
gi|355482954|gb|AES64157.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
Length = 449
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/450 (64%), Positives = 349/450 (77%), Gaps = 20/450 (4%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLAN WRLTVNEK+FIE+AL S +R+DGR P +YRKL+IKFGR+DGS+E+QLG+T +
Sbjct: 1 MEQRLANCWRLTVNEKKFIESALLSELRVDGRGPLDYRKLNIKFGRDDGSAEIQLGETRV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M FV+ QLVQPY+DRPNEGTLSIFTEFSPMADPSFE GRP ESAVELGRI+DRGLRESRA
Sbjct: 61 MSFVSAQLVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
+DTESLC+L+ KLVWAIRID+HILDN GNLVDAANIAALASL TFRRPECSLGGED +V
Sbjct: 121 IDTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSLGGEDGQQV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
+VHPPE REPLPLIIHHLP+AVTFGFFS+E+L+V+DPT+HEEAVM G+MTATLNANGDVC
Sbjct: 181 VVHPPEVREPLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLD- 299
AIQKPGG+GV Q VIM CL+LA A DIT KI DAVE +N ERAL+KIKRH +S+ +D
Sbjct: 241 AIQKPGGQGVFQRVIMHCLKLAHVKAGDITSKINDAVEKHNNERALQKIKRHSSSVAVDV 300
Query: 300 --GSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
+ L K N+ G + HL++ +L N E ++ SS +SS+
Sbjct: 301 CGATATLGGKQNQSHG-----DKEGSHLDQSKLKGETNFM------ECDATSSGQVQSSK 349
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEES 417
+DG++ NF GG +SWDPYS V+SD LKASLASRG LTP KQ+D +E+KPEE
Sbjct: 350 KDGSSKNFTGGPSSWDPYSECVNSDLLKASLASRGQLTP-SKQKDSR-----HETKPEEP 403
Query: 418 PGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
++ ++ +D + T KTLKDAV
Sbjct: 404 VQEIKTVSAPLDTALTAGQSNEGKTLKDAV 433
>gi|356539154|ref|XP_003538065.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 438
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/447 (64%), Positives = 342/447 (76%), Gaps = 25/447 (5%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLANTWR+ +N+K+FIETAL S +R+DGR P +YRKL++K ++DGS+EV LGQTH+
Sbjct: 1 MEQRLANTWRMPLNDKKFIETALLSDLRLDGRRPSDYRKLTVKLAKQDGSAEVHLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M FVT QLV+PYRDRPNEG+LSIFTEFSPMADPSF+ GRPS++AVELGR+VDRGLRESRA
Sbjct: 61 MTFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFDPGRPSDAAVELGRVVDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
+DTESLCVL+GKLVWAIR+D+HILDN GNLVDAANIAALASLLTFRRPECSL GED +V
Sbjct: 121 IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALASLLTFRRPECSLAGEDGQDV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
+VHPPEER+P+PLIIHHLPIAVTFGFFS+E+LLVIDPTHHEE VM G+MTATLN+NGDVC
Sbjct: 181 VVHPPEERDPIPLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
AIQKPGGE V SVIM CL+LA A+DIT KI+DAVE +N ERALRKIKRH +S+ +D
Sbjct: 241 AIQKPGGESVSHSVIMHCLKLAHVKATDITTKIRDAVEIHNNERALRKIKRHSSSVAVDV 300
Query: 301 SVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRRDG 360
EK N+L HL+K +L E + E ++S G+ +DG
Sbjct: 301 C---GEKQ---------NQLDASHLDKLKLEEEEESPM-------ECEASPSGQEQSKDG 341
Query: 361 ATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEESPGD 420
+ NF GG +SWDPYS V+SD LKASLASRG P KQ+D E KP E P E D
Sbjct: 342 VSKNFTGGPSSWDPYSECVNSDLLKASLASRGPSVP-SKQKDSRRETKPKEP-PLEIKTD 399
Query: 421 VIPTTSAMDVSETGVHKGGEKTLKDAV 447
P A+ + +KG KTLKDAV
Sbjct: 400 STPINKALTAGQN--NKG--KTLKDAV 422
>gi|449442545|ref|XP_004139042.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 452
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 293/450 (65%), Positives = 346/450 (76%), Gaps = 19/450 (4%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLANTWRL+ NEK+FIETAL S +R+DGR PF+YR L+I FG++DGSSEVQLGQTH+
Sbjct: 1 MEQRLANTWRLSANEKKFIETALLSDLRVDGRGPFDYRNLTINFGKDDGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVT QLVQPYRDRPNEGTLSI+TEFSPMADPSFE GRP ESAVELGR++DRGLRESRA
Sbjct: 61 MGFVTAQLVQPYRDRPNEGTLSIYTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCV++GK VWAIR+DLHILDNGGNLVDAAN+AALA+L TFRRPECSL G+D EV
Sbjct: 121 VDTESLCVVSGKSVWAIRVDLHILDNGGNLVDAANVAALAALSTFRRPECSLSGDDGQEV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
IVHPPE REPLPLIIHHLPIAVTF FF SES+LVIDPTH EEAVM G+MT TLNAN DVC
Sbjct: 181 IVHPPEVREPLPLIIHHLPIAVTFAFFRSESILVIDPTHCEEAVMGGRMTVTLNANNDVC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLD- 299
AIQK GGEGVL+SVIMQCLR+AS A DIT KIK+AVETY++ R LRKIKRHP S+ LD
Sbjct: 241 AIQKAGGEGVLKSVIMQCLRIASVKAGDITTKIKNAVETYSSARQLRKIKRHP-SVNLDV 299
Query: 300 --GSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
G+ +LK+ G +N+ + + + S N+ S+N G+ +
Sbjct: 300 GGGTGSLKDSQGISDGQKSIND---------QESVVSQSGSIKNDA-----STNQGQLDK 345
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEES 417
RD NF+GG + WDP+S+G DSDFLKA+LASRG LT KK +D + E +ES +E
Sbjct: 346 RDSDAKNFIGGPSCWDPHSKGADSDFLKATLASRGNLTATKK-EDLSDEMMSSESMVDEQ 404
Query: 418 PGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
V + ++T + G+KTLKDAV
Sbjct: 405 EAKVDEVNLSPVAAKTLSEENGKKTLKDAV 434
>gi|449526860|ref|XP_004170431.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 454
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 293/452 (64%), Positives = 345/452 (76%), Gaps = 21/452 (4%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLANTWRL+ NEK+FIETAL S +R+DGR PF+YR L+I FG++DGSSEVQLGQTH+
Sbjct: 1 MEQRLANTWRLSANEKKFIETALLSDLRVDGRGPFDYRNLTINFGKDDGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVT QLVQPYRDRPNEGTLSI+TEFSPMADPSFE GRP ESAVELGR++DRGLRESRA
Sbjct: 61 MGFVTAQLVQPYRDRPNEGTLSIYTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCV++GK VWAIR+DLHILDNGGNLVDAAN+AALA+L TFRRPECSL G+D EV
Sbjct: 121 VDTESLCVVSGKSVWAIRVDLHILDNGGNLVDAANVAALAALSTFRRPECSLSGDDGQEV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
IVHPPE REPLPLIIHHLPIAVTF FF SES+LVIDPTH EEAVM G+MT TLNAN DVC
Sbjct: 181 IVHPPEVREPLPLIIHHLPIAVTFAFFRSESILVIDPTHCEEAVMGGRMTVTLNANNDVC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK--DAVETYNTERALRKIKRHPTSITL 298
AIQK GGEGVL+SVIMQCLR+AS A DIT KIK AVETY++ R LRKIKRHP S+ L
Sbjct: 241 AIQKAGGEGVLKSVIMQCLRIASVKAGDITTKIKMQAAVETYSSARQLRKIKRHP-SVNL 299
Query: 299 D---GSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRS 355
D G+ +LK+ G +N+ + + + S N+ S+N G+
Sbjct: 300 DVGGGTGSLKDSQGISDGQKSIND---------QESVVSQSGSIKNDA-----STNQGQL 345
Query: 356 SRRDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPE 415
+RD NF+GG + WDP+S+G DSDFLKA+LASRG LT KK +D + E +ES +
Sbjct: 346 DKRDVDAKNFIGGPSCWDPHSKGADSDFLKATLASRGNLTATKK-EDLSDEMMSSESMVD 404
Query: 416 ESPGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
E V + ++T + G+KTLKDAV
Sbjct: 405 EQEAKVDEVNLSPVAAKTLSEENGKKTLKDAV 436
>gi|15232342|ref|NP_191609.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|42572741|ref|NP_974466.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|334186154|ref|NP_001190143.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|28393589|gb|AAO42214.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|28973593|gb|AAO64121.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|113196170|gb|ABI31441.1| CER7 [Arabidopsis thaliana]
gi|332646547|gb|AEE80068.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646548|gb|AEE80069.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646549|gb|AEE80070.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
Length = 438
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/451 (60%), Positives = 335/451 (74%), Gaps = 27/451 (5%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLAN WRLTVNE +F+ETAL S +R+DGR ++YRKL+IKFG+E GSSEVQLGQTH+
Sbjct: 1 MEGRLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVT QLVQPY+DRPNEG+LSIFTEFSPMADPSFE GRP ESAVELGRI+DRGLRESRA
Sbjct: 61 MGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCVLAGK+VW++RIDLHILDNGGNLVDAANIAALA+L+TFRRP+C++GGE+ EV
Sbjct: 121 VDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
I+HP EEREPLPLIIHHLPIA TFGFF+ +++V+DPT+ EEAVM G+MT T+NANGD+C
Sbjct: 181 IIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
AIQKPG EGV QSVI+ CLRLAS A+ TK I++ VE YN ER+L+K+KRHPT +
Sbjct: 241 AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEV 300
Query: 301 S---VNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
S V +KE+ + S E+SR+H+E+ +L++ E RSS+
Sbjct: 301 SGPTVAVKEEHRKSSDQERAAEISREHVERLKLSTEEV------------------RSSK 342
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGT-LTPKKKQQDPTGERKPNESKPEE 416
+ A +NF GG ++WDPYS +D D LK SLASRG +T + G + E
Sbjct: 343 EEEA-ANFKGGPSNWDPYSEAMDVDSLKVSLASRGDPVTKSSSTKKMNGSGNAQKVGVEI 401
Query: 417 SPGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
S +V D HK GE TLKDAV
Sbjct: 402 SVEEVTGELGKKDTK----HKDGEMTLKDAV 428
>gi|224054532|ref|XP_002298307.1| predicted protein [Populus trichocarpa]
gi|222845565|gb|EEE83112.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/377 (71%), Positives = 309/377 (81%), Gaps = 6/377 (1%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRE--DGSSEVQLGQT 58
MD RLANTWRLTVNEK+FIETAL+S +RIDGRNP EYRK++IKFGR GSSEVQLGQT
Sbjct: 1 MDGRLANTWRLTVNEKKFIETALASNLRIDGRNPLEYRKITIKFGRRVAYGSSEVQLGQT 60
Query: 59 HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES 118
H+MGFVTGQLVQPY+DR NEG L IFTEFSPMADPSFE GRP ESAVELGRIVDRGLRES
Sbjct: 61 HVMGFVTGQLVQPYQDRRNEGMLLIFTEFSPMADPSFEPGRPGESAVELGRIVDRGLRES 120
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
RAVDTESLCVL+GKLVWAIRIDLHILDNGGNLVDAANIAALA+LLTFRRPEC+LGG+D
Sbjct: 121 RAVDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQ 180
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
EV VHPPEEREPLPLI+HHLPIA+TF F SE +V+DPTH EEAVM G+MT T+NA GD
Sbjct: 181 EVTVHPPEEREPLPLIVHHLPIAITFAFLGSEGKMVVDPTHSEEAVMGGRMTVTVNAIGD 240
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITL 298
+C+IQK GGEGV QSVIM CL+LAS A ITKKI +AVE Y+TERALRKIKRHPTS
Sbjct: 241 ICSIQKAGGEGVPQSVIMHCLQLASMSAESITKKINNAVEAYSTERALRKIKRHPTSAAG 300
Query: 299 DGSV---NLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRS 355
+ SV ++KE+ N+ +ELSR H+E+ RL S E SS N+ +G+ KSS G +
Sbjct: 301 NVSVAGSDVKEQ-NKTVEQVGGSELSRHHMERLRLVSEETCSSRSNDNDGDIKSSEQGGT 359
Query: 356 SRRDGATSNFVGGAASW 372
S + +F+GG +SW
Sbjct: 360 SGGESNAVSFLGGPSSW 376
>gi|297817356|ref|XP_002876561.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
gi|297322399|gb|EFH52820.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/455 (60%), Positives = 334/455 (73%), Gaps = 35/455 (7%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLAN WRLTVNE +F+ETAL S +R+DGR ++YRKL+IKFG+E GSSEVQLGQTH+
Sbjct: 1 MEGRLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVT Q+VQPY+DRPNEG+LSIFTEFSPMADPSFE GRP ESAVELGRI+DRGLRESRA
Sbjct: 61 MGFVTAQMVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLC+LAGK+VW++RIDLHILDNGGNLVDAANIAALA+L+TFRRP+C++GGE+ EV
Sbjct: 121 VDTESLCILAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
I+HPPEEREPLPLIIHHLPIA TFGFF+ +++V+DPT+ EEAVM G+MT T+NANGD+C
Sbjct: 181 IIHPPEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
AIQKPG EGV QSVI+ CLRLAS A+ TK I++ VE YN ER+L+K+KRHPT +
Sbjct: 241 AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNRERSLQKVKRHPTLAKSEV 300
Query: 301 S---VNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
S V +KE+ + S E+SR+H+E+ +L+ E RSS+
Sbjct: 301 SGPTVAVKEEYRKSSDQEKAAEISREHVERLKLSPEEL------------------RSSK 342
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDP-----TGERKPNES 412
AT NF GG ++WDPYS +D D LK SLAS G K + ++ E
Sbjct: 343 EQEAT-NFKGGPSNWDPYSEAMDVDSLKVSLASEGDSITKSSSKKKTNGSGNAQKDGGEI 401
Query: 413 KPEESPGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
EE GD+ + HK GE TLKDAV
Sbjct: 402 SVEEVTGDLGKKDTK--------HKDGEMTLKDAV 428
>gi|296081159|emb|CBI18185.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/390 (66%), Positives = 307/390 (78%), Gaps = 3/390 (0%)
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVTGQL+QPYRDRPNEGTLSI+TEFSPMADPSFE GRP E+AVELGR++DRGLRESRA
Sbjct: 1 MGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGEAAVELGRVIDRGLRESRA 60
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VD ESLCVLAGKLVW+IRIDLHI+DNGGNL+DAANIAALA+LLTFRRPECS GGED E+
Sbjct: 61 VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDGQEL 120
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
IVHPPE REPLPLI+HHLPIAVTF +E+++VIDPTH EEAVM G+MTATLN NGDVC
Sbjct: 121 IVHPPEVREPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATLNTNGDVC 180
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
AIQK GGEG++QSVIMQCLR+AS A+DIT KIK+AVE +NTERALRKIKRH +SI +D
Sbjct: 181 AIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTERALRKIKRHSSSIAVDV 240
Query: 301 S---VNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
S ++E N+ VVNELS H+E+ ++ S E+ + ++ E +++ S GR++R
Sbjct: 241 SGPGAKMRENKNQSVDEKVVNELSSHHMERLKMESEESCVTQSSDVEVKTQLSEQGRTNR 300
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEES 417
D T +F+GG +SWDPYS+G+DSDFLKASLAS G + KQ+D GE K + K EE
Sbjct: 301 SDENTRSFIGGPSSWDPYSKGIDSDFLKASLASHGLIKQNTKQKDSRGEMKAPDVKSEEP 360
Query: 418 PGDVIPTTSAMDVSETGVHKGGEKTLKDAV 447
D+ P M T GEKTLKDAV
Sbjct: 361 NADIDPALCPMKTVGTTPQTNGEKTLKDAV 390
>gi|356497351|ref|XP_003517524.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 350
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/374 (64%), Positives = 290/374 (77%), Gaps = 30/374 (8%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RLANTWR+ N+ +FIETAL S +R+DGR P +YRKL+IK ++DGS+EV LGQTH+
Sbjct: 1 MEQRLANTWRMPRNDNKFIETALLSDLRVDGRRPSDYRKLTIKLAKQDGSAEVHLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
+ FVT QLV+PYRDRPNEG+LSIFTEFSPMADPSFE GRP+++AVELGR+VDRGLRESRA
Sbjct: 61 ITFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFEPGRPTDAAVELGRVVDRGLRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
+DTESLCVL+GKLVWAIR+D+HILDN GNLVDAANIAAL SLLTFRRPECSL GED +V
Sbjct: 121 IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALVSLLTFRRPECSLTGEDGQDV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
+VHPPEER+P+PLIIHHLPIAVTFGFFS+E+LLVIDPTHHEE VM G+MTATLN+NGDVC
Sbjct: 181 VVHPPEERDPIPLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGDVC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLD- 299
AIQKPGGE V QSVIM CL+LA A+DIT KIKDAVE +N ER LRKIKRH +S +D
Sbjct: 241 AIQKPGGESVSQSVIMHCLKLAHVKATDITTKIKDAVEIHNNERMLRKIKRHSSSAAVDV 300
Query: 300 -GSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRR 358
G+ A +P + + E +++ G+ +
Sbjct: 301 CGAT----------------------------AGFGGKQNPLDGDDLECRATPSGQQHSK 332
Query: 359 DGATSNFVGGAASW 372
DGA+ NF GG +SW
Sbjct: 333 DGASKNFTGGPSSW 346
>gi|118486664|gb|ABK95169.1| unknown [Populus trichocarpa]
Length = 403
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 266/407 (65%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MGFVTGQLVQPY+DR NEG L IFTEFSPMADPSFE GRP ESAVELGRIVDRGLRESRA
Sbjct: 1 MGFVTGQLVQPYQDRRNEGMLLIFTEFSPMADPSFEPGRPGESAVELGRIVDRGLRESRA 60
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCVL+GKLVWAIRIDLHILDNGGNLVDAANIAALA+LLTFRRPEC+LGG+D EV
Sbjct: 61 VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGDDGQEV 120
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
VHPPEEREPLPLI+HHLPIA+TF F SE +V+DPTH EEAVM G+MT T+NA GD+C
Sbjct: 121 TVHPPEEREPLPLIVHHLPIAITFAFLGSEGKMVVDPTHSEEAVMGGRMTVTVNAIGDIC 180
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
+IQK GGEGV QSVIM CL+LAS A ITKKI +AVE Y+TERALRKIKRHPTS +
Sbjct: 181 SIQKAGGEGVPQSVIMHCLQLASMSAESITKKINNAVEAYSTERALRKIKRHPTSAAGNV 240
Query: 301 SV---NLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
SV ++KE+ N+ +ELSR H+E+ RL S E SS N+ +G+ KSS G +S
Sbjct: 241 SVAGSDVKEQ-NKTVEQVGGSELSRHHMERLRLVSEETCSSRSNDNDGDIKSSEQGGTSG 299
Query: 358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKP--NESKPE 415
+ +F+GG +SWDPY +GVD D LK ++ASRG T +Q++ + E P + KP
Sbjct: 300 GESNAVSFLGGPSSWDPYLKGVDDDSLKPNVASRGISTQHMEQKE-SKENSPKMDTEKPT 358
Query: 416 ESPGDVIPTTSAMDVSETGVHKGGEKTLKDAVKPKHKRKKKAFSSTA 462
E D+ T A D S T + GEKTLKDAVKPK+KR+K+A S A
Sbjct: 359 E---DIKQATLATDTSGTALETNGEKTLKDAVKPKNKRRKRASSMNA 402
>gi|413937195|gb|AFW71746.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
gi|413937196|gb|AFW71747.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 446
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 249/443 (56%), Positives = 321/443 (72%), Gaps = 20/443 (4%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL 68
WR TVNE+ FIE AL S +R+DGR+ F++RKL I FGREDGSSEVQLG+TH+MG+VT QL
Sbjct: 6 WRPTVNERDFIECALQSDLRVDGRHSFDFRKLKITFGREDGSSEVQLGETHVMGYVTVQL 65
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
VQPYRDRPNEGTL+IFTEFSPMADPSFE GRP E A+ELGR++DRGLRESRAVD ESLCV
Sbjct: 66 VQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCV 125
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++GG+D +V VH PE R
Sbjct: 126 VAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDPEVR 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+PLPL IHH+PIAVTF +F +++V+DPT+ EEAVM G+MTA +N+NGDVCAIQK GGE
Sbjct: 186 DPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGE 245
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKL 308
GV+ SVIMQCLR+AS A+DIT KIK AV++Y TE+AL+K+KR PTS+ +N+
Sbjct: 246 GVMSSVIMQCLRIASVKAADITSKIKKAVDSYTTEKALKKVKRLPTSVP--QKINVTNVT 303
Query: 309 NEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSS-RRDGATSNFVG 367
+ G EL ++ ++ + + S N + ++S R + TS F+G
Sbjct: 304 MDGKGD---GELEKQSVQMH--SDVQQISKGDENQQSIKRNSPLTRDRIAKHKQTSTFIG 358
Query: 368 GAASWDPYSRGVDSDFLKAS-LASRGTLTPKKKQQDPTGERKPNESKP-EESPGDVIPTT 425
G ++WDPYS+GV LK S L T+ ++D ++P ES + T+
Sbjct: 359 GPSNWDPYSKGVTLRSLKISDLPDPPTMVKASSRED---------AQPMTESSNAEVNTS 409
Query: 426 SAMDVSETGVHK-GGEKTLKDAV 447
SA+ E+ H+ G K+LKDA+
Sbjct: 410 SAVAAGESESHEIGSPKSLKDAI 432
>gi|18399822|ref|NP_566441.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|79313209|ref|NP_001030684.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|334185300|ref|NP_001189874.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|15795131|dbj|BAB02509.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|27765042|gb|AAO23642.1| At3g12990 [Arabidopsis thaliana]
gi|110742714|dbj|BAE99268.1| hypothetical protein [Arabidopsis thaliana]
gi|332641750|gb|AEE75271.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641751|gb|AEE75272.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641752|gb|AEE75273.1| ribonuclease PH45A [Arabidopsis thaliana]
Length = 307
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/294 (74%), Positives = 258/294 (87%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RL N WRLTVNE +F+E+AL S +R+DGR ++YRKL+IKFG+E GSS+VQLGQTH+
Sbjct: 1 MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M FVT QLVQPY+DRP+EG+ SIFTEFSPMADPSFE G P ESAVELGRI+DR LRESRA
Sbjct: 61 MAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCVLAGKLVW++RIDLHILDNGGNLVDAAN+AALA+L+TFRRP+C++GG++ +V
Sbjct: 121 VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
I+HPPEEREPLPLIIHHLPIA TFGFF+ S+LV+DPT+ EEAVM G+MT T+NANGD+C
Sbjct: 181 IIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT 294
AIQKPG EGV QSVI+ CLRLAS AS TK I+DAVE YN ER+ +K+KRH T
Sbjct: 241 AIQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVEAYNRERSSQKVKRHHT 294
>gi|21536581|gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
Length = 307
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/294 (73%), Positives = 258/294 (87%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M+ RL N WRLTVNE +F+E+AL S +R+DGR ++YRKL+IKFG+E GSS+VQLGQTH+
Sbjct: 1 MEGRLNNMWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M FVT QLVQPY+DRP+EG+ SIFTEFSPMADPSFE G P ESAVELGRI+DR LRESRA
Sbjct: 61 MAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCVLAGKLVW++RIDLHILDNGGNLVDAAN+AALA+L+TFRRP+C++GG++ +V
Sbjct: 121 VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDV 180
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
I+HPPEEREPLPLIIHHLPIA TFGFF+ S+LV+DPT+ EEAVM G+MT T+NANGD+C
Sbjct: 181 IIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT 294
AIQKPG EGV QSVI+ CLRLAS AS TK I+DAVE YN ER+ +K++RH T
Sbjct: 241 AIQKPGEEGVNQSVILHCLRLASSRASATTKIIRDAVEAYNRERSSQKVERHHT 294
>gi|293335353|ref|NP_001170333.1| uncharacterized protein LOC100384304 [Zea mays]
gi|224030955|gb|ACN34553.1| unknown [Zea mays]
gi|224035157|gb|ACN36654.1| unknown [Zea mays]
gi|413937197|gb|AFW71748.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 393
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/352 (62%), Positives = 277/352 (78%), Gaps = 9/352 (2%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL 68
WR TVNE+ FIE AL S +R+DGR+ F++RKL I FGREDGSSEVQLG+TH+MG+VT QL
Sbjct: 6 WRPTVNERDFIECALQSDLRVDGRHSFDFRKLKITFGREDGSSEVQLGETHVMGYVTVQL 65
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
VQPYRDRPNEGTL+IFTEFSPMADPSFE GRP E A+ELGR++DRGLRESRAVD ESLCV
Sbjct: 66 VQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCV 125
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++GG+D +V VH PE R
Sbjct: 126 VAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDPEVR 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+PLPL IHH+PIAVTF +F +++V+DPT+ EEAVM G+MTA +N+NGDVCAIQK GGE
Sbjct: 186 DPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGE 245
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS---------ITLD 299
GV+ SVIMQCLR+AS A+DIT KIK AV++Y TE+AL+K+KR PTS +T+D
Sbjct: 246 GVMSSVIMQCLRIASVKAADITSKIKKAVDSYTTEKALKKVKRLPTSVPQKINVTNVTMD 305
Query: 300 GSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSN 351
G + + + H+ V ++S+ + +S E+A + E +S+
Sbjct: 306 GKGDGELEKQSVQMHSDVQQISKDPPTMVKASSREDAQPMTESSNAEVNTSS 357
>gi|413937194|gb|AFW71745.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 363
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/365 (61%), Positives = 282/365 (77%), Gaps = 8/365 (2%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL 68
WR TVNE+ FIE AL S +R+DGR+ F++RKL I FGREDGSSEVQLG+TH+MG+VT QL
Sbjct: 6 WRPTVNERDFIECALQSDLRVDGRHSFDFRKLKITFGREDGSSEVQLGETHVMGYVTVQL 65
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
VQPYRDRPNEGTL+IFTEFSPMADPSFE GRP E A+ELGR++DRGLRESRAVD ESLCV
Sbjct: 66 VQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCV 125
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++GG+D +V VH PE R
Sbjct: 126 VAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDPEVR 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+PLPL IHH+PIAVTF +F +++V+DPT+ EEAVM G+MTA +N+NGDVCAIQK GGE
Sbjct: 186 DPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGE 245
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKL 308
GV+ SVIMQCLR+AS A+DIT KIK AV++Y TE+AL+K+KR PTS+ +N+
Sbjct: 246 GVMSSVIMQCLRIASVKAADITSKIKKAVDSYTTEKALKKVKRLPTSVP--QKINVTNVT 303
Query: 309 NEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSS-RRDGATSNFVG 367
+ G EL ++ ++ + + S N + ++S R + TS F+G
Sbjct: 304 MDGKGD---GELEKQSVQMH--SDVQQISKGDENQQSIKRNSPLTRDRIAKHKQTSTFIG 358
Query: 368 GAASW 372
G ++W
Sbjct: 359 GPSNW 363
>gi|413937198|gb|AFW71749.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 337
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/323 (66%), Positives = 266/323 (82%), Gaps = 9/323 (2%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL 68
WR TVNE+ FIE AL S +R+DGR+ F++RKL I FGREDGSSEVQLG+TH+MG+VT QL
Sbjct: 6 WRPTVNERDFIECALQSDLRVDGRHSFDFRKLKITFGREDGSSEVQLGETHVMGYVTVQL 65
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
VQPYRDRPNEGTL+IFTEFSPMADPSFE GRP E A+ELGR++DRGLRESRAVD ESLCV
Sbjct: 66 VQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPGELAIELGRVIDRGLRESRAVDMESLCV 125
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++GG+D +V VH PE R
Sbjct: 126 VAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVTVHDPEVR 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+PLPL IHH+PIAVTF +F +++V+DPT+ EEAVM G+MTA +N+NGDVCAIQK GGE
Sbjct: 186 DPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGE 245
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS---------ITLD 299
GV+ SVIMQCLR+AS A+DIT KIK AV++Y TE+AL+K+KR PTS +T+D
Sbjct: 246 GVMSSVIMQCLRIASVKAADITSKIKKAVDSYTTEKALKKVKRLPTSVPQKINVTNVTMD 305
Query: 300 GSVNLKEKLNEPSGHNVVNELSR 322
G + + + H+ V ++S+
Sbjct: 306 GKGDGELEKQSVQMHSDVQQISK 328
>gi|357149446|ref|XP_003575115.1| PREDICTED: exosome complex component RRP45-like isoform 2
[Brachypodium distachyon]
Length = 394
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/296 (69%), Positives = 251/296 (84%), Gaps = 4/296 (1%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
MD R WR TVNE+ FIE AL S +R+DGR PF++RKL I FGREDGS+EV+LG+T +
Sbjct: 2 MDQR----WRPTVNEREFIEQALQSDLRVDGRRPFDFRKLKIVFGREDGSAEVELGETRV 57
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MG+VT QLVQPY+DRP+EGTL+IFTEFSPMADP+FE GRP E+A+ELGR++DRGLRESRA
Sbjct: 58 MGYVTAQLVQPYKDRPSEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRA 117
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VD ESLCV+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++GGED +V
Sbjct: 118 VDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQV 177
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
VH PE R+PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM G+MTAT+N+NGDVC
Sbjct: 178 TVHDPEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVC 237
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSI 296
+IQK GGEGV+ SVIMQCLR+AS A+DIT KIK VE Y T +AL+K+KR P +
Sbjct: 238 SIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKSKVEDYTTTKALQKVKRTPALV 293
>gi|357149443|ref|XP_003575114.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Brachypodium distachyon]
Length = 336
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/296 (69%), Positives = 251/296 (84%), Gaps = 4/296 (1%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
MD R WR TVNE+ FIE AL S +R+DGR PF++RKL I FGREDGS+EV+LG+T +
Sbjct: 2 MDQR----WRPTVNEREFIEQALQSDLRVDGRRPFDFRKLKIVFGREDGSAEVELGETRV 57
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MG+VT QLVQPY+DRP+EGTL+IFTEFSPMADP+FE GRP E+A+ELGR++DRGLRESRA
Sbjct: 58 MGYVTAQLVQPYKDRPSEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRA 117
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VD ESLCV+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++GGED +V
Sbjct: 118 VDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQV 177
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
VH PE R+PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM G+MTAT+N+NGDVC
Sbjct: 178 TVHDPEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVC 237
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSI 296
+IQK GGEGV+ SVIMQCLR+AS A+DIT KIK VE Y T +AL+K+KR P +
Sbjct: 238 SIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKSKVEDYTTTKALQKVKRTPALV 293
>gi|115446633|ref|NP_001047096.1| Os02g0550700 [Oryza sativa Japonica Group]
gi|50725756|dbj|BAD33267.1| putative polymyositis/scleroderma autoantigen 1 [Oryza sativa
Japonica Group]
gi|113536627|dbj|BAF09010.1| Os02g0550700 [Oryza sativa Japonica Group]
Length = 395
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/287 (71%), Positives = 246/287 (85%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL 68
W TVNE+ FIE AL S +R+DGR PF++R+L I FGREDGS+EVQLG T +MG+ T QL
Sbjct: 7 WHPTVNEREFIERALQSDLRVDGRRPFDFRRLKILFGREDGSAEVQLGDTRVMGYATAQL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
VQPY+DRPNEGTL+IFTEFSPMADP+FE GRP ESA+ELGR+VDRGLRESRAVD ESLCV
Sbjct: 67 VQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVVDRGLRESRAVDMESLCV 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++GGED +V VH PE R
Sbjct: 127 VAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVR 186
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM G+MTAT+N+NGDVC+IQK GGE
Sbjct: 187 DPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSNGDVCSIQKAGGE 246
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
GV+ SVIMQCLR+AS A+DIT KIK+ V +Y + +AL+K+KR P S
Sbjct: 247 GVMSSVIMQCLRIASVKAADITSKIKNEVNSYTSAKALQKVKRLPAS 293
>gi|326493068|dbj|BAJ84995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 337
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/323 (64%), Positives = 259/323 (80%), Gaps = 6/323 (1%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
MD R WR TVNE+ FIE AL S +R+DGR PF++RKL I FGREDGS+EV+LG+T +
Sbjct: 2 MDPR----WRPTVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRV 57
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MG+VT QLVQPY+DRPNEGTL+IFTEFSPMADP+FE GRP E+A+ELGR++DRGLRESRA
Sbjct: 58 MGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRA 117
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VD ESLCV+AGK VW++R+DLHILDN GNL+DAANIAALA+L TFRRPEC++GG+D +V
Sbjct: 118 VDMESLCVVAGKHVWSVRVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQV 177
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
VH E R+PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM G+MTAT+N+NGDVC
Sbjct: 178 TVHDSEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVC 237
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
AIQK GGEGV+ SVIMQCLR+AS +DI KIK V+ Y TE+AL+K+KR P +
Sbjct: 238 AIQKAGGEGVMSSVIMQCLRIASVKVADIPSKIKREVDDYTTEKALQKVKRTPALVA--K 295
Query: 301 SVNLKEKLNEPSGHNVVNELSRK 323
VN+ + + S H+ + + K
Sbjct: 296 KVNVPDITMKESTHSALENQASK 318
>gi|125539848|gb|EAY86243.1| hypothetical protein OsI_07612 [Oryza sativa Indica Group]
Length = 408
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/300 (68%), Positives = 246/300 (82%), Gaps = 13/300 (4%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL 68
W TVNE+ FIE AL S +R+DGR PF++R+L I FGREDGS+EVQLG T +MG+ T QL
Sbjct: 7 WHPTVNEREFIERALQSDLRVDGRRPFDFRRLKILFGREDGSAEVQLGDTRVMGYATAQL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
VQPY+DRPNEGTL+IFTEFSPMADP+FE GRP ESA+ELGR+VDRGLRESRAVD ESLCV
Sbjct: 67 VQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVVDRGLRESRAVDMESLCV 126
Query: 129 LAGKLVWAIRIDLHILDNGG-------------NLVDAANIAALASLLTFRRPECSLGGE 175
+AGK VW++R+DLHILDNGG NL+DAANIAALA+L TFRRPEC++GGE
Sbjct: 127 VAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAANIAALAALSTFRRPECTVGGE 186
Query: 176 DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA 235
D +V VH PE R+PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM G+MTAT+N+
Sbjct: 187 DGQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINS 246
Query: 236 NGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
NGDVC+IQK GGEGV+ SVIMQCLR+AS A+DIT KIK+ V +Y + +AL+K+KR P S
Sbjct: 247 NGDVCSIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKNEVNSYTSAKALQKVKRLPAS 306
>gi|297829840|ref|XP_002882802.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
gi|297328642|gb|EFH59061.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
Length = 294
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/294 (70%), Positives = 241/294 (81%), Gaps = 13/294 (4%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
MD RL+N WR+TVNE +F+E+AL S +R+DGR ++YRKL+IKFG+E GSSEVQLGQTH+
Sbjct: 1 MDGRLSNKWRVTVNESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M FVT QLVQPY+DRPNEG+ SIFTEFSPMADPSFE P ESAVELGRI+DR LRESR
Sbjct: 61 MAFVTAQLVQPYKDRPNEGSFSIFTEFSPMADPSFEPVHPGESAVELGRIIDRALRESRV 120
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VDTESLCV AGKLVW NLVDAANIAALA+LLTFRRP+C++GGE+ EV
Sbjct: 121 VDTESLCVFAGKLVW-------------NLVDAANIAALAALLTFRRPDCTVGGENSQEV 167
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
I+HPPEEREPLPLIIHHLPIA TFGFF+ S+LV+DPT EEAVM G+MT T+NANGD+C
Sbjct: 168 IIHPPEEREPLPLIIHHLPIAFTFGFFNKGSILVMDPTVVEEAVMSGRMTVTVNANGDIC 227
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT 294
AIQKPG EGV QSVI+ CLRLAS A+ TK I++AVE YN ER+ +K+ RH T
Sbjct: 228 AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREAVEAYNRERSSQKVIRHHT 281
>gi|326498189|dbj|BAJ94957.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/270 (71%), Positives = 232/270 (85%), Gaps = 4/270 (1%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
MD R WR TVNE+ FIE AL S +R+DGR PF++RKL I FGREDGS+EV+LG+T +
Sbjct: 2 MDPR----WRPTVNEREFIEQALQSDLRVDGRRPFDFRKLKIAFGREDGSAEVELGETRV 57
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
MG+VT QLVQPY+DRPNEGTL+IFTEFSPMADP+FE GRP E+A+ELGR++DRGLRESRA
Sbjct: 58 MGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEAAIELGRVIDRGLRESRA 117
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VD ESLCV+AGK VW++R+DLHILDN GNL+DAANIAALA+L TFRRPEC++GG+D +V
Sbjct: 118 VDMESLCVVAGKHVWSVRVDLHILDNEGNLIDAANIAALAALSTFRRPECTVGGDDGQQV 177
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
VH E R+PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM G+MTAT+N+NGDVC
Sbjct: 178 TVHDSEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINSNGDVC 237
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDIT 270
AIQK GGEGV+ SVIMQCLR+AS A+DIT
Sbjct: 238 AIQKAGGEGVMSSVIMQCLRIASVKAADIT 267
>gi|222623035|gb|EEE57167.1| hypothetical protein OsJ_07096 [Oryza sativa Japonica Group]
Length = 417
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/309 (62%), Positives = 236/309 (76%), Gaps = 22/309 (7%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---------REDGSSEVQLGQTH 59
W TVNE+ FIE AL S +R+DGR PF++R+L I FG + T
Sbjct: 7 WHPTVNEREFIERALQSDLRVDGRRPFDFRRLKILFGSSWSVCVLVQGGRLGGGAARDTR 66
Query: 60 IMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR 119
+MG+ T QLVQPY+DRPN+GTL+IFTEFSP+ADP+FE GRP ESA+ELGR+VDRGLRESR
Sbjct: 67 VMGYATAQLVQPYKDRPNQGTLAIFTEFSPIADPAFEPGRPGESAIELGRVVDRGLRESR 126
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGG-------------NLVDAANIAALASLLTFR 166
AVD ESLCV+AGK VW++R+DLHILDNGG NL+DAANIAALA+L TFR
Sbjct: 127 AVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAANIAALAALSTFR 186
Query: 167 RPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMV 226
RPEC++GGED +V VH PE R+PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM
Sbjct: 187 RPECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMG 246
Query: 227 GKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
G+MTAT+N+NGDVC+IQK GGEGV+ SVIMQCLR+AS A+DIT KIK+ V +Y + +AL
Sbjct: 247 GRMTATINSNGDVCSIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKNEVNSYTSAKAL 306
Query: 287 RKIKRHPTS 295
+K+KR P S
Sbjct: 307 QKVKRLPAS 315
>gi|302757249|ref|XP_002962048.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
gi|302775248|ref|XP_002971041.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300161023|gb|EFJ27639.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300170707|gb|EFJ37308.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
Length = 377
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 174/288 (60%), Positives = 226/288 (78%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A + R+++NE+ F+E+AL +R+DGR PF+ R+ I F REDG+ EVQ G+T ++ V
Sbjct: 1 MAGSVRISINEREFVESALRQELRVDGRAPFDSRRSLINFAREDGAVEVQQGETRVLAVV 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ QL PY DRPNEG+L I TEFSPMADPSFE GRP E AVELGR++DRGLRESRAVDTE
Sbjct: 61 SAQLGTPYPDRPNEGSLVINTEFSPMADPSFEPGRPGELAVELGRVIDRGLRESRAVDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLCVLAGK VW +RID+HILDNGGNL+D AN+AALA LL+FRRPECS+GG D ++ +HP
Sbjct: 121 SLCVLAGKAVWFLRIDIHILDNGGNLIDVANLAALAGLLSFRRPECSIGGADGQDITIHP 180
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
PE REPLPL +HHLPIAVTFGF + L+V+DP+ EEAVM G++T T+NA+G+VCAIQK
Sbjct: 181 PEVREPLPLTLHHLPIAVTFGFLADGELVVLDPSLKEEAVMGGRLTVTVNAHGEVCAIQK 240
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRH 292
GG V + I++C+R+A+ A++ +K E++ ERA RK++RH
Sbjct: 241 GGGVAVRMNEILRCMRIAASKAAETAALLKKGAESHEIERAQRKVRRH 288
>gi|168031159|ref|XP_001768089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680727|gb|EDQ67161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/268 (63%), Positives = 216/268 (80%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLV 69
R++ NEK FI A+ RIDGR PF+YR+L IKF +EDGS EVQLGQT ++ V G++
Sbjct: 7 RMSTNEKEFIVAAIREEQRIDGRTPFDYRRLQIKFLKEDGSVEVQLGQTRVLAVVKGEIT 66
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
QPY DR NEG+L+IFTEFSPM DP+FE GRPSE AVELGRI+DRGLRESRAVDTESLC+L
Sbjct: 67 QPYPDRGNEGSLAIFTEFSPMGDPAFEPGRPSEMAVELGRIIDRGLRESRAVDTESLCIL 126
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
+G+ VW+IR+D+HILDN GNLVDAAN+AALA+LL++RRPEC++GG+D ++IVHPPE RE
Sbjct: 127 SGRSVWSIRVDIHILDNYGNLVDAANLAALAALLSYRRPECTVGGDDGQQIIVHPPEVRE 186
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
P+ LIIHHLPIAVTF FF + V+DP EE VM G++T T+N+ G++CA+QK GG G
Sbjct: 187 PVGLIIHHLPIAVTFAFFGDGNFQVLDPNLKEEEVMGGRITITINSQGEICAVQKGGGVG 246
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAV 277
V S +M+CLR+A+ A +T+ +K AV
Sbjct: 247 VSASEVMRCLRIAAAKAQSMTETLKKAV 274
>gi|159490978|ref|XP_001703450.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158280374|gb|EDP06132.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 296
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/285 (47%), Positives = 187/285 (65%), Gaps = 2/285 (0%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M R A+++ ++ NE+ FI AL+ +R+DGR P + RK +F +D S V G T +
Sbjct: 1 MSQRDADSF-ISKNEREFILKALAEDVRLDGRRPNDMRKPKFQFSLDDRSCTVAQGSTRV 59
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M V+ L PY DRP+EG L EFSPMA P+FE G+P E A+++ R+++RGLR+S A
Sbjct: 60 MAVVSAALEAPYPDRPSEGPLRFNVEFSPMASPAFEPGKPGEDAIQVARLIERGLRQSGA 119
Query: 121 VDTESLCVLAGKL-VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
VD E+L V AG++ VWA+R+D H+LD+GGNL+D +AALA+L+ FR+PE +GGE E
Sbjct: 120 VDQEALWVGAGRVRVWALRVDCHVLDHGGNLLDCCFLAALAALMAFRKPEVEVGGESGSE 179
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
+IVHPPE REP+PL IHHLP+AVTF F + +LV DPT EEA G T +N +V
Sbjct: 180 IIVHPPEVREPVPLTIHHLPVAVTFALFQAGDMLVADPTWKEEAAAAGSCTVVMNPAQEV 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
C + K G G+ M+C+RLA R A ++ +K A+E + R
Sbjct: 240 CCVHKADGIGLSPEQFMRCVRLAGRQAEEVVAGLKKALEGHEVAR 284
>gi|260806963|ref|XP_002598353.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
gi|229283625|gb|EEN54365.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
Length = 444
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 187/268 (69%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ E+ FI A+ RIDGR ++YR+L + FG E G V LG T ++ V+G++ +
Sbjct: 6 MSTCEREFILKAIRDRKRIDGRQTYDYRRLKVSFGMERGCCIVDLGDTKVLAQVSGKIEE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P ++RP EG++ I E SPMA P+FE GRP+ES +E+ RI++R +R+SRAVDTESLC++A
Sbjct: 66 PKKNRPTEGSIIINLELSPMASPAFEPGRPTESGIEMNRILERNIRDSRAVDTESLCIVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW+IR D+H+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV VH PE+R+P
Sbjct: 126 GEKVWSIRADVHVLNDEGNIMDAASIAAITALSHFRRPDVSVMGE---EVTVHSPEDRDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL +HH+P+ VTF FF L++DP EE VM G+M +N + ++C + GG +
Sbjct: 183 VPLSVHHMPVCVTFAFFDQGEFLLVDPNRSEERVMDGRMVVGMNMHREICTLMMSGGMLL 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++ +++C ++A+ ++I + I+ A++
Sbjct: 243 VKEQVLRCSQIATVKVAEIIELIQRALD 270
>gi|303279202|ref|XP_003058894.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460054|gb|EEH57349.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 292
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 138/284 (48%), Positives = 198/284 (69%), Gaps = 3/284 (1%)
Query: 11 LTVNEKRFIETAL-SSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLV 69
L +N ++FI AL IRID R PF+ R+++ +FG +DG EV LG+T ++ + +L
Sbjct: 10 LCINNRQFILEALKEEDIRIDLRGPFDAREVAYRFGPKDGVCEVSLGKTRVLAVTSAKLE 69
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P R NEG+++I EFSPMA P+FE GRP E A EL +++R +RE+ AVD ESLCVL
Sbjct: 70 PPGGGRSNEGSVTINVEFSPMASPNFEPGRPGEEASELAVVLERAIRETGAVDVESLCVL 129
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG+ VW IR+D+H+LD GN+ AA++AA ASLL+FRRPE ++ L V VHP + RE
Sbjct: 130 AGRRVWNIRVDVHVLDACGNIAGAASLAANASLLSFRRPEATVDPSTQL-VTVHPADARE 188
Query: 190 PLPLIIHHLPIAVTFGFFSS-ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P+PL +HHLPIAV FGFF+ E LL++DP EEAVM + LNA+G++CA+QK GG
Sbjct: 189 PIPLALHHLPIAVKFGFFAEHEGLLIVDPLVDEEAVMASSLIVVLNAHGELCAVQKGGGV 248
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRH 292
GV + IM+C+R+A +M ++T ++++ + + ER R+++RH
Sbjct: 249 GVPANEIMRCVRIADKMTKELTTQLREEHKKWEGERDKRRVRRH 292
>gi|413943885|gb|AFW76534.1| hypothetical protein ZEAMMB73_585681 [Zea mays]
Length = 280
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/181 (67%), Positives = 149/181 (82%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MAD SFE GRP ES +ELGR++DRGLRESRAVD E LCV+AGK VW++R+DLHILDNGGN
Sbjct: 1 MADLSFEPGRPGESTIELGRVIDRGLRESRAVDMEFLCVVAGKHVWSVRVDLHILDNGGN 60
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
L+DAANI ALA+L TF RPEC++GG+D +V VH PE R+ LPL IHH+PI VTF +F
Sbjct: 61 LIDAANIVALAALSTFWRPECTVGGDDGQQVTVHDPEVRDLLPLTIHHMPIVVTFAYFGE 120
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+++V+DPT+ EEAVM G+MTA +N+NGDVCAIQK GGEG + SV MQCLR+AS A+ I
Sbjct: 121 GNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGEGPVSSVTMQCLRIASVKAAVI 180
Query: 270 T 270
T
Sbjct: 181 T 181
>gi|348521108|ref|XP_003448068.1| PREDICTED: exosome complex component RRP45-like [Oreochromis
niloticus]
Length = 410
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 125/276 (45%), Positives = 183/276 (66%), Gaps = 9/276 (3%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N E+ F+ A+ R+DGR ++YRK+ I FG + G V LGQT +M
Sbjct: 3 DTPLSNC------ERDFLLKAIEEKKRLDGRQTYDYRKIKISFGTDYGCCFVDLGQTRVM 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V+ +LV P +RPNEG + E SPMA P FE GR SE +V+L R ++R LR S+ +
Sbjct: 57 AQVSCELVAPKENRPNEGIMFFNIELSPMASPGFEQGRQSELSVKLNRQLERCLRNSKCI 116
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
DTESLCV++G+ VW IR+D+H L+N GNL+DAA+IAA+ +L FRRP+ S G+ EV
Sbjct: 117 DTESLCVVSGEKVWQIRVDVHTLNNDGNLMDAASIAAITALCHFRRPDVSTQGQ---EVT 173
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
V+ PEER+P+PL I+H+PI+V+F FF + L++DP EE VM G + +N + ++C+
Sbjct: 174 VYSPEERDPIPLSIYHMPISVSFAFFQQGTYLLVDPCEREERVMDGLLVIAMNKHREICS 233
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
IQ GG +L+ +M+C ++A S+IT+ I +A+
Sbjct: 234 IQSSGGIMLLKEQVMRCSKIAGVKVSEITELINEAL 269
>gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299]
gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299]
Length = 291
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 198/284 (69%), Gaps = 3/284 (1%)
Query: 11 LTVNEKRFIETALSSG-IRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLV 69
+++NE+ FI AL +R+DGR PF+ R +S +FG +DG EVQLG T ++ V+ +L
Sbjct: 8 ISLNEREFIVKALQEEELRVDGRGPFDTRPVSYRFGPKDGMCEVQLGDTRVLAVVSAKLE 67
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P R NEGT++I EFSPMA P+FE GRP E A EL +++R +RE+ AVD ESLCVL
Sbjct: 68 PPSGARGNEGTITINVEFSPMASPNFEPGRPGEQAQELALVLERAIRETGAVDVESLCVL 127
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG+ VW +R D+H+LD GN+ AA++AA A+LL+FRRPE ++ + L + VHP + RE
Sbjct: 128 AGRRVWHVRCDVHVLDACGNIAGAASLAADAALLSFRRPEATVSPDTQL-ITVHPADVRE 186
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVI-DPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P+PL +HHLP+A+TFG+F+ + LVI DPT +EE V+ ++ LNA+ ++CA++ G
Sbjct: 187 PVPLALHHLPVAITFGYFAEQDGLVIADPTVNEEMVIGSELVVVLNAHDELCAVRYGGEV 246
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRH 292
V S I +C+R+ASR++ D+TK +K A + ER R+++RH
Sbjct: 247 AVKPSEISRCVRIASRISKDLTKDLKKAHAAWEVERDKRRVRRH 290
>gi|326489127|dbj|BAK01547.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 235
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 133/213 (62%), Positives = 166/213 (77%), Gaps = 2/213 (0%)
Query: 113 RGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL 172
R RESRAVD ESLCV+AGK VW++R+DLHILDNGGNL+DAANIAALA+L TFRRPEC++
Sbjct: 13 RCCRESRAVDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTV 72
Query: 173 GGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTAT 232
GG+D +V VH PE +PLPL IHHLPIAVTF +F +++VIDPT+ EEAVM G+MTAT
Sbjct: 73 GGDDGQQVTVHDPEVMDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTAT 132
Query: 233 LNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRH 292
+N+NGDVCAIQK GGEGV+ SVIMQCLR+AS A+DIT KI V+ Y TE+AL+K+KR
Sbjct: 133 INSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKITTKVDQYTTEKALQKVKRT 192
Query: 293 PTSITLDGSVNLKEKLNEPSGHNVVNELSRKHL 325
P S+ + VN+ + + S H + + K L
Sbjct: 193 PASVAKE--VNVPDVTMKESTHGALENQTSKAL 223
>gi|221128137|ref|XP_002160444.1| PREDICTED: exosome complex component RRP45-like [Hydra
magnipapillata]
Length = 437
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 188/288 (65%), Gaps = 3/288 (1%)
Query: 6 ANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVT 65
A T + T EK F+ ++ SGIR+DGR F+YR +SI+FG + G EVQLG+T ++ +
Sbjct: 3 AATIKHTSCEKDFVLKSIKSGIRLDGRQAFDYRNISIQFGIDYGCCEVQLGETRVLAQTS 62
Query: 66 GQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTES 125
+LV+P RP EG L + + SPMA PSFETGR + +E+ R+++R ++ESR +D ES
Sbjct: 63 CELVKPIGTRPTEGQLHLNVDLSPMASPSFETGRMTSQGLEINRLIERCIKESRCIDVES 122
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP 185
LC++AG+ VW+IR+D+ +L++ GN++D + IA +ASL F+ + ++ G EVI+H
Sbjct: 123 LCLIAGEKVWSIRVDIVVLNDCGNILDCSCIAGIASLAHFKHHDVTVTGT---EVIIHNF 179
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+E++P+PL +HH+PI+ TFGF ++IDP EE+++ GK+ N G+VC Q
Sbjct: 180 KEKDPIPLNVHHMPISTTFGFIDDGEQMIIDPEEKEESILSGKLIMAFNIYGEVCCAQMS 239
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHP 293
GG I+QC +++S +S+IT IK A++ T RA +K+ P
Sbjct: 240 GGVSFDYEQILQCAKISSVKSSEITNIIKTALDEDRTSRAPVPLKKRP 287
>gi|327274166|ref|XP_003221849.1| PREDICTED: exosome complex exonuclease RRP45-like [Anolis
carolinensis]
Length = 439
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ EKRF+ A+ R+DGR ++YR L I FG + G V+LG+T I+G V+ +LV
Sbjct: 6 LSNCEKRFLLKAIEERKRLDGRECYDYRNLRISFGSDYGCCIVELGKTRILGQVSCELVT 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E SPMA P+FE GR E V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKPNRATEGILFFNLELSPMASPAFEPGRQPELLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GNL+DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHVLNHNGNLIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTFLLVDPSEQEERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++ ++IT I+ A+E
Sbjct: 243 LKDQVLRCSKITGVKVAEITALIQKALE 270
>gi|410930716|ref|XP_003978744.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 386
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 190/284 (66%), Gaps = 11/284 (3%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N+ E+ F+ A++ R+DGR ++YR++ + FG + G V+LG+T +M
Sbjct: 3 DTPLSNS------ERDFLLKAIAEKKRLDGRQTYDYRRIKVSFGADYGCCFVELGETRVM 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V+ +LV P RPNEG L E SPMA P+FE GR SE +V+L R ++R LR S+ +
Sbjct: 57 AQVSCELVAPKESRPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERCLRNSKCI 116
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
DTESLCV++G+ VW IR+D+H+L++ GNL+DAA+IAA+ +L FRRP+ S GE E+
Sbjct: 117 DTESLCVVSGEKVWQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPDVSSVGE---EIT 173
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
V PEER+P+PL I+H+PI+V+F FF + L++DP EE VM G + +N + ++C+
Sbjct: 174 VFSPEERDPIPLCIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICS 233
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
IQ GG +L+ +M+C ++AS S+I + I A+E N +RA
Sbjct: 234 IQSSGGIMLLKEQVMRCSKIASVKVSEINELISKALE--NDKRA 275
>gi|440792691|gb|ELR13899.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 524
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/269 (45%), Positives = 185/269 (68%), Gaps = 4/269 (1%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLV 69
+L++NE+ F+ +L+ G R+DGR ++YR L I F + G EVQLGQT + V ++V
Sbjct: 12 KLSLNEREFLLASLAEGRRLDGRGLYDYRTLKISFPYQPGYCEVQLGQTRVYVVVRCEVV 71
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETG-RPSESAVELGRIVDRGLRESRAVDTESLCV 128
+PY DRP EG TEFSPMA SFE G R SE AVE+GR+++R LR+SRA+DTE+LC+
Sbjct: 72 EPYADRPTEGFFIFNTEFSPMASASFEVGARVSEEAVEVGRLIERSLRDSRAIDTEALCI 131
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
AG+ VWA++ID+H+LD+GGNL+DAA+IA +++LL FRRP+ S+ G+ + VH +R
Sbjct: 132 RAGEKVWAVQIDVHVLDDGGNLIDAASIATVSALLHFRRPDVSITGD---AITVHSVADR 188
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
EP+PL IHHLP+ VTF F +V+DP EE + G++T N + ++C + K GG
Sbjct: 189 EPVPLSIHHLPLCVTFAVFGDGDQVVVDPWFKEEQSLNGRVTLIHNQHRELCGVHKSGGP 248
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + +++C ++A+ D+ + I+ A+
Sbjct: 249 GLPLNTLVKCSKIAAVKVQDVIQAIQSAI 277
>gi|198401795|gb|ACH87550.1| exosome component 9 [Platynereis dumerilii]
Length = 530
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 187/284 (65%), Gaps = 9/284 (3%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT ++N EK FI A+S +R+DGR ++YR++ I+FG + G +V LG+T +M
Sbjct: 98 DTPMSNC------EKEFILDAISKKMRLDGRGCYDYRRIKIQFGIDRGCCQVHLGKTIVM 151
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
+ ++ P + RP+EG + + E SPMA P FE GR S++ VEL RI++R ++ESR V
Sbjct: 152 AQTSCEVTTPKQTRPSEGNVFVNVELSPMAAPHFEAGRQSDAGVELTRILERCIKESRCV 211
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
DTESLC+++G VW IR+D+H+L++ GNL+DAA+IAA++SL+ FRRP+ S+ GED V
Sbjct: 212 DTESLCIMSGVKVWTIRVDVHVLNHNGNLIDAASIAAISSLVHFRRPDVSVSGED---VT 268
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
+H E+R+P+PL +HH+PI VT F+ + L+IDPT EE VM GK+ +N + ++C
Sbjct: 269 IHSLEDRDPIPLSVHHMPICVTCAFYHKGTYLLIDPTDKEENVMDGKVIVGMNKHREICT 328
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
Q G +L+ +++C +A ++T I+ A++ RA
Sbjct: 329 FQLTGSMLLLKEQVLRCSNMAVVKVGEMTALIEQALQNDTAARA 372
>gi|320163129|gb|EFW40028.1| polymyositis/scleroderma autoantigen 1 [Capsaspora owczarzaki ATCC
30864]
Length = 313
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 194/300 (64%), Gaps = 12/300 (4%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N NE+ F++ A+ SG+R+DGR +++R++ I + E G EVQLG+T +M
Sbjct: 3 DTPLSN------NERSFVQGAMKSGLRVDGRGVYDFRRIRIAYQPERGHVEVQLGRTRVM 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V+ +L +P+ DRP EG + E SPMA P+FE GRPSE A+EL R+V+R +++S A+
Sbjct: 57 VQVSCELTKPFPDRPAEGAVQFNVELSPMASPAFEPGRPSEQAIELSRMVERVVKDSNAI 116
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDD 177
DT SLCV++G+ VW IR+DLH LD+ GNL DA +AALA L+ FR+PE S+ G++
Sbjct: 117 DTTSLCVISGEAVWNIRVDLHALDHDGNLSDALCMAALAGLIHFRKPEVSMPSLSSGDES 176
Query: 178 L--EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA 235
+ +I+H EREPLPL +HH+P+ VTF F +V+DPT EE V G + +N
Sbjct: 177 VAGNLIIHDVREREPLPLSVHHMPLCVTFAFLDDGEHMVVDPTFQEERVAEGYLIVAMNI 236
Query: 236 NGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
+ +VCA+ K G + S I +C ++A+ +++T+ ++ +++ RA R+ + P +
Sbjct: 237 HREVCAVHKHGSVLLDASQISRCTKIAAIKVAEMTELLQKSIDEEEQLRANRRAGKAPAA 296
>gi|47213776|emb|CAF92665.1| unnamed protein product [Tetraodon nigroviridis]
Length = 379
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 190/287 (66%), Gaps = 12/287 (4%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N+ E+ F+ A+ R+DGR ++YR++ + FG + G V+LG+T +M
Sbjct: 3 DTPLSNS------ERNFLLKAIEEKKRLDGRQTYDYRRIRVSFGADYGCCFVELGETRVM 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V+ +LV P RPNEG L E SP+A P+FE GR SE +V L R ++R LR S+ +
Sbjct: 57 AQVSCELVAPKESRPNEGILFFNIELSPLASPAFEAGRQSELSVNLNRQLERCLRNSKCI 116
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
DTESLCV++G+ VW IR+D+H+L++ GNL+DAA+IAA+ +L FRRP+ + GE E+
Sbjct: 117 DTESLCVVSGEKVWQIRVDVHMLNHDGNLMDAASIAAITALCHFRRPDVGIVGE---EIK 173
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
V PEER+P+PL I+H+PI+V+F FF + L++DP EE VM G + +N + ++C+
Sbjct: 174 VFSPEERDPIPLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICS 233
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
IQ GG +L+ +M+C ++AS S+IT+ + A+E ++A RK
Sbjct: 234 IQSSGGIMLLKEQVMRCSKIASVKVSEITELVSKALE---NDKAARK 277
>gi|77797833|ref|NP_001030000.1| exosome complex exonuclease RRP45 [Gallus gallus]
gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen 1 [Gallus gallus]
Length = 440
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/278 (43%), Positives = 185/278 (66%), Gaps = 6/278 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG E G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIQERKRLDGRQCYDYRNVRISFGPEHGCCVVELGKTRVLGQVSCELVP 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E SPMA P FE GR SE V++ R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN+VDAA+IA + +L FRRP+ S+ G+ EV V+ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQGK---EVTVYSPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
L+ +++C ++ + ++IT+ I+ A+E ++ LRK
Sbjct: 243 LKDQVLRCSKITAVKVAEITELIQKALE---NDQKLRK 277
>gi|432843370|ref|XP_004065602.1| PREDICTED: exosome complex component RRP45-like [Oryzias latipes]
Length = 427
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 185/274 (67%), Gaps = 3/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+ FI A+ R+DGR ++YRK+ I FG + G V LGQT +M V+ +LV
Sbjct: 6 LSACERDFILKAIEEKKRLDGRQTYDYRKIKISFGTDYGCCFVDLGQTRVMAQVSCELVA 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG + E SP+A P+FE GR SE +V+L R ++R LR S+ +DTESLCV++
Sbjct: 66 PKESRPNEGIMFFNIELSPLASPAFEQGRQSELSVKLNRQLERCLRNSKCIDTESLCVVS 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+D+H+L+N GNL+DA++IAA+A+L FRRP+ ++ GE EV V+ PEER+P
Sbjct: 126 GEKVWQIRVDVHMLNNDGNLMDASSIAAIAALCHFRRPDVAVQGE---EVTVYSPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I+H+PI+V+F FF + L++DP EE VM G + +N + ++C+IQ GG +
Sbjct: 183 IPLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
L+ +M+C ++AS S+IT+ I A+ T R
Sbjct: 243 LKEQVMRCSKIASVKVSEITELISKALMNDKTAR 276
>gi|149411987|ref|XP_001513016.1| PREDICTED: exosome complex component RRP45-like [Ornithorhynchus
anatinus]
Length = 439
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/278 (43%), Positives = 187/278 (67%), Gaps = 6/278 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQIYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVA 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ VDTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERCLRNSKCVDTESLCVIA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ E+ ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHVLNHDGNILDAASIAAIVALCHFRRPDVSVQGD---EITLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G M +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPIYVSFAFFLQGAYLLVDPSEREERVMDGLMVIAMNKHREICTIQSSGGVML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
L+ +++C ++A ++IT+ I+ A+E +R +RK
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE---NDRKVRK 277
>gi|296195656|ref|XP_002745482.1| PREDICTED: exosome complex component RRP45 [Callithrix jacchus]
Length = 440
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVA 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA++AA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASVAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|351703822|gb|EHB06741.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 462
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVA 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+D+H+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDIHLLNHDGNIIDAASIAAVVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VALSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|281207355|gb|EFA81538.1| Putative exosome complex exonuclease [Polysphondylium pallidum
PN500]
Length = 470
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 109/267 (40%), Positives = 184/267 (68%), Gaps = 4/267 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ NEK FI +++ G+R+DGR + R + I FG++ G EVQLG+T + VT ++ +
Sbjct: 5 LSKNEKDFILSSIDQGLRVDGRRLNDMRSIKINFGKQYGMVEVQLGRTRVYTTVTCEVTE 64
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +RPNEG T+ SPM+ S ++ R + ELGR+++RGL+ESRA+DTE+LC++A
Sbjct: 65 PKPERPNEGFFIFNTDVSPMSSVSVDSSRGNPVEAELGRLIERGLKESRAIDTEALCIVA 124
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G VW ++ ++H+LD+ GNL+D A+I+ + +LL FR+P+ ++ G D +HP +EREP
Sbjct: 125 GSKVWKVKTNVHVLDDCGNLLDCASISVITALLHFRKPDVTVVGND---ATIHPIDEREP 181
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH PI++TFGFF ++++++DP + EE VM GK++ +N + ++C + K GG
Sbjct: 182 VPLSIHHTPISITFGFF-PKAIMIVDPDNKEEQVMDGKLSFYVNVHKEICGVSKGGGMST 240
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
+++C +++ A++IT+ I++A+
Sbjct: 241 TIEQVIKCSKISVIRATEITQLIREAL 267
>gi|328866220|gb|EGG14605.1| Putative exosome complex exonuclease RRP45 [Dictyostelium
fasciculatum]
Length = 469
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 197/298 (66%), Gaps = 6/298 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ NEK F+ +++ G+RIDGR + R + I FG+E G EVQLG+T + V+ ++ +
Sbjct: 5 LSKNEKEFMLSSIQQGLRIDGRRLDDMRDVKISFGKEYGMVEVQLGRTRVYTSVSCEVAE 64
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +RPNEG T S M++ + GR + + +ELGR+V+RGL+ESRA+DTE+LC++A
Sbjct: 65 PRPERPNEGFFVFNTNISQMSNVEVDIGRSNPAELELGRLVERGLKESRAIDTEALCIVA 124
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW I ++HILD+ GNL+D A+I+ + +LL FR+P+ +L G E +H EEREP
Sbjct: 125 GQKVWRIVTNIHILDDCGNLLDCASISVITALLHFRKPDVTLVGN---EATIHTLEEREP 181
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH P++VTFGFF +SL+++DP EE V+ GK++ +N + ++C + K GG
Sbjct: 182 VPLSIHHYPVSVTFGFF-PDSLMIVDPDAKEEMVIDGKLSFLVNVHKEICGVSKSGGMST 240
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV-ETYNTERALRKIKRHPTSITLDGSVNLKEK 307
+++C ++A A DIT KI+ A+ E+ + + K ++ P + ++ +V +KE+
Sbjct: 241 SIDQVIKCSKMAINRAFDITNKIRIALHESIKDKNSSMKTRKKPMEM-VEYTVPIKEE 297
>gi|384250786|gb|EIE24265.1| exoribonuclease PH component of the exosome [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 165/255 (64%), Gaps = 4/255 (1%)
Query: 42 IKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS 101
++F +D + + +GQT +M +T L PY DRPNEG + E+SPMA PSF+ GRP
Sbjct: 4 VQFSLDDSGATLDMGQTKVMTVITPTLTAPYEDRPNEGAVRFNVEYSPMASPSFQAGRPG 63
Query: 102 ESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALAS 161
E+A+E+ R+++R R+SRA+D E+LCVLAG VW++ ID+H+LDNGGNL DA + LA+
Sbjct: 64 EAAIEVTRLLERAFRDSRAIDQEALCVLAGHRVWSLSIDVHVLDNGGNLADACMLCTLAA 123
Query: 162 LLTFRRP--ECSLGGEDD--LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDP 217
L+ FRRP E + GG + V V P REP+PL +HHLP+ ++F FF LLV+DP
Sbjct: 124 LMAFRRPDTEVAAGGAESGRARVTVLSPSAREPVPLSLHHLPLGISFAFFEDGELLVVDP 183
Query: 218 THHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
EEA G MT +N + DVC ++K G G+ + + + +RLA+ A + +K A+
Sbjct: 184 DSTEEAAAAGLMTVVVNTHSDVCTVRKTSGIGISMTQVHRVVRLANSRAGQVMDGLKAAL 243
Query: 278 ETYNTERALRKIKRH 292
+ ++T R +++RH
Sbjct: 244 QRHDTSRVAARVRRH 258
>gi|330804424|ref|XP_003290195.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
gi|325079706|gb|EGC33294.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
Length = 303
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 185/267 (69%), Gaps = 4/267 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NEK FI +++ RIDGR+ + R + I+FG+ G EVQLG+T + +T +V+
Sbjct: 5 ISKNEKDFILSSIDKYTRIDGRSITDMRSIKIEFGKSFGLVEVQLGKTRVYTSITCDIVE 64
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +RPNEG T+ SPM+ S + R + ELGRI+++GL+ESRA+DTESLC+++
Sbjct: 65 PKPERPNEGFYVFNTDISPMSSVSVDPNRGNPLENELGRIIEKGLKESRAIDTESLCIIS 124
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G VW+I+I +HILD+ GNL+D A+I+ +A+LL FR+P+ ++ G E +HP +EREP
Sbjct: 125 GSKVWSIKISIHILDDCGNLLDCASISVIAALLHFRKPDVTVIGN---EATIHPIDEREP 181
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH PI++TFGFF +E ++++DP + EE+VM GK++ +N + ++C + K GG
Sbjct: 182 VPLSIHHTPISITFGFFPNE-IMIVDPDNKEESVMDGKLSFLVNIHKEICGVSKGGGTST 240
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
+++C ++A A++IT +IK+++
Sbjct: 241 SVHQVLKCSKIAVIKAAEITLQIKESI 267
>gi|19075183|ref|NP_587683.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe 972h-]
gi|21759396|sp|O74918.1|RRP45_SCHPO RecName: Full=Exosome complex component rrp45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|3702641|emb|CAA21233.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe]
Length = 291
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 173/267 (64%), Gaps = 3/267 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++N K F+ +L G+R+DGR ++R L I+FG+E G +V G T +M +T ++ +P
Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G SI TE +P+A +FE GR S+ + + R++++ +R S A+DTESLC+++G
Sbjct: 68 YTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W +R +H +++ GNLVDAA IA +A+L FRRPE ++ GE EV VHP EER P+
Sbjct: 128 QKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGE---EVTVHPVEERVPV 184
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL I H+PI VTF FF++ L ++D T EE + G MT TLN N +VC I K GG +
Sbjct: 185 PLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQIYKAGGIIID 244
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVE 278
S I+ C + A +A + I+ A++
Sbjct: 245 PSKIISCAKTAFDIAVSVCSVIQQALD 271
>gi|225708190|gb|ACO09941.1| Exosome complex exonuclease RRP45 [Osmerus mordax]
Length = 398
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 178/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E++F+ A+ R+DGR ++YR + I FG + G V LG+T +M V+ +LV
Sbjct: 6 LSNCERQFLLKAIEEKKRLDGRQIYDYRTIKISFGTDYGCCFVDLGKTRVMTQVSCELVV 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +RP++G + E SPMA P FE GR SE V+L R ++R LR S+ DTESLCV++
Sbjct: 66 PKDNRPSDGIMFFNVELSPMASPGFEVGRQSELLVKLNRQLERCLRNSKCFDTESLCVVS 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+D+H+L++ GNL+DAA++AA+ +L FRRP+ + GE EV V+ EER+P
Sbjct: 126 GEKVWQIRVDVHVLNHDGNLMDAASVAAITALSHFRRPDVGIHGE---EVTVYGSEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I+H+PI V+F FF + L++DP EE VM G + +N + ++C+IQ GG +
Sbjct: 183 IPLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++AS ++IT+ I A+E
Sbjct: 243 LKEQVLRCSKIASVKVTEITELIHKALE 270
>gi|443726519|gb|ELU13639.1| hypothetical protein CAPTEDRAFT_176766 [Capitella teleta]
Length = 340
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 179/272 (65%), Gaps = 4/272 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI A+ R+DGR ++YRK+ + FG + G +++LG + +M V+ ++ P +
Sbjct: 10 ERDFIIQAIEQRSRLDGRGVYDYRKMQLTFGEDRGCCQMELGNSIVMTQVSCEVTPPKQT 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETG-RPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
RP+EG L + E SPMA P+FE G R S+ VEL R+++R L+ESR VDTESLC++AG
Sbjct: 70 RPSEGILFVNVELSPMASPTFEPGGRMSDFGVELNRLLERCLKESRCVDTESLCIMAGLK 129
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW IR+D H+L+ GNLVD + +A+A+L FRRP+ S+ GE EV +H +ER+P+PL
Sbjct: 130 VWTIRVDCHVLNYDGNLVDCCSASAIAALAHFRRPDVSVSGE---EVTIHTLDERDPIPL 186
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
IHH+P+ VTF FFS L++DP+ EE VM GKM +N + ++C +Q G +++
Sbjct: 187 SIHHMPLCVTFAFFSQGKYLLVDPSLKEEKVMDGKMVIGMNKHREICTLQMSGNMLIMKD 246
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTERA 285
+++C +A ++IT+ I+ +++ + R+
Sbjct: 247 QVLRCSNIAVVKVTEITELIQKSLQADSLARS 278
>gi|387015828|gb|AFJ50033.1| Exosome complex exonuclease RRP45-like [Crotalus adamanteus]
Length = 434
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 122/268 (45%), Positives = 182/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ EKRF+ A+ R+DGR ++YR L I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCEKRFLLRAIEERKRLDGRQCYDYRNLRISFGVDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E SPMA P+FE GR SE V+L R+++R LR S+ VDTESLCV+A
Sbjct: 66 PKPNRATEGILFFNLELSPMASPAFEPGRQSELLVKLNRLLERCLRNSKCVDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHNGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPSEQEERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++ ++IT+ I+ A+E
Sbjct: 243 LKEQVLRCSKITGVKVAEITELIQKALE 270
>gi|66824935|ref|XP_645822.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
gi|60473944|gb|EAL71882.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
Length = 526
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 200/314 (63%), Gaps = 6/314 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NEK F+ +++ RIDGR + R + I+FG+ G EVQLG+T + +T +V+
Sbjct: 5 ISKNEKDFVLSSIEKLQRIDGRGVNDMRAIKIEFGKSYGVVEVQLGKTRVFTAITCDIVE 64
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +RPNEG T+ SPM+ S +P+ ELGRI+++GL++SRA+DTE+LC+++
Sbjct: 65 PKPERPNEGFYIFNTDISPMSSVSVNVNQPNPMESELGRIIEKGLKDSRAIDTEALCIIS 124
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G VW+I+I +H+LD+ GNL+D A+I+ + +L+ FR+P+ ++ G D +H +EREP
Sbjct: 125 GSKVWSIKIAIHVLDDCGNLLDCASISVMTALIHFRKPDVTVIGND---ATIHSLDEREP 181
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH PI++TFGFF +E ++++DP EE+VM GK++ +N + ++C + K GG
Sbjct: 182 VPLSIHHTPISITFGFFPNE-IMIVDPDTKEESVMDGKLSFFVNIHKEICGVSKGGGTST 240
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKL-- 308
+++C ++A A++IT +I++++ R+ + KR+ + + V E +
Sbjct: 241 TIDQVLKCSKIAVIKAAEITLQIRESIHENLKLRSSSQNKRNGSGLNTASKVKSLEMIEH 300
Query: 309 NEPSGHNVVNELSR 322
P + ++NE+ +
Sbjct: 301 TRPIENQIINEIKK 314
>gi|291229746|ref|XP_002734834.1| PREDICTED: exosome component 9-like [Saccoglossus kowalevskii]
Length = 421
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 175/271 (64%), Gaps = 3/271 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
EK FI T + + R+DGR +++R I FG++ G EVQLG T ++ V+ ++++P ++
Sbjct: 40 EKDFILTCIKNRRRVDGRQAYDFRNAKISFGQDLGHCEVQLGDTRVLCQVSCEIIEPRQN 99
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP EG L E SPMA P FE GR SE +E+ R +++ +R+SRA+DTESLC++AG+ V
Sbjct: 100 RPTEGGLYFNVELSPMASPLFEPGRQSEFGIEIIRFLEKTVRDSRAIDTESLCIVAGEKV 159
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W IRID+H+L++ GN++D +AA+ +L FRRP+ S+ GED V VH +R+P+ L
Sbjct: 160 WEIRIDIHVLNHDGNIMDCVTMAAVTALSHFRRPDVSVVGED---VQVHSAADRDPVSLS 216
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+HHLP++VTF +F L++DPT EE VM G M ++N + ++C G +++
Sbjct: 217 VHHLPVSVTFAYFDEGKYLLVDPTEREECVMDGSMILSMNIHRELCTAHMSGDMLLVKDQ 276
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERA 285
I++C + A S++T IK A+E RA
Sbjct: 277 IIRCTQTAIVKVSELTDLIKKALENDRKARA 307
>gi|390333942|ref|XP_788833.3| PREDICTED: exosome complex component RRP45-like [Strongylocentrotus
purpuratus]
Length = 479
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/271 (42%), Positives = 181/271 (66%), Gaps = 3/271 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI A+ R+DGR P++YR+ I+FG E G V +G T I+ V+ ++V+P +
Sbjct: 8 EEDFILKAIEESKRLDGRQPYDYRRTKIEFGVERGCCMVHMGDTRILAQVSCEVVEPKEN 67
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L + E SPMA +FE GR S+ +EL R+++R +++SRAVD ESLC++AG+ V
Sbjct: 68 RPNEGQLFVNLELSPMASTTFEAGRLSDYGIELNRLLERTVKDSRAVDVESLCIVAGEKV 127
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W IR+D+H+L++ GN++D+A +AALA+L FRRP+ ++ GE V +H P++R+P+PL
Sbjct: 128 WKIRLDVHVLNHDGNILDSACLAALAALSHFRRPDVTVIGES---VTIHSPQDRDPVPLN 184
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+HH+P+ VTF F+ L++DPT EE VM G M +N + ++C +Q G +L+
Sbjct: 185 VHHIPVCVTFAFYHKGKRLLVDPTEKEEKVMEGTMVVGMNVHRELCTMQVTGSMLILKEQ 244
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERA 285
I++C ++ S++T+ IK A+E RA
Sbjct: 245 IIRCCQIGVVKVSELTELIKLALEKDKIARA 275
>gi|354496605|ref|XP_003510416.1| PREDICTED: exosome complex component RRP45-like [Cricetulus
griseus]
Length = 437
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI ++F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITDLIQKALE 270
>gi|70794772|ref|NP_001020577.1| exosome complex component RRP45 [Rattus norvegicus]
gi|81918190|sp|Q4QR75.1|EXOS9_RAT RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|67678411|gb|AAH97413.1| Exosome component 9 [Rattus norvegicus]
gi|149048739|gb|EDM01280.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
gi|149048740|gb|EDM01281.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
Length = 437
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ + +C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVFRCSKIAGVKVAEITELIQKALE 270
>gi|71724847|gb|AAZ38885.1| 3' exoribonuclease [Xenopus laevis]
Length = 431
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 178/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+ F+ A++ R+DGR ++YR + I FG + G V+LG+T ++ V+ ++V
Sbjct: 6 LSNCERNFLLQAITEKKRLDGRQTYDYRNIKIAFGTDYGCCIVELGKTRVLCQVSCEIVT 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP EG L E SPMA P FE GR SE +V+L R+++R LR S+ +DTESLCV A
Sbjct: 66 PKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERCLRNSKCIDTESLCVAA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+A L FRRP+ S+ GE EV V+ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGE---EVTVYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKEQVLRCSKVAGVKVGEITELIQKALE 270
>gi|147898885|ref|NP_001085439.1| exosome component 9 [Xenopus laevis]
gi|49114791|gb|AAH72749.1| SCL75 protein [Xenopus laevis]
Length = 431
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 178/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+ F+ A++ R+DGR ++YR + I FG + G V+LG+T ++ V+ ++V
Sbjct: 6 LSNCERNFLLQAITEKKRLDGRQTYDYRNIKIAFGTDYGCCIVELGKTRVLCQVSCEIVT 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP EG L E SPMA P FE GR SE +V+L R+++R LR S+ +DTESLCV A
Sbjct: 66 PKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERCLRNSKCIDTESLCVAA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+A L FRRP+ S+ GE EV V+ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGE---EVTVYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKEQVLRCSKVAGVKVGEITELIQKALE 270
>gi|328767537|gb|EGF77586.1| hypothetical protein BATDEDRAFT_91577 [Batrachochytrium
dendrobatidis JAM81]
Length = 276
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/267 (41%), Positives = 172/267 (64%), Gaps = 3/267 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ NE+ F+ A+ SGIR DGR R + I G + G ++VQLG+T IM V+ ++V+
Sbjct: 8 LSTNEREFVVKAIQSGIRTDGRTSNTIRNIKITLGPQLGFAQVQLGKTRIMSTVSCEIVR 67
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P P++G + TEFSPMA P+FE SE+ + + R++++ LR +R VDTE LC++A
Sbjct: 68 PSSGNPSDGVIHFNTEFSPMASPAFEVDSTSENEILISRMLEKALRRARVVDTEGLCIVA 127
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VWAIR+D+ +L++ GN++D A IAA+ SLL F+RP+ ++ GED V +H EE+ P
Sbjct: 128 GEKVWAIRVDIRVLNHEGNILDCACIAAMCSLLHFKRPDVTVIGED---VTIHTLEEKNP 184
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L IHH+PI VTF FF VIDP+ EE G MT +N + ++C + K GG +
Sbjct: 185 IGLNIHHIPICVTFAFFHQGEYQVIDPSLLEEQAQDGDMTIVVNIHRELCTLSKAGGTPI 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
++ C +A+ ++DIT+ I+ A+
Sbjct: 245 SPEQVIHCANVAAIKSADITQLIRQAI 271
>gi|187957240|gb|AAI58076.1| Exosc9 protein [Mus musculus]
Length = 438
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ + +C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVFRCSKIAGVKVAEITELIQKALE 270
>gi|148703131|gb|EDL35078.1| exosome component 9, isoform CRA_a [Mus musculus]
gi|148703133|gb|EDL35080.1| exosome component 9, isoform CRA_a [Mus musculus]
Length = 437
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ + +C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVFRCSKIAGVKVAEITELIQKALE 270
>gi|9506981|ref|NP_062266.1| exosome complex component RRP45 [Mus musculus]
gi|14285679|sp|Q9JHI7.1|EXOS9_MOUSE RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|8132103|gb|AAF73218.1|AF152841_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 a [Mus
musculus]
gi|8132105|gb|AAF73219.1|AF152842_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 b [Mus
musculus]
gi|13542847|gb|AAH05622.1| Exosome component 9 [Mus musculus]
gi|30354433|gb|AAH52156.1| Exosome component 9 [Mus musculus]
Length = 438
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ + +C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVFRCSKIAGVKVAEITELIQKALE 270
>gi|156383487|ref|XP_001632865.1| predicted protein [Nematostella vectensis]
gi|156219927|gb|EDO40802.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 171/269 (63%), Gaps = 9/269 (3%)
Query: 28 RIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEF 87
R+DGR ++YRKL I F E G EVQLG+T ++ V+ ++ +P +R +G + I E
Sbjct: 1 RLDGRGIYDYRKLRIAFSVERGHCEVQLGKTRVLAQVSCEITKPKTNRQTDGHIYINVEL 60
Query: 88 SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG 147
SPMA P+FE GR SE VEL R V+R ESRA+DTESLC++AG+ VW++R+D+ +LD+
Sbjct: 61 SPMASPAFEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVLDHS 120
Query: 148 GNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF 207
GN++D A I+A+ +L FRRP+ S+ GE EV +H +R+P+PL I H+PI VTF FF
Sbjct: 121 GNILDCACISAITALSHFRRPDVSVSGE---EVTIHSEADRDPVPLSILHMPICVTFAFF 177
Query: 208 SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
+ LL++DP EEAVM G M LN + +VC GG + I++C +A +
Sbjct: 178 DNGELLLVDPNDKEEAVMDGHMMMALNIHREVCGAVMGGGVSLETDQIIRCSNIAVVKVA 237
Query: 268 DITKKIKDAVETYNTER------ALRKIK 290
+IT+ I+ A+ +R LRKI+
Sbjct: 238 EITELIEKALAVDAKQRFVTNNNMLRKIQ 266
>gi|149698257|ref|XP_001503169.1| PREDICTED: exosome complex component RRP45-like [Equus caballus]
Length = 440
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCVVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVLAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKEQVLRCSKIAGVKVAEITELIQKALE 270
>gi|332244450|ref|XP_003271387.1| PREDICTED: exosome complex component RRP45 isoform 1 [Nomascus
leucogenys]
Length = 439
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ SL FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|332244454|ref|XP_003271389.1| PREDICTED: exosome complex component RRP45 isoform 3 [Nomascus
leucogenys]
Length = 392
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ SL FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|332244452|ref|XP_003271388.1| PREDICTED: exosome complex component RRP45 isoform 2 [Nomascus
leucogenys]
Length = 456
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ SL FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|444721920|gb|ELW62627.1| Exosome complex component RRP45 [Tupaia chinensis]
Length = 438
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNVKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|431899671|gb|ELK07625.1| Exosome complex exonuclease RRP45 [Pteropus alecto]
Length = 440
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|344277527|ref|XP_003410552.1| PREDICTED: exosome complex component RRP45 [Loxodonta africana]
Length = 439
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|344245223|gb|EGW01327.1| Exosome complex exonuclease RRP45 [Cricetulus griseus]
Length = 386
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI ++F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITDLIQKALE 270
>gi|417400960|gb|JAA47389.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp45
[Desmodus rotundus]
Length = 440
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRSIKISFGTDYGCCVVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVIA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL +HH+PI V+F FF + L++DP+ EE VM G + +N + ++C +Q GG +
Sbjct: 183 VPLSVHHMPICVSFAFFQQGTFLLVDPSEREERVMDGLLVIAMNKHREICTLQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L +++C ++A ++IT+ I+ A+E
Sbjct: 243 LNEQVLRCSKIAGVKVTEITELIQKALE 270
>gi|291401826|ref|XP_002717277.1| PREDICTED: exosome component 9 [Oryctolagus cuniculus]
Length = 440
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVA 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFCNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCMDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF L++DPT EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGMYLLVDPTEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|297674264|ref|XP_002815152.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pongo abelii]
gi|297674266|ref|XP_002815153.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pongo abelii]
Length = 439
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|403290342|ref|XP_003936279.1| PREDICTED: exosome complex component RRP45 [Saimiri boliviensis
boliviensis]
Length = 440
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 181/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVA 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|12847890|dbj|BAB27749.1| unnamed protein product [Mus musculus]
Length = 395
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ + +C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVFRCSKIAGVKVAEITELIQKALE 270
>gi|187607878|ref|NP_001120226.1| exosome component 9 [Xenopus (Silurana) tropicalis]
gi|169642591|gb|AAI60389.1| LOC100145275 protein [Xenopus (Silurana) tropicalis]
Length = 406
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+ F+ A++ R+DGR ++YR + I FG + G V+LG+T ++ V+ ++V
Sbjct: 6 LSNCERAFLLQAIAERKRLDGRQTYDYRNIKITFGTDYGCCIVELGKTRVLCQVSSEIVT 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +RP EG L SPMA P FE GR SE +V+L R+++R LR S+ +DTESLCV A
Sbjct: 66 PKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+A L FRRP+ S+ GE EV V+ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGE---EVTVYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF L++DP+ EE VM G + ++N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGLLVISMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKEQVLRCSKVAGVKVGEITELIQKALE 270
>gi|296423319|ref|XP_002841202.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637437|emb|CAZ85393.1| unnamed protein product [Tuber melanosporum]
Length = 293
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/276 (41%), Positives = 174/276 (63%), Gaps = 3/276 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
T+NEK FI AL+ +RIDGR+ +R+L + FG + G ++VQLG+T ++ V+ ++V+P
Sbjct: 8 TINEKSFILDALNQKLRIDGRDLDSFRELELNFGDDYGLADVQLGKTRVLARVSAEVVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G +I TE PMA P+FE GR +E V L R++++ +R S A+DTESLC++AG
Sbjct: 68 FTDRPFDGIFTITTELGPMASPAFEPGRQTEQEVLLSRLIEKAIRRSNALDTESLCIVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W IR D+H L + G LVDA+ IA +A+L FRRP+ S+ GE +V +H ER P+
Sbjct: 128 QKCWQIRADVHFLSHDGALVDASCIAVVAALQHFRRPDVSVEGE---KVTIHTMTERIPV 184
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL I H+PI VTF F+ + ++D T EE + G MT TLN G++C I K GG +
Sbjct: 185 PLSILHVPICVTFSFYLDGEVCLVDATLQEEQLRQGDMTITLNKFGELCQIAKAGGLAIN 244
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVETYNTERALR 287
+++C ++A +I ++ +E R R
Sbjct: 245 GLNLLRCAKIALVKVGEIAATVQRRLEEDAAARVRR 280
>gi|297674268|ref|XP_002815154.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pongo abelii]
gi|297674270|ref|XP_002815155.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pongo abelii]
Length = 456
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|297674272|ref|XP_002815156.1| PREDICTED: exosome complex component RRP45 isoform 5 [Pongo abelii]
Length = 392
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|281343292|gb|EFB18876.1| hypothetical protein PANDA_013099 [Ailuropoda melanoleuca]
Length = 456
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVLEITELIQKALE 270
>gi|301776905|ref|XP_002923870.1| PREDICTED: exosome complex exonuclease RRP45-like [Ailuropoda
melanoleuca]
Length = 440
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVLEITELIQKALE 270
>gi|73983962|ref|XP_533302.2| PREDICTED: exosome complex component RRP45 isoform 1 [Canis lupus
familiaris]
Length = 440
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVLEITELIQKALE 270
>gi|410956922|ref|XP_003985085.1| PREDICTED: exosome complex component RRP45 [Felis catus]
Length = 445
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKITFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVLEITELIQKALE 270
>gi|355686813|gb|AER98195.1| exosome component 9 [Mustela putorius furo]
Length = 394
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 185/278 (66%), Gaps = 6/278 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
L+ +++C ++A +IT+ I+ A+E +R +RK
Sbjct: 243 LKDQVLRCSKIAGVKVLEITELIQKALE---NDRKVRK 277
>gi|402870359|ref|XP_003899194.1| PREDICTED: exosome complex component RRP45 isoform 1 [Papio anubis]
gi|380813850|gb|AFE78799.1| exosome complex component RRP45 isoform 2 [Macaca mulatta]
Length = 439
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|345569202|gb|EGX52070.1| hypothetical protein AOL_s00043g460 [Arthrobotrys oligospora ATCC
24927]
Length = 298
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 166/271 (61%), Gaps = 7/271 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++ EK F+ AL +R+DGRN +R + FG + G +V+LG+T ++ ++ ++++
Sbjct: 7 ISLAEKTFVLEALKQNLRVDGRNIHSFRDIQFSFGDDYGFVDVRLGKTRVLARISAEIIR 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P DRP EGT +I TE PMA PSFE GRP++ L R++++ +R S A+D ESLC++
Sbjct: 67 PRPDRPFEGTFTISTEMGPMASPSFEVGRPTDLDNTLSRLLEKSIRRSTALDLESLCIVT 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
+ VW++R DLH L + GNL+D A IA + +L FR P ++ GED + +HP ER P
Sbjct: 127 AQRVWSLRADLHFLSHDGNLIDTACIATITALAHFRLPVVTVSGED---ITIHPVTERVP 183
Query: 191 LPLIIHHLPIAVTFGFF----SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+PL + H PI VTF FF E + V+D T EEA+ G MT T+N NG+VC I K G
Sbjct: 184 VPLSLLHWPICVTFSFFGEDDDGEMVCVLDATAQEEALREGDMTVTVNKNGEVCQISKSG 243
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
G V +M+C R A+ I K I A+
Sbjct: 244 GVAVEAETLMKCARKAAEKVKGIDKLIASAL 274
>gi|114595908|ref|XP_001154164.1| PREDICTED: exosome complex component RRP45 isoform 6 [Pan
troglodytes]
gi|410265114|gb|JAA20523.1| exosome component 9 [Pan troglodytes]
gi|410292732|gb|JAA24966.1| exosome component 9 [Pan troglodytes]
Length = 439
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|297293310|ref|XP_001101063.2| PREDICTED: exosome complex exonuclease RRP45 [Macaca mulatta]
Length = 432
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|335293904|ref|XP_003129265.2| PREDICTED: exosome complex component RRP45-like [Sus scrofa]
Length = 440
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVLEITELIQKALE 270
>gi|332820219|ref|XP_001154217.2| PREDICTED: exosome complex component RRP45 isoform 7 [Pan
troglodytes]
Length = 392
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|77812670|ref|NP_005024.2| exosome complex component RRP45 isoform 2 [Homo sapiens]
gi|147744559|sp|Q06265.3|EXOS9_HUMAN RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|28172864|emb|CAD44530.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625653|gb|EAX05248.1| exosome component 9, isoform CRA_b [Homo sapiens]
Length = 439
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|146218577|gb|AAI40040.1| Exosome component 9 [synthetic construct]
gi|146218579|gb|AAI40039.1| Exosome component 9 [synthetic construct]
gi|148745755|gb|AAI42979.1| Exosome component 9 [Homo sapiens]
Length = 439
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGAYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|122920907|pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 358
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 23 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 82
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 83 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 142
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 143 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 199
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 200 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 259
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 260 LKDQVLRCSKIAGVKVAEITELILKALE 287
>gi|402870363|ref|XP_003899196.1| PREDICTED: exosome complex component RRP45 isoform 3 [Papio anubis]
Length = 392
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|114595906|ref|XP_001154031.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pan
troglodytes]
Length = 456
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|395545183|ref|XP_003774484.1| PREDICTED: exosome complex component RRP45 isoform 1 [Sarcophilus
harrisii]
Length = 439
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ E+ ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EITLYALEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI ++F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
LQ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LQDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|194378034|dbj|BAG63380.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|402870361|ref|XP_003899195.1| PREDICTED: exosome complex component RRP45 isoform 2 [Papio anubis]
Length = 456
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|426345379|ref|XP_004040392.1| PREDICTED: exosome complex component RRP45 isoform 1 [Gorilla
gorilla gorilla]
Length = 439
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|77812672|ref|NP_001029366.1| exosome complex component RRP45 isoform 1 [Homo sapiens]
gi|28172868|emb|CAD56889.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625652|gb|EAX05247.1| exosome component 9, isoform CRA_a [Homo sapiens]
Length = 456
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|355687576|gb|EHH26160.1| hypothetical protein EGK_16059 [Macaca mulatta]
gi|355749543|gb|EHH53942.1| hypothetical protein EGM_14660 [Macaca fascicularis]
Length = 456
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|426345381|ref|XP_004040393.1| PREDICTED: exosome complex component RRP45 isoform 2 [Gorilla
gorilla gorilla]
Length = 456
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|395545185|ref|XP_003774485.1| PREDICTED: exosome complex component RRP45 isoform 2 [Sarcophilus
harrisii]
Length = 453
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ E+ ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EITLYALEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI ++F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
LQ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LQDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|54400656|ref|NP_001006077.1| exosome complex exonuclease RRP45 [Danio rerio]
gi|53734430|gb|AAH83243.1| Exosome component 9 [Danio rerio]
gi|182889156|gb|AAI64713.1| Exosc9 protein [Danio rerio]
Length = 393
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/277 (43%), Positives = 179/277 (64%), Gaps = 9/277 (3%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N RL F+ A+ R+DGR ++YR + I FG + G V+LG+T ++
Sbjct: 3 DTPLSNCERL------FLLKAIKEKKRLDGRQTYDYRNIKISFGTDYGCCVVELGKTRVL 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V+ +LV P RP EG + E SPMA P+FE R SE V L R ++R LR S+ +
Sbjct: 57 SQVSCELVPPKDSRPTEGIVFFNLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCI 116
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
DTESLCV++G+ VW IR+D+H+L++ GNL+DAA+IAA+++L FRRP+ ++ G D V
Sbjct: 117 DTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRD---VT 173
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
V PEER+P+PL I+H+PI V+F FF S L++DP EE V G + +N + ++C+
Sbjct: 174 VFGPEERDPIPLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICS 233
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
IQ GG +L+ +++C ++AS S+IT+ I A+E
Sbjct: 234 IQSSGGIMLLKEQVLRCSKIASVKVSEITELINKALE 270
>gi|426345383|ref|XP_004040394.1| PREDICTED: exosome complex component RRP45 isoform 3 [Gorilla
gorilla gorilla]
Length = 392
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|348582824|ref|XP_003477176.1| PREDICTED: exosome complex component RRP45-like [Cavia porcellus]
Length = 439
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 179/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVA 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ + GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVCVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VALSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|397490985|ref|XP_003816461.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pan paniscus]
Length = 439
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 179/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+ ++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|397490989|ref|XP_003816463.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pan paniscus]
Length = 392
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 179/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+ ++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|397490987|ref|XP_003816462.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pan paniscus]
Length = 456
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 179/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+ ++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>gi|296486842|tpg|DAA28955.1| TPA: exosome complex exonuclease RRP45 [Bos taurus]
Length = 440
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVVEITELIQKALE 270
>gi|395845692|ref|XP_003795559.1| PREDICTED: exosome complex component RRP45 [Otolemur garnettii]
Length = 439
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALSHFRRPDVSVQGD---EVTLYTHEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELIQKALE 270
>gi|78045505|ref|NP_001030225.1| exosome complex component RRP45 [Bos taurus]
gi|122140086|sp|Q3SWZ4.1|EXOS9_BOVIN RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|74356309|gb|AAI04588.1| Exosome component 9 [Bos taurus]
Length = 440
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVVEITELIQKALE 270
>gi|392572304|gb|EIW65456.1| hypothetical protein TREMEDRAFT_70580 [Tremella mesenterica DSM
1558]
Length = 281
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 180/277 (64%), Gaps = 9/277 (3%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
++ F+ ALS G R+DGR P E R++ ++FG E G + +LG+T ++ VT +V+P D
Sbjct: 11 QRDFVLKALSEGKRLDGRLPLEMREIELEFGAELGCCQCRLGKTAVLAQVTATIVKPRDD 70
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP EG+L I +E SPMA ++E GR SE + + R++++ +R + AVD E+LC++AG V
Sbjct: 71 RPYEGSLLINSEISPMASTAYENGRSSEDELIITRMLEKSIRRTEAVDREALCIIAGDKV 130
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+ LH L + GNL+D A++A++A+L FR+PE + G+ EVI+H PEER P+PL
Sbjct: 131 WQLRLTLHFLSDSGNLLDCASLASMAALRHFRKPEIEVIGD---EVIIHSPEERAPVPLS 187
Query: 195 IHHLPIAVTFGFFSSESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+HH+P+ VTF +F E+L ++DPTH EE + G ++ TLNA ++C + K GG + +
Sbjct: 188 MHHVPLCVTFAYF--ENLPPILDPTHLEECLCTGTLSITLNAQREICVLSKAGGSALAAN 245
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
+M +R+ + + A+E +R++R I+
Sbjct: 246 EMMGVIRVGVDQVRQMVATVDKALE---KDRSIRVIE 279
>gi|440908962|gb|ELR58930.1| Exosome complex exonuclease RRP45 [Bos grunniens mutus]
Length = 446
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVVEITELIQKALE 270
>gi|426231206|ref|XP_004009631.1| PREDICTED: exosome complex component RRP45 [Ovis aries]
Length = 440
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVVEITELIQKALE 270
>gi|126330624|ref|XP_001362799.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Monodelphis domestica]
Length = 438
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 179/268 (66%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ E+ ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EITLYALEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI ++F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
LQ +++C ++A ++IT+ I A+E
Sbjct: 243 LQDQVLRCSKIAGVKVAEITELILKALE 270
>gi|351710102|gb|EHB13021.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 364
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 167/264 (63%), Gaps = 4/264 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E RF+ A+ ++DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +
Sbjct: 10 EHRFLLCAIEEKKQLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVAPKLN 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG L E S MA P+FE GR S+ V+L R+++R LR + DTESLC +AG+ V
Sbjct: 70 RATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNLKCTDTESLCAVAGEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W IR+D+H+L++ GN+ DAA+I A+ + FRRP+ S+ G EV ++ PEE +P+ L
Sbjct: 130 WQIRVDIHLLNHDGNITDAASIDAIVASCHFRRPDVSVQG----EVTLYTPEEHDPVALS 185
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +L+
Sbjct: 186 IHHMPICVSFAFFQQGTYLLVDPNEREECVMDGLLVIAMNKHREICTIQYSGGIMLLKDQ 245
Query: 255 IMQCLRLASRMASDITKKIKDAVE 278
+++C ++ ++IT+ I+ +E
Sbjct: 246 VLRCSKITGVKVAEITELIQKTLE 269
>gi|402086889|gb|EJT81787.1| exosome complex exonuclease RRP45 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 302
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 167/274 (60%), Gaps = 13/274 (4%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK F+ AL +R+DGR +YR + + FG E G +V+LG+T I+ + ++ P
Sbjct: 8 SLNEKAFVLQALQQNLRLDGREVDQYRPIKLTFGDEYGVVDVELGKTRILAKTSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPMA P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YADRPFDGIFNIVTELSPMASPAFEVNRPTEAEVLLSRLLEKTVRRSGALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
W++R+DLH+L + GNLVDA+ +A + +L FR+P+ S+ GE + V+ P EREP+
Sbjct: 128 LKCWSVRVDLHVLSHDGNLVDASCLAVVTALRHFRKPDTSIEGE---ALTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSES----------LLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
PL H P VTF FF S L +D EE V VG T +LN +G++C
Sbjct: 185 PLSWLHSPFCVTFSFFGEASQSAGGDEAGDLFAVDANWLEEQVRVGHCTISLNRHGEICQ 244
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKD 275
I K GG V ++QC +A A + +K + D
Sbjct: 245 ISKLGGAAVDAVALLQCNAIALTKAKEFSKLVDD 278
>gi|389632461|ref|XP_003713883.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
gi|351646216|gb|EHA54076.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
Length = 293
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 166/265 (62%), Gaps = 4/265 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK F+ AL +R+DGR+ EYR + + FG E G EV+ G+T I+ + ++ P
Sbjct: 8 SLNEKAFLLQALQQNLRLDGRDIDEYRPIKLSFGDEYGLVEVEFGKTRIVAKASAEVTIP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPMA P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YTDRPFDGIFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKTIRRSNALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W+IR+D+H + GNL+DA+ +A +A+L FR+P+ S+ GE V V+ P EREP+
Sbjct: 128 QKCWSIRVDVHAESHDGNLIDASCLAVVAALRHFRKPDTSIEGE---VVTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VTF FF + V+D EE V V T +LN +G++C I K GG V
Sbjct: 185 PLSWLHSPFCVTFSFFGDLGDMFVVDANWLEEQVRVSSCTISLNRHGEICQIAKLGGTAV 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKD 275
++QC +A A D +K + D
Sbjct: 245 EAVTLLQCNAVALVKAKDFSKLLDD 269
>gi|326918964|ref|XP_003205754.1| PREDICTED: exosome complex exonuclease RRP45-like, partial
[Meleagris gallopavo]
Length = 403
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 160/235 (68%), Gaps = 3/235 (1%)
Query: 44 FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES 103
FG E G V+LG+T ++G V+ +LV P +R EG L E SPMA P FE GR SE
Sbjct: 2 FGPEYGCCVVELGKTRVLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSEL 61
Query: 104 AVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL 163
V++ R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IA + +L
Sbjct: 62 LVKVNRLIERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAGIVALC 121
Query: 164 TFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEA 223
FRRP+ S+ G+ EV V+ PEER+P+PL IHH+PI V+F FF + L++DP EE
Sbjct: 122 HFRRPDVSVQGK---EVTVYSPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREER 178
Query: 224 VMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
VM G + +N + ++C IQ GG +L+ +++C ++ + ++IT+ I+ A+E
Sbjct: 179 VMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKITAVKVAEITELIQKALE 233
>gi|452823313|gb|EME30324.1| exosome complex component RRP45 [Galdieria sulphuraria]
Length = 389
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 216/373 (57%), Gaps = 27/373 (7%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ EK F AL +GIR+DGR E R ++ +FG + G+ V+LG+T + ++V+
Sbjct: 6 LSLLEKNFALEALQAGIRVDGRKIDEARLVNFEFGSQYGTVTVRLGKTKVFSSAIAEVVE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSF-----ETGRPS---ESAVELGRIVDRGLRESRAVD 122
P DRP EG ++ + SPMA + +GR S E A E+ R + + +RE++A+D
Sbjct: 66 PTIDRPAEGFVTFSVDLSPMASENLMLEYLYSGRTSSTLEEAAEIVRFLQQIIRENQAID 125
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV 182
TE+LC++AG VWAIR+D+H+LD+ GN++DA +AA+ASLL R+P ++ G+D V +
Sbjct: 126 TETLCIVAGVQVWAIRVDIHVLDHCGNVLDACCMAAVASLLHMRKPVVTVVGKD---VFI 182
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
H +EREP+PL +HHLPI+V+FG F L+ IDP+ EE+VM G ++ +NA+ ++CA
Sbjct: 183 HGIDEREPVPLTVHHLPISVSFGIFLDGDLIAIDPSIQEESVMEGTLSIAVNAHKEICAF 242
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKI---------KRHP 293
+K GG + S+I + A A+++T +++ A++ + A+ + K P
Sbjct: 243 RKAGGASIETSLIFKNASYAYLRATEVTVQLEKALKDTYSRNAVASVKPLQVETTKKSFP 302
Query: 294 TSITLDGSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSP---GNNGEGESKSS 350
+ + G + +++ + S E K +++P + S NA ++ E +KS
Sbjct: 303 LNEQVQGVTTVWKQVAKQSAL----EDKEKTVDQPNITSVTNAEMEIFIDDSEESYTKSD 358
Query: 351 NFGRSSRRDGATS 363
S+ D T+
Sbjct: 359 ELSASTDSDEETA 371
>gi|432097876|gb|ELK27905.1| Exosome complex component RRP45 [Myotis davidii]
Length = 423
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 172/251 (68%), Gaps = 3/251 (1%)
Query: 28 RIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEF 87
R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E
Sbjct: 6 RLDGRQTYDYRSIRISFGADYGCCVVELGKTRVLGQVSCELVSPKLNRATEGILFFNLEL 65
Query: 88 SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG 147
S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++
Sbjct: 66 SQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHD 125
Query: 148 GNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF 207
GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P+PL IHH+PI V+F FF
Sbjct: 126 GNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDPVPLSIHHMPICVSFAFF 182
Query: 208 SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
+ L++DP+ EE VM G + +N + ++C IQ GG +L +++C ++A +
Sbjct: 183 QQGTFLLVDPSEREERVMDGLLVIAVNKHREICTIQSSGGIMLLNEQVLRCSKIAGVKVA 242
Query: 268 DITKKIKDAVE 278
+IT+ I+ A+E
Sbjct: 243 EITELIQKALE 253
>gi|403170373|ref|XP_003329715.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168691|gb|EFP85296.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 176/282 (62%), Gaps = 6/282 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ E+ F+ AL G RID R E R +S+ F + S + LG T + V+ + +P
Sbjct: 8 SIVEREFLLQALKEGTRIDQRALLEQRPVSLSFAEDGHSVDCSLGNTRVAAHVSASITKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP EG I +E +PMA+ ++TGR SE+ +++ R++D+ L S +D E+LC+LAG
Sbjct: 68 WADRPFEGLFQISSEINPMANFIYDTGRSSENEIQISRMLDKSLSRSGVIDKEALCILAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
++VW+IR+DLH L++ GNL+D A+IAA+A+L TF+RP+ +L GE E+ +H +ER P+
Sbjct: 128 QMVWSIRLDLHFLNDEGNLLDCASIAAIAALQTFQRPDVTLVGE---EITIHSIQERVPV 184
Query: 192 PLIIHHLPIAVTFGFF---SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
PL +HH PI++T+GFF S +S +V+DP + EE + G +T LN ++C + K GG
Sbjct: 185 PLTLHHTPISLTYGFFELDSHKSSVVLDPNYLEEQLSTGTITLALNPQKEICVVNKSGGV 244
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
+ IM ++L S+ + + IK + N+ L ++
Sbjct: 245 PLSIEEIMNVVKLGSQKVKQLDQLIKSLISNRNSPVDLTAVQ 286
>gi|347442048|emb|CCD34969.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Botryotinia fuckeliana]
Length = 294
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 169/264 (64%), Gaps = 5/264 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK+F AL +RIDGR+ ++R L ++FG E G ++V+LG+T ++ +T ++ P
Sbjct: 8 SINEKQFFSKALKENLRIDGRSFDQFRALELEFGDEYGVADVRLGKTRVLVNITAEVTSP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DR +G +I TE SPMA P+FET RP+E V L R++++ LR S A+DTESLC++AG
Sbjct: 68 FPDRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKTLRRSAALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R D+HIL + GNL+DA+ IA +A+L FR+P+ S GE V V+ EREP+
Sbjct: 128 QKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPDTSTEGET---VTVYTLAEREPV 184
Query: 192 PLIIHHLPIAVTFGFF--SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
PL + H P+ VTF F+ E ++D T EE + G T ++N +G+VC I K GG
Sbjct: 185 PLSLLHFPLCVTFSFYGKGQEQTRLVDTTLTEEQLREGSCTISMNRHGEVCQIAKLGGIA 244
Query: 250 VLQSVIMQCLRLASRMASDITKKI 273
V ++QC +A DI+ I
Sbjct: 245 VDAVELLQCTNIALEKVKDISAYI 268
>gi|290990431|ref|XP_002677840.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
gi|284091449|gb|EFC45096.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
Length = 367
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 183/292 (62%), Gaps = 21/292 (7%)
Query: 23 LSSGIRIDGRNPFEYRKL-------SIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
L S +RIDGR+ ++YR + S + G +V LG T +G V+ +++PY DR
Sbjct: 54 LPSILRIDGRDLYDYRSIEFSLPTSSQELAVPSGQVQVTLGNTIALGIVSCSIMEPYMDR 113
Query: 76 PNEGTLSIFTEFSPMADPSF---ETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
PNEG L+ +FS + +T + E +E+GR++DR LR SR++DTE+LC++AG+
Sbjct: 114 PNEGFLTFQIDFSTVGSRPIGTKQTSQQRELCIEIGRVIDRSLRGSRSIDTEALCIIAGR 173
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW++R+D+HIL + GN+ D ++AA+A+LL F+RPE ++ G+ V+VH ++R+P+P
Sbjct: 174 KVWSLRVDVHILQDDGNVFDCCHLAAVAALLHFKRPEVTIEGD---RVVVHTVQDRQPVP 230
Query: 193 LIIHHLPIAVTFGFFSSES--LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L +HH+PI +F FF +S L V+DP EE + G MT LNA+ ++CAIQK GG +
Sbjct: 231 LSVHHIPICTSFSFFDHDSATLFVVDPCKKEEMIAEGFMTIALNAHKELCAIQKGGGLAL 290
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALR------KIKRHPTSI 296
+ I++C ++ S + +IT+ +K ++ ++R + K + +PT +
Sbjct: 291 TKDQILECAQIGSVKSKEITETLKQFLQAEESKRIQQGKLQYVKYEENPTKV 342
>gi|407917787|gb|EKG11090.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 292
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/268 (41%), Positives = 175/268 (65%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++NE+ FI AL +R+DGR +R L + FG E G ++V+LG+T ++ ++ +
Sbjct: 7 LSLNEREFILQALGENVRLDGRAFDTFRDLELTFGNEYGVADVRLGKTRVLVRISSDVTA 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DR +G +I TEFSPMA P+FE GR +E+ V L RI+++ +R S A+DTESLC++A
Sbjct: 67 PFADRKFDGIFNISTEFSPMASPAFEVGRQTEAEVILSRILEKAIRRSGALDTESLCIVA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +++R D++ILD+ GNL+DA+ IA +A+L FRRP+ ++ GE +V V P EREP
Sbjct: 127 GSKCFSVRADVNILDHDGNLIDASCIAIIAALQHFRRPDIAVEGE---KVTVFSPREREP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL + H P+ VTF ++++ ++++D T EE V G++ T+N G++C I K GG V
Sbjct: 184 VPLSMLHHPLCVTFSYYNNGEIILVDATAAEEQVREGEVIITMNKFGEICQIAKYGGTPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
I+QC +A +TK I+ +E
Sbjct: 244 DPLAILQCNNVALSKVQTLTKYIQGKLE 271
>gi|171685834|ref|XP_001907858.1| hypothetical protein [Podospora anserina S mat+]
gi|170942878|emb|CAP68531.1| unnamed protein product [Podospora anserina S mat+]
Length = 297
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 168/263 (63%), Gaps = 4/263 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK+F+ AL +R+DGR +YR L + FG + G ++V LG+T ++ + +L P
Sbjct: 8 SLNEKQFVLQALHDSVRLDGRELEQYRPLELTFGDQYGVADVTLGKTRVLAKASAELTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPM P+FE RP+E+ V + R++++ +R S A+DTESLC++AG
Sbjct: 68 YADRPLDGIFNIATELSPMTSPAFEVNRPTETEVLISRLLEKTVRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W+IR+D+H+L + GNL+DAA A +A+L FR+P+ S+ G + V+ P EREP+
Sbjct: 128 QKCWSIRVDVHVLSHDGNLIDAACFAVVAALRHFRKPDTSMEGG---VLTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VT+ FF E + V+D T EE V G T +LN +G++C I K GG V
Sbjct: 185 PLSWLHSPFCVTWSFFGEEGDVAVLDATWMEEQVRSGSCTISLNKHGEICQIAKLGGVPV 244
Query: 251 LQSVIMQCLRLASRMASDITKKI 273
++QC +A A D++ K+
Sbjct: 245 EAVSLLQCTNVALVKAKDMSSKL 267
>gi|119625657|gb|EAX05252.1| exosome component 9, isoform CRA_f [Homo sapiens]
Length = 423
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 171/251 (68%), Gaps = 3/251 (1%)
Query: 28 RIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEF 87
R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E
Sbjct: 7 RLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLEL 66
Query: 88 SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG 147
S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++
Sbjct: 67 SQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHD 126
Query: 148 GNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF 207
GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P+PL IHH+PI V+F FF
Sbjct: 127 GNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDPVPLSIHHMPICVSFAFF 183
Query: 208 SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
+ L++DP EE VM G + +N + ++C IQ GG +L+ +++C ++A +
Sbjct: 184 QQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVA 243
Query: 268 DITKKIKDAVE 278
+IT+ I A+E
Sbjct: 244 EITELILKALE 254
>gi|367050304|ref|XP_003655531.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
gi|347002795|gb|AEO69195.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
Length = 293
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 176/280 (62%), Gaps = 8/280 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK+F+ AL +R+DGR +YR L + FG + G ++V LG+T ++ T ++ P
Sbjct: 8 SLNEKQFVLQALQENLRLDGRELDQYRPLDLSFGDQYGVADVTLGRTRVLAKATAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPM P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YADRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R+D+H+L + GNL+DA+ +A +A+L FR+P+ S+ D + V+ P EREP+
Sbjct: 128 QKCWSVRVDVHVLSHDGNLIDASCLAVVAALRHFRKPDTSM---DAGVLTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSES-LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VT+ FF E+ + V+D T EE V VG T +LN +G++C I K GG V
Sbjct: 185 PLSWLHSPFCVTWSFFGDEADIAVLDATWLEEQVRVGSCTISLNKHGEICQIAKLGGTPV 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
++QC + +A K+ D ++T E R+ K
Sbjct: 245 DAVALLQC----TSVALTKVKEFSDLLDTKLAEDLKRRDK 280
>gi|413953850|gb|AFW86499.1| hypothetical protein ZEAMMB73_626410 [Zea mays]
Length = 448
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 139/169 (82%)
Query: 115 LRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174
+RESRAVD E LCV+AGK VW++ +DLHILD+GGNL+DAANIAALA+L TF RPEC++GG
Sbjct: 14 VRESRAVDMEFLCVVAGKHVWSVHVDLHILDDGGNLIDAANIAALAALSTFWRPECTVGG 73
Query: 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
+D +V VH PE R+PLPL IHH+PIAVTF +F +++V+DPT+ EEAVM G+M A +N
Sbjct: 74 DDGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMAAIVN 133
Query: 235 ANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+NGDVCAIQK GGEG++ SV MQCLR+AS A+DIT KIK AV ++ E
Sbjct: 134 SNGDVCAIQKAGGEGLMSSVTMQCLRIASVKAADITSKIKKAVLIWDVE 182
>gi|169621181|ref|XP_001804001.1| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
gi|160704198|gb|EAT78822.2| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
Length = 292
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 173/268 (64%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++NE+ FI+ AL IR+DGR +RK+ + FG E G ++VQLG+T ++ ++ +
Sbjct: 7 ISINEREFIKQALQEQIRLDGRAFDAFRKVELTFGEEYGVADVQLGKTRVVARISIDVTT 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R +G I TEFSPMA P+FE GRP+++ V L RI+++ +R S A+DTESLC++A
Sbjct: 67 PLPERKFDGVFQIVTEFSPMASPAFEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +A+R D+H++D+ G L+DA+ IA +A+L FRRP+ + GE + V ER+P
Sbjct: 127 GLKCFALRADVHVIDHDGGLIDASCIAVMAALQHFRRPDVLVEGE---KATVLSVRERDP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P+ VTF +F+ L ++D EE V G++T T+N +G++C I K GG V
Sbjct: 184 IPLSILHQPLCVTFSYFAEGELFLVDANLAEEQVRQGEITITMNKHGEICQIAKYGGATV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++QC +A + +++K I+ ++
Sbjct: 244 NPLAMLQCTNVALQKVKEMSKFIQQKLD 271
>gi|387192361|gb|AFJ68652.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
gi|422294192|gb|EKU21492.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
Length = 620
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 30/310 (9%)
Query: 11 LTVNEKRFIETALSS-GIRIDGRNPFEYRKLSIKFGREDG--SSEVQLGQTHIMGFVTGQ 67
+++NE+ FI TAL R DGR P + R+L + + R +G ++E+QLG+T ++ VT +
Sbjct: 10 MSINEREFILTALKDENCRADGRTPADTRELRVTYARAEGQATAEIQLGKTRVLTVVTSE 69
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L PY DRP EG L++ E+SPMA + R + + VE+ R+++R LR+SRA+DTE+LC
Sbjct: 70 LTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERCLRQSRALDTEALC 129
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDD-------- 177
V+AG VW++R D+ ILD+ GN+VDAA +A +A+L+ FR PE ++ GG D+
Sbjct: 130 VIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPEVTVLTGGSDERSNSSAND 189
Query: 178 ----------------LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLL-VIDPTHH 220
V+VH E+EP L IHH+PI VTF F++ ++ VIDPT
Sbjct: 190 GESSVGRVRGGGGLGHASVVVHHSFEKEPSALPIHHVPICVTFVLFNTSPIVSVIDPTER 249
Query: 221 EEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETY 280
EE VM G++T ++N + +VCA+QK GG + + + + +A D ++ ++E
Sbjct: 250 EELVMGGRITFSINVHREVCAMQKIGGLALAPTSLARLAEIAMEKVGDWHSLLQTSLEAA 309
Query: 281 NTERALRKIK 290
+++ +++
Sbjct: 310 DSQAKAERLR 319
>gi|367027518|ref|XP_003663043.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
gi|347010312|gb|AEO57798.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
Length = 293
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/252 (42%), Positives = 162/252 (64%), Gaps = 4/252 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK+F+ AL +R+DGR +YR L + FG + G ++V LG+T ++ T ++ P
Sbjct: 8 SLNEKQFVIQALQENLRLDGRELDQYRPLELTFGDQYGVADVTLGKTRVLAKATAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPM P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YADRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R+D+H+L + GNL DAA A +A+L FR+P+ S+ G + V+ P EREP+
Sbjct: 128 QKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSMEGG---RLTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VT+ FF E + V+D T EE V VG T +LN +G++C I K GG V
Sbjct: 185 PLSWLHSPFCVTWSFFGDEGEIAVLDATWLEEQVRVGSCTVSLNKHGEICQIAKLGGTPV 244
Query: 251 LQSVIMQCLRLA 262
++QC +A
Sbjct: 245 DAVALLQCTSVA 256
>gi|328861810|gb|EGG10912.1| hypothetical protein MELLADRAFT_33545 [Melampsora larici-populina
98AG31]
Length = 286
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 166/267 (62%), Gaps = 4/267 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ E+ F+ AL G+R+DGR FE R +S+ + S E LG+T + V+ + +P
Sbjct: 8 SIPEREFLLDALREGLRLDGRATFEQRPISLLISEDGDSVECSLGRTRVSAHVSATITRP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
DRP EG L + E +P+A +E GR SE V L R++D+ L S +D E+LC+LAG
Sbjct: 68 RPDRPFEGLLQVSAEINPLASFVYEIGRASEDEVHLSRLLDKTLVRSGVIDREALCILAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW IR+DLH L++ GN++D A++AA+A+L FRRP+ +L GE E+ VH +ER P+
Sbjct: 128 QKVWCIRVDLHFLNDEGNMLDCASVAAIAALQNFRRPDITLVGE---EITVHSFDERLPI 184
Query: 192 PLIIHHLPIAVTFGFFS-SESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL +HHLPI +TF FF S +++DP+ E+ + G MT TLNA ++C I K GG
Sbjct: 185 PLTLHHLPICLTFAFFELPASYILLDPSRLEQQLSTGTMTLTLNAQREICVINKSGGMPS 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
IM+ +R+ SR ++ IK+ +
Sbjct: 245 DVEEIMRVVRIGSRRVQEVDALIKEQI 271
>gi|403413602|emb|CCM00302.1| predicted protein [Fibroporia radiculosa]
Length = 283
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 108/264 (40%), Positives = 165/264 (62%), Gaps = 4/264 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ +L +R+DGRNP E R ++ FG E G E +G+T +M V ++V+P
Sbjct: 8 SIPEKEFLYASLKQSLRVDGRNPLEMRSPTLTFGSELGWVECGMGKTRVMAQVDARMVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E SPMA +E GRPS+ V + R++D+ LR S VD ESLCVLAG
Sbjct: 68 PPERPLEGIITIHSELSPMASNEYEVGRPSDEEVTITRMLDKVLRRSDVVDKESLCVLAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW IR+ +H L + GN++D A +A + +L FRRPE + G+ EV VH P ER P+
Sbjct: 128 QRVWHIRLTIHCLADAGNMLDCACLAGIVALKHFRRPEVEVVGD---EVTVHHPLERAPM 184
Query: 192 PLIIHHLPIAVTFGFFSSESLL-VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL +HH P +TF +F S L V+DP+H E+ + G ++ LNA ++C +QK GG +
Sbjct: 185 PLSMHHTPFCLTFAYFPDPSTLPVLDPSHLEQRLSTGLLSVALNAQRELCVVQKAGGIPL 244
Query: 251 LQSVIMQCLRLASRMASDITKKIK 274
I++ + +A A ++ K ++
Sbjct: 245 TPEEILRIVNIAVEKAKELDKIVE 268
>gi|340959729|gb|EGS20910.1| hypothetical protein CTHT_0027490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 293
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 165/252 (65%), Gaps = 4/252 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++E++F+ AL G+R+DGR +YR LS+ FG + G ++V G+T ++ + ++ P
Sbjct: 8 SLSERQFVLQALQEGLRLDGRQLDQYRPLSLTFGDQYGVADVTFGKTRVLAKASAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPM P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YADRPLDGIFTIATELSPMTSPTFEVNRPTETEVLLSRLLEKTIRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W+IR+D+H++ + GNLVDAA IA +A+L FR+P+ S+ + + ++ P EREP+
Sbjct: 128 QKCWSIRVDVHVMSHDGNLVDAACIAVVAALRHFRKPDTSI---ESGVLTIYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VT+ FF E + V+D T EE V VG T ++N +G++C I K GG V
Sbjct: 185 PLSWLHTPFCVTWSFFGDEGEIAVLDATWLEEQVRVGSCTISMNKHGEICQIAKLGGTPV 244
Query: 251 LQSVIMQCLRLA 262
++QC +A
Sbjct: 245 EAVSLLQCTSIA 256
>gi|406604497|emb|CCH44059.1| hypothetical protein BN7_3618 [Wickerhamomyces ciferrii]
Length = 304
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 167/286 (58%), Gaps = 15/286 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ NEK F+ AL GIR+DGR ++R + I G E G +V+LG+T ++ +
Sbjct: 1 MAKGIEVSNNEKEFLFEALKQGIRLDGRKTDQFRDVEITLGDEYGYVDVKLGKTRVVARI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ ++V PY DR EG + TE SPMA FE GR S+ + + R V++ +R S A+D E
Sbjct: 61 SAEIVTPYEDRAFEGLFQVSTEISPMASAMFENGRQSDDELLITRTVEKAVRRSGALDLE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC++AG W+IR D+H LD G +DA+ IA +A L FR+ + ++ GE ++IVHP
Sbjct: 121 SLCIIAGSKCWSIRADVHFLDCDGGFIDASCIAVMAGLQHFRKNDITVSGE---QIIVHP 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTAT 232
EER P+ L I H+PI VTF F+ S+ + V+D T EE G +T T
Sbjct: 178 VEERAPVELSILHVPICVTFAFYNPTNVEENIKGDSNNEISVVDATLQEELSQDGTLTVT 237
Query: 233 LNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
+N N ++C I K GG + +M C R A +A IT +IK+ +E
Sbjct: 238 INKNREICQITKAGGLPMDALTLMDCSRKAYTIAEKITNQIKNLLE 283
>gi|392559741|gb|EIW52925.1| ribosomal protein S5 domain 2-like protein [Trametes versicolor
FP-101664 SS1]
Length = 283
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 169/269 (62%), Gaps = 4/269 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ AL+ +R+DGR E R + FG E G E LG+T ++ V G++V+P
Sbjct: 8 SIPEKEFVYGALNESLRLDGRAMLEMRAPMLTFGPELGCVECSLGKTRVLAQVDGKMVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E S MA FE GRPS+ V + R++D+ LR S AVD ESLCVLAG
Sbjct: 68 LPERPLEGIITIHSELSSMASNEFEPGRPSDQEVTITRMLDKVLRRSDAVDKESLCVLAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW IR+ +H+L + GN++D A +A + +L FRRPE + G+ EV +H P ER P+
Sbjct: 128 QRVWHIRLTIHVLSDAGNMLDCACLAGIVALKHFRRPEVEVQGD---EVTIHHPSERAPV 184
Query: 192 PLIIHHLPIAVTFGFFS-SESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL +HH P TF FFS + + ++DP+H EE + G ++ LNA ++C +QK GG +
Sbjct: 185 PLALHHAPFCFTFAFFSDTTTPPLLDPSHLEETLSAGLLSVALNAQRELCVVQKAGGVPL 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVET 279
+ ++ + +A + A ++ K ++ A++
Sbjct: 245 APADVLAIMDVAVQKARELDKVVESALKV 273
>gi|302854926|ref|XP_002958966.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
nagariensis]
gi|300255681|gb|EFJ39971.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
nagariensis]
Length = 516
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 168/333 (50%), Gaps = 70/333 (21%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
M R A+T+ ++ NE+ FI ALS R+DGR P++ RK +F +D S+ V LG T +
Sbjct: 1 MSQRDADTF-ISNNERDFILKALSEECRLDGRRPYDLRKPKFQFSLDDRSATVALGSTRV 59
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRP-------------------- 100
+ VT L P+ DRP+EG L EFSPMA P+FE GRP
Sbjct: 60 LSVVTASLEVPFPDRPSEGPLRFNVEFSPMASPAFEPGRPGRQGEAWDPTQGLGLGLGRR 119
Query: 101 ---------------SESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILD 145
E A+++ R+++RGLR+S AVD E+LCV+AG
Sbjct: 120 RRFSELLRRRPSCRGCEDAIQIARLIERGLRQSGAVDQEALCVVAG-------------- 165
Query: 146 NGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFG 205
R+PE +GGE +++VHPPE REPLPL IHHLP+AVTFG
Sbjct: 166 --------------------RKPEVEVGGESGTDILVHPPEVREPLPLTIHHLPVAVTFG 205
Query: 206 FFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRM 265
F LLV+DP+ EEA G T +N +VC + K G G+ M+C+RLA
Sbjct: 206 LFQGGDLLVVDPSWREEAAASGSCTVVMNPGREVCCVHKADGIGLTPDQFMRCVRLAGDK 265
Query: 266 ASDITKKIKDAVETYNTERALRKIKRHPTSITL 298
A + +K A+E + R +++RH + L
Sbjct: 266 AEQLVADLKAALEQHEVARVQARVRRHQQVVGL 298
>gi|358396358|gb|EHK45739.1| hypothetical protein TRIATDRAFT_140053 [Trichoderma atroviride IMI
206040]
Length = 293
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 178/280 (63%), Gaps = 8/280 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++E+ F A+S G+R+D R ++R L + FG E G ++V+LG+T ++ V+ ++ P
Sbjct: 8 SLSERTFTLQAISEGLRLDSRKLDQFRPLELSFGDEYGVADVKLGKTRVLAKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G I +E PM PSFE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 FSDRPFDGIFQITSELGPMVAPSFEVNRPTETEVLLARLLEKTVRRSGALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R+DLHIL GNL+D++ +A +A+L FRRP+ S+ GE + ++ EREP+
Sbjct: 128 QKCWSVRVDLHILSADGNLIDSSCLAVVAALRHFRRPDTSIEGET---LTIYTAAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P TF FF + ++++D T EE + VG +T +LN +G++C I K GG+ V
Sbjct: 185 PLSWLHSPFCTTFDFFGEDGEIVLVDTTWLEEQLRVGSVTFSLNKHGEICQISKLGGKPV 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
++I+QC ++ A +K+ D V+ E A R+ K
Sbjct: 245 EATLIIQC----AQTALAKSKEFTDLVDARLAEDAKRRDK 280
>gi|340515703|gb|EGR45955.1| predicted protein [Trichoderma reesei QM6a]
Length = 296
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 177/283 (62%), Gaps = 11/283 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQT---HIMGFVTGQL 68
+++E+ F A+S G+R+DGR E+R+L + FG E G ++V+LG+T ++ V+ ++
Sbjct: 8 SLSERTFTLQAISEGLRLDGRKLDEFRRLELSFGDEYGVADVKLGKTRHVQLLAKVSAEV 67
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P+ DRP +G I +E PM PS+E RP+E+ V L R++++ +R S A+DTESLC+
Sbjct: 68 TVPFADRPFDGIFQITSELGPMVAPSYEVNRPTETEVLLARLLEKTIRRSGALDTESLCL 127
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+AG+ W++R+DLH+L GNL+D+A A +A+L FR+P+ S+ GE + V+ P ER
Sbjct: 128 VAGQKCWSVRVDLHVLSADGNLIDSACFAVVAALRHFRKPDTSIEGET---LTVYTPAER 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
EP+PL H P TF FF E ++V+D T EE + V T +LN +G++C I K GG
Sbjct: 185 EPVPLSWLHSPFCATFDFFGDEGDIVVVDTTWLEEQLRVASCTFSLNKHGEICQISKLGG 244
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
+ ++++QC ++MA K+ D ++ E A R+ K
Sbjct: 245 RPIEATLVIQC----AQMALAKVKEFTDLLDAKLAEDAKRRDK 283
>gi|310789357|gb|EFQ24890.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 298
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 163/265 (61%), Gaps = 4/265 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+ NEK F+ AL +R+DGR +YRK + FG E G + V+LG+T ++ V+ ++ P
Sbjct: 8 SANEKAFVTQALKDNLRLDGREFDQYRKAQLTFGDEFGVANVELGKTRVLAKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP EG I +E SPMA P+FE RP+E+ V L RI+++ +R S A+DTESLC++AG
Sbjct: 68 YTDRPFEGIFQITSELSPMASPAFEVNRPTEAEVLLSRILEKTIRRSGALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW++R D+H+L + GNL DAA +A +A+L FR+P+ S G+ + + P EREP+
Sbjct: 128 QKVWSVRADVHVLSHDGNLTDAACLAVIAALRHFRKPDTSNEGQS---LTIFTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VTF FF E + ++D EE + MT +LN +G++ I K GG +
Sbjct: 185 PLSWLHSPFCVTFSFFGDEGEITLVDANWIEEQLRTSSMTVSLNKHGEISQISKLGGTPI 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKD 275
++ C +A + + D + + +
Sbjct: 245 EAVTLLHCGNVALQKSKDFSTLVDE 269
>gi|46122263|ref|XP_385685.1| hypothetical protein FG05509.1 [Gibberella zeae PH-1]
Length = 293
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 170/267 (63%), Gaps = 4/267 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++EK F+ AL+ G+R+DGR E+R L I FG E G +EV+ G+T ++ V+ ++ P
Sbjct: 8 SLSEKTFLAQALNEGLRLDGRKFDEFRPLEITFGDEYGVAEVKYGKTRVLAKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I +E SPM PS+E RPS V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YTDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTIRRSGALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K W+IR+DLH+L + GNL DAA +A +A+L FR+P+ S+ GE + ++ P EREP+
Sbjct: 128 KKCWSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPDSSIEGE---TLTIYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VT+ F+ + S +++D EE + V T +LN +G++ I K GG+ +
Sbjct: 185 PLSWLHSPFCVTYSFYGEDGSQVLVDTNWLEEKMRVSHCTYSLNKHGEISQISKLGGKAL 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
+ +QC + A + D++ + + +
Sbjct: 245 DAPLFIQCAQGALNRSKDLSNIVDNKL 271
>gi|358381167|gb|EHK18843.1| hypothetical protein TRIVIDRAFT_193923 [Trichoderma virens Gv29-8]
Length = 293
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 176/280 (62%), Gaps = 8/280 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++E+ F A+ G+R+DGR E+R L + FG E G ++V+LG+T ++ V+ ++ P
Sbjct: 8 SLSERTFTLQAIGEGLRLDGRKLDEFRSLELSFGDEYGVADVKLGKTRVLAKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G I +E PM PSFE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 FPDRPFDGIFQITSELGPMVAPSFEVNRPTETEVLLARLLEKTIRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R+DLH+L GNL+D++ A +A+L FR+P+ S+ GE + ++ EREP+
Sbjct: 128 QKCWSVRVDLHVLSADGNLIDSSCFAVVAALRHFRKPDTSMEGET---LTIYTAAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P +F FF + ++++D T EE + VG T +LN +G++C I K GG+ +
Sbjct: 185 PLSWLHSPFCTSFDFFGEDGEIVLVDTTWLEEQLRVGSCTFSLNKHGEICQISKLGGKPI 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
++I+QC ++MA K+ D V+ E A R+ K
Sbjct: 245 EATLIIQC----AQMALAKVKEFTDLVDRKLAEDAKRRDK 280
>gi|347967668|ref|XP_312616.5| AGAP002348-PA [Anopheles gambiae str. PEST]
gi|333468355|gb|EAA07626.5| AGAP002348-PA [Anopheles gambiae str. PEST]
Length = 439
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 167/268 (62%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT NEK F++ A+ IR+DGR E+RKL I FG E G V LG+T + +T ++V+
Sbjct: 6 LTTNEKSFVQKAILESIRLDGRTLDEFRKLRISFGSEWGLVHVILGETRALARITCEVVE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG L + E PMA P F+ GR S+ V+L RI++R L++S VD ESLC+++
Sbjct: 66 PKATRPNEGMLFLNVELGPMAAPHFDGGRQSDECVQLNRILERALKDSNCVDLESLCLVS 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
+ VW +R+D+ +L++ GN +D +IAAL +L F+RP+ ++ GED VIVH EE++P
Sbjct: 126 EEKVWKLRVDVTVLNHEGNAIDCCSIAALTALAHFKRPDITVDGED---VIVHTIEEKDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L + + H P+ V++ F+ + + DPT+ EE V +M LN+ G++C + G
Sbjct: 183 LKVTLFHYPLCVSYAIFNQGKIAIADPTYLEERVAEARMVFGLNSYGELCGLHLGGTTLT 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++++ AS+ A + ++IK A++
Sbjct: 243 SAELLLRTSAKASKRARLVVERIKAAIQ 270
>gi|395328492|gb|EJF60884.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 281
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 160/263 (60%), Gaps = 4/263 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ AL +R+DGR E R ++ FG E G E +G+T ++ V G++V+P
Sbjct: 8 SIPEKEFVYGALKQSLRLDGRAMLEMRTPTLSFGPELGWVECAMGKTRVLAQVDGKMVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG +SI +E SPMA +E GRP+E V L R++D+ LR S AVD ESLCVLAG
Sbjct: 68 PPERPLEGIISIHSELSPMASNEYEPGRPTEEEVALTRMLDKVLRRSDAVDKESLCVLAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW IR+ +H+L + GN+VD A +A + +L FRRPE + G+ E+ VH P ER P+
Sbjct: 128 QRVWHIRLTIHVLSDAGNMVDCACLAGIVALKHFRRPEVEVEGD---EITVHHPSERAPV 184
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL +HH P TF FF LV DP EE + G ++ LNA ++C +QK GG +
Sbjct: 185 PLSMHHTPFCFTFAFFPDAPPLV-DPARLEETLSAGLLSVALNAQKELCVVQKAGGSPLP 243
Query: 252 QSVIMQCLRLASRMASDITKKIK 274
++ + +A A ++ + ++
Sbjct: 244 AEEVLAIMDIAVAKARELDRLVE 266
>gi|119625656|gb|EAX05251.1| exosome component 9, isoform CRA_e [Homo sapiens]
Length = 242
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 161/238 (67%), Gaps = 3/238 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ G E
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGSE 240
>gi|346319692|gb|EGX89293.1| 3' exoribonuclease [Cordyceps militaris CM01]
Length = 297
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 177/284 (62%), Gaps = 12/284 (4%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++EK F+ AL+ G+R+D R +YR L++ FG E G +EVQ+G+T ++ V+ ++ P
Sbjct: 8 SISEKTFVIQALAEGLRLDNRKFEQYRSLNVTFGDEYGIAEVQVGKTKVLAKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G +I +E SPM PSFE RP+E+ V L R++++ +R S A+DTESLC++A
Sbjct: 68 FSDRPFDGVFTIASELSPMVAPSFEVNRPTETEVVLSRLLEKTIRRSGALDTESLCLVAA 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W+IR DLH+L + GNL+DA+ +A +A+L FR+PE ++ G + V+ P EREP+
Sbjct: 128 QKCWSIRADLHVLAHDGNLLDASCLAVIAALRHFRKPETTMEGG---VLTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-----SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
PL H P VTF FF E + +++D T EE + T ++N +G++C + K G
Sbjct: 185 PLSWLHSPFCVTFSFFGEEGDGDDTTVLLDTTWLEEQLRTSSCTFSMNKHGEICQVSKLG 244
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
G V + ++C ++ A + +K+ D ++ E A R+ K
Sbjct: 245 GAAVDAPLFVKC----AQTALNKSKEFTDLLDRKLAEDAKRRDK 284
>gi|336369000|gb|EGN97342.1| hypothetical protein SERLA73DRAFT_169702 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381784|gb|EGO22935.1| hypothetical protein SERLADRAFT_450637 [Serpula lacrymans var.
lacrymans S7.9]
Length = 282
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/264 (40%), Positives = 162/264 (61%), Gaps = 4/264 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ AL +R+DGR R S+ FG E G E +G T ++ V G++V+P
Sbjct: 7 SIPEKEFLYNALKESLRLDGRQFLHTRTPSLTFGPELGWVECAMGDTRVIAQVDGKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E SPMA +E GRPSE V + R++D+ +R S AVD ESLCVLAG
Sbjct: 67 LPERPFEGMITIHSEISPMASSEYEPGRPSEEEVIITRMLDKVIRRSDAVDKESLCVLAG 126
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW +R+ +H L + GN++D A +A + +L FRRPE + G+ EV +H P ER P+
Sbjct: 127 QRVWHLRLTIHCLADAGNMLDCACLAGIVALKHFRRPEVEVIGD---EVTIHAPTERAPI 183
Query: 192 PLIIHHLPIAVTFGFFSSESLL-VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL IHH P TF FF ++ V+DPT E+ + G +T LNA ++C +QK GG +
Sbjct: 184 PLAIHHTPYCFTFAFFPDPTIRPVVDPTLLEQRLSAGLLTIALNAQREICVLQKAGGTPL 243
Query: 251 LQSVIMQCLRLASRMASDITKKIK 274
+ I +R+A +A D+ + ++
Sbjct: 244 APNEISNVVRIAVGLAKDLDQLVE 267
>gi|400601572|gb|EJP69215.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 297
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 175/284 (61%), Gaps = 12/284 (4%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++EK F+ AL+ G+R+D R +YR L + FG E G +EVQLG+T ++ V+ ++ P
Sbjct: 8 SLSEKTFVTQALAEGLRLDNRTFEQYRSLKLTFGDEYGIAEVQLGKTKVLAKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G +I +E SPMA PSFE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 FSDRPFDGVFTIASELSPMAAPSFEVNRPTETEVILSRLLEKTIRRSGALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R+DLH+L + GNL+D + +A +A+L FR+PE ++ G + V+ P ER P+
Sbjct: 128 QKCWSVRVDLHVLAHEGNLLDTSCLAVVAALRHFRKPETTMEGG---VLTVYTPAERVPV 184
Query: 192 PLIIHHLPIAVTFGFF-----SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
PL H P VTF FF E +++D T EE + T ++N +G++C I K G
Sbjct: 185 PLSWLHSPFCVTFSFFGGNGDEEEEKVLLDTTWLEEQLRTSSCTFSMNRHGEICQISKLG 244
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
G+ V + + C ++ A TK+ D V+ E A R+ K
Sbjct: 245 GDAVDAPLFVAC----AQRALGKTKEFTDLVDRELAEDAKRRDK 284
>gi|408397088|gb|EKJ76238.1| hypothetical protein FPSE_03493 [Fusarium pseudograminearum CS3096]
Length = 293
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 169/267 (63%), Gaps = 4/267 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++EK FI AL+ G+R+DGR E+R L I FG E G +EV+ G+T ++ V+ ++ P
Sbjct: 8 SLSEKTFIAQALNEGLRLDGRKFDEFRPLEITFGDEYGVAEVKYGKTRVLAKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I +E SPM PS+E RPS V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YTDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTIRRSGALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K W+IR+DLH+L + GNL DAA +A +A+L FR+P+ S+ GE + ++ EREP+
Sbjct: 128 KKCWSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPDSSIEGE---TLTIYTSAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VT+ F+ + S +++D EE + + T +LN +G++ I K GG+ +
Sbjct: 185 PLSWLHSPFCVTYSFYGEDGSQVLVDTNWLEEKMRISHCTYSLNKHGEISQISKLGGKAL 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
+ +QC + A + D++ + + +
Sbjct: 245 DAPLFIQCAQGALNRSKDLSNLVDNKL 271
>gi|429850259|gb|ELA25551.1| 3 exoribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 298
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 162/265 (61%), Gaps = 4/265 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+ NEK F+ AL +R+D R +YRK+ + FG E G + V+LG+T I+ V+ ++ P
Sbjct: 8 SANEKAFVTQALKENLRLDSREFDQYRKVQLTFGDEYGVANVELGKTTILVKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP EG I TE SPMA P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YADRPFEGIFQIVTELSPMASPAFEVNRPTEAEVLLSRLLEKTIRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW++R D+H+L + GNL DAA + +A+L FR+P+ S GE + + P EREP+
Sbjct: 128 QKVWSVRADVHVLSHDGNLTDAACLGVIAALRHFRKPDTSNEGE---ALTIFTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VTF F+ E + +ID EE + +T +LN +G++ I K GG V
Sbjct: 185 PLSWLHSPFCVTFSFYGDEGEITLIDANWLEEQLRASSLTVSLNKHGEISQISKLGGTPV 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKD 275
++ C +A + A D + + +
Sbjct: 245 EAVTLLHCGNVALQKAKDFSSLVDE 269
>gi|320591825|gb|EFX04264.1| exosome subunit rrp45 [Grosmannia clavigera kw1407]
Length = 294
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 170/269 (63%), Gaps = 5/269 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NE+ F++ AL G R+DGR+ +YR + + G E G ++V++G T ++ T ++ P
Sbjct: 8 SLNERAFVKQALQDGQRLDGRSFEDYRPIDLTLGDEFGVADVRIGNTRVVAKATAEVTTP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G +I TE SPMA PSFE GRPSE+ V L RI+++ +R S A+DTESLC+ AG
Sbjct: 68 FSDRPFDGIFNIVTELSPMASPSFEAGRPSEAEVLLSRILEKTIRRSGALDTESLCLAAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
W++R+D+H++ + GNLVDA+ +A +A+L FR+ E S+ ++ + V+ P EREP+
Sbjct: 128 NKCWSVRVDVHVMSHEGNLVDASCLAVVAALRHFRKAETSI---ENGVLTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE--SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
PL H P VTF FF ++ + ++D + EE V T ++N +G++C + K GG
Sbjct: 185 PLSWLHSPFCVTFSFFEADDTEITLLDASLLEEQTRVSSCTISINRHGEICQVAKLGGTP 244
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVE 278
V I++C +A A D++ + +E
Sbjct: 245 VEAVTILKCTSIALAKAKDLSVFLDKKLE 273
>gi|452000347|gb|EMD92808.1| hypothetical protein COCHEDRAFT_1020759 [Cochliobolus
heterostrophus C5]
Length = 291
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/274 (40%), Positives = 168/274 (61%), Gaps = 4/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++NE+ FI+ AL IRID R +R L + FG E G ++VQLG+T ++ ++ +
Sbjct: 7 ISLNEREFIKQALQEQIRIDRRAFDAFRPLELTFGDEYGVADVQLGKTRVIARISVDVTT 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R +G I TEFSPMA P+FE GRP+++ V L RI+++ +R S A+DTESLC++A
Sbjct: 67 PPPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +A+R D+HI+D+ G L+DA+ IA +A+L FRRP+ + GE + + E EP
Sbjct: 127 GLKCFALRADVHIVDHDGGLIDASCIAVMAALQHFRRPDVVVEGE---KATILSVREHEP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P+ VTF +F E L ++D EE V G++ T+N +G+VC I K GG +
Sbjct: 184 IPLSILHQPLCVTFSYFEGE-LFLVDANLAEEQVRQGEVIITMNKHGEVCQIAKYGGATI 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
I+ C +A + DI I+ +E ER
Sbjct: 243 HPLAILNCTNIAQQKVKDIGAFIQKRLEEDAKER 276
>gi|452843608|gb|EME45543.1| hypothetical protein DOTSEDRAFT_71300 [Dothistroma septosporum
NZE10]
Length = 299
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/271 (40%), Positives = 166/271 (61%), Gaps = 3/271 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
NE+ F+ TAL +R DGR ++R + + FG E G ++V+LG+T +M ++ +LV PY
Sbjct: 10 NEREFLLTALRENVRFDGRAFDQFRDVQLAFGEEYGVADVRLGKTRVMVTISAELVTPYP 69
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
DR +G +I TE SP+A P+FE GR ++ V L RI+++ +R S A+DTESLC++AG
Sbjct: 70 DRKFDGVFTISTELSPIASPAFEVGRQDQTEVLLSRILEKTIRRSGALDTESLCIIAGAK 129
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
W IR D+HILD+ GN+VDA+ IA +A+L+ FRRP+ + GE EV V+ EREP+ L
Sbjct: 130 CWHIRADIHILDHDGNIVDASCIALVAALMHFRRPDHEIHGE---EVTVYGLREREPVKL 186
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ H P +T ++ + +++ D T EE G + ++N G++C I K GG V
Sbjct: 187 QMQHQPFCITTSYYEAGEIMLHDATLLEEQCREGDVVVSVNRFGEICQIAKFGGTLVDGL 246
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTER 284
I+ C +A A + K +K +E ER
Sbjct: 247 SILTCTNMALGKAKALDKLVKAKLEEDEKER 277
>gi|409075918|gb|EKM76293.1| hypothetical protein AGABI1DRAFT_122693 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 283
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 168/274 (61%), Gaps = 9/274 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ +L +R+DGR+ + RKL +FG E G E +LG+T ++ V ++V+P
Sbjct: 7 SIPEKEFLYASLKESLRLDGRSLLQQRKLEFRFGPELGYVECKLGKTMVIAQVDAKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGR-PSESAVELGRIVDRGLRESRAVDTESLCVLA 130
+RP EG++SI +E SPMA +E GR SE V + R++D+ LR S A+D ESLC+LA
Sbjct: 67 TPERPFEGSISIHSEISPMASSEYEAGRAASEEEVMINRMLDKVLRRSDAIDKESLCILA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G VW +RI H L + GN++D A +A + +L FRRPE + G+ EVIVHPP ER P
Sbjct: 127 GHRVWHLRITFHFLSDAGNMLDCACLAGIVALRHFRRPEVEVIGD---EVIVHPPTERAP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLL-VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+PL IHH P TF FF + V+DP+ E+ + G ++ LNA ++C +QK GG
Sbjct: 184 VPLAIHHTPFCFTFAFFPDVTTSPVLDPSQLEQRLSAGLLSIALNAQKELCVLQKLGGVP 243
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ I++ + + + A K++ + VET TE
Sbjct: 244 LPHEEIIRLVDTSVQKA----KELHEFVETRLTE 273
>gi|426192955|gb|EKV42890.1| hypothetical protein AGABI2DRAFT_228615 [Agaricus bisporus var.
bisporus H97]
Length = 283
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 168/274 (61%), Gaps = 9/274 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ +L +R+DGR+ + RKL +FG E G E LG+T ++ V ++V+P
Sbjct: 7 SIPEKEFLYASLKESLRLDGRSLLQQRKLEFRFGPELGYVECNLGKTMVIAQVDAKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGR-PSESAVELGRIVDRGLRESRAVDTESLCVLA 130
+RP EG++SI +E SPMA +E GR SE V + R++D+ LR S A+D ESLC+LA
Sbjct: 67 TPERPFEGSISIHSEISPMASSEYEAGRAASEEEVMINRMLDKVLRRSDAIDKESLCILA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G VW +RI H L + GN++D A +A + +L FRRPE + G+ EVIVHPP ER P
Sbjct: 127 GHRVWHLRITFHFLSDAGNMLDCACLAGIVALRHFRRPEVEVIGD---EVIVHPPTERAP 183
Query: 191 LPLIIHHLPIAVTFGFF-SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+PL IHH P TF FF + + V+DP+ E+ + G ++ LNA ++C +QK GG
Sbjct: 184 VPLAIHHTPFCFTFAFFPDATTSPVLDPSQLEQRLSAGLLSIALNAQKELCVLQKLGGVP 243
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ I++ + + + A K++ + VET TE
Sbjct: 244 LPHEEIIRLVDTSVQKA----KELHEFVETRLTE 273
>gi|365984549|ref|XP_003669107.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
gi|343767875|emb|CCD23864.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
Length = 306
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +F+ AL R+DGR+ ++R + I FG E G +++G+T + +
Sbjct: 1 MAKEIEISNSESKFLLEALRQNYRLDGRSFSQFRDVKIAFGDEYGDVTIEMGKTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETG-RPSESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA P FE G +E V + RI+++ +R S A+D
Sbjct: 61 SCQITQPYEDRPFEGLFLISTENSPMAGPQFENGNNTNEDEVLIARIIEKAVRRSGALDI 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H L+ G +DA+ IA +A LL FR+P+ ++ GE +VI+H
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMAGLLHFRKPDITVHGE---QVIMH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P +EREP+PL I H+PI VTF FF ++ + +ID T EE + G +T
Sbjct: 178 PVDEREPVPLGILHVPICVTFSFFNPMDTEENIKGDTNAEITIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
TLN N +V + K GG + +M+C R A + +IT KI
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALSLMECCRKAYAITEEITDKI 279
>gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum]
gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum]
Length = 389
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 174/274 (63%), Gaps = 3/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+T E++F+ LS R+DGR+ E+R L +KFG++ GS V LG T ++ + ++ Q
Sbjct: 9 ITNCERKFLMKCLSEWRRLDGRSFDEFRPLELKFGKQWGSCYVSLGNTKVLAQTSCEIQQ 68
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP+EG L+I E +P+A P FE GR SE +V+L R++++ +++S+AVD ESLC+
Sbjct: 69 PKSSRPSEGILNINIELNPLAAPHFEAGRQSELSVQLNRLLEKCVKDSKAVDLESLCIKT 128
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
+ VWA+++D+++L++ GN++D A+IA LASL FRRP+ + GE E I+H ++R+P
Sbjct: 129 NEKVWALKVDINVLNHEGNILDCASIAMLASLTHFRRPDVTCDGE---EFIIHSYQQRDP 185
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+P +IHH P+ +T+ F+ ++ DP+ EE +T LN ++CA+ G +
Sbjct: 186 IPTVIHHYPVCITYAIFNGGEYILADPSLLEEGSADAMLTIGLNGFKELCALHLGGKAEL 245
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
S+I+ + A+ A+ + ++IK +V+ +R
Sbjct: 246 APSIILSTVSKATSRATVVIEEIKKSVKADTEQR 279
>gi|451850324|gb|EMD63626.1| hypothetical protein COCSADRAFT_26966 [Cochliobolus sativus ND90Pr]
Length = 291
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 167/274 (60%), Gaps = 4/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++NE+ FI+ AL IRID R +R L + FG E G ++VQLG+T ++ ++ +
Sbjct: 7 ISLNEREFIKQALQEQIRIDRRAFDAFRPLELTFGDEYGVADVQLGKTRVIARISVDVTT 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R +G I TEFSPMA P+FE GRP+++ V L RI+++ +R S A+DTESLC++A
Sbjct: 67 PPPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +A+R D+HI+D+ G L+DA+ IA +A+L FRRP+ + GE + + EREP
Sbjct: 127 GLKCFALRADVHIVDHDGGLIDASCIAVMAALQHFRRPDVVVEGE---KATILSVREREP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P+ VTF F E LV D EE V G++ T+N +G+VC I K GG +
Sbjct: 184 IPLSILHQPLCVTFSCFEGEIFLV-DANLAEEQVRQGEVIITMNKHGEVCQIAKYGGATI 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
++ C +A + DI I+ +E ER
Sbjct: 243 HPLALLNCTNIAQQKVKDIGAFIQKRLEEDAKER 276
>gi|302685534|ref|XP_003032447.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
gi|300106141|gb|EFI97544.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
Length = 281
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 150/236 (63%), Gaps = 3/236 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ + G+R+DGR P E R I FG E G E GQT ++ V ++V+P
Sbjct: 7 SIPEKEFVLRTVQEGLRLDGRQPLEMRTPEITFGPELGWVECAFGQTRVVAQVDAKMVRP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP +G ++I +E SPMA +E GR SE V + R++D+ ++ S AVD ESLCVLAG
Sbjct: 67 PPERPFDGIITIHSELSPMASTEYEIGRASEEEVVITRVLDKLIKRSEAVDRESLCVLAG 126
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW +R+ +H L + GN++D A AA+A+L FRRP+ + G+ EV +HPP ER P+
Sbjct: 127 ERVWHVRLTIHCLADAGNMLDCACFAAMAALKHFRRPDVEVVGD---EVTIHPPSERAPV 183
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL I+H P +TF FF S + ++DP+ E + +G ++ LNA ++C +QK GG
Sbjct: 184 PLAINHAPYCLTFAFFGSGAPPLLDPSQLEATLALGTLSVALNAQREICVMQKMGG 239
>gi|289740851|gb|ADD19173.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 404
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 167/268 (62%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ EK F+ A+ R+DGRN E+R L I +G + GS V LG+T ++G V+ +L +
Sbjct: 6 LSLCEKNFVIQAIKQNQRLDGRNNDEFRSLRINYGSDWGSVIVALGETKVLGQVSSELGE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG L I E PMA FE GR E V++ R ++R ++SRA+D ESLCV++
Sbjct: 66 PKATRPNEGILHINVELGPMAAAHFEAGRNCELTVQINRTLERTFKDSRAIDLESLCVIS 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
+ VW +R+DL++L++ GNL+D ++A L +L FRRP+ S+ ED E+ +H E+EP
Sbjct: 126 EERVWMLRVDLNVLNHEGNLIDCCSVATLCALAHFRRPDVSV-IED--EIRIHTSAEKEP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L +++HH P+ V++ F + V DPT EE + +M +N+ G++C + G
Sbjct: 183 LKMVMHHYPVCVSYVIFDGGRIAVADPTVAEERISDTQMIFGINSFGELCCLNLGGSSLT 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++++QC + A++ A + K++K ++E
Sbjct: 243 SPTLLLQCSKKAAKHAKSVVKQVKQSLE 270
>gi|58264608|ref|XP_569460.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134109839|ref|XP_776469.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259145|gb|EAL21822.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225692|gb|AAW42153.1| exosome complex exonuclease rrp45, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 281
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 167/272 (61%), Gaps = 4/272 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+ F+ AL+ G R+DGR P + R + FG E G E +LG+T I+ V+ +V+P D
Sbjct: 11 QNEFLLAALAEGKRLDGRLPLQMRDVHYIFGDELGCVECRLGKTAILAQVSATIVKPRDD 70
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP EG L I +E PMA +E GRP + V +GR++++ +R + A+D E+LC+LAG+ V
Sbjct: 71 RPYEGFLLINSEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKV 130
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+ LH L + GNL+D A +A +A+L FR+P+ + G+ EVI+H PEER P+PL
Sbjct: 131 WQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGD---EVIIHSPEERAPVPLA 187
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH P+ +TF +F + ++DP+H E + G +T TLNA ++C + K GG +
Sbjct: 188 IHHTPLCLTFAYFENLP-PILDPSHVEMMLCSGTLTLTLNAQREICVLSKAGGAPLGAEE 246
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERAL 286
IM +++ ++ + +++ +E T R +
Sbjct: 247 IMGVVKVGVDKVRELVRHLEEELEKDRTSRVV 278
>gi|449499646|ref|XP_002187964.2| PREDICTED: exosome complex component RRP45 [Taeniopygia guttata]
Length = 395
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 151/226 (66%), Gaps = 3/226 (1%)
Query: 53 VQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVD 112
V+LG+T ++ V+ +LV P RP EG L E SPMA P E GR SE V L R+++
Sbjct: 2 VELGRTRVLAQVSCELVPPKPSRPTEGVLFFNLELSPMAAPGLEPGRQSELVVSLNRLLE 61
Query: 113 RGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL 172
R LR+S+ ++TESLCV+AG+ VW IR+D+H+L++ GN+ DAA+IA + +L FRRP+ S+
Sbjct: 62 RCLRDSKCIETESLCVVAGEKVWQIRLDMHLLNHDGNITDAASIAGIVALCHFRRPDVSV 121
Query: 173 GGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTAT 232
GE EV V+ EER+P+PL IHH+PI V+F FF + L++DPT EE VM G +
Sbjct: 122 QGE---EVTVYTAEERDPVPLSIHHMPICVSFAFFHQGTYLLVDPTEREERVMDGLLVIA 178
Query: 233 LNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
+N + ++C IQ G +L I++C ++ + ++IT+ I+ A+E
Sbjct: 179 MNKHHEICTIQSSGVVMLLPDQILRCSKITAVKVAEITELIQKALE 224
>gi|449271151|gb|EMC81699.1| Exosome complex exonuclease RRP45, partial [Columba livia]
Length = 389
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 149/219 (68%), Gaps = 3/219 (1%)
Query: 60 IMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR 119
++ V+ +LV P +RP EG L E SPMA P FE GR E V++ R+++R LR S+
Sbjct: 2 VLAQVSCELVPPKPNRPAEGILFFNFELSPMAAPGFEPGRQPELLVKVNRLIERCLRNSK 61
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
VDTESLCV+AG+ VW IR+DLH+L++ GN++DAA+IA + +L FRRP+ S+ GE E
Sbjct: 62 CVDTESLCVVAGEKVWQIRLDLHLLNHDGNIIDAASIAGIVALCHFRRPDVSVQGE---E 118
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V V+ PEER+P+PL IHH+PI V+F F+ + L++DP+ EE VM G + +N +G++
Sbjct: 119 VTVYTPEERDPVPLSIHHMPICVSFAFYHQGTYLLVDPSEREERVMDGLLVIAMNKHGEI 178
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
C IQ GG ++ +++C + + ++IT+ I+ A+E
Sbjct: 179 CTIQSSGGIMLVTDQVLRCSNITAVKVAEITELIQKALE 217
>gi|320582164|gb|EFW96382.1| Exosome non-catalytic core component [Ogataea parapolymorpha DL-1]
Length = 311
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 173/298 (58%), Gaps = 21/298 (7%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRED-GSSEVQLGQTHIMGF 63
+ + ++ NEK+F+ AL IR+DGR + R + I R++ G +EV LG+T +
Sbjct: 1 MVRDYDISNNEKQFVLAALEQNIRLDGRKLLQMRDVQISVSRDEYGYAEVSLGKTKVACR 60
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETG-----RPSESAVELGRIVDRGLRES 118
VT ++ +PY DRP +G I T+ SP+ P FE+G + S + + R++++ +R S
Sbjct: 61 VTAEITKPYEDRPFDGIFQISTDISPICSPFFESGLTTGSKQSNDEILISRLIEKAVRRS 120
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
A+D ESLC++AG WA+R DL L+ GN +D ++IA + +LL FR+P+ + G +
Sbjct: 121 GALDLESLCIIAGSKCWAVRADLQFLNYDGNFIDISSIAVMVALLHFRKPDMEIDGNN-- 178
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFS------------SESLLVIDPTHHEEAVMV 226
VI+ ++R P+PL I H+P+ TF F++ + L+++D EE + +
Sbjct: 179 -VILFDEDQRNPVPLSILHIPLCFTFQFYNPNDDEENIKGNLNNELILLDANLIEERLSL 237
Query: 227 GKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
G MT T+N N ++C + K GG + S+IM C + AS + D+T+KI D ++ N R
Sbjct: 238 GSMTLTINKNKELCQMVKCGGLNIDASMIMNCCQHASNLVDDLTRKINDVIKKDNELR 295
>gi|213410258|ref|XP_002175899.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
gi|212003946|gb|EEB09606.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
Length = 291
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/266 (41%), Positives = 168/266 (63%), Gaps = 3/266 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+ N + FI ALS+G+R+DGR +R+ IKFG + G +V LG+T ++ +T Q+ +P
Sbjct: 8 STNNRDFILEALSNGVRLDGREMHAFRQPVIKFGDKFGEVDVSLGETRVLCHITAQIAKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D+P +G +I TE +PMA PS E GR S+ V + R+++ +R SRA+DTESLC+L+G
Sbjct: 68 YPDKPFDGIFTIHTELTPMAHPSLEAGRLSDQEVLISRLIETSVRRSRALDTESLCILSG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R +H +++ GN+VDAA +A +A+L +RRP+ EV+VH PEER P+
Sbjct: 128 QKCWSVRATVHFVNHDGNMVDAACLAVVAALCHYRRPD---VTVTGEEVVVHSPEERVPV 184
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL + H+PI TF FF S+ V D T EE + G MT TLN N ++C K GG +
Sbjct: 185 PLSVLHMPICTTFFFFHDGSISVTDATAEEEELSTGTMTITLNKNREICQFFKAGGVPID 244
Query: 252 QSVIMQCLRLASRMASDITKKIKDAV 277
Q+ I+ C A + +I +++K +
Sbjct: 245 QTKIISCAHAAFKNTQEICEQLKQVL 270
>gi|156841697|ref|XP_001644220.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
gi|156114858|gb|EDO16362.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
Length = 305
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 168/293 (57%), Gaps = 16/293 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E++F+ AL R+DGR ++R + I FG+E G + V +G T + V
Sbjct: 1 MAKDIEISTSEQKFLLEALRQNQRLDGREFDQFRDVEIDFGKEFGDATVTMGNTKVQCRV 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ + QPY DRP EG I TE SPMA P FE G + E V RI+++ +R S A+D
Sbjct: 61 SCSIAQPYEDRPFEGLFFISTESSPMAGPQFENGNNTGEDEVLCARIIEKAVRRSGALDI 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WAIR D+H L+ G +DA+ IA +A+L+ FR+P+ S+ GE +V VH
Sbjct: 121 EGLCIVAGSKCWAIRADVHFLNCDGGFIDASCIAVMAALMHFRKPDISVFGE---QVTVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSES------------LLVIDPTHHEEAVMVGKMTA 231
P +EREP+PL I H+PI VTF FF+ E + +ID + EE + G +T
Sbjct: 178 PVDEREPVPLGILHIPICVTFSFFNPEDTEENIKGESNSEITIIDASLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
TLN N +V + K GG + +MQC A + IT I + ++ + ER
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALSLMQCCHKAFGITEQITDLIIEKIKEESKER 290
>gi|427795753|gb|JAA63328.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 477
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 164/272 (60%), Gaps = 4/272 (1%)
Query: 3 TRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMG 62
T L+N L+ E+ FI+ A+S R+D R E R + + FG + G LG T +M
Sbjct: 44 TMLSNVDLLSNCERDFIKIAVSEDKRVDHRTSKESRHVRVSFGLDRGCCVASLGDTKVMA 103
Query: 63 FVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD 122
V+ +++ P RP EG L + E SPMA P FE GR + VE+ R+++R +R+S+ +D
Sbjct: 104 QVSAEIIVPKPGRPTEGELFVNLELSPMAAPHFEAGRLGDYGVEVARLLERCIRDSQCID 163
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV 182
ESLCV++G+ VWA+R+D +L++ GN+V+ A IA + +L+ FRRP+ ++ G EV V
Sbjct: 164 LESLCVVSGEKVWALRVDAQVLNHQGNIVECAGIATIGALMHFRRPDVTVIGT---EVTV 220
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
H P +REP+PL +HH P V F F+ ++IDPT EE + G ++ NA+ ++C +
Sbjct: 221 HNPRDREPVPLHLHHYPFLVCFAFYDDGKTVLIDPTDLEERIAEGLLSVAANAHEEICLL 280
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
+ G V + +++ C RLAS A + IK
Sbjct: 281 HQHGCT-VRKDLVLLCSRLASVRAKTLATMIK 311
>gi|427795691|gb|JAA63297.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 514
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 164/272 (60%), Gaps = 4/272 (1%)
Query: 3 TRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMG 62
T L+N L+ E+ FI+ A+S R+D R E R + + FG + G LG T +M
Sbjct: 44 TMLSNVDLLSNCERDFIKIAVSEDKRVDHRTSKESRHVRVSFGLDRGCCVASLGDTKVMA 103
Query: 63 FVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD 122
V+ +++ P RP EG L + E SPMA P FE GR + VE+ R+++R +R+S+ +D
Sbjct: 104 QVSAEIIVPKPGRPTEGELFVNLELSPMAAPHFEAGRLGDYGVEVARLLERCIRDSQCID 163
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV 182
ESLCV++G+ VWA+R+D +L++ GN+V+ A IA + +L+ FRRP+ ++ G EV V
Sbjct: 164 LESLCVVSGEKVWALRVDAQVLNHQGNIVECAGIATIGALMHFRRPDVTVIGT---EVTV 220
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
H P +REP+PL +HH P V F F+ ++IDPT EE + G ++ NA+ ++C +
Sbjct: 221 HNPRDREPVPLHLHHYPFLVCFAFYDDGKTVLIDPTDLEERIAEGLLSVAANAHEEICLL 280
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
+ G V + +++ C RLAS A + IK
Sbjct: 281 HQHGC-TVRKDLVLLCSRLASVRAKTLATMIK 311
>gi|393247723|gb|EJD55230.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 285
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 165/269 (61%), Gaps = 6/269 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTH-IMGFVTGQLVQ 70
++ EK F+ AL +R+DGR E R+ + FG + G E LG+T+ ++ + ++V+
Sbjct: 8 SIPEKEFVLEALKQCLRVDGRALLEMRQPTFTFGPDFGYVECSLGKTNRVIASIEAKMVR 67
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFE--TGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P DR EG ++I +E SPMA +E GRPSE VE+ R++D+ LR S A+D ESLCV
Sbjct: 68 PQPDRLFEGIITIHSELSPMASSEYEGGYGRPSEQEVEITRMLDKVLRRSDAIDKESLCV 127
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
LAG+ VW +R+ H L + GN++D A +A + +L FRRPE + G+ EV +H PEER
Sbjct: 128 LAGQRVWHLRLTFHFLADAGNMLDCACLAGITALKHFRRPEVEVVGD---EVTIHAPEER 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
PLPL IHH P+ +TF F ++ ++DPT+ E+ + G M+ LNA ++C +QK GG
Sbjct: 185 APLPLAIHHTPLCLTFALFDNDLPPLLDPTYLEQTLCSGTMSIALNAQRELCVVQKAGGV 244
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ I++ L + ++ + ++ A+
Sbjct: 245 PLEADAILKLLEIGVLKVKELDQLVEQAL 273
>gi|321253395|ref|XP_003192721.1| exosome complex exonuclease rrp45 [Cryptococcus gattii WM276]
gi|317459190|gb|ADV20934.1| Exosome complex exonuclease rrp45, putative [Cryptococcus gattii
WM276]
Length = 281
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 165/272 (60%), Gaps = 4/272 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+ F+ AL+ G R+DGR P + R + FG E G E +LG+T I+ V+ +V+P D
Sbjct: 11 QNEFLLAALAEGKRLDGRLPLQMRDVRYIFGDELGCVECRLGKTSILAQVSATIVKPRDD 70
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP EG L I +E PMA +E GRP + V +GR++++ +R + A+D E+LC+LAG+ V
Sbjct: 71 RPYEGFLLINSEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKV 130
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+ LH L + GNL+D A +A +A+L FR+P+ + G+ EVI+H P+ER P+ L
Sbjct: 131 WQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGD---EVIIHSPDERAPVALA 187
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH P+ +TF +F + ++DP+H E + G +T TLNA ++C + K GG +
Sbjct: 188 IHHTPLCLTFAYFENLP-PILDPSHIEAILCSGTLTLTLNAQREICVLSKAGGAPLGAEE 246
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERAL 286
IM ++ ++ + +++ +E T R +
Sbjct: 247 IMGVVKFGVDKVRELVRHLEEELEKDRTSRVV 278
>gi|330935982|ref|XP_003305202.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
gi|311317878|gb|EFQ86700.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
Length = 291
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 169/274 (61%), Gaps = 4/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++NE+ FI+ AL IRID R +R L + FG E G ++VQLG+T ++ ++ +
Sbjct: 7 ISLNEREFIKQALQEQIRIDRRAFDAFRPLELTFGDEYGVADVQLGKTRVIARISVDVTT 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R +G I TEFSPMA P+FE GRP++S V L RI+++ +R S A+DTESLC++A
Sbjct: 67 PLPERKFDGIFQIVTEFSPMASPAFEVGRPTDSEVILSRILEKAIRRSNALDTESLCIIA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +A+R D+HI+D+ G L+DA+ IA +A+L FRRP+ + GE + + +REP
Sbjct: 127 GSKCFALRADVHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGE---KATILSVRDREP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P+ VTF +F E + +ID EE V G++ T+N +G++C + K GG +
Sbjct: 184 IPLSILHQPLCVTFSYFEDE-IFLIDANLAEEQVRQGEIILTMNKHGELCQMAKYGGATI 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
++ C +A +++ I+ +E +R
Sbjct: 243 NPLALLNCTNVALEKVKEMSAFIQKRLEEDAKQR 276
>gi|393215116|gb|EJD00608.1| hypothetical protein FOMMEDRAFT_112158 [Fomitiporia mediterranea
MF3/22]
Length = 282
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 156/249 (62%), Gaps = 4/249 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ E+ F AL +R+DGR P + R + + FG E G E LG+T ++ V ++V+P
Sbjct: 7 SLPERDFTLEALKQSLRVDGRGPLDMRAVVLSFGPELGWVECSLGKTRVLAHVDAKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E SPMA FE GRPSE V + R++++ LR S AVD ESLCVLAG
Sbjct: 67 PEERPLEGIITIHSEISPMASSDFEPGRPSEEEVLITRMLEKVLRRSDAVDKESLCVLAG 126
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW +R+ +H L + GN++D A +A + +L FRRPE + G+ EV +H PEER P+
Sbjct: 127 QRVWHLRLTIHFLADAGNMLDCACLAGMVALKHFRRPEVEVIGD---EVTLHSPEERAPV 183
Query: 192 PLIIHHLPIAVTFGFFSS-ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL +HH P +TF +F ++ ++DP E+ + G ++ LNA ++C +QK GG +
Sbjct: 184 PLSLHHTPFCLTFAYFDEPDTPSILDPARLEQTLATGTLSLALNAQRELCVVQKAGGVPL 243
Query: 251 LQSVIMQCL 259
Q I++ +
Sbjct: 244 AQEEILRMI 252
>gi|189206730|ref|XP_001939699.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975792|gb|EDU42418.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 291
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 169/274 (61%), Gaps = 4/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++NE+ FI+ AL IRID R +R L + FG E G ++VQLG+T ++ ++ +
Sbjct: 7 ISLNEREFIKQALQEQIRIDRRAFDAFRPLELTFGDEYGVADVQLGKTRVIARISVDVTT 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R +G I TEFSPMA P+FE GRP+++ V L RI+++ +R S A+DTESLC++A
Sbjct: 67 PLPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTESLCIIA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +A+R D+HI+D+ G L+DA+ IA +A+L FRRP+ + GE + + +REP
Sbjct: 127 GSKCFALRADVHIIDHDGGLIDASCIAVMAALQHFRRPDVVVEGE---KATILSVRDREP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P+ VTF +F E + +ID EE V G++ T+N +G++C I K GG +
Sbjct: 184 IPLSILHQPLCVTFSYFEDE-IFLIDANLAEEQVRQGEVILTMNKHGELCQIAKYGGATI 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
++ C +A +++ I+ +E +R
Sbjct: 243 NPLALLNCTNVALEKVKEMSAFIQKRLEEDAKQR 276
>gi|198419225|ref|XP_002123693.1| PREDICTED: similar to Exosome component 9 [Ciona intestinalis]
Length = 385
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 160/271 (59%), Gaps = 3/271 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E F+ AL+ IRIDGR EYR ++I F + G V +G T +M V +L +P
Sbjct: 12 EHEFVVEALTKKIRIDGRGMLEYRGITIHFSLDHGCCVVNMGGTKVMAQVAAELCRPRES 71
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R +EG+L + E S MA P + +P +S EL ++++R + S+AVD E LCV G+
Sbjct: 72 RQSEGSLGVQVEMSMMAAPHLDPAKPGDSGAELQQMLERSIVMSQAVDLEELCVRVGEKS 131
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W I+I +H+L + GNL+D A IA++ SL F+RP+ S+ G+ EV +H E++ P+PL
Sbjct: 132 WNIQIFVHVLSHDGNLLDCATIASMTSLKHFKRPDVSVVGQ---EVTIHKFEDKHPIPLT 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+HH+P V+F FF L+V+DPT +EE VM GK+ +N + +VC +Q G + +
Sbjct: 189 LHHVPFCVSFAFFQGGGLMVVDPTLNEEKVMDGKLMVAVNKHKEVCCLQMNGQLQLSKEQ 248
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERA 285
I+ C +AS A ++ ++E ++A
Sbjct: 249 ILNCTNIASTKAQTFYDIMETSLENDQKQKA 279
>gi|410083339|ref|XP_003959247.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
gi|372465838|emb|CCF60112.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
Length = 306
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 171/293 (58%), Gaps = 16/293 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ E +FI AL R+DGR+ E+R++ IKFG E G V++G+T + +
Sbjct: 1 MAKDIEISTAEAQFIVGALKERYRLDGRSFDEFREVKIKFGNEYGDVMVEMGETKVHVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETG-RPSESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE +PMA P FE G S V + RI+++ +R S A+D
Sbjct: 61 SCQVTQPYEDRPFEGLFLISTESTPMAGPQFENGTNTSGDEVLISRIIEKAIRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R ++H L+ G +DA+ IA +A L+ F++P+ ++ GE +VIVH
Sbjct: 121 EGLCIVAGSKCWAVRANVHFLNCDGGFIDASCIAVIAGLMHFKKPDITVHGE---KVIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P +EREP+PL I H+PI VTF FF S++ + +ID T EE + G +T
Sbjct: 178 PLDEREPVPLGILHIPICVTFSFFNPQDTEENIKGESNQEIAIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
TLN N +V + K GG + +M+C A + IT +I + ++ ER
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALQLMECCHKAYSIIERITDQIINQIKEDYKER 290
>gi|325184014|emb|CCA18471.1| exosome complex exonuclease RRP45like protein putati [Albugo
laibachii Nc14]
Length = 473
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 167/276 (60%), Gaps = 16/276 (5%)
Query: 14 NEKRFIETALSS--GIRIDGRNPFEYRKLSIKFGREDGSSEVQL--GQTHIMGFVTGQLV 69
NE+ FI L S IR DGR + RK+SI+F R S+ L G T ++ V G++V
Sbjct: 13 NERTFIINGLKSTPCIRTDGREMMQQRKISIQFRRNSSQSQASLCLGNTRVLANVHGEIV 72
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P+ DRP EG + + SPMA +FETGRPS ++EL +++DR +R+ RA DTE+L +L
Sbjct: 73 TPFPDRPTEGFFNTSVDLSPMASQNFETGRPSSLSIELAKMIDRSIRDCRAFDTEALAIL 132
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG+ VWAI ++H++D+ GNL DA IA++A+L+ FRRP+ SL + + E I + E +
Sbjct: 133 AGEKVWAIYCEVHVIDHDGNLTDAVQIASIAALMHFRRPDLSLELQKENEDIKN-FEAYD 191
Query: 190 PLPLIIHHLPIAVTFGFF-----------SSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
+PL +HH+P++V+F + SS L +DPT EE VM G +T N+ +
Sbjct: 192 TIPLSLHHIPLSVSFSYMLTRDNMDKNDGSSSPLFFMDPTSREEQVMNGVITFIFNSFRE 251
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
+CA+ K GG + I++C ++A+ ++ +K
Sbjct: 252 LCAVHKNGGAPISTEDILRCAQIAAARVGELVSVLK 287
>gi|50290581|ref|XP_447723.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527034|emb|CAG60670.1| unnamed protein product [Candida glabrata]
Length = 303
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 16/282 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E FI AL R+DGR ++R + I+FG+E G V++G+T + +
Sbjct: 1 MAKDIEISTSEATFIVEALRQKQRLDGRRLDQFRDVQIEFGKEYGDVTVRMGKTLVQCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ +PY DRP EG I TE SPMA P FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQITEPYEDRPFEGLFVISTEISPMAGPQFENGNSTGEDEVLCARIIEKAVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H L+ G +DA+ IA +A+L FR+P+ S+ GED V+V+
Sbjct: 121 EGLCIVAGSKCWAVRADVHYLNCDGGFIDASCIAVMAALSHFRKPDISVHGED---VVVY 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P +EREP+PL I H+PI VTF FF S+ + +ID T EE + G +T
Sbjct: 178 PVDEREPVPLGILHIPICVTFSFFNPQDTEENIKGDSNAEISIIDATTKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
TLN N +V + K GG + +MQC A + +T I
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALQLMQCCHKAYEITEQLTDMI 279
>gi|221221406|gb|ACM09364.1| Exosome complex exonuclease RRP45 [Salmo salar]
Length = 231
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 154/235 (65%), Gaps = 9/235 (3%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N E+ F+ A+ R+DGR ++YR + I FG + G V LG+T IM
Sbjct: 3 DTPLSNC------ERDFLLKAIEEKKRLDGRQTYDYRSIKISFGTDYGCCFVDLGKTRIM 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V+ +L+ P +RPNEG + E SPMA P+FE GR SE V+L R ++R LR S+ +
Sbjct: 57 AQVSCELITPKENRPNEGIMFFNIELSPMASPAFEMGRQSELLVKLNRQLERCLRNSKCI 116
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
DTESLCV++G+ VW IR+D+ +L++ GNL+DAA+IAA+A+L FRRP+ + GE EV
Sbjct: 117 DTESLCVVSGEKVWQIRVDVRLLNHDGNLMDAASIAAIAALCHFRRPDVGIQGE---EVT 173
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
V+ EER+P+PL I+H+PI V+F FF + L++DP EE VM G + +N N
Sbjct: 174 VYSTEERDPIPLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNIN 228
>gi|389739495|gb|EIM80688.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 286
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 160/268 (59%), Gaps = 8/268 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ AL +R+DGR E R + FG E G E G+T ++ V ++++P
Sbjct: 7 SLPEKEFLIHALEQNLRLDGRAALEMRLPELIFGDELGCVECVFGKTRVLAQVDAKMIRP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG + I +E SPMA +E GRPS+ V L R++D+ LR S AVD E LC+LAG
Sbjct: 67 TPERPYEGQILIHSEISPMASSEYEPGRPSDEEVALSRMLDKVLRRSDAVDKEGLCILAG 126
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW +RI +H L + GNL+D A +A +A+L FRRPE + G+ EV VHPP R P+
Sbjct: 127 QRVWQLRITIHCLADAGNLLDCACLAGIAALKHFRRPEVEVVGD---EVTVHPPSSRAPV 183
Query: 192 PLIIHHLPIAVTFGFFSSES-----LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
PL +HH P +TF +F S S ++DP+H E+ + G ++ LNA ++C + K G
Sbjct: 184 PLSLHHTPFCITFAYFPSPSHPHTPTCLLDPSHLEQRLSTGTLSLALNAQRELCVVHKAG 243
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIK 274
G + +++ + +A A ++ K ++
Sbjct: 244 GLPLAPEEVLRAVEVAVGKARELEKFLE 271
>gi|365766354|gb|EHN07852.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 305
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 162/282 (57%), Gaps = 16/282 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVXGE---QIIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P EREP+PL I H+PI VTF FF ++ + +ID T EE + G +T
Sbjct: 178 PVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
TLN N +V + K GG + +M+C A + IT +I
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>gi|452985011|gb|EME84768.1| hypothetical protein MYCFIDRAFT_163550 [Pseudocercospora fijiensis
CIRAD86]
Length = 304
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 166/265 (62%), Gaps = 3/265 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
NE+ F+ +AL IR+DGR ++R + + FG E G+++V++G+T ++ ++ +VQPY
Sbjct: 10 NEREFLLSALRENIRLDGRAFDQFRNIDLAFGEEYGTADVRIGKTRVLAKISATVVQPYE 69
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
DR +G +I TE SP+A P+FE GR ++ V L RI+++ +R S A+DTESLC++AG+
Sbjct: 70 DRKFDGVFTISTELSPIASPAFEVGRQDQTEVLLSRILEKTIRRSGALDTESLCIVAGQK 129
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
W +R D+HILD+ GNLVDAA A +A+++ FRRP+ + GED V V EREP+ L
Sbjct: 130 CWHVRADIHILDHDGNLVDAACAALVAAIMHFRRPDVEVHGED---VTVFGLREREPVKL 186
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ H P VTF ++ + +++ D T EE G++ ++N G+VC I K GG V
Sbjct: 187 QMQHQPFCVTFSYYDAGEIMLQDATLLEEQCREGEVVVSINRFGEVCQIAKYGGTPVDGL 246
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
++ C A A + K +K +E
Sbjct: 247 SVLTCTNQALEKAKMLDKLVKQKLE 271
>gi|350402638|ref|XP_003486552.1| PREDICTED: exosome complex component RRP45-like [Bombus impatiens]
Length = 410
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 171/284 (60%), Gaps = 7/284 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT EK F+ ++ G R+DGR FE R I F GS V LGQT ++ VT + Q
Sbjct: 6 LTNCEKNFVNKSVEQGTRLDGRCLFEARPAKIYFASNWGSCMVLLGQTRVIAQVTCDIQQ 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG L I E +PMA F+ GR SE +V + R +++ ++S+ +D ESLC++A
Sbjct: 66 PKTSRPNEGMLHINVELNPMAAQHFDGGRQSEISVLISRQLEKCYQDSKCIDLESLCIIA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW +R+D++++++ GNL+D A+IA LA+L F RP+ + GED +IVHP E++P
Sbjct: 126 DKQVWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPDVTSNGED---IIVHPFSEKDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ--KPGGE 248
LPL ++H P+ V+F F S S V+DPT+ EE V V ++T +N+ ++C++
Sbjct: 183 LPLTLYHYPVCVSFITFESGS-TVMDPTYLEERVGVAQLTLGINSYRELCSLHFNYLTKT 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRH 292
++ VI A+ A + ++IK+AV Y+ E +K R+
Sbjct: 242 MTVEDVISAVSNYATNYAVQLVQQIKEAV-NYDVETRYKKDNRN 284
>gi|353237792|emb|CCA69757.1| probable RRP45-Exosome complex exonuclease [Piriformospora indica
DSM 11827]
Length = 313
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 167/294 (56%), Gaps = 34/294 (11%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ AL +R+DGR+ R+ + FG E G E +G+T ++ V ++V+P
Sbjct: 8 SIPEKEFLVAALQQSLRLDGRSLVALREPLLSFGPELGWVECAMGKTRVLASVEAKMVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
DRP EGT++I +EFSPMA +E GR S+ V + R++D+ LR S A+D ESLCV+AG
Sbjct: 68 TPDRPYEGTINIHSEFSPMASSEYEQGRTSDEEVTITRMLDKVLRRSDALDKESLCVVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW++++ + L + GN++D A +A + +L FR+PE + GE EVIVH P+ R PL
Sbjct: 128 QRVWSLKLTVQFLSDAGNMLDCACLAGIVALRHFRKPEVEIDGE---EVIVHSPDSRAPL 184
Query: 192 PLIIHHLPIAVTFGFFSSESLLV-------------------------------IDPTHH 220
PL IHH PI TF +S + L V +DP
Sbjct: 185 PLAIHHTPICFTFALYSYQKLSVTKSKGTSSTTEQQSISTVPSGSFSTHQTFALLDPILL 244
Query: 221 EEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
EE + G ++ LNA G++C +QK GG + QS I++ + +A A +I + I+
Sbjct: 245 EETLAHGTLSIALNAQGELCVLQKNGGVPLDQSEILRLINIAVERAKEIDQLIE 298
>gi|6320486|ref|NP_010566.1| Rrp45p [Saccharomyces cerevisiae S288c]
gi|14285753|sp|Q05636.1|RRP45_YEAST RecName: Full=Exosome complex component RRP45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|266618484|pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease
gi|1230649|gb|AAB64446.1| Ydr280wp [Saccharomyces cerevisiae]
gi|45269387|gb|AAS56074.1| YDR280W [Saccharomyces cerevisiae]
gi|151942253|gb|EDN60609.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190404776|gb|EDV08043.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|256270394|gb|EEU05592.1| Rrp45p [Saccharomyces cerevisiae JAY291]
gi|259145518|emb|CAY78782.1| Rrp45p [Saccharomyces cerevisiae EC1118]
gi|285811296|tpg|DAA12120.1| TPA: Rrp45p [Saccharomyces cerevisiae S288c]
gi|323309622|gb|EGA62830.1| Rrp45p [Saccharomyces cerevisiae FostersO]
gi|323349166|gb|EGA83396.1| Rrp45p [Saccharomyces cerevisiae Lalvin QA23]
gi|349577332|dbj|GAA22501.1| K7_Rrp45p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300393|gb|EIW11484.1| Rrp45p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 305
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 162/282 (57%), Gaps = 16/282 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P EREP+PL I H+PI VTF FF ++ + +ID T EE + G +T
Sbjct: 178 PVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
TLN N +V + K GG + +M+C A + IT +I
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>gi|392587997|gb|EIW77330.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 303
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 169/279 (60%), Gaps = 19/279 (6%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F++ AL +R+DGR P + R +S FG E G + LG+T ++ V ++V+P
Sbjct: 13 SIAEKDFLQDALRKKLRLDGRKPMDLRPISFSFGPELGWVDCSLGKTRVLAQVDAKMVKP 72
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E SPMA P ++T RPSE + + R++D+ ++ S A+D ESLCVLAG
Sbjct: 73 LPERPYEGLITIHSEISPMAGPEYDTARPSEEEIGISRMLDKIVKRSDALDKESLCVLAG 132
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW +R+ +H + + GN++D A +A++ +L FRRPE + G+ EVI+H P ER P+
Sbjct: 133 QRVWHLRLTVHFISDAGNMLDCAVLASMVALRHFRRPEVEVIGD---EVIIHSPSERAPV 189
Query: 192 PLIIHHLPIAVTFGFFSSES----------------LLVIDPTHHEEAVMVGKMTATLNA 235
PL +HH+P+ +TF FF S +++ DP EE + G ++ LN
Sbjct: 190 PLALHHIPLCLTFAFFPPPSNPTSKNNEVQEETPPPIVLADPNTLEERLADGTLSVALNV 249
Query: 236 NGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
++C + K GG + + +M+ ++ A+ + ++ + ++
Sbjct: 250 QRELCVLHKAGGLPLEPAEVMKVVQRATFLVKELDELVE 288
>gi|366996108|ref|XP_003677817.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
gi|342303687|emb|CCC71468.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
Length = 303
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 164/287 (57%), Gaps = 16/287 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +F+ AL R+DGR ++R + + FG E G V++G T + +
Sbjct: 1 MAKDIEISNSESKFLLEALRQNYRLDGRLFDQFRDVEVTFGNEYGDVTVKMGDTRVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA P FE G + E + RI+++ +R S A+D
Sbjct: 61 SCQISQPYEDRPFEGLFLISTENSPMAGPQFENGNNTDEDEILCARIIEKAVRRSGALDI 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H L+ G +DA+ IA +A L+ F++P+ ++ GE +VI+H
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMAGLIHFKKPDITVHGE---QVIIH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P EEREP PL I H+PI VTF FF S+E + VID T EE + G +T
Sbjct: 178 PIEEREPTPLGILHIPICVTFSFFNPKETEENIKGESNEEITVIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
TLN N +V + K GG + +M C A + +T +I AV+
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALSLMSCCHKAYSITEKVTDQIVQAVK 284
>gi|367002015|ref|XP_003685742.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
gi|357524041|emb|CCE63308.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
Length = 303
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 162/278 (58%), Gaps = 20/278 (7%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
V E +FI AL R+DGR+ ++R + I FG+E G + V LG+T + V+ + QPY
Sbjct: 9 VAESKFILDALKENQRLDGRSFDKFRDVDISFGKEYGDATVTLGKTKVQCRVSCSITQPY 68
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDTESLCVLAG 131
DRP EG I TE SPMA P FE G + + V RI+++ +R S A+D E LC++AG
Sbjct: 69 EDRPFEGLFIISTEMSPMAGPQFENGSNTGDDEVLCSRIIEKAIRRSGALDVEGLCIVAG 128
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
WAIR D+H+LD G ++DA+ +A + +LL FR+P+ S+ GE +V VHP EREP+
Sbjct: 129 SKCWAIRADVHVLDCDGGIIDASCLAVICALLHFRKPDVSILGE---QVTVHPINEREPV 185
Query: 192 PLIIHHLPIAVTFGFFSSES------------LLVIDPTHHEEAVMVGKMTATLNANGDV 239
L I H+PI VTF FF+ + + +ID T EE++ G +T TLN N +V
Sbjct: 186 ALGILHIPICVTFSFFNPQDVEENIKGAGNNEIAIIDATLKEESLRDGVLTVTLNKNREV 245
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ K GG + +M C A DIT++I D +
Sbjct: 246 VQVSKAGGLPMDALSLMDC----CHKAYDITERITDQI 279
>gi|342320414|gb|EGU12354.1| Hypothetical Protein RTG_01376 [Rhodotorula glutinis ATCC 204091]
Length = 1080
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 168/289 (58%), Gaps = 26/289 (8%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NE F+ T L G+R+DGR +E R + ++FG E G E +LG T ++ V+ ++V+P
Sbjct: 8 SLNESTFVHTCLRKGLRLDGRGMYEMRAVEVRFGEEFGWVECRLGGTRVVAQVSAEIVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETG-----------------------RPSESAVELG 108
DRP EG +++ TE SPMA ++E G R SE V +
Sbjct: 68 LPDRPYEGFVNLVTEISPMASAAYEAGRLRGGACACDGVSKRELTSTTARRASEDEVLMT 127
Query: 109 RIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
R++++ LR S VD E+LC++AG+ VW+IR+D+H LD+ GNL+D A+IAA+ +L FR+P
Sbjct: 128 RLLEKALRRSNTVDREALCIVAGQKVWSIRVDVHFLDDEGNLLDCASIAAMTALRHFRKP 187
Query: 169 ECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGK 228
+ + EV VH ER P+PL IHH P+ +TF FF +SL V+DP+H E + G
Sbjct: 188 DVT---VVGEEVTVHSMTERVPVPLAIHHSPMCLTFAFFGDDSLAVLDPSHLESQLCTGT 244
Query: 229 MTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
+T LN+ ++C + K GG + +++ + + ++ ++ A+
Sbjct: 245 LTLALNSQSEICVLSKQGGAPLGADEVIRAVSIGVERVREVEGRVVQAL 293
>gi|448262633|pdb|4IFD|A Chain A, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 304
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 161/281 (57%), Gaps = 16/281 (5%)
Query: 6 ANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVT 65
A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + ++
Sbjct: 1 AKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRIS 60
Query: 66 GQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDTE 124
Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D E
Sbjct: 61 CQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVHP
Sbjct: 121 GLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVHP 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTAT 232
EREP+PL I H+PI VTF FF ++ + +ID T EE + G +T T
Sbjct: 178 VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVT 237
Query: 233 LNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
LN N +V + K GG + +M+C A + IT +I
Sbjct: 238 LNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 278
>gi|190345706|gb|EDK37633.2| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 172/296 (58%), Gaps = 16/296 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG-REDGSSEVQLGQTHIMGF 63
+A +++N++R++ AL G+R DGR E R I E G E++ G T +
Sbjct: 8 MAKGTEISLNQERYVLEALKHGVRGDGRRIDEIRDPKIILSPSEYGYVEIEWGNTKLAVR 67
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
V+ ++ +PY DRP EG +I TE SPMA P FE G+ S+ V + RIV++ +R S A+D
Sbjct: 68 VSAEIAKPYDDRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAIRRSNALDL 127
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
ESLC++AG VWA+R D++ LD G L+DA + + +L FR+P+ S+ GE ++VH
Sbjct: 128 ESLCIVAGSKVWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGE---SIVVH 184
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
+ER+P+ L I H+P+ V+F FF +S+ + V+D TH EE V G +
Sbjct: 185 SMDERQPVALSILHVPLCVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVV 244
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALR 287
TLN N ++ + K GG + V+M R A + S++T ++K+ ++ + ER R
Sbjct: 245 TLNKNREILQVSKSGGLPIDAVVLMDLCRKAYTVTSELTDRVKEILKKDDAERYKR 300
>gi|45184700|ref|NP_982418.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|44980046|gb|AAS50242.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|374105616|gb|AEY94527.1| FAAL124Wp [Ashbya gossypii FDAG1]
Length = 305
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 168/299 (56%), Gaps = 20/299 (6%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E FI AL +R+DGR ++R + I+ G E G + +G+T I +
Sbjct: 1 MAKAIEISTSESAFILEALRQNLRLDGRTFDQFRDVEIELGSEYGDVTITMGKTKIHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V + R++++ +R S A+D
Sbjct: 61 SAQIAQPYEDRPFEGLFVISTEMSPMAGAQFENGNNTGEDEVLISRMIEKAVRRSSAMDL 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WAIR D+H LD G +DA+ IA + LL FR+P+ S+ GE +VIVH
Sbjct: 121 EGLCIIAGSKCWAIRADVHFLDCDGGFIDASCIAVMTGLLHFRKPDVSVQGE---QVIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P +EREP+ L I H+P+ VTF F+ S++ + +ID T EE + G +T
Sbjct: 178 PVDEREPVALGILHIPVCVTFSFYNPEDAEVNVKGDSADEIAIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
TLN N +V + K GG + +M C A IT+KI D + + AL++ K
Sbjct: 238 TLNKNREVVQLSKAGGLPMDALSLMNC----CHKAYTITEKITDQILAALKQDALQRDK 292
>gi|390595104|gb|EIN04511.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 290
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 163/273 (59%), Gaps = 10/273 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ E+ F+ AL R+DGR + RK I F E G EV LG+T +M + +LV+P
Sbjct: 7 SIPEREFLLNALRQSRRLDGRRLLDMRKPIITFNEEMGYVEVALGKTKVMAHIESRLVRP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG +SI +E SPMA +E GRPSE V + R++D+ +R S VD ESLC+LAG
Sbjct: 67 PPERPYEGIISIHSEVSPMASSEYEAGRPSEEEVTITRMLDKVIRRSDTVDKESLCILAG 126
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
++VW +R+ LH L + GN++D A +A++ +L FRRPE +V++H P+ER P+
Sbjct: 127 QVVWHLRLTLHFLADAGNVLDCACLASIVALRHFRRPE---VEVVGEDVVLHQPDERAPV 183
Query: 192 PLIIHHLPIAVTFGFFS-------SESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
PL +HH P TF FF E + V+DP+ E+ + G M+ LNA ++C +QK
Sbjct: 184 PLAMHHTPFCFTFAFFHPPSSSTVDEIITVLDPSLLEQTLCGGTMSVALNAQRELCVVQK 243
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
GG + Q I+ + LA + A + + ++D +
Sbjct: 244 AGGVPLAQHEILHVVNLAVQQAKLMERFVEDTL 276
>gi|302903929|ref|XP_003048964.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729898|gb|EEU43251.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 293
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 176/280 (62%), Gaps = 8/280 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ AL G+R+DGR ++R L + FG E G +EV+ G+T ++ VT ++ P
Sbjct: 8 SLPEKTFLIQALDEGLRLDGRKFDQFRPLELTFGDEYGVAEVKYGKTRVLAKVTAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I +E SPM PS+E RPS V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YSDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTVRRSGALDTESLCLIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W+IR+DLH+L + GNL DAA +A +A+L FR+P+ S+ GE+ + V+ P EREP+
Sbjct: 128 QKCWSIRVDLHVLTHDGNLTDAACLAVVAALRHFRKPDSSIEGEN---LTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VT+ FF E + +++D EE + V T +LN +G++C I K GG +
Sbjct: 185 PLSWLHSPFCVTYSFFGEEGNQVLVDANWLEEQLRVAYCTYSLNKHGEICQIAKLGGTSL 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
+ +QC ++ A + +K++ D V+ E A R+ K
Sbjct: 245 DAPLFIQC----AQGALNRSKELSDLVDRKLAEDAKRRDK 280
>gi|336258954|ref|XP_003344283.1| hypothetical protein SMAC_06484 [Sordaria macrospora k-hell]
gi|380091844|emb|CCC10573.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 297
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 160/261 (61%), Gaps = 5/261 (1%)
Query: 12 TVNEKRFIETALSS-GIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+ NEK F+ AL IR+DGR +YR L + FG E G + V LG+T I+ + ++
Sbjct: 8 SANEKAFLLKALQDEQIRLDGREFDQYRPLELTFGDEYGVANVSLGKTKILAKASAEVTV 67
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I TE SPMA P FE RP+E+ V L R++++ +R S A+DTESLC++A
Sbjct: 68 PFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVA 127
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ W++R+D+H+L + GNL DAA A +A+L FR+P+ S+ ++ + V+ P EREP
Sbjct: 128 GQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSM---ENGVLTVYTPAEREP 184
Query: 191 LPLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+PL H P VT+ FF E ++D EE V V +T +LN +G++C I K GG
Sbjct: 185 VPLGWLHSPFCVTWSFFGDEGETALLDADWMEEQVRVASLTISLNRHGEICQIAKLGGVP 244
Query: 250 VLQSVIMQCLRLASRMASDIT 270
V ++QC +A D +
Sbjct: 245 VEAVALLQCTSVALTKVKDFS 265
>gi|336469878|gb|EGO58040.1| hypothetical protein NEUTE1DRAFT_82175 [Neurospora tetrasperma FGSC
2508]
gi|350290437|gb|EGZ71651.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 297
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 162/266 (60%), Gaps = 5/266 (1%)
Query: 12 TVNEKRFIETALSS-GIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+ NEK F+ AL IR+DGR +YR L + FG E G + V LG+T I+ + ++
Sbjct: 8 SANEKAFLLKALQDEQIRLDGREFDQYRPLELTFGDEYGVANVSLGKTKILAKASAEVTV 67
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I TE SPMA P FE RP+E+ V L R++++ +R S A+DTESLC++A
Sbjct: 68 PFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVA 127
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ W++R+D+H+L + GNL DAA A +A+L FR+P+ S+ ++ + V+ P EREP
Sbjct: 128 GQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSM---ENGVLTVYTPAEREP 184
Query: 191 LPLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+PL H P VT+ FF E ++D EE V V +T +LN +G++C I K GG
Sbjct: 185 VPLGWLHSPFCVTWSFFGDEGETALLDADWMEEQVRVASVTISLNRHGEICQIAKLGGVP 244
Query: 250 VLQSVIMQCLRLASRMASDITKKIKD 275
V ++QC +A + + + D
Sbjct: 245 VEAVALLQCTSVALTKVKEFSTYLDD 270
>gi|156551918|ref|XP_001607202.1| PREDICTED: exosome complex component RRP45-like [Nasonia
vitripennis]
Length = 412
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 168/280 (60%), Gaps = 11/280 (3%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++ EK F+ A+ + RIDGR E R L I FG G V LGQT V+ + Q
Sbjct: 6 ISICEKNFVNKAIQTDTRIDGRTLLEPRPLKINFGTNWGCCVVSLGQTRAAAQVSCDIQQ 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG L + E +P+A FE+GR SE+A + R +++ L+ESR VD ESLC++A
Sbjct: 66 PKASRPNEGMLHVNVELNPLAAQHFESGRQSEAAALINRQLEKSLKESRCVDLESLCIVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW IR+D+ I+++ GNL+D A+IAALA+L+ F RP+ + GE EVI+HP E++P
Sbjct: 126 DKKVWNIRVDVSIINHDGNLIDCASIAALAALMHFHRPDVTSTGE---EVIIHPFTEKDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE-- 248
LPL ++H P+ ++F F + V+DP++ EE V +T +NA +VC++ E
Sbjct: 183 LPLTLYHHPVCISFITFENGK-TVVDPSYLEERVGAAILTLGINAYREVCSLYFDYIEYT 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET-----YNTE 283
++ VI A+ A ++ ++IK+ V+ YN E
Sbjct: 242 SLVADVIPSVSNFAANYAYELIREIKELVKQDVEAKYNKE 281
>gi|85087002|ref|XP_957805.1| hypothetical protein NCU00334 [Neurospora crassa OR74A]
gi|28918900|gb|EAA28569.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 297
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 162/266 (60%), Gaps = 5/266 (1%)
Query: 12 TVNEKRFIETALSS-GIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+ NEK F+ AL IR+DGR +YR L + FG E G + V LG+T I+ + ++
Sbjct: 8 SANEKAFLLKALQDEQIRLDGREFDQYRPLELTFGDEYGVANVSLGKTKILAKASAEVTV 67
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I TE SPMA P FE RP+E+ V L R++++ +R S A+DTESLC++A
Sbjct: 68 PFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVA 127
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ W++R+D+H+L + GNL DAA A +A+L FR+P+ S+ ++ + V+ P EREP
Sbjct: 128 GQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPDTSM---ENGVLTVYTPAEREP 184
Query: 191 LPLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+PL H P VT+ FF E ++D EE V V +T +LN +G++C I K GG
Sbjct: 185 VPLGWLHSPFCVTWSFFGEEGETALLDADWMEEQVRVASVTISLNRHGEICQIAKLGGVP 244
Query: 250 VLQSVIMQCLRLASRMASDITKKIKD 275
V ++QC +A + + + D
Sbjct: 245 VEAVALLQCTSVALTKVKEFSTYLDD 270
>gi|254586253|ref|XP_002498694.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
gi|238941588|emb|CAR29761.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
Length = 306
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 168/293 (57%), Gaps = 16/293 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A + +E +FI AL +R+DGR+ ++R + IKFG+E G V +G+T I +
Sbjct: 1 MAKDIEFSTSENKFILDALRQNLRLDGRSFDQFRDVDIKFGKEYGDVTVTMGKTKIHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA P FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFLISTETSPMAGPQFENGNSTGEDEVLCVRIIEKAVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WAIR D+H LD G L+DA+ IA + +LL F++P+ ++ G+ V VH
Sbjct: 121 EGLCIVAGSKCWAIRADVHFLDCDGGLLDASCIAVMTALLHFKKPDITVLGD---RVTVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P +EREP+PL I H+PI VTF FF S+ + +ID EE + G +T
Sbjct: 178 PTDEREPVPLGILHIPICVTFSFFNPQDTEENIKGDSNAEIAIIDANLKEELLRDGTLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
TLN N +V + K GG + +M+ A + +T +I V+ +++R
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALSLMENCYKAYTITEKLTDQILACVKEDDSKR 290
>gi|146420206|ref|XP_001486060.1| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 171/296 (57%), Gaps = 16/296 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG-REDGSSEVQLGQTHIMGF 63
+A +++N++R++ AL G+R DGR E R I E G E++ G T +
Sbjct: 8 MAKGTEISLNQERYVLEALKHGVRGDGRRIDEIRDPKIILSPSEYGYVEIEWGNTKLAVR 67
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
V ++ +PY DRP EG +I TE SPMA P FE G+ S+ V + RIV++ +R S A+D
Sbjct: 68 VLAEIAKPYDDRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAIRRSNALDL 127
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
ESLC++AG VWA+R D++ LD G L+DA + + +L FR+P+ S+ GE ++VH
Sbjct: 128 ESLCIVAGSKVWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDVSIDGE---SIVVH 184
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
+ER+P+ L I H+P+ V+F FF +S+ + V+D TH EE V G +
Sbjct: 185 SMDERQPVALSILHVPLCVSFSFFNPSDIEETVKGDASDEIAVMDATHEEELVRDGSLVV 244
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALR 287
TLN N ++ + K GG + V+M R A + S++T ++K+ ++ + ER R
Sbjct: 245 TLNKNREILQVSKSGGLPIDAVVLMDLCRKAYTVTSELTDRVKEILKKDDAERYKR 300
>gi|383858184|ref|XP_003704582.1| PREDICTED: exosome complex component RRP45-like [Megachile
rotundata]
Length = 410
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 172/284 (60%), Gaps = 7/284 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT E+ F+ A+ G R+DGRN E R + I FG GS V LGQT + VT + Q
Sbjct: 6 LTNCERNFVNKAVEQGTRLDGRNLLEARPVKIYFGSNWGSCMVLLGQTRAVAQVTCDIQQ 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG L I E + M +F+ G+ +E +V + R +++ ++S+ +D ESLC++A
Sbjct: 66 PKTSRPNEGMLHINVELNAMVTQNFDAGKQAEVSVLISRQLEKCFKDSKCIDLESLCIIA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW +R+D++I+++ GNL+D A+IA LA+L F RP+ + GE E+I+HP E++P
Sbjct: 126 DKKVWNLRVDINIINHDGNLIDCASIATLAALSHFHRPDVTSTGE---EIIIHPFCEKDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ--KPGGE 248
LPL I+H P+ V+F F S + V+DPT+ EE V V ++T +N+ ++C++
Sbjct: 183 LPLTIYHYPVCVSFITFESGN-TVMDPTYMEERVGVAQLTLGINSYRELCSLHFNYLTKT 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRH 292
+Q VI A+ A+++ ++IK+ V Y+ E +K R+
Sbjct: 242 MTIQDVISAVSSYAANYATELVQQIKEEV-AYDVEARYKKDDRN 284
>gi|367014585|ref|XP_003681792.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
gi|359749453|emb|CCE92581.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
Length = 305
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 167/293 (56%), Gaps = 16/293 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FGRE G V++G T + +
Sbjct: 1 MAKDIEISTSEAQFILEALKQNGRLDGRSFDQFRDVEISFGREYGDVTVKMGNTKVQCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA P FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFLISTESSPMAGPQFENGNNTGEDEVLCARIIEKAVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ +A + +LL F++P+ S+ G+ V VH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCVAVMTALLHFKKPDISVLGD---RVTVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P +EREP+ L I H+PI VTF FF S+ + +ID T EE + G +T
Sbjct: 178 PVDEREPVSLGILHIPICVTFSFFNPQDTEENIKGDSNSEIAIIDATLKEELLRDGTLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
TLN N +V + K GG + +M+ A + +T++I D ++ + ER
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALSLMENCHKAYTITERLTEQILDVIKKDDAER 290
>gi|323338208|gb|EGA79441.1| Rrp45p [Saccharomyces cerevisiae Vin13]
Length = 305
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 161/282 (57%), Gaps = 16/282 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+ G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKXFGDVSVKMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P EREP+PL I H+PI VTF FF ++ + +ID T EE + G +T
Sbjct: 178 PVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
TLN N +V + K GG + +M+C A + IT +I
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>gi|365761400|gb|EHN03058.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401838753|gb|EJT42221.1| RRP45-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 305
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 162/282 (57%), Gaps = 16/282 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQHYRLDGRSFDQFRDVKITFGKEFGDVSVEMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA + L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVITGLMHFKKPDITVHGE---QIIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P EREP+PL I H+PI VTF FF ++ + +ID T EE + G +T
Sbjct: 178 PINEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
TLN N +V + K GG + ++M+C A + IT +I
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALMLMRCCHEAYAIIEKITDQI 279
>gi|403214419|emb|CCK68920.1| hypothetical protein KNAG_0B04860 [Kazachstania naganishii CBS
8797]
Length = 307
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 167/293 (56%), Gaps = 16/293 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E+ FI +L + R+DGRN E+R +SI FG E G V LG T + +
Sbjct: 1 MAKDIVISNSEREFILESLRAKQRLDGRNFDEFRDVSIVFGNEYGDVLVSLGGTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ ++ PY DRP EG I TEF+PMA FE G + E V + RI+++ +R S A+D
Sbjct: 61 SCEVTLPYEDRPFEGLFLISTEFTPMAGGQFENGNSTGEDEVLIARIIEKAVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WAIR D+H LD G +DA+ IA +A+L+ F++P+ ++ G V+VH
Sbjct: 121 EGLCIVAGSKCWAIRADVHFLDCDGGFIDASCIAVMAALMHFKKPDITVQGH---SVVVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSES------------LLVIDPTHHEEAVMVGKMTA 231
P EEREP+PL I H+PI VTF FF+ + ++V D T EE + G +T
Sbjct: 178 PVEEREPVPLGILHVPICVTFSFFNPQDSETNFKGQDNLEIVVTDATLKEELLREGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
TLN N +V + K GG + +M C A + +T +I A++ +R
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALTLMDCCHKAYEITDKVTSQIIAAIKQDYAQR 290
>gi|402217991|gb|EJT98069.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 299
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 174/292 (59%), Gaps = 20/292 (6%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++N++ FI +A+ G+R+DGR+P + RK +I+FG G E +G+T ++ ++ + +P
Sbjct: 8 SINQRDFIFSAIQQGLRVDGRSPLQARKTTIRFGNSLGWVECSIGETRVVAQISATVTRP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA- 130
Y DRP EG + I TEFSPMA ++ETGRPSE + + RI+++ +R S A+D E+LC+LA
Sbjct: 68 YFDRPFEGIIVIHTEFSPMASSAYETGRPSEEEITMARILEKTIRRSEALDREALCILAG 127
Query: 131 ----------------GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174
G+ VW +R+ + L + GNL+D A +AA+A+L FR+PE + G
Sbjct: 128 QKVSVPHRETNTKIVRGQQVWTLRLTIQFLADEGNLLDCACMAAMAALRHFRKPEVEVVG 187
Query: 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
+ E + PEER P+PL +HH P+ V+F + V+DP+ EE + GKMT +LN
Sbjct: 188 D---EATMFSPEERAPVPLALHHQPLCVSFVSLGPRNTPVMDPSRLEEQLAHGKMTISLN 244
Query: 235 ANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
A ++C +QK GG + ++ + +A D++ + ++E + R +
Sbjct: 245 AQKEICVLQKAGGVALPADEVLHAVNVAVSRVRDMSDLLNRSLEEDSRTRVI 296
>gi|396479694|ref|XP_003840816.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
gi|312217389|emb|CBX97337.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
Length = 291
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 168/268 (62%), Gaps = 4/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++NE+ FI+ AL IR+D R +R + + FG E G ++VQLG+T ++ ++ +
Sbjct: 7 ISLNEREFIKQALREQIRLDKRAFDAFRPVELTFGDEYGVADVQLGKTRVIARISVDVTT 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R +G I +EFSPMA P+FE GRP+++ V L RI+++ +R S A+DTESLC++A
Sbjct: 67 PLPERKFDGIFQIVSEFSPMASPAFEIGRPTDAEVILSRILEKAIRRSNALDTESLCIIA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +A+R D+H++D+ G L+DA+ IA +A+L FRRP+ + GE + V ER+P
Sbjct: 127 GLKCFALRADVHVIDHDGGLIDASCIAVMAALQHFRRPDVVVEGE---KATVLSVRERDP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P+ VTF +F E LV D EE V G++ T+N +G++C I K GG +
Sbjct: 184 IPLSILHQPLCVTFSYFEDEIFLV-DANLAEERVRQGEVILTMNKHGELCQIAKYGGATI 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++ C +A + ++++ I+ +E
Sbjct: 243 NPLALLNCTSIALQKVAELSALIQKRLE 270
>gi|453085196|gb|EMF13239.1| exoribonuclease [Mycosphaerella populorum SO2202]
Length = 299
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 165/265 (62%), Gaps = 3/265 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
NE+ FI +ALS IRIDGR ++R + + FG G ++V++G+T ++ ++ ++V PY
Sbjct: 10 NERDFILSALSQNIRIDGRQFDQFRPIDLAFGDNYGQADVRIGKTRVLVNISAEVVVPYV 69
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
DR +G +I TE SP+A P+FE GR ++ + L RI+++ +R S A+DTESLC++AG+
Sbjct: 70 DRKFDGVFTISTELSPIASPAFEVGRQDQTEIILSRILEKTIRRSGALDTESLCIVAGQK 129
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
+ IR D+H+LD+ GNLVDA+ +A +A+L+ FRRP+ + GE EV V EREP+ L
Sbjct: 130 CFHIRADIHVLDHDGNLVDASCLALVAALMHFRRPDVEVHGE---EVTVFSVREREPVRL 186
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ H P VT ++ +++ D T EE V G++ ++N G+VC I K GG V
Sbjct: 187 SMQHQPFCVTMSYYEGGEIVLQDATLLEEHVREGEIVISINRFGEVCQIAKYGGTPVDGM 246
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
++ C A A + K +K +E
Sbjct: 247 SMLSCTNAALEKAKMLDKLVKAKLE 271
>gi|340728541|ref|XP_003402580.1| PREDICTED: exosome complex component RRP45-like [Bombus terrestris]
Length = 410
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 164/269 (60%), Gaps = 6/269 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT EK FI ++ G R+DGR FE R I F GS V LGQT ++ VT + Q
Sbjct: 6 LTNCEKNFINKSVEQGTRLDGRCLFEARPAKIYFASNWGSCMVLLGQTRVIAQVTCDIQQ 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG L I E +PMA F+ GR SE ++ + R +++ ++S+ +D ESLC++A
Sbjct: 66 PKTSRPNEGMLHINVELNPMAAQHFDGGRQSEISILISRQLEKCYQDSKCIDLESLCIIA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW +R+D++++++ GNL+D A+IA LA+L F RP+ + GED +IVHP E++P
Sbjct: 126 DKQVWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPDVTSNGED---IIVHPFSEKDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ--KPGGE 248
LPL ++H P+ V+F F S S V+DPT+ EE V V ++T +N+ ++C++
Sbjct: 183 LPLTLYHYPVCVSFITFESGS-TVMDPTYLEERVGVAQLTLGINSYRELCSLHFNYLTKT 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
++ VI A+ A + ++IK+AV
Sbjct: 242 MTVEDVISAVSNYAANYAVQLVQQIKEAV 270
>gi|170084377|ref|XP_001873412.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650964|gb|EDR15204.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 284
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 151/239 (63%), Gaps = 6/239 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ +AL +R+DGR P E R +I FG + G E LG+T ++ V ++V+P
Sbjct: 7 SIPEKEFLFSALKQSLRLDGRLPLEMRSPTITFGPDLGWVECGLGKTRVLAQVEAKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGR--PSESAVELGRIVDRGLRESRAVDTESLCVL 129
+RP EGT++I +E SPMA +E GR PS+ V + R++D+ L+ S AVD ESLC+L
Sbjct: 67 APERPFEGTITIHSEISPMASSEYEPGRGRPSDEEVAITRMLDKVLKRSDAVDKESLCIL 126
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG+ VW IR+ LH L + GN++D A +A + +L FRRP+ + G+ EVIVH P +R
Sbjct: 127 AGQRVWHIRLTLHFLADAGNMLDCACLAGITALRHFRRPDVEVVGD---EVIVHSPLDRA 183
Query: 190 PLPLIIHHLPIAVTFGFFSS-ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
P+PL IHH P TF FF + V+DP E+ + G ++ LNA ++C +QK GG
Sbjct: 184 PVPLAIHHTPFCFTFAFFPDITTPPVLDPNQLEQRLSAGLVSIALNAQKEICVLQKLGG 242
>gi|405123132|gb|AFR97897.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
grubii H99]
Length = 282
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 149/233 (63%), Gaps = 3/233 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+ F+ AL+ G R+DGR P + R + FG E G E +LG+T I+ V+ +V+P D
Sbjct: 11 QNEFLLAALAEGKRLDGRLPLQMRDVHYIFGDELGCVECRLGKTAILAQVSAAIVKPRDD 70
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP EG L I +E PMA +E GRP + V +GR++++ +R + A+D E+LC+LAG+ V
Sbjct: 71 RPYEGFLLINSEIGPMASSVYENGRPGDDEVMIGRLLEKSIRRTEAIDREALCILAGEKV 130
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+ LH L + GNL+D A +A +A+L FR+P+ + G++ +I H P+ER P+PL
Sbjct: 131 WQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKPDVEVIGDE--VIIQHSPDERAPVPLA 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
IHH P+ +TF +F + ++DP+H E + G +T TLNA ++C + K GG
Sbjct: 189 IHHTPLCLTFAYFENLP-PILDPSHVEVILCSGTLTLTLNAQREICVLSKAGG 240
>gi|328790286|ref|XP_624243.3| PREDICTED: exosome complex exonuclease RRP45-like [Apis mellifera]
Length = 414
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 164/265 (61%), Gaps = 6/265 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
EK F+ ++ GIR+DGR+ E R + I F GS V LGQT ++ VT + QP
Sbjct: 10 EKNFVNKSVEQGIRLDGRSLLEARPVKIYFASNWGSCMVLLGQTRVIAQVTCDIQQPKTS 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L I E +PMA F++GR SE ++ + R +++ ++S+ +D ESLC++A K V
Sbjct: 70 RPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+D++++++ GNL+D A+IA LA+L F RP+ + GED +IVHP E++PLPL
Sbjct: 130 WNLRVDINVINHDGNLIDCASIATLAALSHFHRPDVTSNGED---IIVHPFSEKDPLPLT 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ--KPGGEGVLQ 252
++H P+ V+F F S + V+DPT+ EE + V ++T +N+ ++C++ ++
Sbjct: 187 LYHYPVCVSFITFESGN-TVMDPTYLEERIGVAQLTLGINSYRELCSLHFNYLTKTMTVE 245
Query: 253 SVIMQCLRLASRMASDITKKIKDAV 277
VI A+ A + ++IK+ V
Sbjct: 246 DVISAVSSYATNYAVQLVQQIKETV 270
>gi|409041875|gb|EKM51360.1| hypothetical protein PHACADRAFT_129278 [Phanerochaete carnosa
HHB-10118-sp]
Length = 283
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 161/264 (60%), Gaps = 4/264 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F AL G+R+DGR P E R ++ FG + G E +G+T ++ V G++V+P
Sbjct: 8 SIPEKEFTYGALKQGLRLDGRLPLELRTPTLSFGPDLGWVECAMGKTRVLAQVDGKMVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E SPMA +E GRPS+ V + R++D+ LR S AVD ESLCV AG
Sbjct: 68 TPERPLEGIITINSEISPMASSEYEPGRPSDEEVTMTRMLDKVLRRSDAVDKESLCVQAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW +R+ +H L + GNL+D A +A + +L +RRPE + G+ EV +H P ER P+
Sbjct: 128 QRVWHLRLTIHCLADAGNLLDCACLAGIVALKHYRRPEVEVVGD---EVTIHHPSERAPV 184
Query: 192 PLIIHHLPIAVTFGFFSSESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L +HH P TF +F S V+DP+ E+ + G ++ LNA ++C +QK GG +
Sbjct: 185 SLSLHHTPYCFTFAYFPDTSTQAVLDPSLLEQRLSAGVLSIALNAQRELCVVQKAGGVPL 244
Query: 251 LQSVIMQCLRLASRMASDITKKIK 274
+++ + +A + A ++ ++
Sbjct: 245 APDEVLRIVDIAVQKAKELNTLVE 268
>gi|357618708|gb|EHJ71589.1| hypothetical protein KGM_20827 [Danaus plexippus]
Length = 371
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 169/282 (59%), Gaps = 13/282 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
EK FI+ +S G R+DGR E RKL I +G E GS V LG+T I+ V+ ++VQP +
Sbjct: 10 EKNFIQKIISEGHRLDGRIYNESRKLDISYGSEYGSCIVSLGETKILAQVSCEVVQPKQI 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L I E SPMA P FE R ++ V L R++++ ++S+ +D ESLC++ + V
Sbjct: 70 RPNEGILFINVEISPMAAPQFEANRQTDLTVYLNRLLEKCYKDSKCIDLESLCIVVEEKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W++R+D+ +L++ GNL++ A+IA LASL F+RP+ + G+ +I+H E++P+P +
Sbjct: 130 WSLRVDIKVLNHDGNLIECASIATLASLAHFKRPDVTRSGD---SIIIHTLSEKDPIPTV 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMV---------GKMTATLNANGDVCAIQKP 245
++H P+ VTF F++ ++LV DP+ EE+V G + +N ++C +
Sbjct: 187 LYHYPVCVTFAIFNN-NILVSDPSFIEESVCTSNSEEGSTGGLLVVGMNQYKELCVLNLS 245
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALR 287
G +V+ + + A+ +I +++K + T + R R
Sbjct: 246 GAAIYNSNVVHKAILNAAEKCKNIVEEVKSKIVTDDNFRQKR 287
>gi|196007548|ref|XP_002113640.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
gi|190584044|gb|EDV24114.1| hypothetical protein TRIADDRAFT_14906, partial [Trichoplax
adhaerens]
Length = 267
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/264 (40%), Positives = 166/264 (62%), Gaps = 4/264 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L ++++FI A+ SG R+D RN ++YR + ++FG E G++EV+LG + ++ T +L++
Sbjct: 3 LATSQRQFILNAIKSGQRLDSRNLYDYRPIKLQFGVEYGTAEVKLGASRVLAVTTCELIR 62
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP EG L E SPMA P + + + L R +++ ES A+D ESLCV+A
Sbjct: 63 PI-TRPEEGRLLFNVELSPMASPLNHSNDVIDRRIALERRLEQCFVESAAIDLESLCVIA 121
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+ +H+LD+ GN++D A+IAA+ASL FRRP+ ++ GED V +H E++
Sbjct: 122 GEKVWFIRVAIHVLDDVGNILDCASIAAIASLAHFRRPQVTVVGED---VTIHNRNEKDY 178
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+P+ +TF FF + IDPT EEAVM K+ LN + ++C IQ GG +
Sbjct: 179 IPLNIHHMPLCITFAFFHGNGCMAIDPTDQEEAVMESKLVMALNRHREICTIQFTGGVTL 238
Query: 251 LQSVIMQCLRLASRMASDITKKIK 274
++ C +A A++I K ++
Sbjct: 239 KVDQVLHCCNIALTKANEIIKLVQ 262
>gi|170109350|ref|XP_001885882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639153|gb|EDR03426.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 282
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 149/237 (62%), Gaps = 4/237 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ +AL +R+DGR E R +I FG + G E LG+T ++ V ++V+P
Sbjct: 7 SIPEKEFLFSALKQSLRLDGRLSLEMRLPTITFGPDFGWVECALGKTRVLAQVEAKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP +GT++I +E PMA +E GRPS+ V + R++D+ L+ S AVD ESLC+LAG
Sbjct: 67 APERPFQGTITIHSEILPMASSEYEPGRPSDEEVTITRMLDKVLKRSDAVDKESLCILAG 126
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW IR+ LH L + GN++D A +A + +L FRRP+ + G+ EVIVH P +R P+
Sbjct: 127 QRVWHIRLTLHFLADAGNMLDCACLAGITALQHFRRPDVEVVGD---EVIVHSPWDRAPV 183
Query: 192 PLIIHHLPIAVTFGFFSSESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL IHH P TF FF + V+DP E+ + G ++ LNA ++C +QK GG
Sbjct: 184 PLAIHHTPFCFTFAFFPDITTPPVLDPNQLEQRLSAGFVSIALNAQKEICVLQKLGG 240
>gi|444315341|ref|XP_004178328.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
gi|387511367|emb|CCH58809.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
Length = 305
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 164/287 (57%), Gaps = 16/287 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI L R+DGR E+RK+ IKFG E G V + +T + +
Sbjct: 1 MAKGIEISGSENKFILDCLKENYRLDGRKFDEFRKVDIKFGNEYGDVTVTMDKTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ L QPY DRP EG I TE SP+A FE G + + V RI+++ +R S A+D
Sbjct: 61 SCSLTQPYEDRPFEGLFVISTEISPIAGAQFENGNNTGDYEVLCSRILEKSIRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG W IR D+H LD G +DA+ IA +A+LL F++P+ S+ GE +VI+
Sbjct: 121 EGLCIVAGSKCWTIRADVHFLDCDGGFIDASCIAVMAALLHFKKPDISVHGE---QVIIL 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P +ER P+PL I H+PI VTF FF S++ + +ID T EE + G++T
Sbjct: 178 PVDERPPVPLGILHIPICVTFSFFNPQDSEQNIKGDSNDEIAIIDATLKEELLRDGELTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
TLN N ++ + K GG + +M C A + ++IT +I + ++
Sbjct: 238 TLNKNREIVQVNKAGGLPMDALQLMDCCHKAYTITTEITDQILECIK 284
>gi|254572173|ref|XP_002493196.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238032994|emb|CAY71017.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328352789|emb|CCA39187.1| exosome complex component RRP45 [Komagataella pastoris CBS 7435]
Length = 298
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 161/280 (57%), Gaps = 15/280 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE +F+ AL G+R+DGR P + R L+I+ G + G V LG ++ ++ ++V
Sbjct: 1 MSTNEHQFLLKALEEGLRLDGRKPMQMRPLNIEVGPDYGQMLVTLGDAKVVVRISSEIVT 60
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSF-ETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
PY DRP EG + +E M PSF E E V L R++++ +R S A+D ESLC++
Sbjct: 61 PYEDRPFEGIFQVSSELDGMGHPSFNEASHRQEEEVMLSRLIEKAIRRSNALDLESLCII 120
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG+ W++R D+HI+D GN+ D I +A LL F++P+ S+ VI+H ERE
Sbjct: 121 AGQKCWSVRADVHIIDYDGNMTDIVCIGVIAGLLHFKKPDISIRNG---TVILHDMSERE 177
Query: 190 PLPLIIHHLPIAVTFGFFSSESL-----------LVIDPTHHEEAVMVGKMTATLNANGD 238
P+PL + H+PI VTF +SS S+ +++D T EEA+ G +T TLN+N +
Sbjct: 178 PVPLSVLHIPICVTFQIYSSGSMEDNVKGDGREFVIVDATLKEEALTQGTITLTLNSNKE 237
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
+C + K GG + I+ A + D TK IKD ++
Sbjct: 238 LCQMSKSGGINLEVDEILSLTNEAQIIVDDFTKYIKDTIK 277
>gi|448085760|ref|XP_004195940.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359377362|emb|CCE85745.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 170/287 (59%), Gaps = 16/287 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK-FGREDGSSEVQLGQTHIMGFVTGQLV 69
L+ NE FI SG+R+DGR E R+ I+ E G E+ G+T + V+ ++V
Sbjct: 7 LSSNENNFIIEGFKSGLRLDGRKLDEIRQPVIRVLPDEYGYVEIDWGKTKLTVRVSAEVV 66
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P+ DRP EG +I TE SPMA P FE GR S+ + + R++++ +R S A+D E+LC++
Sbjct: 67 KPFEDRPFEGIFTINTEISPMASPQFEQGRVSDDEILMSRLIEKAIRRSNALDLEALCMV 126
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG VW IR D+++L+ G ++DAA+ + +L FR+P+ S+ G D VI+H +ERE
Sbjct: 127 AGAKVWYIRADVNVLEFDGGIIDAASFGVMVALQHFRKPDVSIHGSD---VIIHSLQERE 183
Query: 190 PLPLIIHHLPIAVTFGFFS------------SESLLVIDPTHHEEAVMVGKMTATLNANG 237
P+PL + H+PI VTF FF+ +E + +ID T EE++ G + T+N N
Sbjct: 184 PVPLSVLHVPICVTFSFFNPSDSEENIKGELNEEISIIDATEKEESLRDGSLVITINKNR 243
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
++ + K GG + V+M + A +A +++KIK ++ +ER
Sbjct: 244 EIVQLSKNGGLPIDVFVLMDLSKKAYTIAESLSEKIKAFLQKEESER 290
>gi|380479303|emb|CCF43100.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 298
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 163/267 (61%), Gaps = 4/267 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+ NEK F+ AL +R+DGR +YR+ + FG E G + V+LG+T I+ V+ ++ P
Sbjct: 8 SANEKAFVTQALKENLRLDGREFDQYREAQLTFGDEFGVANVELGKTRILVKVSAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP EG I +E SPMA P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YADRPFEGIFQITSELSPMASPAFEINRPTEAEVLLSRLLEKTIRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW++R D+H+L + GNL DAA +A +A+L FR+P+ S GE + + P EREP+
Sbjct: 128 QKVWSVRADVHVLSHDGNLTDAACLAVVAALRHFRKPDTSNEGES---LTIFTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL H P VTF FF E + ++D EE + T +LN +G++ I K GG V
Sbjct: 185 PLSWLHSPFCVTFSFFGDEGEITLVDANWIEEQLRTSSATVSLNKHGEISQISKLGGTPV 244
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
++ C +A + A D + + + +
Sbjct: 245 EAVTLLHCGNVALQKAKDFSTLVDEKL 271
>gi|300121304|emb|CBK21684.2| unnamed protein product [Blastocystis hominis]
Length = 273
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 163/266 (61%), Gaps = 6/266 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDG--SSEVQLGQTHIMGFVTGQLVQPY 72
E+ FI A GIR+DGRN E+R ++I R D SS V +G T + ++V Y
Sbjct: 8 ERDFIFNAAKEGIRVDGRNLTEFRDIAIDLSRTDSQSSSIVSIGDTKVCAITNCEIVSGY 67
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PNEG +I +PM + T + EL R+++R L+++ VD ESLC++ G+
Sbjct: 68 SDHPNEGLFTIHVNVTPMGGREYTTELSDDVRFELQRVLERSLKDNNTVDVESLCIIPGE 127
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
V+++ ++I+DN GN+ DAA +AA +SL FRRP+ S+ G +V ++ P E+EP+P
Sbjct: 128 KVFSVHCYVNIIDNNGNIFDAAVLAATSSLCYFRRPDYSINGT---QVRIYAPNEQEPVP 184
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L +H+ PI+++F SE L ++DP EEAV G ++ LNA G++C + GG V +
Sbjct: 185 LCLHYQPISISFCLLDSE-LTLLDPNEREEAVKEGMISLVLNAFGELCGVHFLGGIPVSE 243
Query: 253 SVIMQCLRLASRMASDITKKIKDAVE 278
S++++C ++AS A+DI+ +K A+E
Sbjct: 244 SLLLRCGQIASAKANDISAILKKALE 269
>gi|255718091|ref|XP_002555326.1| KLTH0G06644p [Lachancea thermotolerans]
gi|238936710|emb|CAR24889.1| KLTH0G06644p [Lachancea thermotolerans CBS 6340]
Length = 305
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 162/293 (55%), Gaps = 16/293 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A + E +F+ L +R+D R E+R + I+ G + G V +G+T + +
Sbjct: 1 MAKEVEIPAAESKFVIECLRQNLRLDSRKFDEFRSVEIELGDDYGDVTVTMGKTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ + QPY DRP EG I TE SPMA P FE G + E V RI+++ +R S A+D
Sbjct: 61 SCTITQPYEDRPFEGLFFISTETSPMAGPQFENGNNTGEDEVLCSRIIEKAVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H L+ G +DA+ IA + LL F++P+ S+ GE +V +H
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMVGLLHFKKPDVSVSGE---QVTIH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSES------------LLVIDPTHHEEAVMVGKMTA 231
P +EREP+PL + H+PI V+F FF+ E + +ID T EE + G +T
Sbjct: 178 PVDEREPVPLGVLHVPICVSFSFFNPEDAEENIKGESNSEICIIDATLKEELLRDGTLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
TLN N +V + K GG + +M+C A ++ IT +I + ++ T R
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALTLMECCHKAYKITEAITDQINNVLKADATAR 290
>gi|448081285|ref|XP_004194851.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359376273|emb|CCE86855.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 170/287 (59%), Gaps = 16/287 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK-FGREDGSSEVQLGQTHIMGFVTGQLV 69
L+ NE FI SG+R+DGR E R+ I+ E G E++ G + + V+ ++V
Sbjct: 7 LSSNESNFIIEGFKSGVRLDGRKLDEIRQPVIRVLPDEYGYVEIEWGNSKLTVRVSAEVV 66
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P+ DRP EG +I TE SPMA P FE GR S+ + + R++++ +R S A+D E+LC++
Sbjct: 67 KPFEDRPFEGIFTINTEISPMASPQFEQGRVSDDEILISRLIEKAIRRSNALDLEALCMV 126
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG VW IR D+++L+ G ++DAA+ + +L FR+P+ S+ G D VIVH +ERE
Sbjct: 127 AGAKVWYIRADVNVLEFDGGIIDAASFGVMVALQHFRKPDVSIHGSD---VIVHSLQERE 183
Query: 190 PLPLIIHHLPIAVTFGFFS------------SESLLVIDPTHHEEAVMVGKMTATLNANG 237
P+PL + H+PI VTF FF+ +E + +ID T EE++ G + T+N N
Sbjct: 184 PVPLSVLHVPICVTFSFFNPSDSEENIKGELNEEISIIDATEKEESLRDGSLVITINKNR 243
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
++ + K GG + V+M + A +A +++KIK ++ +ER
Sbjct: 244 EIVQLSKNGGLPIDVFVLMDLSKKAYTIAESLSEKIKIFLQKEESER 290
>gi|346971187|gb|EGY14639.1| exosome complex exonuclease RRP45 [Verticillium dahliae VdLs.17]
Length = 305
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 167/272 (61%), Gaps = 13/272 (4%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+VNEK FI AL G+R+DGR +YR + I FG E G +V LG+T ++ ++ ++ P
Sbjct: 8 SVNEKEFILKALHEGVRLDGRPFDQYRNIDISFGDEYGVVDVSLGKTRVIVRISAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G + TE SPMA P FE G+P+++ + L R++++ +R S A+D ESLC++AG
Sbjct: 68 HADRPFDGIFQLATELSPMASPHFEPGKPTDTEMLLSRLLEKTIRRSGALDMESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
VW++R D+H++ + GN+VDAA +AA+A+L FR+P+ + GED + V P ER P+
Sbjct: 128 AKVWSVRADVHVVSHDGNIVDAACLAAVAALRHFRKPDAQVDGED---LTVFTPAERAPV 184
Query: 192 PLIIHHLPIAVTFGFF----------SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
PL H P VTF F + + ++DP EE + V T +LN +G+VC
Sbjct: 185 PLGWLHSPFCVTFAHFGARDGGPDGDGRDGVTLLDPDWREEQLRVASCTISLNKHGEVCQ 244
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
K GG+ V + ++QC LA+R +++ +
Sbjct: 245 ASKLGGDAVEATTLLQCAALAARKVGELSDLV 276
>gi|363752717|ref|XP_003646575.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890210|gb|AET39758.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
Length = 305
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 174/306 (56%), Gaps = 21/306 (6%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A + ++ E FI AL +R+DGR ++R++ I+FG E G V LG+T +
Sbjct: 1 MARDFEISNVESSFILDALRQNLRLDGRGFDQFREVKIEFGDEYGDVTVYLGETKVHCRT 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
T ++ QPY +RP EG I TE SPMA FE G + E V + RI+++ +R S A+D
Sbjct: 61 TAEISQPYDNRPFEGLFLISTEMSPMAGTQFEHGNNTGEDEVLISRIIEKSVRRSGALDL 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC+ AG W+IR D+H LD G +DA+ IA +ASLL FR+P+ ++ GE V VH
Sbjct: 121 EGLCISAGSKCWSIRADVHFLDCDGGFIDASCIAVMASLLHFRKPDVTVFGE---RVTVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
EERE +PL I H+PI VTF FF S++ + +ID + EE + G +T
Sbjct: 178 SIEEREAVPLGILHIPICVTFSFFNPDATEENIKGDSNKEISIIDASLKEEHLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKR 291
TLN N +V + K GG + +M+C + A + IT +I D ++ E +L++ +
Sbjct: 238 TLNKNREVVQVLKAGGLPMDALTLMECCQKAYHITETITTQILDLIK----EDSLKR-NK 292
Query: 292 HPTSIT 297
H T ++
Sbjct: 293 HSTMLS 298
>gi|380025250|ref|XP_003696390.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP45-like [Apis florea]
Length = 411
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 163/265 (61%), Gaps = 6/265 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
EK F+ ++ GIR+DGR+ E R + I F GS V LGQT ++ VT + QP
Sbjct: 10 EKNFVNKSVEQGIRLDGRSLLEARPVKIYFASNWGSCMVLLGQTRVIAQVTCDIQQPKTS 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L I E +PMA F++GR SE ++ + R +++ ++S+ +D ESLC++A K V
Sbjct: 70 RPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKCYQDSKCIDLESLCIIADKKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+D++++++ NL+D A+IA LA+L F RP+ + GED +IVHP E++PLPL
Sbjct: 130 WNLRVDINVINHDXNLIDCASIATLAALSHFHRPDVTSNGED---IIVHPFSEKDPLPLT 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ--KPGGEGVLQ 252
++H P+ V+F F S + V+DPT+ EE + V ++T +N+ ++C++ ++
Sbjct: 187 LYHYPVCVSFITFESGN-TVMDPTYLEERIGVAQLTLGINSYRELCSLHFNYLTKTMTVE 245
Query: 253 SVIMQCLRLASRMASDITKKIKDAV 277
VI A+ A + ++IK+ V
Sbjct: 246 DVISAVSSYATNYAVQLVQQIKETV 270
>gi|414879372|tpg|DAA56503.1| TPA: hypothetical protein ZEAMMB73_591171 [Zea mays]
Length = 545
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/146 (64%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176
ESRAVD E LCV AGK VW++R+DLHILDNGGN +DAANI ALA+L TF RPEC++GG++
Sbjct: 70 ESRAVDMEFLCVFAGKHVWSVRVDLHILDNGGNPIDAANITALAALSTFWRPECTVGGDN 129
Query: 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
+V VH PE R+PLPL IHH+PIAVTF +F +++V+DPT+ EEAVM +MTA +N+N
Sbjct: 130 GQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGERMTAIVNSN 189
Query: 237 GDVCAIQKPGGEGVLQSVIMQCLRLA 262
GDVCAIQK GGEG L S+ M LA
Sbjct: 190 GDVCAIQKAGGEG-LMSICMLIEMLA 214
>gi|322699612|gb|EFY91372.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 288
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 157/252 (62%), Gaps = 9/252 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++EK F+ AL G+R+D R ++R L + FG E G ++V+ I+ V+ ++ P
Sbjct: 8 SLSEKTFLTKALEEGLRLDNRKFEQFRPLELTFGDEFGVADVK-----IVAKVSAEVTVP 62
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G SI +E SPM PSFE RP+E V L RI+++ +R S A+DTESLC++AG
Sbjct: 63 FTDRPFDGIFSISSELSPMVAPSFEVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAG 122
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R D+H+L + GNL+D A A +A+L FR+PE ++ GE + ++ P EREP+
Sbjct: 123 QKCWSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMEGE---TLTIYTPAEREPV 179
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L H P VTF FF E +++D T EE + V T +LN +G++C + K GG V
Sbjct: 180 ALSWLHSPFCVTFSFFGHEGETVLMDTTWLEEQLRVSSCTFSLNKHGEICQVSKLGGADV 239
Query: 251 LQSVIMQCLRLA 262
+ ++C +LA
Sbjct: 240 DAPLFVRCAQLA 251
>gi|348678132|gb|EGZ17949.1| hypothetical protein PHYSODRAFT_502345 [Phytophthora sojae]
Length = 517
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 176/293 (60%), Gaps = 33/293 (11%)
Query: 11 LTVNEKRFIETALSS--GIRIDGRNPFEYRKLSIKFGREDGSS--EVQLGQTHIMGFVTG 66
L+ NE++F+ L +R DGR + RK+ ++F R + S EVQLG+T ++G V G
Sbjct: 10 LSENERQFLANCLRQPPHVRADGRELLQQRKIRVQFRRSETESQAEVQLGRTRVIGNVHG 69
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSE-------SAVELGRIVDRGLRESR 119
++V P+ DRP EG L E SPMA PSFE + +A EL R+V+RG+RESR
Sbjct: 70 EIVPPFPDRPTEGFLHFAVELSPMASPSFEAAASAGRGAASSVAAAELARLVERGVRESR 129
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDD 177
A+DTE+L V+AG+ VWAI +H++D+GGNLVDAA++AA+A+L+ +RRPE ++ G +
Sbjct: 130 ALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRPEVAVKEGTAGN 189
Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFS--------------------SESLLVIDP 217
V V+ +E +PL +HH+PI+++F F E ++ +DP
Sbjct: 190 GGVTVYSVDEHAAVPLSLHHIPISISFCFLQPAAKIQNNAGNDDDIDADEDGEPIIFMDP 249
Query: 218 THHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDIT 270
T EE + +M+ T N+ ++CA+ K GG + QS +++C +A+ ++T
Sbjct: 250 TDREERITDARMSFTFNSFRELCAVHKIGGAAISQSTVLRCANVAAARVVELT 302
>gi|313870783|gb|ADR82276.1| exosome complex exonuclease [Blumeria graminis f. sp. tritici]
Length = 303
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 167/276 (60%), Gaps = 14/276 (5%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPF-EYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++NE++F AL +R+D R PF ++R +++ F G ++ LG T I V+ ++ Q
Sbjct: 8 SLNERQFFTQALRQQLRLDAR-PFDQFRPITLAFAERYGVVDLSLGGTRIHAHVSAEVTQ 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
PY DRP EG +I TE SPM E GR S + + R++++ +R S A+D ESLC+LA
Sbjct: 67 PYPDRPYEGLFTIVTELSPMTHAHLEPGRNSPLEMLVSRLLEKTIRRSGALDPESLCLLA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPPEERE 189
G+ W+IR+D+H+L GNL+DAA+IA +A+L F+RPE ++GG EV ++ ERE
Sbjct: 127 GQTCWSIRVDVHVLSVEGNLIDAASIAVIAALAHFKRPETNTVGG----EVTLYTLAERE 182
Query: 190 PLPLIIHHLPIAVTFGFF-------SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P+PL + H P+ +TF F+ S E +++D EE + G MT +N +G++C +
Sbjct: 183 PVPLSLLHWPLCITFSFYKDHSEGASGEDTVLLDANELEEHMREGSMTIGMNKHGEICQL 242
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
K GG V + +++C+ LAS +++ I ++
Sbjct: 243 VKLGGAPVDAASLLKCVNLASMKVKEVSDIIAKQLQ 278
>gi|322799219|gb|EFZ20634.1| hypothetical protein SINV_00940 [Solenopsis invicta]
Length = 384
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 165/269 (61%), Gaps = 6/269 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT E+ FI + R+DGR E R + I FG G V LG T ++ V+ + Q
Sbjct: 6 LTNCERIFINRCIEEETRLDGRKLLEPRSVKIYFGSSWGCCMVSLGHTRVVTQVSCDIQQ 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEGT+ I E +P+A FE+GRPSE+A+ + R +++ ++S+ VD ESLC++A
Sbjct: 66 PKASRPNEGTIRINVELAPLAAQHFESGRPSEAAILISRQLEKCFKDSKCVDLESLCIVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW +RID++++++ GNL+D A++A LA+L+ F RP+ + GE EVI+HP E++
Sbjct: 126 DKKVWNLRIDVNVINHDGNLIDCASVATLAALIHFHRPDVTSTGE---EVIIHPASEKDF 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ--KPGGE 248
LPL + H PI ++F F S + V+DPT+ EE V V ++T +N+ ++C++
Sbjct: 183 LPLTLFHYPICISFITFQSGN-TVMDPTYLEERVGVAELTLGMNSYRELCSLHFDYLTKT 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
+++ VI A+ A+ + ++IK+ V
Sbjct: 242 MIIEDVISAVSSHAANYATKLVQQIKETV 270
>gi|322709290|gb|EFZ00866.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 288
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 167/280 (59%), Gaps = 13/280 (4%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+++EK F+ AL G+R+D R ++R L + FG E G ++ + I+ V+ ++ P
Sbjct: 8 SLSEKTFVAKALDEGLRLDNRKFEQFRPLELTFGDEFGVADAK-----IVARVSAEVTVP 62
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP +G +I +E SPMA PSFE RP+E V L RI+++ +R S A+DTESLC++AG
Sbjct: 63 FTDRPFDGIFTISSELSPMAAPSFEVNRPTEQEVLLSRILEKTIRRSGALDTESLCLVAG 122
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R D+H+L + GNL+D A A +A+L FR+PE ++ GE + V+ P EREP+
Sbjct: 123 QKCWSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMDGE---TLTVYTPAEREPV 179
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L H P VTF FF + +++D T EE + V T +LN +G++C + K GG V
Sbjct: 180 ALSWLHSPFCVTFSFFGHDGETVLMDTTWLEEQLRVTSCTFSLNKHGEICQVSKLGGADV 239
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
+ ++C +++A D K D V+ E R+ K
Sbjct: 240 DAPLFVRC----AQLALDRVKVFTDLVDRKLMEDGKRRDK 275
>gi|118371223|ref|XP_001018811.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89300578|gb|EAR98566.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 776
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 172/302 (56%), Gaps = 24/302 (7%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL 68
+ L+ NE F+ + L + IR+DGR + R + + FG G EV +G THI+ T ++
Sbjct: 447 YVLSQNESDFVLSGLENEIRLDGRKLMDSRNIKVIFGNNVGEIEVLIGDTHIITKTTAEI 506
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAV-----ELGRIVDRGLRESRAVDT 123
+QP +++PNEG+L + S M D +P+ + E+ +++++ ++ S+A+D
Sbjct: 507 IQPKQEKPNEGSLKFNVDLSSMQDEQ----QPNNVNIKKYSNEIQKLLEKIIKGSKAIDM 562
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
ESLC++ K VW+I +D ++ NGGNL+DA ++ + SLL FR+P S+ + ++++ H
Sbjct: 563 ESLCIVTNKRVWSINVDSSVVSNGGNLIDAIYLSVIISLLHFRKPYVSVEQQSNIKI--H 620
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
E+ P PL IHH+PI TF FF +LLV DP EE +M G++T ++N DVC I
Sbjct: 621 T--EKNPQPLSIHHIPIPFTFAFFKKSTLLVSDPLVLEEQIMEGRLTISVNIYNDVCNIH 678
Query: 244 KPGGEGV------LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSIT 297
KPGG + Q ++ CL +M + + +K+ + ++ +IK IT
Sbjct: 679 KPGGAPIKLELINKQMLVEVCLNKIKQMTDFVRQILKEC-----NKHSINQIKEESKIIT 733
Query: 298 LD 299
L+
Sbjct: 734 LN 735
>gi|241608403|ref|XP_002405972.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
gi|215500728|gb|EEC10222.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
Length = 425
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 164/264 (62%), Gaps = 4/264 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F+ +A+SS R+DGR + R L + G + G LG+T ++ V+ +++ P +
Sbjct: 11 ERDFVRSAVSSNRRVDGRTSKDSRALRLSLGLDRGCCVASLGETKVLAQVSSEVIVPKPN 70
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L + E SPMA P FE GR + VE+ R+++R +R+S VD ESLC++A + V
Sbjct: 71 RPNEGELFVNLELSPMAAPHFEAGRLGDFGVEIARLLERCVRDSHCVDLESLCIVAREKV 130
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W++R+D+ +L++ GN+ + A++A +A+LL FRRP+ EV VH P EREP+PL
Sbjct: 131 WSLRVDVQVLNHRGNIAECASVATVAALLHFRRPD---VTVVGTEVTVHDPREREPVPLH 187
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+HH P ++F F+ +++DP+ EE + G +T +NA+ ++C + + G + +
Sbjct: 188 LHHYPYLMSFAFYDEGKTVLVDPSELEERIADGLLTLGVNAHYEICTLHQRGC-IIGKEQ 246
Query: 255 IMQCLRLASRMASDITKKIKDAVE 278
++ C RLA A IT+ IK+ ++
Sbjct: 247 VLLCSRLACVRAKAITEAIKEDIQ 270
>gi|449303023|gb|EMC99031.1| hypothetical protein BAUCODRAFT_146018 [Baudoinia compniacensis
UAMH 10762]
Length = 295
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 160/264 (60%), Gaps = 6/264 (2%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRED---GSSEVQLGQTHIMGFVTGQLVQ 70
NE+ F+ +AL +R+DGR YR +S+ F G +EV++G+T ++ V+ ++V
Sbjct: 10 NERDFLLSALRQNVRLDGRPLDAYRPISLAFPTHPDVYGQAEVRIGKTRVLCNVSCEVVT 69
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
PY DR +G +I E PMA P+FE GRP ++ + + RI+++ +R S A+DTESLC++A
Sbjct: 70 PYPDRKFDGVFTISCELGPMASPAFEVGRPDQTEMLISRILEKTIRRSGALDTESLCIVA 129
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ + +R D+H+LD+ GNL+DAA IA +A+LL FRRP+ + GED V V EREP
Sbjct: 130 GQKCFHVRADIHVLDHDGNLLDAACIALMAALLHFRRPDFEVHGED---VTVFSVREREP 186
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L + H P +T ++ S +++ D T EE G++ ++N G+VC + K GG V
Sbjct: 187 VKLTVQHHPFCITTSYYDSGQIMLTDATLLEEQCREGEVIVSMNRFGEVCQVAKYGGAAV 246
Query: 251 LQSVIMQCLRLASRMASDITKKIK 274
++ C+ A + K +K
Sbjct: 247 DGLSMLTCVNSALDKVKALDKLVK 270
>gi|440637012|gb|ELR06931.1| hypothetical protein GMDG_02301 [Geomyces destructans 20631-21]
Length = 252
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 151/240 (62%), Gaps = 7/240 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NE++FI AL +R+DGR + R + I FG GS +VQ+G+T ++ ++ L P
Sbjct: 8 SLNERQFILQALEDNLRLDGRGFDDARDVEITFGDAYGSVDVQMGKTRVLATISCSLSPP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
RP +G ++ TEFSPMA P+ + RPS L R++D+ LR S A+DTESLC+LAG
Sbjct: 68 SPPRPFDGIFTLTTEFSPMATPTVDPSRPSPPETLLARLLDKTLRRSAALDTESLCLLAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VWAI DLHIL +GG L+DA +AALA LL FRRPE S+ GE +V ++ EER P+
Sbjct: 128 KSVWAICCDLHILSHGGGLLDACCVAALAGLLHFRRPEVSVEGE---KVTIYSAEERAPV 184
Query: 192 PLIIHHLPIAVTFGFF----SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL + HLP VTF F E +++D EE V G +T +N +G+VC I K GG
Sbjct: 185 PLSLLHLPFCVTFSIFGIRSGEEEAVLLDADRAEEGVREGAVTVGVNRHGEVCQIAKLGG 244
>gi|449544735|gb|EMD35707.1| hypothetical protein CERSUDRAFT_115670 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 146/237 (61%), Gaps = 4/237 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ AL +R+DGR P E R +I FG E G E LG+T ++ V ++V+P
Sbjct: 8 SIPEKEFVYGALKEKLRVDGRLPLEMRTPTITFGPELGWVECALGKTRVLAQVDAKMVKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E SPMA +E GRPS+ V + R++D+ LR S VD ESLC+LAG
Sbjct: 68 LPERPLEGIITIHSEISPMASSDYEPGRPSDEEVTITRMLDKVLRRSDVVDKESLCILAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW +R+ +H L + GN++D A +A + + FRRPE EV VH P ER P+
Sbjct: 128 QRVWHLRLTIHCLADAGNMLDCACLAGVIAFKHFRRPE---VEVVGEEVTVHHPSERAPV 184
Query: 192 PLIIHHLPIAVTFGFFSSESLL-VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL +HH P +TF +F S V+DP+H E+ + G ++ LNA ++C +QK GG
Sbjct: 185 PLSMHHTPYCLTFAYFPDTSTAPVLDPSHLEQRLSAGLLSIALNAQRELCVVQKAGG 241
>gi|378733642|gb|EHY60101.1| exoribonuclease like to ribonuclease PH [Exophiala dermatitidis
NIH/UT8656]
Length = 291
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 157/244 (64%), Gaps = 4/244 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI AL +R+DGR ++R + ++FG E G++ ++LG+T + ++ ++ +P +
Sbjct: 11 ERNFILEALEQNVRVDGRPLDQFRGIELEFGAEYGTATLRLGKTRVHVQISAEVTKPLEE 70
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R EG +I TE SP+A P++E GR +E V L RI+++ +R S A+DTESLC++AG
Sbjct: 71 RKFEGIFTIVTELSPIASPAYEVGRQTEQEVILSRILEKAIRRSNALDTESLCIIAGAKC 130
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W++R D+H+LD+ G L+DA+ IA +A+L FRRP+ S+ GE+ V ++ ER P+PL
Sbjct: 131 WSVRADVHVLDSDGGLIDASCIAIVAALRHFRRPDVSVDGEN---VTIYTMAERVPVPLS 187
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ H P+ +TF F+ +++D T EE V ++ T+N + ++C I K GG + V
Sbjct: 188 LMHNPVCITFSFYHGGETVLLDATRSEEQVREAEVILTVN-DFELCQIAKLGGSPIDALV 246
Query: 255 IMQC 258
+++C
Sbjct: 247 LLKC 250
>gi|358056344|dbj|GAA97711.1| hypothetical protein E5Q_04390 [Mixia osmundae IAM 14324]
Length = 287
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/257 (41%), Positives = 164/257 (63%), Gaps = 7/257 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E F +AL+ G R+DGR + R +S+ FG E GS +G+T +M V+ ++V+
Sbjct: 6 LSTVESSFALSALAQGRRLDGRTLTDTRTVSLSFGAELGSVTCSMGKTRVMAQVSAEVVR 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +RP EG L I TE +P+A ++E R +E + + R +++ +R + AVD ESLC++A
Sbjct: 66 PPPERPYEGFLVISTEVTPLASAAYEMNRQTEEEILVARTLEKAIRRTEAVDRESLCIVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G VW+IR+D+H L++ GNL D A +AA+A+LL FRRP+ ++ E+ +V +H EER P
Sbjct: 126 GDKVWSIRVDVHFLNDDGNLADCACLAAMAALLHFRRPDVTV--ENGADVTIHSLEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFS-----SESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+PL IHH P+ VTF FF S+S++ IDPT E + G++T TLNA ++C + K
Sbjct: 184 VPLAIHHTPLCVTFAFFENQASPSDSIVAIDPTGLETQISSGEITYTLNAQSEICVLSKA 243
Query: 246 GGEGVLQSVIMQCLRLA 262
GG + IM+ + LA
Sbjct: 244 GGTPLAGREIMRMMGLA 260
>gi|313230944|emb|CBY18942.1| unnamed protein product [Oikopleura dioica]
Length = 441
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 166/286 (58%), Gaps = 12/286 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F ++A+ G R+DGR+ E RK SI+FG+E G+ +G T + V+ L +P
Sbjct: 10 EENFAKSAIFEGSRLDGRSYLEMRKCSIEFGQEFGTCVASIGNTRALAHVSCSLDRPSEV 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP+EG + E P+A PSFE + S A++L R++++ + +SR +D E LCV AG+
Sbjct: 70 RPSEGKIVFKVELPPLASPSFELNKKSAFAIDLNRLLEKAIVQSRCIDIEELCVRAGEQC 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+++ L++ GNL DA +AA+ +L+ F+RPE ++ G D V +H +E+EP L
Sbjct: 130 WTLRVEVTALNHEGNLSDALCLAAMGALMHFKRPEVTVDGHD---VKIHTADEKEPTRLT 186
Query: 195 IHHLPIAVTFGFFSS---------ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+HH P VT G+ + +LV+DP EE V+ G ++ +N + ++CA++
Sbjct: 187 LHHKPFCVTIGYIEDGRTDSDGDRQKILVLDPVRQEEQVLSGIISIAINKHREICAMRVS 246
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKR 291
G + S I+ C ++A+ D+ I+ A++ + +R +I R
Sbjct: 247 GNRELDCSQILSCTKIAAAKVKDLQSLIESAIKKDDKQRKKGRIPR 292
>gi|425766655|gb|EKV05258.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum Pd1]
gi|425775306|gb|EKV13584.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum PHI26]
Length = 324
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 159/276 (57%), Gaps = 3/276 (1%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLV 69
+L++ E+ FI AL +R+DGR P +YR L+I FG E G ++QLG+T+++ ++ ++
Sbjct: 33 QLSIAEREFILEALRENVRLDGRQPDDYRPLNISFGEEYGHVKLQLGKTNLIVRISAEVT 92
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P DRP +G +I E S M P++E GR ++ +DR +R S A+DTESLC+L
Sbjct: 93 KPREDRPFDGLFNINLELSAMGSPAWENGRTNDIEAYATNALDRIIRHSNALDTESLCIL 152
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
G W+IR D+HI+D GN+ DAA IA +A L FRRP+ + D VIV+ E+R
Sbjct: 153 KGVSCWSIRADIHIIDYDGNITDAACIAIMAGLQHFRRPDAVV---RDGRVIVYGVEQRV 209
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
P+ L I H P++VTF F+ +++D T EE G + +N+ GDVC + K G
Sbjct: 210 PVALNITHKPLSVTFHTFNESKHVIVDATLKEEQAAEGDLVIGINSAGDVCYLSKYAGAP 269
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
VI+ +A +I ++ ++ +RA
Sbjct: 270 ADAMVIVNKTNVAWEKVKEINAAVEKVLQADLAKRA 305
>gi|116207378|ref|XP_001229498.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
gi|88183579|gb|EAQ91047.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
Length = 268
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 151/234 (64%), Gaps = 4/234 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK+F+ AL +R+DGR +YR L + FG + G ++V LG+T ++ T ++ P
Sbjct: 8 SLNEKQFVTQALQENLRLDGRQLDQYRPLELTFGDQYGVADVTLGKTRVLAKATAEVTVP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPM P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YVDRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKTVRRSGALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W++R+D+H++ + G L DAA +A +A+L FR+P+ S+ + V+ P EREP+
Sbjct: 128 QKCWSVRVDVHVVSHDGGLTDAACVAVVAALRHFRKPDTSMEAG---RLTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
PL H P+ VT+ FF + V+D T EE V V T +LN +G++C I K
Sbjct: 185 PLSWLHSPLCVTWSFFGDDGETAVLDATWLEEQVRVASCTVSLNKHGEICQIAK 238
>gi|268573886|ref|XP_002641920.1| C. briggsae CBR-EXOS-9 protein [Caenorhabditis briggsae]
Length = 434
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 187/373 (50%), Gaps = 10/373 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT EK I AL SG R D R E+R + + G E G++ +G T ++ V+ Q+ +
Sbjct: 6 LTTCEKEVILEALKSGKRFDFRGLEEFRGVKLVVGSEIGTAICTIGNTKVIAAVSAQIAE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP++G + I + SPMA+ S E R +EL R+++ +R+SR +D ESLC+ A
Sbjct: 66 PSSMRPHKGVIIIDVDLSPMANVSNEHDRLGSKGMELIRLLELIIRDSRCIDVESLCIRA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK +W +R+D+ ILD G+L+D A +AA+ +L F+RP +L L ++ E+ P
Sbjct: 126 GKEIWKVRVDVRILDEDGSLLDCACLAAITALQHFKRPNVTLEPHHTL---IYSEYEKAP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I+H+PI T G ++VIDPT E A + G + N +VCA+ + +
Sbjct: 183 VPLNIYHMPICTTIGLLDKGQMVVIDPTEKEAACLDGSIVVACNKRREVCALHQSTNLVL 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK----IKRHPTSITLDGSVNLKE 306
I +C++LA A +T + D ++ ER+ K S+ L
Sbjct: 243 STKQIERCVKLAMSRAEALTAVVSDVIKQDQRERSAFKRPDGFSITTPSLILTSGTAAAR 302
Query: 307 KLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRRDGATSNFV 366
++N P + E K L +P + EN S G+ + E + + N V
Sbjct: 303 QINAPRIQH-GREPEEKMLYQPSVIVNENPLSVGSVKQEEVDEDAL--IAEQLSIIQNSV 359
Query: 367 GGAASWDPYSRGV 379
GG A DP S GV
Sbjct: 360 GGVAVSDPQSSGV 372
>gi|212532847|ref|XP_002146580.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210071944|gb|EEA26033.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 294
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 155/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ E+ FI AL IR+DGR+ +R LS+ FG E G +VQLGQT ++ ++ ++ +
Sbjct: 7 LSLAEREFILEALLENIRVDGRDADAFRPLSVTFGEEYGHVKVQLGQTSLVVRISAEVSK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P DR ++GT I E + M P++E R SE + R++DR +R S A+DTESLC+L
Sbjct: 67 PRDDRQSDGTFLIAMELTAMGSPAWENLRQSEFETYVSRVLDRVIRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W IR D+H+ + GNL+D+A I +A L FRRP+ + D +V V ER P
Sbjct: 127 GKSCWNIRADVHVTNFDGNLIDSACIGIMAGLQHFRRPDIEV---KDGQVTVFGINERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P+A+TF F +L++D T EE G + LN G+ CA+ K G V
Sbjct: 184 VPLNITHKPLAITFQSFHEGKVLILDATRKEEQASKGDLIIALNNTGETCAVYKSAGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
++ LA + ++ I A+E RA
Sbjct: 244 SALEVINKTNLAQQKVLELNGMISKALEADLARRA 278
>gi|340371255|ref|XP_003384161.1| PREDICTED: exosome complex component RRP45-like [Amphimedon
queenslandica]
Length = 410
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 158/260 (60%), Gaps = 6/260 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG-REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
EK F A+ R+DGR+ ++YR++ IK G+ V +G+T + V ++V P
Sbjct: 13 EKEFTLEAIQERKRLDGRSVYDYRQVFIKPSPVTHGNVLVTIGETRVQACVGCEVVVPRP 72
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
RP +G L SPMA P+++ G+ S + + + R++DR +ESR++DTESLC++AG+
Sbjct: 73 QRPTDGLLYFNVLPSPMAAPNYDIGKSSLT-MRVERLLDRCFKESRSLDTESLCIIAGQK 131
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW+IR+D+HIL++ GN+ D +A+ +L RRP ++ GE +HP EREP+PL
Sbjct: 132 VWSIRVDIHILNDSGNITDCCVMASFCALKHCRRPYVTVSGE---HATIHPVSEREPVPL 188
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
IHH PI +TFGF S + L++DP+ EE V+ G + +N + ++C +Q G +
Sbjct: 189 NIHHTPICITFGFLSEGNYLLVDPSIEEEKVLTGHLYIVMNIHREICTMQLEGV-ALQHE 247
Query: 254 VIMQCLRLASRMASDITKKI 273
+++C ++A +++ K I
Sbjct: 248 EVVKCTKIAMTKVNELNKSI 267
>gi|301097178|ref|XP_002897684.1| exosome complex exonuclease RRP45-like protein [Phytophthora
infestans T30-4]
gi|262106705|gb|EEY64757.1| exosome complex exonuclease RRP45-like protein [Phytophthora
infestans T30-4]
Length = 513
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 175/293 (59%), Gaps = 33/293 (11%)
Query: 11 LTVNEKRFIETAL--SSGIRIDGRNPFEYRKLSIKFGREDGSS--EVQLGQTHIMGFVTG 66
L+ NE++F+ L S +R DGR+ + RK+ ++F R + S EVQLG+T ++G V G
Sbjct: 10 LSENERQFLANCLRVSPHLRADGRDLLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHG 69
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELG-------RIVDRGLRESR 119
++V P+ DRP EG L E SPMA PSFE + R+V+RGLRESR
Sbjct: 70 EIVPPFPDRPTEGFLHFAVELSPMASPSFEASASASRGAASSVAAAELARLVERGLRESR 129
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDD 177
A+DTE+L V+AG+ VWAI +H++D+GGN+VDAA++AA+ASL+ +RRPE ++ G +
Sbjct: 130 ALDTEALAVVAGEKVWAITCHVHVVDHGGNIVDAASLAAIASLMHYRRPEVAVKEGTTGN 189
Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS--------------------ESLLVIDP 217
V V+ +E +PL +HH+PI+++F F + E ++ +DP
Sbjct: 190 GGVTVYSVDEHSAVPLSLHHIPISISFCFLQAAGRMQCSSDNDDGVDTDEDGEPIIFMDP 249
Query: 218 THHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDIT 270
T EE + +M+ T N+ ++CA+ K GG + Q+ +++C +A+ ++T
Sbjct: 250 TDREERITDARMSFTFNSFRELCAVHKIGGTAISQATVLRCANVAAARVVELT 302
>gi|307180205|gb|EFN68238.1| Exosome complex exonuclease RRP45 [Camponotus floridanus]
Length = 387
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 178/307 (57%), Gaps = 16/307 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT E+ F+ + R+DGR + R + I FG + G V LG T + V+ + Q
Sbjct: 6 LTNCERNFVNKCIEEETRLDGRRLLQPRPVKIYFGSKWGCCMVSLGHTKAIAQVSCDIRQ 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEGT+ I E +P+A FE+GR SE+A+ + R +++ ++S+ VD ESLC++A
Sbjct: 66 PKTFRPNEGTIYINVELAPLAAQHFESGRQSEAAILISRQLEKCFKDSKCVDLESLCIVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW++RID++I+++ GNL+D A+IA LA+L+ F RP+ + GE E+I+HP E++
Sbjct: 126 DKKVWSLRIDINIINHDGNLIDCASIAVLAALMHFHRPDVTSTGE---EIIIHPASEKDF 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI------QK 244
LPL + H P+ V+F F + + ++DPT+ EE V V ++T +N+ ++C++ +
Sbjct: 183 LPLTLFHYPVCVSFITFENGN-TIMDPTYIEERVGVAELTLGMNSYRELCSLHFDYLTKT 241
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKI-KDAVETY-----NTERALRKIKRHPTSITL 298
E V+ +V A+++ DI + + KD Y +T R I+ + + +
Sbjct: 242 MTVEDVISAVSNHAANYATKLVQDIKEAVAKDVQSRYKKDDSDTSRFKESIQTNKITTMI 301
Query: 299 DGSVNLK 305
+++K
Sbjct: 302 SDHISIK 308
>gi|255935559|ref|XP_002558806.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583426|emb|CAP91438.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 297
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 160/276 (57%), Gaps = 3/276 (1%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLV 69
+L++ E+ FI AL +R+DGR P +YR L+I FG E G +QLG+T+I+ ++ ++
Sbjct: 6 QLSIAERDFILEALRENVRLDGRQPDDYRPLNISFGEEYGHVNLQLGKTNIIVRISAEVT 65
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P DRP +G +I E + M P++E+GR ++ +DR +R S A+DTESLC+L
Sbjct: 66 KPREDRPFDGLFNINLELTAMGSPAWESGRTNDIEAYATNTLDRIIRHSNALDTESLCIL 125
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
G W+IR D+H++D GN+ DAA IA +A L FRRP+ + D VIV+ E+R
Sbjct: 126 KGVSCWSIRADVHVIDYDGNITDAACIAIMAGLQHFRRPDAVVR---DGRVIVYGVEQRV 182
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
P+ L I H P++VTF F+ +++D T EE G + +N+ GDVC + K G
Sbjct: 183 PVALNITHKPLSVTFHTFNDSKHVIVDATLKEEQAAEGDLVIGINSAGDVCYLSKYAGAP 242
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
VI++ +A +I ++ ++ +RA
Sbjct: 243 ADAMVIVKKTNVAWEKVKEINAAVEKVLQADLAKRA 278
>gi|440473323|gb|ELQ42126.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae Y34]
gi|440486517|gb|ELQ66377.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae P131]
Length = 251
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 139/214 (64%), Gaps = 4/214 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NEK F+ AL +R+DGR+ EYR + + FG E G EV+ G+T I+ + ++ P
Sbjct: 8 SLNEKAFLLQALQQNLRLDGRDIDEYRPIKLSFGDEYGLVEVEFGKTRIVAKASAEVTIP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G +I TE SPMA P+FE RP+E+ V L R++++ +R S A+DTESLC++AG
Sbjct: 68 YTDRPFDGIFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKTIRRSNALDTESLCLVAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W+IR+D+H + GNL+DA+ +A +A+L FR+P+ S+ GE V V+ P EREP+
Sbjct: 128 QKCWSIRVDVHAESHDGNLIDASCLAVVAALRHFRKPDTSIEGE---VVTVYTPAEREPV 184
Query: 192 PLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAV 224
PL H P VTF FF + V+D EE V
Sbjct: 185 PLSWLHSPFCVTFSFFGDLGDMFVVDANWLEEQV 218
>gi|327303316|ref|XP_003236350.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326461692|gb|EGD87145.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 292
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++VNE+ FI AL +R+DGR + R + + FG E G+ +VQLG+T ++ +
Sbjct: 1 MARDAEISVNERAFILEALHKNLRLDGRRFDQLRPVELTFGDEHGNVKVQLGKTAVLVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ +L P +R +G ++ E + MA P +ETGRPSE V L R +D+ +R S A+DTE
Sbjct: 61 SAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G++ W IR D+HILD G L+DA+ +A +A LL FR PE ++ D EV V
Sbjct: 121 SLCIAKGRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTV---RDGEVTVFT 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
EE+ P+ L + +P++VTF + ++++D T EEAV G + L+ G++ K
Sbjct: 178 TEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSK 237
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
P G ++ C LA ++ K + +E E+ +R+ KR PT+
Sbjct: 238 PDGAPADPVNMVNCSTLALEKVRELNKLLAARLE---EEKQIREKKR-PTA 284
>gi|225713980|gb|ACO12836.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 363
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 170/280 (60%), Gaps = 14/280 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E FI +ALS G R+DGR E R L+I FGRE G++EV+LG+T ++ + + +P
Sbjct: 7 EHSFILSALSEGKRLDGRKLDERRDLTIHFGREWGTTEVKLGETRVLASTSCSVGEPQSS 66
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L I E P+A S T E+ VEL R+++R L++S+ +D ESLC+ + + V
Sbjct: 67 RPNEGVLKIRME--PLAKRSMTT----EALVELNRVIERVLKQSKCLDMESLCISSEEKV 120
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W I +++ IL++ GN D A++A LA+L F+RP+ +L G+ ++ +HP ER+P+ L
Sbjct: 121 WIISLEMTILNDAGNAADCASVAGLAALCHFKRPDVTLKGD---KIRIHPFYERDPVSLA 177
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+HH P+ TF + +L DP+ EE VM GK+ +N ++CA+ G + V + +
Sbjct: 178 VHHHPVLSTFALYGRVAL--SDPSRDEEVVMDGKVVLGMNPYREICALHLAGQKLVDKRL 235
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT 294
++Q A+ A +I K+K+ E E+A RK+K +P
Sbjct: 236 VLQLASKAAEYAKNIVNKLKN--ELKLDEKA-RKMKENPC 272
>gi|406868202|gb|EKD21239.1| exosome complex exonuclease [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 305
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 163/279 (58%), Gaps = 18/279 (6%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++NE++F AL IR+DGR +YR + ++FG E G ++ LG+T I ++ + P
Sbjct: 8 SLNERQFFAKALHENIRLDGRAFDQYRAVELEFGEELGVVDLSLGKTRIHTHISATITPP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETG-RPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +G +I TE SPM PS E+ RPS + L R++++ +R S A+DTESLC++A
Sbjct: 68 LPTHPTDGLFTITTELSPMLSPSIESSSRPSVNETLLSRLLEKTIRRSSALDTESLCLIA 127
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G VW IR D+H+L + GNLVDAA + +A+L FR+P+ GE EVIV+ EREP
Sbjct: 128 GSKVWHIRADVHVLSHDGNLVDAACLGVIAALQHFRKPDVETKGE---EVIVYSTREREP 184
Query: 191 LPLIIHHLPIAVTFGFFSSESL----------LVIDPTHHEEAVMVGKMTATLNANGDVC 240
+ L + H P+ VTF F+ L +++D EE + G +T +N +G+VC
Sbjct: 185 VKLSLLHFPLCVTFSFYGEGILGKDGEGEKEKVLLDAGLLEEQLREGSVTVGMNRHGEVC 244
Query: 241 AIQKPGGEGVLQSVIMQCLRLA----SRMASDITKKIKD 275
I K GG V +++C+ +A M+S I +++++
Sbjct: 245 QIAKLGGVPVHALTVLRCVEVAGLKVKEMSSFIARRLQE 283
>gi|326469540|gb|EGD93549.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326478933|gb|EGE02943.1| exosome complex exonuclease RRP45 [Trichophyton equinum CBS 127.97]
Length = 292
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++VNE+ FI AL +R+DGR + R + + FG E G+ +VQLG+T ++ +
Sbjct: 1 MARDAEISVNERAFILEALHKNVRLDGRRFDQLRPVELTFGEEHGNVKVQLGKTAVLVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ +L P +R +G ++ E + MA P +ETGRPSE V L R +D+ +R S A+DTE
Sbjct: 61 SAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G++ W +R D+HILD G L+DA+ +A +A LL FR PE ++ D EV V
Sbjct: 121 SLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTV---RDGEVTVFT 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
EE+ P+ L + +P++VTF + ++++D T EEAV G + L+ G++ K
Sbjct: 178 TEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSK 237
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
P G ++ C LA ++ K + +E ++ +R+ KR PT+
Sbjct: 238 PDGAPADPVNMVNCSTLALEKVRELNKLLAARLE---EDKQMREKKR-PTA 284
>gi|321478855|gb|EFX89812.1| hypothetical protein DAPPUDRAFT_40604 [Daphnia pulex]
Length = 279
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 166/277 (59%), Gaps = 10/277 (3%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ EK+ + + G R+DGR+ E RK I FG E G +V LG T +M V+ +
Sbjct: 6 LSICEKQTVIQGVKEGQRVDGRSLSEQRKTCITFGTEWGCCQVLLGNTRVMAQVSCSVQV 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P R NEG L I E S MA FE GR + +E+ R+V+R +++SR +D ESLC+L
Sbjct: 66 PKSSRANEGMLFINVEMSTMAAEHFEAGRLGQQGIEVNRLVERCIKDSRCIDLESLCILV 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
+ W +R+D+HIL++ GNL+DAA +AAL +L F+RP+ +L G D VI+H +ER+P
Sbjct: 126 EEQAWEVRVDIHILNHEGNLIDAATLAALGALCHFKRPDVTLDGRD---VIIHQLDERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEG 249
+PL I H P+ ++F F ++ + V+DPT+ EE GK+ LNA ++C +Q G G
Sbjct: 183 VPLTILHHPLTLSFALF-NQGICVLDPTNLEERSADGKLVMGLNAYRELCTLQISGDGVF 241
Query: 250 VLQSVIMQCLRLASRMASDITKKIK-----DAVETYN 281
+ + ++ C +A+ A + + +K DA E Y+
Sbjct: 242 IHKEAVISCANVAASRAVQMVEMLKKSLADDAAERYS 278
>gi|302654106|ref|XP_003018865.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
gi|291182546|gb|EFE38220.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
Length = 292
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++VNE+ FI AL +R+DGR + R + + FG E G+ +VQLG+T ++ +
Sbjct: 1 MARDAEISVNERAFILEALHKNVRLDGRRFDQLRPVELTFGEEHGNVKVQLGKTAVLVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ +L P +R +G ++ E + MA P +ETGRPSE V L R +D+ +R S A+DTE
Sbjct: 61 SAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G++ W +R D+HILD G L+DA+ +A +A LL FR PE ++ D EV V
Sbjct: 121 SLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTV---RDGEVTVFT 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
EE+ P+ L + +P++VTF + ++++D T EEAV G + L+ G++ K
Sbjct: 178 TEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSK 237
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
P G ++ C LA ++ K + +E ++ +R+ KR PT+
Sbjct: 238 PDGAPADPVNMVNCSTLALEKVRELNKLLAARLE---EDKQIREKKR-PTA 284
>gi|402592869|gb|EJW86796.1| hypothetical protein WUBG_02293 [Wuchereria bancrofti]
Length = 393
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 161/274 (58%), Gaps = 4/274 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F + +R+DGR E+R++ + G E GS V LG+T ++ V+ LV+P
Sbjct: 10 ERAFFLNSFKQNVRVDGRKCDEFREVKVIVGSELGSCLVMLGETKVLAQVSCSLVEPSTT 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R N GT+ + + SPMA P +E GR + +EL RI++ R+ VD ESLC+ K V
Sbjct: 70 RGNMGTIEVQVDMSPMASPDYEDGRLNSKGLELMRILELLYRDCGVVDLESLCLRTFKQV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W IRID+H+L + G+LVD A IA+ +L FRRP+ S+ + +I+H +E+ P+ L
Sbjct: 130 WQIRIDVHVLASDGSLVDCACIASSTALAHFRRPDVSVLPD---SIIIHSNDEKIPISLN 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
I+H+PI VTFG +S+ +IDPT EE + G + N ++CA+ + G + + +
Sbjct: 187 IYHMPICVTFG-ITSDGQNIIDPTDKEEQCLGGSLIVATNKRHEICALHQSGKFLLSEQL 245
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
I+QC+ A + A D+++ I + N +R+ R+
Sbjct: 246 IVQCVDRAIQRAIDVSELIYSVIADDNLKRSNRQ 279
>gi|398404486|ref|XP_003853709.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
gi|339473592|gb|EGP88685.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
Length = 292
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 166/271 (61%), Gaps = 3/271 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
NE+ F+ +AL IR+D R ++R + + FG E G +V+LG+T +M ++ +++ PY
Sbjct: 10 NERDFLLSALRENIRLDNRAFDQFRPIELAFGDEYGVCDVRLGKTRVMVAISAEVIAPYT 69
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
DR +G +I TE SP+A P+FE GR ++ + L R++++ +R S A+DTESLC++AG
Sbjct: 70 DRKFDGVFTISTELSPIASPAFEVGRQDQTEILLSRLLEKTIRRSGALDTESLCIIAGSK 129
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
+ IR D+H+LD+ GN++DAA +A +A+L+ FRRP+ + GE EV V +EREP+ L
Sbjct: 130 CFHIRADIHVLDHDGNIIDAACVALVAALMHFRRPDIEIHGE---EVTVFSLQEREPVKL 186
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ H P +T ++ S +++ D T EE G++ ++N G+VC I K GG V
Sbjct: 187 QMQHQPFCITTSYYESGEVMLQDATLLEEHCREGEVVVSINRFGEVCQIAKYGGAPVDGL 246
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTER 284
++ C A A + K +K +E + +R
Sbjct: 247 SVLNCTTAALEKAKWLDKFVKFKLEEDDNKR 277
>gi|324510352|gb|ADY44328.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 431
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 157/274 (57%), Gaps = 3/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+ FI +A + +R+DGR E+R L + G E G+S V G T + VT +V+
Sbjct: 6 LSNCERDFILSAFAENVRLDGRKCDEFRDLKVVVGAEFGTSLVMAGSTKVSAQVTCNIVE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P R N G + + + SPM P+ E GR +EL R+++ R+ AVD E+LC+ A
Sbjct: 66 PKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPKGIELTRVLELLCRDCGAVDLEALCLTA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW IR+D+HIL G L+D A++AA+ +L FRRP+ ++ + ++VH +++ P
Sbjct: 126 YKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPDVTVLVDS---ILVHGSDKKAP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL ++H+PI V+FG +VIDPT E + G N +VCA+ + G +
Sbjct: 183 IPLTVYHMPICVSFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHEVCALHQTGNLLL 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
+ +I++C+ +A + A D+T+ I + N +R
Sbjct: 243 NEQLIVRCVDMAIQRAIDVTELISTVLTDDNNKR 276
>gi|296812847|ref|XP_002846761.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
gi|238842017|gb|EEQ31679.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
Length = 292
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 165/285 (57%), Gaps = 7/285 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++VNE+ FI AL +R+DGR + R + + FG E G+ +VQLG+T ++ ++ +L
Sbjct: 7 ISVNERAFILEALHKNVRLDGRKFDQLRSVDLTFGEEHGTVKVQLGKTAVLVRISAELTT 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R +G ++ E + MA P +ETGRPSE V L R +D+ +R S A+DTESLC+
Sbjct: 67 PRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTESLCIAK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G++ W IR D+HILD G L+DA+ +A +A LL FR PE ++ D EV V EE+ P
Sbjct: 127 GRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRLPESTV---RDGEVTVFSMEEKVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L + +P+AVTF + ++++D T EE V G + L+ G++ KP G
Sbjct: 184 VSLNLTKIPLAVTFNLYDEGRIVLLDATAGEEVVSEGSLVIALDKTGEIALYSKPDGAPA 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
++ C +A ++ K I +E ++ +R+ K+ PT+
Sbjct: 244 DPVNMVTCSTVALAKVRELNKLISAKLE---EDKQMRE-KKRPTA 284
>gi|315050464|ref|XP_003174606.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
gi|311339921|gb|EFQ99123.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
Length = 292
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 3/243 (1%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A +++NE+ FI AL +R+DGR + R + + FG E GS +VQLG+T ++ +
Sbjct: 1 MARDTEISLNERAFILEALHKNVRLDGRRFDQLRPVELTFGEEHGSVKVQLGKTTVLVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ +L P +R +G ++ E + MA P +ETGRPSE V L R +D+ +R S A+DTE
Sbjct: 61 SAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKIVRRSNALDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G + W +R D+HILD G LVDA+ +A +A LL FR PE ++ D EV V
Sbjct: 121 SLCISKGMICWNVRADIHILDCDGGLVDASCLAIMAGLLHFRLPESTV---RDGEVTVFT 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
EE+ P+ L + +P++VTF + ++++D T EEAV G + L+ G++ K
Sbjct: 178 TEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEGSLVVALDKTGEIALYSK 237
Query: 245 PGG 247
P G
Sbjct: 238 PDG 240
>gi|324513828|gb|ADY45664.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 419
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 157/274 (57%), Gaps = 3/274 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+ FI +A + +R+DGR E+R L + G E G+S V G T + VT +V+
Sbjct: 6 LSNCERDFILSAFAENVRLDGRKCDEFRDLKVVVGAEFGTSLVMAGSTKVSAQVTCNIVE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P R N G + + + SPM P+ E GR +EL R+++ R+ AVD E+LC+ A
Sbjct: 66 PKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPKGIELTRVLELLCRDCGAVDLEALCLTA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW IR+D+HIL G L+D A++AA+ +L FRRP+ ++ + ++VH +++ P
Sbjct: 126 YKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPDVTVLVDS---ILVHGSDKKAP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL ++H+PI V+FG +VIDPT E + G N +VCA+ + G +
Sbjct: 183 IPLTVYHMPICVSFGIAPDGEQVVIDPTEREAMCLKGAFVVAANKRHEVCALHQTGNLLL 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
+ +I++C+ +A + A D+T+ I + N +R
Sbjct: 243 NEQLIVRCVDMAIQRAIDVTELISTVLTDDNNKR 276
>gi|261190048|ref|XP_002621434.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239591262|gb|EEQ73843.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239606325|gb|EEQ83312.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327353102|gb|EGE81959.1| exosome complex exonuclease RRP45 [Ajellomyces dermatitidis ATCC
18188]
Length = 293
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 144/237 (60%), Gaps = 3/237 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE+ FI AL +R+DGR + R L++ FG E G ++QLG+T ++ ++ ++ +
Sbjct: 7 ISANERTFILEALHKNVRLDGRALDQLRPLTVSFGDEYGHVKLQLGKTSVVVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R N+G ++ E + MA P++ETGR SE +L R +DR +R S A+DTESLC+ A
Sbjct: 67 PRPERENDGIFTVSVELNDMASPAYETGRQSELETQLVRTLDRIIRRSNALDTESLCIAA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W +R D+H++D+ G LVD+ +A + LL FR PE + D V V+ PEER P
Sbjct: 127 GKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVR---DGRVTVYRPEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL + LP++ TF + ++V+D T EEAV G + L+ G++ KP G
Sbjct: 184 SPLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALDKTGEISLYTKPDG 240
>gi|307214871|gb|EFN89739.1| Exosome complex exonuclease RRP45 [Harpegnathos saltator]
Length = 390
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 180/317 (56%), Gaps = 10/317 (3%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT E+ F+ + R+DGR E R + I FG G V LG T + V+ + Q
Sbjct: 6 LTNCERNFVNKCIQEETRLDGRRLLEARSVKIHFGSNWGCCMVSLGHTKAIAQVSCDIQQ 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG + I E S +A +FE+GR SE+AV + R +++ ++S+ VD ESLC++A
Sbjct: 66 PKISRPNEGMIHINVELSQLAAQNFESGRQSEAAVMISRQLEKCFKDSKCVDLESLCIVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW IR+D++I+++ GNL+D A+IA LA+L F RP+ + GE E+I+HP E++
Sbjct: 126 DKKVWNIRVDINIINHDGNLIDCASIATLAALSHFHRPDVTSTGE---EIIIHPASEKDF 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L L + H P+ ++F F S + ++DPT+ EE + V ++T +N+ ++C++
Sbjct: 183 LSLTLFHYPVCISFITFESGN-TIMDPTYIEERIGVARLTLGVNSYKELCSLNFDYLTKT 241
Query: 251 L--QSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKL 308
+ + VI A+ A+ + ++IK+ V T N + +K K S+N +KL
Sbjct: 242 MSVKDVISAVSNHAATYAAKLVQQIKETV-TNNIQSRYKKDKSDICG--FKESIN-ADKL 297
Query: 309 NEPSGHNVVNELSRKHL 325
G+++ +LS+ L
Sbjct: 298 TSIIGNHISIKLSKWDL 314
>gi|332027278|gb|EGI67362.1| Exosome complex exonuclease RRP45 [Acromyrmex echinatior]
Length = 390
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 157/265 (59%), Gaps = 6/265 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI + R+DGR E R I F G V LG T + V+ + QP
Sbjct: 10 ERNFINKCIEEETRLDGRKLLEPRLAKIYFSSNWGCCMVSLGHTKAVAQVSCDIQQPKAS 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG + I E +P+A FE GR SE+A+ + R +++ ++S+ VD ESLC++A K V
Sbjct: 70 RPNEGMIRINVELAPLAAQHFEGGRQSEAAILINRQLEKCFKDSKCVDLESLCIVADKKV 129
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +RID++I+++ GNLVD A+IA LA+L+ F RP+ + GE E+I+HP E++ LPL
Sbjct: 130 WNLRIDINIINHDGNLVDCASIATLAALMHFHRPDVTSTGE---EIIIHPASEKDFLPLT 186
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ--KPGGEGVLQ 252
+ H P+ ++F F S + ++DPT+ EE V V ++T +N+ ++C++ ++
Sbjct: 187 LFHYPVCISFITFKSGN-TIMDPTYIEEKVGVAELTLGVNSYRELCSLHFDYLTKTMTVK 245
Query: 253 SVIMQCLRLASRMASDITKKIKDAV 277
VI A+ A+ + ++IK+AV
Sbjct: 246 DVISAVSNDAANYATKLVQQIKEAV 270
>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
kodakarensis KOD1]
gi|73919277|sp|Q5JIR7.1|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 272
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 162/259 (62%), Gaps = 12/259 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RIDGR+ +YR L IK + +GS+ V+LG T ++ + +L +P+ D P+ G
Sbjct: 19 LREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E+A+EL R+VDRG+RES+AVD E L ++ GKLV I I
Sbjct: 79 VITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+GGNL+DA+ I A+A+LL+ + P+ + E ++E++ +E EPLP ++H+
Sbjct: 139 DVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEIL----DEYEPLP--VNHV 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI VTF + +V+DP+ EE VM G++T T + G + A QK +M
Sbjct: 193 PIPVTFAKIGNS--IVVDPSLDEERVMDGRLTITTDETGHISAAQKGEAGAFKMEEVMYA 250
Query: 259 LRLASRMASDITKKIKDAV 277
L +A + ++I +K+ AV
Sbjct: 251 LEVALKKGNEIREKVLKAV 269
>gi|226293456|gb|EEH48876.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
Pb18]
Length = 300
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 155/268 (57%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE+ FI AL IR+DGR + R L + FG E G ++QLG+T ++ ++ ++ +
Sbjct: 7 ISANEREFILEALHKNIRLDGRALDQLRPLMVSFGNECGHVKLQLGKTSVVVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ +R N+G ++ E + MA P+F+TG SE +L RI+DR +R S A+DTESLC+ A
Sbjct: 67 PHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRIIRRSNALDTESLCIAA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W IR D+H++D+ G LVD+ +A + +LL FR PE + + V V PEER P
Sbjct: 127 GKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPEAIVR---EGRVTVFSPEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL + LP++ TF + ++V+D EEAV G + LN G++ K G
Sbjct: 184 SPLNLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGNLIIALNKTGELALYIKSDGTPA 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++ C +A ++++K I +E
Sbjct: 244 DPLSMISCSNVALAKVNEMSKFISTKLE 271
>gi|308502001|ref|XP_003113185.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
gi|308265486|gb|EFP09439.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
Length = 432
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
LT+ EK I AL SG R D R+ E+R + + G E G++ +G T +M V+ Q+ +
Sbjct: 6 LTICEKAVILEALRSGKRFDFRSLEEFRDVKLVVGSEVGTAICTIGNTKVMAAVSAQIAE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPN+G ++I + SPMA+ + E R +EL R+++ +R+SR +D ESLC+ A
Sbjct: 66 PSSMRPNKGVINIDVDLSPMANVANEHDRLGSKGMELIRLLELIIRDSRCIDVESLCIRA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G +W +R+D+ ILD G+L+D A +AA+ +L F+RP SL L ++ E+ P
Sbjct: 126 GSEIWKVRVDVRILDEDGSLLDCACLAAITALQHFKRPNVSLEAHHTL---IYSEYEKAP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I+H+PI T G ++VIDPT E A + G + N +VCA+ + +
Sbjct: 183 VPLNIYHMPICTTIGLLDKGQMVVIDPTEKEAACLDGSIVVACNKRREVCALHQSTNLVL 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
I +C++LA A +T + ++ ER+
Sbjct: 243 TTKQIERCVKLAMARAEALTAVVSSIIKEDRQERS 277
>gi|260950159|ref|XP_002619376.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
gi|238846948|gb|EEQ36412.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
Length = 305
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 166/287 (57%), Gaps = 16/287 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
L+ NE+ +I AL G R+DGR E RK I + E G EV+LG T + V+ ++
Sbjct: 7 LSTNERSYIFNALKKGFRLDGRALDEMRKPLITLSKTEYGYVEVELGDTKLAVRVSCEIG 66
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P+ DRP EGT +I TE S MA P FE G+ S+ V + R++++ +R S A+D ESLCV+
Sbjct: 67 KPFEDRPFEGTFTINTEISSMASPMFENGKNSDEEVLISRLIEKAVRRSNALDLESLCVI 126
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG+ VW IR D++ L+ G L+DA+ I + +L F++P+ S+ G D V ++ +ER+
Sbjct: 127 AGEKVWHIRADINFLNYDGGLIDASCIGVMTALQHFKKPDVSIQGTD---VTIYSFDERQ 183
Query: 190 PLPLIIHHLPIAVTFGFFS------------SESLLVIDPTHHEEAVMVGKMTATLNANG 237
P+PL I H+PI VT+ FF+ ++ + ++D EEA+ G + T+N N
Sbjct: 184 PVPLSILHVPICVTYSFFNPGDKEENIKGALNQEIAIMDANSKEEAIRDGSLVITMNKNR 243
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
++ + K GG + ++ + + +A +T +IK ++ ER
Sbjct: 244 ELIQLSKNGGLPIDGVALLSLAQNSFAVAEKLTDQIKALLKEDEEER 290
>gi|67539882|ref|XP_663715.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|40738896|gb|EAA58086.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|259479699|tpe|CBF70162.1| TPA: exosome complex endonuclease 2/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G08860)
[Aspergillus nidulans FGSC A4]
Length = 295
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 153/275 (55%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ E+ FI AL G+R+DGR + R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSIAERDFILDALREGVRLDGRGADQLRPLTLSFGEEYGHVKVQLGKTSLVVRISAEVAK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I E + M P++E GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PHDDRPFDGIFNIAMELTAMGSPAWENGRQGDLETYVTNVLDRVIRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W IR D+HI D GNL+DA+ I +A L FRRP+ + D +VIV+ +ER P
Sbjct: 127 GVSCWTIRADVHITDYDGNLIDASCIGVMAGLQHFRRPDAVV---KDGQVIVYGLDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL I H P++VTF F L ++D T EE + +N GDVC + K G V
Sbjct: 184 APLNITHKPLSVTFHTFDDGKLAILDATRKEEQASEADVVIGMNNAGDVCYLSKFQGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + LA I I A++ +R+
Sbjct: 244 DALVFITKTSLALEKVKYINGIIDKALQADLAKRS 278
>gi|225684062|gb|EEH22346.1| exosome component 9 [Paracoccidioides brasiliensis Pb03]
Length = 295
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 155/268 (57%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE+ FI AL IR+DGR + R L + FG E G ++QLG+T ++ ++ ++ +
Sbjct: 7 ISANEREFILEALHKNIRLDGRALDQLRPLMVSFGNECGHVKLQLGKTSVVVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ +R N+G ++ E + MA P+F+TG SE +L RI+DR +R S A+DTESLC+ A
Sbjct: 67 PHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRIIRRSNALDTESLCIAA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W IR D+H++D+ G LVD+ +A + +LL FR PE + + V V PEER P
Sbjct: 127 GKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPEAIV---REGRVTVFSPEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL + LP++ TF + ++V+D EEAV G + LN G++ K G
Sbjct: 184 SPLNLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGNLIIALNKTGELALYIKSDGTPA 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++ C +A ++++K I +E
Sbjct: 244 DPLSMISCSNVALAKVNEMSKFISTKLE 271
>gi|167518071|ref|XP_001743376.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778475|gb|EDQ92090.1| predicted protein [Monosiga brevicollis MX1]
Length = 330
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 165/288 (57%), Gaps = 20/288 (6%)
Query: 6 ANTWRLTVNEKRFIETALSSG-----IRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
A W + +EK F+ AL S R+DGR+ E+R+ F + G E+ LG+T +
Sbjct: 3 ARPW--STSEKEFVLNALDSADEDEPARLDGRHRHEHRECKFTFHQTPGFVELALGKTRV 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESR 119
M +T ++V P+ D +EG + A ++ R S E VEL R+++R +E+R
Sbjct: 61 MAQLTCEVVAPHPDYDSEGFFRFNVSIAAGAGIAYAAQRSSSEEIVELTRLLERAFKEAR 120
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
A+D+ESLC++ G+ VW +R+D+ +L+NGGN+ D +AALA +LTFRRP SL G +
Sbjct: 121 AIDSESLCIVKGEKVWEVRVDVTVLENGGNMADGVCLAALAGILTFRRPYVSLTGG---Q 177
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V +H EE EP+ L +HH PIAVT + L++DPT EEAV G +T LN +G++
Sbjct: 178 VKIHSLEEHEPVSLSVHHRPIAVTIASIAGGRHLLVDPTSLEEAVAEGCITVCLNGHGEI 237
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALR 287
C+I GG + + + L+LA R K AV + E+A+R
Sbjct: 238 CSINSGGGTPLSPEQMKELLQLAKR---------KHAVFNHTLEQAMR 276
>gi|50305471|ref|XP_452695.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641828|emb|CAH01546.1| KLLA0C11099p [Kluyveromyces lactis]
Length = 305
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 159/287 (55%), Gaps = 16/287 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ E +FI AL R+DGR+ ++R + I+ G G V +G T + +
Sbjct: 1 MAKDIEISNAESKFILEALKLKQRLDGRSYDQFRDVKIEIGEAYGDVTVTMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ ++ QPY DRP EG I TE +PMA FE G + E V + R++++ +R S A+D
Sbjct: 61 SCEIAQPYEDRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEKAVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG W++R D+H LD G L+DA+ IA +A LL F++P+ ++ GE V VH
Sbjct: 121 EGLCIIAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLHFKKPDVTVLGE---RVTVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSES------------LLVIDPTHHEEAVMVGKMTA 231
P +EREP+ L + H+PI VTF FF+ + + +ID + EE + G +T
Sbjct: 178 PIDEREPVSLGVLHVPICVTFSFFNPDDTEENIKGEDNAEISIIDASLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
TLN N +V I K GG + ++ C A + IT +I V+
Sbjct: 238 TLNKNREVVQISKAGGLPMEALSLIDCCHKAYGIVEKITDQIHRVVK 284
>gi|169783852|ref|XP_001826388.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus oryzae RIB40]
gi|238493679|ref|XP_002378076.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|83775132|dbj|BAE65255.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220696570|gb|EED52912.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|391869452|gb|EIT78650.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Aspergillus
oryzae 3.042]
Length = 292
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ E+ FI AL +R+DGR ++R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSIAERDFILNALREDVRLDGRQADQFRPLNVSFGEEYGHVKVQLGKTSLIVRISSEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I E + M P++E GR + + ++DR +R S A+DTESLCVL
Sbjct: 67 PHDDRPFDGIFTIALELTAMGSPAWENGRQGDLETYVSNVLDRVIRHSNALDTESLCVLK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W +R D+HI + GNL+DAA I +A L FRRP+ + D +VIV+ +ER P
Sbjct: 127 GVSCWNVRADVHITNYDGNLIDAACIGVMAGLQHFRRPDAVV---KDGQVIVYGVDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L I H P++VTF F +++D T EE + LN GDVC + K G V
Sbjct: 184 VALNITHKPLSVTFHTFDEGKRVIVDATRKEEQASEADVVMGLNNAGDVCYLSKFSGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + +A +I I A++ +RA
Sbjct: 244 SAMVFVNKSSVALEKVKEINGIIDKALQADLAKRA 278
>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
Length = 521
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 155/261 (59%), Gaps = 2/261 (0%)
Query: 28 RIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEF 87
RIDGR E+R++ + G E GS V LG+T ++ V+ LV+P R N GT+ + +
Sbjct: 151 RIDGRKCDEFREVKVIVGSELGSCLVMLGETKVLAQVSCSLVEPSTVRGNMGTVEVHVDM 210
Query: 88 SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG 147
SPMA P +E GR +EL RI++ R S +D ESLC+ K VW IRID+H+L +
Sbjct: 211 SPMASPDYEDGRLGSKGLELMRILELLYRNSGVIDLESLCLRTFKQVWQIRIDVHVLASD 270
Query: 148 GNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF 207
G+LVD A IA+L +L FRRP+ S+ D + + H +E+ P+ L I+H+P+ +TFG
Sbjct: 271 GSLVDCACIASLTALAHFRRPDVSVLP-DSIIIASHGNDEKMPISLNIYHMPVCITFG-I 328
Query: 208 SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
+S+ +IDPT EE + G + N ++CA+ + G + + +I+QC+ A + A
Sbjct: 329 TSDGQNIIDPTDKEEQCLRGSLIVATNKRHEICALHQSGNFLLSEQLIVQCVDRAIQRAV 388
Query: 268 DITKKIKDAVETYNTERALRK 288
D+++ I + N +R+ R+
Sbjct: 389 DVSELIYSVIADDNLKRSNRQ 409
>gi|225718348|gb|ACO15020.1| Exosome complex exonuclease RRP45 [Caligus clemensi]
Length = 366
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 156/261 (59%), Gaps = 11/261 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI AL G R+DGR E R + I GRE G++EV LG T ++ + + +P
Sbjct: 7 ERSFILAALREGKRLDGRKVDERRDICIHLGREWGTAEVSLGDTRVLASTSCSVGEPRSV 66
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L T P++ S T E+ VEL R+++R L+ES+ VD ESLC+ + + V
Sbjct: 67 RPNEGILK--THIEPLSKRSMTT----EALVELNRVIERVLKESKCVDMESLCISSEEKV 120
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W I +++ +L + GN D A+IA LA+L F+RP+ +L G+ ++ +HP R+P+PL
Sbjct: 121 WIISLEMTLLSDAGNAADCASIAGLAALCHFKRPDVTLKGD---KIRIHPFYGRDPVPLA 177
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH P+ TF + SLL DP+ EEAVM GK+ +N ++CA+ G + V +++
Sbjct: 178 IHHHPVLSTFALYGRVSLL--DPSREEEAVMDGKVVPGMNPYREICALHLAGQKLVDKAL 235
Query: 255 IMQCLRLASRMASDITKKIKD 275
++Q A+ A +I ++K+
Sbjct: 236 VLQLASKAAEEAKNIVNQLKN 256
>gi|121698408|ref|XP_001267812.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119395954|gb|EAW06386.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 292
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ E+ FI AL +R+DGR + R L + FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSIAERDFILNALREDVRLDGRQADQLRPLKVTFGEEYGHVKVQLGKTSLIVRISSEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P DRP +G +I E + M P+++ GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PRDDRPFDGLFAIALELTAMGSPAWDNGRQGDLEAYVAHVLDRVVRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W+IR D+HI D GNL+DAA I +A L FRRP+ + D +VIV+ +ER P
Sbjct: 127 GVSCWSIRADIHITDYDGNLIDAACIGVMAGLQHFRRPDAVV---KDGQVIVYGLDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P++VTF F +++D T EE + +N GDVC + K G V
Sbjct: 184 VPLNITHKPLSVTFHTFDEGKRVILDATRKEEQASEADVVIGVNNAGDVCFVSKFSGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + +A +I I A++T +RA
Sbjct: 244 DALVFVTKSSVALEKVKEINGIIDKALQTDLAKRA 278
>gi|240282302|gb|EER45805.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H143]
Length = 293
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 143/237 (60%), Gaps = 3/237 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE FI AL +R+DGR + R L++ FG E G ++QLG+T ++ ++ ++ +
Sbjct: 7 ISANEHAFILEALHKNVRLDGRALDQLRPLTVSFGDEYGHVKLQLGKTSVVVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R N+G ++ E + MA P++ETGR SE +L R +DR +R S A+DTESLC+ A
Sbjct: 67 PRSERENDGIFTVSMELNDMASPAYETGRQSELESQLVRTLDRIIRRSNALDTESLCIAA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W +R D+H++D+ G LVD+ +A + LL FR PE + + V V+ PEER P
Sbjct: 127 GKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVV---REGRVTVYRPEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL + LP++ TF + ++V+D T EEAV G + L+ G++ KP G
Sbjct: 184 SPLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALDKTGEIALYTKPDG 240
>gi|341897277|gb|EGT53212.1| CBN-EXOS-9 protein [Caenorhabditis brenneri]
Length = 432
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 157/275 (57%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+T+ EK I AL SG R D R E+R++ + G E G++ +G T ++ V+ Q+ +
Sbjct: 6 VTICEKALILEALRSGKRFDFRGLEEFREVKLVVGAEIGTAICTIGNTKVLAAVSAQIAE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP++G ++I + SPMA+ + E R +EL R+++ +R+SR +D ESLC+ A
Sbjct: 66 PSSMRPHKGVINIDVDLSPMANYANEHDRLGSRGMELIRLLELIIRDSRCIDVESLCIRA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK +W +R+D+ ILD+ G+L+D A +AA+ +L F+RP +L L ++ E+ P
Sbjct: 126 GKEIWKVRVDVRILDDDGSLLDCACLAAITALQHFKRPNVTLEPHHTL---IYSEYEKAP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I+H+PI T G ++VIDPT E A + G + N +VCA+ + +
Sbjct: 183 VPLNIYHMPICTTIGLLDKGQMVVIDPTDKEAACLDGSIVVACNKRREVCALHQSTNLVL 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
I +C++LA A +T + D V+ ER+
Sbjct: 243 STKQIERCVKLAMSRAEALTAVVSDVVKQDQRERS 277
>gi|225559371|gb|EEH07654.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus G186AR]
Length = 293
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 143/237 (60%), Gaps = 3/237 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE+ FI AL +R+D R + R L++ FG E G ++QLG+T ++ ++ ++ +
Sbjct: 7 ISANERAFILEALHKNVRLDSRALDQLRPLTVSFGDEYGHVKLQLGKTSVVVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R N+G ++ E + MA P++ETGR SE +L R +DR +R S A+DTESLC+ A
Sbjct: 67 PRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRIIRRSNALDTESLCIAA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W +R D+HI+D+ G LVD+ +A + LL FR PE + + V V+ PEER P
Sbjct: 127 GKNCWHVRADVHIVDSDGGLVDSCCLAIMTGLLHFRLPEAVVR---EGRVTVYRPEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL + LP++ TF + ++V+D T EEAV G + L+ G++ KP G
Sbjct: 184 SPLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALDKTGEIALYTKPDG 240
>gi|71001078|ref|XP_755220.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66852858|gb|EAL93182.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
gi|159129307|gb|EDP54421.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 292
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 156/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ E+ FI AL +R+DGR+ + R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSIAERDFILNALREDVRLDGRHADQLRPLTVTFGEEYGHVKVQLGKTGLIVRISSEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P DRP +G +I E + M P+++ GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PRDDRPFDGIFTIALELTAMGSPAWDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W+IR D+H+ D GNLVDAA I +A L FRRP+ + D +VIV+ +ER P
Sbjct: 127 GVSCWSIRADVHVTDYDGNLVDAACIGVMAGLQHFRRPDAVV---KDGQVIVYGLDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P++VTF F +++D T EE + +N GDVC + K G V
Sbjct: 184 VPLNITHKPLSVTFHTFDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFVSKFSGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + +A +I I A++ + +R+
Sbjct: 244 DALVFVSKSSVALEKVKEINAIIDKALQADSAKRS 278
>gi|67474914|ref|XP_653189.1| exosome complex exonuclease [Entamoeba histolytica HM-1:IMSS]
gi|56470120|gb|EAL47803.1| exosome complex exonuclease, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407042424|gb|EKE41318.1| exosome complex exonuclease, putative [Entamoeba nuttalli P19]
gi|449703501|gb|EMD43942.1| exosome complex exonuclease, putative [Entamoeba histolytica KU27]
Length = 265
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 153/260 (58%), Gaps = 6/260 (2%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNE 78
+E L GIRID R E+R++S RE GS E +G + +G + V P R RP++
Sbjct: 4 VEGLLQKGIRIDARRLDEFREVSF-VCREPGSVETHIGNSKALGECVVEPVCPGRSRPDQ 62
Query: 79 GTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIR 138
G +I F MA+P+F R +E+G++V+RGL +RA+D + L ++ GKLVW I
Sbjct: 63 GIFNIRVNFLEMANPNFYDSRGPRDLIEIGKVVERGLLSTRAIDVDGLVIIRGKLVWKIT 122
Query: 139 IDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHL 198
+ +HI+++ GNL+D +I A+++LLT R E + G D V + PEER+P+PL IHH+
Sbjct: 123 VCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTD---VKILTPEERKPVPLAIHHI 179
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI V+FG S + ++DP+ EE+V +T +N G+VCA+QK G + VI +C
Sbjct: 180 PITVSFGITES-GVPLLDPSEREESVCKSHLTIAINKEGEVCAVQK-SGTPISMKVIQKC 237
Query: 259 LRLASRMASDITKKIKDAVE 278
A A + K I V+
Sbjct: 238 CDTALSKAKMLIKFISTQVQ 257
>gi|430811931|emb|CCJ30637.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 250
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 153/268 (57%), Gaps = 36/268 (13%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++NEK FI AL++ +R+DGR +R L + FG G E+ LG+T + + +L
Sbjct: 7 LSLNEKEFILEALNNNLRLDGRGFDVWRDLKLNFGNSYGHVELSLGKTSFIYLIFFRL-- 64
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
E T+S I+D+ +R S +D ESLC++
Sbjct: 65 -----SEEMTVS--------------------------SIIDKAIRRSHMLDKESLCIIY 93
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W+IR D+H LD+ GNL+DA +IA +A+L F++P ++ GE +VIVH EER P
Sbjct: 94 GKQCWSIRADVHYLDHDGNLIDATSIAVVAALYHFKKPVVTVEGE---KVIVHSIEERVP 150
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PLI+ H+PI++TF FF+ + ++D T EE + G M TLN N ++C I K GG +
Sbjct: 151 VPLILTHIPISITFSFFNENQISLMDTTLQEEKLREGSMVITLNKNKEICQISKVGGVIL 210
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
S I++CL+LAS+ A +IT + + ++
Sbjct: 211 QTSHILKCLQLASKKALEITNYLNEKLK 238
>gi|119480721|ref|XP_001260389.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408543|gb|EAW18492.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 292
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 156/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++ E+ FI AL +R+DGR+ + R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSIAERDFILNALREDVRLDGRHADQLRPLTVTFGEEYGHVKVQLGKTSLIVRISSEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P DRP +G +I E + M P+++ GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PRDDRPFDGIFTIALELTAMGSPAWDNGRQGDLEAYVAHVLDRLVRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W+IR D+H+ D GNL+DAA I +A L FRRP+ + D +V+V+ +ER P
Sbjct: 127 GVSCWSIRADVHVTDYDGNLIDAACIGVMAGLQHFRRPDAVV---KDGQVVVYGLDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I H P++VTF F +++D T EE + +N GDVC + K G V
Sbjct: 184 VPLNITHKPLSVTFHTFDEGKRVILDATRKEEQASEADVVFGMNNAGDVCFVSKFSGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + +A +I I A++ + +R+
Sbjct: 244 DALVFVSKSSVALEKVKEINAIIDKALQADSAKRS 278
>gi|325088441|gb|EGC41751.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H88]
Length = 293
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 143/237 (60%), Gaps = 3/237 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE+ FI AL +R+DGR + R L++ F E G ++QLG+T ++ ++ ++ +
Sbjct: 7 ISANERAFILEALHKNVRLDGRALDQLRPLTVSFSDEYGHVKLQLGKTSVVVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R N+G ++ E + MA P++ETGR SE +L R +DR +R S A+DTESLC+ A
Sbjct: 67 PRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRIIRRSNALDTESLCIAA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W +R D+H++D+ G LVD+ +A + LL FR PE + + V V+ PEER P
Sbjct: 127 GKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPEAVVR---EGRVTVYRPEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PL + LP++ TF + ++V+D T EEAV G + L+ G++ KP G
Sbjct: 184 SPLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGSLIIALDKTGEIALYTKPDG 240
>gi|391334104|ref|XP_003741448.1| PREDICTED: exosome complex component RRP45-like [Metaseiulus
occidentalis]
Length = 294
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/255 (39%), Positives = 155/255 (60%), Gaps = 8/255 (3%)
Query: 21 TALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGT 80
L R D R E RKL I + E GS V LG T ++ + + +P RPNEG
Sbjct: 18 VVLEQTTRADDRTHREPRKLKIAYLSEPGSCIVSLGDTKVLAQCSAHICEPKPTRPNEGR 77
Query: 81 LSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRID 140
L+I + SP+A S + R E V +GR++DR +R+S VD E+LC++AG+ W +R+D
Sbjct: 78 LAIQFDVSPVA-ASLQDSRTMEYRVGIGRLLDRVIRDSECVDLENLCLVAGERAWEVRVD 136
Query: 141 LHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPI 200
+ +++ GGN+ + A+IA++A+L F+RPE ++ G+ E+ VHP E EP+PL I+H P
Sbjct: 137 VVLMNLGGNVAECASIASVAALAHFKRPEVTIVGK---EMTVHPVTEHEPVPLHIYHYPY 193
Query: 201 AVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS-VIMQCL 259
++F FF +E++LV DP+ EEA G + +N++ +VCA+Q+ G VL + I C+
Sbjct: 194 CLSFAFFETETILV-DPSFEEEACCDGILIVGVNSHEEVCALQQRG--SVLTADQIELCI 250
Query: 260 RLASRMASDITKKIK 274
+LA A IT IK
Sbjct: 251 KLACSRAKLITDTIK 265
>gi|225710860|gb|ACO11276.1| Exosome complex exonuclease RRP45 [Caligus rogercresseyi]
Length = 364
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 162/270 (60%), Gaps = 11/270 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI AL G R+DGR E R ++I GRE G++EV+LG T ++ + + +P
Sbjct: 7 ERSFILAALQEGKRLDGRKLDERRDINIHLGREWGTAEVRLGDTRVLASTSCSVGEPRSV 66
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L T P++ S T E+ VEL R+++R L+ES+ VD ESLC+ + + V
Sbjct: 67 RPNEGILK--THIEPLSKRSIST----ETLVELNRVIERVLKESKCVDMESLCISSEEKV 120
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W I +++ +L++ GN D A+IA LA+L F+RP+ +L G+ ++ +HP ER+P+ L
Sbjct: 121 WIISLEMTLLNDAGNAADCASIAGLAALCHFKRPDVTLKGD---KIRIHPFYERDPVSLA 177
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
IHH P+ TF + +LL DP+ EE VM GK+ +N ++CA+ G + V +++
Sbjct: 178 IHHHPVLSTFALYGRVALL--DPSKEEEIVMDGKVVLGMNPYREICALHLAGQKLVDKTL 235
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTER 284
++Q A+ + I ++K+A+ ++ R
Sbjct: 236 VLQLASKAAEESKRIVDQLKNALSRDSSAR 265
>gi|242003305|ref|XP_002422688.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
gi|212505510|gb|EEB09950.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
Length = 349
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 159/268 (59%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+ FI A S R+DGR +R L I FG++ G V LG++ ++ V ++ +
Sbjct: 6 LSNCERNFILKAASECKRLDGRKLEGFRDLKIHFGKDWGLCYVSLGESKVVSQVKCEIQE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RPNEG + E S MA P E GR S + + R++D+ L +S+A+D ESLC++A
Sbjct: 66 PQAVRPNEGLFFMNVELSLMASPYIEPGRASNLSTHIQRLLDKCLYDSKAIDLESLCIVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
VWAI+ID+H+L++ G+LVD A+I+ALA+L F+RP+ + GE E+ VH ER+P
Sbjct: 126 EDKVWAIKIDVHVLNHDGSLVDCASISALAALAHFKRPDVTTDGE---EIKVHSTAERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL +HH PI V+F ++ + DPT EE V +T +NA ++C + G +
Sbjct: 183 IPLTLHHYPICVSFALLNNSENIFADPTEIEERVSDANLTFGINAYKEICCLHLGGTALI 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
+IM C A+ A ++ + I +A++
Sbjct: 243 KPKLIMTCSLKAAARAKEVVELINEAIK 270
>gi|207346511|gb|EDZ72988.1| YDR280Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 212
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 4/207 (1%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSE 210
P EREP+PL I H+PI VTF FF+ +
Sbjct: 178 PVNEREPVPLGILHIPICVTFSFFNPQ 204
>gi|295664845|ref|XP_002792974.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278495|gb|EEH34061.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 295
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 154/268 (57%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ NE+ FI AL IR+DGR + R L + FG E G ++QLG+T ++ ++ ++ +
Sbjct: 7 ISANERAFILDALHKNIRLDGRALDQLRPLMVSFGNECGHVKLQLGKTSVVVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ +R N+G ++ E + M P+F+TG SE +L RI+DR +R S A+DTESLC+ A
Sbjct: 67 PHPERENDGIFTVVVELNDMTSPAFKTGWQSEMETQLARILDRIIRRSNALDTESLCIAA 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W IR D+H++D+ G LVD+ +A + +LL FR E + + VIV PEER P
Sbjct: 127 GKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLSEAIV---REGRVIVFSPEERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
PL + LP++ TF + ++V+D EEAV G + LN G++ K G
Sbjct: 184 SPLNLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSDGNLIIALNKTGELALYIKSDGTPA 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
++ C +A ++++K I +E
Sbjct: 244 DPLSMISCSNVALAKVNEMSKFISTKLE 271
>gi|358369855|dbj|GAA86468.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 292
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+V E+ FI AL +R+DGR + R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSVTERDFILNALREDVRLDGRGFDQLRPLNVSFGEEYGHVKVQLGKTSLIVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I E + M P+++ GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PHDDRPFDGLFTIAMELTAMGSPAWDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W+IR D+H+ D GNL+DAA I +A L FRR + + D +VIV+ +ER P
Sbjct: 127 GVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVV---KDGQVIVYGLDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L I H P++VTF F ++ID T EE + +N GDVC + K G V
Sbjct: 184 VALNITHKPLSVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFVSKFSGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + +A +I I A++ ++RA
Sbjct: 244 DAMVFVDKTSVALEKVKEINATIDKALQADLSKRA 278
>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
3638]
gi|29336823|sp|Q8U0M0.1|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
Length = 277
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 159/270 (58%), Gaps = 12/270 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
+ +I L RID R +YR + ++ G + +GS+ V+LG T ++ + L +P+
Sbjct: 12 RDYILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPF 71
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G ++ E P+A P+FE G P E A+EL R++DRG+RESRA++ E + + GK
Sbjct: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGK 131
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPL 191
+V + ID+H+LD+ GNL+DA I A+A+LL R P+ E ++E++ EE+EPL
Sbjct: 132 IVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEIL----EEKEPL 187
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P + +PI+VTF + LV+DPT EE +M G++T T + G + A+QK G
Sbjct: 188 P--VEKIPISVTFAKIG--NYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSEGGAFK 243
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVETYN 281
+M + A + A +I K I +A+E N
Sbjct: 244 LEEVMYAVETAFKKAEEIRKIILNALEKAN 273
>gi|167392472|ref|XP_001740171.1| exosome complex exonuclease RRP45 [Entamoeba dispar SAW760]
gi|165895849|gb|EDR23438.1| exosome complex exonuclease RRP45, putative [Entamoeba dispar
SAW760]
Length = 244
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 147/240 (61%), Gaps = 6/240 (2%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNE 78
+E L GIRID R E+R++S RE GS E +G + +G + V P R RP++
Sbjct: 4 VEGLLQKGIRIDARKLDEFREVSF-VCREPGSVETHIGNSKALGECVVEPVSPGRSRPDQ 62
Query: 79 GTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIR 138
G +I F MA+P+F R +E+G++V+RGL +RA+D + L ++ GKLVW I
Sbjct: 63 GIFNIRVNFLEMANPNFYDSRGPRDLIEIGKVVERGLLSTRAIDVDGLVIIRGKLVWKIT 122
Query: 139 IDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHL 198
+ +HI+++ GNL+D +I A+++LLT R E + G D V + PEER+P+PL IHH+
Sbjct: 123 VCVHIINDCGNLMDLVSITAISALLTAVRREVQICGTD---VKILTPEERKPVPLAIHHI 179
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI V+FG S + ++DP+ EE+V ++T +N G+VCA+QK G + VI +C
Sbjct: 180 PITVSFGITDS-GVPLLDPSEREESVCKSRLTIAINKEGEVCAVQK-SGTPISMKVIQRC 237
>gi|397652060|ref|YP_006492641.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
gi|393189651|gb|AFN04349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
Length = 277
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 158/270 (58%), Gaps = 12/270 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
+ +I L RID R +YR + ++ G + +GS+ V+LG T ++ + L +P+
Sbjct: 12 RDYILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPF 71
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G ++ E P+A P+FE G P E A+EL R++DRG+RESRA++ E + + GK
Sbjct: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGK 131
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPL 191
+V + ID+H+LD+ GNL+DA I A+A+LL R P+ E ++E++ EE+EPL
Sbjct: 132 IVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEIL----EEKEPL 187
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P + +PI VTF + LV+DPT EE +M G++T T + G + A+QK G
Sbjct: 188 P--VEKIPIPVTFAKIG--NYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSEGGAFK 243
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVETYN 281
+M + A + A +I K I +A+E N
Sbjct: 244 LEEVMYAVETAFKKAEEIRKIILNALEKAN 273
>gi|115443084|ref|XP_001218349.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188218|gb|EAU29918.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 294
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 154/277 (55%), Gaps = 5/277 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV--TGQL 68
L+V E+ FI AL +R+DGR P + R L++ FG E G +VQLG+T + V + ++
Sbjct: 7 LSVAERDFILNALRQNVRLDGREPDQLRPLTVSFGEEYGHVKVQLGKTRVSLIVRISSEV 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
+P DRP +G +I E + M P+++ GR + + ++DR +R S A+DTESLC+
Sbjct: 67 TKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGDLETYVTNVLDRVVRHSNALDTESLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
L G W++R D+HI D GNL+DAA I +A L FRRP+ + D +VIV+ +ER
Sbjct: 127 LKGVSCWSVRADVHITDYDGNLIDAACIGVMAGLQHFRRPDAVV---KDGQVIVYGVDER 183
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P+ L I H P++VTF F + +V+D T EE + +N GDVC + K G
Sbjct: 184 VPVALNITHKPLSVTFHTFDEGNHVVLDATRKEEQASEADVIIGMNNAGDVCYMSKFSGS 243
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V V ++ +A +I I A++ RA
Sbjct: 244 PVDAMVFVRKSAVAQDKVKEINGIIDKALQADLARRA 280
>gi|350636872|gb|EHA25230.1| hypothetical protein ASPNIDRAFT_49678 [Aspergillus niger ATCC 1015]
Length = 292
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+V E+ FI AL +R+DGR + R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSVTERDFILNALREDVRLDGRGFDQLRPLNVSFGEEYGHVKVQLGKTSLIVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I E + M P+++ GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PHDDRPFDGLFTIAMELTAMGSPAWDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W+IR D+H+ D GNL+DAA I +A L FRR + + D +VIV+ +ER P
Sbjct: 127 GVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVV---KDGQVIVYGLDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L I H P++VTF F ++ID T EE + +N GDVC + K G V
Sbjct: 184 VALNITHKPLSVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFVSKFSGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + +A +I I A++ ++RA
Sbjct: 244 DAMVFVDKTSVALEKVKEINAIIDKALQADLSKRA 278
>gi|145246552|ref|XP_001395525.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus niger CBS 513.88]
gi|134080243|emb|CAK97146.1| unnamed protein product [Aspergillus niger]
Length = 292
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 154/275 (56%), Gaps = 3/275 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+V E+ FI AL +R+DGR + R L++ FG E G +VQLG+T ++ ++ ++ +
Sbjct: 7 LSVTERDFILNALREDVRLDGRGFDQLRPLNVSFGEEYGHVKVQLGKTSLIVRISAEVTK 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRP +G +I E + M P+++ GR + + ++DR +R S A+DTESLC+L
Sbjct: 67 PHDDRPFDGLFTIAMELTAMGSPAWDNGRQGDFETYVTNVLDRVVRHSNALDTESLCILK 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W+IR D+H+ D GNL+DAA I +A L FRR + + D +VIV+ +ER P
Sbjct: 127 GVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQHFRRQDAVVK---DGQVIVYRLDERVP 183
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ L I H P++VTF F ++ID T EE + +N GDVC + K G V
Sbjct: 184 VALNITHKPLSVTFHTFDEGKRVIIDATRKEEQAAEADVVIGINNAGDVCFVSKFSGSPV 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
V + +A +I I A++ ++RA
Sbjct: 244 DAMVFVDKTSVALEKVKEINAIIDKALQADLSKRA 278
>gi|323355606|gb|EGA87426.1| Rrp45p [Saccharomyces cerevisiae VL3]
Length = 212
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 128/206 (62%), Gaps = 4/206 (1%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSS 209
P EREP+PL I H+PI VTF F S
Sbjct: 178 PVNEREPVPLGILHIPICVTFFFLQS 203
>gi|25144570|ref|NP_741217.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
gi|351062706|emb|CCD70741.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
Length = 434
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 173/335 (51%), Gaps = 7/335 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+T EK I AL G R D R+ E+R + + G E G++ +G T +M V+ ++ +
Sbjct: 6 VTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTKVMAAVSAEIAE 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP++G ++I + SPMA+ + E R +EL R+++ +R+SR +D E+LC+ A
Sbjct: 66 PSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK +W IR+D+ ILD G+L+D A +AA+ +L FRRP +L L ++ E+ P
Sbjct: 126 GKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTL---IYSEYEKAP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL I+H+PI T G ++VIDPT E A + G + N +VCA+ + +
Sbjct: 183 VPLNIYHMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLIL 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK----IKRHPTSITLDGSVNLKE 306
I +C++LA A +T + D ++ ER+ K S+ L
Sbjct: 243 STKQIERCVKLAMARAEALTAVVSDVIKQDQIERSAFKRPDGFAITTPSLILTAGTTASR 302
Query: 307 KLNEPSGHNVVNELSRKHLEKPRLASAENASSPGN 341
++ P +++ L +P + EN S G+
Sbjct: 303 QIRAPVIKTEPESFTQRSLYQPSVILNENPLSVGS 337
>gi|154301511|ref|XP_001551168.1| hypothetical protein BC1G_10425 [Botryotinia fuckeliana B05.10]
Length = 244
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 141/230 (61%), Gaps = 13/230 (5%)
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
+T ++ P+ DR +G +I TE SPMA P+FET RP+E V L R++++ LR S A+DT
Sbjct: 10 ITAEVTSPFPDRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKTLRRSAALDT 69
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
ESLC++AG+ W++R D+HIL + GNL+DA+ IA +A+L FR+P+ S GE V V+
Sbjct: 70 ESLCLIAGQKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPDTSTEGET---VTVY 126
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF--SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
EREP+PL + H P+ VTF F+ E ++D EE + G T ++N +G+VC
Sbjct: 127 TLAEREPVPLSLLHFPLCVTFSFYGKGQEQTRLVDTNLMEEQLREGSCTISMNRHGEVCQ 186
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKR 291
I K GG V ++QC +A +K+KD + Y T+R +K+
Sbjct: 187 IAKLGGIAVDAVELLQCTNIA-------LEKVKD-ISAYITKRLQEDLKK 228
>gi|303312521|ref|XP_003066272.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105934|gb|EER24127.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 292
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A L+ NE+ FI AL + +R+DGR ++R L++ FG E G +VQLG+T ++ +
Sbjct: 1 MARDTELSANERSFILEALHNNVRLDGRALDQFRPLNLTFGDEYGHVKVQLGRTSVIVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ ++ P +R ++G ++ E + MA P FETGR S+ +L R +D+ +R S A+DTE
Sbjct: 61 SAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKIVRRSNALDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G W +R D+HI+D G LVD +A +A LL FR PE ++ D +V V+
Sbjct: 121 SLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVS---DGKVTVYS 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
PEE+ P+PL + +P+++TF + + ++D T EEAV G + L+ G++ K
Sbjct: 178 PEEKVPVPLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTK 237
Query: 245 PGG 247
G
Sbjct: 238 AEG 240
>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
OT3]
gi|29336585|sp|O59224.1|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
horikoshii OT3]
Length = 274
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 156/259 (60%), Gaps = 12/259 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR + I+ G + +GS+ V+LG T ++ + L +P+ D PN G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R+ DRG+RESRA++ E + ++ GK+V + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+ GNL+DA IA++A+LL + P+ E ++E++ EE+EPLP + +
Sbjct: 139 DVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEETGEVEIL----EEKEPLP--VERI 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI VTF ++LV+DP+ EE VM G++T T + G + A+QK G +M
Sbjct: 193 PIPVTFAKIG--NILVVDPSLEEELVMDGRLTVTTDETGHISAVQKGEGGAFKLEEVMYA 250
Query: 259 LRLASRMASDITKKIKDAV 277
+ A + A +I K + +A+
Sbjct: 251 VETAFKKAEEIRKIVLEAI 269
>gi|119192860|ref|XP_001247036.1| hypothetical protein CIMG_00807 [Coccidioides immitis RS]
gi|392863730|gb|EAS35502.2| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 292
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A L+ NE+ FI AL + +R+DGR ++R L++ FG E G +VQLG+T ++ +
Sbjct: 1 MARDTELSANERSFILEALHNNVRLDGRALDQFRPLNLTFGDEYGHVKVQLGRTTVIVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ ++ P +R ++G ++ E + MA P FETGR S+ +L R +D+ +R S A+DTE
Sbjct: 61 SAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKIVRRSNALDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G W +R D+HI+D G LVD +A +A LL FR PE ++ D +V V+
Sbjct: 121 SLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVS---DGKVTVYS 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
PEE+ P+PL + +P+++TF + + ++D T EEAV G + L+ G++ K
Sbjct: 178 PEEKVPVPLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTK 237
Query: 245 PGG 247
G
Sbjct: 238 AEG 240
>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
Length = 270
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 155/253 (61%), Gaps = 10/253 (3%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
RIDGR+ + R L +K + +GS+ V+LG T ++ + L +P+ D P++G ++
Sbjct: 21 RIDGRSLEDLRPLEVKVNVIEKAEGSAWVKLGNTQVLVGIKLDLGEPFPDLPDKGVMTTN 80
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E P+A P+FE G P E A+EL R+VDRG+RES+A+D E L ++ GKLV + ID+H+L
Sbjct: 81 VELVPLASPTFEPGPPDERAIELARVVDRGIRESQAIDLEKLVIIPGKLVRVVFIDVHVL 140
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D+ GNLVDA I A+A+LL+ + P+ E+ EV++ +E EPLP + +PI V+F
Sbjct: 141 DHDGNLVDATGIGAIAALLSTKMPKIEY-NEETGEVMML--DEYEPLP--VTKIPIPVSF 195
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
+V+DP EE VM GK+T T + NG + A+QK G +M + +A +
Sbjct: 196 AKIGGT--IVVDPNLEEEHVMDGKLTITTDENGYISAVQKSEGGSFKLEEVMYAVDVAFK 253
Query: 265 MASDITKKIKDAV 277
A +I +KI +AV
Sbjct: 254 KAQEIREKILEAV 266
>gi|384499441|gb|EIE89932.1| hypothetical protein RO3G_14643 [Rhizopus delemar RA 99-880]
Length = 204
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 114/165 (69%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+VNE F+ AL G R+DGR ++ R I G + G +EV+LG+T + VT ++V+P
Sbjct: 8 SVNESTFLLEALKQGKRVDGREVYDMRSTEIVLGSDYGYAEVRLGKTKVAANVTAEVVRP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP EG L TE SPMA P+FE+G SE V + R+V++ LR SRA+DTE LC+++G
Sbjct: 68 YADRPTEGILIFNTEISPMAAPTFESGSRSEEEVLISRVVEKALRRSRAIDTEGLCIVSG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176
+ VW IR+DL LD+ GNLVD A IAA+ +LL FRRP+ ++ GED
Sbjct: 128 EKVWQIRVDLMFLDHDGNLVDCACIAAITALLHFRRPDVTVSGED 172
>gi|385301287|gb|EIF45489.1| rrp45p [Dekkera bruxellensis AWRI1499]
Length = 261
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 24/242 (9%)
Query: 44 FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE------- 96
F E G +V+LG+T + ++ + QPY+DRP EG I TE SPM P FE
Sbjct: 7 FPDEYGHVDVKLGKTEVACKISASIEQPYKDRPFEGLFQINTEISPMCSPFFEVSQGAAG 66
Query: 97 --TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAA 154
+ R + + + R++++ +R S A+D E+LC++AG W++R DLH L+ GN +DA+
Sbjct: 67 GTSSRQTSEEILISRMIEKSVRRSNALDLENLCLVAGSKCWSVRADLHFLNYDGNFIDAS 126
Query: 155 NIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF------- 207
IA + +LL F++P+ + G+D ++V ++R+P+PL I H+P+ VTF F+
Sbjct: 127 CIAVMTALLHFKKPDVEVSGDD---IVVFDTKQRDPVPLSILHIPLCVTFNFYNPNGDEE 183
Query: 208 -----SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLA 262
S+ L+V+D EE + +G MT TLN N +VC + K GG + S+IM C +
Sbjct: 184 NIKGESNGELIVVDTNLIEERLSLGSMTITLNKNQEVCQLLKSGGLNIDASLIMNCWYIC 243
Query: 263 SR 264
+
Sbjct: 244 CQ 245
>gi|240849627|ref|NP_001155833.1| 3 exoribonuclease-like [Acyrthosiphon pisum]
gi|239791374|dbj|BAH72161.1| ACYPI010191 [Acyrthosiphon pisum]
Length = 400
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 157/290 (54%), Gaps = 11/290 (3%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
EK FI A S IR+DGR EYR L I +G + G+ V LG T + V+ ++ QP
Sbjct: 10 EKTFILEAASQKIRLDGRKKDEYRPLKIAYGLDWGNCLVTLGCTRVFAQVSCEIYQPNNS 69
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L I E + ++ ++++R ++S+ +D E+LC++A + V
Sbjct: 70 RPNEGVLQISAELA--------GDNKINDLTKINQVLERFYKDSKCIDLEALCIIAEEKV 121
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W I++DL +L+ GN + +IA LA+L+ FR P+ GE +V+V+ ER+P+PL
Sbjct: 122 WKIKVDLSVLNMDGNTLGCCSIATLAALMHFRYPDVVSTGE---KVVVYSSSERDPIPLS 178
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+HH P+ +F F +++DP+ E+ V K++ N + ++C + G + Q++
Sbjct: 179 LHHHPVIASFAIFEKYDFIILDPSLLEDKVCDNKLSICFNNHSEMCGVDIEGCASLSQNL 238
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNL 304
+M C A+ +A + KIK A++ R+ + K +++ D + L
Sbjct: 239 LMNCSNQAASVAIKLVDKIKSAIQIDIKNRSSKSFKGLEPAVSEDNGLKL 288
>gi|50546251|ref|XP_500645.1| YALI0B08514p [Yarrowia lipolytica]
gi|49646511|emb|CAG82887.1| YALI0B08514p [Yarrowia lipolytica CLIB122]
Length = 299
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 152/276 (55%), Gaps = 12/276 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++N+++F+ AL R+DGR+ E R + + FG + G E+ +G+T ++ ++ ++ +
Sbjct: 2 ISINDRKFLTEALKVSKRLDGRSMEEQRPMEVTFGSQFGHVELTMGKTKVVVRISAEITK 61
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P RP EG + T+ MA P FE SE + + ++V++ +R S A+D ESLC++A
Sbjct: 62 PNERRPFEGIFVVHTDIGSMASPIFENNHQSEQEIMISQVVEKAVRRSGALDLESLCIVA 121
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
GK W IR D+H LD G LVDA A +A L F++P+ + G V V EER P
Sbjct: 122 GKKCWEIRADVHYLDFDGGLVDATCAAVMAGLYHFKKPDVDVDGG---AVTVCDMEERHP 178
Query: 191 LPLIIHHLPIAVTFGFFS---------SESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
+ L + HLP++VT+G F + V+D T E V ++T T+N N D+C
Sbjct: 179 VALSVLHLPVSVTYGLFELKNDETNEVEKVECVLDCTAIERQVQNAEITITINKNRDICQ 238
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
I KP G + I++ A + A +T+ I A+
Sbjct: 239 ISKPSGVSIEGYRIVELCEKAFQEALKVTEMIDKAL 274
>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
Length = 258
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 155/266 (58%), Gaps = 20/266 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K FI L G RIDGR +YR++SI+ + +GS+ V+LG + ++ V Q +P
Sbjct: 9 KKDFIYNLLIKGERIDGRKFDQYREISIERDVIRKAEGSALVKLGSSQVLVGVKMQPGEP 68
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
++D PN G + E P+A PSFE G P+E +EL R+VDRG+RES+AVD E+LC+ G
Sbjct: 69 FQDSPNRGVIITNAELVPLASPSFEPGPPNEVGIELARLVDRGVRESKAVDLEALCIEPG 128
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
K VW + ID+HILD+ GN++DAA++ A+++LL + P G GED +
Sbjct: 129 KKVWIVFIDVHILDDCGNILDAASLGAISALLCTKVPASRFGLGEDYI------------ 176
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
LP I +PIA T FS +L+ DP EEA+ K+T NGD+C +QK G +
Sbjct: 177 LP--IRDIPIATTAIEFS--DVLMFDPGVEEEAIANTKLTVITTTNGDICGMQKSGTGML 232
Query: 251 LQSVIMQCLRLASRMASDITKKIKDA 276
+ + + +A A +I +K +A
Sbjct: 233 NPEQVYRIIDIACEKAKEIREKFLEA 258
>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
Length = 269
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 157/254 (61%), Gaps = 12/254 (4%)
Query: 28 RIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
RIDGR ++R L+++ + +GS+ V+LG T ++ + +L +P+ D P+ G ++
Sbjct: 21 RIDGRGLEDFRPLTVETNVIEKAEGSALVKLGNTQVLVGIKVELGEPFPDLPDMGVITTN 80
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
EF P+A P+FE G P ESA+EL RI+DRG+RES+A+D E L ++ GKLV I ID+H+L
Sbjct: 81 VEFVPLASPTFEPGPPDESAIELARIIDRGIRESQAIDLEKLVIVPGKLVRVIFIDVHVL 140
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D+ GNL+DA+ I A+A+LL+ + P+ E + V++ EE E LP + +PI VT
Sbjct: 141 DHDGNLLDASGIGAIAALLSTKIPKVDYNEEIEEVVML---EEYEKLP--VKRIPIPVTL 195
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP-GGEGVLQSVIMQCLRLAS 263
LV+DP EE VM GK+T T + NG + A+QK GG L+ V+ + LA
Sbjct: 196 AKIGGN--LVVDPNFEEEQVMDGKITITTDENGYISAVQKSEGGSFKLEEVV-YAVDLAY 252
Query: 264 RMASDITKKIKDAV 277
+ A ++ K + A+
Sbjct: 253 KKAEEVRKVVFGAI 266
>gi|375082087|ref|ZP_09729157.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
gi|374743300|gb|EHR79668.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
Length = 269
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 160/264 (60%), Gaps = 14/264 (5%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L G RIDGR P + R L+I+ + +GS+ V+LG T ++ + +P+ D
Sbjct: 12 ILNLLKEGKRIDGRGPEDLRPLTIETNVIEKAEGSALVKLGNTQVLVGIKVDFGEPFPDL 71
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P G ++ EF P+A P+FE G P E A+EL R+VDRG+RES+AVD L ++ GKLV
Sbjct: 72 PEMGVMTTNVEFVPLASPTFEPGPPDERAIELARVVDRGIRESQAVDLSKLVIVPGKLVR 131
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLI 194
I ID+HILD+ GNL+DA+ I A+A+LL+ + P+ E +++++ +E EPLP
Sbjct: 132 VIFIDVHILDHDGNLLDASGIGAIAALLSTKIPKVEYDEESGEVKLL----DEYEPLP-- 185
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP-GGEGVLQS 253
+ +PI V+F + L++DP EE VM GK+T T + NG + A+QK GG L+
Sbjct: 186 VTKVPIPVSFAKIGNA--LIVDPNFEEEQVMDGKLTITTDENGYISAVQKSEGGSFKLEE 243
Query: 254 VIMQCLRLASRMASDITKKIKDAV 277
V+ + LA + A +I K + +++
Sbjct: 244 VV-YAVDLAYKKAEEIRKVVLESI 266
>gi|320033639|gb|EFW15586.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 265
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A L+ NE+ FI AL + +R+DGR ++R L++ FG E G +VQLG+T ++ +
Sbjct: 1 MARDTELSANERSFILEALHNNVRLDGRALDQFRPLNLTFGDEYGHVKVQLGRTSVIVRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ ++ P +R ++G ++ E + MA P FETGR S+ +L R +D+ +R S A+DTE
Sbjct: 61 SAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKIVRRSNALDTE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G W +R D+HI+D G LVD +A +A LL FR PE ++ D +V V+
Sbjct: 121 SLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPESTVS---DGKVTVYS 177
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
PEE+ P+PL + +P+++TF + + ++D T EEAV G + L+ G++ K
Sbjct: 178 PEEKVPVPLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGAVIIALDKTGEIALYTK 237
Query: 245 PGG 247
G
Sbjct: 238 AEG 240
>gi|149048738|gb|EDM01279.1| exosome component 9, isoform CRA_a [Rattus norvegicus]
Length = 353
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 134/189 (70%), Gaps = 3/189 (1%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P+PL IHH+PI V+F FF
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDPVPLSIHHMPICVSFAFFQQ 117
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+ L++DP EE VM G + +N + ++C IQ GG +L+ + +C ++A ++I
Sbjct: 118 GTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVFRCSKIAGVKVAEI 177
Query: 270 TKKIKDAVE 278
T+ I+ A+E
Sbjct: 178 TELIQKALE 186
>gi|341582107|ref|YP_004762599.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
gi|340809765|gb|AEK72922.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
Length = 269
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 156/263 (59%), Gaps = 12/263 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L G R+DGR +YR L IK + +GS+ V+LG T ++ V + +P+ D
Sbjct: 12 ILALLKEGKRVDGRGLEDYRDLEIKVNVIEKAEGSAWVRLGNTQVLVGVKVDMGEPFPDL 71
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+ G ++ E P+A PSFE G P E+A+EL R+VDRG+RES+AV+ E L ++ GKLV
Sbjct: 72 PDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESQAVELEKLVIVPGKLVR 131
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-DDLEVIVHPPEEREPLPLI 194
+ ID+H+LD+ GNL+DA+ I A+A+LL+ R P+ E D++EV+ +E EPLP
Sbjct: 132 VVFIDVHVLDHDGNLLDASGIGAIAALLSTRMPKVVYNEETDEVEVL----DEYEPLP-- 185
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ +PI VT L +DP EE VM G++ T + N + ++QK G
Sbjct: 186 VRRIPIPVTMAKIGPNIL--VDPNLDEERVMDGRIIITTDENAMISSVQKSEGGSFKLEE 243
Query: 255 IMQCLRLASRMASDITKKIKDAV 277
+M + A + A++I +K+ +AV
Sbjct: 244 VMYAVDTAIKKAAEIREKVLEAV 266
>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
AV19]
gi|29336820|sp|Q8TYC2.1|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
RNase PH [Methanopyrus kandleri AV19]
Length = 267
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 157/256 (61%), Gaps = 11/256 (4%)
Query: 22 ALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNE 78
A+ +G RIDGR+ E+R + ++ G + +GS+ V+LG T ++ V ++ +PY D PNE
Sbjct: 17 AIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNE 76
Query: 79 GTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIR 138
G L++ E P+ADPSFE G P E+A+EL R+VDRG+RES +D E LC+ G+ W
Sbjct: 77 GALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTF 136
Query: 139 IDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHL 198
+D+H+LD+ GNL DA+ I ++++L P+ + +D++EV+ E + PL I+
Sbjct: 137 VDIHVLDHDGNLFDASMIGSVSALSITEVPKAEV-VDDEVEVM-----EEDTEPLAINDF 190
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI+VT L++DP EE +M ++T T+ +G+VCA+QK + ++
Sbjct: 191 PISVTIAKVG--EYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQKGELGDFPEHLLEDA 248
Query: 259 LRLASRMASDITKKIK 274
+ LA++ A ++ + +K
Sbjct: 249 IDLATKKAEEVRRTVK 264
>gi|388579995|gb|EIM20313.1| exosome complex exonuclease rrp45 [Wallemia sebi CBS 633.66]
Length = 286
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 153/270 (56%), Gaps = 6/270 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+ +N K FI AL R+DGR+ E R + I+FG+ GS ++LG+ +M V+ + Q
Sbjct: 7 VNLNNKEFIVNALKENKRLDGRSLLEGRPIEIQFGKPLGSVTIKLGECSVMSSVSCTVTQ 66
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVE---LGRIVDRGLRESRAVDTESLC 127
P +RP EG L+I +E S M P +E G +A E L R +D+ +R S VD E+LC
Sbjct: 67 PTPERPYEGQLNISSELSAMTTPFYEPGMRGNTAEEEATLNRQLDKAIRRSGMVDREALC 126
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
++ G+ VW++ + LH + + GNL+DA IAA A+LL FRRP+ ++ G EV H +E
Sbjct: 127 IIGGEKVWSLNLTLHYISDDGNLIDAGVIAAAAALLHFRRPDATVIGN---EVTYHSEDE 183
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
R P+PL I+H PI+ ++ FF V+DPT E + T T +V I K GG
Sbjct: 184 RVPVPLAINHTPISFSYVFFDDFDNAVLDPTALESQLSSATFTITTTPQKEVLTITKNGG 243
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAV 277
++ CL A+ A+ I+K++ A+
Sbjct: 244 TTFAPQTVLDCLGHATERAAVISKQLHTAI 273
>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
gammatolerans EJ3]
gi|259645408|sp|C5A2B8.1|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
protein (Rrp42p) [Thermococcus gammatolerans EJ3]
Length = 273
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 155/258 (60%), Gaps = 10/258 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RIDGR+ EYR + IK G + +GS+ V+LG T ++ + + +P+ D P+ G
Sbjct: 19 LKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RES+AV+ E L ++ GKLV + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+H+LD+ GNL DA +AA+A+L+T + P+ E+ E+I +E EPLP + H+P
Sbjct: 139 DVHVLDHDGNLFDATGLAAMAALMTTKIPKVEY-NEETGEII--KLDEYEPLP--VKHVP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
I VTF S +++DP EE VM ++T T + G + A+QK G +M +
Sbjct: 194 IPVTFAKIGSS--IIVDPNLDEETVMDSRLTITTDETGHISAVQKGEGGSFKLEEVMYAI 251
Query: 260 RLASRMASDITKKIKDAV 277
A + A ++ K + +AV
Sbjct: 252 DTALKKADELRKILLEAV 269
>gi|148703132|gb|EDL35079.1| exosome component 9, isoform CRA_b [Mus musculus]
Length = 353
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 134/189 (70%), Gaps = 3/189 (1%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P+PL IHH+PI V+F FF
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDPVPLSIHHMPICVSFAFFQQ 117
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+ L++DP EE VM G + +N + ++C IQ GG +L+ + +C ++A ++I
Sbjct: 118 GTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVFRCSKIAGVKVAEI 177
Query: 270 TKKIKDAVE 278
T+ I+ A+E
Sbjct: 178 TELIQKALE 186
>gi|323334135|gb|EGA75519.1| Rrp45p [Saccharomyces cerevisiae AWRI796]
Length = 255
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 16/232 (6%)
Query: 55 LGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDR 113
+G T + ++ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++
Sbjct: 1 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 60
Query: 114 GLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG 173
+R S A+D E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++
Sbjct: 61 SVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVH 120
Query: 174 GEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHE 221
GE ++IVHP EREP+PL I H+PI VTF FF ++ + +ID T E
Sbjct: 121 GE---QIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKE 177
Query: 222 EAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
E + G +T TLN N +V + K GG + +M+C A + IT +I
Sbjct: 178 ELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 229
>gi|119625655|gb|EAX05250.1| exosome component 9, isoform CRA_d [Homo sapiens]
Length = 393
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 142/268 (52%), Gaps = 49/268 (18%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ + PEER+P
Sbjct: 126 GE-------------------------------------------------KYTPEERDP 136
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 137 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 196
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 197 LKDQVLRCSKIAGVKVAEITELILKALE 224
>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
NA1]
gi|226740342|sp|B6YSE7.1|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 272
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 157/263 (59%), Gaps = 12/263 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L G R+DGR+ +YR L IK + +GS+ V+LG T ++ + + +P+ D
Sbjct: 15 ILALLKEGKRVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDL 74
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P +G ++ E P+A PSFE G P E A+EL R+VDRG+RES AV+ E L ++ GKLV
Sbjct: 75 PEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVR 134
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLI 194
+ ID+H+LD+ GNL+DA+ I A+A+L++ + P+ E +++++ +E EPLP
Sbjct: 135 VVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQIL----DEYEPLP-- 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ +PI VT L++DP EE VM G++T T + NG + ++QK G
Sbjct: 189 VSKMPIPVTIAKVGGN--LLVDPNLDEELVMDGRITITTDENGMISSVQKSEGGSFKLEE 246
Query: 255 IMQCLRLASRMASDITKKIKDAV 277
+M + LA A++I +K+ +AV
Sbjct: 247 VMYAIDLALTKAAEIREKVLEAV 269
>gi|390960832|ref|YP_006424666.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
gi|390519140|gb|AFL94872.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
Length = 269
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 160/265 (60%), Gaps = 14/265 (5%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L G R+DGR +YR L I+ + +GS+ V+LG T ++ + + +P+ D
Sbjct: 12 ILALLKEGKRVDGRGLEDYRDLEIRVNVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDL 71
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+ G ++ E P+A PSFE G P E+A+EL R+VDRG+RES AV+ E L ++ GKLV
Sbjct: 72 PDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESGAVELEKLVIVPGKLVR 131
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-DDLEVIVHPPEEREPLPLI 194
+ ID+H+LD+ GNL+DA I A+A+LL+ + P+ E D++EV+ +E EPLP
Sbjct: 132 VVFIDVHVLDHDGNLLDATGIGAIAALLSTKIPKVVYNEETDEVEVL----DEYEPLP-- 185
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP-GGEGVLQS 253
+ +PI VTF L+IDP EE VM G++ T + NG + ++QK GG L+
Sbjct: 186 VRRVPIPVTFAKIGPS--LLIDPNLDEERVMDGRIIITTDENGMISSVQKSEGGSFKLEE 243
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
VI + A + ++I +K+ +AV+
Sbjct: 244 VI-YAVDTAIKKGAEIREKVLEAVK 267
>gi|179287|gb|AAA58384.1| autoantigen [Homo sapiens]
gi|63992811|gb|AAY40968.1| unknown [Homo sapiens]
Length = 355
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 134/189 (70%), Gaps = 3/189 (1%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P+PL IHH+PI V+F FF
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDPVPLSIHHMPICVSFAFFQQ 117
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+ L++DP EE VM G + +N + ++C IQ GG +L+ +++C ++A ++I
Sbjct: 118 GTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEI 177
Query: 270 TKKIKDAVE 278
T+ I A+E
Sbjct: 178 TELILKALE 186
>gi|497643|gb|AAA18832.1| PM-Scl-75 autoantigen [Homo sapiens]
Length = 372
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 134/189 (70%), Gaps = 3/189 (1%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+ VW IR+DLH+L++ GN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P+PL IHH+PI V+F FF
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDPVPLSIHHMPICVSFAFFQQ 117
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+ L++DP EE VM G + +N + ++C IQ GG +L+ +++C ++A ++I
Sbjct: 118 GTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEI 177
Query: 270 TKKIKDAVE 278
T+ I A+E
Sbjct: 178 TELILKALE 186
>gi|223477853|ref|YP_002582207.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
Length = 273
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 154/258 (59%), Gaps = 10/258 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RIDGR+ EYR + IK G + +GS+ V+LG T ++ + + +P+ D P+ G
Sbjct: 19 LKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RES+AV+ E L ++ GKLV + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+H+LD+ GNL DA +AA+A+LLT R P+ E+ E++ +E EPLP + +P
Sbjct: 139 DVHVLDHDGNLFDATGLAAMAALLTTRVPKVEY-NEETGEIV--KLDEYEPLP--VRRIP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ VTF S +++DP EE VM ++T T + G + A+QK G +M +
Sbjct: 194 LPVTFAKIGSS--IIVDPNLDEETVMDSRITITTDETGHISAVQKGEGGSFKLEEVMYAI 251
Query: 260 RLASRMASDITKKIKDAV 277
A + A ++ K + +AV
Sbjct: 252 DTALKKADELRKILLEAV 269
>gi|403346784|gb|EJY72799.1| Polymyositis/scleroderma autoantigen 1 [Oxytricha trifallax]
Length = 463
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 160/279 (57%), Gaps = 9/279 (3%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L++NEK F+E A+ S R+D R ++YR + ++FG E+G +++G+THI+ + +LV
Sbjct: 5 LSINEKEFLEQAIKSKFRVDARGLYDYRHVDVRFGNENGQVLLKIGKTHILTQASLKLVS 64
Query: 71 PYRDRPNEGTLSIFTEFSPM---ADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
P +PNEG TEFS + A+ + SE V++ R +D+ L+ SRA D ESLC
Sbjct: 65 PQPGKPNEGFFRFNTEFSSLLHSAEYTSSINTLSEMRVDITRFIDKVLKSSRATDRESLC 124
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
++ G+LVW++ +DL +L+ GN++DA IA++ L+ R PE ++ + +V ++ +
Sbjct: 125 IVQGRLVWSLSVDLFLLNEDGNVMDACFIASVLCLMNTRLPEVTISKD---QVKINYEKV 181
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ L +HH+PI TF F ++ EE + +++ +N D+C + G
Sbjct: 182 K---YLNVHHIPICTTFYFIEGIDQPILYANGKEEKLAKSRLSMCMNIFEDLCGMSTLGC 238
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
+ I+QC ++A + ++T+ I++A ++++ L
Sbjct: 239 LEIDPITIIQCSKIALQKTKELTRIIREAFANRHSQQLL 277
>gi|410932317|ref|XP_003979540.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 312
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 121/175 (69%), Gaps = 6/175 (3%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N+ E+ F+ A++ R+DGR ++YR++ + FG + G V+LG+T +M
Sbjct: 3 DTPLSNS------ERDFLLKAIAEKKRLDGRQTYDYRRIKVSFGADYGCCFVELGETRVM 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V+ +LV P RPNEG L E SPMA P+FE GR SE +V+L R ++R LR S+ +
Sbjct: 57 AQVSCELVAPKESRPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERCLRNSKCI 116
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176
DTESLCV++G+ VW IR+D+H+L++ GNL+DAA+IAA+ +L FRRP+ S GE+
Sbjct: 117 DTESLCVVSGEKVWQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPDVSSVGEE 171
>gi|308807186|ref|XP_003080904.1| putative polymyositis/scleroderma autoantigen (ISS) [Ostreococcus
tauri]
gi|116059365|emb|CAL55072.1| putative polymyositis/scleroderma autoantigen (ISS) [Ostreococcus
tauri]
Length = 869
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 160/302 (52%), Gaps = 22/302 (7%)
Query: 11 LTVNEKRFIETAL-----SSGIRIDGRNPFEYR--------KLSIKFGREDGSSEVQLGQ 57
+++N + FI AL S RIDGR P E R ++ I FG DG V+LG
Sbjct: 422 VSMNNREFIVAALQGDEDSGPFRIDGRAPGEVRGGGDTFENQIEISFGPLDGVCVVRLGH 481
Query: 58 THIMGFVTGQLVQPYRDRPN-EGTLSIFTEFSPMADPSF-ETGRPS----ESAVELGRIV 111
T TGQL +P + EG+L + EFS A F GR S + + +LG ++
Sbjct: 482 TLACATTTGQLERPASAGASAEGSLRVDVEFSSGACTGFARDGRASRETRQRSRDLGMLL 541
Query: 112 DRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171
+RGL++ RAVD ESLCVLAGK WAI + IL + GNL A++AA SL+T+RRPECS
Sbjct: 542 ERGLKDGRAVDVESLCVLAGKRTWAITCSVTILAHDGNLAGVASLAACGSLMTYRRPECS 601
Query: 172 LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFS-SESLLVIDPTHHEEAVMVGKMT 230
+ + V VH + RE + L +HH PIA T+ FF + L V DPT EE G +
Sbjct: 602 VDPNSGI-VTVHSVDAREAIALNMHHFPIASTYCFFDEAPGLAVADPTLEEEITADGSVV 660
Query: 231 ATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
+N+ +VCA+ G GV + QC+ + A T+ +K A + R K++
Sbjct: 661 CVVNSLEEVCAVSTSGN-GVSGEDVKQCVSASVNTAMKWTEVLKAAAADFEAARLANKVR 719
Query: 291 RH 292
H
Sbjct: 720 TH 721
>gi|68074995|ref|XP_679414.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56500153|emb|CAI00593.1| exosome complex exonuclease, putative [Plasmodium berghei]
Length = 511
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 22/353 (6%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
N F L + +R+DGRN + R +SI F + G+ EV +G T ++ +T ++V+PY
Sbjct: 6 NNTNFFWCNLKNKLRLDGRNFEDSRNVSIYFLGDYGNVEVSIGNTKVVCKITSEIVKPYD 65
Query: 74 DRPNEGTLSIFTE---FSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
+PNEG + I + F+ D S + S+ +E+ +++R + S ++ ESLC++
Sbjct: 66 KKPNEGIIKINLDVESFNTYNDIS----KISDECLEIKNLIERIFKASNILNFESLCIIP 121
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
K VW + I++ +++N GNL D+ ++A ++LL FR + D+ ++ EE
Sbjct: 122 YKKVWCLLINITVIENDGNLYDSCYLSAYSALLHFRNSSVDI---DNTGNVIIDEEEVNY 178
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L +H+ PI TF +F+ E + +IDP+ +EE M K++ +N N ++ +I KPGG +
Sbjct: 179 TSLSVHNSPILTTFAYFNFEEICLIDPSLYEEEFMSSKLSIAINKNENLISILKPGGLPI 238
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTER-ALRKIKRH------PTSITLDGSVN 303
I+Q + LA + I K +KDA++ N R L+K H P I DG
Sbjct: 239 SYDKILQGIELAKKRVKSILKILKDALKEDNDLRNNLKKKNLHIKYSSNPVHIKYDGDDI 298
Query: 304 LKEKLNEPSGHNVVNELS----RKHLEKPRLASAENASS-PGNNGEGESKSSN 351
+++ L+ V+N L+ K E+ L++ EN +S G N E+K N
Sbjct: 299 VEKSLDVTINQMVINNLNIEKIVKKYEQYILSNGENINSIIGKNNIEENKILN 351
>gi|326428882|gb|EGD74452.1| hypothetical protein PTSG_05816 [Salpingoeca sp. ATCC 50818]
Length = 280
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 148/248 (59%), Gaps = 11/248 (4%)
Query: 11 LTVNEKRFIETALSSG------IRIDGRNPFEYRKLSIKFGRED-GSSEVQLGQTHIMGF 63
LT E+ FI + G +R+DGR E R++ + GR+ G + +G T +
Sbjct: 6 LTTCEREFIHNVMKEGGEDGELVRLDGRGKSEMRRVLVTLGRQQYGQATASIGNTQAICR 65
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETG-RPSESAVELGRIVDRGLRESRAVD 122
V+ +V+P+ DRP +G + SPMA P ++ G RPS +++ L R+++ RE+RA+D
Sbjct: 66 VSCSIVRPHEDRPTKGFVRYGVTLSPMASPDYDAGGRPSAASIYLTRLLEHIFREARALD 125
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV 182
ESLC++AG+ VWA+ +++ + ++ GN+ DA +AALA L+ FRRP S+ G+D V+V
Sbjct: 126 DESLCIVAGEKVWAVSVNVTVTNDDGNMEDACALAALAGLMHFRRPYVSIAGQD---VVV 182
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
HP +E EP+ L I+H P+ VT F + L ++DPT E V G ++ +N +G++C I
Sbjct: 183 HPFDEHEPVSLAINHRPLNVTTALFDNGDLALVDPTKIELKVADGSISVAMNTHGEICGI 242
Query: 243 QKPGGEGV 250
G V
Sbjct: 243 NSSEGLAV 250
>gi|414872542|tpg|DAA51099.1| TPA: hypothetical protein ZEAMMB73_538051 [Zea mays]
Length = 444
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/135 (64%), Positives = 109/135 (80%)
Query: 149 NLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFS 208
NL DAANIAALA+L TF RPEC++GG+D +V VH PE R+PLPL IHH+PIAVTF +F
Sbjct: 111 NLHDAANIAALAALSTFWRPECTVGGDDGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFG 170
Query: 209 SESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASD 268
+++V+DPT+ EEAVM G+MTA +N+NGDVCAIQK GGEG++ SV MQCLR+AS A+D
Sbjct: 171 EGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGEGLMSSVTMQCLRIASVKATD 230
Query: 269 ITKKIKDAVETYNTE 283
IT KIK AV ++ E
Sbjct: 231 ITSKIKKAVLIWDVE 245
>gi|82752803|ref|XP_727434.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483275|gb|EAA18999.1| similar to S. cerevisiae RRP45, putative [Plasmodium yoelii yoelii]
Length = 391
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 180/336 (53%), Gaps = 14/336 (4%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
N F L + +R+DGRN + R +SI F + G+ EV +G T ++ +T ++V+PY
Sbjct: 6 NNTNFFWCNLKNKLRLDGRNFEDSRNVSIYFLGDYGNVEVSIGNTKVVCKITSEIVKPYD 65
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+PNEG + I + + + + ++ +E+ +++R + S ++ ESLC++ K
Sbjct: 66 KKPNEGIIKINLDVESFNTYNNDISKITDECLEIKNLIERIFKASNILNFESLCIIPYKK 125
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW + I++ +++N GNL D+ ++A ++LL FR ++ D+ ++ EE L
Sbjct: 126 VWCLLINITVIENDGNLYDSCYLSAYSALLHFRNNNVNI---DNTGNVIIDEEEVNYTSL 182
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+H+ PI TF +F+ E + +IDP+ +EE M K++ +N N ++ +I KPGG +
Sbjct: 183 SVHNSPILTTFAYFNFEEICLIDPSLYEEEFMSSKLSIAINKNENLISILKPGGLPISYD 242
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTER-ALRKIKRH------PTSITLDGSVNLKE 306
I+Q + LA + I K ++DA++ N R L+K H P I DG +++
Sbjct: 243 TILQGIELAKKRVKSILKILEDALKEDNDLRNNLKKKNLHIKYSSNPVHIKYDGEDIVEK 302
Query: 307 KLNEPSGHNVVNELS----RKHLEKPRLASAENASS 338
L+ V+N L+ K E+ L++ EN +S
Sbjct: 303 SLDVTINQMVINNLNIEKIVKKYEQYILSNGENINS 338
>gi|156101467|ref|XP_001616427.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148805301|gb|EDL46700.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 518
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 149/265 (56%), Gaps = 4/265 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
N F L +R+DGR + R +SI F E G+ EV +G T ++ +T ++V+P+
Sbjct: 6 NNANFFWCNLKKKLRLDGRKFEDSRNISIYFLGEHGNVEVSIGHTKVICKITSEIVKPFD 65
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
RPNEG + + + + + + + S+ +E+ +++R L+ S ++ ESLC++ K
Sbjct: 66 KRPNEGIIKVNLDIDSFTNVN-DNSQISDECLEIKNLIERILKSSNLLNLESLCIIPHKK 124
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW + +++ +++N GNL D+ ++A + L+ +R E ++ + I+ E PL
Sbjct: 125 VWCLLVNIIVIENDGNLYDSCYLSAYSGLVHYRNNEVTVDSSGN---IIIEEGETNYTPL 181
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
IH+ PI TF +F+ E + +IDP+ HEE M K++ LN NG + +I KPGG +
Sbjct: 182 SIHNTPILTTFAYFNCEDICLIDPSIHEEEFMSSKLSVALNKNGKLVSILKPGGSPISYE 241
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
I++ + LA + I K ++DA+E
Sbjct: 242 KILEAIELAKKRVKSILKILEDALE 266
>gi|163311555|gb|ABY26732.1| Rrp45p [Pichia kudriavzevii]
gi|163311560|gb|ABY26736.1| Rrp45p [Pichia kudriavzevii]
gi|163311565|gb|ABY26740.1| Rrp45p [Pichia kudriavzevii]
Length = 410
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 156/331 (47%), Gaps = 105/331 (31%)
Query: 52 EVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPS--------FETGRPS-- 101
EV+LG+T++ V+ Q+ QPY DRP EGT +I TE + M P+ F T P+
Sbjct: 56 EVKLGETYVSCKVSAQITQPYEDRPFEGTFAISTEITAMCSPAFSNSNNTDFSTAAPAIV 115
Query: 102 -----------------------------------------------ESAVELGRIVDRG 114
+ + LGR++++G
Sbjct: 116 PATSVNVPSNGESNNNNNSNNGSGSGNQENQLSMGGGAVMGLAADQGATEILLGRLIEKG 175
Query: 115 LRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL-G 173
+R S A+D ESLC++AG+ WA+R D+ L+ GNLVDAA+IA + +LL FR+P+ L G
Sbjct: 176 VRRSNALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVG 235
Query: 174 GEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES---------------------- 211
+ E+I++ ++RE +PL I H+PI VTF FFS+ES
Sbjct: 236 SGEGTELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSN 295
Query: 212 -------------------------LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
++++D T EE + G MT TLN+N ++C I K G
Sbjct: 296 NGDEGDDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSG 355
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
G V +++C ++AS++ TK+IK +
Sbjct: 356 GLNVDSKKVLECCQIASKIVDKWTKQIKQVL 386
>gi|150865099|ref|XP_001384176.2| hypothetical protein PICST_59559 [Scheffersomyces stipitis CBS
6054]
gi|149386355|gb|ABN66147.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 307
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 158/289 (54%), Gaps = 18/289 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
++ NE+ + AL G+R+D R E R+ I + E G E+ G T + V+ Q+
Sbjct: 7 ISTNERTYFIEALKCGLRLDSRRFDEIREPQISLSKTEFGYVELDWGLTKLAVRVSAQIG 66
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+PY DRP EG I E S MA F+ + S + + RI+++ +R S ++D E+LC++
Sbjct: 67 KPYEDRPFEGLFQINCEISSMAWAHFDNSKNSNEEILIARIIEKAIRRSNSLDLEALCII 126
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEVIVHPPEE 187
AG+ VW I +DL+ L+ GN VD A+ +L F++P+ S+ GGED +IVH +E
Sbjct: 127 AGEKVWNITVDLNFLNFDGNFVDVGCFGAMLALHHFKKPDISIVNGGED---IIVHDIDE 183
Query: 188 REPLPLIIHHLPIAVTFGFFS------------SESLLVIDPTHHEEAVMVGKMTATLNA 235
R+P+PL I H+PI +T+ F++ + + ++D EE V G + TLN
Sbjct: 184 RQPVPLSILHVPICLTYSFYNPGNKESNLKGEDDDEIYLLDANLIEEQVREGSIVVTLNK 243
Query: 236 NGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
N ++ + K GG + +V++ + ++ ++T+ IK + + ER
Sbjct: 244 NRELIQLSKNGGIPISANVLLDLSFKSMKIVDELTELIKKVISKHEKER 292
>gi|333986696|ref|YP_004519303.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
gi|333824840|gb|AEG17502.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
Length = 263
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 149/255 (58%), Gaps = 11/255 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+ G R DGR EYR++S++ G + +GS+ V++G T IM V Q+ P+ D P G
Sbjct: 17 IKEGKRTDGRAFDEYREISLETGVIDKAEGSARVKIGNTQIMVGVKTQIAAPFSDTPQMG 76
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L +E PMA P+FE G P E++VEL R+ DR +RE++ VD E LC++ GK VW I +
Sbjct: 77 VLMTNSELLPMAAPNFEPGPPDENSVELSRVTDRCVREAKVVDLEKLCIIEGKKVWMIFV 136
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
DLHILD GNL+D A + +A+L+ + P ++ EDD IV ++ PLP +
Sbjct: 137 DLHILDYEGNLMDTAVLGTVAALMNAKIPTATV--EDD--EIVLDYDKMIPLPF--NEKA 190
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ TF E LV+DP+ EE +M +++ + A+G +CA+QK G + + I++ +
Sbjct: 191 LMCTFAKIDDE--LVVDPSREEEEIMDARISIGMRADGTICAMQKGGAKPFKKDEILKAV 248
Query: 260 RLASRMASDITKKIK 274
+A ++ + +K
Sbjct: 249 TIAKEKTKELREYLK 263
>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
kamchatkensis 1221n]
gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
kamchatkensis 1221n]
Length = 286
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 155/261 (59%), Gaps = 13/261 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I ++ G RIDGR +YR + + + GSS V+LG T ++ V +L +P+ DR
Sbjct: 19 IVKSIKKGERIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEPFPDR 78
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P EG L + EF P+A PSFE G P E+A+E+ R++DR LRES+AV ++L + GK+VW
Sbjct: 79 PGEGVLQVHAEFVPLASPSFEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIVW 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
++ D++++D+ GN++D +A++ +L T R PE + GE+ +V + PL I
Sbjct: 139 SVYTDIYLVDHQGNIIDTGMLASMLALATSRIPEL-IKGENGYKV----DHTKYVGPLPI 193
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
+ L VT G ++ ++++DP EEAV+ +T ++ +G +C IQK G +G +SV+
Sbjct: 194 NTLVATVTMGIYN--DVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKGFSRSVL 251
Query: 256 MQCLRLA---SRMASDITKKI 273
+ +A R D+ KKI
Sbjct: 252 DNTIEIALSKGRELVDLMKKI 272
>gi|221057472|ref|XP_002261244.1| exosome complex exonuclease [Plasmodium knowlesi strain H]
gi|194247249|emb|CAQ40649.1| exosome complex exonuclease, putative [Plasmodium knowlesi strain
H]
Length = 514
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 149/265 (56%), Gaps = 4/265 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
N F L +R+DGRN + R +SI F E G+ EV +G T ++ +T ++V+P+
Sbjct: 6 NNANFFWCNLKKKLRLDGRNFEDSRNISIYFFGEYGNVEVSIGHTKVICKITSEIVKPFD 65
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
RPNEG + + + + + + + S+ +E+ +++R L+ S ++ ESLC++ K
Sbjct: 66 KRPNEGIIKVNLDIDSFTNVN-DNSQISDECLEIKNLIERILKSSNLLNFESLCIIPHKK 124
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW + +++ +++N GNL D+ ++A + L+ +R E ++ D + I E PL
Sbjct: 125 VWCLLVNIIVVENDGNLYDSCFLSAYSGLVHYRNNEVTV---DSIGNIFIEQGETNYTPL 181
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
IH+ PI TF +F+ E + +IDP+ EE M K++ LN NG + +I KPGG +
Sbjct: 182 SIHNTPILTTFAYFNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSILKPGGSPISYE 241
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
I++ + LA + I K ++DA+E
Sbjct: 242 KILEAIELAKKRVKSILKILEDALE 266
>gi|342877488|gb|EGU78940.1| hypothetical protein FOXB_10540 [Fusarium oxysporum Fo5176]
Length = 247
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 144/228 (63%), Gaps = 8/228 (3%)
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
V+ ++ PY DRP +G +I +E SPM PS+E RPS V L R++++ +R S A+DT
Sbjct: 14 VSAEVTVPYSDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTIRRSGALDT 73
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
ESLC++AG+ W+IR+DLH+L + GNL DAA +A +A+L FR+P+ S+ GE+ + ++
Sbjct: 74 ESLCLIAGQKCWSIRVDLHVLTHDGNLTDAACLAVVAALRHFRKPDSSIEGEN---ITIY 130
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSE-SLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P EREP+PL H P VTF FF + S +++D EE + + T +LN +G++C I
Sbjct: 131 TPAEREPVPLSWLHSPFCVTFSFFGEDGSQVLVDTNWLEEQLRISHCTYSLNKHGEICQI 190
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIK 290
K GG + + +QC ++ A + +K++ D V++ E A R+ K
Sbjct: 191 AKLGGTSLDAPLFIQC----AQGALNRSKELSDLVDSKLAEDAKRRDK 234
>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
Length = 274
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 159/259 (61%), Gaps = 12/259 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR +SI+ G + +GS+ V++G T ++ + L +P+ D PN G
Sbjct: 19 LKEGKRIDDRGFEDYRPISIEVGIIEKAEGSALVKIGNTQVLVGIKTTLGEPFPDTPNMG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RESRA++ E + ++ GK+V + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+ GNL+DA IAA+A+LL R P+ E ++EV+ EE+EPLP + +
Sbjct: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVEVL----EEKEPLP--VEKI 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
P+ VTF ++LV+DP+ EE VM G++T T + G + A+QK G +M
Sbjct: 193 PVPVTFAKIG--NILVVDPSLDEELVMEGRLTITTDETGHISAVQKSEGGAFKLEEVMYA 250
Query: 259 LRLASRMASDITKKIKDAV 277
+ +A + A +I K I +AV
Sbjct: 251 VDVAFKKAEEIRKMIIEAV 269
>gi|386002837|ref|YP_005921136.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
gi|357210893|gb|AET65513.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
Length = 259
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 150/262 (57%), Gaps = 20/262 (7%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
K ++ + G R DGR EYR+++++ G + DGS++V+LG+T ++ V Q +P+
Sbjct: 11 KDYLYHLVLKGERADGRAFDEYREITLQTGTIRKADGSADVRLGKTRVLVGVKIQPGEPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN+G + E P+A P+FE G P+E +EL R+VDRG+RES A+D SLC+ G+
Sbjct: 71 ADTPNKGVIITNAELVPLASPNFEPGPPNEVGIELARVVDRGVRESGAIDLPSLCIAPGE 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREPL 191
VW + ID+H+LD+ GNL+DA+++ A+A+L+T P G GED
Sbjct: 131 KVWIVFIDVHVLDDCGNLMDASSLGAIAALMTATVPAAQYGLGED--------------Y 176
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL + +P+A T F ++ DP EE+V K+T A+G VC +QK G +
Sbjct: 177 PLPVRDVPVATTAVEFGDA--IIFDPDTDEESVADTKLTVITTADGSVCGMQKSGPGFLS 234
Query: 252 QSVIMQCLRLASRMASDITKKI 273
Q I + + +A A +I +K
Sbjct: 235 QDKIYRIVDIACERAKEIREKF 256
>gi|218664806|gb|ACK99565.1| Rrp45p [Pichia kudriavzevii]
gi|218664811|gb|ACK99569.1| Rrp45p [Pichia kudriavzevii]
gi|218664815|gb|ACK99572.1| Rrp45p [Pichia kudriavzevii]
gi|218664819|gb|ACK99575.1| Rrp45p [Pichia kudriavzevii]
gi|218664823|gb|ACK99578.1| Rrp45p [Pichia kudriavzevii]
gi|218664827|gb|ACK99581.1| Rrp45p [Pichia kudriavzevii]
gi|218664831|gb|ACK99584.1| Rrp45p [Pichia kudriavzevii]
gi|218664835|gb|ACK99587.1| Rrp45p [Pichia kudriavzevii]
gi|218664839|gb|ACK99590.1| Rrp45p [Pichia kudriavzevii]
gi|218664843|gb|ACK99593.1| Rrp45p [Pichia kudriavzevii]
Length = 353
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 154/329 (46%), Gaps = 105/329 (31%)
Query: 54 QLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPS--------FETGRPS---- 101
+LG+T++ V+ Q+ QPY DRP EGT +I TE + M P+ F T P+
Sbjct: 1 KLGETYVSCKVSAQITQPYEDRPFEGTFAISTEITAMCSPAFSNSNNTDFSTAAPAIVPA 60
Query: 102 ---------------------------------------------ESAVELGRIVDRGLR 116
+ + LGR++++G+R
Sbjct: 61 TSVNVPSNGESNNNNNSNNGSGSGNQENQLSMGGGAVMGLAADQGATEILLGRLIEKGVR 120
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL-GGE 175
S A+D ESLC++AG+ WA+R D+ L+ GNLVDAA+IA + +LL FR+P+ L G
Sbjct: 121 RSNALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSG 180
Query: 176 DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES------------------------ 211
+ E+I++ ++RE +PL I H+PI VTF FFS+ES
Sbjct: 181 EGTELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSNNG 240
Query: 212 -----------------------LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
++++D T EE + G MT TLN+N ++C I K GG
Sbjct: 241 DEGDDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSGGL 300
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
V +++C ++AS++ TK+IK +
Sbjct: 301 NVDSKKVLECCQIASKIVDKWTKQIKQVL 329
>gi|163311573|gb|ABY26746.1| Rrp45p, partial [Pichia kudriavzevii]
Length = 353
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 154/329 (46%), Gaps = 105/329 (31%)
Query: 54 QLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPS--------FETGRPS---- 101
+LG+T++ V+ Q+ QPY DRP EGT +I TE + M P+ F T P+
Sbjct: 1 KLGETYVSCKVSAQITQPYEDRPFEGTFAISTEITAMCSPAFSNSNNTDFSTAAPAIVPA 60
Query: 102 ---------------------------------------------ESAVELGRIVDRGLR 116
+ + LGR++++G+R
Sbjct: 61 TSVNVPSNEESNNNNNSNNGSGSGNQENQLSMGGGAVMGLAADQGATEILLGRLIEKGVR 120
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL-GGE 175
S A+D ESLC++AG+ WA+R D+ L+ GNLVDAA+IA + +LL FR+P+ L G
Sbjct: 121 RSNALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSG 180
Query: 176 DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES------------------------ 211
+ E+I++ ++RE +PL I H+PI VTF FFS+ES
Sbjct: 181 EGTELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSNNG 240
Query: 212 -----------------------LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
++++D T EE + G MT TLN+N ++C I K GG
Sbjct: 241 DEGDDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSGGL 300
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
V +++C ++AS++ TK+IK +
Sbjct: 301 NVDSKKVLECCQIASKIVDKWTKQIKQVL 329
>gi|448522633|ref|XP_003868739.1| hypothetical protein CORT_0C04610 [Candida orthopsilosis Co 90-125]
gi|380353079|emb|CCG25835.1| hypothetical protein CORT_0C04610 [Candida orthopsilosis]
Length = 329
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 167/322 (51%), Gaps = 42/322 (13%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRID--GRNPF-EYRKLSIKFG-REDGSSEVQLGQTHI 60
++ T +T N++ F+ AL + +R++ PF +R +SI E G EV G+T +
Sbjct: 1 MSRTAEITTNQRNFLHYALQNNLRLNPPTNRPFLAHRPISIYLSPTEYGYVEVSWGKTKL 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVEL-GRIVDRGLRESR 119
VT Q+V+PY DRP EG +I +E SP A F+T R + L RI+++ +R S
Sbjct: 61 SVRVTAQIVKPYPDRPFEGIFTINSEISPQASLKFDTTRAQQQDETLVSRILEKAIRRSN 120
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
AVD ESLC++AG VW + +DL+ + GNL+D A + SLL FR+P+ S+ G+ E
Sbjct: 121 AVDLESLCIIAGDKVWELVVDLNFWNYDGNLIDVGCFATMLSLLHFRKPDISINGD---E 177
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFF-------------------------------- 207
++VH ER+P+ L I H+PI +TF F+
Sbjct: 178 IVVHDENERQPVSLSILHVPICLTFSFYNLSSQEMNIKGGGATGATGANDDTGVYQDGPD 237
Query: 208 SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV-LQSVIMQCLRLASRMA 266
+ E + + D EE++ G +T TLN N +V + K GG + Q ++ C + ++
Sbjct: 238 NDEEICLFDADALEESLRQGSLTITLNKNREVIQLSKNGGVPIDAQQLLDLCFE-SMKIV 296
Query: 267 SDITKKIKDAVETYNTERALRK 288
++T+ IK ++ + R R+
Sbjct: 297 DELTQLIKTEIKQHEEMRYKRE 318
>gi|195379528|ref|XP_002048530.1| GJ11305 [Drosophila virilis]
gi|194155688|gb|EDW70872.1| GJ11305 [Drosophila virilis]
Length = 423
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 164/311 (52%), Gaps = 19/311 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI+ A+ R DGR E+R + + FG + G+ V +G+T ++ V+ + P
Sbjct: 16 ERNFIQGAVKQNTRFDGRKSNEFRDVKLTFGADWGTVAVSIGETKVLAQVSCDIGTPSSA 75
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R NEGTL + + +A + + L +++R + SR +D ESLC+ + V
Sbjct: 76 RANEGTLFLNVDIKGVAFLDEAQATHDQRFLTLNSLLERTFKSSRCLDLESLCIAVEQSV 135
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+D+++L++ GNL DA+ IAALA+L+ FRRPE S E E+ ERE LPL+
Sbjct: 136 WCVRVDINVLNHDGNLYDASTIAALAALMHFRRPEVSYVEE---EIRTFSERERELLPLL 192
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
H P++VT+ + S S ++DPT EE + + N+ ++C + G
Sbjct: 193 FLHYPVSVTYCVYKSSSQPLVDPTLLEENAADSVIVLSFNSYQELCTLNAGGTAPTNVRT 252
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKLNEPSGH 314
IMQC R A+ + + + I+ A+E + ER ++ P + G V+L LNE +
Sbjct: 253 IMQCARSAASRSKALVQFIRKALE-LDAER-----RQQPNQVA--GLVDL---LNESAP- 300
Query: 315 NVVNELSRKHL 325
+LS KHL
Sbjct: 301 ----QLSFKHL 307
>gi|119625654|gb|EAX05249.1| exosome component 9, isoform CRA_c [Homo sapiens]
Length = 377
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 49/251 (19%)
Query: 28 RIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEF 87
R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV P +R EG L E
Sbjct: 7 RLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLEL 66
Query: 88 SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG 147
S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+AG+
Sbjct: 67 SQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGE--------------- 111
Query: 148 GNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF 207
+ PEER+P+PL IHH+PI V+F FF
Sbjct: 112 ----------------------------------KYTPEERDPVPLSIHHMPICVSFAFF 137
Query: 208 SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
+ L++DP EE VM G + +N + ++C IQ GG +L+ +++C ++A +
Sbjct: 138 QQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVA 197
Query: 268 DITKKIKDAVE 278
+IT+ I A+E
Sbjct: 198 EITELILKALE 208
>gi|195351560|ref|XP_002042302.1| GM13365 [Drosophila sechellia]
gi|194124145|gb|EDW46188.1| GM13365 [Drosophila sechellia]
Length = 405
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 14/292 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F++ A+ R+DGR E R + + FG + GS V +G T +M VT ++ P
Sbjct: 16 ERSFVQLAVKQNQRLDGRRSNESRDVELTFGTDWGSVAVSMGDTKVMAQVTCEMGPPALS 75
Query: 75 RPNEGTLSIFTEFSPMA--DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
RPNEG L + +A D ++ T + +++L +++R R S+++D ESLCV A K
Sbjct: 76 RPNEGKLHLNVLLGGVAFLDEAYSTH--DQRSLKLNSLLERTFRSSKSIDLESLCVAAEK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW IR++++++++ GNL DA++IA LA+L+ FRRP+ S D E+ + ERE +P
Sbjct: 134 HVWCIRVNVNVINHDGNLYDASSIATLAALMHFRRPDVSY---KDGELCIFKQNEREFMP 190
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L+ HH P++VT+ + S ++DPT EE + + N+ ++C++ G
Sbjct: 191 LLFHHYPVSVTYCVYKSSGQPILDPTLLEENAADSVIVLSFNSYQELCSLTAGGTAPTNA 250
Query: 253 SVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNL 304
+MQC R A+ + ++ A+ AL + R ++DG V L
Sbjct: 251 PTVMQCARNAAARCKSLLDFVRKAL-------ALDEECRSQGDRSVDGLVGL 295
>gi|390939120|ref|YP_006402858.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
gi|390192227|gb|AFL67283.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
Length = 286
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 155/261 (59%), Gaps = 13/261 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I ++ G RIDGR +YR + + + GSS V+LG T ++ V +L +P+ DR
Sbjct: 19 IVKSIKKGERIDGRGLTDYRPIEVILNPITKASGSSLVKLGGTQVIAGVKLELEEPFPDR 78
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P EG L + EF P+A PSFE G P E+A+E+ R++DR LRES+AV ++L + GK+ W
Sbjct: 79 PGEGVLQVHAEFVPLASPSFEPGPPDENAIEVARVIDRSLRESKAVKLDALAIEPGKIAW 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
++ D++++D+ GN++D + +A++ +L T R PE + GE+ +V + PL I
Sbjct: 139 SVYTDIYLVDHQGNIIDTSMLASMLALATSRIPEL-IKGENGYKV----DHTKYVGPLPI 193
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
+ L VT G ++ ++++DP EEAV+ +T ++ +G +C IQK G +G +S++
Sbjct: 194 NTLVATVTMGIYN--DVIIVDPLLEEEAVIDSFITIAIDESGRICGIQKRGMKGFSRSIL 251
Query: 256 MQCLRLA---SRMASDITKKI 273
+ +A R D+ KKI
Sbjct: 252 DNAVEIALSKGRELVDLMKKI 272
>gi|195128659|ref|XP_002008779.1| GI11625 [Drosophila mojavensis]
gi|193920388|gb|EDW19255.1| GI11625 [Drosophila mojavensis]
Length = 417
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 149/274 (54%), Gaps = 4/274 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+E+ FI++A+ R DGR E+R + + FG + G+ V +G T ++ V+ + P
Sbjct: 15 SERSFIQSAVKQNTRFDGRKANEFRDVKLTFGSDWGTVAVSMGDTKVLAQVSCDIGTPSS 74
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
R NEGTL + + +A + + L +++R R SR +D ESLC+ +
Sbjct: 75 ARANEGTLYLNVDIKGVAFLDEIQSTHDQRFLTLNSLLERTFRSSRCLDLESLCIAVEQH 134
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW +R+D+++L++ GNL DA+ IAALA+L+ FRRPE S E ++ ERE +PL
Sbjct: 135 VWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPEVSYAEE---KIHTFSERERELMPL 191
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ H P++VT+ + S S ++DPT EE + + N+ ++C + G
Sbjct: 192 LFLHYPVSVTYCLYKSSSNPLVDPTLLEENAADSIIVLSFNSYQELCTLNAGGTAPTNVR 251
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTERALR 287
IMQC R A+ + + + I+ A+E + ER L+
Sbjct: 252 TIMQCARSAANRSKALVQFIRKALE-LDAERRLQ 284
>gi|163311569|gb|ABY26743.1| Rrp45p, partial [Pichia kudriavzevii]
Length = 353
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 154/329 (46%), Gaps = 105/329 (31%)
Query: 54 QLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPS--------FETGRPS---- 101
+LG+T++ V+ Q+ QPY DRP EGT +I TE + M P+ F T P+
Sbjct: 1 KLGETYVSCKVSAQITQPYEDRPFEGTFAISTEITAMCSPAFSNSNNTDFSTAAPAIVPA 60
Query: 102 ---------------------------------------------ESAVELGRIVDRGLR 116
+ + LGR++++ +R
Sbjct: 61 TSVNVPSNGESNNNNNSNNGSGSGNQENQLSMGGGAVMGLAADQGATEILLGRLIEKSVR 120
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL-GGE 175
S A+D ESLC++AG+ WA+R D+ L++ GNLVDAA+IA + +LL FR+P+ L G
Sbjct: 121 RSNALDLESLCIIAGQKCWAVRADVRFLNSDGNLVDAASIAVITALLHFRKPDVELVGSG 180
Query: 176 DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES------------------------ 211
+ E+I++ ++RE +PL I H+PI VTF FFS+ES
Sbjct: 181 EGTELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSNNG 240
Query: 212 -----------------------LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
++++D T EE + G MT TLN+N ++C I K GG
Sbjct: 241 DEGDDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSGGL 300
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
V +++C ++AS++ TK+IK +
Sbjct: 301 NVDSKKVLECCQIASKIVDKWTKQIKQVL 329
>gi|432328766|ref|YP_007246910.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
gi|432135475|gb|AGB04744.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
Length = 270
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 145/266 (54%), Gaps = 22/266 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++++I S G R+DGRN E R+L I K R +GS+ V+LG+T ++ V + P
Sbjct: 15 QRKYIHKLASQGTRVDGRNFDEIRELKIVRGKIPRAEGSALVELGRTKVLVGVKIEPGTP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P +G L+ E SPMA P+FE G P E A+EL R+VDRG+RE A+D E L + G
Sbjct: 75 FPDTPAQGILTTNAELSPMASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW + ID+H+LD GNL DA+ ALA+L P H E E
Sbjct: 135 EQVWVVFIDIHVLDYDGNLFDASGYGALAALTEATVPAAK-----------H--ELGEDF 181
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
L + H P+ VTF + LV DP EE++ ++T T N G + A+QK G+
Sbjct: 182 KLPVQHYPVPVTFAKIG--NWLVADPNLDEESIASARLTVTTNEEGKINAMQK----GLS 235
Query: 252 QSVIMQCLRLASRMASDITKKIKDAV 277
+ + ++ A M+ DI +K++D +
Sbjct: 236 GTFTYEEVQKAINMSMDIGRKVRDII 261
>gi|337283875|ref|YP_004623349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
gi|334899809|gb|AEH24077.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
Length = 268
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 154/263 (58%), Gaps = 10/263 (3%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I + L G RID R +YR + I+ G + +GS+ V+LG T ++ + L +P+ D
Sbjct: 12 ILSILKEGKRIDDRGFEDYRPIEIQVGVIEKAEGSALVKLGNTQVLVGIKLDLGEPFPDT 71
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
PN G ++ E P+A P+FE G P E A+EL R+VDRG+RES+A+D E L ++ GKLV
Sbjct: 72 PNMGVMTTNVELVPLASPTFEPGPPDERAIELARVVDRGIRESKALDLEKLVIVPGKLVR 131
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ ID+H+LD+ GNL+DA IAA+A+LL + P+ E I+ +E EPLP +
Sbjct: 132 VVFIDVHVLDHDGNLMDAIGIAAIAALLNAKMPKVEYDEEKGEVTIL---DEWEPLP--V 186
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
+PI VTF LV+DP EE VM GK+T T + G + A+QK G +
Sbjct: 187 QKIPIPVTFAKIGGT--LVVDPNLEEEQVMDGKLTITTDETGHISAVQKSEGGAFKLEEV 244
Query: 256 MQCLRLASRMASDITKKIKDAVE 278
M + +A + A +I K I +AV+
Sbjct: 245 MYAVEVAFKKAEEIRKLILEAVQ 267
>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
Length = 263
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 153/259 (59%), Gaps = 11/259 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
K + + +G R DGR EYR++S++ G + +GS+ V++G T I+ Q+ P+
Sbjct: 10 KESVTNLVKNGERTDGRAFDEYREISLEAGVIEKAEGSARVKIGNTQIIIGAKPQIGTPF 69
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G L TE PMA P+FE+G P E++VEL R+ DR +RE VD E LC++ G+
Sbjct: 70 GDTPNVGVLMTNTELLPMAAPNFESGPPDENSVELSRVTDRCIREGEVVDLEKLCIVPGE 129
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW I +DLH++D GNL+DAA + ++A+L+ R PE + D EV++ + +P
Sbjct: 130 KVWMIFLDLHVVDYDGNLMDAAVLGSVAALMNTRLPEAKI---IDDEVVL---DYDNLIP 183
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L I+ + TF E L+IDP+ EE VM +++ + +G++CA+QK G + + Q
Sbjct: 184 LPINDTALMSTFAKIGEE--LIIDPSLEEEEVMGARLSIGITKDGNICAMQKGGEKTLTQ 241
Query: 253 SVIMQCLRLASRMASDITK 271
+++ + +A +++ K
Sbjct: 242 EEVLKAVSIAKIKTAELRK 260
>gi|195457250|ref|XP_002075492.1| GK14785 [Drosophila willistoni]
gi|194171577|gb|EDW86478.1| GK14785 [Drosophila willistoni]
Length = 415
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 147/264 (55%), Gaps = 4/264 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ FI++A R+DGR ++R + + FG + G+ V +G T ++ V+ + P
Sbjct: 16 ERNFIQSAAKQNTRLDGRKSGDFRDVKLTFGADWGTVIVAIGDTKVLAQVSCDIGTPSSA 75
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEGTL + +A + + + L +++R R SR++D ESLCV A + V
Sbjct: 76 RPNEGTLHLNVSLGGVAYLNESQTTHDQRFLTLNSLLERTFRNSRSLDLESLCVAAEQHV 135
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+D+ +L++ GNL DA+ +AALA+L+ FRRP+ + E E+ ++ +ERE +PL+
Sbjct: 136 WCVRVDITVLNHDGNLYDASTVAALAALMHFRRPDVTFLDE---EIRIYSDKERELIPLL 192
Query: 195 IHHLPIAVTFGFFSSESLL-VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
H P++VT+ + S S +DP EE + + N+ ++C++ G
Sbjct: 193 FLHYPVSVTYCLYKSNSHYPYVDPILLEENAADSIIVLSFNSYNELCSLNAGGSTPTKAG 252
Query: 254 VIMQCLRLASRMASDITKKIKDAV 277
+IMQC R A++ + + +K A+
Sbjct: 253 IIMQCARNAAKRSKSLVDFLKKAL 276
>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
Length = 261
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 149/262 (56%), Gaps = 20/262 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
++ +I + G R DGR E R ++++ G + +GS+ VQ G T +M V Q+ P
Sbjct: 11 KRDYIYNLMLKGEREDGRQFNELRDIALETGIIDKAEGSAMVQYGDTQVMVGVKMQVGTP 70
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P EG + E +P+A P FE G P E A+E+GRIVDRG+RES A+D LC+ G
Sbjct: 71 FPDSPAEGVIITSMELNPIASPDFEAGPPREKAIEMGRIVDRGIRESGAIDINKLCITEG 130
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+H+L+N GN++DAA++ A+A+L+T P G GED
Sbjct: 131 EEVWMVFIDVHVLNNSGNILDAASLGAIAALMTTTVPSEREGKGED-------------- 176
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
P+ + +P+ V+ E +V+DPT+ EE+V ++T + N +G +C++QK G +
Sbjct: 177 YPMPVREMPVGVSLVKIGDE--MVLDPTYGEESVCETRITISSNQDGSICSMQKSGSGSL 234
Query: 251 LQSVIMQCLRLASRMASDITKK 272
+ +++ ++A I +K
Sbjct: 235 SPAQVVKASKIAKEKGEIIREK 256
>gi|198471344|ref|XP_001355587.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
gi|198145876|gb|EAL32646.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
Length = 398
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 151/281 (53%), Gaps = 4/281 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
T E++FI+ A+ R+DGR E R + + FG E GS V LG T +M VT + P
Sbjct: 13 TKTERKFIQQAVKQSQRLDGRKSGESRDVQLTFGGEYGSVVVSLGDTKVMAQVTCDMGTP 72
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
RPNEG L ++ + ++ + ++ L +++R R SR VD ESLCV +
Sbjct: 73 TTSRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASE 132
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
VW IR+D+++L++ GNL DA+ +A LA+L+ FRRP+ + D E+ + +ER+ +
Sbjct: 133 LHVWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPDVTFT---DGELRTYTEKERDMI 189
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL+ H P++VT+ ++S +DPT EE + + N+ ++C + G
Sbjct: 190 PLLFLHYPVSVTYCIYTSNFQPFVDPTLLEENTADSTIILSFNSYQELCTLNAGGTVPTD 249
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRH 292
IMQC R A+ + I+ A++ + ++ L KR+
Sbjct: 250 VRTIMQCARSAANRCKAMVTFIRKALDQ-DEQQCLEGSKRN 289
>gi|145349570|ref|XP_001419203.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579434|gb|ABO97496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 146/258 (56%), Gaps = 9/258 (3%)
Query: 42 IKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR-DRPNEGTLSIFTEFSPMADPSF-ETGR 99
IK G +G V+LG+T + L +P +EG L + EFS A F GR
Sbjct: 1 IKLGPLEGVCVVRLGRTIACASTSAMLERPQSAGASSEGVLRVDCEFSSGACEGFAREGR 60
Query: 100 PS----ESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAAN 155
+ + A +LG +++RGL+++RAVD ESLCVLAGK VW + + IL + GNL AA+
Sbjct: 61 ANRETRQRAKDLGALLERGLKDARAVDVESLCVLAGKRVWVVTCAVTILAHDGNLAGAAS 120
Query: 156 IAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS-ESLLV 214
+AA SL+T+RRPEC++ + V VH + RE +PL +HH PIA T+ FF L V
Sbjct: 121 LAACGSLMTYRRPECAV-DPNTGTVTVHSADAREAIPLNMHHFPIASTYCFFDEVPGLAV 179
Query: 215 IDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
DPT EE + +N + +VCA+ K G GV + +C+R ASR A + T+ +K
Sbjct: 180 ADPTLEEEVTADASIVVVVNTHDEVCALSKT-GNGVPSEDLKRCVRNASRTAREWTELLK 238
Query: 275 DAVETYNTERALRKIKRH 292
+A + +R K++ H
Sbjct: 239 EAAADFEADRLANKVRTH 256
>gi|195168570|ref|XP_002025104.1| GL26867 [Drosophila persimilis]
gi|194108549|gb|EDW30592.1| GL26867 [Drosophila persimilis]
Length = 398
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 144/267 (53%), Gaps = 3/267 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
T E++FI+ A+ R+DGR E R + + FG E GS V LG T +M VT + P
Sbjct: 13 TKTERKFIQQAVKQSQRLDGRKSGESRDVQLTFGGEYGSVVVSLGDTKVMAQVTCDMGTP 72
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
RPNEG L ++ + ++ + ++ L +++R R SR VD ESLCV +
Sbjct: 73 TTSRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERTFRTSRCVDLESLCVASE 132
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
VW IR+D+++L++ GNL DA+ +A LA+L+ FRRP+ + D E+ + +ER+ +
Sbjct: 133 LHVWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPDVTFT---DGELRTYTEKERDMI 189
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL+ H P++VT+ ++S +DPT EE + + N+ ++C + G
Sbjct: 190 PLLFLHYPVSVTYCIYTSNFQPFVDPTLLEENTADSTIILSFNSYQELCTLNAGGTVPTD 249
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVE 278
IMQC R A+ + ++ A++
Sbjct: 250 VRTIMQCARSAANRCKAMVTFVRKALD 276
>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
2088]
gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
2088]
Length = 270
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 143/239 (59%), Gaps = 12/239 (5%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
K I + +S+ R+DGR+ +E+R + IK G + +GS+ V+LG T ++ V + +P+
Sbjct: 14 KEDIISLISNNKRLDGRSFYEFRDIKIKTGVISKAEGSARVKLGDTQVLVGVKPTIGEPF 73
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G + +E PMA P+FE G P E ++EL R+VDR +RES +D E LC++ G+
Sbjct: 74 PDNPNLGIIITNSELLPMASPTFEPGPPDERSIELARVVDRCIRESNMLDLEKLCIIEGE 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW + IDLHILD GNL DA+ + A+A+L+ + P+ S+ EDD VI E
Sbjct: 134 KVWILFIDLHILDYDGNLFDASVLGAVAALMDTKLPKVSI--EDDEVVIDDSSVEL---- 187
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
L I TF E LV+DP+ EE ++ +++ +N+ G +CA+QK GG+G L
Sbjct: 188 LDIKDKVAMCTFAKIGDE--LVLDPSLEEEEILTARLSIGMNSEGKICAMQK-GGKGSL 243
>gi|336477102|ref|YP_004616243.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
gi|335930483|gb|AEH61024.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
Length = 255
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 151/261 (57%), Gaps = 20/261 (7%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K +I + G R D R + R + ++ + +GS++VQ G+T ++ + Q P+
Sbjct: 6 KDYIYNLMLKGQREDHREFDQLRDIKVETDVVEKAEGSAKVQFGETQLIAGIKLQTGTPF 65
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P+EG + E +P+A P FE G P+E+AVE+ R+VDRG+RES +D + LC+ G+
Sbjct: 66 PDSPDEGVIITSMELNPIASPFFEPGPPNENAVEMSRVVDRGIRESGTIDLKKLCITEGE 125
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREPL 191
VW + ID+H+L++GGN++DAA++ A+A+L+T + P + G GED +
Sbjct: 126 EVWMVFIDIHVLNDGGNILDAASLGAIAALMTAKIPRETKGYGED--------------I 171
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P+ + +P+AV+ E L++DPT EE + K+T N +G +CA+QK G +
Sbjct: 172 PVPVREMPVAVS--LVDIEGQLMVDPTIDEETICDTKLTIISNQDGSICAMQKSGNGALS 229
Query: 252 QSVIMQCLRLASRMASDITKK 272
+ + + A+ AS+I ++
Sbjct: 230 TDQVFEAVETATEKASEIREQ 250
>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
Length = 260
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 142/262 (54%), Gaps = 22/262 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K ++ + G R DGR ++R + ++ + DGS+ VQ+G T ++ V + +P+
Sbjct: 11 KDYVYDLIEKGKRADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGEPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN+G L E P+A P FE+G P+E+++EL R+VDRG+R S +D E LC+ G+
Sbjct: 71 SDTPNKGILMTNAELVPLASPEFESGPPNENSIELARVVDRGIRGSETIDLEKLCIEEGE 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSLGGEDDLEVIVHPPEEREP 190
VW + ID+H LDN GNLVDAA + A+ SLL P + L GED L+
Sbjct: 131 KVWMLFIDIHTLDNDGNLVDAAALGAITSLLNVAIPYEQYGLTGEDTLQ----------- 179
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
I P+AVT L++DP +EE+ K+T NA+G + +QK G G+
Sbjct: 180 ----IRDTPVAVTVVEIGGN--LLVDPNVYEESAATSKLTVISNADGSISGLQKSGSNGL 233
Query: 251 LQSVIMQCLRLASRMASDITKK 272
+ I++ + A +I +K
Sbjct: 234 TEEKIVKMAEIGIEKAREIREK 255
>gi|195480861|ref|XP_002101422.1| GE15642 [Drosophila yakuba]
gi|194188946|gb|EDX02530.1| GE15642 [Drosophila yakuba]
Length = 415
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 142/263 (53%), Gaps = 3/263 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F++ A+ R DGR E R + + FG + G+ V +G T ++ VT + P
Sbjct: 16 ERSFVQLAVKQNQRFDGRRSNECRDVELTFGADWGTVAVSMGDTKVLTHVTCDMGAPATS 75
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L + +A + ++ L +++R R SR+VD ESLCV A + V
Sbjct: 76 RPNEGKLQLNVNLGGVAFLDEVQTTHDQRSLTLNSLLERTFRSSRSVDLESLCVAAEQHV 135
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W IR+D+++L++ GNL DA+ IA LA+L+ FRRP+ + D E+ ++ +ERE +PL+
Sbjct: 136 WCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFT---DDELRIYTEKEREFIPLL 192
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
H P++VT+ + S ++DPT EE + + N+ ++C++ G
Sbjct: 193 FLHYPVSVTYCIYKSSGQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGTAPTNVRT 252
Query: 255 IMQCLRLASRMASDITKKIKDAV 277
IMQC R A+ + ++ A+
Sbjct: 253 IMQCARNAATRCKSLVDFVRKAL 275
>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 156/260 (60%), Gaps = 12/260 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR + I+ G + +GS+ V+LG T ++ + L +P+ D PN G
Sbjct: 22 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 81
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RES+A++ E + ++ GK+V + I
Sbjct: 82 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 141
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+ GNL+DA IAA+A+LL R P+ E ++E + +E EPLP + +
Sbjct: 142 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETL----DETEPLP--VEKI 195
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
P+ VTF ++LV+DP+ EE VM GK+T T + G + A+QK G +M
Sbjct: 196 PVPVTFAKIG--NILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYA 253
Query: 259 LRLASRMASDITKKIKDAVE 278
+ A + A +I K I +AVE
Sbjct: 254 VETAFKKAEEIRKLILEAVE 273
>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
gi|29337009|sp|Q9V118.1|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
gi|380741369|tpe|CCE70003.1| TPA: exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi
GE5]
Length = 274
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 156/260 (60%), Gaps = 12/260 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR + I+ G + +GS+ V+LG T ++ + L +P+ D PN G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RES+A++ E + ++ GK+V + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+ GNL+DA IAA+A+LL R P+ E ++E + +E EPLP + +
Sbjct: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETL----DETEPLP--VEKI 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
P+ VTF ++LV+DP+ EE VM GK+T T + G + A+QK G +M
Sbjct: 193 PVPVTFAKIG--NILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYA 250
Query: 259 LRLASRMASDITKKIKDAVE 278
+ A + A +I K I +AVE
Sbjct: 251 VETAFKKAEEIRKLILEAVE 270
>gi|409096212|ref|ZP_11216236.1| exosome complex RNA-binding protein Rrp42 [Thermococcus zilligii
AN1]
Length = 276
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 152/254 (59%), Gaps = 10/254 (3%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I + L G R+DGR +YR + I+ G + +GS+ V+LG T ++ V + +P+ D
Sbjct: 15 ILSLLKDGKRLDGRGLEDYRNIEIRTGLIEKAEGSALVKLGDTMVLVGVKVEFGEPFPDL 74
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P G ++ E P+A P+FE G P E AVEL RIVDRG+RES A+D + L ++ GKLV+
Sbjct: 75 PERGVMTTNVELVPLASPTFEPGPPDERAVELARIVDRGIRESNAIDLDKLVIVPGKLVY 134
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ ID+H+LD+ GNL+DAA +AA+A+L+T + P E + ++ E EPLP +
Sbjct: 135 VLFIDVHVLDHDGNLIDAAGLAAMAALMTTKIPRVQYNAETGELIKLN---ELEPLP--V 189
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
+H+P+ VTF S LV+DP+ EE VM ++T T + G + A+QK G I
Sbjct: 190 NHVPVPVTFAKIGSS--LVVDPSLEEETVMDSRLTITTDETGHISAVQKGEGGAFKLEEI 247
Query: 256 MQCLRLASRMASDI 269
M + A + AS+I
Sbjct: 248 MYAVDTAFKKASEI 261
>gi|24642649|ref|NP_573163.1| Rrp45 [Drosophila melanogaster]
gi|19527801|gb|AAL90015.1| AT07738p [Drosophila melanogaster]
gi|22832411|gb|AAF48665.2| Rrp45 [Drosophila melanogaster]
gi|220949552|gb|ACL87319.1| Rrp45-PA [synthetic construct]
gi|220958432|gb|ACL91759.1| Rrp45-PA [synthetic construct]
Length = 412
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 145/263 (55%), Gaps = 3/263 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F++ A+ R+DGR E R + + FG++ GS V +G T ++ VT ++ P
Sbjct: 16 ERSFVQLAVKQNQRLDGRRSNESRDVELTFGKDWGSVAVSMGDTKVLAQVTCEMGPPALS 75
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG + + +A + +++L +++R R SR++D ESLCV K V
Sbjct: 76 RPNEGKIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHV 135
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W IR+++++L++ GNL DA+ IA LA+L+ FRRP+ D E+ + +ERE +PL+
Sbjct: 136 WCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPDVWY---KDGELRIFKKKEREFIPLL 192
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
HH P++VT+ + S ++DPT EE + + N+ ++C++ G +
Sbjct: 193 FHHYPVSVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNARI 252
Query: 255 IMQCLRLASRMASDITKKIKDAV 277
IMQC R A+ + ++ A+
Sbjct: 253 IMQCARNAAVRCKSLLNFVRKAL 275
>gi|340505571|gb|EGR31888.1| hypothetical protein IMG5_100370 [Ichthyophthirius multifiliis]
Length = 355
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 19/252 (7%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L N+K F +L +R+DGR RK+ + FG G E+ G THI +
Sbjct: 4 LNQNDKEFCLKSLEQELRLDGRTLLNSRKIEVHFGLNPGEIELISGDTHIATKTHSSITD 63
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRP-SESAVELGRIVDRGLRES----------- 118
P +++PNEG L + S D + + E + E+ +++++ ++ S
Sbjct: 64 PKKEKPNEGFLFFKVDLSSTQDEQQQNLQNFKEYSNEIQKLLEKIIKGSKQFFQFKTKQK 123
Query: 119 ---RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE 175
RA+D SLC++ GK VW I ++ ++ NGGNL+D + + SLL FR+P S+ E
Sbjct: 124 IYKRAIDVASLCIITGKKVWNITVETSVISNGGNLIDNIYLCVMISLLHFRKPYISI--E 181
Query: 176 DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA 235
++ +HP ++ P PL IHH+PI TF F + +LLV DP EE +M G++T ++N
Sbjct: 182 QQSKIKIHP--DKNPQPLSIHHMPIPFTFALFKNATLLVADPLAQEEQLMEGRITISVNI 239
Query: 236 NGDVCAIQKPGG 247
D+C I KPGG
Sbjct: 240 YNDICNIHKPGG 251
>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
DSM 5348]
gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
5348]
Length = 280
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 149/262 (56%), Gaps = 14/262 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I L G R DGR +YR LSI G + DGS+ V+LG T ++ V + +P
Sbjct: 15 KKESIIALLERGTRSDGRKFTDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKVEEDEP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+AVD L + G
Sbjct: 75 YPDTPNQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKAVDLSGLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+ +LD GGN++DA IAA+A+L + P+ E+D +I+ E+ PL
Sbjct: 135 KKVWTVWVDISVLDYGGNVLDACTIAAVAALYDAKLPKVV--REND-NIIIQKEEKVTPL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P+ P+ VT LV+DP EE +M K++ + +G++ IQK GEG
Sbjct: 192 PI---KYPV-VTVSVAKIGKFLVVDPDLEEEGIMDAKISFSYIPSGNIVGIQK-SGEG-- 244
Query: 252 QSVIMQCLRLASRMASDITKKI 273
S Q + +A MAS ++K+
Sbjct: 245 -SFSQQEVEVAEGMASATSQKL 265
>gi|414585472|tpg|DAA36043.1| TPA: hypothetical protein ZEAMMB73_365008 [Zea mays]
Length = 217
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 93/117 (79%)
Query: 162 LLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHE 221
L TF RPEC++GG+D +V VH PE R+PLPL IHH+PIAVTF +F +++V+DPT+ E
Sbjct: 92 LSTFWRPECTVGGDDGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKE 151
Query: 222 EAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
EAVM G+MTA +N+NGDVCAIQK GGEG++ SV MQCLR+A +DIT KIK A+E
Sbjct: 152 EAVMGGRMTAIVNSNGDVCAIQKAGGEGLMSSVTMQCLRIAPVKVADITSKIKKALE 208
>gi|343426851|emb|CBQ70379.1| probable RRP45-Exosome complex exonuclease [Sporisorium reilianum
SRZ2]
Length = 316
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 160/298 (53%), Gaps = 33/298 (11%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+V E F + L SG+R+DGR+ R + I FG E G+ V + T + V L+ P
Sbjct: 10 SVTESEFTLSCLQSGVRVDGRSFLSARDIDISFGEELGNVSVTIKGTRVSTSVKATLIPP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFET--GRPSESA----VELGRIVDRGLRESRAVDTES 125
DRP EG L I T+ SPMA ++T G + SA V R++++ +R + AVD E+
Sbjct: 70 RSDRPYEGFLQITTDISPMAGIEYDTTGGGANSSARAREVLFERLIEKAVRRTEAVDREA 129
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP 185
LCV+AG+ VW + + +H+L + G +DAA + ++ SL FRRP+ ++ ++ V +
Sbjct: 130 LCVVAGEQVWNVHLSVHLLSDTGAALDAAVLCSMLSLRHFRRPDYAI--DNGTHVHLFST 187
Query: 186 EEREPLPLIIHHLPIAVTFGFFSS-----------ESLL--------------VIDPTHH 220
+ER P+PL IHH P+ VTF F++ +SL+ ++DPT
Sbjct: 188 DERVPVPLAIHHTPLCVTFAIFNNLPAASSTKTDKDSLIDPSSSSFAPASTAALLDPTLL 247
Query: 221 EEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
EE++ K+T LNA ++C + K G + +++ +++ +T+ ++ A++
Sbjct: 248 EESLATSKLTLVLNAQREICVLDKSYGSPIQPQLLLDLIQVGLNRVQQLTQTLEQALK 305
>gi|258574161|ref|XP_002541262.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901528|gb|EEP75929.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 282
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 137/243 (56%), Gaps = 13/243 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A L+ NE+ FI AL +R+DGR ++R L++ FG E G ++ +
Sbjct: 1 MAKDTELSANERAFILEALQKNVRLDGRPLDQFRSLNLTFGDEYG----------VIVRI 50
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+ ++ P +R ++G ++ E + MA P FETGR S+S +L R +D+ +R S A+DTE
Sbjct: 51 SAEVTAPRPERESDGIFTVSIELNDMAIPGFETGRQSDSETQLSRTLDKIVRRSNALDTE 110
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
SLC+ G W +R D+HI+D G LVD +A +A+LL FR PE ++ D +V V+
Sbjct: 111 SLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAALLHFRLPESTVR---DGKVTVYS 167
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
EE+ P+PL + +P++VTF + ++D T EEAV G + L+ G++ K
Sbjct: 168 AEEKVPVPLNLTKVPLSVTFNLYDEGKTTLLDATSSEEAVSEGSLIIALDKTGEIALYSK 227
Query: 245 PGG 247
G
Sbjct: 228 ADG 230
>gi|124514000|ref|XP_001350356.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
gi|23615773|emb|CAD52765.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
Length = 477
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 154/290 (53%), Gaps = 10/290 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLS 82
+ IR+DGR + R + I F ++ G E+ +G T ++ +T ++V+P+ + EG L
Sbjct: 15 IKKNIRLDGRTFEDSRNVCINFLKDYGHVEISIGFTKVICKITSEIVKPHDRKLKEGILK 74
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
I + + + + S+ +E+ I+DR L+ S ++ ESLC++ GK VW I I++
Sbjct: 75 INLDIDNFIEDNENSDNMSDECLEIKNIIDRVLKTSNIINFESLCIIPGKKVWCICINIM 134
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAV 202
+++N GNL DA ++A L+ F+ + + D I+ EE PL I + PI
Sbjct: 135 VIENDGNLTDACYLSAYCGLVHFKNHQVRVIKNGD---IIIDKEEINYSPLSILNSPIVT 191
Query: 203 TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLA 262
TF ++ + +IDP HEE M K++ LN NG++ ++ KPGG + S IM+ + +A
Sbjct: 192 TFAYYEEHDVCLIDPCLHEEEFMSSKISIALNKNGNLISLLKPGGIPLACSHIMESIEIA 251
Query: 263 SRMASDITKKIKDAVE------TYNTERALR-KIKRHPTSITLDGSVNLK 305
+ I K ++D +E +Y T+R L K P +I D S LK
Sbjct: 252 KKRILTILKILEDTLEEDKNIRSYLTKRNLHVKYSSAPVTIRYDNSFKLK 301
>gi|195020434|ref|XP_001985193.1| GH14641 [Drosophila grimshawi]
gi|193898675|gb|EDV97541.1| GH14641 [Drosophila grimshawi]
Length = 415
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 147/265 (55%), Gaps = 3/265 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+E+ F+++A+ IR DGR E+R + + FG + G+ + +G T ++ V+ + P
Sbjct: 15 SERTFVQSAVKQNIRFDGRKSNEFRDVKLTFGADWGTVALSMGDTKVLAQVSCDIGTPSS 74
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
R NEGTL + + +A + + L +++R R SR +D ESLC+ +
Sbjct: 75 ARGNEGTLHLNVDIKGVAFLDEVQATHDQRQLTLNSLLERTFRSSRCLDLESLCIATEQH 134
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW +R+D+++L++ GNL DA+ IAALA+L+ FRRP+ S ED E+ + ERE +PL
Sbjct: 135 VWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPDVSF-IED--EIRTYSERERELMPL 191
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ H P++VT+ + S + ++DPT EE + + N+ ++C + G
Sbjct: 192 LFLHYPVSVTYCVYKSSTQPLVDPTLLEENAADSIIVLSFNSYQELCTLNAGGTAPTNVR 251
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
IMQC A+R + + + I+ A+E
Sbjct: 252 TIMQCAHGAARRSKALVQFIRKALE 276
>gi|194891452|ref|XP_001977495.1| GG18224 [Drosophila erecta]
gi|190649144|gb|EDV46422.1| GG18224 [Drosophila erecta]
Length = 415
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 157/300 (52%), Gaps = 4/300 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F++ A+ R DGR E R + + FG + G+ V +G T ++ VT + P
Sbjct: 16 ERNFVQLAVKQNQRFDGRRSNECRDVELTFGSDWGTVAVSMGDTKVLTRVTCDMGTPATS 75
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG + + +A + ++ L +++R R SR+VD ESLCV A V
Sbjct: 76 RPNEGKFQLNVNLAGVAFLDELQTTHDQRSLTLNSLLERTFRSSRSVDLESLCVAAEHHV 135
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W IR+D+++L++ GNL DA+ IA LA+L+ FRRP+ + D ++ ++ +ER+ +PL+
Sbjct: 136 WCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPDVTFA---DDKLRIYTEKERDFIPLL 192
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
H P++VT+ + S ++DPT EE + + N+ ++C++ G
Sbjct: 193 FLHYPVSVTYCIYKSSWQPIVDPTLLEENAADSVIVLSFNSYQELCSLNAGGTAPTNVRT 252
Query: 255 IMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKLNEPSGH 314
IMQC R A+ + I+ A+ + + ER L+ + + L G+ K N+ G+
Sbjct: 253 IMQCARNAATRCKSLVDFIRKAL-SLDEERRLQGDRLVDGLVALIGNTQHKLSFNKLMGY 311
>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
Length = 260
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 140/262 (53%), Gaps = 22/262 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K ++ + G R DGR ++R + ++ + DGS+ VQ+G T ++ V + P+
Sbjct: 11 KDYVYDLIEKGKRADGRGFLDFRDIIVERDLIKKADGSTRVQIGDTVVLVGVKVEPGAPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN+G L E P+A P FE+G P+E ++EL R+VDRG+R S +D E LC+ G+
Sbjct: 71 PDTPNKGILMTNAELVPLASPEFESGPPNEDSIELARVVDRGIRGSETIDLEKLCIEEGE 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSLGGEDDLEVIVHPPEEREP 190
VW + ID+H LDN GNLVDAA + A+ SLL P L GED L+
Sbjct: 131 KVWMVFIDIHTLDNDGNLVDAAALGAITSLLNVTIPYERYGLTGEDTLQ----------- 179
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
I P+AVT L++DP +EE+ K+T NA+G + +QK G G+
Sbjct: 180 ----IRDTPVAVTVVEIGGN--LLVDPNVYEESAATSKLTVISNADGSISGLQKSGSTGL 233
Query: 251 LQSVIMQCLRLASRMASDITKK 272
+ I++ + + A +I +K
Sbjct: 234 TEEKIVKMIEIGIEKAREIREK 255
>gi|388851534|emb|CCF54724.1| probable RRP45-Exosome complex exonuclease [Ustilago hordei]
Length = 322
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 161/315 (51%), Gaps = 39/315 (12%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ E FI + L IR+DGR+ R + I FG E G+ V + T + V L P
Sbjct: 10 SLTESDFILSCLQDSIRVDGRSFLAPRDIHISFGEELGNCTVSIKGTRVSTSVRANLFPP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFET--GRPSESA----VELGRIVDRGLRESRAVDTES 125
DRP EG L I T+ SPMA +++ G + SA V R++++ +R + AVD E+
Sbjct: 70 RSDRPYEGFLQITTDISPMAGVEYDSTGGGANSSARAKEVLFDRLIEKAIRRTEAVDREA 129
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP 185
LCV+AG+ VW + + +H+L + G +DAA + ++ SL FRRP+ S+ E+ +V ++
Sbjct: 130 LCVVAGEQVWNVHLTVHLLSDTGAALDAAVLCSMLSLRHFRRPDYSI--ENGNQVRLYSS 187
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSES-------------------------------LLV 214
+ER P+PL IHH P+ VTF F+ S + +
Sbjct: 188 DERVPIPLAIHHTPLCVTFAIFNDLSTTTTATAKSQPDDDHLIDPTSASAAASTSSTVAL 247
Query: 215 IDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
+DPT EE + K+T LNA ++C + K G + ++ + + R ++TKK++
Sbjct: 248 LDPTLLEETLAHSKLTLVLNAQKEICVLDKSYGSPIAPQTLLDLINVGFRRIQELTKKLE 307
Query: 275 DAVETYNTERALRKI 289
+A++ R + I
Sbjct: 308 EALKLDAETRVVEVI 322
>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
Length = 265
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 138/235 (58%), Gaps = 11/235 (4%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR EYR +SI+ G + +GS+ V++G T ++ + Q+ P+ D P+ G L
Sbjct: 25 REDGRELDEYRDISIETGVISKAEGSARVKIGDTQVIVGIKPQIGAPFPDTPDLGVLMTN 84
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E PMADP+FE G PSE ++EL R+VDRG+RES VD + LCV GK VW + IDLHI+
Sbjct: 85 CEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLFIDLHII 144
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
DN GNL DA +A +A+L + + P S+ DD V+ H E LP I++ TF
Sbjct: 145 DNCGNLFDACELAVMAALKSTKLPSASIA--DDEVVLDH--ENTIDLP--INNEVAMCTF 198
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ L++DPT +EE V ++ + +G++CA+QK G + + I C+
Sbjct: 199 VKIGDK--LILDPTLNEEKVASARLNVGVTKDGNICAMQKGGILPLTKEDIFYCV 251
>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
Length = 260
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 141/262 (53%), Gaps = 22/262 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K ++ + G R DGR ++R + ++ + +GS+ VQ+G T ++ V + +P+
Sbjct: 11 KDYVYDLIEKGKRADGRGFLDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGEPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN+G L E P+A P FE+G P E+++EL R+VDRG+R S +D E LC+ G+
Sbjct: 71 PDTPNKGILMTNAELVPLASPEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGE 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSLGGEDDLEVIVHPPEEREP 190
VW I ID+H LDN GNLVDAA + A+ SLL P + L GED L+
Sbjct: 131 KVWMIFIDIHTLDNDGNLVDAAALGAIMSLLNVAIPYEQYGLTGEDTLQ----------- 179
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
I P+AVT L++DP +EE+ K+T NA+G + +QK G G+
Sbjct: 180 ----IRDTPVAVT--VVEIRGNLLVDPNVYEESAATSKLTVISNADGSISGLQKSGSNGL 233
Query: 251 LQSVIMQCLRLASRMASDITKK 272
+ I++ + A +I +K
Sbjct: 234 TEEKIVKMTEIGIEKAREIREK 255
>gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
Length = 286
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 148/259 (57%), Gaps = 10/259 (3%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I ++ G RIDGR ++YR L + + GSS V+LG T ++ V +L +P+ DR
Sbjct: 19 IIKSIKRGERIDGRGLYDYRPLEVVLNPIQKASGSSLVRLGGTQVIAGVKLELGEPFPDR 78
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
PNEG L + EF P+A PSFE G P E+++E+ RI+DR LRE +AV ++L V GK+VW
Sbjct: 79 PNEGVLQVHAEFVPLASPSFEPGPPDENSIEIARIIDRSLREPKAVKLDTLVVEPGKVVW 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ D++++D+ GN+ DA+ +A++ +L T R P G E ++ PL I
Sbjct: 139 VVFDDIYLVDHQGNITDASMMASMLALATARIP-----GLVKTETGYRVDNTKQTGPLPI 193
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
+ L + VT G + +V+DP+ EEAV+ +T ++ G +C +QK G +G ++ +
Sbjct: 194 NTLVVTVTMGIYGDT--IVVDPSLEEEAVLDSFLTIAVDEAGRICGVQKRGMKGFSRNTL 251
Query: 256 MQCLRLASRMASDITKKIK 274
+ A D+ + ++
Sbjct: 252 ENAVNTALSKGRDLIELLR 270
>gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
DSM 2375]
gi|222434093|gb|EEE41258.1| 3' exoribonuclease family, domain 1 [Methanobrevibacter smithii DSM
2375]
Length = 265
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 11/235 (4%)
Query: 28 RIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR EYR +SI+ + +GS+ V++G T ++ + Q+ P+ D P+ G L
Sbjct: 25 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAPFPDTPDLGVLMTN 84
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E PMADP+FE G PSE ++EL R+VDRG+RES VD + LCV GK VW + IDLHI+
Sbjct: 85 CEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLFIDLHII 144
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
DN GNL DA +A +A+L + + P S+ DD V+ H E LP I++ TF
Sbjct: 145 DNCGNLFDACELAVMAALKSTKLPSASIA--DDEVVLDH--ENTIDLP--INNEVAMCTF 198
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ L++DPT +EE V ++ + +G++CA+QK G + + I C+
Sbjct: 199 VKIGDK--LILDPTLNEEKVASARLNVGVTKDGNICAMQKGGISPLTKEDIFYCV 251
>gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
smithii ATCC 35061]
gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC
35061]
Length = 262
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 137/235 (58%), Gaps = 11/235 (4%)
Query: 28 RIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR EYR +SI+ + +GS+ V++G T ++ + Q+ P+ D P+ G L
Sbjct: 22 REDGRELDEYRDISIETDVISKAEGSARVKIGDTQVIVGIKPQIGAPFPDTPDLGVLMTN 81
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E PMADP+FE G PSE ++EL R+VDRG+RES VD + LCV GK VW + IDLHI+
Sbjct: 82 CEMLPMADPTFEPGPPSEDSIELARVVDRGIRESELVDLDKLCVEEGKHVWMLFIDLHII 141
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
DN GNL DA +A +A+L + + P S+ DD V+ H E LP I++ TF
Sbjct: 142 DNCGNLFDACELAVMAALKSTKLPSASIA--DDEVVLDH--ENTIDLP--INNEVAMCTF 195
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ L++DPT +EE V ++ + +G++CA+QK G + + I C+
Sbjct: 196 VKIGDK--LILDPTLNEEKVASARLNVGVTKDGNICAMQKGGISPLTKEDIFYCV 248
>gi|126465759|ref|YP_001040868.1| exosome complex RNA-binding protein Rrp42 [Staphylothermus marinus
F1]
gi|126014582|gb|ABN69960.1| ribosomal RNA-processing protein RRP42 [Staphylothermus marinus F1]
Length = 285
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 153/267 (57%), Gaps = 9/267 (3%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I+ L G RIDGR EYR + + + +GS+ V+LG T ++ V ++ PY DR
Sbjct: 19 IKKLLKQGERIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR 78
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
PNEG L + EF P+A P+FE G P E+A+E R++DR LRE RA+ E L V+ GK VW
Sbjct: 79 PNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRSLREPRAIRLEDLVVIPGKKVW 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
I DL+++D+ GN+VD ++ + +L + P + ED+ V++ + PLPL +
Sbjct: 139 LIFNDLYLIDHYGNIVDTGMLSTMLALNMTKIPRI-VSIEDE-NVVIDKTVKEAPLPLNL 196
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
+ + VT G + ++++DP EE V+ ++T ++ + IQK G +G+ +I
Sbjct: 197 NV--VTVTLGII--DDVIIVDPNIEEELVVDSRITFAVDETNRIVGIQKMGMKGIKPKMI 252
Query: 256 MQCLRLASRMASDITKKIKDAVETYNT 282
Q + +A + AS++ +++ + +T
Sbjct: 253 DQLVDIALKKASELHSLLREVLNNPDT 279
>gi|410721457|ref|ZP_11360792.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
gi|410598914|gb|EKQ53477.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
Length = 266
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 154/264 (58%), Gaps = 11/264 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
K + + +G R DGR +YR++S++ G + +GS+ V++G+T I+ Q+ +P+
Sbjct: 11 KESVANLIKNGERADGRALDQYREISLETGVIKKAEGSARVKIGKTQIVVGAKPQIGEPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G L +E PMA P+FE G P+E++VEL R+ DR +RE + VD E L ++ GK
Sbjct: 71 PDTPNVGVLITNSELLPMAAPNFEAGPPNETSVELSRVTDRCIREGKTVDLEKLVIIPGK 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW I +DLHI+D GNL+DAA + +LA+L+ + P ++ G+ EV++ + +P
Sbjct: 131 KVWMIFLDLHIVDYDGNLMDAAVLGSLAALMNTKIPSTTIEGD---EVVI---DYGTMVP 184
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ I P+ T E LV DP+ E+ V+ +++ + +G +CA+QK G + +
Sbjct: 185 IPIKEQPLMCTMAKIGGE--LVADPSLEEDDVLDARISIGMRVDGSICAMQKGGSVPLTR 242
Query: 253 SVIMQCLRLASRMASDITKKIKDA 276
I++ + +A + ++ + I A
Sbjct: 243 EEILKAVEMAQKKTKELRENIPKA 266
>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
Length = 259
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 138/236 (58%), Gaps = 20/236 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + S G R DGR E+R ++IK G+ +GSS+V +G + ++ V Q +P
Sbjct: 10 KKDYIYSLASQGDRADGRKFDEFRPVTIKVGVIGKAEGSSDVMIGDSRVVVGVKIQPGEP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P++G + E P+A P+FETG P E A+EL R+VDRG+RES A+D LC+ +G
Sbjct: 70 FMDTPDKGVIITNLELVPLASPTFETGPPREDAIELARVVDRGVRESEAIDLSKLCIESG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+H+LD+ GNL+DAA++ A+A+L++ + P G GED
Sbjct: 130 QKVWMVFIDVHVLDHDGNLMDAASMGAIAALMSAKIPNAKFGLGED------------AK 177
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
LPL +P+ VT S +++DP+ EE V K+T N G + +QK G
Sbjct: 178 LPL--EDVPVGVTAVKIGSS--IILDPSLDEENVASCKLTVITNKEGALAGMQKSG 229
>gi|354547981|emb|CCE44716.1| hypothetical protein CPAR2_405200 [Candida parapsilosis]
Length = 330
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 164/320 (51%), Gaps = 39/320 (12%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRID--GRNPF-EYRKLSIKFG-REDGSSEVQLGQTHI 60
++ T +T N++ F+ AL + +R++ PF +R +SI E G EV G T +
Sbjct: 1 MSRTAEITTNQRNFLHYALQNNLRLNPPTNRPFLAHRPISIYLSPTEYGYVEVSWGATKL 60
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR 119
VT Q+V+PY DRP EG +I +E SP A F+T R + V + RI+++ +R S
Sbjct: 61 SVRVTAQIVKPYPDRPFEGIFTINSEVSPQASLKFDTTRQQQQDEVLVSRILEKAIRRSN 120
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
AVD ESLC++AG VW + +DL+ + GNL+D A + +LL FR+P+ S+ G D
Sbjct: 121 AVDLESLCIVAGDKVWELCVDLNFWNYDGNLIDVGCFATMLALLHFRKPDISIHG-DGGA 179
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSES---------------------------- 211
V VH ER+P+ L I H+PI +TF F++ S
Sbjct: 180 VTVHDVNERQPVSLSILHVPICLTFSFYNLSSQEMNIKGGGATGGAIEDGSGTYHDDLEN 239
Query: 212 ---LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV-LQSVIMQCLRLASRMAS 267
+ + D EE++ G +T TLN N ++ + K GG + Q ++ C + ++
Sbjct: 240 QDEICLFDADALEESLRQGSLTITLNKNREIIQLSKNGGVPIDAQQLLGLCFE-SVKIVD 298
Query: 268 DITKKIKDAVETYNTERALR 287
++T+ IK ++ + R R
Sbjct: 299 ELTELIKTEIKQHEEMRYKR 318
>gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
Length = 289
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 144/243 (59%), Gaps = 9/243 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RIDGR +YR +++ + DGSS V LG T ++ V +L +P+ DRP+EG
Sbjct: 23 LKKGERIDGRGLLDYRPINVYLNPIEKADGSSHVILGTTQVITGVKIELGEPFADRPDEG 82
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + EF P+A +FE G P E+++E+ R+VDR LRE +A+D + L V GK VW +
Sbjct: 83 VLQVHAEFVPLASQTFEPGPPDENSIEVARVVDRSLREPKAIDFKQLVVAPGKKVWVVFN 142
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D++++D+GGN++DA+ ++++ +L T + P E + V+ +R PL ++ L
Sbjct: 143 DIYLIDHGGNIMDASMLSSMLALATAKIPYYE-EKEPGVYVV---DNKRHTSPLPVNTLV 198
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
VT G E ++++DP+ EE V+ +T ++ G VC IQK G G+ + ++ Q +
Sbjct: 199 ATVTMGI--HEDVIIVDPSIEEEVVLNTFLTIAVDEKGRVCGIQKKGIAGLSKKMLDQAV 256
Query: 260 RLA 262
+A
Sbjct: 257 EIA 259
>gi|145476653|ref|XP_001424349.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391413|emb|CAK56951.1| unnamed protein product [Paramecium tetraurelia]
Length = 299
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 151/263 (57%), Gaps = 9/263 (3%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG-REDGSSEVQLGQTHIMGFVTGQLVQPYRDRP 76
F+ L+ G RIDGR+P + R + FG + G+ E+ LG+T + + + P RP
Sbjct: 5 FVLEQLALGKRIDGRDPLQQRMIQCHFGPQSTGAVELSLGETRVFATTSASITTPNPIRP 64
Query: 77 NEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWA 136
+EG L + + D + P + +E+ + +++ ++ S+A+DTESLC+L+GK VW+
Sbjct: 65 SEGFLKFHLDLQVLRDTGY-MHNPIKLGMEIEKYIEKVIKGSKALDTESLCILSGKNVWS 123
Query: 137 IRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIH 196
I +++ +++N GNL+DA + + SL FRRP+ S+ + V E+ +PL IH
Sbjct: 124 IDVNVALINNDGNLLDAMYLCCIFSLQHFRRPQVSVSLQG-----VKVEVEKRLVPLSIH 178
Query: 197 HLPIAVTFGF--FSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
H+P+++T+ + +++L+ DP EEAV G++T ++N D+C + KPGG + S+
Sbjct: 179 HIPLSLTYAILELNEQTILLQDPCLEEEAVQNGRITYSVNIYNDICHVHKPGGSPINISI 238
Query: 255 IMQCLRLASRMASDITKKIKDAV 277
+ Q + + T++I+ +
Sbjct: 239 LQQLTTVTLMKSKPYTEEIRSLL 261
>gi|440298206|gb|ELP90846.1| exosome complex exonuclease RRP45, putative [Entamoeba invadens
IP1]
Length = 263
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 149/261 (57%), Gaps = 9/261 (3%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKF-GREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
IE+ + +RIDGR+ E+R +KF RE GS ++ +G + G + V P R +
Sbjct: 4 IESLIKKNLRIDGRHLDEFR--DVKFLCREPGSVDLHIGDSRAFGETLIEAVTPIGTR-D 60
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAI 137
G + F MA+P F + +E+GR+V+R L +RA+D + L ++ GKLVW+I
Sbjct: 61 SGIFHVNVNFLQMANPDFLDAKGPRDLIEIGRVVERALLSTRAIDIDGLVLVRGKLVWSI 120
Query: 138 RIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHH 197
+ ++I+++ GNL+D + A++SLLT + E + G D V + EER+P PL IHH
Sbjct: 121 TVCVNIINDSGNLMDLVAMTAISSLLTALKREVEICGTD---VKILTVEERKPKPLSIHH 177
Query: 198 LPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQ 257
+PI ++FG + E + ++DP+ EE + ++T +N G+VCA+QK G + +VI
Sbjct: 178 IPITISFG-ITDEGIPLMDPSDREETICKSRLTIAINKEGEVCAVQK-SGTPIAMTVIQN 235
Query: 258 CLRLASRMASDITKKIKDAVE 278
C +A A + I + V+
Sbjct: 236 CCDIALDKAQSVIAFITEQVD 256
>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
Length = 259
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 145/259 (55%), Gaps = 18/259 (6%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
+ ++ + + G RIDGR E RK+ I+ G + +GS+ V+LG T ++ V Q +P+
Sbjct: 11 RDYVLSKIRDGERIDGRKFDEIRKIEIQTGVIEKAEGSALVKLGNTQVLVGVKMQPGEPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN+G + E P+A P+FE G P E+A+EL R+VDRG+RES AVD E LC+ G+
Sbjct: 71 PDAPNKGIIITNAELVPLASPTFEPGPPDENAIELARVVDRGIRESEAVDLEKLCIEEGE 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW I ID+ LD+ GNL+DA+ + A+A+LL P DD PLP
Sbjct: 131 KVWLIFIDIWALDDDGNLLDASALGAIAALLNTTVPAERFEVGDDF-----------PLP 179
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ LP+A+T E+ +++DP E +V +T T ++ ++ AIQK G + +
Sbjct: 180 --VRDLPVAIT--SLIVENKILVDPIKDETSVAKNFLTITTDSEDNIVAIQKSGSYLLPE 235
Query: 253 SVIMQCLRLASRMASDITK 271
+ + L+ R A ++ K
Sbjct: 236 EKFYEAIELSIRKAREVRK 254
>gi|408382268|ref|ZP_11179813.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
gi|407814924|gb|EKF85546.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
Length = 266
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 146/244 (59%), Gaps = 11/244 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+ +G R DGR +YR+++I+ G + +GS+ V++G T I+ Q+ +P+ D PN G
Sbjct: 18 IKNGERADGRALDQYREVTIETGVIKKAEGSARVKIGNTQIIVGAKPQIGEPFPDTPNVG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L +E PMA P+FE G P+E++VEL R+ DR +RE + VD E L ++ GK VW I +
Sbjct: 78 VLITNSELVPMAAPNFEAGPPNETSVELSRVTDRCVREGKVVDLEKLVIIPGKKVWMIFL 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
DLH++D GNL+DAA + ++A+L+ + P ++ EDD VI + E P+P I P
Sbjct: 138 DLHVIDYDGNLMDAAVLGSVAALMNTKIPSTTI--EDDEVVIDY--ETMVPIP--IAEQP 191
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ T E LV DP+ E+ V+ +++ + +G +CA+QK G + + I++ +
Sbjct: 192 LMCTLAKIGGE--LVADPSLEEDDVLDARISIGVRVDGSICAMQKGGSVPLTREEILKAV 249
Query: 260 RLAS 263
++A
Sbjct: 250 KIAQ 253
>gi|294948902|ref|XP_002785952.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239900060|gb|EER17748.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 29/306 (9%)
Query: 11 LTVNEKRFIETAL----------SSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
LT++++ F +A+ + G+R DGR + R++ ++ G G E ++G T +
Sbjct: 3 LTLSDEAFAYSAIFPEASEKSTSTVGLRADGRTLLDCRRMKLRLGPALGQCECRIGSTWV 62
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMAD----PSFET-GRPSES----AVELGRIV 111
VTG+++ P +RPNEG L + ++ + PS ++ G P + AV L +
Sbjct: 63 RAVVTGEVITPPPERPNEGKLFVSVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQL 122
Query: 112 DRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171
+R L+ S+AVD E+LC+ G VW++R+D+H+ + GN+ DAA A++A+L+ +RR E +
Sbjct: 123 ERMLKGSKAVDVEALCIAGGSRVWSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVT 182
Query: 172 LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS----ESLLVIDPTHHEEAVMVG 227
+E EE EP+PL IHH+P+ +TF S S ++ DPT EE + G
Sbjct: 183 -----TMEGSTVVREELEPMPLSIHHMPLPLTFTLVKSPDGTTSAVLADPTSLEERLSGG 237
Query: 228 K-MTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
+ +N G++C++ KPGG ++ C+ A+ A ++ K I DA+E +R
Sbjct: 238 ALLVVVVNQYGELCSLLKPGGTSCPLPTVINCIHAAAGRAKEVHKMIADALEKDTAQRGE 297
Query: 287 RKIKRH 292
RK H
Sbjct: 298 RKKDIH 303
>gi|156032965|ref|XP_001585319.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980]
gi|154698961|gb|EDN98699.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 209
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 118/186 (63%), Gaps = 5/186 (2%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MA P+FET RP+E V L R++++ LR S A+DTESLC++AG+ W++R D+HIL + GN
Sbjct: 1 MASPAFETNRPTEQEVLLSRLLEKTLRRSAALDTESLCLIAGQKCWSVRADVHILSHDGN 60
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
L+DA+ IA +A+L F++P+ S GE V V+ EREP+PL + H P+ VTF F+
Sbjct: 61 LIDASCIAIIAALQHFKKPDTSTEGET---VTVYTLAEREPVPLSLLHFPLCVTFSFYGK 117
Query: 210 --ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
E + ++D T EE + G T ++N +G+VC I K GG V ++QC +A
Sbjct: 118 GEEQVRLLDTTLLEEQLREGSCTISMNRHGEVCQIAKLGGIAVDALELLQCTNMALEKVK 177
Query: 268 DITKKI 273
DI+ I
Sbjct: 178 DISAYI 183
>gi|195567204|ref|XP_002107160.1| GD15722 [Drosophila simulans]
gi|194204561|gb|EDX18137.1| GD15722 [Drosophila simulans]
Length = 407
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 145/265 (54%), Gaps = 7/265 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E+ F++ A+ R+DGR E R + + FG + GS V +G T +M V ++ P
Sbjct: 16 ERSFVQLAVKQNQRLDGRRSNESRDVELTFGTDWGSVAVSMGDTKVMAQVICEMGLPSLS 75
Query: 75 RPNEGTLSIFTEFSPMA--DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
RPNEG L + +A D ++ T + +++L +++R R S+ +D ESLCV A K
Sbjct: 76 RPNEGKLQLNVLLGGVAFLDEAYSTH--DQRSLKLNSLLERTFRSSKCIDLESLCVAAEK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW IR++++++++ GNL DA++IA LA+L+ FRRP+ S D E+ + E P
Sbjct: 134 HVWCIRVNVNVINHDGNLYDASSIATLAALMHFRRPDVSY---KDGELRIFKQNGLEFTP 190
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L+ HH P++VT+ + S ++DPT EE + + N+ ++C++ G
Sbjct: 191 LLFHHYPVSVTYCVYKSSGQPILDPTLLEENAADSVIVLSFNSYQELCSLTAGGTAPTNA 250
Query: 253 SVIMQCLRLASRMASDITKKIKDAV 277
++MQC R A+ + ++ A+
Sbjct: 251 PIVMQCARNAAARCKSLLDFVRKAL 275
>gi|194766922|ref|XP_001965573.1| GF22565 [Drosophila ananassae]
gi|190619564|gb|EDV35088.1| GF22565 [Drosophila ananassae]
Length = 412
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 142/263 (53%), Gaps = 3/263 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
EK F++ A+ R+DGR E R + + FG + G+ V LG+T ++ V+ + P
Sbjct: 16 EKNFVQQAVKQNHRLDGRRSNECRDVQLTFGADWGTVAVTLGETKVLAQVSSDIGVPTTA 75
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
R NEG L + +A + + L +++R R SR +D ESLCV A + V
Sbjct: 76 RANEGKLQLNVNIGGVAFLDEAQSTHDQRFLTLNSLLERTFRSSRCLDLESLCVAAEQHV 135
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W +R+D+++L++ GNL DA+ IA LA+L+ +RRP+ + ED+L ++ +ERE PL+
Sbjct: 136 WCVRVDINVLNHDGNLYDASTIATLAALMHYRRPDVTF-AEDELR--IYTEKEREFQPLL 192
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
H P++VT+ + S S ++DP+ EE + + N+ ++C + G
Sbjct: 193 FLHYPVSVTYCIYKSSSQPIVDPSLLEENAADSVIVLSFNSYKELCTLNAGGSAPTNVRT 252
Query: 255 IMQCLRLASRMASDITKKIKDAV 277
IMQC R A+ + + I+ A+
Sbjct: 253 IMQCARNAATRSKALVDFIRKAL 275
>gi|294952965|ref|XP_002787536.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239902542|gb|EER19332.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 29/306 (9%)
Query: 11 LTVNEKRFIETAL----------SSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
LT++++ F +A+ + G+R DGR + R++ ++ G G E ++G T +
Sbjct: 3 LTLSDEAFAYSAIFPEASEKSTSTVGLRADGRTLLDCRRMKLRLGPALGQCECRVGSTWV 62
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMAD----PSFET-GRPSES----AVELGRIV 111
VTG+++ P +RPNEG L + ++ + PS ++ G P + AV L +
Sbjct: 63 RAVVTGEVITPPPERPNEGKLFVSVDYGAVVSSATLPSGDSAGLPGTAQTPEAVSLCNQL 122
Query: 112 DRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171
+R L+ S+AVD E+LC+ G VW++R+D+H+ + GN+ DAA A++A+L+ +RR E +
Sbjct: 123 ERMLKGSKAVDVEALCIAGGSRVWSVRLDVHVFTDAGNVGDAAATASVAALMHYRRSEVT 182
Query: 172 LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS----ESLLVIDPTHHEEAVMVG 227
+E EE EP+PL IHH+P+ +TF S S ++ DPT EE + G
Sbjct: 183 -----TMEGSTVVREELEPMPLSIHHMPLPLTFTLVKSPDGTTSAVLADPTSLEERLSGG 237
Query: 228 K-MTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
+ +N G++C++ KPGG ++ C+ A+ A ++ K I DA+E +R
Sbjct: 238 ALLVVVVNQYGELCSLLKPGGTSCPLPTVINCIHAAAGRAKEVHKMIADALEKDTAQRGE 297
Query: 287 RKIKRH 292
RK H
Sbjct: 298 RKKDIH 303
>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
PT]
gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
PT]
Length = 257
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 147/260 (56%), Gaps = 18/260 (6%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K ++ L G R DGR+ +YR + I+ + +GS+ V+LG+T +M + Q +P+
Sbjct: 10 KDYLYNLLLRGERADGRSFTQYRPIEIERNIIKKAEGSALVKLGKTQVMVGIKIQPGEPF 69
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G + E P+A P FE G P+E +EL R+VDRG+RES +VD ++LC++ G+
Sbjct: 70 PDAPNRGVIVTNAELVPLASPIFEPGPPNEYGIELARVVDRGVRESGSVDLDALCIVPGE 129
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW I ID+HILD+ GN++DA+++ A+A+LL P G +D + LP
Sbjct: 130 KVWIIFIDIHILDDCGNIMDASSLGAIAALLGATVPASRFGLGEDFQ-----------LP 178
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ +PIA T F +++ DP EEA+ K+T A+G +C +QK G + +
Sbjct: 179 --VRDIPIATTAVEFG--DVVLFDPDVDEEAIADAKLTVITKADGTICGMQKSGPGMLSE 234
Query: 253 SVIMQCLRLASRMASDITKK 272
+ + + +A A +I +K
Sbjct: 235 DQVYRIVDIACDNAREIREK 254
>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
Length = 260
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 145/249 (58%), Gaps = 20/249 (8%)
Query: 28 RIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R D R E R +SI+ G +GS++V G T ++ V Q+ +P+ D P++G +
Sbjct: 23 REDNRAFDEIRDISIETDIIGNAEGSAKVYWGDTQLIVGVKLQVGEPFPDTPDKGIIITS 82
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E +P+A P FE G P E A+E+ R+VDRG+RES A+D LC+ G+ VW + ID+++L
Sbjct: 83 LELNPIASPDFEAGPPKEDAIEIARVVDRGIRESGAIDLNKLCITEGEEVWTVFIDVNVL 142
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREPLPLIIHHLPIAVT 203
++ GN++DAA+I A+A+L+T P S G GED + + + +P+ ++
Sbjct: 143 NDDGNIMDAASIGAIAALMTTNIPAESEGYGED--------------MMMPVRDIPVGIS 188
Query: 204 FGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLAS 263
S E L++DPT++EE+V K+T N +G + A+QK G + + ++Q +A
Sbjct: 189 LVDISGE--LMVDPTYNEESVCDTKITVVSNQDGSISAMQKSGTGSLTEEKVLQAANIAR 246
Query: 264 RMASDITKK 272
AS+I +K
Sbjct: 247 TRASEIREK 255
>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius DSM 639]
gi|449066636|ref|YP_007433718.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449068910|ref|YP_007435991.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035144|gb|AGE70570.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449037418|gb|AGE72843.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
Length = 276
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 137/233 (58%), Gaps = 10/233 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I +AL G+R+DGR P EYR+L + G + +GS+ V+LG T ++ V + P
Sbjct: 15 KKDMILSALERGVRLDGRKPNEYRQLKVTLGYAKKAEGSALVKLGNTLVLAGVKLEEDSP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+++EL RIVDR LR+S+A+D L + G
Sbjct: 75 YPDTPNQGNLIVNVELLPLAYETFEPGPPDENSIELARIVDRSLRDSKAIDLSKLVIAPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GN++DA +A++A++ + P+ + G++ I EER +
Sbjct: 135 KKVWTLWVDVYVLDYDGNILDACMLASIAAIYDTKLPKVEVEGDE----IKINKEERLSI 190
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
PL+ + P+ VT +V+DP EE++ K++ + G + +QK
Sbjct: 191 PLV--NYPV-VTVTTAKIGKYVVVDPNLDEESIADAKLSISYTKEGTIVGLQK 240
>gi|435852007|ref|YP_007313593.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
gi|433662637|gb|AGB50063.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
Length = 260
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 150/263 (57%), Gaps = 22/263 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + G R DGR E+RK++++ + +GS++V +G T ++ V Q+ P
Sbjct: 10 KKDYIYNLMLKGKREDGRAFDEHRKITVQTNVIEKAEGSAKVCIGDTQVLVGVKLQVGAP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P+EG + E +P+A P FE G P E A+E+ R+ DRG+RES A+D + LC+ G
Sbjct: 70 FPDSPDEGVIITNLEMNPLASPDFEAGPPREGAIEMARVTDRGIRESGAIDLKELCITEG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+H+L++ GNL DA+ + A+A+L+T + P G GED V P
Sbjct: 130 EEVWIVFIDVHVLNDDGNLQDASCLGAIAALMTSKIPSEREGKGED-----VKMP----- 179
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
I +PI VT E L++DP EE V K+T N NG + A+QK GEG+
Sbjct: 180 ----IRDIPIGVTLVDIGGE--LMVDPGLAEETVADSKLTIASNKNGSISAMQKT-GEGM 232
Query: 251 L-QSVIMQCLRLASRMASDITKK 272
L Q +++ + +A A +I +K
Sbjct: 233 LTQEQLLKAVDMACAKAEEIREK 255
>gi|399218325|emb|CCF75212.1| unnamed protein product [Babesia microti strain RI]
Length = 278
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 146/257 (56%), Gaps = 5/257 (1%)
Query: 22 ALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTL 81
AL + IR+DGR+ EYR + I F G S V G T ++ V G+++ P RP EG
Sbjct: 13 ALKTQIRLDGRSGLEYRDIKITFPGLIGQSLVSFGSTIVLCTVNGEVIPPVDSRPTEGFY 72
Query: 82 SIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDL 141
E + FE G+P+E + + ++ LR+S ++TESLC+++GK VW+IR+D+
Sbjct: 73 HFHVEIGSLTTVGFEPGKPTEQEMFICSTIEHLLRDSGTIETESLCIVSGKYVWSIRVDM 132
Query: 142 HILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIA 201
+L++ GN +DA ++A+AS + F+R + + GE +E++ + P L IHH+PI
Sbjct: 133 LVLEDAGNALDACALSAVASTMHFKRQQVKIDGE-KIELL--SLDHFTPGELFIHHIPIF 189
Query: 202 VTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRL 261
VTF + ++IDP+ EE + ++ +N +C IQK GG+ + + + L++
Sbjct: 190 VTFAIV--DDFIMIDPSTMEEMLADTLISVAVNQFEQICKIQKIGGKEISLEQLDRVLQV 247
Query: 262 ASRMASDITKKIKDAVE 278
+ + + + +K ++E
Sbjct: 248 SKQQFNHVYGVLKKSME 264
>gi|344234677|gb|EGV66545.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
Length = 301
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 154/280 (55%), Gaps = 17/280 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+++NE ++I +L G R+DGR E RK + G ++G E+ GQT ++ + ++V+
Sbjct: 6 ISINETKYIIESLKQGTRLDGRKLDEIRKPEVVLG-DNGYVELGWGQTKVVIKTSSEIVK 64
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ DRPNEG L I E SPMA F+ E V + RI+++ +R+S A+D E LC+
Sbjct: 65 PFEDRPNEGLLVINNELSPMASIKFDERSVDE--VMINRIIEKSIRKSNALDLEGLCIKT 122
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DL I++ GNL+D+ ++ SL+ F+ P SL +++ V+ +E+ P
Sbjct: 123 GEKVWLIRVDLSIINFDGNLIDSCCFGSIISLIHFKLPNYSLDTNGNIK--VYNLDEKPP 180
Query: 191 LPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
+ L + H+PI ++ FF ++ + V D T EE V + ++N+N +
Sbjct: 181 ISLSVLHIPITLSISFFNPLNDEENLKSNNNYEISVFDATMKEELVRDSYLVVSVNSNKE 240
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
+ + K GG + ++ + A ++T+ IK V+
Sbjct: 241 LIQLTKLGGIPIDSVELVNLCQRCYAYAEELTELIKTTVK 280
>gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum
DSM 1728]
gi|29336948|sp|Q9HIP1.2|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2
Length = 260
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 149/263 (56%), Gaps = 23/263 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K +I + + G RIDGR P E+R+L+I R +GS+ V LG T ++ V + +P+
Sbjct: 14 KNYILSTMKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPF 73
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G L+ E P+A PSFE G P++ A+E+ R+VDRG+RES+ + E L + GK
Sbjct: 74 PDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW + +D+++LD GNL+DA+ IAA+A+L P GGED
Sbjct: 134 KVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGED--------------FK 179
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L + PI+VT LV DP+ E+ + G++T T +G + A+QK G +
Sbjct: 180 LPVSSTPISVT--MVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK----GEIG 233
Query: 253 SVIMQCLRLASRMASDITKKIKD 275
+ ++ ++ A +M+ ++ KK+++
Sbjct: 234 AFTVEDVKKAVKMSLEVGKKLRE 256
>gi|71004918|ref|XP_757125.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
gi|46096381|gb|EAK81614.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
Length = 327
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 162/318 (50%), Gaps = 44/318 (13%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
E F+ + LS G+R DGR+ R + I FG E G+ V + T + V L+ P
Sbjct: 12 TESDFVVSCLSDGVRPDGRSFLSTRDVDISFGEELGNCTVAIKGTRVSTCVRATLMPPRS 71
Query: 74 DRPNEGTLSIFTEFSPMADPSFET--GRPSESA----VELGRIVDRGLRESRAVDTESLC 127
DRP EG L I T+ SPMA +++ G + SA V R++D+ +R + AVD E+LC
Sbjct: 72 DRPYEGFLQITTDISPMAGIEYDSTGGGANSSARAREVLFDRLIDKAVRRTEAVDREALC 131
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
V+AG+ VW + + +H+L + G +DAA + ++ SL FRRP+ S+ E+ +V ++ +E
Sbjct: 132 VVAGEQVWNVHLTVHLLSDTGAALDAAVLCSMLSLRHFRRPDYSI--ENGNQVRLYSLDE 189
Query: 188 REPLPLIIHHLPIAVTFGFFS-----------------SESLLV---------------- 214
R P+PL IHH P+ VTF F+ ++S L+
Sbjct: 190 RVPVPLAIHHTPLCVTFAIFNHLPSISTAASKTQPEDRADSHLIDPNAKASSPDTSTSTS 249
Query: 215 ---IDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITK 271
+DPT EE++ K+T LNA ++C + K G + +++ +++ +T+
Sbjct: 250 VALLDPTLLEESLAQSKLTLVLNAQREICVLDKSYGSPIDAHLLLHLIQIGLIRIQQLTE 309
Query: 272 KIKDAVETYNTERALRKI 289
+++ A+ R + I
Sbjct: 310 RLEHALSVDAETRVVEVI 327
>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336572|sp|O26778.1|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 271
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 12/227 (5%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
RIDGR+ E+R +SI+ G + +GSS V+LG T I+ V Q+ +P+ D P G +
Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+E PMA P+FE G P E +VEL R+VDR +RESR +D E LC++ G VW + +DLHI+
Sbjct: 85 SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHII 144
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GNL DAA +A +A+LL R P + +D EV+++ E+ +PLP ++ + TF
Sbjct: 145 DYDGNLFDAAVLATVAALLDTRIPAAEV---EDGEVVIN-REKMQPLP--VNRKALMCTF 198
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
+E +V+DP+ EE ++ +++ + G +CA+QK GGEG L
Sbjct: 199 AKIGNE--IVLDPSLEEEDILTARISIGVTEEGSICAMQK-GGEGPL 242
>gi|164660754|ref|XP_001731500.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
gi|159105400|gb|EDP44286.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
Length = 330
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 160/320 (50%), Gaps = 61/320 (19%)
Query: 12 TVNEKRFIETAL-SSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
++ E F+E+AL ++ +R DGR F+ R + + F G +VQLG T + V L +
Sbjct: 10 SITEHDFVESALRTTALRPDGRRFFQSRPVQVNFSERLGWCQVQLGDTIAVASVEAALSE 69
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETG------RPSESAVELGRIVDRGLRESRAVDTE 124
P RDRP EG + I + SPMA +++G E A R+++R +R + AVD E
Sbjct: 70 PRRDRPYEGLVQIHADISPMAGVEYDSGGMFGASESRERAALFERLLERAVRNTEAVDRE 129
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
+LCV+AGK+VW + + +H+L + G VDAA +A++ +L +RRPE ++ ++ V VH
Sbjct: 130 ALCVIAGKVVWCVSLTVHLLADQGASVDAAVLASMLALRQYRRPEVTV---ENGVVTVHS 186
Query: 185 PEEREPLPLIIHHLPIAVTFGFF-------------SSESLLV----------------- 214
+ER P+PL HH+P+ V++ F ++SL V
Sbjct: 187 SDERVPVPLACHHVPLCVSYAVFLLEPKTEQEHALLQAQSLAVTARQQQQLAMQVDDAPA 246
Query: 215 ---------IDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL------ 259
+DP+ E+ + +T +NA ++C + K GG + I+ L
Sbjct: 247 NAIAVPVTLLDPSLLEKTLAHSTITFVMNAQREICVLDKAGGASLPFQTILALLDSAAAR 306
Query: 260 ------RLASRMASDITKKI 273
L S++A D ++++
Sbjct: 307 VQELSTLLESKLAEDASQRV 326
>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
Length = 276
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 135/231 (58%), Gaps = 10/231 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I +L GIR DGR EYR LSI + DGS+ V+LG T ++ V + +P+ D
Sbjct: 19 ILASLDRGIRADGRKFNEYRPLSITLSYAKKADGSALVKLGDTTVLAGVKVEPEEPFEDT 78
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+++D L + GK +W
Sbjct: 79 PNQGNLVVNVELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKSIDLSKLVIEPGKKIW 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ +D+++LD GGN++DA +AA+++L R P+ G D++++I E+ E LP+
Sbjct: 139 TVWVDIYVLDYGGNILDACTLAAVSALYDTRLPKVVKEG-DEIKIIKE--EKGEKLPM-- 193
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ P+ VT LV+DP EE +M K++ + G + IQK G
Sbjct: 194 -NFPV-VTVSVAKIGKHLVVDPDLDEEGIMDAKISLSYTPEGRIVGIQKTG 242
>gi|406701815|gb|EKD04926.1| exosome complex exonuclease rrp45 [Trichosporon asahii var. asahii
CBS 8904]
Length = 490
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 152/281 (54%), Gaps = 23/281 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTH--IMGFVTGQLVQPY 72
++ F+ AL G R+DGR P E R + FG E GS E ++G+T G +
Sbjct: 11 QREFLVQALERGKRLDGRLPLEQRPFELSFGAELGSVECRMGKTARATTGHMRASCSSRA 70
Query: 73 RDRPNEGTLSIFTE---FSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
R P S F+ +AD S SE V + R++++ +R + AVD E+LC++
Sbjct: 71 RSVPWPAAPSRLDGEFGFAHIADAS-----ASEDEVMITRLLEKSIRRTEAVDREALCIV 125
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
AG+ V + GNL+D A+IAA+ +L FR+PE + G+ EVIVH P+ER
Sbjct: 126 AGEKVSS-------RGEAGNLLDCASIAAMTALKHFRKPEVEVHGD---EVIVHSPDERA 175
Query: 190 PLPLIIHHLPIAVTFGFFSSESLL-VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
PLPL IHH P+ +TF +F E L ++DPTH EE + G MT TLNA ++C + K GG
Sbjct: 176 PLPLAIHHNPLCLTFAYF--EDLQPILDPTHLEETLASGTMTVTLNAQRELCVLSKAGGS 233
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKI 289
+ +M +R+ + K+I+DA+ +R + ++
Sbjct: 234 ALSVDDVMAVVRVGVERVRESVKQIEDALVKDAAQRVVERL 274
>gi|389852856|ref|YP_006355090.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. ST04]
gi|388250162|gb|AFK23015.1| putative exosome complex RNA-binding protein Rrp42 [Pyrococcus sp.
ST04]
Length = 266
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 152/259 (58%), Gaps = 10/259 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR + I+ G + +GS+ V+LG T ++ + L +P+ D PN G
Sbjct: 9 LKEGKRIDDRGFEDYRPIEIEVGLIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMG 68
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RESRA++ E + ++ GK+V + I
Sbjct: 69 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIVPGKIVRVVFI 128
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+H+LD+ GNL+DA IAA+A+L+ R P+ ++ V EE+EPLP + +P
Sbjct: 129 DVHVLDHDGNLMDAIGIAAIAALMNARVPKVRY---NEETEEVEILEEKEPLP--VEKIP 183
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ VTF + LV+DP+ EE VM G++T T + G + A+QK G +M +
Sbjct: 184 VPVTFAKIGNT--LVVDPSLEEEQVMDGRLTITTDETGHISAVQKSEGGAFKLEEVMYAV 241
Query: 260 RLASRMASDITKKIKDAVE 278
A + A I I +AVE
Sbjct: 242 ETAFKKAEYIRNLIVEAVE 260
>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
acetivorans C2A]
gi|29336812|sp|Q8TGX5.1|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
Length = 266
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 148/259 (57%), Gaps = 20/259 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + G R DGR ++R L ++ + +GS++V LG T ++ V Q P
Sbjct: 12 KKDYIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP 71
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D +EG + E +P+A P FE G P E A+E+ R+VDRG+RES A+D + LC+ G
Sbjct: 72 FPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVG 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+H+L++ GN++DA+ +AA+A+L+T P G GED
Sbjct: 132 ESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGED-------------- 177
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL + +P+ +T S+ L++DP+ EEAV K+T +++G V +QK G +
Sbjct: 178 VPLAMKEMPVGITIAKIGSK--LMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGISPL 235
Query: 251 LQSVIMQCLRLASRMASDI 269
++ + + + LA A+++
Sbjct: 236 TEAELFEAIDLALEKAAEL 254
>gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
Length = 270
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 148/264 (56%), Gaps = 18/264 (6%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L G RIDGR E RKL+I+ + +GS+ V LG+T + VTG VQP R
Sbjct: 15 IAALLERGERIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDV---VTGVKVQPDRPF 71
Query: 76 PNEGTLSIF---TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
P+ G IF E P+A P ETG PS + +EL R+VDRG+RES VD L +L K
Sbjct: 72 PDVGDRGIFICTAEILPLAHPDVETGPPSPAVIELARVVDRGIRESGMVDLSKLVLLKDK 131
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
V I D ++D GNL DA + AA A++LT + P+ + E + + E P+P
Sbjct: 132 SVIGIFADSSVIDVDGNLFDACSYAATAAILTAKLPKWEIQDEAPVRI-----EGETPVP 186
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ +P++VT + +++DP E AVM ++T T N++G++CA+QK G G
Sbjct: 187 --VTTIPVSVTMAKINGH--ILVDPNQDEWAVMDARITITTNSDGNICALQKGGNSGFTH 242
Query: 253 SVIMQCLRLASRMASDITKKIKDA 276
+ +++C ++ R+ +DI + IK A
Sbjct: 243 AELVKCGEISVRVGADIREIIKRA 266
>gi|374633081|ref|ZP_09705448.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
gi|373524565|gb|EHP69442.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
Length = 281
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 150/269 (55%), Gaps = 14/269 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + L G R DGR +YR +SI G + DGS+ V+LG T ++ V + +P
Sbjct: 15 KKESIVSLLEKGTRTDGRKFTDYRPISITLGYAKKADGSALVRLGDTTVLAGVKIEEDEP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D P +G L + E P+A +FE G P E+A+EL R+VDR LR+S+++D SL + G
Sbjct: 75 YPDTPAQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKSIDLSSLVIEEG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+ +LD GGN++DA +AA+A+L + P+ ++D V ++ E+
Sbjct: 135 KRVWTVWVDISVLDYGGNVLDACTLAAVAALYDTKLPKVV---KEDGSVKINKEEKVVSF 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL P+ VT LVIDP EE +M K++ + +G + IQK GEG
Sbjct: 192 PL---KYPV-VTVTVAKIGKFLVIDPDLEEEGIMDAKISFSYINDGHIVGIQK-SGEGSF 246
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVETY 280
S Q + A MAS ++++ + ++ Y
Sbjct: 247 SS---QEVEAAESMASLTSQRLFEELKKY 272
>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
Go1]
gi|29336794|sp|Q8PTT7.1|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 266
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 148/259 (57%), Gaps = 20/259 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + R DGR ++R+L ++ + +GS++V LG T ++ V Q P
Sbjct: 12 KKDYIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP 71
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D +EG + E +P+A P FE G P E A+E+ R+VDRG+RES A+D + LC+ G
Sbjct: 72 FPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVG 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+HIL+N GN++DA+ +AA+A+L+T P G GE+
Sbjct: 132 ESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGEN-------------- 177
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL + +P+ +T S+ L++DP+ EEAV K+T +++G V +QK G +
Sbjct: 178 VPLAMKEMPVGITLAKIGSK--LMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGPVPL 235
Query: 251 LQSVIMQCLRLASRMASDI 269
++ + + + +A A++I
Sbjct: 236 TEAELFEAIDMAIEKAAEI 254
>gi|389860736|ref|YP_006362976.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
gi|388525640|gb|AFK50838.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
Length = 282
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 146/263 (55%), Gaps = 14/263 (5%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR +S+ G + +GS+ V+LG T ++ V +L P+ DRPNEG
Sbjct: 23 LKKGERIDNRGLHDYRNISVSVGIISKAEGSALVKLGGTQVIAGVKAELGTPFEDRPNEG 82
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + EF P+A PSFE G P+E A+E+ R++DR LRE + VD L + G+L W I
Sbjct: 83 VLQVHAEFVPLASPSFEPGPPNEEAIEVARVIDRSLREPKVVDLSKLVIQPGRLAWVIYD 142
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D++++D+ GN++D IA++ +L T + P E ++V+ + PLP I+ L
Sbjct: 143 DVYVIDHDGNILDTGMIASMIALATSKLPRLDTTAE-GIKVVYG--TKDTPLP--INTLV 197
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV----LQSVI 255
VT G +LV+DP+ EE+V+ ++ +++ G + +QK G + L S +
Sbjct: 198 TTVTMGVLG--DILVVDPSLEEESVIDTFLSISVDEKGRIVGLQKRGPRSITPKTLDSAV 255
Query: 256 MQCLRLASRMASDITKKIKDAVE 278
L+ ++ S I + I + E
Sbjct: 256 EIALKAGEQVLSFIRRVISNPQE 278
>gi|149240693|ref|XP_001526201.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450324|gb|EDK44580.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 341
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 160/324 (49%), Gaps = 51/324 (15%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG-REDGSSEVQLGQTHIMGFVTGQLV 69
LT NEK F+ TAL S +R++GR+ + R +SI E G EV G T + ++ +
Sbjct: 7 LTANEKHFLHTALKSQLRLNGRSLMQLRDISIYLSPTEYGYVEVSFGSTKLSVRISASIT 66
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCV 128
+PY DRP EG I +E SPMA F+T R + V + RI+++ +R S A+D E+LC+
Sbjct: 67 KPYEDRPFEGIFVINSEISPMASLKFDTTRSQQQDEVLISRIIEKSIRRSNALDLENLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--------GGEDDLEV 180
+AG+ W I DL+ + G ++D A + +L F++P+ S+ G V
Sbjct: 127 IAGEQCWEITADLNFWNYDGGMIDIGCFATMLALSHFKKPDVSITHGGFGGSGNGGVNGV 186
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSES----------------------------- 211
I+H ER+P+ L I H+PI +T+ FF+ S
Sbjct: 187 IIHDVNERQPVGLSILHIPICLTYSFFNLGSKEMNIKGDDDIDNDNDGDLYGEGQVQGEK 246
Query: 212 -------LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV-LQSVIMQC---LR 260
+ ++D EE + G +T T+N N ++ + K GG + Q ++ C ++
Sbjct: 247 EQGEVREVCILDADAMEEQLRDGSITITMNKNREIIQLSKNGGVPIDAQKLVEICHDSMQ 306
Query: 261 LASRMASDITKKIKDAVET-YNTE 283
++ ITKKIK++ E YN E
Sbjct: 307 HIDKLTDLITKKIKESEEKRYNKE 330
>gi|452211131|ref|YP_007491245.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
gi|452101033|gb|AGF97973.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
Length = 263
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 148/259 (57%), Gaps = 20/259 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + R DGR ++R+L ++ + +GS++V LG T ++ V Q P
Sbjct: 9 KKDYIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP 68
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D +EG + E +P+A P FE G P E A+E+ R+VDRG+RES A+D + LC+ G
Sbjct: 69 FPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVG 128
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+HIL+N GN++DA+ +AA+A+L+T P G GE+
Sbjct: 129 ESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGEN-------------- 174
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL + +P+ +T S+ L++DP+ EEAV K+T +++G V +QK G +
Sbjct: 175 VPLAMKEMPVGITLAKIGSK--LMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGPVPL 232
Query: 251 LQSVIMQCLRLASRMASDI 269
++ + + + +A A++I
Sbjct: 233 TEAELFEAIDMAIEKAAEI 251
>gi|339239765|ref|XP_003375808.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
gi|316975514|gb|EFV58947.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
Length = 448
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 149/284 (52%), Gaps = 11/284 (3%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNE 78
+E S+ R D R E+R + + FGR GS + G T + + +V P RP+
Sbjct: 30 LEEGFSTNSREDLRENEEFRPVRLCFGRAFGSCVAEFGNTKVFVKTSCSVVTPSLTRPSS 89
Query: 79 GTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIR 138
G L I EF P A +E GR E +E R+++R ++++R V ++LC+++G+ VW IR
Sbjct: 90 GILKINLEFGPQAVAHYEVGR-LEKCIEYQRLLERNIKDARCVCLDTLCIISGEKVWQIR 148
Query: 139 IDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHL 198
D+++L+N G+LVD A +A L++L FR P + G D +H +++EPL L I H
Sbjct: 149 CDVYVLNNDGSLVDCACVAILSALRHFRIPSVTRHGTD---YTIHSFDDKEPLRLDIFHY 205
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
P +T G++S + + + +P+ EE V+ +NA+ + I + S+I+
Sbjct: 206 PCMITLGYYSGKEIFICEPSLLEETVLDQCFILAMNAHFEFTLIHHLKPQPYKDSLIL-- 263
Query: 259 LRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSV 302
R S I ++K V+ N E IKR ++ T GS+
Sbjct: 264 -----RAKSIIHSRVKQLVDLINREIEEDIIKRSSSNFTGFGSL 302
>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
Length = 257
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 146/267 (54%), Gaps = 24/267 (8%)
Query: 13 VNEKR--FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
VN+ R ++ + +G R DGR EYR +S++ R +GS+ V++G T ++ V +
Sbjct: 6 VNDVRTDYVCDMVRNGKREDGRGFHEYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L P+ D P++G + E P+A P FE+G P+E++++L R+VDRG+R S +D + LC
Sbjct: 66 LGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLEVIVHPP 185
+ G+ VW + ID+H+LD+ GNLVDAA + A+ SLL R P L GE+
Sbjct: 126 IEEGEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGEN--------- 176
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
LP+ P+A T E +++DP+ E +T NA+G + +QK
Sbjct: 177 ----TLPM--RDTPVAAT--MVEIEGNILVDPSFDEGNAAASSVTVISNADGTLSGMQKS 228
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKK 272
G G+ ++ I + + + A +I KK
Sbjct: 229 GSSGLKEAQIAEMVEIGIEKAGEIRKK 255
>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [Methanocella arvoryzae
MRE50]
gi|121687882|sp|Q0W2Y7.1|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [Methanocella arvoryzae
MRE50]
Length = 260
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 151/263 (57%), Gaps = 18/263 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
++ +I + + G R DGR E+R +S++ G + +GS+ V++G + ++ V Q +P
Sbjct: 10 KRDYIYSLANQGDRADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P+ G + E P+A P+FE+G P E A+EL R+VDRG+RES A+D LC+ +G
Sbjct: 70 FPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRGVRESGAIDLSKLCIESG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW + ID+H+LD+ GNL+DAA++ A+A+L + P G +D++ L
Sbjct: 130 QKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDVK-----------L 178
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL + +PI VT + +++DP+ EE+V K+T N G + +QK G +
Sbjct: 179 PL--NDVPIGVT--AVNIGGAIMLDPSLDEESVAPCKLTVITNKEGAISGMQKSGVGTLT 234
Query: 252 QSVIMQCLRLASRMASDITKKIK 274
I +RLA A+ + +K++
Sbjct: 235 PDQINHIIRLAKEKANVLREKLE 257
>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 267
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 139/227 (61%), Gaps = 12/227 (5%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
RIDGR+ E+R +SI+ G + +GSS V+LG T I+ V Q+ +P+ D P G +
Sbjct: 21 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 80
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+E PMA P+FE G P E +VEL R+VDR +RES+ +D E LC++ G VW + +DLHI+
Sbjct: 81 SELLPMASPTFEPGPPDERSVELSRVVDRCVRESQMIDLEKLCIIEGSKVWMLFLDLHII 140
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GNL DAA +A +A+LL R P + +D EV+V E +PLP I+ + TF
Sbjct: 141 DYDGNLFDAAVLATVAALLDTRIPAAEV---EDGEVLVD-RENMQPLP--INRKALMCTF 194
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
E +++DP EE ++ +++ + +G +CA+QK GGEG L
Sbjct: 195 AKIGDE--IILDPCLEEEDILTARLSIGVTEDGSICAMQK-GGEGAL 238
>gi|209879934|ref|XP_002141407.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209557013|gb|EEA07058.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 414
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 171/326 (52%), Gaps = 18/326 (5%)
Query: 25 SGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
SG+RIDGR E+R++ I + EV++G+TH++ + +L+ P DRP+EG ++
Sbjct: 11 SGLRIDGRTSNEFRRIQITLNKTFDGVEVKIGKTHVLCIIKAELMIPNIDRPSEGQVTFS 70
Query: 85 TEFSPMA-DPSFETGRPSESA--VELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDL 141
++ P++ +P+ + R +A +EL ++R L+E+ A DTE LC+++G W+IR D+
Sbjct: 71 VDYGPLSLNPNGQVYRHERNALSIELANYIERTLKETGAFDTEVLCIISGLCAWSIRCDI 130
Query: 142 HILDNGGNLVDAANIAALASLLTFRRP--ECS---------LGGEDDLEVIVHPPEEREP 190
L + GNL D +A L++ FR +CS D I + +
Sbjct: 131 RALCDDGNLFDTCILATLSAFRHFRYKDIDCSSFLNKLKLNKYKNKDYLRIEQAIKNMDM 190
Query: 191 LPLIIHHLPIAVTFGF--FSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+PL I+H P++++ G+ ++E ++DP EE+++ + +N VC + KPGGE
Sbjct: 191 IPLNIYHFPLSISIGYTRVNNELQYIVDPCSEEESILQAVLHIAINGGQQVCGLSKPGGE 250
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKL 308
+ I ++LA S+I + +K V NT KI+ S L SV++ +
Sbjct: 251 KLTIDQINFAIQLAKNHGSNIHEYVK-KVFIANTNEKEIKIENVNNSTDLVVSVDVDNIV 309
Query: 309 NEPSGHNVVNELSRKHLEKPRLASAE 334
+ + N++ + + ++ ++A+ E
Sbjct: 310 SSANSSNLL-DFTEIKIDNSKIANNE 334
>gi|443895452|dbj|GAC72798.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Pseudozyma
antarctica T-34]
Length = 321
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 159/311 (51%), Gaps = 38/311 (12%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E F L +G+R+DGR+ R + I FG E G+ V + T + V L+ P D
Sbjct: 13 EAEFTLACLQNGLRVDGRSFLAARPVDIHFGEELGNVTVAIKGTRVSTSVRATLMPPRSD 72
Query: 75 RPNEGTLSIFTEFSPMADPSFET--GRPSESA----VELGRIVDRGLRESRAVDTESLCV 128
RP EG L I T+ SPMA +++ G + SA V R++++ +R + AVD E+LCV
Sbjct: 73 RPYEGFLQITTDISPMAGVEYDSTGGGANSSARAREVLFDRLIEKAVRRTEAVDREALCV 132
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+AG+ VW + + +H+L + G +DAA ++++ SL FRRP+ S+ E+ +V ++ +ER
Sbjct: 133 VAGEQVWNVHLTVHLLSDTGAALDAAVLSSMLSLRHFRRPDYSI--ENGNQVRLYSADER 190
Query: 189 EPLPLIIHHLPIAVTFGFFS------------------------------SESLLVIDPT 218
P+PL IHH P+ VTF F+ S S+ ++DP+
Sbjct: 191 VPVPLAIHHTPLCVTFSIFNLVPTKPTQPEKNDDDDLIEPTSSTPTQTADSGSVALLDPS 250
Query: 219 HHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
EE + K+T LNA ++C + K G + +++ + + +T+ ++ A++
Sbjct: 251 LLEETLAHSKLTLVLNAQREICVLDKSYGSPINPHTLLELINVGLNRIDVLTETLETALK 310
Query: 279 TYNTERALRKI 289
R + I
Sbjct: 311 NDAATRIIEVI 321
>gi|298713749|emb|CBJ33722.1| 3'-5'-exoribonuclease/ RNA binding [Ectocarpus siliculosus]
Length = 174
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDG--SSEVQLGQTHIMGFVTGQLVQP 71
N+ FI +L G R DGR + R L + F R +G S+E+QLG+T ++G VTG++V P
Sbjct: 12 NDHDFILRSLRGGRRADGRQLGDMRLLRMVFARAEGQASAEIQLGRTRVLGVVTGEVVPP 71
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ DRP EG L E PMA S R S +VE+ R+++ G+R+S+A+DTE+LC++ G
Sbjct: 72 FPDRPTEGFLHFNVELGPMAAASVGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGG 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 169
+ VW +R D+HILD+GGNL+DA +A +A+L FRRPE
Sbjct: 132 EKVWQLRCDVHILDHGGNLIDACTLATMAALRHFRRPE 169
>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
Length = 257
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 147/267 (55%), Gaps = 24/267 (8%)
Query: 13 VNEKR--FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
VN+ R ++ + +G R DGR EYR +S++ R +GS+ V++G T ++ V +
Sbjct: 6 VNDVRTDYVCDLVRNGKREDGRGFREYRDISVERDVIKRAEGSARVKIGDTEVLVGVKVE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L P+ D P++G + E P+A P FE+G P+E++++L R+VDRG+R S +D + LC
Sbjct: 66 LGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLEVIVHPP 185
+ G+ VW + ID+H+LD+ GNLVDAA + A+ SLL R P L GE+
Sbjct: 126 IEEGEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPNERYGLTGEN--------- 176
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
LP+ P+AVT E +++DP+ E +T NA+G + +QK
Sbjct: 177 ----TLPM--RDTPVAVT--TVEIEGNILVDPSFDEGNAAASSVTVISNADGALSGMQKS 228
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKK 272
G G+ ++ I + + + A +I KK
Sbjct: 229 GSGGLKEAQIAEMVEIGIEKAGEIRKK 255
>gi|347524282|ref|YP_004781852.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
gi|343461164|gb|AEM39600.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
Length = 327
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 149/278 (53%), Gaps = 13/278 (4%)
Query: 9 WRLTVN---EKRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMG 62
W L V EK IE+ L G R+DGR + R + I G+ +GS+ V+LG T ++
Sbjct: 6 WMLPVVPRLEKETIESLLERGARLDGRRLDQIRSIEIIPGYVGKAEGSALVKLGNTMVLA 65
Query: 63 FVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD 122
V + QP+ D P+E L + EF P+A P FE G P E+A+EL R+VDR LRE RAV
Sbjct: 66 GVKMDITQPFPDTPDEAVLVVHAEFVPLASPVFEPGPPDENAIELARVVDRALREIRAVA 125
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV 182
+ L + GK VW I +D+++L++ GNL+DA+ +A++A+L+ R P GE +
Sbjct: 126 LDRLVLEPGKAVWRIYVDIYVLNHDGNLLDASMLASMAALMATRVPAVRRTGEG---FAI 182
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
LP I++ + VT S +V+DP+ EE V ++ ++ + + +
Sbjct: 183 ERGRYTGLLP--INNRVVTVTVAKIGSR--MVVDPSFDEELVADVRLAVAVSDDNRIAGL 238
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETY 280
Q G + + I + +A R A + K +++ VE Y
Sbjct: 239 QMMGMGYMTEKEISTAIEMAMRTAPVLLKALQEKVEPY 276
>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
DSM 5456]
gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
Length = 328
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 155/274 (56%), Gaps = 14/274 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +ET LS G+R+DGR E R + I G R +GS+ V+LGQT ++ V +V P
Sbjct: 15 KKHTMETLLSRGVRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQTVVLAGVKTDIVAP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D PNE L + EF P+A P+FE G P E+A+EL R++DR LRE +AV + L + G
Sbjct: 75 FPDTPNEAVLVVHAEFVPLASPTFEPGPPDENAIELARVIDRSLREIKAVALDKLVLEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +DL+IL++ GNL DA+ +AA+A+L+T R P ++ ED V +R
Sbjct: 135 KHVWRLYVDLYILNHDGNLFDASMLAAMAALMTTRLP-AAVKTEDGYTV------DRSKF 187
Query: 192 P--LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+ ++H + VT S+ L++DPT+ EE V ++ ++ +G + IQK G
Sbjct: 188 TGLVPVNHKVVTVTIAKLSNR--LIVDPTYEEEQVADTRLVVAVSDDGRIAGIQKTGMGD 245
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ ++ + +A A K +++ V Y E
Sbjct: 246 LTYKEVLTAVAIALNKAQVYLKALEEKVVPYRAE 279
>gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
Length = 286
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 143/261 (54%), Gaps = 8/261 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L+ G +D R YR +KF D S +LG T I+ V ++ QP+ D PNEG
Sbjct: 22 LNKGFHVDRRPLTSYRSFEVKFNIAPNADSSVLFKLGNTQILAGVKLEVGQPFPDSPNEG 81
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + E+ P A P+FE G P E+A+EL R++DRGLRE++ + + L ++ GK VW + +
Sbjct: 82 ILIVNAEYLPAASPTFEPGPPDENAIELARVIDRGLREAKVIALDKLVIVPGKRVWIVWL 141
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D++ILD+ GNL+DA+ +A++ +L T P + D L V R+ L ++
Sbjct: 142 DIYILDHDGNLIDASAMASMLALATTFIPYYEV---DPLTSNVKIDRTRKLQRLPLNRYV 198
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
++VT LLVIDPT EEA+ K+ +++ G++ IQK G V + I + +
Sbjct: 199 VSVTVNKIG--DLLVIDPTGEEEAIASSKLAISISEEGNIVGIQKMGIGYVTEDDINKAI 256
Query: 260 RLASRMASDITKKIKDAVETY 280
+A + D +K+K + +
Sbjct: 257 DIALSIGIDNIEKLKKIINQW 277
>gi|84490040|ref|YP_448272.1| exosome complex RNA-binding protein Rrp42 [Methanosphaera
stadtmanae DSM 3091]
gi|84373359|gb|ABC57629.1| putative exosome complex, exonuclease 2 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 265
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 142/251 (56%), Gaps = 13/251 (5%)
Query: 23 LSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L+ G RID R EYR +SIK G+ DGS+ V +G T ++ V Q+ P+ + PN G
Sbjct: 17 LNQGKRIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGVKAQMTTPFNNAPNSG 76
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
+ TE +A +FE G P++ AVE+ R+VDR +RES VD + LCV+ G W + I
Sbjct: 77 IIITNTELLAIASRNFEYGPPNKFAVEISRVVDRAIRESPVVDLDKLCVIEGSKSWKLHI 136
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPPEEREPLPLIIHHL 198
D++I+D GN++DAA + A+ +LLT + P S+ GE IV E PLP I +
Sbjct: 137 DMYIVDFDGNIMDAACLGAICALLTTKIPTATSVNGE-----IVIDEENLTPLP--IKNR 189
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
I T +++ L++DP+ EE +M ++ +G +CA+QK G + + +
Sbjct: 190 SILCTVVKINNQ--LIVDPSKIEEILMDSSVSFGFREDGSLCALQKCGLNTLTHKEVTKA 247
Query: 259 LRLASRMASDI 269
+++AS A ++
Sbjct: 248 MKIASIRAKEL 258
>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
Length = 268
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 147/265 (55%), Gaps = 12/265 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K +I + G R+DGR EYR + + F + +G + ++LG+T ++ V L +P+
Sbjct: 13 KDYIRDLVEKGQRVDGRGLHEYRPIEVLNGTFTKAEGEAWLKLGETQVLVGVKADLGEPF 72
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G E P+A P+FE G P E A+EL R+VDR +R + A+D SL +L GK
Sbjct: 73 PDTPDKGVFVSNAELLPVASPTFEPGPPDEGAIELARVVDRAIRSADAIDLGSLVILPGK 132
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
LV+ I +D+++LD GNL D+ +A+L +L PE L ++EV E + L
Sbjct: 133 LVYMIFLDMYVLDYDGNLEDSLTLASLIALGRSEIPEVELKENGEIEV----KESKRKLE 188
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L +PI F F S +++DPT EE+V +T +N +G VC++QK G ++
Sbjct: 189 L--KDIPI--NFSFVKIGSKILLDPTLEEESVSDASITVAINKDGKVCSVQKRHGTFTVE 244
Query: 253 SVIMQCLRLASRMASDITKKIKDAV 277
I+ + +A ++ + +++A+
Sbjct: 245 E-ILNIVNVARSKWPELARIVREAI 268
>gi|443919691|gb|ELU39792.1| exosome complex exonuclease rrp45 [Rhizoctonia solani AG-1 IA]
Length = 372
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 151/269 (56%), Gaps = 16/269 (5%)
Query: 18 FIETAL--SSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
F+ T+L S IR+DGR+P + R + FG G E ++G+T + V+ + +P DR
Sbjct: 93 FVLTSLRASPPIRVDGRSPMQARDPELTFGDSLGWVECRMGKTSALANVSATMTRPRPDR 152
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR-AVDTESLCVLA---G 131
P EGT++I TE SPMA ++ GR E L + +SR A+D+ L + G
Sbjct: 153 PYEGTVTIHTELSPMAAAIYDAGRLFEGVRPLTEKLCVFSPDSRYAIDSPLLTLNPFGLG 212
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV------HPP 185
+ VWA+R+ +H+L + GN++D A +AA+ +L FRRP+ + G+ EVI+ H P
Sbjct: 213 QKVWALRLTIHVLSDEGNMLDCACLAAVTALRHFRRPDVEVVGD---EVIIVGIRFSHDP 269
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
EER PLPL +HH P V+F F E L V+DP H E + + ++ L ++C +QK
Sbjct: 270 EERAPLPLSLHHTPYCVSFTFL-DEDLPVLDPNHLETQISLSSLSLALTPARELCTVQKA 328
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIK 274
GG + +++ + +A+ A ++ ++
Sbjct: 329 GGLALDADEMLRLVDIAAGRAKELNSLVE 357
>gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma
acidophilum]
Length = 240
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 145/256 (56%), Gaps = 23/256 (8%)
Query: 23 LSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+ G RIDGR P E+R+L+I R +GS+ V LG T ++ V + +P+ D P++G
Sbjct: 1 MKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQG 60
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L+ E P+A PSFE G P++ A+E+ R+VDRG+RES+ + E L + GK VW + +
Sbjct: 61 VLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFL 120
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+++LD GNL+DA+ IAA+A+L P GGED L + P
Sbjct: 121 DINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGED--------------FKLPVSSTP 166
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
I+VT LV DP+ E+ + G++T T +G + A+QK G + + ++ +
Sbjct: 167 ISVT--MVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK----GEIGAFTVEDV 220
Query: 260 RLASRMASDITKKIKD 275
+ A +M+ ++ KK+++
Sbjct: 221 KKAVKMSLEVGKKLRE 236
>gi|407425705|gb|EKF39504.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi
marinkellei]
Length = 333
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 154/293 (52%), Gaps = 27/293 (9%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++ ++F S V+ G T + + +LV
Sbjct: 15 LTQREVEFTKSAWLAGLRPDQRGAQQLREVKVEFPLLSRDLSCVRCGGTIVTAAIACELV 74
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA--VELGRIVDRGLRESRAVDTESLC 127
+PY RP G L +FS + P E +++A +L ++R ++ VDTESLC
Sbjct: 75 EPYPYRPKHGML----DFS-VRQPCTERDSSAKTAGLKKLTAFLERLIKGGGVVDTESLC 129
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
VL G+ VW+I +D+ +L++ GN+ D A A +A LL +RRPE ++ G+ VIVHP E
Sbjct: 130 VLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRPELTIRGDS---VIVHPTHE 186
Query: 188 REPLPLIIHHLPIAVTFGFF---------------SSESL-LVIDPTHHEEAVMVGKMTA 231
R+P+PL IHH P+ +F S E+L +V+DPT E +
Sbjct: 187 RDPVPLSIHHTPLCFSFAVTMAPGDRNKLARGRRDSQEALEVVVDPTFAEATAASSSVLV 246
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
+NA G VC++ K G + + + C+ AS +A I I+DA+ ++ R
Sbjct: 247 AVNAEGQVCSVSKSEGSCIHLNELNHCMETASLLAPHILSLIRDAMAAHDKRR 299
>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
Length = 283
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 145/262 (55%), Gaps = 14/262 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + L G R DGR +YR LSI G + DGS+ V+LG T ++ V + +P
Sbjct: 15 KKESIISLLERGSRNDGRKFNDYRPLSITLGYAKKADGSALVKLGDTTVLAGVKIEEDEP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+AVD +L + G
Sbjct: 75 YSDTPNQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRSLRDSKAVDLSALVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+ +LD GGN++DA ++A+A+L + P D+ + + ++ P
Sbjct: 135 KRVWTVWVDISVLDYGGNILDACTLSAVAALYDTKLPRIV---NDNGTINIVKEDKTTPF 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P+ P+A T LV+DP EE +M K++ + +G + IQK GEG
Sbjct: 192 PI---RYPVA-TVTIAKLGKFLVVDPDLEEEGIMDAKISFSYIPDGHIVGIQK-SGEG-- 244
Query: 252 QSVIMQCLRLASRMASDITKKI 273
S Q + +A + +++K+
Sbjct: 245 -SFSQQEIEIAENTSRTVSQKM 265
>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
7]
gi|29336897|sp|Q975G9.1|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
gi|342306197|dbj|BAK54286.1| exosome core subunit Rrp42 [Sulfolobus tokodaii str. 7]
Length = 275
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 151/262 (57%), Gaps = 14/262 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I AL GIR+DGR +YR +S+ + +GS+ V+LG T ++ V + +P
Sbjct: 15 KKESILNALERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+AVD L ++ G
Sbjct: 75 FPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW +D+++LD GGN++DA +AA+A+L + P+ + G D++++I + P+
Sbjct: 135 KKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEG-DNVKIIKEEKTDVTPI 193
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
+ + +A G + LV+DP+ EE++ K++ + +G + +QK
Sbjct: 194 AYPVVTVTVA-KIGKY-----LVVDPSLDEESIADVKISFSYVQDGRIVGMQKSN----F 243
Query: 252 QSVIMQCLRLASRMASDITKKI 273
S+ +Q + +A +A ++K+
Sbjct: 244 GSLSLQEVDVAESLARSASQKL 265
>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
Length = 238
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 131/243 (53%), Gaps = 22/243 (9%)
Query: 35 FEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMA 91
++R + ++ + +GS+ VQ+G T ++ V + P+ D PN+G L E P+A
Sbjct: 8 LDFRDIIVERDLIKKAEGSTRVQIGDTVVLVGVKVEPGAPFPDTPNKGVLMTNAELVPLA 67
Query: 92 DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLV 151
P FE+G P E+++EL R+VDRG+R S +D E LC+ G+ VW I ID+H LDN GNLV
Sbjct: 68 SPEFESGPPGENSIELARVVDRGIRGSETIDLEKLCIEEGEKVWMIFIDIHTLDNDGNLV 127
Query: 152 DAANIAALASLLTFRRP--ECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
DAA + A+ SLL P + L GED L+ I P+AVT
Sbjct: 128 DAAALGAIMSLLNVTIPYEQYGLTGEDTLQ---------------IRDTPVAVTVVEIGG 172
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
L++DP +EE+ K+T NA+G + +QK G G+ + I++ + A +I
Sbjct: 173 N--LLVDPNVYEESAATSKLTVISNADGSISGLQKSGSSGLTEEKIVKMTEIGIEKAREI 230
Query: 270 TKK 272
+K
Sbjct: 231 REK 233
>gi|312374015|gb|EFR21670.1| hypothetical protein AND_16645 [Anopheles darlingi]
Length = 371
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 123/197 (62%), Gaps = 3/197 (1%)
Query: 81 LSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRID 140
L + E PMA P F+ GR S+ +V L RI++R L++S VD ESLC++A + VW +RID
Sbjct: 2 LFVNVELGPMAAPHFDGGRQSDESVHLNRILERALKDSGCVDLESLCLVAEEKVWNLRID 61
Query: 141 LHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPI 200
+ +L++ GN++D +IAAL +L F+RP+ ++ GE+ VIVH EE+EP+ + + H PI
Sbjct: 62 VTVLNHEGNVIDCCSIAALTALAHFKRPDITVDGEN---VIVHTLEEKEPIKVTLFHYPI 118
Query: 201 AVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLR 260
V++ F+ ++ V DP++ EE V M +N+ G++C + G ++++
Sbjct: 119 CVSYAIFNKGTVAVADPSYLEERVAEAMMVFGINSYGELCGLHLGGITLTSADLLLRTSV 178
Query: 261 LASRMASDITKKIKDAV 277
AS+ A + +KIK A+
Sbjct: 179 KASKRARMLVEKIKSAI 195
>gi|323509319|dbj|BAJ77552.1| cgd7_2380 [Cryptosporidium parvum]
Length = 408
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 152/277 (54%), Gaps = 16/277 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
FI + G+R+DGR EYR + I + G EV +G+TH++ V +LV P ++R +
Sbjct: 4 FIVSVREYGLRLDGRTMNEYRNVKINLNKNYGEVEVNIGRTHVLSVVKSELVAPSQERSS 63
Query: 78 EGTLSIFTEFSPMA-DPSFETGRPSESAV--ELGRIVDRGLRESRAVDTESLCVLAGKLV 134
EG +S + P++ +P+ R + + + E+ ++R L+E+ A+DTE LC+L+G V
Sbjct: 64 EGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYIERILKETGAIDTEILCILSGVCV 123
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE-----------CSLGGEDDLEVIVH 183
W+++ ++H+L + GNL DA +A L+ L +R E C GE D + + +
Sbjct: 124 WSVKCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGFGERDYQRLEN 183
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLL--VIDPTHHEEAVMVGKMTATLNANGDVCA 241
+ E +P +HH P++++ G+ + + L ++DP EE++ + ++N +VC
Sbjct: 184 TIRKLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCG 243
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
I K GG + + I +++A+ + + ++ K A +
Sbjct: 244 ISKFGGAKLSLNQINFAIQIATIHSEKLHQEFKKAFD 280
>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
burtonii DSM 6242]
gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
DSM 6242]
Length = 259
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 133/225 (59%), Gaps = 20/225 (8%)
Query: 26 GIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLS 82
G R DGR E R L I+ + +GS++V LG T ++ V Q+ P+ D ++G +
Sbjct: 20 GQREDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVGVKLQVGSPFADSADKGVII 79
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
E +P+A P+FE G P E A+E+ R+VDRG+RES A+D LC+ G+ VW + ID+H
Sbjct: 80 TSMELNPIASPNFEAGPPREKAIEMARVVDRGIRESGAIDLNKLCITEGEEVWIVFIDVH 139
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREPLPLIIHHLPIA 201
+L++ GNL+DAA++ A+A+L+T P G GED + L I +P++
Sbjct: 140 VLNDSGNLLDAASLGAIAALMTATIPGEREGRGED--------------VKLPIREMPVS 185
Query: 202 VTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
++F E LVID T++EE+V ++T N +G +CA+QK G
Sbjct: 186 LSFIDIGGE--LVIDATNNEESVSDLRLTIVTNQDGSICAMQKSG 228
>gi|66362890|ref|XP_628411.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
gi|46229803|gb|EAK90621.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
Length = 432
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 152/277 (54%), Gaps = 16/277 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
FI + G+R+DGR EYR + I + G EV +G+TH++ V +LV P ++R +
Sbjct: 28 FIVSVREYGLRLDGRTMNEYRNVKINLNKNYGEVEVNIGRTHVLSVVKSELVAPSQERSS 87
Query: 78 EGTLSIFTEFSPMA-DPSFETGRPSESAV--ELGRIVDRGLRESRAVDTESLCVLAGKLV 134
EG +S + P++ +P+ R + + + E+ ++R L+E+ A+DTE LC+L+G V
Sbjct: 88 EGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYIERILKETGAIDTEILCILSGVCV 147
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE-----------CSLGGEDDLEVIVH 183
W+++ ++H+L + GNL DA +A L+ L +R E C GE D + + +
Sbjct: 148 WSVKCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGFGERDYQRLEN 207
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLL--VIDPTHHEEAVMVGKMTATLNANGDVCA 241
+ E +P +HH P++++ G+ + + L ++DP EE++ + ++N +VC
Sbjct: 208 TIRKLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCG 267
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
I K GG + + I +++A+ + + ++ K A +
Sbjct: 268 ISKFGGAKLSLNQINFAIQIATIHSEKLHQEFKKAFD 304
>gi|344302579|gb|EGW32853.1| hypothetical protein SPAPADRAFT_136976 [Spathaspora passalidarum
NRRL Y-27907]
Length = 304
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 156/289 (53%), Gaps = 24/289 (8%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEY-RKLSIKFG-REDGSSEVQLGQTHIMGFVTGQLVQP 71
N+++F+ +L G R+ R PF++ R +S+ E G EV G+T + VT + P
Sbjct: 10 NQRKFLLESLKHGFRLTDR-PFDHVRDISLYLSPTEYGYVEVSWGKTKLACRVTATVTTP 68
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP EG +I +E S MA F+T R +E + + RI+++ +R S ++D ESLC++AG
Sbjct: 69 YEDRPFEGIFTINSEISTMASMRFDTSRSNEEIL-IARIIEKAVRRSNSLDLESLCIIAG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW I +DL+ L+ GN +D A + +L F++P+ S+ G ++VH ER+P+
Sbjct: 128 EKVWEITVDLNYLNYDGNFIDVGCFAVMLALHHFKKPDISINGN---SIVVHDINERQPV 184
Query: 192 PLIIHHLPIAVTFGFFS------------SESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
PL I H+PI +T+ F++ ++ + ++D EE G + TLN N ++
Sbjct: 185 PLSILHIPICLTYSFYNLTDKESNIKGEDADEICLLDADLLEELNRDGSLVITLNKNREL 244
Query: 240 CAIQKPGGEGV----LQSVIMQCLRLASRMASDITKKIKDAVET-YNTE 283
+ K GG + + + ++ ++ I KIK+ E Y TE
Sbjct: 245 IQLSKNGGLPISAQQFLELTFKSMKTIDQLTDLIKTKIKEHEELRYKTE 293
>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
Length = 283
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 134/235 (57%), Gaps = 12/235 (5%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
K+ IE G+RID R +YR+LSI+ DGSS V LG T +M V ++ +P+
Sbjct: 20 KKMIE----QGVRIDNRGLNDYRELSIRVNVVKTADGSSLVSLGNTKVMAGVKVEVGKPF 75
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P+EG L + E +P A P E G P E+A+E+ R+VDR +R S +D +SL ++ GK
Sbjct: 76 EDTPDEGALIVNLEIAPTASPDIEPGPPDENAIEIARVVDRAIRHSGFLDFKSLSIVTGK 135
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
W + +D+++L++ GNLVDA+ IAA+A+L+ P+ L ++ I R PL
Sbjct: 136 HAWFLWVDIYVLNHDGNLVDASTIAAVAALMNTALPKVELDPAGNILKIDR--SARSPLR 193
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
L LP+ +T + + L++DPT EE + G + A G+V AIQK G
Sbjct: 194 LNTDKLPLTIT--YVKIGNFLLVDPTREEEDLSDGVYITGI-AGGNVVAIQKVTG 245
>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
str. IM2]
gi|29336869|sp|Q8ZVN0.1|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 274
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 11/263 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L++ R+DGR P + R + I G DGS+EV+LG+TH++ V L QP+ D
Sbjct: 20 IRRLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDA 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+EG L + E P A P E G P E A+EL R+VDRG+R VD + L V GK +
Sbjct: 80 PDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGK-AY 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ IDL+++++ GNL+D AN+A++A+L + P +D+ V+ + PLP+ I
Sbjct: 139 VLWIDLYVINDDGNLIDVANLASVAALKNTQLPVVV---KDEAGVVKLDRNNKAPLPVDI 195
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
PIAV+ G ++L +DPT EE + G++T T + + + A QK G QS I
Sbjct: 196 SKAPIAVSVGKIG--NVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTLGY-FTQSEI 251
Query: 256 MQCLRLASRMASDITKKIKDAVE 278
L LA R + + +K A++
Sbjct: 252 EAALNLALRGRDRLLEALKSALK 274
>gi|119719493|ref|YP_919988.1| exosome complex RNA-binding protein Rrp42 [Thermofilum pendens Hrk
5]
gi|119524613|gb|ABL77985.1| ribosomal RNA-processing protein RRP42 [Thermofilum pendens Hrk 5]
Length = 272
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 150/267 (56%), Gaps = 12/267 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I +L+ G R+DGR +YR++ ++ G+ DGS+ V LG T ++ V + P
Sbjct: 12 KKEVILASLAKGERLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGVKLAIGTP 71
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D PNEG + E SP+A P FE G P E +EL R+VDRG R ++ VD L ++
Sbjct: 72 FPDAPNEGVQIVNAELSPVASPFFEPGPPGEEDIELARVVDRGFRSAKVVDLAKLSIIPS 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
W + ID++ LD+ GNLVDAA +AAL +LL + P S+ E+ + V+ +E++PL
Sbjct: 132 AKCWTLYIDIYPLDHDGNLVDAAGLAALLALLDTKLPRTSV-QENKIAVL----DEKDPL 186
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P I+ L + VT LV+DPT EE K+T + G++CAIQK G
Sbjct: 187 P--INTLVVYVTVAKIG--EYLVVDPTLEEELTADAKITFGITERGEICAIQKSGEGSFR 242
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVE 278
+++ +A + +S + + IK AVE
Sbjct: 243 PDEVLRARDMALKASSTLFEAIKKAVE 269
>gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium
GSS1]
gi|29336898|sp|Q97BZ4.1|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2
gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1]
Length = 260
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 147/263 (55%), Gaps = 23/263 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K +I T + G RIDGR P E+R+++I R +GS+ V LG+T ++ V + +P+
Sbjct: 14 KNYILTTMKGGKRIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEPF 73
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G L+ E P+A PSFE G P++ A+E+ R+VDRG+RES+ + + L + GK
Sbjct: 74 PDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW + +D+++LD GNL+DA IAA+++L P GGED
Sbjct: 134 KVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPASREGGED--------------FK 179
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L + + PI+VT LV DP+ E+ + G++T T +G + A+QK G GV
Sbjct: 180 LPVVNTPISVT--MVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGVFT 236
Query: 253 SVIMQCLRLASRMASDITKKIKD 275
+ ++ A +M+ + K I++
Sbjct: 237 ---LDDVKKAIKMSLKVGKNIRE 256
>gi|424811893|ref|ZP_18237133.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756115|gb|EGQ39698.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 260
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 145/252 (57%), Gaps = 12/252 (4%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR----EDGSSEVQLGQTHIMGFVTGQLVQPY 72
+ I + G R+DGR P EYR++ ++ G +GS+ V +G T ++ + + +PY
Sbjct: 6 KTIRSLADEGERLDGRQPHEYREIELETGYINETAEGSAYVSIGDTQLVVGLKVDVEEPY 65
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
DRP+ GTL E +PMA +E+G P E VEL R+VDRG+RE+ AVD E LC+ G+
Sbjct: 66 DDRPDAGTLVTNAELAPMAAREYESGPPQEPGVELARVVDRGIREAPAVDFEELCIEEGE 125
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
V+ + ID+H+L++ GNL+DAA + A+ASL P+ + ++ ++ PEE +P
Sbjct: 126 KVYTLFIDVHVLNDDGNLLDAAALGAMASLKDGFLPDYN----EEEGLLREQPEEGSDIP 181
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ +PI T G ++LL D T EE + ++T +G++ A+QK G + +
Sbjct: 182 M--ESVPITAT-GRRIGDNLL-FDTTSREEEALGARLTIAFTEDGNIVAMQKGGDDSMEL 237
Query: 253 SVIMQCLRLASR 264
S + + + +A +
Sbjct: 238 SDVTEAVEIAEQ 249
>gi|242776727|ref|XP_002478890.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722509|gb|EED21927.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 252
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 3/222 (1%)
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
++ ++ +P DR ++GT I E + M P++E R +E + R++DR +R S A+DT
Sbjct: 18 ISAEVSRPRDDRQSDGTFLIAMELTAMGSPAWENLRQNELETYVSRVLDRVIRHSNALDT 77
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
ESLC+L GK W IR D+H+ D GNL+D+A I +A L FRRP+ + D +V V
Sbjct: 78 ESLCILKGKSCWNIRADVHVTDYDGNLIDSACIGIMAGLQHFRRPDIEV---KDGQVRVF 134
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
ER P+PL I H P+++TF F +L++D T EE G + LN+ G+ CA+
Sbjct: 135 GINERVPVPLNITHKPLSITFQSFHEGKVLILDATRKEEQASEGDLIIALNSTGETCAVY 194
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
K G V ++ LA + +I I A+E RA
Sbjct: 195 KAAGSPVSALEVINKTNLAQQKVLEINGIISKALEADLARRA 236
>gi|424814254|ref|ZP_18239432.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339757870|gb|EGQ43127.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 262
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 137/248 (55%), Gaps = 13/248 (5%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFGR----EDGSSEVQLGQTHIMGFVTGQLVQP 71
+R I+ G+R DGRN EYR + I+ +GS+ V +G T ++ ++ + +P
Sbjct: 5 QRDIKQKAPEGVRHDGRNLEEYRDIEIETDYINETSNGSAMVSIGDTKVLVGISIDVEEP 64
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP GT+ E +PMAD FE+G P E VEL R+VDRG+RES A+D E LC+ G
Sbjct: 65 YSDRPESGTIVTNAELAPMADRDFESGPPREPGVELARVVDRGIRESEAIDLEELCIEPG 124
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ V+ + ID+H+L+N GNL+D +++AA+A+L + P S E ++ ++ + +
Sbjct: 125 EKVYTVFIDIHVLNNDGNLIDCSSLAAMAALKSGHLPAYSTE-----ERSLNRDQKWKDI 179
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
L P+ T + E +V D T E+ ++T +++ +G V A+QK G
Sbjct: 180 ELTTE--PVTATVCKINGE--MVFDTTREEQEAQEARLTVSIDQDGQVVAMQKGGTNSFS 235
Query: 252 QSVIMQCL 259
I Q +
Sbjct: 236 SDEISQAM 243
>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
Length = 271
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 137/246 (55%), Gaps = 15/246 (6%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV 69
+ +K I + GIR DGR +YR LSI + DGS+ V+LG T ++ ++
Sbjct: 13 IIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEID 72
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+PY D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L +
Sbjct: 73 KPYEDTPNQGNLIVNVELLPLAYTTFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIE 132
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK VW + +D+++LD GGN++DA +A++A+L + + ++ V+ E
Sbjct: 133 PGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE-------QISVNKNEVVG 185
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GE 248
LPL + P+ VT + LV+DP EE++M K++ + + + IQK G G
Sbjct: 186 KLPL---NYPV-VTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGS 241
Query: 249 GVLQSV 254
LQ +
Sbjct: 242 MSLQDI 247
>gi|307207928|gb|EFN85487.1| Exosome complex exonuclease RRP43 [Harpegnathos saltator]
Length = 279
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 144/275 (52%), Gaps = 8/275 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
T++ + ++ IR DGR +R +SI + D S+ +LG T ++ + +L
Sbjct: 7 TIHPVKHLQDHFVQDIRPDGRKFLSFRPISINVSSIVQADSSAIFKLGSTTVVCGIKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P G + E SP+ P F G PSE A + +++D L+ S A+D + LC+
Sbjct: 67 AIPKTDTPECGYIIPNVELSPLCSPKFRPGPPSEQAQVISKLIDIILKNSTAIDLKDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
KLVW + D+ L+ G+++DA A A+L T PE + E + V VHP + +
Sbjct: 127 CKRKLVWVLYCDMLCLNYNGSVIDACTGALTAALKTLTLPEVNYNLETGVTV-VHPKKRK 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P ++ LP++++F F + +L++DPT EE++ +G+++ +++ ++C + KPGG
Sbjct: 186 ---PFVMKMLPVSISFAIFEKQ-MLIVDPTDEEESLSLGRLSVVMDSEEEICYVHKPGGI 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ Q + + + +A A + I A+ T E
Sbjct: 242 PISQHLFSKAVEIAKTRADLVRSLIHAAISTLKVE 276
>gi|383319304|ref|YP_005380145.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
gi|379320674|gb|AFC99626.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
Length = 259
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 147/264 (55%), Gaps = 18/264 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
++ +I + + G R DGR E+R +S++ G + +GS+ V++G++ ++ + Q +P
Sbjct: 10 KRDYIYSLANQGDRADGRKFDEFRPISVEVGVISKAEGSARVKIGESQVVVGIKVQPGEP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P+ G + E P+A P+FE G P E A+EL R+VDRG+RES A+D LC+ +G
Sbjct: 70 FPDAPDSGVIITNLELVPLASPTFEAGPPREDAIELARVVDRGVRESGAIDLSKLCIESG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW + ID+H+LD+ GNL+DA+++ A+A+L+ P G +D++ L
Sbjct: 130 QKVWMVFIDVHVLDHDGNLMDASSLGAIAALMNTVIPNSRFGLGEDVK-----------L 178
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL +PI VT +L DP+ EE V K+T N G + +QK G +
Sbjct: 179 PL--RDIPIGVTAVDIGGAIML--DPSLDEENVASCKLTVITNKEGALAGMQKSGVGTLT 234
Query: 252 QSVIMQCLRLASRMASDITKKIKD 275
+ + LA A+ I +K+++
Sbjct: 235 PEKVKYIVHLAKEKANVIREKLEE 258
>gi|67609743|ref|XP_667059.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis
TU502]
gi|54658150|gb|EAL36827.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis]
Length = 408
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 151/277 (54%), Gaps = 16/277 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
FI + G+R+DGR EYR + I + G EV +G+TH++ V +LV P ++R +
Sbjct: 4 FIVSVREYGLRLDGRTMNEYRNVKINLNKNYGEVEVNIGRTHVLSVVKSELVAPSQERSS 63
Query: 78 EGTLSIFTEFSPMA-DPSFETGRPSESAV--ELGRIVDRGLRESRAVDTESLCVLAGKLV 134
EG +S + P++ +P+ R + + + E+ ++R L+E+ A+DTE LC+L+G V
Sbjct: 64 EGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYIERTLKETGAIDTEILCILSGVCV 123
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE-----------CSLGGEDDLEVIVH 183
W+++ ++H+L + GNL DA +A L+ L +R E C E D + + +
Sbjct: 124 WSVKCEIHVLFDDGNLFDACLMATLSGLKHYRYNEIDVDSFLKKSKCEGLEERDYQRLEN 183
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLL--VIDPTHHEEAVMVGKMTATLNANGDVCA 241
+ E +P +HH P++++ G+ + + L ++DP EE++ + ++N +VC
Sbjct: 184 TIRKLEMIPFNVHHFPLSISIGYINGKEGLSYIVDPNSDEESISDTIIHISINDKQEVCG 243
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
I K GG + + I +++A+ + + ++ K A +
Sbjct: 244 ISKFGGAKLSLNQINFAIQIATIHSEKLHQEFKKAFD 280
>gi|307187131|gb|EFN72375.1| Exosome complex exonuclease RRP43 [Camponotus floridanus]
Length = 284
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 141/274 (51%), Gaps = 8/274 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
T++ ++++ L GIR DGR +R +S+ + D S+ +LG T + + +L
Sbjct: 7 TIHPVKYLQDHLEQGIRPDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTSAVCGIKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + E SP+ P F G PSE A L +++D L SRA+D + LC+
Sbjct: 67 ATPKADIPDHGYIVPNVELSPLCSPKFRPGPPSEQAQVLSKLIDIVLSNSRALDLKDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
KLVW + D+ L+ G+++DA A +A+L T PE + E VIV PE R
Sbjct: 127 CKNKLVWVLYCDILCLNYNGSVIDACIGAMIAALKTLTLPEINYNSETG--VIVTHPENR 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ + LP++ +F F + LL++DP+ EE + + + ++ ++C I KPGG
Sbjct: 185 K--AFTVRTLPVSASFAIFEKQ-LLLVDPSDDEEDMSSTRFSIVMDDEEEICYIHKPGGI 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNT 282
+ Q+++ + L + A I I A+ T N
Sbjct: 242 PISQNLLCKGLEMTKVRAKSIRSVINAAISTLNV 275
>gi|297527571|ref|YP_003669595.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
gi|297256487|gb|ADI32696.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
Length = 285
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 146/267 (54%), Gaps = 9/267 (3%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I+ L G RIDGR EYR + + + +GS+ V+LG T ++ V ++ PY DR
Sbjct: 19 IKKLLKQGERIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGNTFVITGVKLEIGTPYSDR 78
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
PNEG L + EF P+A P+FE G P E+A+E R++DR LRE +A+ E L V+ GK VW
Sbjct: 79 PNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRSLREPKAIRLEDLVVIPGKKVW 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
I DL+++D+ GN++D ++ + +L + P +D V++ + PLPL +
Sbjct: 139 LIFNDLYLIDHYGNIIDTGMLSTMLALNMTKIPRIV--SIEDENVVIDKTVKEAPLPLNL 196
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
+ + VT G ++ EE V+ ++T ++ + IQK G +G+ +I
Sbjct: 197 NV--VTVTLGIIDDIIIVDP--NIDEELVVDSRITFAIDETNRIVGIQKMGMKGIKPKMI 252
Query: 256 MQCLRLASRMASDITKKIKDAVETYNT 282
Q + +A + AS++ +++ + NT
Sbjct: 253 DQLVDIALKKASELHGLLREVLNNPNT 279
>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
P2]
gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
98/2]
gi|384434250|ref|YP_005643608.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
gi|29337006|sp|Q9UXC0.1|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
Length = 275
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 144/261 (55%), Gaps = 17/261 (6%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ 57
M + +N + + +K I + GIR DGR +YR LSI + DGS+ V+LG
Sbjct: 1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT 60
Query: 58 THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
T ++ ++ +PY D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+
Sbjct: 61 TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD 120
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL---TFRRPECSLGG 174
S+A+D L + GK VW + +D+++LD GGN++DA +A++A+L ++ + S G
Sbjct: 121 SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNG- 179
Query: 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
+ V+ E LPL + P+ VT + LV+DP EE++M K++ +
Sbjct: 180 -----ISVNKNEVVGKLPL---NYPV-VTISVAKVDKYLVVDPDLDEESIMDAKISFSYT 230
Query: 235 ANGDVCAIQKPG-GEGVLQSV 254
+ + IQK G G LQ +
Sbjct: 231 PDLKIVGIQKSGKGSMSLQDI 251
>gi|401403929|ref|XP_003881608.1| GF22565, related [Neospora caninum Liverpool]
gi|325116021|emb|CBZ51575.1| GF22565, related [Neospora caninum Liverpool]
Length = 552
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 163/346 (47%), Gaps = 73/346 (21%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
VN + + +R+DGR+P +R+L I F R +G +E+ LG+T + VT P+
Sbjct: 7 VNAETLAQALKKQKLRVDGRSPDHFRRLQISFRRSNGHAEIALGRTRCLSQVTAS---PF 63
Query: 73 ----RDRPNEGTLSIFTEFSPMADPSF--------------------ETGRPSESAVELG 108
DR ++G +S SP P+ + + SE EL
Sbjct: 64 ALLPTDRASDGEISFRVALSPSIPPTSAELAGQSALSASLAAADTRRRSTKSSELERELE 123
Query: 109 RIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
R++ R L++S VDTE+LC+ +GK W +R+ + ++++ GNL D A +AAL L+ F++
Sbjct: 124 RMLRRLLKDSGVVDTEALCIQSGKWAWHVRVAVTVVEDDGNLRDTALLAALCGLMHFKKE 183
Query: 169 ECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSE-SLL-------------- 213
+ G+ + + H +REPLPL IHHLPI V+F F + SLL
Sbjct: 184 AVTFDGD---QAVFHRAADREPLPLCIHHLPILVSFAFLPTRGSLLNLSAPKGEGEDEED 240
Query: 214 --------------------------VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
V+DP+ EEA + GK++ + GD+C + K GG
Sbjct: 241 ALPEPYSSQTAGKREDERDDEDDLDYVVDPSALEEATLPGKVSIAVGKQGDICGMYKVGG 300
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAV--ETYNTERALRKIKR 291
+ S +++ LA+ A ++ ++ AV E + +R LR R
Sbjct: 301 PVLRFSHLIKLTNLATAKAKELLSIVQAAVQQERESHQRRLRTNAR 346
>gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis]
gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis]
Length = 276
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 136/262 (51%), Gaps = 8/262 (3%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+ + L IR DGR F++R+ + G +GS+ V+LG T ++ VT + +P D
Sbjct: 13 YYKQFLKENIRPDGRGLFDFRETILNVGSISTANGSALVKLGNTTVVCGVTAEFAEPAAD 72
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
PN+G + + P+ PSF G PSE A L +D + S+ +D E LC++ GKLV
Sbjct: 73 VPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITNSQLIDLEDLCIVDGKLV 132
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W + IDL LD GN+ DAA IA LA+L R ++ E + E + + L
Sbjct: 133 WVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEP----SENKDIHLK 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ +P+AVTFG F + + DPT EE + GK++ + N V A+ KPGG + Q
Sbjct: 189 LKSMPVAVTFGIFDDDHIYC-DPTDEEERLASGKVSVVMTTNNKVVAVHKPGGPPLTQDK 247
Query: 255 IMQCLRLASRMASDITKKIKDA 276
+ +C + + ++ + I A
Sbjct: 248 LQECFDVTTGRVLEVQQLIDAA 269
>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|343485776|dbj|BAJ51430.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
Length = 271
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 135/236 (57%), Gaps = 13/236 (5%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K I L G RID R P +YRK+ I + GS+ V LG+T I+ + ++ PY
Sbjct: 12 KNKIYELLKIGKRIDEREPLQYRKIEIATNVVEKAHGSALVSLGKTKILTGIKVEVGTPY 71
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
DRPNEG ++ E P+A +FE G P E A+EL RIVDR +RES+A++ E LC++ G+
Sbjct: 72 PDRPNEGVFTVNAELLPLASKTFEPGPPDERAIELSRIVDRVIRESKAIEVEKLCIVEGQ 131
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
V+ I ID ++LD GN DA+ ++A+A+L T P + + +E + P E+ LP
Sbjct: 132 KVYMIFIDCYVLDYDGNYFDASVLSAVAALRTMTLPVYRV-VDGRVEAV---PGEKMKLP 187
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK--PG 246
+ LP++VT + +++DP EE V +T +++G + AIQK PG
Sbjct: 188 M--RTLPVSVTMALIRDK--IIVDPLPAEEDVADTVVTIGYDSDGVLSAIQKSSPG 239
>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943801|pdb|4BA1|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943804|pdb|4BA2|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 277
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 144/261 (55%), Gaps = 17/261 (6%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ 57
M + +N + + +K I + GIR DGR +YR LSI + DGS+ V+LG
Sbjct: 3 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT 62
Query: 58 THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
T ++ ++ +PY D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+
Sbjct: 63 TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD 122
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL---TFRRPECSLGG 174
S+A+D L + GK VW + +D+++LD GGN++DA +A++A+L ++ + S G
Sbjct: 123 SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNG- 181
Query: 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
+ V+ E LPL + P+ VT + LV+DP EE++M K++ +
Sbjct: 182 -----ISVNKNEVVGKLPL---NYPV-VTISVAKVDKYLVVDPDLDEESIMDAKISFSYT 232
Query: 235 ANGDVCAIQKPG-GEGVLQSV 254
+ + IQK G G LQ +
Sbjct: 233 PDLKIVGIQKSGKGSMSLQDI 253
>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 283
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 8/228 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+ G+RID R +YR+LSI+ G DGSS V LG T +M V ++ +P+ D P+EG
Sbjct: 23 IEQGVRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGNTKVMAGVKVEVGKPFEDTPDEG 82
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + E +P A P E G P E+A+E+ R+VDR +R S ++ +SL ++ G+ W + +
Sbjct: 83 ALIVNLEIAPAASPDIEPGPPDENAIEIARVVDRAIRHSGFLNFKSLSIVTGRHAWFLWV 142
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+++L++ GNLVDA+ IAA+ +L+ P+ L ++ I + PL L + LP
Sbjct: 143 DIYVLNHDGNLVDASTIAAITALMNTALPKVELDPAGNILRIDR--SNKSPLALNVDKLP 200
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ +T + L++DPT EE + G + A G+V AIQK G
Sbjct: 201 LTITHAKLG--NFLLVDPTREEEDLSDGIYITGI-AGGNVVAIQKVTG 245
>gi|374325947|ref|YP_005084147.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
gi|356641216|gb|AET31895.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
Length = 273
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 10/232 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L++ RIDGR P + R + IK G DGS+EV+LG+TH++ V L QP+ D
Sbjct: 20 IRKLLAAKYRIDGRGPDQMRDVEIKTGVVKTADGSAEVRLGKTHVVAGVKVGLGQPFPDA 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+EG L + E P A P E G P ESA+EL R+VDRG+R VD + L V GK +
Sbjct: 80 PDEGVLVVNAEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLVVEGGK-AY 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ IDL+++++ GNLVDAAN+A++A+L + P +D+ + + PLP+ +
Sbjct: 139 ILWIDLYVINDDGNLVDAANLASVAALKNTQLPTAV---KDEAGAVKLDRNNKLPLPVDV 195
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
P+A + G ++L +DPT EE + G++T T + + + A QK G
Sbjct: 196 AKAPVAASVGKIG--NVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTLG 244
>gi|294873385|ref|XP_002766601.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239867633|gb|EEQ99318.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 418
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 21/243 (8%)
Query: 49 GSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPS-FETGRPS------ 101
G +E +G+T I VTGQL P +RP EG LSI E PMA P+ +G S
Sbjct: 25 GQAECSIGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSGNSSGLVGSA 84
Query: 102 --ESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAAL 159
+ L ++R L+ S AVD E+LC+ +G LVW +R+D+H+L + GN+ DAA IA+
Sbjct: 85 QTPEGISLCNQLERMLKGSNAVDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAIAST 144
Query: 160 ASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSE----SLLVI 215
+L +RR E S+ + E+I P + +P+PL +HH+PI VTF S LL+
Sbjct: 145 VALRHYRRAEVSVV---NGEIIYKP--DLDPIPLSVHHMPIPVTFASIPSSLGENPLLLA 199
Query: 216 DPTHHEEAVM--VGKMTATLNANGDVCAIQKPGGEGV-LQSVIMQCLRLASRMASDITKK 272
DP+ EE++ G++ +N G++C K GG + L +M +RLA+ ++T
Sbjct: 200 DPSSLEESLQGDGGQLVVVMNQYGELCGALKSGGASLMLHRDLMPAIRLATARVKEVTAL 259
Query: 273 IKD 275
I +
Sbjct: 260 IDE 262
>gi|407464320|ref|YP_006775202.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
gi|407047508|gb|AFS82260.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
Length = 272
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 141/257 (54%), Gaps = 11/257 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G R+DGR E R++ I+ + +GS+ V LG T ++ V Q +P+ D ++G
Sbjct: 19 LEQGKRVDGRALDEAREIKIETNAIPKANGSARVFLGDTEVICGVKIQPDRPFPDTGDKG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
E P++ P+ ETG P +EL R+VDRG+RES VD L + K V +
Sbjct: 79 LFICTAELLPLSHPTVETGPPQPPVIELARVVDRGIRESHMVDVSQLVIEKDKSVIGVFA 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D ++D GNL DA + AA A+LLT + P+ + DD V+ E E PL I +P
Sbjct: 139 DNVVVDYDGNLFDACSYAATAALLTTKTPKWNW--TDDSPVLA----EGEDRPLPITTIP 192
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
++VT G + +V+DP E M ++T T +++G++CA+QK G +G Q I QC
Sbjct: 193 VSVTMGKIG--NYIVVDPNGDEWESMDARVTITTDSDGNICALQKGGSDGFTQDEINQCG 250
Query: 260 RLASRMASDITKKIKDA 276
++ R+ + I +K+K A
Sbjct: 251 EISVRIGAKIREKLKAA 267
>gi|386876626|ref|ZP_10118725.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
gi|386805588|gb|EIJ65108.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
Length = 272
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 148/265 (55%), Gaps = 11/265 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I L G R+DGR E R++SI+ + +GS+ V+LG+T ++ V Q +P
Sbjct: 11 KKSQILELLEQGKRVDGRALDEPREISIETNAIPKANGSARVRLGETEVICGVKIQPDRP 70
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D ++G E P++ P+ ETG P +EL R+VDRG+RES +D L +
Sbjct: 71 FPDMGDKGIFICTAELLPLSHPTVETGPPGPDVIELARVVDRGIRESHMIDVSQLVIEPN 130
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K V + D ++D GNL DA + AA A+LL+ + P+ + DD +V E E +
Sbjct: 131 KSVVGVFADNVVVDYDGNLFDACSYAATAALLSSKSPKWNW--VDDAPTLV----EGEDM 184
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P+ I +P++VT G S +++DP E A M ++T T ++NG++CA+QK G +G
Sbjct: 185 PVPIATIPVSVTMGKIGSH--IIVDPNGDEWASMDARITITSDSNGNICALQKGGSDGFT 242
Query: 252 QSVIMQCLRLASRMASDITKKIKDA 276
I +C ++ ++ + I +K+K A
Sbjct: 243 LEEINRCGDISVKVGATIREKLKAA 267
>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
9790]
gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 260
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 142/263 (53%), Gaps = 23/263 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ I ++ G R+DGR ++R + I + GS+ V+LG+T ++ V + +P
Sbjct: 13 KRDMILNSIKRGKRLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEP 72
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P++G +++ E PMA P+FE G P E A+E R+VDRG+RES+ +D L + G
Sbjct: 73 FPDTPDQGVMALNIEMLPMAFPTFEAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPG 132
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
VW + ID+ I++ GN++DA+ IAA+A+L P +GGED
Sbjct: 133 TKVWMVFIDIDIINYAGNIIDASTIAAVAALRNAIVPASRIGGED--------------F 178
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
L ++ P++VT E LVIDP EE V G++T T+ + + AIQK G +
Sbjct: 179 KLPVNANPVSVTMAKIGDE--LVIDPDLEEEQVSNGRITITMAEDDHIHAIQK----GDV 232
Query: 252 QSVIMQCLRLASRMASDITKKIK 274
M+ +R A + + D +I+
Sbjct: 233 GEFTMEDIRKAIKASRDTGNRIR 255
>gi|71416323|ref|XP_810197.1| ribosomal RNA processing protein 45 [Trypanosoma cruzi strain CL
Brener]
gi|70874694|gb|EAN88346.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi]
Length = 334
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 154/300 (51%), Gaps = 29/300 (9%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++++ F S V+ G T + + +LV
Sbjct: 16 LTQREVEFTKSAWIAGLRPDQRGAQQLREVNVDFPLLSRDVSCVRCGGTIVTAAIACELV 75
Query: 70 QPYRDRPNEGTLSIFTEFSPMA--DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+P+ RP G + F+ P D S +T + L R++ G VDTE LC
Sbjct: 76 EPFPYRPKHGIID-FSVRQPYTERDSSAKTAELKKLTAFLERLIKGG----GVVDTEGLC 130
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
VL G+ VW+I +D+ +L++ GN+ D A A +A LL +RRPE ++ G+ VI+HP E
Sbjct: 131 VLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRPELTIRGDS---VILHPTHE 187
Query: 188 REPLPLIIHHLPIAVTFGFF---------------SSESL-LVIDPTHHEEAVMVGKMTA 231
R+P+PL IHH P++ +F S E+L +V+DPT E +
Sbjct: 188 RDPVPLSIHHTPLSFSFAITMAPGDRNRLARGRRDSQEALEVVVDPTFAEATAASSSVVV 247
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER--ALRKI 289
+NA G VC++ K G + + C+ AS +A I I+DA+ ++ R AL+++
Sbjct: 248 AVNAEGQVCSVSKSEGSCIHLDEVNHCMETASLLAPHILSLIRDAMAAHDKRRQEALKRM 307
>gi|71655894|ref|XP_816503.1| ribosomal RNA processing protein 45 [Trypanosoma cruzi strain CL
Brener]
gi|70881635|gb|EAN94652.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi]
Length = 334
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 150/293 (51%), Gaps = 27/293 (9%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++++ F S V+ G T + + +LV
Sbjct: 16 LTQREVEFTKSAWIAGLRPDQRGAQQLREVNVDFPLLSRDVSCVRCGGTIVTAAIACELV 75
Query: 70 QPYRDRPNEGTLSIFTEFSPMA--DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+P+ RP G + F+ P D S +T + L R++ G VDTE LC
Sbjct: 76 EPFPCRPKHGIID-FSVRQPYTERDSSAKTAELKKLTAFLERLIKGG----GVVDTEGLC 130
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
VL G+ VW+I +D+ +L++ GN+ D A A +A LL +RRPE ++ G+ VI+HP E
Sbjct: 131 VLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRPELTIRGDS---VILHPTHE 187
Query: 188 REPLPLIIHHLPIAVTFGFF---------------SSESL-LVIDPTHHEEAVMVGKMTA 231
R+P+PL IHH P++ +F S E+L +V+DPT E +
Sbjct: 188 RDPVPLSIHHTPLSFSFAITMAPGDRNKLARGRRDSQEALEVVVDPTFAEATAASSSVVV 247
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
+NA G VC++ K G + + + C+ AS +A I I+DA+ ++ R
Sbjct: 248 AVNAEGQVCSVSKSEGSCIHLNEVNHCMETASLLAPHILSLIRDAMAAHDKRR 300
>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
SCM1]
gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
Length = 272
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 145/257 (56%), Gaps = 11/257 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G R+DGR E R++SI+ + +GS+ V+LG T ++ V Q +P+ D ++G
Sbjct: 19 LEQGKRVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGVKIQPDRPFPDTGDKG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
E P++ P+ ETG P +EL R+VDRG+RES +D L + K V +
Sbjct: 79 LFICTAELLPLSHPTVETGPPGPEVIELARVVDRGIRESHMIDVSQLVIEKDKSVIGVFA 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D ++D GNL DA + AA A+LL+ + P+ + DD +V E E + + I +P
Sbjct: 139 DNVVVDYDGNLFDACSYAATAALLSSKSPKWNW--VDDAPALV----EGEEVDVPITTIP 192
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
++VT G + +++DP E A M ++T T +++G++CA+QK G +G Q I+QC
Sbjct: 193 VSVTMGKIGNH--IIVDPNGDEWASMDARITITSDSDGNICALQKGGDDGFTQDEIVQCG 250
Query: 260 RLASRMASDITKKIKDA 276
++ R+ + I +K+K A
Sbjct: 251 EISVRVGAKIREKLKAA 267
>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
Length = 263
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 141/258 (54%), Gaps = 12/258 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
++ I ++ G R DGR E R + I+ + +GS+ V+LG T ++ V + +P+
Sbjct: 9 RKSITRLINDGKRADGRAFDERRDIFIEPNVIDKAEGSARVKLGDTQVIVGVKPTIGEPF 68
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G L E PMA P FE G PS ++EL R+VDRG+RES VD E LC+ GK
Sbjct: 69 ADTPNLGVLMTNCELLPMAAPGFEPGPPSPESIELARVVDRGIRESELVDLEKLCIEEGK 128
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW + IDLH++D GNL D AN+A +++LL + P ++ +V +E LP
Sbjct: 129 KVWMLFIDLHVIDYDGNLFDCANLAVMSALLNTKLPVAEYIDDE----VVLSEDETMDLP 184
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD-VCAIQKPGGEGVL 251
+ L ++ F + L++DP+ EE ++ ++T + G+ +C++QK G E +
Sbjct: 185 -VRDKLALST---FVKIGNGLILDPSLEEEEILDARITIGVTDEGNHICSMQKGGEEPLT 240
Query: 252 QSVIMQCLRLASRMASDI 269
+ I+ + LA D+
Sbjct: 241 RDDILDAVHLAFETKDDL 258
>gi|429216659|ref|YP_007174649.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
gi|429133188|gb|AFZ70200.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
Length = 284
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 143/255 (56%), Gaps = 9/255 (3%)
Query: 26 GIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLS 82
G R D R+ + RK+SI+ + +GS+ V+LG T ++ + + +P+ D P+EG L
Sbjct: 26 GQRADERDFYSPRKISIQTNVLEKANGSALVKLGNTQVLAGIKIEPGEPFADMPDEGVLQ 85
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
+ E P+A P FE G P E+A+EL R++DR LR+ +AVD +SL + G VW + +DL+
Sbjct: 86 VHAELVPLASPQFEPGPPDENAIELARVIDRSLRDPKAVDLKSLVIRPGDKVWMLWLDLY 145
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAV 202
ILD GNL DA+ +A++A+L T R PE ++++ + +P+ ++ + V
Sbjct: 146 ILDYDGNLFDASMLASMAALSTARMPEFEEMETGEIKLT----NKISDIPIKLNKRIVTV 201
Query: 203 TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLA 262
T E+ +++DP EE + + + + NG++ +QK G V Q + + ++
Sbjct: 202 TTA--KIENYIIVDPNLDEEIISDTRSVISFDENGNIVGVQKTGMGSVSQEELDNIVNIS 259
Query: 263 SRMASDITKKIKDAV 277
S+ A K + +A+
Sbjct: 260 SQAAQVYFKLLNNAL 274
>gi|389584408|dbj|GAB67140.1| exosome complex exonuclease [Plasmodium cynomolgi strain B]
Length = 505
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 138/265 (52%), Gaps = 20/265 (7%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
N F L +R+DGRN + R +SI F E G+ EV +G T ++ +T ++V+P+
Sbjct: 6 NNANFFWCNLKKKLRLDGRNFEDSRNISIYFLGEHGNVEVSIGHTKVICKITSEIVKPFD 65
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
RP EG + + + + + + + S+ +E+ +++R L+
Sbjct: 66 KRPCEGMIKVNLDIDSFTNVN-DNSQISDECLEIKNLIERILKS---------------- 108
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
+W + + + +++N GNL D+ ++A ++L+ +R E ++ + I+ E PL
Sbjct: 109 IWCLLVSIIVIENDGNLYDSCYLSAYSALVHYRNNEVTVDSSGN---IIIEEGETNYTPL 165
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
IH+ PI TF +F+ E + +IDP+ EE M K++ LN NG + +I KPGG +
Sbjct: 166 SIHNTPILTTFAYFNCEDICLIDPSIQEEEFMSSKLSVALNKNGKLVSILKPGGSPISYE 225
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
I++ + LA + I K ++DA+E
Sbjct: 226 KILEAIELAKKRVKSILKILEDALE 250
>gi|302348935|ref|YP_003816573.1| exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15]
gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
345-15]
Length = 280
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 141/254 (55%), Gaps = 13/254 (5%)
Query: 26 GIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLS 82
G+R D R+ R LSI+ G + DGS+ V+LG T ++ V ++ PYRD PNEG L
Sbjct: 26 GVRSDQRDFATPRNLSIQVGVIDKADGSAWVKLGNTQVLVGVKLEVGIPYRDTPNEGVLQ 85
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
+ +E +P+A P+FE G P E+AVEL R++DR LR+ +A+D SL + G+ W + ID++
Sbjct: 86 VNSELTPVASPTFEPGPPDENAVELSRVIDRSLRDPKAIDLSSLVIRPGEKAWVLWIDIY 145
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIH-HLPIA 201
+LD GN DA+ + +A+L+ + PE E + I+ E+ PL L L +
Sbjct: 146 VLDYDGNYFDASMLGVMAALMNTKVPEYE---ETESGEIIINREKGTPLKLNRRVALVTS 202
Query: 202 VTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRL 261
V G + ++IDP EE + +M + G + +QK G G + +++ + +
Sbjct: 203 VKVGDY-----ILIDPNIDEELLADSRMVIAFDEQGTIVGMQKSGMGGYTRDELLKVIDI 257
Query: 262 ASRMASDITKKIKD 275
SR AS + K+ D
Sbjct: 258 -SRNASQVYFKLLD 270
>gi|289740849|gb|ADD19172.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 320
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 117/189 (61%), Gaps = 3/189 (1%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MA FE GR E V++ R ++R ++SRA+D ESLCV++ + VW +R+DL++L++ GN
Sbjct: 1 MAASHFEAGRNCELTVQINRTLERTFKDSRAIDLESLCVISDERVWMLRVDLNVLNHEGN 60
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
L+D ++A L +L FRRP+ S+ ED E+ +H E+EPL +++HH P+ V++ F
Sbjct: 61 LIDCCSVATLCALAHFRRPDVSV-IED--EIRIHTSAEKEPLKMVMHHYPVCVSYVVFDG 117
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+ + DPT EE +M +N+ G++C + G ++++QC + A++ A +
Sbjct: 118 GRIAIADPTVAEERTSDTQMIFGINSFGELCCLNLGGSSLTSPTLLLQCSKKAAKHAKSV 177
Query: 270 TKKIKDAVE 278
++K ++E
Sbjct: 178 VNQVKKSLE 186
>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.N.15.51]
gi|259645406|sp|C3NHC2.1|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
Length = 275
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
Length = 259
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 147/264 (55%), Gaps = 18/264 (6%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
K ++ + L G RIDGR E R + IK G + +GS+ V+LG T ++ V Q+ +P+
Sbjct: 11 KDYVLSKLRDGERIDGRAFDEIRPIEIKTGLIKKAEGSAYVKLGNTQVVAGVKMQIGEPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G + E P+A P+FE G P E+A+EL R+VDRG+R S AVD + LC+ G+
Sbjct: 71 PDTPDQGIIITNAELVPLASPTFEPGPPDENAIELARVVDRGIRHSEAVDLKKLCIEEGE 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW I ID+ LD+ GNL+DA+ +AA+A+LL P DD PLP
Sbjct: 131 KVWIIFIDIWALDDDGNLMDASALAAIAALLNTTVPAERFEVGDDF-----------PLP 179
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ LP+A+T + + +++DP E +V +T T + N ++ +IQK G + +
Sbjct: 180 --VRDLPVAITSLVYDDK--ILVDPCRDELSVGKNTITITTDQNDNIVSIQKSGPFLLSE 235
Query: 253 SVIMQCLRLASRMASDITKKIKDA 276
+ L ++ R A ++ K + D
Sbjct: 236 KAFEEVLEVSIRKAREVRKLLADV 259
>gi|332023404|gb|EGI63647.1| Exosome complex exonuclease RRP43 [Acromyrmex echinatior]
Length = 278
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 139/275 (50%), Gaps = 8/275 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
T++ ++++ L +R DGR +R +S+ + D S+ +LG T + + +L
Sbjct: 3 TIHPVKYLQDHLEQNVRTDGRKFLSFRPVSVNVSSIVQADSSAIFKLGDTTAVCGIKAEL 62
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + E SP+ F G PSE A L + +D L S A+D + LC+
Sbjct: 63 AAPKADTPDHGYIVPNVELSPLCSSKFRPGPPSEQAQVLSKFIDIILSNSAALDLKDLCI 122
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
KLVW + D+ L+ G+++DA A +A+L T PE + E L IV+P +
Sbjct: 123 CKSKLVWVLYCDILCLNYNGSVIDACTGALMAALKTLTLPEVNYTKETAL-TIVNPKNRK 181
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ I+ LPI+ +F F + LLV DPT EE + GK + ++ +C + KPGG
Sbjct: 182 K---FIVRTLPISTSFAVF-EKRLLVADPTDDEEDLSSGKFSIVMDDEEKICYVHKPGGI 237
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ Q+++ + L +A A + I A+ T N +
Sbjct: 238 PISQNLLSKGLEMAKTRAKLVRSVINAAISTLNVK 272
>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
L.S.2.15]
gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.G.57.14]
gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.4]
gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
gi|259645403|sp|C4KHE3.1|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
gi|259645404|sp|C3MQ47.1|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
gi|259645407|sp|C3NED0.1|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
Length = 275
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>gi|379003147|ref|YP_005258819.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
gi|375158600|gb|AFA38212.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
Length = 276
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 10/223 (4%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R+DGR + R++ IK G DGS+EV+LG+TH++ V L QP+ D P+EG L +
Sbjct: 29 RVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQPFPDAPDEGVLVVS 88
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E P A P E G P ESA+EL R+VDRG+R VD + L V GK + + +DL+I+
Sbjct: 89 AEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGK-AYVLWVDLYII 147
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
++ GNLVDAAN+A++A+L + P +D+ + + PLPL +P+AV+
Sbjct: 148 NDDGNLVDAANLASVAALKNTQLPAVV---KDESGAVKLDRNNKSPLPLETSKVPVAVSV 204
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
G + ++L +DP EE + G++T T++ + + A QK G
Sbjct: 205 GKIA--NVLFLDPNFEEELSLDGRVTFTISED-RIVAAQKTLG 244
>gi|385773350|ref|YP_005645916.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
gi|385775988|ref|YP_005648556.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
Length = 275
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKIDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>gi|407859308|gb|EKG06987.1| ribosomal RNA processing protein 45 [Trypanosoma cruzi]
Length = 334
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 154/300 (51%), Gaps = 29/300 (9%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++++ F S V+ G T + + +LV
Sbjct: 16 LTQREVEFTKSAWIAGLRPDQRGAQQLREVNVDFPLLSRDVSCVRCGGTIVTAAIACELV 75
Query: 70 QPYRDRPNEGTLSIFTEFSPMA--DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+P+ RP G + F+ P D S +T + L R++ G VDTE LC
Sbjct: 76 EPFPYRPKHGIID-FSVRQPYTERDSSAKTAELKKLTAFLERLIKGG----GVVDTEGLC 130
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
VL G+ VW+I +D+ +L++ GN+ D A A +A LL +RRPE ++ G+ VI+HP E
Sbjct: 131 VLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRPELTIRGDS---VILHPTHE 187
Query: 188 REPLPLIIHHLPIAVTFGFF---------------SSESL-LVIDPTHHEEAVMVGKMTA 231
R+P+PL IHH P++ +F S E+L +V+DPT E +
Sbjct: 188 RDPVPLSIHHTPLSFSFAITMAPGDRNKLARGRRDSQEALEVVVDPTFAEATAASSSVVV 247
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER--ALRKI 289
+NA G VC++ K G + + + C+ A +A I I+DA+ ++ R AL+++
Sbjct: 248 AVNAEGQVCSVSKSEGSCIHLNEVNHCMETAFLLAPHILSLIRDAMAAHDKRRQEALKRM 307
>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
DSM 13514]
gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
13514]
Length = 276
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 10/223 (4%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R+DGR + R++ IK G DGS+EV+LG+TH++ V L QP+ D P+EG L +
Sbjct: 29 RVDGRALDQTREIEIKTGVVKTADGSAEVKLGKTHVIAGVKVGLGQPFPDAPDEGVLVVS 88
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E P A P E G P ESA+EL R+VDRG+R VD + L V GK + + +DL+++
Sbjct: 89 AEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGK-AYVLWVDLYVI 147
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
++ GNLVDAAN+A++A+L + P +D+ + + PLPL +P+AV+
Sbjct: 148 NDDGNLVDAANLASVAALKNTQLPAVV---KDESGAVKLDRNNKSPLPLETSKVPVAVSV 204
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
G + ++L +DP EE + G++T T++ + + A QK G
Sbjct: 205 GKIA--NVLFLDPNFEEELSLDGRVTFTISED-RIVAAQKTLG 244
>gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis
KIN4/I]
gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis
KIN4/I]
Length = 276
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 10/224 (4%)
Query: 26 GIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLS 82
G RID R +YR + I G + GS+ V++G T ++ V ++ +P++D P+ G L+
Sbjct: 26 GTRIDKRRLDQYRPIKITLGVGGKAHGSALVEIGNTKVLAGVKVEVGKPFKDVPDAGVLN 85
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
+ E P+A FE G P E+A+EL R++DR LRE +D + L ++ G+ V + +D++
Sbjct: 86 VNAELLPLASSEFEPGPPDENAIELARVIDRALREPGVIDLKELVLIPGEKVLVVWLDVY 145
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAV 202
+LD+ GNL DA+ +A++A+LL R PE + + +EV +E PL I + ++V
Sbjct: 146 VLDHDGNLFDASMLASMAALLDTRYPEYVVREDGSVEV-----DEANKRPLPIANKVVSV 200
Query: 203 TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
T E+L ++DPT EE V GK+ + G + +QK G
Sbjct: 201 TLNVL--ENLFMVDPTLEEEVVADGKIVFAFDERGRLVGLQKSG 242
>gi|410671928|ref|YP_006924299.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
gi|409171056|gb|AFV24931.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
Length = 255
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 142/264 (53%), Gaps = 18/264 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
++V +K +I + G R+D R+ + R ++++ + +GS+ V+ G+T ++ V Q
Sbjct: 1 MSVLKKDYIYNLMLKGKRVDDRSFDQVRDIALETNVIDKAEGSAWVKYGETEVLVGVKVQ 60
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
P+ D EG + E +P+A P FE G P E A+E+ R+ DRG+RES A+D LC
Sbjct: 61 AGAPFPDSAGEGVIITSLELNPLASPEFEAGPPKEGAIEMARVTDRGIRESGAIDLSKLC 120
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
+ G+ VW I ID+H+L++ GN+ DA+++ A+A+L+T P G +D+
Sbjct: 121 ITKGEEVWIIFIDIHVLNDAGNIQDASSLGAIAALMTTTIPAERNGKGEDM--------- 171
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+P+ P+A+T L++DP EE V K+T N +G + +QK G
Sbjct: 172 --AMPM--RDTPLAITLVNIGGS--LMVDPGRDEETVCDTKITIVSNQDGSISGMQKSGD 225
Query: 248 EGVLQSVIMQCLRLASRMASDITK 271
+ + ++ + +A A+++ K
Sbjct: 226 GALTEEQALKAVEMACEKAAELRK 249
>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.14.25]
gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.27]
gi|259645402|sp|C3N5R4.1|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
gi|259645405|sp|C3MVG5.1|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
Length = 275
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>gi|255725482|ref|XP_002547670.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
gi|240135561|gb|EER35115.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
Length = 299
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 152/290 (52%), Gaps = 32/290 (11%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFG-REDGSSEVQLGQTHIMGFVTGQLVQPY 72
N+K ++ AL + IR+ R E R + IK + G E+ G T ++ ++ ++++PY
Sbjct: 8 NQKNYLFEALKNNIRLSNRKFDELRSIDIKLSDSKYGYVELTWGSTKLIVNISARIIEPY 67
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVE---LGRIVDRGLRESRAVDTESLCVL 129
+DRP EG +I E P+ SE ++ L R +++ +R S ++D E+LC++
Sbjct: 68 KDRPFEGIFTINCEL-----PN---NLKSEEIIDENLLSRTLEKSIRRSNSLDLENLCII 119
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL---GGEDDLEVIVHPPE 186
AG+ VW I IDL+ L+ GNL+D+ +A + LL F++ + S+ GG + + +
Sbjct: 120 AGEKVWEIIIDLNYLNYDGNLIDSGCLAIMIGLLDFKKNDISVTSNGG-----IKIFDLD 174
Query: 187 EREPLPLIIHHLPIAVTFGFFSSES------------LLVIDPTHHEEAVMVGKMTATLN 234
ER+P+ L I H+PI +TF FF+ S + ++D EE G +T TLN
Sbjct: 175 ERQPIELSILHIPICLTFSFFNLGSKEMNLKSDEINEIYLLDADSLEEYCRDGFLTITLN 234
Query: 235 ANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
N D+ + K GG + ++Q + + +T IK V+T+ +R
Sbjct: 235 QNRDLIQLNKNGGLPIDAQQLLQLCHNSMEIIDKLTNLIKTTVKTHQEKR 284
>gi|428672169|gb|EKX73083.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
equi]
Length = 305
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 11/301 (3%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
+ R ++T L + E+ AL +GIRIDGR YR ++I+F GS + G T +
Sbjct: 12 VQNRFSDTSTLLIGER-----ALLNGIRIDGRQLDSYRNINIEFIGPPGSVIISFGNTTV 66
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
V ++V+P +RPNEG L E P+ +E G+ SE + ++ +ES +
Sbjct: 67 FSSVCAEVVEPNSERPNEGFLFFNAELMPLTSGLYEPGKASELEQNISCFIESVFKESGS 126
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
++ ESLC+ +GK VWAIR+ +H+L + GNL D + +ALASLL +R E + D V
Sbjct: 127 LNLESLCITSGKHVWAIRVYIHVLQDDGNLFDVCSFSALASLLHYRIQEVKVV---DDTV 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
+ + PL I+++PI + + E LV DPT EE + ++ N G+V
Sbjct: 184 KISEINWHKGTPLNIYNIPIPINILILTEERFLV-DPTIFEEQINSTQIFLVFNQFGEVI 242
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYN--TERALRKIKRHPTSITL 298
+QKPGG V+ +I + + R + ++ + + + L+ + +H ++ +
Sbjct: 243 WVQKPGGIPVMLDIIKTAIEIGERKTKQLYSLLRKELASNEEMNKNVLKYVNKHYSTPVI 302
Query: 299 D 299
D
Sbjct: 303 D 303
>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
Length = 270
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 139/267 (52%), Gaps = 24/267 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
++++I S G R+DGR+ E R L++ G R +GS+ V LG T ++ V + P
Sbjct: 15 QRKYIHKLASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D PN G L+ E +P+A P+FE G P E A+EL R+VDRG+RE A+D E L + G
Sbjct: 75 FPDTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+H+LD GNL DAA ALA+L P GED
Sbjct: 135 EKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGED-------------- 180
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L + H P+ VTF +V DP EE++ ++T N G + A+QK G+
Sbjct: 181 FKLPVQHYPVPVTFAKIG--DWIVADPNLDEESIASARLTVATNEEGKINAMQK----GL 234
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
+ + ++ M+ +I K+++ +
Sbjct: 235 SGTFTYEEVKKVINMSMNIGGKVREII 261
>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 270
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 139/267 (52%), Gaps = 24/267 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
++++I S G R+DGR+ E R L++ G R +GS+ V LG T ++ V + P
Sbjct: 15 QRKYIHKLASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D PN G L+ E +P+A P+FE G P E A+EL R+VDRG+RE A+D E L + G
Sbjct: 75 FPDTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+H+LD GNL DAA ALA+L P GED
Sbjct: 135 EKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGED-------------- 180
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L + H P+ VTF +V DP EE++ ++T N G + A+QK G+
Sbjct: 181 FKLPVQHYPVPVTFAKIG--DWIVADPNLDEESIASARLTVATNEEGKINAMQK----GL 234
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
+ + ++ M+ +I K+++ +
Sbjct: 235 SGTFTYEEVKKVINMSMNIGGKVREII 261
>gi|340053933|emb|CCC48226.1| exosome complex exonuclease [Trypanosoma vivax Y486]
Length = 346
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 146/311 (46%), Gaps = 45/311 (14%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
L+ E F +++ G+R D R + R + ++F V+ G T I G + LV
Sbjct: 16 LSQREVEFTKSSWLVGLRPDQRTAQQLRDVVVEFPLVTRDVVVVRCGGTVISGAIASNLV 75
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAV-----ELGRIVDRGLRESRAVDTE 124
+P RP G L +T R S +A +L +DR +R +DT
Sbjct: 76 EPMPQRPKHGLLHFSVRL-------LQTERESPTATALTQTKLAAFLDRLIRTGGVLDTA 128
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
+LCVL G+ VW+I ID+ +L++ GN DA AA+A LL RRPE ++ G + VHP
Sbjct: 129 ALCVLPGERVWSITIDVTVLNDEGNSSDAVVWAAIALLLHHRRPELTIRGNS---ITVHP 185
Query: 185 PEEREPLPLIIHHLPIAVTFGF----------------------------FSSESL-LVI 215
P EREP+PL +HH P+ TF S++L +V+
Sbjct: 186 PHEREPVPLSVHHTPLPFTFAVTMSLEEYERTRRSITASHQHVHSAGGNSMPSQALCVVV 245
Query: 216 DPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKD 275
DPT E + +NA G VCA+ K G V + + QC+ +AS +A + I
Sbjct: 246 DPTTSEALAAASTIVVAINAEGQVCALSKSEGCCVQVAELNQCIEIASILAPRVLGIIHA 305
Query: 276 AVETYNTERAL 286
A+E ++ +R +
Sbjct: 306 AMEAHDGKRQM 316
>gi|449512119|ref|XP_004175654.1| PREDICTED: exosome complex component RRP45-like, partial
[Taeniopygia guttata]
Length = 379
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 3/151 (1%)
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW IR+D+H+L++ GN+ DAA+IA + +L FRRP+ S+ GE EV V+ PEER+P+PL
Sbjct: 94 VWQIRLDMHLLNHDGNITDAASIAGIVALCHFRRPDVSVQGE---EVTVYTPEERDPVPL 150
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
IHH+PI V+F FF + L++DPT EE VM G + +N + ++C IQ G +L
Sbjct: 151 SIHHMPICVSFAFFHQGTYLLVDPTEREERVMDGLLVIAMNKHHEICTIQSSGVVMLLPD 210
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTER 284
I++C ++ + ++IT+ I+ A+E R
Sbjct: 211 QILRCSKITAVKVAEITELIQKALENDQKAR 241
>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
Length = 257
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 147/267 (55%), Gaps = 24/267 (8%)
Query: 13 VNEKR--FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
VN+ R ++ + +G R DGR EYR++S++ R +GS+ V++G T ++ V +
Sbjct: 6 VNDVRTDYVCDLVKNGKREDGRGFREYREISVERDVIKRAEGSARVKIGDTEVLVGVKVE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L P+ D P++G + E P+A P FE+G P+E++++L R+VDRG+R S +D + LC
Sbjct: 66 LGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRGIRGSETIDLDKLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLEVIVHPP 185
+ G+ VW + ID+H+LD+ GNL DAA + A+ASLL R P L GE+
Sbjct: 126 IEKGEKVWMVFIDIHVLDDNGNLADAAALGAIASLLNLRIPNERYGLTGEN--------- 176
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
LP+ P+AVT E +++DP+ E +T NA+G + +QK
Sbjct: 177 ----TLPM--RDTPVAVT--TVEIEGNILVDPSFDEGNAAASSVTVISNADGTLSGMQKS 228
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKK 272
G G+ ++ I + + + A +I K
Sbjct: 229 GSGGLKEAQIAEMVEIGIEKAGEIRGK 255
>gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1]
gi|29337018|sp|Q9YC05.1|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2
gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1]
Length = 276
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 128/230 (55%), Gaps = 15/230 (6%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G R R+ R + I+ G + +GS+ V+LG+T ++ V + P++D PN+G
Sbjct: 23 LRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQG 82
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L++ EF P+A P FE G P E+A+EL R+VDR LRE AVD ESL + G+ VW + +
Sbjct: 83 VLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWV 142
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRP---ECSLGGEDDLEVIVHPPEEREPLPLIIH 196
DL+I+D+ GNL DA+ +A +A LLT R P E G E+I+ E E L +
Sbjct: 143 DLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETG-----EIIISKEGEGEELKVKTR 197
Query: 197 HLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ + + +V+DP EEAV ++ ++ NG + +QK G
Sbjct: 198 VVTVTTA----KIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTG 243
>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
maquilingensis IC-167]
gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
Length = 279
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 133/230 (57%), Gaps = 12/230 (5%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+S G R D R R L+I+ G DGS+ V LG T ++ + +L +P+ D PNEG
Sbjct: 21 ISEGKRPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGIKFELGKPFEDTPNEG 80
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + E P+A P+FE G P E+A+E+ RI+DR LR S + L ++ GK V+++ +
Sbjct: 81 NLIVNLETPPLAAPTFEPGPPDENAIEIARIIDRALRHSNYIPLRDLVIIPGKSVYSMWV 140
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+++L++ GNL+D++ +AA++++ + P + GE+ + + PL + ++P
Sbjct: 141 DIYVLNHDGNLIDSSMLAAVSAIANAQVPRAIIDGEN----VKLDKSTKIPLNINPQNMP 196
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+ VT ++ + L++DPT EE + G+ T + ++ A+QK GEG
Sbjct: 197 LTVT--YYKIDKYLIVDPTLEEEVMSDGRFTVASDGE-NIVALQK--GEG 241
>gi|407461958|ref|YP_006773275.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045580|gb|AFS80333.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
Length = 272
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 139/257 (54%), Gaps = 11/257 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G R+DGR E R +SI+ + +GS+ V+LG T ++ V Q +P+ D ++G
Sbjct: 19 LEQGKRVDGRALDEVRDISIETNAIPKANGSARVRLGDTEVVCGVKIQPDRPFPDTGDKG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
E P++ P+ ETG P +EL R+VDRG+RES VD L + K V +
Sbjct: 79 LFICTAELLPLSHPTVETGPPGPEVIELARVVDRGIRESHMVDVSQLVIEKDKSVIGVFA 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D ++D GNL DA + A A+LL+ + P+ + +D +V + + P I +P
Sbjct: 139 DNVVVDYDGNLFDACSYATTAALLSSKSPKWNW--VNDAPALVEGEDTQVP----ITTIP 192
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
++VT +++DP E M ++T T +++G++CA+QK G +G Q I+QC
Sbjct: 193 VSVTMAKIGKH--IIVDPNGDEWESMDARITITSDSDGNICALQKGGDDGFTQEEIVQCG 250
Query: 260 RLASRMASDITKKIKDA 276
++ R+ + I +K+K A
Sbjct: 251 EISVRVGAKIREKLKAA 267
>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
str. Fusaro]
gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 150/267 (56%), Gaps = 20/267 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + G R DGR ++R + ++ + +GS++V LG T ++ V Q P
Sbjct: 9 KKDYIYNLMIKGKRQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVGVKLQPGTP 68
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D +EG + E +P+A P FE G P E A+E+ R+VDRG+RES A+D + LC+ G
Sbjct: 69 FPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCISVG 128
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW ID+H+L++ GN++DA+++AA+A+L+T P G G D
Sbjct: 129 ESVWIAYIDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGAD-------------- 174
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL + +P+ VT S+ L++DP+ E AV K+T +++G V +QK G
Sbjct: 175 VPLAMKEMPVGVTLAKIGSK--LMVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMGTVPF 232
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
++ +++ + +A A++I K +A+
Sbjct: 233 TEAEVLEAIDMACEKAAEIRKLYLEAL 259
>gi|291226456|ref|XP_002733208.1| PREDICTED: exosome component 8-like [Saccoglossus kowalevskii]
Length = 275
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 133/263 (50%), Gaps = 11/263 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L +R DGR E R + G +GS+ V+LG T ++ + +L P D P +G
Sbjct: 18 LKKDVRPDGRELGEIRSTIVNIGSISTAEGSALVKLGNTTVICGIKAELCTPTNDEPKKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
+ + P+ P F G PSE A + + + L++S+ V+ E LC+ GK+VW +
Sbjct: 78 FVVPNVDLPPLCSPRFRPGPPSEQAQVVSQFIADVLKDSKMVNHEDLCIAEGKIVWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+ LD GN++DA I+ LA+L P E D E + + LP
Sbjct: 138 DMMCLDYDGNVIDACIISLLAALRNVALP----SIEVDEETAKPKLTSSTSSTMTVQSLP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
++ +F F + S+L+ DPT+ EE + G +T N G++CA+ KPGG + +S I +C+
Sbjct: 194 VSTSFAIFDN-SILIADPTNEEENLATGVVTVVTNECGELCALHKPGGSSLSESQIQECV 252
Query: 260 RLASRMASDITKKIKDAVETYNT 282
+ + +I K + ET+N+
Sbjct: 253 KRSFSRGDEIRKLLD---ETFNS 272
>gi|241952166|ref|XP_002418805.1| exosome complex exonuclease, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223642144|emb|CAX44110.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 331
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 141/270 (52%), Gaps = 33/270 (12%)
Query: 11 LTVNEKRFIETALSSGIRID----------GRNPFEYRKLSIKFGR-EDGSSEVQLGQTH 59
L++N+K ++ AL S IR+ R ++R + IK GS E+ LG+T
Sbjct: 5 LSLNQKNYLIQALKSNIRLSTSNSGGGSNGSRKFNQFRPIDIKLSNTRYGSVELSLGKTK 64
Query: 60 IMGFVTGQLVQPYRDRPNEGTLSIFTEF-SPMADPSFETGRPSESAVELGRIVDRGLRES 118
+M +T ++ +PY+DRP EG ++I E + + S + E + R +DR +R S
Sbjct: 65 VMVNITSRITEPYQDRPFEGIMTINCEIPNHIKIQSNDNDNEDEFINLINRALDRAIRRS 124
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
AVD E+LC++AG+ VW + IDL +L+ GNL+D+ +A + +LL F++P+ ++ +
Sbjct: 125 NAVDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFKKPDVTINNNNTS 184
Query: 179 -------EVIVHPPEEREP-LPLIIHHLPIAVTFGFFS-------------SESLLVIDP 217
+I+H E + P + L I H+PI +TF F+ + + ++D
Sbjct: 185 SNSSTSGNIIIHDDEMKRPFIELSILHIPICLTFSLFNLGSKETNLKTNDIDQEIWLLDG 244
Query: 218 THHEEAVMVGKMTATLNANGDVCAIQKPGG 247
EE+ G + T+N N ++ + K GG
Sbjct: 245 DVMEESCRDGYLIMTMNQNHELIQLSKIGG 274
>gi|397621033|gb|EJK66068.1| hypothetical protein THAOC_13033 [Thalassiosira oceanica]
Length = 583
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 51/312 (16%)
Query: 30 DGRNPFEYRKLSIKFGREDGSSEVQL---GQTHIMGFVTGQLVQP-YRDRPNEGTLSIFT 85
DGR P E R + + F R SE + T V +LV P DRPN+G +
Sbjct: 38 DGRQPSEPRPIRLSFSRCHNRSECVIQFASHTRAAASVYAELVPPPNADRPNDGQVKFTV 97
Query: 86 EFSPMADPSFET-GRPSESAVE------------------------LGRIVDRGLRESRA 120
E PM +E RP + E + RI++R L A
Sbjct: 98 EVGPMGCMGYEVVDRPVSNYSEQGGGGGGGGGSGDVPYVQRLKSNSILRILERTLLIGGA 157
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE--DDL 178
+D E+LCV +G VW + +D+ +LD+GGN +DA +AA+++L +R PE ++GGE DDL
Sbjct: 158 MDAEALCVQSGTWVWRLCVDVSLLDDGGNALDACVLAAVSALRHYRLPEVNIGGEVDDDL 217
Query: 179 -------------EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES------LLVIDPTH 219
I+H ++REP PL +HH P+ TF F+ E+ ++DP
Sbjct: 218 TTAGGNANNGYQETTIIH-SDDREPTPLPLHHTPLTATFALFADETGTTTAVSALLDPCD 276
Query: 220 HEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
EE G +T + N G++C + PGG + +M +L + +I + ++ A+E
Sbjct: 277 REELACDGLLTWSYNKYGEMCCLDFPGGCELRPRQLMASAKLGKKRCIEICELLETALEA 336
Query: 280 YNTERALRKIKR 291
+ +++R
Sbjct: 337 AEKKAESERMER 348
>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
Length = 259
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 149/265 (56%), Gaps = 20/265 (7%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
+ ++ + L G RIDGR E+R + I+ + +GS+ V+LG T ++ V Q +P+
Sbjct: 11 RDYVLSRLRDGERIDGRKFDEFRHIEIETNIIAKAEGSALVKLGNTQVVVGVKMQPGEPF 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G + E P+A P+FE G P E+++EL R+VDRG+RES AVD LC+ G+
Sbjct: 71 PDAPDKGIIITNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLTKLCIEEGE 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREPL 191
VW I ID+H LD+ GNL+DA+++AA+A+LLT P GED
Sbjct: 131 KVWLIFIDIHALDDDGNLMDASSLAAIAALLTTTVPAERFDVGED--------------F 176
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL + LPI+VT ++ +++DP+ E +V MT T + ++ A+QK G +
Sbjct: 177 PLPVRDLPISVTSLIVNNR--ILVDPSRDEVSVGEYFMTITTDQADNIVAMQKSGSYLLS 234
Query: 252 QSVIMQCLRLASRMASDITKKIKDA 276
+ + + ++ A +I + +KD
Sbjct: 235 EEKFYELIDISIEKAREIRELLKDV 259
>gi|148703331|gb|EDL35278.1| exosome component 8, isoform CRA_f [Mus musculus]
Length = 283
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 9/281 (3%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQT 58
+TR + +R TV + L R DGR E+R ++ G DGS+ V+LG T
Sbjct: 5 ETRFKHCFR-TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNT 63
Query: 59 HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES 118
++ V + P D P+ G + + P+ F TG P E A + + + S
Sbjct: 64 TVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNS 123
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
+ + E LC+ GKL W + DL LD GN++DA A LA+L + PE ++ E L
Sbjct: 124 QVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETAL 183
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
+ ++ L + P+A +F F ++LL++DPT EE + G +T + +G
Sbjct: 184 AEV----NLKKKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 238
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+C + KPGG G+ + + C+ A +++K + + +++
Sbjct: 239 LCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 279
>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
fer1]
Length = 260
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 148/264 (56%), Gaps = 23/264 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K FI ++ +G R+DGR +YR++ I + GS+ V++G+T ++ + + P+
Sbjct: 14 KGFILESIKTGKRLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEGDPF 73
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P+ G +++ E PMA P+FE+G PSE A+E R+VDRG+RES+ VDT L + +GK
Sbjct: 74 EDSPDSGVMALNIELLPMAFPTFESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW I +D+ +L+ GN++DAA +AA+ +L P +G +D
Sbjct: 134 RVWMIFVDIDVLNYDGNIIDAATLAAVTALKNTVVPASKIGQKD--------------YS 179
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L I+ P+++T E +V DP EE V G++T T+ + ++ A+QK G +
Sbjct: 180 LPINATPVSITMVKIGDE--IVCDPDLEEEQVSNGRITVTIAEDHNIHAMQK----GDIG 233
Query: 253 SVIMQCLRLASRMASDITKKIKDA 276
+ +R A + +SDI +++++
Sbjct: 234 EFSLDEIRKAIKTSSDIGNRLRES 257
>gi|328773489|gb|EGF83526.1| hypothetical protein BATDEDRAFT_9008 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 133/265 (50%), Gaps = 13/265 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
+RFI+ G+R DGR +R + FG GS V++G T ++ + +L +P
Sbjct: 31 RRFIQ----EGVRADGRPLLHFRNTELDFGPITSASGSVSVKVGDTSVICAIKAELAEPA 86
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
P +G L + + F G P E A + ++ + +D ESLCV+ GK
Sbjct: 87 PTLPYQGYLVPNVDLPALCASHFRPGPPCELAQSISTFLNNIISSGNVLDLESLCVVPGK 146
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
+VW + D+ L+ GN+ DA+ A +A+L + PE ++ E VI + P + P
Sbjct: 147 VVWVLYADIVCLNYAGNIFDASVDALIAALCNVKLPEVTISDESA-PVINNLPAK----P 201
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L ++ + I+ TF F ++LL DPTH EE ++ +T ++ +CAI KPGG + +
Sbjct: 202 LKLNRILISSTFAIFDGQTLLA-DPTHEEEPLVSSTVTIVVDDKDCICAIHKPGGVSITK 260
Query: 253 SVIMQCLRLASRMASDITKKIKDAV 277
+VI +CL LA K I + V
Sbjct: 261 AVIDECLTLAKSRTPSFMKLISNTV 285
>gi|296203741|ref|XP_002749024.1| PREDICTED: uncharacterized protein LOC100407072 [Callithrix
jacchus]
Length = 276
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ GE L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINGETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 273
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 137/258 (53%), Gaps = 17/258 (6%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RIDGR E+R LSI G +GS+ V+LG T + V G +QP R P+ G
Sbjct: 19 LQEGKRIDGRALDEHRPLSIDVGVIPHANGSARVRLGDTEV---VAGVKIQPDRPFPDMG 75
Query: 80 TLSIFT---EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWA 136
IF E P+A PS ETG P +E+ R+VDRG+RES +D + ++ K V
Sbjct: 76 EKGIFICTAEILPLAHPSVETGPPQPYVIEIARVVDRGIRESGMIDLSQMVLVKDKSVIG 135
Query: 137 IRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIH 196
+ D + D+ GNL DA + A+ A++LT + P+ + +DD V+V E P I
Sbjct: 136 LFADNVVTDHDGNLFDACSYASTAAVLTSKMPKWEM--KDDKPVLVDGEESDTP----IT 189
Query: 197 HLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIM 256
+P++VT G +++DP E + ++T T N++G++ A+QK G G ++
Sbjct: 190 TIPVSVTMGLIG--EYIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSSGFSLDQLI 247
Query: 257 QCLRLASRMASDITKKIK 274
+C L+ +I + IK
Sbjct: 248 KCSELSISTGPEIREIIK 265
>gi|412994111|emb|CCO14622.1| predicted protein [Bathycoccus prasinos]
Length = 514
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 47/289 (16%)
Query: 44 FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPS---FETGRP 100
G+ DG ++ QT + VTG L +PY R EG+L + + SPMA P+ E R
Sbjct: 74 LGQTDG--DLNNTQTKVHCVVTGTLNKPY-GRSAEGSLRVHVKMSPMAHPTDAPIEKNRE 130
Query: 101 SESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALA 160
E+ L R++++ R++RA+D ESLCV AG+ VW +R+D+ +L++GG+L A +I A
Sbjct: 131 HETCDGLSRMLEKCFRDARALDLESLCVSAGRYVWHLRLDVTLLNHGGDLPLAVSIGANC 190
Query: 161 SLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESL-------- 212
+L +FRR ECS+ E + V H EERE + L + H P+AV F F+ +
Sbjct: 191 ALGSFRRYECSIDNETN-RVTFH--EERESVKLQLMHHPVAVRFAFYDGSNSKGSGIDEN 247
Query: 213 ---------------------LVIDPTHHEEAVMVGKMTATLNANGDVC---------AI 242
+++D T EEA +G T +N +G+ C +
Sbjct: 248 EESKEDADEEDENNKPHQKYGVLVDATVEEEACAIGFATVAVNEHGETCFSTMDFMGERL 307
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKR 291
K GV + + AS +A + K++K+A E + +R K +R
Sbjct: 308 GKSATRGVDATALAGVHSTASDVAKVVCKEMKEAHEIFEQKRLEEKTRR 356
>gi|225712550|gb|ACO12121.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 210
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
E FI +ALS G R+DGR E R L+I FGRE G++EV+LG+T ++ + + +P
Sbjct: 7 EHSFILSALSEGKRLDGRKLDERRDLTIHFGREWGTTEVKLGETRVLASTSCSVGEPQSS 66
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPNEG L I E P+A S T E+ VEL R+++R L++S+ +D ESLC+ +G+ V
Sbjct: 67 RPNEGVLKIRME--PLAKRSMTT----EALVELNRVIERVLKQSKCLDMESLCISSGEKV 120
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
W I +++ IL++ GN D A++A LA+L F+RP+ +L +VI
Sbjct: 121 WIISLEMTILNDAGNAADCASVAGLAALCHFKRPDVTLKANTTPKVI 167
>gi|157869515|ref|XP_001683309.1| putative exosome complex exonuclease RRP45 [Leishmania major strain
Friedlin]
gi|68224193|emb|CAJ04881.1| putative exosome complex exonuclease RRP45 [Leishmania major strain
Friedlin]
Length = 363
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 151/317 (47%), Gaps = 62/317 (19%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLVQPYRDRP 76
F TA +G+R D R+ + R + I F +V+ G T ++ LV+P RP
Sbjct: 21 FTRTAWKAGLRPDQRDANQLRVVEIDFPLLSRDVVQVKCGNTVATATISCDLVEPSPYRP 80
Query: 77 NEGTLSI-----FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
G + E P+ D S E R S + L R++ + E TESLCV+ G
Sbjct: 81 KHGFFEVHARQLLNERDPL-DQSKEIKRIS---MYLTRLLSGSVLE-----TESLCVIPG 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW+I ++ I++N GN D A A + +L RRPE ++ GED VIVHPP ER+P+
Sbjct: 132 RRVWSIDAEVIIVNNDGNAQDVAQWAVMTALQHVRRPELTIRGED---VIVHPPHERDPV 188
Query: 192 PLIIHHLPIAVTFGF-------------------------------------------FS 208
PL +HH+P++ TF +S
Sbjct: 189 PLPLHHIPLSFTFAVCANPQEVQLAVRAATLRSAHAPRAGASSGANADEGDGEAEELGWS 248
Query: 209 SESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
S++L +V+DP+ E ++ LN G VC+++K G V + + QC+ +A+++
Sbjct: 249 SDALQVVVDPSLEEATAAACTVSVALNGEGHVCSLEKADGCYVSIAYLEQCMEIATKLTQ 308
Query: 268 DITKKIKDAVETYNTER 284
+ ++K+++E +N +R
Sbjct: 309 ALLSQMKESMEAHNAKR 325
>gi|122920909|pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 9 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 68
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 69 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 128
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 129 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 185 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 243
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 244 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 274
>gi|403220409|dbj|BAM38542.1| exosome complex exonuclease [Theileria orientalis strain Shintoku]
Length = 296
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 7/229 (3%)
Query: 20 ETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+ L G+RIDGR+ +R +SI+F GS + G T + ++ ++V+P +RPNEG
Sbjct: 25 QECLKKGLRIDGRSLDSHRHVSIEFNGSPGSVTISFGNTVVFCCISQEIVEPNFERPNEG 84
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L E SP +++ G+ S+S L ++ +ES +D E+LCV +GK VWA+R+
Sbjct: 85 FLYFNVELSPFTSENYDPGKTSDSENNLIYFLENIFKESSFLDLETLCVKSGKEVWALRV 144
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE--VIVHPPEEREPLPLIIHH 197
+H+L + GNL+ A + AALASL +R+P E ++ H + +PL I++
Sbjct: 145 YVHVLQDDGNLLGACSFAALASLSQYRKPNLQESEEFTYSSYMLWH-----KGVPLSIYN 199
Query: 198 LPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+PI +T + V+D EE ++ +++ N G+V K G
Sbjct: 200 MPIMMTVSIMEGQDQYVLDANAFEEKILNTQISILYNQFGEVFWTYKYG 248
>gi|237843665|ref|XP_002371130.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211968794|gb|EEB03990.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 447
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 158/325 (48%), Gaps = 66/325 (20%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
VN + ++ +R+DGR P +R+L I F + +G +E+ LG T + VT + P+
Sbjct: 7 VNAETLVQALQKQKLRVDGRGPDHFRRLQISFRQSNGYAEIALGHTRCVSQVTAR---PF 63
Query: 73 ----RDRPNEGTLSIFTEFSP-MADPSFET------------------GRPSESAVELGR 109
DR ++G LS SP + S E G+ SE EL R
Sbjct: 64 ALLPTDRASDGELSFRVSLSPSIPATSAELAGQVALAASLAADSRRRGGKSSELERELER 123
Query: 110 IVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 169
++ R L++SR VDTE+LC+ +GK W + + + +L++ GNL DAA +AAL L+ F++
Sbjct: 124 MLRRLLKDSRVVDTEALCIQSGKWAWHVLVAVTVLEDDGNLRDAALLAALCGLMHFKKEA 183
Query: 170 CSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLV--------------- 214
++ GE ++H +REPLPL IHHLP+ V+F F + L+
Sbjct: 184 VTVDGET---AVLHAAADREPLPLCIHHLPVLVSFAFLPPRTSLLNVSAPKTEGEEEENV 240
Query: 215 ----------------------IDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+DP+ EEA + GK++ + G++C + K GG +
Sbjct: 241 SGSSFPSDLRNVHDDDDDVDYVVDPSALEEATLPGKVSIAVGKQGELCGMYKVGGPVLRF 300
Query: 253 SVIMQCLRLASRMASDITKKIKDAV 277
S +M+ +LA+ A ++ ++ A+
Sbjct: 301 SHLMKLTKLAAAKAKELLSIVQAAI 325
>gi|31415882|ref|NP_852480.1| exosome complex component RRP43 [Homo sapiens]
gi|21759409|sp|Q96B26.1|EXOS8_HUMAN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Opa-interacting
protein 2; Short=OIP-2; AltName: Full=Ribosomal
RNA-processing protein 43; AltName: Full=p9
gi|18088472|gb|AAH20773.1| Exosome component 8 [Homo sapiens]
gi|123992916|gb|ABM84060.1| exosome component 8 [synthetic construct]
gi|123999809|gb|ABM87413.1| exosome component 8 [synthetic construct]
gi|208966244|dbj|BAG73136.1| exosome component 8 [synthetic construct]
Length = 276
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|344281856|ref|XP_003412693.1| PREDICTED: exosome complex component RRP43-like [Loxodonta
africana]
Length = 282
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 132/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 13 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 72
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 73 AAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 132
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA+ A LA+L + PE ++ E L + +
Sbjct: 133 SQGKLAWVLYCDLICLDYDGNILDASTFALLAALKNVQLPEVNINEETALAEV----NLK 188
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I + P+A +F F ++LL++DPT EE + G +T + G +C + KPGG
Sbjct: 189 KKTHLNIRNYPVATSFAIF-DDTLLIVDPTGEEEHLATGTLTVVTDEGGRLCCLHKPGGS 247
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 248 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIQS 278
>gi|291408704|ref|XP_002720651.1| PREDICTED: exosome component 8 [Oryctolagus cuniculus]
Length = 276
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + SR + E LC+
Sbjct: 67 AAPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSRIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|114649397|ref|XP_522661.2| PREDICTED: exosome complex component RRP43 isoform 4 [Pan
troglodytes]
gi|397513274|ref|XP_003826944.1| PREDICTED: exosome complex component RRP43 [Pan paniscus]
Length = 276
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|71031797|ref|XP_765540.1| exosome complex exonuclease Rrp45 [Theileria parva strain Muguga]
gi|68352497|gb|EAN33257.1| exosome complex exonuclease rrp45, putative [Theileria parva]
Length = 276
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 129/242 (53%), Gaps = 14/242 (5%)
Query: 20 ETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+ L +G+RIDGR+ + +SI F G+S + G T + ++ ++V+P +RPNEG
Sbjct: 25 QDCLKNGLRIDGRSLDSHVYVSIDFDGPPGTSLISFGNTVVFTCISQEIVEPNSERPNEG 84
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L E SP S+E G+ ++ L ++ +ES +D E+LC+ +GK VWA+R+
Sbjct: 85 FLFFNVETSPFTSESYEPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVWALRV 144
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
+H+L + GNL+ A +++ALASLL +R+P L D+L + + PL I+H+P
Sbjct: 145 YVHVLQDDGNLLSACSLSALASLLHYRKPLMELS--DELNHSFYGLWHKGT-PLNIYHVP 201
Query: 200 IAVTFGFFS-----------SESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ VT SE V++P EE ++ +++ N G+V I K G
Sbjct: 202 MFVTVWLLEAPDHSLLDHNLSEYKFVLEPNSFEEKLLKTQVSILFNQFGEVLWIYKNGST 261
Query: 249 GV 250
V
Sbjct: 262 PV 263
>gi|426236417|ref|XP_004012165.1| PREDICTED: exosome complex component RRP43 [Ovis aries]
Length = 276
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 133/269 (49%), Gaps = 9/269 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGSS V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + SP+ F +G P E A + + + S+ + E LC+
Sbjct: 67 GAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+GKL W + DL L++ GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTEEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 269
>gi|60359866|dbj|BAD90152.1| mKIAA4013 protein [Mus musculus]
Length = 308
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 39 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 98
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 99 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCI 158
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 159 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 214
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T + +G +C + KPGG
Sbjct: 215 KKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGS 273
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 274 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 304
>gi|149064770|gb|EDM14921.1| exosome component 8 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 276
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVIENSQIIKKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNVRANPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 272
>gi|221484708|gb|EEE23002.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 449
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 158/326 (48%), Gaps = 67/326 (20%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
VN + ++ +R+DGR P +R+L I F + +G +E+ LG T + VT + P+
Sbjct: 7 VNAETLVQALQKQKLRVDGRGPDHFRRLQISFRQSNGYAEIALGHTRCVSQVTAR---PF 63
Query: 73 ----RDRPNEGTLSIFTEFSP-MADPSFET------------------GRPSESAVELGR 109
DR ++G LS SP + S E G+ SE EL R
Sbjct: 64 ALLPTDRASDGELSFRVSLSPSIPATSAELAGQVALAASLAADSRRRGGKSSELERELER 123
Query: 110 IVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 169
++ R L++SR VDTE+LC+ +GK W + + + +L++ GNL DAA +AAL L+ F++
Sbjct: 124 MLRRLLKDSRVVDTEALCIQSGKWAWHVLVAVTVLEDDGNLRDAALLAALCGLMHFKKEV 183
Query: 170 CSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLV--------------- 214
++ GE ++H +REPLPL IHHLP+ V+F F + L+
Sbjct: 184 LTVDGET---AVLHAAADREPLPLCIHHLPVLVSFAFLPPRTSLLNVSAPKTEGEEEENV 240
Query: 215 -----------------------IDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
+DP+ EEA + GK++ + G++C + K GG +
Sbjct: 241 SGSSFPSDLRNVHDDDDDDMDYVVDPSALEEATLPGKVSIAVGKQGELCGMYKVGGPVLR 300
Query: 252 QSVIMQCLRLASRMASDITKKIKDAV 277
S +M+ +LA+ A ++ ++ A+
Sbjct: 301 FSHLMKLTKLAAAKAKELLSIVQAAI 326
>gi|327264085|ref|XP_003216847.1| PREDICTED: exosome complex exonuclease RRP43-like [Anolis
carolinensis]
Length = 277
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 9/271 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR+ E+R +I G DGS+ V+LG T ++ + +
Sbjct: 9 TVEPVEYYRRFLKENCRPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVVCGIKAEF 68
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + + P+ F G P E A + V + S+ V E LC+
Sbjct: 69 AAPLADSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFVADVIENSQVVMKEDLCI 128
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+ GK+ W + D+ LD GNL+DA A LA+L + P ++ E L + +
Sbjct: 129 VDGKIAWVLYCDIICLDYDGNLLDACMCAFLAALRNVQLPAVTINEETGLAEV----NLK 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
E +PL I P+A +F F ++++++DPT EE + G +T + G +C++ KPGG
Sbjct: 185 EKIPLTIRKEPVATSFILF--DTVMIVDPTAEEEDLATGMLTIVTDEEGKLCSVHKPGGS 242
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ + + C+ A+ ++ K I +++
Sbjct: 243 ALTGAKLQDCISRATARYKEVKKLIDKVIKS 273
>gi|332242319|ref|XP_003270334.1| PREDICTED: exosome complex component RRP43 [Nomascus leucogenys]
Length = 276
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|118601810|ref|NP_001073074.1| exosome complex component RRP43 [Bos taurus]
gi|122135904|sp|Q2KHU3.1|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus]
gi|296481825|tpg|DAA23940.1| TPA: exosome complex exonuclease RRP43 [Bos taurus]
Length = 276
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 133/269 (49%), Gaps = 9/269 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + SP+ F +G P E A + + + S+ + E LC+
Sbjct: 67 GAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+GKL W + DL L++ GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSCLNIRTHPVATSFAVF-DDTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 269
>gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens]
Length = 265
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 8/263 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 5 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 64
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 65 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 124
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 125 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 180
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 181 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 239
Query: 249 GVLQSVIMQCLRLASRMASDITK 271
G+ + + C+ A ++ K
Sbjct: 240 GLTGAKLQDCMSRAVTRHKEVKK 262
>gi|149635838|ref|XP_001511768.1| PREDICTED: exosome complex component RRP43-like [Ornithorhynchus
anatinus]
Length = 276
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 8/251 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D PN+G + + P+ F G P E A + ++ + S+ + E LC+
Sbjct: 67 TAPPGDAPNKGYVVPNVDLPPLCSSRFRPGPPGEEAQVASQFINDVIENSQLIAKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + P + E L + +
Sbjct: 127 SKGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPAVVINEETGLAEV----NFK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ PL I PIA +F F + ++L++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 QKTPLNIRAYPIATSFAIFDN-TILIVDPTGEEENLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCL 259
+ + + CL
Sbjct: 242 ALAGTKLQDCL 252
>gi|354499904|ref|XP_003512044.1| PREDICTED: exosome complex component RRP43-like, partial
[Cricetulus griseus]
Length = 284
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 15 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 74
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + L S+ + E LC+
Sbjct: 75 AAPPLDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVLENSQIIKKEDLCI 134
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 135 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 190
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T ++ G +C++ KPGG
Sbjct: 191 KKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTIVMDEEGKLCSLHKPGGS 249
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 250 GLTGAKLQDCMSRAVSRHKEVNKLLDEVIQS 280
>gi|408404984|ref|YP_006862967.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365580|gb|AFU59310.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 274
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 127/226 (56%), Gaps = 13/226 (5%)
Query: 22 ALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNE 78
+L+ G R+DGR+ E R L I+ + +GS+ V+LG + ++ + + +P+ +
Sbjct: 22 SLARGKRLDGRDFNEQRPLEIEVDVIKKANGSARVKLGDSEVIAGIKVETGEPFEGLEEK 81
Query: 79 GTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIR 138
G L + E P A P E G P E VEL R+VDRG+RES +D + L ++ GK+V+ I
Sbjct: 82 GALIVTAEVLPTASPYIEPGPPDEEVVELARVVDRGVRESEMIDLDQLVLVPGKIVYTIF 141
Query: 139 IDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHL 198
+D +++ GNL DA + A +ASLLT + P + +DD +V + R P+P + +
Sbjct: 142 VDCSVINADGNLFDATSYAVVASLLTAKLPILEM--KDDK--VVDTGQTR-PMP--VTTI 194
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
P+++T +VIDPT EE M ++T T N G CAIQK
Sbjct: 195 PVSITAARIG--DYVVIDPTAEEEGCMDARITITTNDEG-FCAIQK 237
>gi|146086838|ref|XP_001465658.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
infantum JPCM5]
gi|398015399|ref|XP_003860889.1| exosome complex exonuclease RRP45 homolog, putative [Leishmania
donovani]
gi|134069757|emb|CAM68083.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
infantum JPCM5]
gi|322499112|emb|CBZ34184.1| exosome complex exonuclease RRP45 homolog, putative [Leishmania
donovani]
Length = 363
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 148/313 (47%), Gaps = 54/313 (17%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLVQPYRDRP 76
F TA +G+R D R + R + + F +V+ G T V+ LV+P RP
Sbjct: 21 FTRTAWKAGLRPDQREANQLRVVEMDFPLLSRDVVQVKCGNTVATATVSCDLVEPSPYRP 80
Query: 77 NEGTLSIFT-EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
G + + DP + ++ L R++ S ++TE LCV+ G+ VW
Sbjct: 81 KHGFFEVHARQLLHERDPLDQFKEIKRISMYLTRLLS-----SSVLETEGLCVIPGRRVW 135
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+I ++ I++N GN+ D A A +A+L RRPE ++ GED VIVHPP ER+P+PL +
Sbjct: 136 SIDAEVIIVNNDGNVQDVAQWAVMAALQHVRRPELTIRGED---VIVHPPHERDPVPLPL 192
Query: 196 HHLPIAVTFGF-------------------------------------------FSSESL 212
HH P++ TF +SS +L
Sbjct: 193 HHTPLSFTFAVCANPQEVQLAVRAATLRRAQAPRAGASSGANADEGDGEAKDLGWSSNAL 252
Query: 213 -LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITK 271
+V+DP+ E A ++ +N G VC+++K G V + + QC++ A+++ +
Sbjct: 253 QVVVDPSLEEAAAAACTVSVAVNGEGHVCSLEKADGCDVSIAYLEQCMKAATKLTQALLT 312
Query: 272 KIKDAVETYNTER 284
++K+++E +N +R
Sbjct: 313 QMKESMEAHNAKR 325
>gi|254692991|ref|NP_081424.3| exosome complex component RRP43 isoform 2 [Mus musculus]
gi|21759414|sp|Q9D753.1|EXOS8_MOUSE RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|22208743|emb|CAD43467.1| CBP-interacting protein 3 [Mus musculus]
gi|148703329|gb|EDL35276.1| exosome component 8, isoform CRA_d [Mus musculus]
Length = 276
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T + +G +C + KPGG
Sbjct: 183 KKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 272
>gi|45595709|gb|AAH67250.1| Exosc8 protein, partial [Mus musculus]
Length = 270
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 1 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 60
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 61 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCI 120
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 121 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 176
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T + +G +C + KPGG
Sbjct: 177 KKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGS 235
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 236 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 266
>gi|426375219|ref|XP_004054442.1| PREDICTED: exosome complex component RRP43 [Gorilla gorilla
gorilla]
Length = 276
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE + E L + +
Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVIINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|149730159|ref|XP_001495596.1| PREDICTED: exosome complex component RRP43-like [Equus caballus]
Length = 276
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTISEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSFLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + V++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVVKS 272
>gi|297693867|ref|XP_002824217.1| PREDICTED: exosome complex component RRP43 [Pongo abelii]
Length = 276
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 9/269 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDTGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNVRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 269
>gi|386782149|ref|NP_001247467.1| exosome component 8 [Macaca mulatta]
gi|402901796|ref|XP_003913826.1| PREDICTED: exosome complex component RRP43 [Papio anubis]
gi|384945128|gb|AFI36169.1| exosome complex component RRP43 [Macaca mulatta]
Length = 276
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|37589850|gb|AAH59089.1| Exosome component 8 [Mus musculus]
Length = 276
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T + +G +C + KPGG
Sbjct: 183 KKSYLNVRTNPVAASFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 272
>gi|355754637|gb|EHH58538.1| Exosome complex exonuclease RRP43, partial [Macaca fascicularis]
Length = 272
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 3 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 62
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 63 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 122
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 123 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 178
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 179 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 237
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 238 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 268
>gi|395520931|ref|XP_003764575.1| PREDICTED: exosome complex component RRP43 [Sarcophilus harrisii]
Length = 276
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 128/271 (47%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R +I G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTINIGSITTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + P ++ E L + +
Sbjct: 127 SHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPAVTINEETGLAEVNFKKKSH 186
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L I PIA +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 187 ----LNIRTHPIATSFAIF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +I K + + +E+
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEINKLMDEVIES 272
>gi|395861770|ref|XP_003803149.1| PREDICTED: exosome complex component RRP43 [Otolemur garnettii]
Length = 280
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 136/282 (48%), Gaps = 9/282 (3%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQ 57
M ++A ++ TV + L R DGR E+R ++ G DGS+ V+LG
Sbjct: 1 MGGKMAAGFK-TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGN 59
Query: 58 THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
T ++ V + P D P++G + + P+ F +G P E A + + +
Sbjct: 60 TTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIEN 119
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177
S+ + E LC+ GKL W + DL LD GN++DA A LA+L + PE + E
Sbjct: 120 SQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVIINEETA 179
Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG 237
L + ++ L I P+A +F F ++LL++DPT EE + G +T ++ G
Sbjct: 180 LAEV----NLKKKSYLNIRTYPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEG 234
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+C + KPGG G+ + + C+ A ++ K + + +++
Sbjct: 235 KLCCLHKPGGSGLTGAKLQDCMSRAVTRHKELKKLMDEVIKS 276
>gi|401888332|gb|EJT52292.1| exosome complex exonuclease rrp45 [Trichosporon asahii var. asahii
CBS 2479]
Length = 259
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 139/298 (46%), Gaps = 78/298 (26%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
++ F+ AL G R+DGR P E R + FG E GS E ++G+T
Sbjct: 11 QREFLVQALEQGKRLDGRLPLEQRPFELSFGAELGSVECRMGKT---------------- 54
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
SE V + R++++ +R + AVD E+LC++AG+ V
Sbjct: 55 ------------------------AASEDEVMITRLLEKSIRRTEAVDREALCIVAGEKV 90
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV------------ 182
+ GNL+D A+IAA+ +L FR+PE + G+ EVIV
Sbjct: 91 SS-------RGEAGNLLDCASIAAMTALKHFRKPEVEVHGD---EVIVVRNLNFLLASIP 140
Query: 183 -------------HPPEEREPLPLIIHHLPIAVTFGFFSSESLL-VIDPTHHEEAVMVGK 228
H P+ER PLPL IHH P+ +TF +F E L ++DPTH EE + G
Sbjct: 141 PRASHFGFSADMQHSPDERAPLPLAIHHNPLCLTFAYF--EDLQPILDPTHLEETLASGT 198
Query: 229 MTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
MT TLNA ++C + K GG + +M +R+ + K+I+DA+ +R +
Sbjct: 199 MTVTLNAQRELCVLSKAGGSALSVDDVMAVVRVGVERVRESVKQIEDALVKDAAQRVV 256
>gi|403286361|ref|XP_003934463.1| PREDICTED: exosome complex component RRP43 [Saimiri boliviensis
boliviensis]
Length = 276
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AVPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|352682029|ref|YP_004892553.1| exosome complex exonuclease 2 [Thermoproteus tenax Kra 1]
gi|350274828|emb|CCC81474.1| exosome complex exonuclease 2, aRrp42 (RNase PH domain)
[Thermoproteus tenax Kra 1]
Length = 274
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 132/232 (56%), Gaps = 10/232 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I +SSG R+DGR +YR ++I+ DGS+EV LG+T ++ V L P+ D
Sbjct: 20 IRRLISSGNRLDGRPLDQYRDITIRTNVTNTADGSAEVLLGRTRVVAGVKIGLGNPFPDA 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+EG L + E P A P E G P E+A+EL R+VDRGLR S +D + L + K V+
Sbjct: 80 PDEGVLVVNAEVLPHASPYSEVGPPDETAIELARVVDRGLRHSGFIDFKRLAIDQSK-VY 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ +DL++L++ GNLVDA+N+AA+A+L + P +D+ R +P +
Sbjct: 139 VVWLDLYVLNDDGNLVDASNLAAVAALRSTMLPTVV---KDEAGAYKLDKNNRTAMPSDL 195
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
PI+V+ G + +++DP EE + ++T T++ + ++ +IQK G
Sbjct: 196 SKAPISVSLGKIDTR--IIVDPILEEELSLDSRITITISQD-NIVSIQKTIG 244
>gi|328866292|gb|EGG14677.1| hypothetical protein DFA_10935 [Dictyostelium fasciculatum]
Length = 282
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 141/278 (50%), Gaps = 12/278 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRED---GSSEVQLGQTHIMGFVTGQ 67
L+ +E FI+ + + +R DGR +YR + G GSS + L THI+ +
Sbjct: 6 LSPSEIYFIQQGVENNLRNDGRTRLDYRPFELDIGEISHAVGSSRIILADTHILVGIKAD 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P PN+G+L+ + P A P +E +EL + ++R +++S ++D LC
Sbjct: 66 ISAPDPLTPNKGSLTFSVDCCPSASPEYEGKGADYINIELAKQLERVMKDSNSMDLGGLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GED---DLEVIVH 183
++ GK W + ID +LD+GGNL DA +I A+L R P + GE D EV
Sbjct: 126 IMPGKYCWNLYIDAIVLDSGGNLFDALSIGVRAALANTRLPTIRITQGEYSTVDFEV-SD 184
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
PE + L I +PI VT ++ V+D + EE M +MT +N G++C IQ
Sbjct: 185 DPEAMQSLD--IDGVPINVTLTTIGNQ--FVVDCSGEEEQCMDARMTIGVNKRGNICGIQ 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYN 281
K G G+ I Q + A ++ S+I K + + ++ ++
Sbjct: 241 KGGVAGIDAHTINQMILAAKQVGSEILKTMDNVLKDHH 278
>gi|301791884|ref|XP_002930910.1| PREDICTED: exosome complex exonuclease RRP43-like [Ailuropoda
melanoleuca]
Length = 276
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 8/275 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDTPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + D+ LD GN++DA A LA+L + PE ++ E L VH ++
Sbjct: 127 SPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLPEVTINEETGLAE-VHLKKKS 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 186 Y---LNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
G+ + + C+ A ++ K + + +++ ++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKSK 276
>gi|219129572|ref|XP_002184959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403454|gb|EEC43406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 269
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 143/270 (52%), Gaps = 20/270 (7%)
Query: 27 IRIDGR--NPFEYRKLSIKFGREDGSSEVQLGQ-THIMGFVTGQLVQPYRDRPNEGTLSI 83
+R DGR N +LS+ + Q G+ T + T +L+ P DRPNEG +++
Sbjct: 1 LRTDGRVWNQLRSSRLSLTRWENGATCTTQWGKGTRVSCTCTAELLPPNPDRPNEGMVAL 60
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
+ SP A +F P + + R ++R L A+DTE+LCV VW + + + +
Sbjct: 61 SVDLSPSASTAFRQAAPVTTGGSILRSLERVLLTGGALDTEALCVTPQYWVWKLSLAVTV 120
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP-----EEREPLPLIIHHL 198
LD+GGNL+DA+ +AALA+L +R+P L E + PP + +EP+PL +HH
Sbjct: 121 LDDGGNLMDASVLAALAALRHYRKPHVELAAEGSNSGV--PPRWIQSDLKEPVPLPLHHT 178
Query: 199 PIAVTFGFF----------SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P++++F S++ L++DP EE V VG ++ +N +G+VC + GG
Sbjct: 179 PLSISFALLPHDTAAQSTASAKVTLLVDPDAREELVSVGTLSIAMNVHGEVCLLDFGGGC 238
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVE 278
+ + + RLA++ D+ + ++ +++
Sbjct: 239 ELATERLREAYRLAAQHVQDLCQALETSLQ 268
>gi|348583439|ref|XP_003477480.1| PREDICTED: exosome complex component RRP43-like [Cavia porcellus]
Length = 276
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 129/269 (47%), Gaps = 9/269 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AVPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+GKL W + DL LD GN++DA A LA+L + PE + E L + +
Sbjct: 127 SSGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVRINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T +N G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMNEEGRLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + C+ A ++ KK+ D V
Sbjct: 242 GLTGPKLQDCMGRAVTRHKEV-KKLMDEV 269
>gi|355700935|gb|EHH28956.1| Exosome complex exonuclease RRP43, partial [Macaca mulatta]
Length = 272
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 3 TVEPLEYYRRFLLENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 62
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F G P E A + + + S+ + E LC+
Sbjct: 63 AAPPTDAPDKGYVVPNVDLPPLCSSRFRAGPPGEEAQVASQFIADVIENSQIIQKEDLCI 122
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 123 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 178
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 179 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 237
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 238 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 268
>gi|340344305|ref|ZP_08667437.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519446|gb|EGP93169.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 272
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 146/268 (54%), Gaps = 11/268 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I L G R+DGR E R L I+ + +GS+ V+LG + ++ V Q +P
Sbjct: 11 KKSQILELLEQGKRVDGRALDEPRNLIIETNAIPKANGSARVRLGDSEVICGVKIQPDRP 70
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D ++G E P++ P+ ETG P +EL R+VDRG+RES +D L +
Sbjct: 71 FPDMGDKGIFICTAELLPLSHPTVETGPPGPDVIELARVVDRGIRESHMIDLTQLVIEKN 130
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K V + D ++D GNL DA AA A++L+ + P+ + ++D+ +V E P
Sbjct: 131 KSVVGVFADNVVVDYDGNLFDACAYAATAAILSSKTPKWEM--KNDVPTLVEGEESDVP- 187
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
I +P++VT G + +++DP E + M ++T T ++NG++CA+QK G +G
Sbjct: 188 ---ISTIPVSVTMGKIGNH--IIVDPNGDEWSSMDARITITTDSNGNICALQKGGNDGFT 242
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVET 279
+++C L+ ++ + I +K+K A E+
Sbjct: 243 FEQVIKCGELSVKVGAKIREKLKQAKES 270
>gi|383856603|ref|XP_003703797.1| PREDICTED: exosome complex component RRP43-like [Megachile
rotundata]
Length = 278
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 136/269 (50%), Gaps = 9/269 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
T++ ++++ L+ +R DGR +R +S+ D S+ ++G T ++ + +L
Sbjct: 7 TIHPVKYLQDHLAQDVRPDGRQFLSFRSVSVNISSITHADSSAIFKIGSTTVVCGIKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P + P G + E SP+ P F G PS+ A + +++ L S A+D + LC+
Sbjct: 67 TTPRTESPEYGYIVPNVELSPLCSPKFRPGPPSDQAQIISNLINNILINSAAIDLKDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL ++ G+++DA A A+L T PE + + VH ++
Sbjct: 127 CKGKLAWVLYCDLLCINYDGSVIDACVGALTAALNTLTLPEVVYNIQTG-SISVHSTKK- 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I LP+++TF F+ + LLV DPT EE + +G++T LN +C I KPGG
Sbjct: 185 --ISLSIKELPVSITFAIFNDQ-LLVADPTDEEENLCLGRLTIVLNKE-KICCIHKPGGI 240
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ + ++ L + + A + I A+
Sbjct: 241 PISYDLFLKSLTKSKKRAELVRSLINTAI 269
>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
Length = 226
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
++++I S G R+DGR+ E R L++ G R +GS+ V LG T ++ V + P
Sbjct: 15 QRKYIHKLASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGNTRVLVGVKIEPGTP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D PN G L+ E +P+A P+FE G P E A+EL R+VDRG+RE A+D E L + G
Sbjct: 75 FPDTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEEG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW + ID+H+LD GNL DAA ALA+L P +D +
Sbjct: 135 EKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGEDFK------------ 182
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
L + H P+ VTF +V DP EE++ ++T N
Sbjct: 183 -LPVQHYPVPVTFAKIG--DWIVADPNLDEESIASARLTVATN 222
>gi|224043308|ref|XP_002196618.1| PREDICTED: exosome complex component RRP43 [Taeniopygia guttata]
Length = 276
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 130/271 (47%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +L
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + E + F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPAADSANKGYIVPNVELPSLCAERFRSGPPGEEAQAASQFIADVIENSQMIVKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + D+ LD GNL+DA+ A LA+L + P ++ E L + +
Sbjct: 127 ANGKLAWVLYCDIICLDYDGNLLDASVFALLAALKNVQLPSVTINEETGLSEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ PLII P+A +F F ++LL++DPT EE + G +T + G +C++ KPGG
Sbjct: 183 QKNPLIIRKHPVATSFAIF-DDTLLIVDPTAEEEDLATGTVTIVTDEEGRLCSVHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ + + C+ A ++ K I +++
Sbjct: 242 PLTGAKLQDCITRAITRHKEVKKLIDKVIKS 272
>gi|74146647|dbj|BAE41329.1| unnamed protein product [Mus musculus]
Length = 257
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 127/255 (49%), Gaps = 8/255 (3%)
Query: 28 RIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR E+R ++ G DGS+ V+LG T ++ V + P D P+ G +
Sbjct: 4 RPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVPN 63
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+ P+ F TG P E A + + + S+ + E LC+ GKL W + DL L
Sbjct: 64 VDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLICL 123
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GN++DA A LA+L + PE ++ E L + ++ L + P+A +F
Sbjct: 124 DYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLKKKSYLNVRTNPVATSF 179
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
F ++LL++DPT EE + G +T + +G +C + KPGG G+ + + C+ A
Sbjct: 180 AVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVT 238
Query: 265 MASDITKKIKDAVET 279
+++K + + +++
Sbjct: 239 RHKEVSKLLDEVIQS 253
>gi|154337667|ref|XP_001565066.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134062106|emb|CAM45222.1| putative exosome complex exonuclease RRP45 homolog [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|449310618|gb|AGE92536.1| exosome complex exonuclease RRP45-like protein [Leishmania
braziliensis]
Length = 363
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 148/317 (46%), Gaps = 62/317 (19%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLVQPYRDRP 76
F TA +G+R D R + R + I F +V+ G T V+ LV+P RP
Sbjct: 21 FTRTAWKAGLRPDQREANQLRVVEINFPLLSRDVVQVKCGNTVATATVSCDLVEPSPYRP 80
Query: 77 NEGTLSI-----FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
G + E P+ D S E R S + L R+ + E TE LC++ G
Sbjct: 81 KHGFFEVHARQLLHERDPL-DQSKEIKRIS---MYLTRLFTGSVLE-----TEGLCIIPG 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW+I ++ I++N GN+ D A +A+L RRPE ++ G+D VIVHPP EREP+
Sbjct: 132 RRVWSIDAEVIIMNNDGNVQDVGQWAVMAALQHVRRPELTIRGDD---VIVHPPHEREPV 188
Query: 192 PLIIHHLPIAVTFGF-------------------------------------------FS 208
PL +HH+P++ TF +S
Sbjct: 189 PLPLHHIPLSFTFAVCANPQEVQLAVRASTLRRGQTPRAGASSDANVDEDDGEEKELGWS 248
Query: 209 SESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMAS 267
S++L +V+DP E A ++ +N G VC+++K G V S + +C+ A+++
Sbjct: 249 SDALQVVVDPALEEVAAAACTVSVAVNGEGHVCSLEKADGCDVSISCLEKCMETATKLTQ 308
Query: 268 DITKKIKDAVETYNTER 284
+ ++K+++E +N +R
Sbjct: 309 ALLTQMKESMEAHNLKR 325
>gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 271
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 144/268 (53%), Gaps = 17/268 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I L G R+DGR E R+L I+ + +GS+ V+LG + + V G +QP
Sbjct: 11 KKSQILELLEQGKRVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEV---VCGVKIQP 67
Query: 72 YRDRPNEGTLSIF---TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
R P+ G IF E P++ PS ETG P +EL R+VDRG+RES +D L +
Sbjct: 68 DRPFPDMGDKGIFICTAELLPLSHPSVETGPPGPDVIELARVVDRGIRESHMIDLSQLVI 127
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
K V + D ++D GNL DA AA A+LL+ + P+ + ++D+ +V E
Sbjct: 128 EKNKSVVGVFADNVVVDYDGNLFDACAYAATAALLSSKSPKWEM--QNDVPTLVEGGESE 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P I +P++VT G + +++DP E M ++T T ++NG++CA+QK G
Sbjct: 186 VP----ITTIPVSVTMGKIGNH--IIVDPNGDEWDSMDARITITTDSNGNICALQKGGIG 239
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDA 276
G +++C L+ ++ S I +K+K A
Sbjct: 240 GFSFEEVIKCGELSVKVGSKIREKLKQA 267
>gi|226372912|gb|ACO52081.1| Exosome complex exonuclease RRP43 [Rana catesbeiana]
Length = 272
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 8/240 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR+ E+R +I G DGS+ V++G ++ + + P D PN+G
Sbjct: 18 LKEKCRPDGRDLSEFRTTTINVGSITTADGSALVKIGNCTVICGIKAEFATPPIDAPNKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
+ E +P+ P F G P E A + + + S+ + E LC+ GKL W +
Sbjct: 78 YIVPNVELTPLCSPRFRPGPPGEEAQVASQFIADVIENSQMILKEDLCIENGKLAWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
DL LD GGNL+D A +ASL R P + E L + L IH P
Sbjct: 138 DLICLDYGGNLLDTCMCALVASLRNARLPSVKINEETGLAQVNLSTRN----ALKIHKHP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
++ +F F ++ +LV DPT+ EE++ G MT + +G +C I+KPGG + + C+
Sbjct: 194 LSTSFAIFDNKHILV-DPTNEEESLATGLMTIVTDEDGRLCTIRKPGGSALSAEKLQDCI 252
>gi|73993245|ref|XP_534492.2| PREDICTED: exosome complex component RRP43 isoform 1 [Canis lupus
familiaris]
Length = 276
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + D+ LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNAQLPEVTINEETGLAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|401422248|ref|XP_003875612.1| exosome complex exonuclease RRP45 homolog,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322491850|emb|CBZ27123.1| exosome complex exonuclease RRP45 homolog,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 363
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 148/313 (47%), Gaps = 54/313 (17%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLVQPYRDRP 76
F TA +G+R D R + R + + F +V+ G T V+ LV+P RP
Sbjct: 21 FTRTAWKAGLRPDQREANQLRVVEMDFPLLSRDVVQVKCGNTVATATVSCDLVEPSPYRP 80
Query: 77 NEGTLSIFT-EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
G + + DP + ++ L R++ + E TE LCV+ G+ VW
Sbjct: 81 KHGFFEVHARQLLHERDPLDQLKEIKRISMYLTRLLSGSVLE-----TEGLCVIPGRRVW 135
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+I ++ I++N GN+ D A A +A+L RRPE ++ GED V+VHPP ER+P+PL +
Sbjct: 136 SIDAEVIIVNNDGNVQDVAQWAVMAALQHVRRPELTIRGED---VVVHPPHERDPVPLPL 192
Query: 196 HHLPIAVTFGF-------------------------------------------FSSESL 212
HH+P++ TF +SS++L
Sbjct: 193 HHIPLSFTFAVCANPQEVQLAVRAATLRRAQGSRGGAPSGANADEGDGEAKDLGWSSDAL 252
Query: 213 -LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITK 271
+V+DP+ E A ++ +N G VC+++K G V + + QC+ A+++ +
Sbjct: 253 QVVVDPSLEEAAAAACTVSVAVNGEGYVCSLEKADGCDVSIAYLGQCMETATKLTQALLM 312
Query: 272 KIKDAVETYNTER 284
++K+++E +N +R
Sbjct: 313 QMKESMEAHNAKR 325
>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
JCM 11548]
gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
JCM 11548]
Length = 274
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 143/263 (54%), Gaps = 11/263 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I ++S RIDGR + R + +K G DGS+EV+LG+TH++ V L QP+ D
Sbjct: 20 IRRLIASKARIDGREVDQVRPVEVKTGVVKTADGSAEVKLGKTHVVAGVKIGLGQPFPDA 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+EG L + E P A P E G P E A+EL R+VDRGLR VD + L V GK +
Sbjct: 80 PDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGLRHCGYVDFKKLSVEGGK-AY 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ +DL+++++ GNLVDAAN+AA+A+L P +D+ + R P+PL +
Sbjct: 139 VLWVDLYVINDDGNLVDAANLAAVAALKNAALPAVV---KDETGAVKLDRNSRTPMPLDL 195
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
PIAV+ G + ++L +DP EE + G++T T A + AIQK G Q +
Sbjct: 196 EKAPIAVSVGKIA--NVLFLDPIFEEELSLDGRITYTF-AQERIVAIQKTLG-SFTQQEL 251
Query: 256 MQCLRLASRMASDITKKIKDAVE 278
L LA R +K+ ++
Sbjct: 252 EAALDLAWRGRESYLASLKEVLQ 274
>gi|385806381|ref|YP_005842779.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
gi|383796244|gb|AFH43327.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
Length = 274
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 13/253 (5%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I + L +G RIDGR E RK++I + DGS+ V LG T ++ V + PY D
Sbjct: 19 IISVLETGKRIDGRALDEVRKITIVPNYIEKSDGSALVYLGDTLVLVGVKVEPGAPYPDN 78
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
PNEG L + EF P+A P+FE G P E+A EL RI+DR RES+A+ L ++ G+ V
Sbjct: 79 PNEGVLMVNAEFVPLASPAFEPGPPDENAYELARIIDRSYRESKAIGLGELALVPGQKVL 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSLGGEDDLEVIVHPPEEREPLPL 193
+ D+++L++ GNL+DA+ IA+L +L+ R P E + GG V E + L
Sbjct: 139 VVWNDIYVLNHSGNLIDASAIASLVALMNTRIPVYEEADGGN-----FVKKENEYKG-NL 192
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ I T + L DPT EE V +++ + +G + +QK G + ++
Sbjct: 193 NVKKKIITATIAKIGNYYLA--DPTDEEEYVSDARLSVSFTEDGIIAGMQKMGIGYLDEN 250
Query: 254 VIMQCLRLASRMA 266
I Q + LA + A
Sbjct: 251 DINQMIDLAWKTA 263
>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
DSM 4304]
gi|29336575|sp|O29756.1|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 259
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 152/270 (56%), Gaps = 21/270 (7%)
Query: 11 LTVNEKR-FIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTG 66
+ V+ KR ++ + L RIDGR E+RK+ I + +GS+ V+LG T ++ V
Sbjct: 5 ILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKM 64
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
Q +PY D P+ G + + E P+A P+FE G P E+++EL R+VDRG+RES AVD L
Sbjct: 65 QPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPP 185
+ G+ VW + +D+H LD+ GNL+DA+ +AA+A+L+ + P GED L
Sbjct: 125 VIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYL------- 177
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
LP + LP++VT ++ L +DP+ E +V +T T + + +V A+QK
Sbjct: 178 -----LP--VRDLPVSVTSLIVGNKYL--VDPSREEMSVGDTTLTITTDKDDNVVAMQKS 228
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKD 275
GG + + + + L ++ A + +K K+
Sbjct: 229 GGYLLDEKLFDELLDVSINCARKLREKFKE 258
>gi|254675240|ref|NP_001157042.1| exosome complex component RRP43 isoform 1 [Mus musculus]
Length = 280
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 12/275 (4%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFT----EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
P D P+ G + + + P+ F TG P E A + + + S+ + E
Sbjct: 67 AAPPVDAPDRGYVVFLSVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKE 126
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
LC+ GKL W + DL LD GN++DA A LA+L + PE ++ E L +
Sbjct: 127 DLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV--- 183
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
++ L + P+A +F F ++LL++DPT EE + G +T + +G +C + K
Sbjct: 184 -NLKKKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHK 241
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
PGG G+ + + C+ A +++K + + +++
Sbjct: 242 PGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 276
>gi|126327460|ref|XP_001368047.1| PREDICTED: exosome complex component RRP43-like [Monodelphis
domestica]
Length = 276
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V G+
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSITTADGSALVKLGNTTVICGVKGEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + P + E L + +
Sbjct: 127 SHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPAVIINEETGLAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I PIA +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSHLNIRTHPIATSFAIF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>gi|363729290|ref|XP_003640625.1| PREDICTED: exosome complex component RRP43-like [Gallus gallus]
Length = 276
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +L
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + E + F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQVIAKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + D+ LD GN++DA+ A LA+L + P ++ E L + +
Sbjct: 127 ADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVTINEETGLSEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ PL+I P+A +F F ++LL++DPT EE + G +T + + +C++ KPGG
Sbjct: 183 QKNPLVIRKHPVATSFAIF-DDTLLIVDPTAEEEDLATGTVTVVTDEDDRLCSVHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ + + C+ A ++ K I +++
Sbjct: 242 PLTGAKLQDCISRAITRHKEVKKLIDKVIKS 272
>gi|387018402|gb|AFJ51319.1| Exosome complex exonuclease RRP43-like [Crotalus adamanteus]
Length = 276
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 126/263 (47%), Gaps = 9/263 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR+ E+R +I G DGS+ V+LG T ++ + +
Sbjct: 11 TVEPLEYYRRFLKENCRPDGRDLGEFRTTTINIGSITTADGSALVKLGNTTVICGIKAEF 70
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + + P+ F G P E A + + + S+ + E LC+
Sbjct: 71 ATPTVDSSNKGYIIPNVDLPPLCSSRFRPGPPCEEAQAASQFIADIIENSQMIMKEDLCI 130
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
L GK+VW + D+ LD GNL+DA A LA+L P ++ E L + +
Sbjct: 131 LDGKIVWVLYCDIICLDYDGNLLDACICAFLAALKNVLLPVVAINAETGLVEV----NLK 186
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
E PL I P+A +F F ++L+V+DPT EE + G +T + N +C++ KPGG
Sbjct: 187 EKNPLTIKKQPVATSFVLF--DTLVVVDPTAEEEDLASGTLTIVIIENDKLCSVHKPGGR 244
Query: 249 GVLQSVIMQCLRLASRMASDITK 271
+ ++ + C+ A ++ K
Sbjct: 245 TITEAKLQDCISRAKTRHKEVQK 267
>gi|66529825|ref|XP_624000.1| PREDICTED: exosome complex exonuclease RRP43-like [Apis mellifera]
Length = 281
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 137/275 (49%), Gaps = 9/275 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
++ ++++ L+ +R DGR +R +S+ D S+ ++G T I+ + +L
Sbjct: 7 IIHPVKYLQDHLAQDVRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKSEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P + P G + E P+ P F G PS+ A + ++V+ LR S A+D + LCV
Sbjct: 67 AVPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLVENILRNSAAIDLKELCV 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL ++ G+++DA A A+L T PE E I R
Sbjct: 127 YKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPEIFYNVETGHVSINSTKRIR 186
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P I LP+++TF F ++ LL+ DPT EE++ +GK+T +N +C I KPGG
Sbjct: 187 FP----IKALPVSITFAIFDNQ-LLIADPTDDEESLCLGKLTIVMNEE-KICCIHKPGGI 240
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ Q + ++ L + + A + I A+ T E
Sbjct: 241 PISQDIFLKSLIKSKKRAELVRSLIDSAISTMKQE 275
>gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 272
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 11/259 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R E R L I G +GS+ +LG T ++ + Q +P+ D ++G
Sbjct: 19 LQEGKRIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKVQPDKPFPDMGDKG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
E P+A PS ETG P + +E+ R+VDRG+RES +D + + K V +
Sbjct: 79 IFICTAEILPLAHPSAETGPPQPNVIEIARVVDRGIRESGMIDLSQMVLQKDKSVIGVFA 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D + D+ GNL DA + AA+A+++T + P+ + +DD V++ P I +P
Sbjct: 139 DNVVTDHDGNLFDACSYAAVAAIITSKIPKWEM--KDDKPVLIEDQASDTP----ITTIP 192
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
I+VT G +++DP E + ++T T N++G++ A+QK G +G +++C
Sbjct: 193 ISVTMGLIG--EFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDGFSLEQLVKCA 250
Query: 260 RLASRMASDITKKIKDAVE 278
L+ + I IK A E
Sbjct: 251 ELSIAIGKKIRDIIKQATE 269
>gi|393796027|ref|ZP_10379391.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 271
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 144/268 (53%), Gaps = 17/268 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I L G R+DGR E R+L I+ + +GS+ V+LG + + V G +QP
Sbjct: 11 KKSQILELLEQGKRVDGRALDEPRQLVIEVNAIPKANGSARVRLGDSEV---VCGVKIQP 67
Query: 72 YRDRPNEGTLSIFT---EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
R P+ G IF E P++ PS ETG P +EL R+VDRG+RES +D L +
Sbjct: 68 DRPFPDMGDKGIFICTAELLPLSHPSVETGPPGPDVIELARVVDRGIRESHMIDLSQLVI 127
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
K V + D ++D GNL DA AA A+LL+ + P+ + ++D+ +V E
Sbjct: 128 EKNKSVVGVFADNVVVDYDGNLFDACAYAATAALLSSKSPKWEM--QNDVPTLVEGGESE 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P I +P++VT G + +++DP E M ++T T ++NG++CA+QK G
Sbjct: 186 VP----ITTIPVSVTMGKIGNH--IIVDPNGDEWDSMDARITITTDSNGNICALQKGGIG 239
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDA 276
G +++C L+ ++ S I +K+K A
Sbjct: 240 GFSFEEVIKCGELSVKVGSIIREKLKQA 267
>gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 272
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 134/259 (51%), Gaps = 11/259 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R E R L I G +GS+ +LG T ++ + Q +P+ D ++G
Sbjct: 19 LQEGKRIDDRALDEPRPLVIDTGVIPHANGSARARLGDTEVVSGIKIQPDKPFPDMGDKG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
E P+A PS ETG P + +E+ R+VDRG+RES +D L + K V +
Sbjct: 79 IFICTAEILPLAHPSAETGPPQPNVIEIARVVDRGIRESGMIDLSQLVLQKDKSVIGVFA 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D + D+ GNL DA + AA+A+++T + P+ + +DD V++ P I +P
Sbjct: 139 DNVVTDHDGNLFDACSYAAVAAIITSKIPKWEM--KDDKPVLIEDQASDTP----ITTIP 192
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
I+VT G +++DP E + ++T T N++G++ A+QK G +G +++C
Sbjct: 193 ISVTMGLMG--EFIIVDPNLDEWECLDARITITTNSDGNIVALQKGGSDGFSLEQLVKCS 250
Query: 260 RLASRMASDITKKIKDAVE 278
L+ + I IK A E
Sbjct: 251 ELSIAIGKKIRDIIKQATE 269
>gi|171185833|ref|YP_001794752.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum neutrophilum
V24Sta]
gi|170935045|gb|ACB40306.1| 3' exoribonuclease [Pyrobaculum neutrophilum V24Sta]
Length = 273
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 134/226 (59%), Gaps = 10/226 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I+ L++ R+DGR P R + I+ G DGS+EV+LG+TH++ V L QP+ D
Sbjct: 20 IKRLLATRYRVDGREPERVRSVEIRTGVVKTADGSAEVKLGRTHVVAGVKVGLGQPFPDA 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+EG L + E P A P E G P ESA+EL R+VDRG+R VD + L V GK +
Sbjct: 80 PDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGK-AY 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ +DL+++++ GNLVDAAN+AA+A+L + P + + + + PLP+ +
Sbjct: 139 ILWVDLYVINDDGNLVDAANLAAVAALKNTQLPAVV----KEEQGVKLDRNNKTPLPVDL 194
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
+ PIAV+ G S+L++DPT EE + G++T T++ + V A
Sbjct: 195 NKAPIAVSIGKIG--SVLLLDPTLEEELSLDGRITFTISEDRIVAA 238
>gi|440896423|gb|ELR48345.1| Exosome complex exonuclease RRP43, partial [Bos grunniens mutus]
Length = 291
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 10/270 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 21 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEF 80
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + SP+ F +G P E A + + + S+ + E LC+
Sbjct: 81 GAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 140
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+GKL W + DL L++ GN++DA A LA+L + PE ++ E L + +
Sbjct: 141 SSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 196
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-G 247
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPG G
Sbjct: 197 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPGSG 255
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 256 SGLTGAKLQDCMSRAVTRHKEV-KKLMDEV 284
>gi|119628984|gb|EAX08579.1| exosome component 8, isoform CRA_a [Homo sapiens]
Length = 316
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 10/269 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 48 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 107
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 108 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 167
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 168 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 223
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KP G
Sbjct: 224 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKP-GI 281
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 282 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 309
>gi|221114702|ref|XP_002157039.1| PREDICTED: exosome complex component RRP42-like [Hydra
magnipapillata]
Length = 279
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 140/279 (50%), Gaps = 7/279 (2%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFV 64
T L+ EK FI + + R DGR+ +YR ++++ G GS++V+L T+++ V
Sbjct: 3 TVMLSEEEKYFIVSGIEEDFRTDGRSCNDYRAITVQTGIISNTSGSAQVKLAGTNVLIGV 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ +P +PN G + F + S A P FE E A EL + S A+D E
Sbjct: 63 KAEISEPLPSKPNLGKVEFFVDCSANASPIFEGRGGDELAFELSAALQNTF--SGAIDLE 120
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
LC++ GK W + ID +L+ GGNL DA +IA A+L R P S+ GE + I
Sbjct: 121 KLCIIPGKACWILYIDALVLECGGNLFDALSIAVKAALHNTRIPTLSIIGEGAEKSIEVS 180
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+ P+ + ++P+ VT ++D T EE ++ ++N G+VC++QK
Sbjct: 181 DDPYNSTPIDVSNIPVLVTLNKVGER--YIVDATAEEEICSDAQLLVSINQKGNVCSVQK 238
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
G G+ ++ + L++ ++ + +++ +E E
Sbjct: 239 HGSGGINPDLLFEMLKVGRKIGRILNEQLNLVLEKQTEE 277
>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
DSM 4184]
gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
4184]
Length = 274
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 140/252 (55%), Gaps = 12/252 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K I L++ RIDGR P R + IK DGS+EV+LG+TH++ V L QP+
Sbjct: 17 KEQIRKLLATKYRIDGREPERIRNIEIKTSVIKTADGSAEVKLGKTHVVAGVKVSLGQPF 76
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P+EG L + E P A P E G P E A+EL R++DRG+R VD + L V GK
Sbjct: 77 PDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVIDRGIRHCGYVDFKKLVVEGGK 136
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
+ + +DL+++++ GNL+DAAN+AA+A+L + P D + + + PLP
Sbjct: 137 -AYVLWVDLYVINDDGNLIDAANLAAVAALKDTQLPVVV----KDEQGVKLDRNNKTPLP 191
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ + PIAV+ G +L +DPT EE + G++T T++ + + A+QK G Q
Sbjct: 192 IEVSKAPIAVSVGKIG--GVLFLDPTFEEELSLDGRITFTISED-RIVAVQKTIGTFTSQ 248
Query: 253 SVIMQCLRLASR 264
+ M L LA +
Sbjct: 249 ELEM-ALELAWK 259
>gi|405968426|gb|EKC33499.1| Exosome complex exonuclease RRP43 [Crassostrea gigas]
Length = 300
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 11/272 (4%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG 66
R T K + L +R DGR E R I G +GS+ V++G T +M +
Sbjct: 31 RGTARPKEYYRKFLEQEVRPDGRELGETRTTVINVGCLSTANGSALVKIGNTTVMCGIKA 90
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
+ +P + P G + E SPM P F G P E A L + + ++ S +D + L
Sbjct: 91 ECAKPKTEEPAHGFIVPNVELSPMCSPQFRPGMPGEQARVLSQFMLEVMKNSNCIDVKKL 150
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-DDLEVIVHPP 185
C+ G+LVW + D+ LD GGN+ DA ++ LA+L P L + D E P
Sbjct: 151 CIEPGRLVWTLYCDIVCLDYGGNVTDACVLSLLAALNNTVLPNVVLNKDTDKFEAF---P 207
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
++ L L P++ TF F E +L +DPT EE + G++T + + +C + KP
Sbjct: 208 DQSTTLQL--QSSPVSSTFAIFDDE-ILFVDPTAEEENLATGQLT-IVTTDDKLCMVHKP 263
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
GG + + C++ A ++ + I D +
Sbjct: 264 GGTPLTDQQLCLCIKQAFERTKEVLRLIDDTI 295
>gi|326914227|ref|XP_003203428.1| PREDICTED: exosome complex exonuclease RRP43-like [Meleagris
gallopavo]
Length = 291
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 129/271 (47%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +L
Sbjct: 22 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSITTADGSALVKLGNTTVICGVKAEL 81
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D N+G + E + F +G P E A + + + S+ + E LC+
Sbjct: 82 AAPAVDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQIIAKEDLCI 141
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + D+ LD GN++DA+ A LA+L + P ++ E L + +
Sbjct: 142 AEGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLPSVTINEETGLSEV----NLK 197
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ PL+I P+A +F F + LL++DPT EE + G +T + + +C++ KPGG
Sbjct: 198 QKNPLVIRKHPVATSFAIF-DDXLLIVDPTAEEEDLATGTVTVVTDEDDRLCSVHKPGGS 256
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ + + C+ A ++ K I +++
Sbjct: 257 PLTGAKLQDCISRAITRHKEVKKLIDKVIKS 287
>gi|84999936|ref|XP_954689.1| exosome complex exonuclease [Theileria annulata]
gi|65305684|emb|CAI74009.1| exosome complex exonuclease, putative [Theileria annulata]
Length = 322
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 148/292 (50%), Gaps = 26/292 (8%)
Query: 20 ETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
+ L +G+RIDGR+ Y +S+ F G+S + G T I V+ ++V+P +RPNEG
Sbjct: 25 QDCLKNGLRIDGRSLDSYLYVSVDFDGPPGNSLISFGNTVIFTCVSQEIVEPNSERPNEG 84
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L F + +E G+ ++ L ++ +ES +D E+LC+ +GK V A+R+
Sbjct: 85 FL-FFNVETSFTSECYEPGKTTDQEHNLIYFLENMFKESSCLDLETLCITSGKQVLALRV 143
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
+H+L + GNL+ A + +ALASLL +R+P L D+L + + PL I+H+P
Sbjct: 144 YVHVLQDDGNLLSACSFSALASLLHYRKPLMELS--DELNYSFYGLWHKGT-PLNIYHVP 200
Query: 200 IAVTFGFF-----------SSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
I VT SSE V++P E+ ++ ++ N G+V I K G
Sbjct: 201 ILVTVWLLETRDHSFLDHNSSEYTFVLEPNSFEQKLLKTQIIILFNQFGEVLWIYKNGST 260
Query: 249 GV----LQSVIMQCLRLASRMASDI-------TKKIKDAVETYNTERALRKI 289
V +S I + AS++ S + T+++K+ ++ N++ + I
Sbjct: 261 PVPLETFESAISASKQRASQLYSILMSELDKNTQELKNILKHINSQYPYKII 312
>gi|410915784|ref|XP_003971367.1| PREDICTED: exosome complex component RRP43-like [Takifugu rubripes]
Length = 276
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 130/270 (48%), Gaps = 15/270 (5%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPY 72
+RF L R DGR E+R ++ G DGS+ V++G T I+ + +L P
Sbjct: 15 RRF----LKENCRPDGRELLEFRPTTLNIGSISTADGSALVKVGNTTIICGIKAELATPT 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
+ P +G + + P+ F G P E A + + + S + T+ LCV GK
Sbjct: 71 VEAPGKGYIVPNVDLPPLCSSRFRPGPPGEPAQACSQFIADLIESSEIIQTDDLCVERGK 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
L W + DL LD GNL DA IA LA+L + PE + E L V+ E+R L
Sbjct: 131 LCWVLYCDLMCLDYDGNLRDACVIALLAALKNTQLPEAVISTETHLPVV--DLEKRHGLK 188
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ H P+A +F F ES L++DPT EE + ++T +CA+ KPGG +
Sbjct: 189 VCKH--PVASSFCIF-DESTLIVDPTDEEENLSTARITVVTEEGDRLCAVHKPGGMSLSG 245
Query: 253 SVIMQCLRLASRMASDITK---KIKDAVET 279
+ +C+ A+ +I K K+ +V+T
Sbjct: 246 QKLQECINRATVRQKEIQKLTDKVLSSVKT 275
>gi|380026683|ref|XP_003697074.1| PREDICTED: exosome complex component RRP43-like [Apis florea]
Length = 281
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 137/275 (49%), Gaps = 9/275 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
++ ++++ L+ +R DGR +R +S+ D S+ ++G T I+ + +L
Sbjct: 7 IIHPVKYLQDHLAQDVRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTIVCGIKSEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P + P G + E P+ P F G PS+ A + ++++ LR S A+D + LCV
Sbjct: 67 AVPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENILRNSAAIDLKELCV 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL ++ G+++DA A A+L T PE E I +
Sbjct: 127 YKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPEIFYNIETGHVSINSTKRIK 186
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P I LP+++TF F ++ LL+ DPT EE++ +GK+T +N +C I KPGG
Sbjct: 187 FP----IKALPVSITFAIFDNQ-LLIADPTDDEESLCLGKLTIVMNEE-KICCIHKPGGI 240
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ Q + ++ L + + A + I A+ T E
Sbjct: 241 PISQDIFLKSLIKSRKRAELVRSLIDSAISTMKQE 275
>gi|350425266|ref|XP_003494065.1| PREDICTED: exosome complex component RRP43-like [Bombus impatiens]
Length = 278
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV 69
++ ++++ L+ IR DGR +R +S+ D S+ ++G T ++ + +L
Sbjct: 8 IHPVKYLQDHLAQDIRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTVVCGIKAELA 67
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P + P G + E P+ P F G PS+ A + ++V+ LR S A+D + LCV
Sbjct: 68 APKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLVENILRNSAAIDLKDLCVY 127
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GKLVW + DL ++ G+++DA A A+L T PE +L + V V+ +
Sbjct: 128 KGKLVWVLYCDLVCINYDGSIIDACIGALTATLSTLTLPE-TLYNVETGRVSVNSTKR-- 184
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+ ++ LP+++TF F+ + LLV DPT EE++ +G++T +N +C I KPGG
Sbjct: 185 -IRFLVKALPVSITFAIFNDQ-LLVADPTDDEESLCLGRLTIVMNEE-KICCIHKPGGIP 241
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ Q + + L + A I I A+ T E
Sbjct: 242 ISQDLFSKSLSKCKKRAELIRSLIDAAISTIKQE 275
>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
Length = 1016
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 8/270 (2%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ 57
M ++ +++ +E FI+ + G+R DGR+ +YR + G GS+ + L
Sbjct: 749 MMNQINIIQKISPSEIYFIKQGVECGVRSDGRSRLDYRHFELDVGEIAHACGSARILLSN 808
Query: 58 THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
TH++ + + P D+PN G L+ E P A P FE + +EL + ++R L
Sbjct: 809 THVLVGIKADIGAPTTDKPNSGVLNYSVECCPSASPEFEGKGAEQLNIELAKQLERMLEN 868
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177
S +D ESL ++ G+ W + ID +LD+ GNL DA +I A+L R P + +
Sbjct: 869 S--LDLESLVIVPGRYCWNLHIDATVLDSDGNLFDALSIVTRAALFNTRLPTIKVVQGEH 926
Query: 178 LEVIVHPPEEREPL-PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
++ E+ + L I ++PI VT ++ L ID T EE M ++T +N
Sbjct: 927 EQIEFEVSEDSDTYQSLSIENVPICVTLTKVGTQFL--IDSTLEEELCMEARLTIGINKK 984
Query: 237 GDVCAIQKPGGEGVLQSVIMQCLRLASRMA 266
++C+IQK G G+ + + Q + +A +++
Sbjct: 985 SNICSIQKGGMNGLDANTVNQMINVAKQVS 1014
>gi|374724588|gb|EHR76668.1| exosome complex component RRP42 [uncultured marine group II
euryarchaeote]
Length = 261
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 20/222 (9%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +E R+++++ +GS++V +G T + V +L P+ DRP +G+L
Sbjct: 21 LRLDGRGRWEGREVTLETDCLYNAEGSAKVVMGGTIVYAGVKFELRTPWPDRPAQGSLMC 80
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
E P+A +E G PS ++ELGR+VDRG+RES +D ESLC++ G+ VW + ID+H+
Sbjct: 81 GAELRPVAHRKYEPGPPSPQSIELGRVVDRGIRESGCIDMESLCIVPGEKVWGVMIDIHV 140
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREPLPLIIHHLPIAV 202
L +GGN+ DA +AA+A+L T P GED L + PI
Sbjct: 141 LSDGGNIFDACGLAAIAALRTAVVPAQRFDVGED--------------YTLKVKGTPIMA 186
Query: 203 TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+F V DP+ EE ++ TL G + ++QK
Sbjct: 187 SFTRVGGR--YVYDPSEEEELGGDERIHITLGDEGHLHSLQK 226
>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
Length = 273
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 144/262 (54%), Gaps = 16/262 (6%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I +SSG+RIDGR P + R++SI DGS+E LG+T ++ V L QP+ D
Sbjct: 20 IRRLISSGVRIDGRTPDQLREVSITTNVVNTADGSAEALLGKTRVVAGVKVGLGQPFPDA 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+EG L + E P A P E G P E+A+EL R+VDRG+R S VD + L + K V+
Sbjct: 80 PDEGVLIVNAEILPHASPYSEIGPPDETAIELARVVDRGIRHSGFVDFKKLAIDQNK-VY 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ +DL++L++ GNLVDAAN+AALA+L + P +D+ V + + LP +
Sbjct: 139 VLWVDLYVLNDDGNLVDAANLAALAALRSTMLPSAV---KDETGVKLD-RNNKTALPSDL 194
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
PIAV+ G + L++DP EE + G++T T+ A + +IQK G
Sbjct: 195 SKAPIAVSIGKIDNR--LIVDPNFEEELSLDGRITVTI-AQDSIVSIQKTMG-----YFT 246
Query: 256 MQCLRLASRMASDITKKIKDAV 277
Q L A +A + K KD +
Sbjct: 247 EQELGQAVDLAYSVRDKFKDIL 268
>gi|119628986|gb|EAX08581.1| exosome component 8, isoform CRA_c [Homo sapiens]
Length = 275
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 9/271 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KP G
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKP-GI 240
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 241 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 271
>gi|340709348|ref|XP_003393272.1| PREDICTED: exosome complex component RRP43-like [Bombus terrestris]
Length = 278
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 140/274 (51%), Gaps = 9/274 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV 69
++ ++++ L+ IR DGR +R +S+ D S+ ++G T ++ + +L
Sbjct: 8 IHPVKYLQDHLAQDIRPDGRQFLSFRPISVNISSITHADSSAIFKIGNTTVVCGIKAELA 67
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P + P G + E P+ P F G PS+ A + ++++ LR S A+D + LCV
Sbjct: 68 APKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENILRNSAAIDLKDLCVY 127
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GKLVW + DL ++ G+++DA A A+L T PE +L + V V+ +
Sbjct: 128 KGKLVWVLYCDLVCINYDGSIIDACIGALTATLSTLTLPE-TLYNVETGRVSVNSTKR-- 184
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+ ++ LP+++TF F+ + LLV DPT EE++ +G++T +N +C I KPGG
Sbjct: 185 -IRFLVKALPVSITFAIFNDQ-LLVADPTDDEESLCLGRLTIVMNEE-KICCIHKPGGIP 241
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ Q + + L + A I I A+ T E
Sbjct: 242 ISQDLFSKSLSKCKKRAELIRSLIDAAISTIKQE 275
>gi|68483592|ref|XP_714249.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|68483865|ref|XP_714111.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|46435645|gb|EAK95022.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|46435802|gb|EAK95176.1| potential exosome component Rrp45p [Candida albicans SC5314]
gi|238883782|gb|EEQ47420.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 337
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 38/272 (13%)
Query: 11 LTVNEKRFIETALSSGIRID------GRNPF-EYRKLSIKFGR-EDGSSEVQLGQTHIMG 62
L++N+K ++ AL S IR+ G F ++R + IK GS E+ LG+T +M
Sbjct: 5 LSLNQKNYLIQALKSNIRLSTSTNTGGSRKFNQFRPIDIKLSNTRYGSVELSLGKTKVMV 64
Query: 63 FVTGQLVQPYRDRPNEGTLSIFTE------FSPMADPSFETGRPSESAVELGRIVDRGLR 116
+T ++ +PY+DRP EG ++I E + E + R +DR +R
Sbjct: 65 NITSRITEPYQDRPFEGIMTINCEIPNHIKLQSNDTTNNNNDNEDEFINLINRALDRAIR 124
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL---- 172
S AVD E+LC++AG+ VW + IDL +L+ GNL+D+ +A + +LL F++P+ ++
Sbjct: 125 RSNAVDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFKKPDVTINNNN 184
Query: 173 ------GGEDDLEVIVHPPEEREP-LPLIIHHLPIAVTFGFFS-------------SESL 212
+IVH E + P + L I H+PI +TF F+ + +
Sbjct: 185 TSNSSSTSGGGGNIIVHDDEMKRPFIELSILHIPICLTFSLFNLGSKETNLKTNDIDQEI 244
Query: 213 LVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
++D EE+ G + T+N N ++ + K
Sbjct: 245 WLLDGDAMEESCRDGYLIMTMNQNHELIQLSK 276
>gi|387915884|gb|AFK11551.1| exosome complex component RRP43 [Callorhinchus milii]
Length = 291
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 10/272 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRKFLKENCRPDGRELGEFRTTTLNIGSITTADGSALVKLGNTTVVCGIKMEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D PN+G + + P+ F G P E A + + + S+ + E LC+
Sbjct: 67 AVPTVDAPNKGYVVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIENSQFLQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL-EVIVHPPEE 187
GKLVW + D+ LD GNL+DA IA LA+L + P S+ E L EV ++ +
Sbjct: 127 EKGKLVWVVYCDMMCLDYDGNLLDACIIALLAALKNVQLPPVSISVETGLAEVDMNQKNQ 186
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
L I P+A +F F +++ ++DPT EE + G T ++ +CA+ KPGG
Sbjct: 187 -----LNIRKHPVATSFAIF-DDTIFIVDPTAEEETLASGMATIVVDEEDRLCAVHKPGG 240
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G + C+ A ++ K + + +++
Sbjct: 241 SGASGEKLQDCIVRAQTRHREVYKLLSEVMKS 272
>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 259
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 151/270 (55%), Gaps = 21/270 (7%)
Query: 11 LTVNEKR-FIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTG 66
+ V+ KR ++ + L RIDGR E+RK+ I + +GS+ V+LG T ++ V
Sbjct: 5 ILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKM 64
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
Q +P D P+ G + + E P+A P+FE G P E+++EL R+VDRG+RES AVD L
Sbjct: 65 QPGEPAPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPP 185
+ G+ VW + +D+H LD+ GNL+DA+ +AA+A+L+ + P GED L
Sbjct: 125 VIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYL------- 177
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
LP + LP++VT ++ L +DP+ E +V +T T + + +V A+QK
Sbjct: 178 -----LP--VRDLPVSVTSLIVGNKYL--VDPSREEMSVGDTTLTITTDKDDNVVAMQKS 228
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKD 275
GG + + + + L ++ A + +K K+
Sbjct: 229 GGYLLDEKLFDELLDVSINCARKLREKFKE 258
>gi|196005309|ref|XP_002112521.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
gi|190584562|gb|EDV24631.1| hypothetical protein TRIADDRAFT_25085, partial [Trichoplax
adhaerens]
Length = 266
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 135/261 (51%), Gaps = 8/261 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
T+ K F + ++ IR D R ++RK ++ G +GS+ V++G T ++ + +
Sbjct: 3 TLRPKEFYDRFIAENIRPDRRTFKQFRKTTVNVGSITTANGSALVKIGNTTMLCGIKTEF 62
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F G P E A + + ++ ++ + LC+
Sbjct: 63 AVPKLDSPDHGYIVPNVDLPPLCSYRFRPGPPGEQAQVCSQYLADIIKSCNLINLKDLCI 122
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+ KL W I IDL LD GN++DA+ IA LA+L + + P+ + E D ++ +
Sbjct: 123 VKEKLAWVIYIDLLCLDCDGNVLDASVIAMLAALRSAKFPKVEIDEEVDKPIV----SKD 178
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
E L ++ PI+ TF F ++L++ DPT EE + G +T T+N + + + KPGG
Sbjct: 179 ESFSLNVNDCPISSTFVLF-DKNLILADPTSEEENLSSGYLTITVNNDDGLSNVLKPGGR 237
Query: 249 GVLQSVIMQCLRLASRMASDI 269
GV + + +C+ LA + A D+
Sbjct: 238 GVNDAELNECITLAIKRARDM 258
>gi|355686810|gb|AER98194.1| exosome component 8 [Mustela putorius furo]
Length = 246
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 8/242 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + D+ LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLPEVTINEETGLAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 241
Query: 249 GV 250
G+
Sbjct: 242 GL 243
>gi|301109940|ref|XP_002904050.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
gi|262096176|gb|EEY54228.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
Length = 283
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 135/259 (52%), Gaps = 8/259 (3%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
++ L++ +R D R R + ++ SS V+LG+T ++ + + P
Sbjct: 26 YMRKCLANKVRPDTRTIEATRAVQLQTDVIQTAASSSLVKLGKTSVLTAIKLAVGTPAVA 85
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P++G L+I SP+ F GRPSE A +G + R + SR V+ ESL ++ G+
Sbjct: 86 TPDQGELAIQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRVIAGSRVVEMESLSIVKGQSA 145
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W + +D++ +D+ GN++DAA + +A+L T + P S+ D++ IV + + PL
Sbjct: 146 WKLMVDVYGVDHDGNVLDAALTSIIAALKTLKLPATSVNEVDNVVSIV---PDGDATPLR 202
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ H A +F + +++IDPT EE + + + + +G +C + K GG V SV
Sbjct: 203 VEHGAYATSFAMV--DDVVLIDPTSAEEGLSSAVFSLSYSTDGQLCGVHKAGGSIVAPSV 260
Query: 255 IMQCLRLASRMASDITKKI 273
+ QC+ +A R ++ K +
Sbjct: 261 MQQCMTIAKRNTKELAKLV 279
>gi|432111599|gb|ELK34704.1| Exosome complex component RRP43 [Myotis davidii]
Length = 307
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 9/271 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV F L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 39 TVEPLEFYRRFLKENCRPDGRELGEFRTTTVNIGSVSTADGSALVKLGNTAVICGIKAEF 98
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 99 AAPPPDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIPKEDLCI 158
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L V+ ++R
Sbjct: 159 SPGKLSWVLYCDLICLDYDGNILDACTCALLAALKNVQLPEVTINEETALAE-VNLKKKR 217
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KP G
Sbjct: 218 Y---LNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKP-GI 272
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + CL A +I K + + +++
Sbjct: 273 GLTGAKLQDCLSRAVTRHKEIKKLMDEVIKS 303
>gi|193664372|ref|XP_001942983.1| PREDICTED: exosome complex exonuclease RRP43-like [Acyrthosiphon
pisum]
Length = 267
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 128/252 (50%), Gaps = 10/252 (3%)
Query: 28 RIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR +R S+ DGS+ V++G T ++ + +L P + P+ G L +
Sbjct: 22 RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKAEAPDIGYLLVN 81
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E + G P + A+++ ++ + +D + LC+ KLVW + D++ L
Sbjct: 82 IELPSLCSKKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWILSCDIYCL 141
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
+ G+++DA IA L++L T + PE E + ++ +PL ++ LP++ TF
Sbjct: 142 NYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVI-----ENYIPLKVNSLPVSSTF 196
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
G F+ + +L DPT EE + V K+T N + + ++ KPGGE + S I C++ A+
Sbjct: 197 GVFNEKYILA-DPTEEEEQLCVSKLTVVTNGSL-IFSLHKPGGEFIKDSQIQNCIKHANN 254
Query: 265 MASDITKKIKDA 276
A I + IK A
Sbjct: 255 RAKTICQLIKAA 266
>gi|290998465|ref|XP_002681801.1| predicted protein [Naegleria gruberi]
gi|284095426|gb|EFC49057.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 139/267 (52%), Gaps = 14/267 (5%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLG-QTHIMGFVT 65
+L+ EK FI + +R DGR +YR S++ G + +GS+ V+L T ++ V
Sbjct: 3 KLSQTEKHFIIDGVEQNMRNDGRARLDYRDFSLETGIVSQTNGSARVKLANHTDVLVGVK 62
Query: 66 GQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTES 125
++ + +D P++G L + E SP A+ FE E EL + L+ S AVD
Sbjct: 63 VEIGEVDQDFPDQGRLEVHVECSPSANNEFEGRGAEEINAELISTLRNQLKNSFAVDWTK 122
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEVI 181
LC++ GK W + +D +LD+ GNL DA IA A+L R P+ + E + EV
Sbjct: 123 LCIVKGKQCWILYVDCIVLDSAGNLFDALAIATRAALYNTRIPKIEVMEISPTETEFEVS 182
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
P E + ++PI+VT G S+ ++DP+ EE + +MT ++N G +C+
Sbjct: 183 DDPHEYSR---IDCSNIPISVTLGKIGSK--FIVDPSLEEEECISNRMTVSVNKKGHICS 237
Query: 242 IQKPGGE-GVLQSVIMQCLRLASRMAS 267
I+K G + GV S + + L+ A ++ S
Sbjct: 238 IKKSGKDSGVNPSELTKMLQTARKIGS 264
>gi|56118510|ref|NP_001007919.1| exosome component 8 [Xenopus (Silurana) tropicalis]
gi|51513372|gb|AAH80360.1| exosc8 protein [Xenopus (Silurana) tropicalis]
gi|89269528|emb|CAJ82996.1| exosome component 8 [Xenopus (Silurana) tropicalis]
Length = 276
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 10/276 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R +I G DGS+ V+LG ++ V +
Sbjct: 7 TVEPLEYYRKFLKEACRPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D PN+G + + +P+ F G P E A + + + S+ + E LC+
Sbjct: 67 TAPPADAPNKGYVVPNVDLTPLCSSQFRPGPPGEEAQVASQFIADVIDNSQMLLKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL-EVIVHPPEE 187
GKL W + DL LD GNL+D A +A+L R P + E L EV + +
Sbjct: 127 AHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEVNL---KT 183
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ L ++ H P+A +F F ++ L++DPT EE + G +T + + +CA +KPGG
Sbjct: 184 KHALKILKH--PVATSFAVF-DDTFLLVDPTGEEEGLASGLLTVVTDEDERLCATRKPGG 240
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ + +C+ A ++T +++A+ + +E
Sbjct: 241 SALAAEKLQECISRAITRHKEVTNLLQEALASVKSE 276
>gi|148225933|ref|NP_001079391.1| exosome component 8 [Xenopus laevis]
gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis]
gi|76779666|gb|AAI06634.1| MGC52847 protein [Xenopus laevis]
Length = 276
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 8/275 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R +I G DGS+ V+LG ++ V +L
Sbjct: 7 TVEPLEYYRRFLKEACRPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + +P+ F G P E A + + + S+ + E LC+
Sbjct: 67 AAPPADSPDKGYVVPNVDLTPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GNL+D A +A+L R P + E L + +
Sbjct: 127 AHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLPSVKINEETGLAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L I P+A +F F SLLV DPT EE++ G +T + + +CA +KPGG
Sbjct: 183 TKCALKILKHPVATSFALFDDTSLLV-DPTGEEESLASGLLTVVTDEDERLCATRKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ + +C+ A ++T +++A+ + +E
Sbjct: 242 ALSAEKLQECISRAITRHKEVTNLLQEALASVKSE 276
>gi|239790360|dbj|BAH71746.1| ACYPI003501 [Acyrthosiphon pisum]
Length = 267
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 10/252 (3%)
Query: 28 RIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR +R S+ DGS+ V++G T ++ + +L P + P+ G L +
Sbjct: 22 RNDGRELMNFRDASLNLNTIHTADGSAVVKIGNTAVVCGIKAELGVPKAEAPDIGYLLVN 81
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E + G P + A+++ ++ + +D + LC+ KLVW + D++ L
Sbjct: 82 IELPSLCSKKIRPGIPCDEAMQMTSFLNEVCNNCKILDLQQLCISVDKLVWVLSCDIYCL 141
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
+ G+++DA IA L++L T + PE E + ++ +PL ++ LP++ TF
Sbjct: 142 NYDGSVLDACLIALLSALQTVKIPEVKYDKETEETTVI-----ENYIPLKVNSLPVSSTF 196
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
G F+ + +L DPT EE + V K+T N + + ++ KPGGE + S I C++ +
Sbjct: 197 GVFNEKYILA-DPTEEEEQLCVSKLTVVTNGSL-IFSLHKPGGEFIKDSQIQNCIKHVNN 254
Query: 265 MASDITKKIKDA 276
A I + IK A
Sbjct: 255 RAKTICQLIKAA 266
>gi|409050427|gb|EKM59904.1| hypothetical protein PHACADRAFT_181840 [Phanerochaete carnosa
HHB-10118-sp]
Length = 287
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 134/264 (50%), Gaps = 10/264 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ K ++E L+ +R DGR P E+R +S+ G DGS+ V+LG T ++ V ++
Sbjct: 27 LHPKAYLERFLAENVRPDGREPTEWRDVSVNVGSISTADGSALVRLGDTTVVCGVKAEIA 86
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P D P +G L + + P F G PS+ A L ++ L + + T SLC+
Sbjct: 87 EPELDSPEDGFLVPNLDLPAICSPKFRPGPPSDEAQVLSDRLNETLVSTGVISTRSLCIE 146
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
+ K VW + +D ++ GN +DA +A +A+L R P+ + ED V+ +E
Sbjct: 147 SRKAVWVLYVDATCINYDGNALDATLVAMIAALQNTRLPKATF-DEDTGRVLCT---RKE 202
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
+PL I P++++FG F +L DPT EE ++ T T++ NG V ++ + G
Sbjct: 203 MIPLQISRFPLSMSFGVFDGTHILT-DPTSFEEPLLDTTFTVTVDENGGVISVVQLGLAS 261
Query: 250 VLQSVIMQCLRLASRMASDITKKI 273
Q V+ +C+ + K++
Sbjct: 262 --QDVLRKCIATTKSRYRQLAKQV 283
>gi|170039450|ref|XP_001847547.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167863024|gb|EDS26407.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 130/270 (48%), Gaps = 11/270 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ ++ + L S IR DGR + R L+I FG DGSS V++G T ++ + +L
Sbjct: 9 IHPVKYYKDHLESNIRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVVCGIKAELT 68
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P P G L E SP+ P + G PSE A + + S V+ + LC+
Sbjct: 69 PPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADAILNSGCVNLKDLCIT 128
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-DDLEVIVHPPEER 188
KLVWA+ DL LD+ G + DA+ IA +A+L T P + D+ EV+ P E
Sbjct: 129 KEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPRMRHNADTDEREVLEEEPREA 188
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L + +P+ +F +V DPT EEA+ +T T+ + + I K GGE
Sbjct: 189 ----LTLSSIPVTTSFAVLCGR--IVADPTAEEEALATSTITITI-CDATLSYINKSGGE 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVE 278
V Q ++ QC+ A + + IK V+
Sbjct: 242 PVEQELLDQCIENAMKREKSVRALIKTMVK 271
>gi|242007204|ref|XP_002424432.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
gi|212507832|gb|EEB11694.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
Length = 276
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 142/265 (53%), Gaps = 9/265 (3%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+ L+ G+R DGR E R +SI F DGS+ V++G T ++ V +L +P +
Sbjct: 13 FLNKVLAQGVRPDGRALDECRPISINVNSFHNADGSAIVKIGNTAVVCGVKLELAKPKAE 72
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P++G L + P+ ++ G P + A E + V+ L ES+ +D ++LC++ +L
Sbjct: 73 TPDQGYLIPNVDLPPLCSGQYQPGPPCDYAQEATKFVNEILLESQCIDLKALCIVPDRLA 132
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W I +D+ L+ GNL+DAA A +A+L PE E E +V+P + ++ L
Sbjct: 133 WVIYLDIICLNQDGNLLDAALAAGIAALKVTTLPEVIYNVESG-EKVVNPLKRQQ---LN 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN-GDVCAIQKPGGEGVLQS 253
+ LP++ T F S+ LL IDPT EE+ G ++ + A+ GD+C I +PG E + S
Sbjct: 189 VKKLPLSTTIAVFKSDCLL-IDPTVEEESFSSGTISIVIEADSGDICGIHQPGTEPLKPS 247
Query: 254 VIMQCLRLASRMASDITKKIKDAVE 278
I C+ A + + IK A++
Sbjct: 248 EIDFCITQAQVKTKAVAELIKTAIK 272
>gi|432896001|ref|XP_004076251.1| PREDICTED: exosome complex component RRP43-like [Oryzias latipes]
Length = 277
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 18/265 (6%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR E+R ++ G DGS+ V+LG T ++ + +L P + P +G
Sbjct: 18 LKENCRPDGRELSEFRTTTLNIGSISTADGSALVKLGSTTVICGIKAELANPTVEAPGKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
+ + P+ F G P E A + + + S + E LC+ GKL W +
Sbjct: 78 YIVPNVDLPPLCSSRFRPGPPGEQAQASSQFIADVIESSEIIKPEDLCIDRGKLCWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGG-----EDDLEVIVHPPEEREPLPLI 194
D+ LD GN++DA IA LA+L R P+ ++ E DL +ER LP
Sbjct: 138 DIMCLDYDGNILDACIIALLAALKNTRLPKVTVNKATCKPEIDL-------KERHELP-- 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+H P+ +F F +S+L++DPT EE++ +++ + +C++ KPGG +
Sbjct: 189 VHKHPVGTSFCIF-QDSILIVDPTADEESLSTSRLSVVTDEEERLCSLHKPGGTSLSAEK 247
Query: 255 IMQCLRLASRMASDITKKIKDAVET 279
+ C+ A+ +I K I+ + +
Sbjct: 248 LQTCINRATARQREIQKLIEKVLNS 272
>gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 126/267 (47%), Gaps = 12/267 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPY 72
+RF L R DGR E+R ++ G DGS+ V++G T I+ + +L P
Sbjct: 15 RRF----LKENCRPDGRELLEFRPTTLNIGSISTADGSALVKVGNTTIICGIKAELANPT 70
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
+ P +G + + P+ F G P E A + + + S + E LC+ GK
Sbjct: 71 VEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQACSQFIADLIESSEIIQPEDLCIERGK 130
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
L W + DL LD GNL DA IA LA+L + PE + E L V+ E++ L
Sbjct: 131 LCWVLYCDLMCLDYDGNLRDACVIALLAALKITQLPEAIISTETCLPVV--DLEKKRGLN 188
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ H P+ +F F ES L++DPT EE + ++T + +CA+ KPGG +
Sbjct: 189 IRKH--PVGSSFCIF-DESTLIVDPTDEEENLSTAQITVVTDEGDGLCAVHKPGGVSLSG 245
Query: 253 SVIMQCLRLASRMASDITKKIKDAVET 279
+ +C+ A+ +I K I + +
Sbjct: 246 EKLQECINRATVRQKEIQKLIDKVINS 272
>gi|170056939|ref|XP_001864258.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167876545|gb|EDS39928.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 130/270 (48%), Gaps = 11/270 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ ++ + L S IR DGR + R L+I FG DGSS V++G T ++ + +L
Sbjct: 9 IHPVKYYKDHLESNIRPDGREVGDLRPLAINFGSITSADGSSIVKIGNTTVVCGIKAELA 68
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P P G L E SP+ P + G PSE A + + S V+ + LC+
Sbjct: 69 PPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADAILNSGCVNLKDLCIT 128
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-DDLEVIVHPPEER 188
KLVWA+ DL LD+ G + DA+ IA +A+L T P + D+ EV+ P E
Sbjct: 129 KEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPRMRHNADTDEREVLEEEPREA 188
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L + +P+ +F +V DPT EEA+ +T T+ + + I K GG+
Sbjct: 189 ----LTLSSIPVTTSFAVLCGR--IVADPTAEEEALATCTITITI-CDATLSYINKSGGD 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVE 278
V Q ++ QC+ A + + IK V+
Sbjct: 242 PVEQELLDQCIENAMKREKSVRALIKTMVK 271
>gi|348667912|gb|EGZ07737.1| hypothetical protein PHYSODRAFT_529521 [Phytophthora sojae]
Length = 283
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 134/259 (51%), Gaps = 8/259 (3%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
++ L+S +R D R R + ++ SS V+LG+T ++ + + P
Sbjct: 26 YVRKCLASKVRPDSRTIEAARAVQLQTDVVQTAASSSLVKLGKTSVLTAIKLAVGTPAVA 85
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P++G +++ SP+ F GRPSE + + + R + SR V+ ESL ++ G+
Sbjct: 86 TPDQGEIAVQVHLSPLCSNRFSVGRPSEESQSISSQLTRIIVGSRVVEMESLSIVKGQSA 145
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W + +D++ +D+ GN++DAA + +A+L T + P S+ D++ IV P+E + PL
Sbjct: 146 WKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPATSVNEADNVVSIV--PDE-DATPLR 202
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ H A +F E ++IDPT EE + + + + NG +C + K GG V V
Sbjct: 203 VEHCAYATSFAVV--EDSVLIDPTSDEEDLASAVFSLSYSTNGQLCGVHKAGGTIVAPHV 260
Query: 255 IMQCLRLASRMASDITKKI 273
+ QC+++A R + K +
Sbjct: 261 MQQCMQVAKRNTEALAKLV 279
>gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
Length = 277
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 126/266 (47%), Gaps = 10/266 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR E+R ++ G DGS+ V++G ++ + +L P D P++G
Sbjct: 18 LKENCRPDGRELGEFRPTTLNTGSISTADGSALVKIGNATVICGIKAELATPTADAPDKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
+ + P+ F G P E A + + + +S + E LC+ KL W +
Sbjct: 78 YIVPNVDLPPLCSSRFRPGPPGEQAQVASQFIADIIDDSNIIKKEDLCIGKSKLCWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL-EVIVHPPEEREPLPLIIHHL 198
D+ LD GNL DA I LA+L + P+ ++ E DL EV V +R L I+
Sbjct: 138 DIMCLDYDGNLPDACIITLLAALKNAQLPKVTINKETDLPEVDVQ--HKRH---LQINKH 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
P+A +F F E ++++DPT EE++ +TA + N +CA KPGG + + C
Sbjct: 193 PVASSFAVFDDE-VIIVDPTTEEESLATALITAVTDENDQLCAFHKPGGSSLSAEKLQGC 251
Query: 259 LRLASRMASDITKKIKDAVETYNTER 284
+ A +I K I E+ + +
Sbjct: 252 ISRAVTRNREINKLIDRVTESIKSTK 277
>gi|156083393|ref|XP_001609180.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis T2Bo]
gi|154796431|gb|EDO05612.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis]
Length = 196
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 95/158 (60%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
+ AL G R+DGR + RK+ ++ G+ V LG T + V+ ++V P + P
Sbjct: 24 LVGNALLVGKRLDGRTSIQPRKIHVEQLANPGNVIVSLGDTIVFVAVSSEIVPPNVEHPT 83
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAI 137
EG ++ E SPM ++E G+ S+ E+ +++ ++S +D ESLC+++ K VW +
Sbjct: 84 EGIVTFSVELSPMCSLNYEPGKASDVEQEISYAIEKIYKDSGIIDVESLCIVSRKHVWCL 143
Query: 138 RIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE 175
R+++HIL N GNL+DA NIA +L+++R+P+ L G+
Sbjct: 144 RVNIHILQNDGNLLDATNIAVFKALMSYRKPDTQLNGD 181
>gi|70948509|ref|XP_743754.1| exosome complex exonuclease [Plasmodium chabaudi chabaudi]
gi|56523406|emb|CAH76566.1| exosome complex exonuclease, putative [Plasmodium chabaudi
chabaudi]
Length = 434
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 139/263 (52%), Gaps = 18/263 (6%)
Query: 87 FSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDN 146
FS D S + ++ +E+ +++R + S ++ ESLC++ K VW + I++ +++N
Sbjct: 11 FSAFNDIS----KITDECLEIKNLIERIFKASNILNFESLCIIPYKKVWCLLINITVIEN 66
Query: 147 GGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGF 206
GNL D+ ++A ++L+ FR ++ D+ ++ EE L +H+ PI TF +
Sbjct: 67 DGNLYDSCYLSAYSALVHFRNNSVNI---DNAGNVIIDEEEVNYSSLSVHNSPILTTFAY 123
Query: 207 FSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMA 266
F+ E + +IDP+ +EE M K++ +N NG++ +I KPGG + I+ + LA +
Sbjct: 124 FNFEEICLIDPSSYEEEFMSSKLSIAINKNGNLISILKPGGLPISYDKILHGIELAKKRV 183
Query: 267 SDITKKIKDAVETYNTER-ALRKIKRH------PTSITLDGSVNLKEKLNEPSGHNVVNE 319
I K ++DA++ N R L+K H P I DG +++ L+ V+N
Sbjct: 184 KSILKILEDALKEDNDLRNNLKKKNLHIKYSSNPVHIKYDGDDIVEKSLDVTINQTVINN 243
Query: 320 LS----RKHLEKPRLASAENASS 338
L+ K E+ L++ +N ++
Sbjct: 244 LNIDKIVKKYEQYMLSNPDNFTN 266
>gi|148230376|ref|NP_001088781.1| uncharacterized protein LOC496046 [Xenopus laevis]
gi|56269196|gb|AAH87445.1| LOC496046 protein [Xenopus laevis]
Length = 276
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 125/275 (45%), Gaps = 8/275 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R +I G DGS+ V+LG ++ V +
Sbjct: 7 TVEPLEYYRRFLKEICRPDGRELTEFRTTTINVGSITTADGSALVKLGNCTVLCGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D PN+G + + SP+ F G P E A + + + S+ + E LC+
Sbjct: 67 AAPPADAPNKGYVVPNVDLSPLCSSQFRPGPPGEEAQVASQFMADVIDNSQMLLKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GNL+D A +A+L R P + E L + +
Sbjct: 127 RHGKLAWVLYCDLICLDYDGNLLDTCTCALVAALQNVRLPSVKINEETGLAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L I PIA +F F + LL DPT EE++ G +T + + +CA QKPGG
Sbjct: 183 TKCALKILKHPIATSFAVFDDKFLLA-DPTGEEESLARGLLTVVTDEDERLCATQKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ + +C+ A ++T +++A+ + E
Sbjct: 242 SLSAEKLQECISRAITRHKEVTTLLQEALASAKPE 276
>gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 264
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 21/222 (9%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R GR +E R ++ G R +GS+ V++G T + V Q++ PY DRPN+G L
Sbjct: 23 RHSGRGRWEARDTELEIGVLPRAEGSARVRMGDTIVYAGVKLQIMVPYPDRPNQGGLMCS 82
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
E P+A P++E G PS ++ELGR+VDRG+RES +D + LC++ G+ W + +DL +
Sbjct: 83 AEVRPVAGPNWEPGPPSPESIELGRVVDRGIRESGCIDVDGLCLIPGEKAWQVILDLFAI 142
Query: 145 DNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAV 202
+ GNL DA +A +A++ T PE + GED PL I PI
Sbjct: 143 SDDGNLFDAFALAGIAAMRTAMIPEERFEISGEDR--------------PLNISKTPIMC 188
Query: 203 TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
++ V D EE ++ TL +G V ++QK
Sbjct: 189 SYHKVGGR--FVYDADGREELGGDERIHITLGDDGHVHSLQK 228
>gi|72389791|ref|XP_845190.1| ribosomal RNA processing protein 45 [Trypanosoma brucei TREU927]
gi|62360049|gb|AAX80471.1| ribosomal RNA processing protein 45 [Trypanosoma brucei]
gi|70801725|gb|AAZ11631.1| ribosomal RNA processing protein 45 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 363
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 142/328 (43%), Gaps = 65/328 (19%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++S++F V+ G + + + LV
Sbjct: 15 LTQREVEFTKSAWLAGLRPDQRTAQQMREVSVEFPLLSRDVVVVRCGGSVVTAAIATALV 74
Query: 70 QPYRDRPNEGTLS-----IFTEF-SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
+P RP G L + TE SP AD S + L ++R +R +DT
Sbjct: 75 EPTPQRPKHGLLHFSVRRLHTERDSPAADGSTQKN--------LVAFLERLVRTGGVIDT 126
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
LCVL G+ VW++ +D+ I+++ GN DAA A +A L+ RRPE ++ G VIVH
Sbjct: 127 AGLCVLPGQKVWSLTVDVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSS---VIVH 183
Query: 184 PPEEREPLPLIIHHLPIAVTFGF------------------------------------- 206
PP EREP+PL + H P+ TF
Sbjct: 184 PPHEREPVPLSVQHTPLPFTFAITMAPTEREKALNHQRALSATGSSSGPQPSSGVGNSID 243
Query: 207 ---------FSSESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIM 256
S + L +V+DPT E + +NA G VC + K G + +
Sbjct: 244 TASAFAIDGTSPQPLGVVVDPTTAESLAAASSIVVAINAEGQVCTVVKAEGCSIHLKDLN 303
Query: 257 QCLRLASRMASDITKKIKDAVETYNTER 284
C+ A +A + IK A+E ++ R
Sbjct: 304 ACIEAAGTLAPRVLDLIKVAMEAHDERR 331
>gi|350413287|ref|XP_003489947.1| PREDICTED: exosome complex component RRP42-like [Bombus impatiens]
Length = 291
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 132/275 (48%), Gaps = 12/275 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + + R DGR EYR + I+ + GS+ +++G T I+ + +
Sbjct: 6 LSSGEKTFILHGIDADFRNDGRRRCEYRSMEIETKLMPQTHGSARLRIGNTDILVGIKIE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L P+ DRPNEG L F + S A P+FE + A E+ I+ + A D +LC
Sbjct: 66 LDVPHADRPNEGKLEFFVDCSATATPAFEGKGGDDLATEISNILTAAYQTRNAFDLRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+L K W I +D+ IL GGNL DA I A+L + P+ + GGE D+E+
Sbjct: 126 ILPHKKCWKIYVDILILQCGGNLFDAVGITVKAALNSTEIPKITAATLDGGEPDIEL--- 182
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
+ + + L + PI VT ++DPT EE + ++ NG V ++
Sbjct: 183 SDDAYDCIQLDTSNYPIIVTLCKIGDN--YIVDPTSEEEVCSASSIVMSVLPNGKVSSVI 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
K G + + ++ L++ + + K + A++
Sbjct: 241 KLGYGSIQSNTFIKMLQMGKNIGLQLNKSLMKALK 275
>gi|298705981|emb|CBJ29102.1| similar to exosome component 6 [Ectocarpus siliculosus]
Length = 274
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 17/267 (6%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG-----REDGSSEVQLGQTHIMGFVTGQLVQ 70
+RF++ +G+R DGR R +S+ G R S+ V LG T ++ ++ Q+
Sbjct: 16 RRFVK----NGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGH 71
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P + P G L + + +P++ F +GRPSE A L V + ES A+ L +
Sbjct: 72 PSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDD 131
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G W + +D+ L GNL DA IAA+ +L+ + P D E+ V E P
Sbjct: 132 GAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTR---RIDDEIFV---TEDTP 185
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
L++ +P+ +T G F + +++ DP+ EE ++ +T + G VC + KPGG
Sbjct: 186 TQLVVREVPVPLTCGVF--DGIIIADPSLLEEELLTTHVTVVSTSEGKVCGVHKPGGSCA 243
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAV 277
+ +CL+L + A +T+ + AV
Sbjct: 244 SGKQLNECLQLCQQHAKQLTQTLAAAV 270
>gi|261328578|emb|CBH11556.1| ribosomal RNA processing protein 45 [Trypanosoma brucei gambiense
DAL972]
Length = 363
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 142/328 (43%), Gaps = 65/328 (19%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++S++F V+ G + + + LV
Sbjct: 15 LTQREVEFTKSAWLAGLRPDQRTAQQMREVSVEFPLLSRDVVVVRCGGSVVTAAIATALV 74
Query: 70 QPYRDRPNEGTLS-----IFTEF-SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
+P RP G L + TE SP AD S + L ++R +R +DT
Sbjct: 75 EPTPQRPKHGLLHFSVRRLHTERDSPAADGSTQKN--------LVAFLERLVRTGGVIDT 126
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
LCVL G+ VW++ +D+ I+++ GN DAA A +A L+ RRPE ++ G VIVH
Sbjct: 127 AGLCVLPGQKVWSLTVDVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSS---VIVH 183
Query: 184 PPEEREPLPLIIHHLPIAVTFGF------------------------------------- 206
PP EREP+PL + H P+ TF
Sbjct: 184 PPHEREPVPLSVQHTPLPFTFAITMAPTEREKALNHQRALSATGSSSGPQPSSGVGNSID 243
Query: 207 ---------FSSESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIM 256
S + L +V+DPT E + +NA G VC + K G + +
Sbjct: 244 TASAFAIDGTSPQPLGVVVDPTTAESLAAASSIVVAINAEGQVCTVVKAEGCSIHLKDLN 303
Query: 257 QCLRLASRMASDITKKIKDAVETYNTER 284
C+ A +A + IK A+E ++ R
Sbjct: 304 ACIEAAGTLAPRVLDLIKVAMEAHDERR 331
>gi|444726907|gb|ELW67422.1| Exosome complex component RRP43 [Tupaia chinensis]
Length = 248
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 8/242 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRKFLKENCHPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A G+ ++ S+ + E L +
Sbjct: 67 AAPPTDTPDKGYIIPNVDLPPLCSSRFRSGPPGEEAQVAGQFTAYVIKNSQIIQKEDLFI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G + ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLARGTLMVVMDEEGKLCCLHKPGGS 241
Query: 249 GV 250
G+
Sbjct: 242 GL 243
>gi|431903093|gb|ELK09269.1| Exosome complex exonuclease RRP43 [Pteropus alecto]
Length = 281
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 124/257 (48%), Gaps = 9/257 (3%)
Query: 28 RIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR E+R ++ G DGS+ V+LG T ++ + + P D P++G +
Sbjct: 29 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEFAAPPTDAPDKGYVVPN 88
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+ P+ F +G P E A + + + S+ + E LC+ GKL W + DL L
Sbjct: 89 VDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLICL 148
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GN++DA A LA+L + PE ++ E L + ++ L I P+A +F
Sbjct: 149 DYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLKKKSCLNIRTHPVATSF 204
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
F ++LL++DPT EE + G +T ++ +C + KP G G+ + C+ A
Sbjct: 205 AVF-DDTLLIVDPTAEEEHLATGTLTVVMDEESKLCCLHKP-GIGLTGGKLQDCMSRAVT 262
Query: 265 MASDITKKIKDAVETYN 281
++ K + + +++
Sbjct: 263 RHKEVKKLMDEVIKSMT 279
>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 258
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 137/262 (52%), Gaps = 26/262 (9%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGRED---GSSEVQLGQTHIMGFVTGQLVQP--Y 72
+I+ G R D R ++R L I G D GS++ LG T ++ V +LVQ Y
Sbjct: 11 YIKELAKEGKREDSRGSMDFRDLKISRGVIDHAEGSAQADLGATKVLAGV--KLVQEDVY 68
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G L + E P+A +ETG PS A+ELGR+VDR +R +D +SL + GK
Sbjct: 69 EDTPDQGNLVVSAELLPLAAAEYETGPPSPEAIELGRVVDRAIRAGNCIDLKSLLLEEGK 128
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
W + +D+++L+ GNL DA+ IAA++++L R PE + G D + E++
Sbjct: 129 -AWTVYVDVYVLNFDGNLFDASVIAAMSAILDARVPEYADGKAD------YTKREKK--- 178
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV-- 250
L + ++ + TF LL DPT +EE M ++ T++ +G + + G G
Sbjct: 179 LKVDNVVSSTTFAKIGKAILL--DPTGNEELGMDARL--TISTDGKMIRAMQKGLAGSFS 234
Query: 251 ---LQSVIMQCLRLASRMASDI 269
++S+I + L+ + M I
Sbjct: 235 VEEIESLIAESLKKHAHMEKKI 256
>gi|14250910|emb|CAC39260.1| Rrp45p homologue [Trypanosoma brucei]
Length = 363
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 142/328 (43%), Gaps = 65/328 (19%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
LT E F ++A +G+R D R + R++S++F V+ G + + + LV
Sbjct: 15 LTQREVEFTKSAWLAGLRPDQRTAQQMREVSVEFPLLSRDVVVVRCGGSVVTAAIATALV 74
Query: 70 QPYRDRPNEGTLS-----IFTEF-SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
+P RP G L + TE SP AD S + L ++R +R +DT
Sbjct: 75 EPTPQRPKHGLLHFSVRRLHTEKDSPAADGSTQKN--------LVAFLERLVRTGGVIDT 126
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
LCVL G+ VW++ +++ I+++ GN DAA A +A L+ RRPE ++ G VIVH
Sbjct: 127 AGLCVLPGQKVWSLTVNVTIMNDEGNCNDAAVWAVIALLMHHRRPELTVRGSS---VIVH 183
Query: 184 PPEEREPLPLIIHHLPIAVTFGF------------------------------------- 206
PP EREP+PL + H P+ TF
Sbjct: 184 PPHEREPVPLSVQHTPLPFTFAITMAPTEREKALNHQRALSATGSSSGPQPSSGVGNSID 243
Query: 207 ---------FSSESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIM 256
S + L +V+DPT E + +NA G VC + K G + +
Sbjct: 244 TASAFAIDGTSPQPLGVVVDPTTAESLAAASSIVVAINAEGQVCTVVKAEGCSIHLKDLN 303
Query: 257 QCLRLASRMASDITKKIKDAVETYNTER 284
C+ A +A + IK A+E ++ R
Sbjct: 304 ACIEAAGTLAPRVLDLIKVAMEAHDERR 331
>gi|348541677|ref|XP_003458313.1| PREDICTED: exosome complex component RRP43-like [Oreochromis
niloticus]
Length = 277
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 10/255 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR E+R ++ G DGS+ V+LG T I+ + +L P + P +G
Sbjct: 18 LKENCRPDGRELTEFRTTTLNIGSISTADGSALVKLGNTTIICGIKAELANPTVEAPGKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
+ + P+ F G P E A + + + S + TE L + GKL W +
Sbjct: 78 YIVPNVDLPPLCSSRFRPGPPGEEAQAASQFIADVIESSEVIKTEDLSIDRGKLCWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL-EVIVHPPEEREPLPLIIHHL 198
DL LD GN++DA IA LA+L R PE ++ E EV + E L IH
Sbjct: 138 DLMCLDYDGNILDACVIALLAALKNTRLPEVTINKETSAPEVNLEKRWE-----LQIHKH 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
++ +F F +S+L+ DPT EE + +T + + +C++ KPGG + + +C
Sbjct: 193 LVSASFCIF-DDSILISDPTAEEETLSTAHLTVVTDEDDRLCSVHKPGGTSLSGERLQEC 251
Query: 259 LRLASRMASDITKKI 273
+ A+ +I K I
Sbjct: 252 ISRATTRQREIQKLI 266
>gi|66267273|gb|AAH95236.1| Exosome component 8 [Danio rerio]
Length = 277
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 8/265 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR E+R ++ DGS+ V++G T ++ + +L P + N+G
Sbjct: 18 LKENCRPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEAQNKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + P+ F G P E A + + + S ++ E LC+ KL W +
Sbjct: 78 YLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+ LD GNL+DA LA+L T + PE ++ E DL + + R L I+ P
Sbjct: 138 DIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRR----LKINRHP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ +F F +S++++DPT EE++ MT + +CA+ KPGG + + C+
Sbjct: 194 VGSSFAVF-DDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPGGTSLSGEKLQHCI 252
Query: 260 RLASRMASDITKKIKDAVETYNTER 284
A +I K + E+ T +
Sbjct: 253 NRAITRNKEIRKLLDKVHESTKTMK 277
>gi|50838810|ref|NP_001002865.1| exosome complex exonuclease RRP43 [Danio rerio]
gi|49618917|gb|AAT68043.1| Opa-interacting protein 2 [Danio rerio]
Length = 277
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 8/265 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR E+R ++ DGS+ V++G T ++ + +L P + N+G
Sbjct: 18 LKENCRPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEAQNKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + P+ F G P E A + + + S ++ E LC+ KL W +
Sbjct: 78 YLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+ LD GNL+DA LA+L T + PE ++ E DL + + R L I+ P
Sbjct: 138 DIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRR----LKINRHP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ +F F +S++++DPT EE++ MT + +CA+ KPGG + + C+
Sbjct: 194 VGSSFAVF-DDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPGGTSLSGEKLQHCI 252
Query: 260 RLASRMASDITKKIKDAVETYNTER 284
A +I K + E+ T +
Sbjct: 253 NRALTRNKEIRKLLDKVHESTKTMK 277
>gi|156230391|gb|AAI52249.1| MGC174638 protein [Danio rerio]
Length = 277
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 8/265 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR E+R ++ DGS+ V++G T ++ + +L P + N+G
Sbjct: 18 LKENCRPDGRELGEFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEAQNKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + P+ F G P E A + + + S +++E LC+ KL W +
Sbjct: 78 YLVPNVDLPPLCSSRFGAGPPGEQAQAASQFIADVIESSDLINSEELCIEKAKLCWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+ LD GNL+DA LA+L T + PE ++ E DL + + R L I+ P
Sbjct: 138 DIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRR----LKINRHP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ +F F +S++++DPT EE++ MT + +CA+ KPGG + + C+
Sbjct: 194 VGSSFAVF-DDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPGGTSLSGEKLQHCI 252
Query: 260 RLASRMASDITKKIKDAVETYNTER 284
A +I K + E+ T +
Sbjct: 253 NRAITRNKEIRKLLDKVHESTKTMK 277
>gi|302410689|ref|XP_003003178.1| exosome complex exonuclease RRP45 [Verticillium albo-atrum
VaMs.102]
gi|261358202|gb|EEY20630.1| exosome complex exonuclease RRP45 [Verticillium albo-atrum
VaMs.102]
Length = 271
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 132/257 (51%), Gaps = 36/257 (14%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+VNEK FI AL G+R+DGR +YR + I FG E G +V LG+T + +P
Sbjct: 8 SVNEKEFILKALHEGVRLDGRPFDQYRTIDISFGDEYGVVDVSLGKTS-----SPPSSRP 62
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+R R ++ SP P+ G R + + + S A
Sbjct: 63 WRRR-------TWSRASP----------PTRRCCCRGCSRRRSAAPAPSTWSRSASSPAP 105
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW++R D+H++ + GN+VDAA +AA+A+L FR+P+ + GED + V P EREP+
Sbjct: 106 K-VWSVRADVHVVSHDGNIVDAACLAAVAALRHFRKPDAQVEGED---LTVFTPAEREPV 161
Query: 192 PLIIHHLPIAVTFGFFSSE----------SLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
PL H P VTF F+++ + ++DP EE + V T +LN G+VC
Sbjct: 162 PLGWLHSPFCVTFAHFAAKDDSSPDHDGGDVTLLDPDWREEQLRVASCTISLNKLGEVCQ 221
Query: 242 IQKPGGEGVLQSVIMQC 258
+ K GG+ V + ++QC
Sbjct: 222 VSKLGGDAVEATTLLQC 238
>gi|449310642|gb|AGE92548.1| exosome complex exonuclease RRP45-like protein, partial [Leishmania
braziliensis]
Length = 304
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 131/278 (47%), Gaps = 61/278 (21%)
Query: 56 GQTHIMGFVTGQLVQPYRDRPNEGTLSI-----FTEFSPMADPSFETGRPSESAVELGRI 110
G T V+ LV+P RP G + E P+ D S E R S + L R+
Sbjct: 1 GNTVATATVSCDLVEPSPYRPKHGFFEVHARQLLHERDPL-DQSKEIKRIS---MYLTRL 56
Query: 111 VDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC 170
+ E TE LC++ G+ VW+I ++ I++N GN+ D A +A+L RRPE
Sbjct: 57 FTGSVLE-----TEGLCIIPGRRVWSIDAEVIIMNNDGNVQDVGQWAVMAALQHVRRPEL 111
Query: 171 SLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGF------------------------ 206
++ G+D VIVHPP EREP+PL +HH+P++ TF
Sbjct: 112 TIRGDD---VIVHPPHEREPVPLPLHHIPLSFTFAVCANPQEVQLAVRASTLRRGQAPRA 168
Query: 207 -------------------FSSESL-LVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+SS++L +V+DP E A ++ +N G VC+++K
Sbjct: 169 GASSDANVDEDDGEEKELGWSSDALQVVVDPALEEVAAAACTVSVAVNGEGHVCSLEKAD 228
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
G V S + +C+ A+++ + ++K+++E +N +R
Sbjct: 229 GCDVSISCLEKCMETATKLTQALLTQMKESMEAHNLKR 266
>gi|91081401|ref|XP_972667.1| PREDICTED: similar to exosome component 8 [Tribolium castaneum]
gi|270006123|gb|EFA02571.1| hypothetical protein TcasGA2_TC008282 [Tribolium castaneum]
Length = 271
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 136/267 (50%), Gaps = 12/267 (4%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++ L+ IR DGR EYR + + G DGS+ ++G+T ++ + +L QP
Sbjct: 12 KYFRDHLAHKIRPDGREFGEYRPIVVNLGSISTADGSAIAKVGRTTVVCGIKAELCQPKA 71
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ NEG L E P+ F G P+E A ++V L+ S +D ++LC+ KL
Sbjct: 72 EAANEGFLIPNVELPPLCSSKFRPGPPTEQAQVATQLVADILKNSDCLDLKTLCIFPDKL 131
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREPLP 192
W + DL LD G L+DA +A +A+L + P D+ +V V +ER+ L
Sbjct: 132 AWCLYADLICLDLDGALIDACVVALMAALKSVTLPAVQYDPALDNKQVNV---QERKALS 188
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
+ + PIA TF F + ++IDPT EE + +T + ++C + KPGG +
Sbjct: 189 --VTNTPIATTFAMFDDK--ILIDPTVDEEDLSTSLVTIVVKEE-ELCFVHKPGGCVFTE 243
Query: 253 SVIMQCLRLASRMASDITKKIKDAVET 279
+++C+ +++ A+ I + I+ A ++
Sbjct: 244 EQLLKCVEESTKRATVIEEIIETAFKS 270
>gi|157107418|ref|XP_001649768.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
43 [Aedes aegypti]
gi|108884054|gb|EAT48279.1| AAEL000659-PA [Aedes aegypti]
Length = 274
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 130/256 (50%), Gaps = 11/256 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ ++ + L IR DGR + R L+I F DGS+ V++G T ++ + +L
Sbjct: 9 IHPVKYYKDYLEHNIRPDGREIGDLRPLAINFDSIKTADGSAIVKIGNTTVVCGIKAELA 68
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P P+ G L E SP++ P + G PSE A + + S V+ + LC+
Sbjct: 69 PPKPVEPDTGYLVPNIEISPLSSPKYRPGPPSEEAQVYSCSLADAILNSGCVNLKDLCIT 128
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-DDLEVIVHPPEER 188
+LVWA+ DL LD+ G + DA+ IA +A+L T R P + D+ EV E+
Sbjct: 129 KEQLVWALYCDLVCLDHDGCIFDASVIALVAALHTLRLPPVKHNPDTDEREV----DEDA 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
E +PL ++ +P+ +F F ++ DPT EEA+ +T T+ + + I K GG+
Sbjct: 185 ERIPLKLNSIPVTTSFAVFGGR--IIADPTAEEEALATSTITITI-CDSTLSYINKSGGD 241
Query: 249 GVLQSVIMQCLRLASR 264
+ Q ++ +C+ A +
Sbjct: 242 PLEQELLDKCIENAMK 257
>gi|356559534|ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 140/276 (50%), Gaps = 19/276 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E FI+ ++ +R DGR YR +S++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++G +SI+ + S A+P+FE E A EL + R L ++ +D
Sbjct: 64 LGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDA--ANIAALASLLTFRRPECSLGGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+DA A I A S R + + G +D
Sbjct: 124 LSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND--- 180
Query: 181 IVHPP---EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG 237
HP + E L +P+ VT ++D T EE+ M ++ ++N G
Sbjct: 181 -EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRH--YIVDATSEEESQMSSAVSISVNRQG 237
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+C I K GG G+ S+I+ + +A ++ + K+
Sbjct: 238 HICGITKRGGVGLDPSIILDMISVAKHVSEQLINKL 273
>gi|356498705|ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 19/276 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E FI+ ++ +R DGR YR +S++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGETHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQTNGSARVRMGATDVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLR-----ESRAVD 122
L +P +P++G +SI+ + S A+P+FE E A EL + L E +D
Sbjct: 64 LGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQHCLLGGKSGEGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDA--ANIAALASLLTFRRPECSLGGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+DA A I A S R E + G +D
Sbjct: 124 LSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVEVAAGTSND--- 180
Query: 181 IVHPP---EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG 237
HP + E L +P+ VT ++D T EE+ M ++ ++N G
Sbjct: 181 -EHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRH--YIVDATSEEESQMSSGVSISVNRQG 237
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+C I K GG G+ S+I+ + +A ++ + K+
Sbjct: 238 HICGITKRGGVGLDPSIILDMISVAKHVSEQLINKL 273
>gi|443692453|gb|ELT94047.1| hypothetical protein CAPTEDRAFT_173435 [Capitella teleta]
Length = 277
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 131/271 (48%), Gaps = 12/271 (4%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR 73
RF+E +R DGR+ R ++ G DGS+ V+LG T I+ + ++V
Sbjct: 16 RFLE----QDVRPDGRDLGGIRPTTLNVGSIDTADGSALVKLGNTCILCGIKAEMVASNP 71
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P +G + PM+ P F P + A +++ L S +D + LC+ GK
Sbjct: 72 ETPEQGIVDSSVSLLPMSTPQFRDRPPVDLAPSCTHFIEQLLTCSGCLDLKDLCIEKGKH 131
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
W + DL LD GN++DA +A +A+L P+ ++ E + + +E PL
Sbjct: 132 AWNLHCDLMCLDYDGNVLDACCLALIAALKNTVLPKVTIDEESGTVKL----DAKEKHPL 187
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
++ +P++ T F ++ +L +DPT EE++ G +T + +C KPGG V S
Sbjct: 188 SVNAVPVSTTLAIF-ADKVLFVDPTQEEESLATGFITVVTKDDDHICMTYKPGGSSVQPS 246
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTER 284
+ C++ + ++ + I+ A+ T ER
Sbjct: 247 QMQDCIKRSQHRRPEVLQLIRQALLTVEAER 277
>gi|384486761|gb|EIE78941.1| hypothetical protein RO3G_03646 [Rhizopus delemar RA 99-880]
Length = 303
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 139/270 (51%), Gaps = 12/270 (4%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQ 70
+EK +IE + R DGR+ EYR + ++ G + GS+ +LG++ ++ V ++ +
Sbjct: 9 SEKSYIEEGIQHDCRADGRSRLEYRHMILETGLLSQASGSARCRLGESDVLVGVKVEIGE 68
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-VDTESLCVL 129
R +PN+G L + E SP A FE E L +DR ++ +D E LC++
Sbjct: 69 VERSQPNKGRLVLNVECSPSASQQFEGRGADEINNSLTMAIDRIFNGPQSGLDLEKLCII 128
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEVIVHPP 185
G+ W I ID ++D GNL+D + A+L R P+ + GE + EV+
Sbjct: 129 PGQQCWVIYIDAMVMDAAGNLLDCIVMTTRAALYNARIPKTEIQDLGEGEYEFEVM-DDV 187
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
E+ EP+ + +LPI+VT + +IDPT EE +T +N +G VC IQK
Sbjct: 188 EDAEPI-VGWENLPISVT--LYKIADRYIIDPTILEELCSQVTLTVGVNKDGAVCGIQKG 244
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKD 275
G + S++ + ++ A+ +A + +++ +
Sbjct: 245 GNGSIEPSLLTEMIQTATALAKPLIQQLDN 274
>gi|168041870|ref|XP_001773413.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675289|gb|EDQ61786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 287
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 135/266 (50%), Gaps = 13/266 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
++ E +IE ++ +R DGR ++R ++I G + +GSS ++G T +M V +
Sbjct: 4 ISAAEVSYIEGGIAQNLRSDGRGRLDFRNIAITTGVIPQANGSSRCKVGGTDVMVSVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLR-----ESRAVD 122
L P + RP+ G + I E SP A+P FE E ++EL R ++R A+D
Sbjct: 64 LGNPPKGRPSHGGMQIKVECSPTANPEFEGRGGEELSLELTRGLERSFLGGPNGSGAAID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSLGGEDDLEV 180
+L ++ GK W + ID +L + GNL+DA +IA A+L P E GG +D +
Sbjct: 124 LSTLRIVDGKTCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLPKVEVVAGGAEDEDP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
+ +E E L + + P+ +T +D T EE+ M ++ +N G VC
Sbjct: 184 EIEVDDE-ESSQLDVSNAPVIITLTKVGKSYF--VDATAEEESHMRSAVSVAVNRKGVVC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMA 266
+ K GGEG+ S I+ + +A ++A
Sbjct: 241 GVTKRGGEGLEPSTIIDMISVAQQIA 266
>gi|182889712|gb|AAI65543.1| Exosc8 protein [Danio rerio]
Length = 277
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 8/265 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR ++R ++ DGS+ V++G T ++ + +L P + N+G
Sbjct: 18 LKENCRPDGRELGKFRPTTLNINSISTADGSALVKIGNTTVICGIKAELAVPPSEAQNKG 77
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L + P+ F G P E A + + + S ++ E LC+ KL W +
Sbjct: 78 YLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLYC 137
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+ LD GNL+DA LA+L T + PE ++ E DL + + R L I+ P
Sbjct: 138 DIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRR----LKINRHP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
+ +F F +S++++DPT EE++ MT + +CA+ KPGG + + C+
Sbjct: 194 VGSSFAVF-DDSIIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPGGTSLSGEKLQHCI 252
Query: 260 RLASRMASDITKKIKDAVETYNTER 284
A +I K + E+ T +
Sbjct: 253 NRAITRNKEIRKLLDKVHESTKTMK 277
>gi|242097164|ref|XP_002439072.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
gi|241917295|gb|EER90439.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
Length = 286
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 138/267 (51%), Gaps = 15/267 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R LS++ G + +GS+ V+LG T I+ V +
Sbjct: 4 LSEGEKHFICGGIAQDLRTDGRRRLQFRALSVQTGVIPQANGSARVRLGATEIIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G +SIF + SP A+P FE GR SE + EL + R L + A+
Sbjct: 64 LGKPSILHPDKGKVSIFVDCSPTAEPMFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLE 179
D SL V+ GK+ W + ID ++ + GNL+DA A +L P+ S+ D E
Sbjct: 123 DLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSVNAASDEE 182
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V +E E L +P+ +T ++D T EE+ M ++ ++N NG +
Sbjct: 183 PEVDVSDE-EFLQFDTSSVPVIITLTKVGRH--YIVDATSEEESQMSSAVSVSVNRNGQI 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMA 266
C + K GG G+ SVI + +A ++
Sbjct: 240 CGLTKRGGAGLDPSVIFDMISVAKHVS 266
>gi|403418833|emb|CCM05533.1| predicted protein [Fibroporia radiculosa]
Length = 286
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 135/274 (49%), Gaps = 11/274 (4%)
Query: 4 RLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHI 60
R A RL + K ++E L+ +R DGR E+R +S+ G DGS+ V+LG T I
Sbjct: 17 RAATFQRL--HPKVYLERFLAENVRPDGRGFEEWRDVSVNVGSISTADGSALVRLGDTTI 74
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
+ V ++ +P D P +G L + + P F+ G P+E A L ++ L S
Sbjct: 75 VCGVKAEIAEPELDSPGDGFLVPNLDLPAICSPKFKPGPPTEEAQVLSDRLNEALIASGI 134
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
+ T SLC+ GK VW + +D ++ GN DA +A +A+L + PE + E
Sbjct: 135 LPTSSLCIARGKAVWVLYVDATCINYDGNAFDATLLAMVAALKNTQLPEATYDEETGRTT 194
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
++ PL + P +++FG F S +L DPT EE ++ ++ ++ NGD+
Sbjct: 195 CSRKVKQ----PLQLGRSPTSMSFGIFDSTHVLA-DPTSFEEPLLDTTLSVVVDENGDLV 249
Query: 241 AIQKPGGEGV-LQSVIMQCLRLASRMASDITKKI 273
++ + G V Q V+ QC+ A S I +I
Sbjct: 250 SVAQLGLTVVGGQDVLTQCIATAKENHSRIYSRI 283
>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 139/280 (49%), Gaps = 16/280 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +R D R E R ++ G GS+ V+LG T ++ + +++ P +
Sbjct: 30 FLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALVRLGDTAMLASIKLEVMSPPAE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P++G++++ P+ P GRP+E+A + + ++ L S ++ + LC+++GK
Sbjct: 90 TPDQGSVAVEFHMPPICSPLVRPGRPAEAAPVISKALEDVLMSSGMLNLKELCLISGKAS 149
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE------- 187
W +D++ L+ G+L DAA I+ +A+ P S+G DD V E
Sbjct: 150 WVAYLDVYCLNADGSLFDAALISVVAAFTHLEIPLVSVG--DDGRVFTVGGNEGKTKYEL 207
Query: 188 --REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
RE L + +P +T +++DPT EE+++ +T L+++G + +IQKP
Sbjct: 208 VNREKRKLTLGDIPFPLTCALHKDS--ILVDPTAEEESIIETSVTVVLDSSGRLVSIQKP 265
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285
GG + I C+ LA + + + D++E ++A
Sbjct: 266 GGGVTSMAAIKACIGLAKERGQKLKEILTDSIEAMEVDQA 305
>gi|242083100|ref|XP_002441975.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
gi|241942668|gb|EES15813.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
Length = 287
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 139/269 (51%), Gaps = 19/269 (7%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ IR DGR ++R LS++ G + +GS+ V+LG T I+ V +
Sbjct: 5 LSEGEKHFIHGGIAQDIRTDGRRRLQFRALSVQTGVIPQANGSARVRLGVTEIIASVKAE 64
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G +SIF + SP A+P FE GR SE + EL + R L + A+
Sbjct: 65 LGKPSILHPDKGKVSIFVDCSPTAEPMFE-GRGSEELSAELSAALQRCLLGGKSGSGAAI 123
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE----CSLGGEDD 177
D SL V+ GK+ W + ID ++ + GNL+DA A +L P+ S E++
Sbjct: 124 DLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSVSAASEEE 183
Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG 237
EV V + E L +P+ +T ++D T EE+ ++ ++N +G
Sbjct: 184 PEVNV---SDEEFLQFDTSGVPVIITLTKVGRH--YIVDATSEEESQTSSAVSVSVNRHG 238
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMA 266
+C + K GG G+ SVI+ L +A ++
Sbjct: 239 QICGLSKRGGAGLDPSVILDMLSVAKHVS 267
>gi|115485229|ref|NP_001067758.1| Os11g0311300 [Oryza sativa Japonica Group]
gi|113644980|dbj|BAF28121.1| Os11g0311300, partial [Oryza sativa Japonica Group]
Length = 300
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 137/279 (49%), Gaps = 16/279 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +R D R P E R ++ GS+ V+LG T ++ + +++ P +
Sbjct: 24 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 83
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++++ P+ P GRP+E A + + ++ L S ++ + LC+++GK
Sbjct: 84 APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKAS 143
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV---------HPP 185
W +D++ L+ G+L DAA I+A+A+ P S+G DD V +
Sbjct: 144 WLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVG--DDGRVFTVGGNEGKAKYEL 201
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
RE L I ++P ++T L DPT EE+++ +T L+++ + +IQKP
Sbjct: 202 VNREKRKLTITNVPFSLTCALHKDNVL--ADPTAEEESIIETSVTIVLDSSDQIVSIQKP 259
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
GG + I +C+ LA + + + D VE ++
Sbjct: 260 GGAVTSMTTIKECISLAKDRRRKLREILMDNVEAMEVDQ 298
>gi|340708517|ref|XP_003392871.1| PREDICTED: exosome complex component RRP42-like isoform 1 [Bombus
terrestris]
gi|340708519|ref|XP_003392872.1| PREDICTED: exosome complex component RRP42-like isoform 2 [Bombus
terrestris]
Length = 291
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 132/275 (48%), Gaps = 12/275 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + + R DGR EYR + I+ + GS+ +++G T I+ + +
Sbjct: 6 LSSGEKTFILHGIDADFRNDGRRRCEYRSMEIETKLMPQTHGSARLRIGNTDILVGIKIE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L P+ DR NEG L F + S A P+FE + A E+ I+ + A D +LC
Sbjct: 66 LDVPHADRSNEGKLEFFVDCSATATPAFEGKGGDDLATEISNILTAAYQTPNAFDLRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+L K W I +D+ IL GGNL DA IA A+L + P+ + GGE D+E+
Sbjct: 126 ILPHKKCWKIYVDILILQCGGNLFDAVGIAVKAALNSTEIPKITTATLDGGEPDIEL--- 182
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
+ + + L + PI VT ++DPT EE + ++ NG V ++
Sbjct: 183 SDDAYDCIQLDTSNYPIIVTLCKIGDN--YIVDPTSEEEVCSASSIVMSVLPNGKVSSVI 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
K G + + ++ L++ + + + + A++
Sbjct: 241 KLGYGSIQPNTFIKMLQIGKNIGLQLNESLMKALK 275
>gi|335296834|ref|XP_001927006.3| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP43-like [Sus scrofa]
Length = 246
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 39/269 (14%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGSS V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSSLVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + SP+ F +G P E A + + + S+ + E LC+
Sbjct: 67 GAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEEAQVASQFIADVIXNSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL L++ GN++DA A LA+L + PE ++
Sbjct: 127 SPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVNI---------------- 170
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ +LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 171 -------------------NXXTLLIVDPTEEEEHLATGTLTVVMDEEGKLCCLHKPGGS 211
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 212 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 239
>gi|380023350|ref|XP_003695486.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Apis florea]
Length = 290
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 133/278 (47%), Gaps = 12/278 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + + R DGR EYR + I+ + GS+ +++G T I+ + +
Sbjct: 6 LSSGEKTFILHGIDADFRNDGRRQCEYRSMEIETKLMPQTHGSARLRIGNTDILVGIKVE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L P+ D+PNEG L F + S A P+FE + A E+ I+ + A D +LC
Sbjct: 66 LDIPHADKPNEGKLEFFVDCSATATPAFEGKGGDDLATEISNILTAAYQTRNAFDLRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+L K W I +D+ IL GGNL DA I A+L + P+ + GGE D+E+
Sbjct: 126 ILPHKKCWKIYVDVLILQCGGNLFDAVGITVKAALNSTEIPKITAATLDGGEPDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + PI VT +IDPT EE + ++ +G + ++
Sbjct: 186 P---YDCIQLDTSNYPIIVTLCKIGDN--YIIDPTLEEEVCSASSIIMSVLPSGKISSVI 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYN 281
K G + S + L++ + ++ + + A++ N
Sbjct: 241 KLGYGSIQPSTFKKMLQMGENIGLNLNESLMKALKEEN 278
>gi|363543527|ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]
gi|195636336|gb|ACG37636.1| exosome complex exonuclease RRP42 [Zea mays]
Length = 287
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 139/267 (52%), Gaps = 15/267 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R LS++ G + +GS+ V+LG T I+ V +
Sbjct: 4 LSEGEKHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G ++IF + SP A+P FE GR SE + EL + R L + A+
Sbjct: 64 LGKPSILHPDKGKVAIFVDCSPTAEPLFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLE 179
D SL V+ GK+ W + ID ++ + GNL+DA +A +L P+ S+ D E
Sbjct: 123 DLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEE 182
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V +E E L +P+ +T ++D T EE+ M ++ ++N +G +
Sbjct: 183 PEVDVSDE-EFLQFDTSGVPVIITLTKVGRH--YIVDATSEEESQMSSAVSVSVNRHGQI 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMA 266
C + K GG G+ SVI + +A ++
Sbjct: 240 CGLTKRGGAGLDPSVIFDMISVAKHVS 266
>gi|194707850|gb|ACF88009.1| unknown [Zea mays]
gi|223975603|gb|ACN31989.1| unknown [Zea mays]
gi|413935071|gb|AFW69622.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935072|gb|AFW69623.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935073|gb|AFW69624.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
Length = 287
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 139/267 (52%), Gaps = 15/267 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R LS++ G + +GS+ V+LG T I+ V +
Sbjct: 4 LSEGEKHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G ++IF + SP A+P FE GR SE + EL + R L + A+
Sbjct: 64 LGKPSILHPDKGKVAIFVDCSPTAEPLFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLE 179
D SL V+ GK+ W + ID ++ + GNL+DA +A +L P+ S+ D E
Sbjct: 123 DLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEE 182
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V +E E L +P+ +T ++D T EE+ M ++ ++N +G +
Sbjct: 183 PEVDVSDE-EFLQFDTSGVPVIITLTKVGRH--YIVDATSEEESQMSSAVSVSVNRHGQI 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMA 266
C + K GG G+ SVI + +A ++
Sbjct: 240 CGLTKRGGAGLDPSVIFDMISVAKHVS 266
>gi|108864299|gb|ABG22460.1| 3' exoribonuclease family domain 1-containing protein, putative,
expressed [Oryza sativa Japonica Group]
gi|215706902|dbj|BAG93362.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736842|dbj|BAG95771.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218185641|gb|EEC68068.1| hypothetical protein OsI_35924 [Oryza sativa Indica Group]
gi|222615895|gb|EEE52027.1| hypothetical protein OsJ_33746 [Oryza sativa Japonica Group]
Length = 306
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 137/279 (49%), Gaps = 16/279 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +R D R P E R ++ GS+ V+LG T ++ + +++ P +
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++++ P+ P GRP+E A + + ++ L S ++ + LC+++GK
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKAS 149
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE------- 187
W +D++ L+ G+L DAA I+A+A+ P S+G DD V E
Sbjct: 150 WLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVG--DDGRVFTVGGNEGKAKYEL 207
Query: 188 --REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
RE L I ++P ++T L DPT EE+++ +T L+++ + +IQKP
Sbjct: 208 VNREKRKLTITNVPFSLTCALHKDNVL--ADPTAEEESIIETSVTIVLDSSDQIVSIQKP 265
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
GG + I +C+ LA + + + D VE ++
Sbjct: 266 GGAVTSMTTIKECISLAKDRRRKLREILMDNVEAMEVDQ 304
>gi|322788559|gb|EFZ14187.1| hypothetical protein SINV_07329 [Solenopsis invicta]
Length = 292
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 135/275 (49%), Gaps = 17/275 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQ-THIMGFVTG 66
L++ EK FI + +R DGR+ ++YR L I+ GS+ +++G T ++ V
Sbjct: 6 LSLGEKTFIIHGVDLDLRNDGRSKYQYRPLEIETKLMKHAHGSARLRVGNITDVLVGVKV 65
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
++ PY +RP+EG L F + S A P+FE + A E+ ++ + A D + L
Sbjct: 66 EIDTPYAERPHEGKLDFFVDCSANATPAFEGKGGDDLATEISNVLSIAYQTPNAFDLKQL 125
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIV 182
C++ K W + +D+ IL GGNL DA A A+L P GGE D++V
Sbjct: 126 CIIPYKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVITATLDGGEPDIQVSD 185
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P + + L + + P+ VT VIDPT EE+ + + NG V ++
Sbjct: 186 DP---YDCIKLDVTNYPLVVTVCKIGDN--FVIDPTSEEESCSTASILISAMPNGKVTSV 240
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
K G +L S +++ +++ DI+ K+ +AV
Sbjct: 241 VKLGYGSLLPSTLIKMMKV----GKDISLKLNEAV 271
>gi|389740648|gb|EIM81838.1| hypothetical protein STEHIDRAFT_171488 [Stereum hirsutum FP-91666
SS1]
Length = 287
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 131/260 (50%), Gaps = 7/260 (2%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLV 69
++ + ++E ++ +R DGR ++R LS+ G +GSS V+LG T I+ V ++
Sbjct: 24 LHPRIYLERFIAESVRPDGRTFDDWRDLSVNVGSIGTANGSSLVRLGDTTIVCGVKAEIA 83
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P DRP+EG + + P+ P F+ G PS+ A L + L S + SLC+
Sbjct: 84 EPDLDRPDEGWIVPNIDLPPICSPKFKPGPPSDEAQALSDRLFDSLTSSNVLPLSSLCIE 143
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK W + +D ++ GN+ DAA +A +++L P+ + + + E
Sbjct: 144 PGKSAWVLYVDATCINYDGNVFDAALVAMVSALKNTLLPKATFDPDTERTTCSRKKELMS 203
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
PL L LPI+++FG F S ++ DPT EE ++ ++ TLN + GEG
Sbjct: 204 PLEL-SEGLPISLSFGLFDSN--ILADPTSFEEPLLDTTISITLNTSTKQLLAVSQLGEG 260
Query: 250 VLQS-VIMQCLRLASRMASD 268
+ S V+ +C++ A R D
Sbjct: 261 LAGSDVVGKCIQEAKRRLED 280
>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
Length = 287
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 13/273 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+V E+ FI+ ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSVGERNFIQGGINQNLRSDGRKRDAYRPIFVETGVIPQANGSARVRIGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++G ++IF + SP+A+P+FE E + EL + L ++ +D
Sbjct: 64 LGRPNAFQPDKGKVAIFVDCSPVAEPTFEARGGEELSAELSAALQHCLLGGKSGAGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEV 180
SL V GK+ W + ID ++ GNL+DA A A+L P+ + GG D +
Sbjct: 124 LSSLVVAEGKICWDLYIDGLVVSFDGNLLDALGAAIKAALSNTGIPKVHVAAGGLGDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E E L +P+ VT ++D T EE+ M ++ ++N G +C
Sbjct: 184 EVDISDE-EFLQFDTSGVPVIVTLTKVGRH--YIVDATSEEESYMSSAVSVSINRKGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+ K GG G+ SVI + +A ++ + K+
Sbjct: 241 GLTKRGGAGIDPSVISDIISVAQHISEQLINKL 273
>gi|356552650|ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 299
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 14/255 (5%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L+ IR DGR + R+ SI G +GS+ V++G T ++ + +++ P
Sbjct: 26 RYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTMLTAIKMEVMTPSL 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG L+I P+ P GRP+E++ + + + + SR +D + L ++ GK
Sbjct: 86 ESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSRMIDLKELSLVGGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV------HPPEE 187
W +D++ LD G L DAA I+A+A+L + P ++ DD ++++ P
Sbjct: 146 AWMAYLDIYCLDADGALFDAALISAVAALSHLQIPAVAMN--DDGKIVLVSGEDGQKPVN 203
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+E L + +P ++T ++ ++ DPT EE++M +T L+ +G + ++ KPGG
Sbjct: 204 KEKRKLTLRSIPFSLT--CILHKNYILADPTAEEESIMETHVTIVLDTSGQLISLYKPGG 261
Query: 248 EGV-LQSVIMQCLRL 261
+ S I C+ L
Sbjct: 262 PALAYTSAIQDCVGL 276
>gi|223997282|ref|XP_002288314.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975422|gb|EED93750.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 576
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 159/344 (46%), Gaps = 60/344 (17%)
Query: 7 NTWRLTVNEKRFIETA----LSSG---IRIDGRNPFEYRKLSIKFGREDGSSE--VQLGQ 57
+T L++ E+ F+ + LSS +R+DGR P E R + + F R SE VQLG
Sbjct: 9 DTSTLSLPERTFLRFSARGTLSSNNSILRLDGRQPSESRPIRLSFSRCHNRSECTVQLGN 68
Query: 58 -THIMGFVTGQLV-QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES------------ 103
T V +LV P DRPN+G + E PM +E P +
Sbjct: 69 GTRSAASVRAELVPPPNADRPNDGQVKFGVEVGPMGCMGYEVVAPVSNYGIGDAVDGGQV 128
Query: 104 ----------------AVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG 147
+ + R+++R L ++D E+LCV +G VW + +D+ +LD+G
Sbjct: 129 GSGGGGGDVPYVQRLKSNRILRLLERTLLIGGSIDAEALCVQSGVWVWRLHVDVSLLDDG 188
Query: 148 GNLVDAANIAALASLLTFRRPECSLGGEDDLE--------------VIVHPPEEREPLPL 193
GN +DA +AA+A+L +R PE +GG D + I+H ++REP PL
Sbjct: 189 GNSMDACVLAAVAALRHYRLPEVDIGGGDGNDDGDDNANNIGYQETTIIH-SDDREPTPL 247
Query: 194 IIHHLPIAVTFGFFSSES------LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+HH P+ TF FS E+ ++DP EE G +T + N G++C + PGG
Sbjct: 248 PLHHTPLTATFALFSDETGTTTSVSALLDPFDREELASDGLLTWSYNKYGEMCCLDFPGG 307
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKR 291
+ +M L R +I + ++ A+ T+ ++ R
Sbjct: 308 CELRPRQLMASSNLGKRRCIEICELLETALAEAETKAETERMAR 351
>gi|195620544|gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
gi|413935080|gb|AFW69631.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935081|gb|AFW69632.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935082|gb|AFW69633.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
gi|413935083|gb|AFW69634.1| exosome complex exonuclease RRP42 isoform 4 [Zea mays]
Length = 287
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 139/267 (52%), Gaps = 15/267 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R LS++ G + +GS+ V+LG T I+ V +
Sbjct: 4 LSEGEKHFIRGGIAQDLRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATDIIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G ++IF + SP A+P FE GR SE + EL + R L + A+
Sbjct: 64 LGKPSILHPDKGKVAIFVDCSPTAEPLFE-GRGSEELSAELSVSLQRCLLGGKSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLE 179
D SL V+ GK+ W + ID ++ + GNL+DA +A +L P+ S+ D E
Sbjct: 123 DLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASDEE 182
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V +E E L +P+ +T ++D T EE+ M ++ ++N +G +
Sbjct: 183 PEVDVSDE-EFLQFDTSGVPVIITLTKVGRH--YIVDATSEEESQMSSAVSVSVNRHGQI 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMA 266
C + K GG G+ SVI + +A ++
Sbjct: 240 CGLTKRGGAGLDPSVIFDMISVAKHVS 266
>gi|360044264|emb|CCD81811.1| putative exosome complex exonuclease rrp45
(polymyositis/scleroderma autoantigen 1) (ribosomal rna
processing protein 45) [Schistosoma mansoni]
Length = 471
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 156/291 (53%), Gaps = 16/291 (5%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKF--GRE---DGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
L SG R+DGR+ EYR++S +F G++ G V++G T +M V+ ++++P RP+
Sbjct: 14 LISGYRLDGRSINEYREISFRFPQGKDPNVSGCCVVKIGATTVMAQVSVEVIEPKHFRPS 73
Query: 78 EGTLSIFTEFS--PMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
+G L + + S ++ + + + L ++ LR+S +D ++LC++A + V+
Sbjct: 74 QGMLFVHFDASILKLSKTLYRKQKRDDEGRRLSAVLQTLLRDS--IDLDALCIVAWERVF 131
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL-EVIVHPPEEREP-LPL 193
A+R++L L GNL D +AA+A+L FRRP+ + DD+ +V+V + P +PL
Sbjct: 132 AVRVELRALSYDGNLGDCGTLAAVAALAAFRRPDVYV---DDMGKVLVDFEAKFRPRVPL 188
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMV-GKMTATLNANGDVCAIQKPGGEGVLQ 252
I P+ VT G + ++++DPT EE ++ G++ L ++C + G +Q
Sbjct: 189 GIRRTPVLVTLGLTADAKVVLVDPTAREELILTGGRVLLGLTNTSEICCLYTTGLSVPIQ 248
Query: 253 -SVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSV 302
S + +C+ LA+ A + I A+E + +R H S L+ SV
Sbjct: 249 CSSLSRCIHLANSKAKSLVSLINWALEGLSIQREANLAAAHARSSELNNSV 299
>gi|357152306|ref|XP_003576076.1| PREDICTED: exosome complex component RRP43-like [Brachypodium
distachyon]
Length = 307
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 136/279 (48%), Gaps = 16/279 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +R D R E R ++ G GS+ ++LG T ++ + +++ P +
Sbjct: 31 FLERHLRESVRPDARRLAEARPTTVALGAVSSAHGSALIRLGDTAMLASIKLEVMSPPTE 90
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++++ P+ P GRP+E A L + ++ L S ++ + LC+++GK
Sbjct: 91 TPDEGSVAVEFHMPPICSPLVRPGRPAEMAPVLSKALEDVLMSSGMINLKELCLISGKAS 150
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE------- 187
W +D++ L+ G+L DAA I+A+A+ P S+G DD V E
Sbjct: 151 WLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPLVSVG--DDGRVFTVGGNEGKTKYEL 208
Query: 188 --REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
RE L + +P A+T L DPT EE+++ +T L+++ + +IQKP
Sbjct: 209 VNREKRKLTLKDIPFALTCALHKDNVL--ADPTAEEESIIETFVTVALDSSDRLVSIQKP 266
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
GG + I C+ LA + + + D+VE ++
Sbjct: 267 GGGVTSMATIKTCITLAKERRHKLQEILMDSVEAMEVDQ 305
>gi|424819697|ref|ZP_18244764.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
Length = 253
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 134/271 (49%), Gaps = 24/271 (8%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
+T+ +I + G+R+D R FE R+++IK DGS+ V+LG T ++ V
Sbjct: 1 MTLKNYDYIRSLAQKGLRLDQREAFEGRRMAIKDNVINHSDGSAYVELGNTKVIAGVKVL 60
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
P+ DRP +G L + E S + S G S++E+GR+ DRG+RES +D LC
Sbjct: 61 NGTPFPDRPADGALIVNFELSELT--SNYPGDRINSSIEVGRVTDRGIRESNLIDLSKLC 118
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
V GK V + +D+ ++N GNL DA NIAAL ++L R + E
Sbjct: 119 VEEGKTVLFVYVDIVCINNEGNLFDAGNIAALRAILNTRYS-------------IEGKEG 165
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ LP I +A++ F + DP+ EE V K+ ++ + + ++QK GG
Sbjct: 166 KFSLP--IDRTKLAISHTFTKINGTIFFDPSAEEENVEDTKL--SIGISDKINSLQK-GG 220
Query: 248 EGVLQS-VIMQCLRLASRMASDITKKIKDAV 277
+G + + +C+ A + + K + D +
Sbjct: 221 DGFFTAEEVDKCIEKAIELREERFKILMDGI 251
>gi|442763221|gb|JAA73769.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp43,
partial [Ixodes ricinus]
Length = 257
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 11/224 (4%)
Query: 27 IRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R DGR+ E R ++ G DGS+ V++G T ++ + +L +P P G +
Sbjct: 24 VRSDGRDLGERRDTALNIGSISTADGSALVKMGCTTVVCGIKAELAEPSVSEPKCGFIVP 83
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
+ P+ P F+ G P A L ++ L S VD E LC+ KL W +++DL
Sbjct: 84 NVDLPPLCSPMFKPGPPGPQAQVLSTMMLDVLSNSNCVDLEKLCIEEAKLCWCLQLDLTC 143
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVT 203
LD GNL +A +AA A+L + P+ S E ++V++ ERE + + P+A +
Sbjct: 144 LDYDGNLAEACVLAATAALSSLTLPKVS-TAEGKVDVLL----EREAVG--VSPGPLAAS 196
Query: 204 FGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
F ++ ++V DPTH EE + T L A+ +C + KPGG
Sbjct: 197 FAVL-ADDVVVADPTHEEECLAQETFTVVLAADDTLCTVHKPGG 239
>gi|156553642|ref|XP_001600402.1| PREDICTED: exosome complex component RRP43-like [Nasonia
vitripennis]
Length = 277
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 9/274 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
T++ +++ +S R DGR +R +S+ G + D S+ ++G T ++ + +L
Sbjct: 7 TIHPAKYLRDHFASNTRPDGREFISFRPVSVNIGSITQADSSAVFKIGNTSVVCGIKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P + P+ G + + SP++ F G P E ++V+R L S AVD + LC+
Sbjct: 67 ASPKAETPDCGFIIPNVDLSPLSSSKFRPGPPGEETQCATKLVERILVNSEAVDLKDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
KLVW + DL +D G+++DA A +A+ P E +E +++
Sbjct: 127 HKDKLVWVLYCDLICIDYDGSVIDACIGALVAAFKILTLPVV----EYTIETGATKVDDK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ + + LP + TF F ++ LL+ DPT EE + + +T N +C + K GG
Sbjct: 183 NRISVPLRQLPASTTFAIFDNQ-LLITDPTEDEEKLALSTLTIVFNEKS-MCMVHKSGGI 240
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNT 282
+ Q ++ +C+ A + K I A T +
Sbjct: 241 PMSQKLLSKCVSKAKSRGEQVRKLILTAASTVKS 274
>gi|346473845|gb|AEO36767.1| hypothetical protein [Amblyomma maculatum]
Length = 223
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 104/196 (53%), Gaps = 8/196 (4%)
Query: 55 LGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRG 114
+G T ++ V +L +P P +G + + P+ P F+ G P E A L +++
Sbjct: 1 MGCTTVVCGVKAELAEPAVAMPKQGYIVPNVDLLPLCSPMFKPGPPGEQAQVLSKLMLDI 60
Query: 115 LRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174
L S ++D E LC+ GKLVW++ +DL LD GN+ +A +AA A+L + P+ L
Sbjct: 61 LTSSDSLDLEKLCIEEGKLVWSLNVDLTCLDYDGNVAEACILAATAALCSLTLPK-VLTT 119
Query: 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
+ ++ V++ E + + P+A TF + ++ +V+DPTH EE + T LN
Sbjct: 120 DGEVNVLLEREEAK------VTEGPLAATFAVLADDT-IVVDPTHEEECLAAETFTVILN 172
Query: 235 ANGDVCAIQKPGGEGV 250
A+ +C + KPGG +
Sbjct: 173 ADNKICGVHKPGGSAL 188
>gi|332020945|gb|EGI61339.1| Exosome complex exonuclease RRP42 [Acromyrmex echinatior]
Length = 292
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 136/275 (49%), Gaps = 17/275 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQ-THIMGFVTG 66
L++ EK FI + +R DGR+ ++YR + I+ GS+ +++G T ++ V
Sbjct: 6 LSLGEKTFIIHGIDLDLRNDGRSRYQYRPIEIETKLMKHTHGSARLRIGNITDVLVGVKL 65
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
++ PY +RP EG L F + S A P+FE + A E+ ++ + A D + L
Sbjct: 66 EIDTPYAERPEEGKLEFFVDCSANATPAFEGKGGDDLATEISNVLSMAYQTPDAFDLKQL 125
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIV 182
C++ + W I +D+ IL GGNL DA A A+L P + GGE D+++
Sbjct: 126 CIIPHQKCWKIYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVIIAILDGGEPDIQISD 185
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P + + L + + P+ +T VIDPT EE+ + ++ NG V ++
Sbjct: 186 DP---YDCIKLDVTNYPVVLTVCKIGDN--FVIDPTSEEESCSTASILMSVMPNGKVTSV 240
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
K G +L S +++ L ++ DI+ K+ +A+
Sbjct: 241 VKLGYGSLLPSTLIKML----QVGKDISFKLNEAL 271
>gi|254169471|ref|ZP_04876288.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197621577|gb|EDY34175.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 210
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 21/208 (10%)
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P+ D PN G L+ E +P+A P+FE G P E A+EL R+VDRG+RE A+D E L +
Sbjct: 14 PFPDTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIREGHAIDLEKLVIEE 73
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEERE 189
G+ VW + ID+H+LD GNL DAA ALA+L P GED
Sbjct: 74 GEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASRYDLGED------------- 120
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
L + H P+ VTF +V DP EE++ ++T N G + A+QK G
Sbjct: 121 -FKLPVQHYPVPVTFAKIG--DWIVADPNLDEESIASARLTVATNEEGKINAMQK----G 173
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAV 277
+ + + ++ M+ +I K+++ +
Sbjct: 174 LSGTFTYEEVKKVINMSMNIGGKVREII 201
>gi|357122793|ref|XP_003563099.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 136/267 (50%), Gaps = 15/267 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R ++++ G + +GS+ V+LG T ++ V +
Sbjct: 4 LSEGEKHFIRGGIAQDLRADGRTKLQFRPVTVETGVIPQANGSARVRLGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G +SI+ + SP A P FE GR SE + EL + R L + A+
Sbjct: 64 LGKPTVLHPDKGKVSIYVDCSPTAAPIFE-GRGSEDLSAELSVALQRCLLGGKSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLE 179
D SL VL GK W + ID ++ + GNL+DA A +L P+ SL E D E
Sbjct: 123 DLSSLIVLEGKACWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLNAETDGE 182
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V +E E L +P+ VT ++D T EE+ M ++ ++N G +
Sbjct: 183 PEVDVSDE-EFLQFDTSSVPVIVTLTKVGKH--YIVDATSEEESQMSSAVSVSVNRRGQI 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMA 266
C + K GG G+ +VI + +A ++
Sbjct: 240 CGLTKRGGAGLDPTVIFDMISVAKHVS 266
>gi|123508639|ref|XP_001329682.1| nucleolar autoantigen-like protein [Trichomonas vaginalis G3]
gi|121912729|gb|EAY17547.1| nucleolar autoantigen-like protein, putative [Trichomonas vaginalis
G3]
Length = 315
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 124/259 (47%), Gaps = 32/259 (12%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
NE R LS+G+R DGR+P E R+L++ F DG++ V+LG T + V V
Sbjct: 12 NEIRSTREMLSNGLRPDGRDPNEPRRLTVDFS--DGAAIVKLGSTIVSCRVIKNQVLADE 69
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ PN+G SI + D F A L + D + + A+D ESL + GKL
Sbjct: 70 NHPNQGFFSIGLSSTHKIDSYFR-------AETLNAVRDM-FKMNNALDLESLVIQIGKL 121
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW ++ ++ IL+N G L +A +A LL + P R L
Sbjct: 122 VWELKCEIVILENDGGLFEAMTLAVGCGLLATKL-----------------PSTRGDRSL 164
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+HHLPI +TF + V DPT E G +T NA G++C+I+K GG + +
Sbjct: 165 TLHHLPIPITFALIDQRTRFV-DPTVLEALACDGFLTICANAQGEICSIRKNGGVTLPST 223
Query: 254 VIMQCLRLASRMASDITKK 272
V+ C+ + A D++KK
Sbjct: 224 VMDNCIDI----AVDLSKK 238
>gi|356526509|ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 302
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 137/259 (52%), Gaps = 18/259 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L+ IR DGR + R+ SI G +GS+ V++G T I+ + +++ P
Sbjct: 26 RYFERHLAESIRPDGRPLGKARETSIFLGAVASANGSALVKIGSTTILTAIKMEVMTPSL 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG L+I P+ P GRP+E++ + + + + S+ +D + L +++GK
Sbjct: 86 ESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDTISSSKMIDLKELSLVSGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPE-----ER 188
W +D++ LD G L DAA ++A+ASL + P ++ DD ++++ E E+
Sbjct: 146 AWMAYLDIYCLDADGALFDAALLSAVASLSHLQIPVVAMN--DDGKIVLVSEEDGQKREQ 203
Query: 189 EPL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
EP+ L + +P ++T ++ ++ DPT EE++M +T L+ +G + ++
Sbjct: 204 EPVNKEKRKLTLRSIPFSLTCILH--KNYILADPTAEEESIMETHVTVVLDTSGQLISLY 261
Query: 244 KPGGEGV-LQSVIMQCLRL 261
KPGG + S I C L
Sbjct: 262 KPGGPVLAYTSAIQDCAAL 280
>gi|346467463|gb|AEO33576.1| hypothetical protein [Amblyomma maculatum]
Length = 215
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 26/226 (11%)
Query: 28 RIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR E R ++ G DGS+ V++G T ++ V +L +P P +G
Sbjct: 13 RSDGRQLNERRPTALNIGSISTADGSALVKMGCTTVVCGVKAELAEPAVAMPKQG----- 67
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+ G P E A L +++ L S ++D E LC+ GKLVW++ +DL L
Sbjct: 68 ----------YXXGPPGEQAQVLSKLMLDILTSSDSLDLEKLCIEEGKLVWSLNVDLTCL 117
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GN+ +A +AA A+L + P+ L + ++ V++ E + + P+A TF
Sbjct: 118 DYDGNVAEACILAATAALCSLTLPK-VLTTDGEVNVLLEREEAK------VTEGPLAATF 170
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+ ++ +V+DPTH EE + T LNA+ +C + KPGG +
Sbjct: 171 AVLADDT-IVVDPTHEEECLAAETFTVILNADNKICGVHKPGGSAL 215
>gi|145521242|ref|XP_001446476.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413954|emb|CAK79079.1| unnamed protein product [Paramecium tetraurelia]
Length = 984
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 117/208 (56%), Gaps = 15/208 (7%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGRE-DGSSEVQLGQTHIMGFVTGQLVQPYRDRP 76
F+ L+ G RIDGR+P + R + FG + G+ E+ LG+T + + P RP
Sbjct: 775 FVLEQLTLGKRIDGRDPLQLRMIQSHFGPQITGAVELSLGETSVSR------MSPNPIRP 828
Query: 77 NEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWA 136
+EG L + + D + P + +E+ + +++ ++ S+A+DTESLC+L+GK VW+
Sbjct: 829 SEGFLKFHLDLQVLRDTGY-MHNPIKLDMEIEKYIEKVIKGSKALDTESLCILSGKNVWS 887
Query: 137 IRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIH 196
I +++ +++N GNL+DA + + S FRRP+ S+ + V E+ +PL IH
Sbjct: 888 IDVNVALINNDGNLLDAMYLCCIFSQQHFRRPQVSVSLQG-----VKVEVEKRLVPLSIH 942
Query: 197 HLPIAVTFGF--FSSESLLVIDPTHHEE 222
H+P+++T + +++L+ D EE
Sbjct: 943 HIPLSLTQAILELNEQTILLQDSCLEEE 970
>gi|390601634|gb|EIN11028.1| hypothetical protein PUNSTDRAFT_142893 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 284
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 10/248 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ + ++E L+ GIR DGR+P +R ++I G DGS+ V+LG T I+ V ++
Sbjct: 26 LHPRAYLERFLAEGIRPDGRDPGAFRDVTINVGSISTADGSALVRLGDTTIVCGVKAEIA 85
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P + P+ G L + + P F+ G PSE A L + L S + ESLC+
Sbjct: 86 EPDLNSPSAGFLVPNIDLPAICSPKFKPGPPSEEAQVLSEKFNDILTLSGLLPLESLCIH 145
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK W + +D ++ GN DAA IA +++L P+ S ED E
Sbjct: 146 PGKSCWVLYVDATCINYDGNAFDAALIAMVSALKDTSLPKASY-DEDSGRTTC---SRSE 201
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG--G 247
+PL + P+ V+FG F+S LL DPT EE ++ +T N G++ + + G
Sbjct: 202 AMPLPLRQPPVPVSFGLFNSNHLLA-DPTSFEEPLLDTTITVIHNDIGELVNVTQLGLAS 260
Query: 248 EGVLQSVI 255
+ +L S I
Sbjct: 261 DSILSSCI 268
>gi|449269974|gb|EMC80708.1| Exosome complex exonuclease RRP43, partial [Columba livia]
Length = 277
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 15/278 (5%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR----------EDGSSEVQLGQTHIM 61
TV + L R DGR E+R ++ G DGS+ V+LG T ++
Sbjct: 1 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGNTVSLSGSITTADGSALVKLGNTTVI 60
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V +L P D N+G + E + F +G P E A + + + S+ +
Sbjct: 61 CGVKAELAAPAADSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADVIENSQMI 120
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
E LC+ +GKL W + D+ LD GN++DA+ A LA+L + P ++ E L +
Sbjct: 121 AKEDLCIASGKLAWVLYCDIICLDYDGNILDASAFALLAALKNVQLPSVTINEETGLSEV 180
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
++ PLII P+A +F F ++LL++DPT EE + G +T + +C+
Sbjct: 181 ----NLKQKNPLIIRKHPVATSFAVF-DDTLLIVDPTAEEEDLATGTVTIVTDDEDKLCS 235
Query: 242 IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ KPGG + + + C+ A ++ K I +++
Sbjct: 236 VHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIKS 273
>gi|393245799|gb|EJD53309.1| hypothetical protein AURDEDRAFT_110988 [Auricularia delicata
TFB-10046 SS5]
Length = 287
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 142/273 (52%), Gaps = 13/273 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ K + E LS+G R DGR ++R++S+ G +GS+ V+LG T ++ V ++
Sbjct: 21 LHPKAYFERFLSAGFRPDGRKTSDWREISVNVGSITTAEGSALVRLGDTTVVCGVKAEIA 80
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P D+P+EG L + ++ P F+ G PSE A L + L + SLC+
Sbjct: 81 EPELDKPDEGFLVPNLDLPAISSPKFKPGAPSEEAQVLSNRLYDLLTSCDVLPLSSLCIE 140
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK VW I +D+ ++ GN DA AA+A+L R P+ + E E
Sbjct: 141 PGKAVWTIFLDIICINYDGNAFDATVAAAVAALKNARLPKATFNEETRKTTC----SRTE 196
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG--- 246
L ++ +P+A++FG F + LV DP+ EE ++ +T ++A G +C++Q+ G
Sbjct: 197 KQALTLNRIPLAMSFGVFDTLH-LVADPSSFEEPLVSSTITIAVDAVGHICSLQQEGPVR 255
Query: 247 -GEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
G+ ++VI +CL A + ++ I DA++
Sbjct: 256 VGDKDAETVIDECLLAAKKRRKELAPVI-DAIQ 287
>gi|449549379|gb|EMD40344.1| hypothetical protein CERSUDRAFT_148276 [Ceriporiopsis subvermispora
B]
Length = 291
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 132/266 (49%), Gaps = 11/266 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ K ++E L +R DGR E+R +S+ G DGS+ V+LG T I+ V ++
Sbjct: 28 LHPKAYLERFLQENVRPDGRELDEWRDVSVHVGSISTADGSALVRLGDTTIVCGVKAEIA 87
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P D P G + + + P F+ G P+E A + ++ L + V SLC+
Sbjct: 88 EPELDSPEAGFIVPNLDLPAICSPKFKPGPPTEEAQVISDRLNEVLVTAGIVSPSSLCIQ 147
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK W + ID ++ GN DA +A +A+L R P+ E V +E
Sbjct: 148 PGKAAWVLYIDATCINYDGNAFDATLLAMVAALKNTRLPKARFDEEAGRTVCSRKVKE-- 205
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
PL I LP A+TFG F +L DPT EE ++ ++ T++ +G + ++ + G G
Sbjct: 206 --PLHIGRLPTAMTFGIFDGTHVLS-DPTSFEEPLLDTVLSVTVDESGGLVSVTQ-VGLG 261
Query: 250 VL--QSVIMQCLRLASRMASDITKKI 273
V+ Q ++ QC+ A + S + K++
Sbjct: 262 VIGKQDILPQCISAAKQRCSILAKQL 287
>gi|410947312|ref|XP_003980394.1| PREDICTED: exosome complex component RRP43 [Felis catus]
Length = 257
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 27/271 (9%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + D+ LD GN++DA A LA+L +++L +
Sbjct: 127 SPGKLSWVLYCDIICLDYDGNILDACTFALLAAL------------KNELSANTYTFSS- 173
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
P + I VT LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 174 ---PYLFLDFLIPVT--------LLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGS 222
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 223 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 253
>gi|357145083|ref|XP_003573518.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 15/267 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R + ++ G + +GS+ V+LG T ++ V +
Sbjct: 4 LSEGEKHFIRGGIAQDLRADGRTRLQFRPVIVETGVIPQANGSARVRLGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G +SI+ + SP A P FE GR SE + EL + R L + A+
Sbjct: 64 LGKPTVLHPDKGKVSIYVDCSPTAAPIFE-GRGSEDLSAELSVALQRCLLGGKSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLE 179
D SL VL GK W + +D ++ + GNLVDA A +L P+ SL E D E
Sbjct: 123 DLSSLIVLEGKACWDLYVDGLVVSSDGNLVDALAAAIKVALSDTGIPKVNVSLNAETDGE 182
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V +E E L +P+ VT ++D T EE+ M ++ ++N G +
Sbjct: 183 PEVDVSDE-EFLQFDTSSVPVIVTLTKVGKH--YIVDATSEEESQMSSALSVSVNRRGQI 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMA 266
C + K GG G+ ++I + +A ++
Sbjct: 240 CGLTKRGGTGLDPTIIFDMISVAKHVS 266
>gi|297829330|ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328387|gb|EFH58806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 142/273 (52%), Gaps = 13/273 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ F++ ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGEQHFVKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVKIGGTDVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
+ +P +P++G +++F + SP A+P+F E + EL + R L ++ ++
Sbjct: 64 IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE--DDLEV 180
SL + GK+ W + ID ++ + GNL+DA A A+L P+ ++ E DD +
Sbjct: 124 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
+ +E E L +P+ VT + ++D T EE+ M ++ ++N G +C
Sbjct: 184 EIDISDE-EYLQFDTSSVPVIVTLTKVGTH--YIVDATAEEESQMSSAVSISVNRAGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+ K GG G+ SVI+ + +A + ++ K+
Sbjct: 241 GLTKRGGSGLDPSVILDMISVAKHVTENLMSKL 273
>gi|241813566|ref|XP_002416505.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
gi|215510969|gb|EEC20422.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
Length = 290
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 14/240 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK FI + +R DGR+ EYR + ++ G GS+ V+L T I+ + QL P
Sbjct: 10 EKTFIIHGIQENLRCDGRSCLEYRDIELETGVVSNCSGSAHVRLANTDILVGIKAQLETP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVLA 130
++G + F + + ADP FE GR E A E+ + + R + +D SL V+
Sbjct: 70 DPGSTDQGRIEFFVDCTANADPEFE-GRGGEDIAAEISSALAQAYRSPKCLDLRSLAVVP 128
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPE 186
G+ VW + +D+ IL+ GG+LVDA ++A A+L + P+ S+ G+ ++EV P +
Sbjct: 129 GQQVWVLYVDILILECGGSLVDAVSVAVKAALYDLKIPKVSVTVDENGDPEVEVSGDPFD 188
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ L ++P +T + ++D T E+A VG + + A+G + A+ K G
Sbjct: 189 VEK---LSTENVPCFITLSKVGQQ--FILDATQEEQACAVGSLALAVTASGKIAALFKAG 243
>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa]
gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 13/273 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ EK FI+ + +R DGR YR +SI+ G + +GS+ +++G T ++ V +
Sbjct: 4 LSLGEKHFIQGGIDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++G ++IF + SP+A+P FE E + EL + R L ++ +D
Sbjct: 64 LGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRCLLGGKSGAGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDA--ANIAALASLLTFRRPECSLGGEDDLEV 180
SL V GK+ W + ID ++ + GNL+DA A I A S R + + G D +
Sbjct: 124 LSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E E + +P+ VT ++D T EE+ M ++ +++ G +C
Sbjct: 184 EVDISDE-EFMQFDTSGVPVIVTLTKVGRH--YIVDATSEEESQMSSAVSVSISRKGQIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+ K G G+ SVI + +A ++ + K+
Sbjct: 241 GLSKRGSAGLDPSVISDMISVARHISEQLINKL 273
>gi|388522149|gb|AFK49136.1| unknown [Lotus japonicus]
Length = 286
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 143/285 (50%), Gaps = 17/285 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FI+ ++ +R DGR YR + ++ G + GS+ +++G T ++ V +
Sbjct: 4 LSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++G +SI+ + S A+P+FE + + EL + R L +++ +D
Sbjct: 64 LGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRSLLGAKSGAGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDL 178
SL V+ GK+ W + ID ++ + GNL+DA A A+L P + G++
Sbjct: 124 LSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEKP 183
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
EV + + E L +P+ VT S ++D T EE+ M ++ ++N G
Sbjct: 184 EVEI---SDDEFLQFDTSGVPVIVTLTKVGRHS--IVDATSEEESQMSSAVSISVNRQGH 238
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+C I K G G+ S+++ + +A ++ + K+ + + E
Sbjct: 239 ICGITKRGSVGLDPSIVLDMISVAKHVSEQLINKLDSEIASAEAE 283
>gi|118792101|ref|XP_320154.3| AGAP012402-PA [Anopheles gambiae str. PEST]
gi|116116739|gb|EAA00202.3| AGAP012402-PA [Anopheles gambiae str. PEST]
Length = 274
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 132/275 (48%), Gaps = 21/275 (7%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFV 64
T++L ++ ++ + L + IR DGR E R L+I F DGS+ V++G T ++ +
Sbjct: 5 TFKL-LHPVKYYKDYLENNIRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTVVCGI 63
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
+L P P G L + SP++ PS+ G P + A + V + +R +D +
Sbjct: 64 KAELATPNALAPRHGFLVPNVDLSPVSSPSYRPGPPCDEAQVYSQSVADAISNARCIDLQ 123
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
LC+ GKLVW + DL LD+ G ++DAA IA +A+ T + P +
Sbjct: 124 QLCISPGKLVWCLYCDLVCLDHDGCVLDAAIIALVAAFHTVKLPTIQYNSDT-------- 175
Query: 185 PEEREP-----LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
EE E LPL + +P+ +F + L+ DPT EE + +T T+ ++G +
Sbjct: 176 -EETEADTSRLLPLTVDCVPVTTSFVMVAGR--LIADPTTEEEKLASTTLTVTV-SDGKM 231
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
+ GG+ + + +C A + + K I+
Sbjct: 232 SFFNQSGGDPMDSRTLKKCTDSAIKRERSVKKMIQ 266
>gi|358335737|dbj|GAA29354.2| exosome complex component RRP45 [Clonorchis sinensis]
Length = 474
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 159/316 (50%), Gaps = 23/316 (7%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-----EDGSSEVQLGQTH 59
+AN LT+ + L G R+DGR+ EYR++S +F R + V +G T
Sbjct: 32 MANAEILTLTD------MLVDGYRLDGRSLHEYREISFRFPRSAEDDHNSCCIVNIGATS 85
Query: 60 IMGFVTGQLVQPYRDRPNEGTLSIFTEFS-PMADPSFETGRPSESAVELGRIVDRGLRES 118
++ V+ ++++P RP++G L F F + P+ + E L ++ LR+S
Sbjct: 86 VVARVSAEVLEPKPSRPSQGML--FVNFDVTLIHPNAASRHKIEEGRRLSSVLQTLLRDS 143
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
VD +SLC++A + V+AIR++L L GNL D +AA+++L FRRP+ + +D+
Sbjct: 144 --VDLDSLCIVAWERVFAIRVELRALSYDGNLGDCGALAAISALAAFRRPDVFV--QDNG 199
Query: 179 EVIVHPPEEREP-LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMV-GKMTATLNAN 236
V V + P + L + +P+ VTFG + +++V D T E+A++ G++ + +
Sbjct: 200 TVTVDTEAKYRPRVALGLRRIPVLVTFGMTADATVIVQDATAREDAILTGGRVMIGVTSF 259
Query: 237 GDVCAIQKPGGEGVLQSV-IMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
+VC + G L+S + +C+R+A A + + ++ + + H S
Sbjct: 260 SEVCCLYTTGLTKPLRSTSLSKCVRMADSRARSLVALVNRVLDGLKRQHEAMRAAMHARS 319
Query: 296 ITLDGSVNLKEKLNEP 311
LD + + LN P
Sbjct: 320 SELDATRD--NSLNAP 333
>gi|353239012|emb|CCA70939.1| related to Exosome complex exonuclease RRP43 [Piriformospora indica
DSM 11827]
Length = 279
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 16/271 (5%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ + +++ L +R DGR P + R L + G DGS+ V+LG+T I+ V ++
Sbjct: 10 LHPRAYLQRFLDEHLRPDGRRPLDCRPLELTTGSISTADGSALVRLGETTIVCGVKAEIA 69
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P D P G + E S + F+ G PSE A + +++ + +S+ + +SLC+
Sbjct: 70 EPDLDAPTRGFIVPNVEISAICAARFKPGPPSEEAQIISEQLNQIIAKSKCLPLDSLCIE 129
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
K VW I ID ++ GN +DA +A +L + P+ +DD ++++ +
Sbjct: 130 PRKAVWTIYIDAVCINYDGNALDATLLAMTTALSNTQLPQARY--DDDKKMVLCSRMNKT 187
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ------ 243
PL L LP A TFG F S+ LLV DPT EE ++ +T L + + Q
Sbjct: 188 PLAL--KTLPTATTFGIFESKHLLV-DPTSFEEPLLESTVTVVLCGSEAISVSQVGLGRE 244
Query: 244 -KPGGEGVLQSVIMQCLRLASRMASDITKKI 273
P G+ S+ +C+ LA + ++I + +
Sbjct: 245 TSPSGQSS-TSLYTECIELAQKRQAEILRAV 274
>gi|198426220|ref|XP_002120565.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA-processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) [Ciona intestinalis]
Length = 279
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 132/260 (50%), Gaps = 8/260 (3%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+ ++ L IR D R + RK ++ G DGS+ V++G T +M V +L QP +
Sbjct: 13 YYKSFLKENIRPDTRTLQQIRKTTLNVGPITTADGSALVKIGNTMVMCGVKAELTQPTAE 72
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P +G + + + F+ G P+ A + +D ++ + V++E LC++ KLV
Sbjct: 73 EPKKGIIVPNLDLPALCSSKFKPGPPNTQAQVGTKFLDNLIKIANLVNSEDLCIVPDKLV 132
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W + D+ L+ G ++DAA +A +A+L + P +L E D V E PL
Sbjct: 133 WVLYCDVTCLNYDGCVIDAAVVALVAALRSVSLPSVTLNEETDTPVT----NINEKTPLT 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
I+ LP+A +F FF SE ++ DPT EE + G +T + + ++ + +PGG + +
Sbjct: 189 INCLPVASSFSFFESEH-IITDPTLSEEDITSGCLTVVSDEHENLLLVDRPGGVSITEDQ 247
Query: 255 IMQCLRLASRMASDITKKIK 274
+ C++ + + ++ K K
Sbjct: 248 LEICIQRSFKRTKEVHKLYK 267
>gi|440790324|gb|ELR11607.1| exosc8 protein [Acanthamoeba castellanii str. Neff]
Length = 278
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 128/259 (49%), Gaps = 24/259 (9%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGRED---GSSEVQLGQTHIMGFVTGQ--LVQPY 72
F L +R DGRN + RK +I G GSS V++G T + V + L P
Sbjct: 14 FYRKFLVHSVRPDGRNLSKARKTTITAGSVKTACGSSFVKIGNTSVSAGVKAECGLAPP- 72
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
G +++ E +P+ P+F+ G+PSE + + I++R +R + VD ES+ + K
Sbjct: 73 ---TTPGNVNV--ELTPLCSPNFKPGKPSELSQYIATILNRLVRTTDLVD-ESVLRIEDK 126
Query: 133 ---------LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
+VW + +D++ LD GN+ DA IA L++L R P + +DD +V
Sbjct: 127 EEQSKERKAMVWYLYVDMYCLDYDGNVFDACLIALLSALANVRLPAARVVSKDDNFTVVT 186
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
E + L + H PI +TF F E ++ DPT EE++ T N ++C++
Sbjct: 187 TGEAN--IGLRLRHFPIPLTFAIF-DEIYVLADPTAEEESLAGSTFTIIYNDKKEICSVL 243
Query: 244 KPGGEGVLQSVIMQCLRLA 262
KPGG + S + +C+ A
Sbjct: 244 KPGGTTLSDSTLKECMERA 262
>gi|346469645|gb|AEO34667.1| hypothetical protein [Amblyomma maculatum]
Length = 289
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 13/245 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R DGR EYR L ++ G GSS V+L T I+ + +L +P
Sbjct: 10 EKTYIIHGIHEDLRCDGRCCLEYRFLELETGVVSNCSGSSHVRLANTDILVGIKAELDEP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y P +G + F + + ADP FE E A ++ + + + +D +SL V+ G
Sbjct: 70 YPTAPGKGRIEFFVDCTANADPEFEGRGGEEVATKIKSALAQAFGSPKCLDLKSLAVIPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEE 187
+ VW + +D+ IL+ GG+L+DA ++ A+L + P+ S+ GE ++EV P +
Sbjct: 130 QQVWVLYVDVLILECGGSLLDAVSVGVKAALFDLKIPKVSVTVDENGEQEIEVSGDPYDV 189
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ + I +P +T + V+D T EEA VG + + A G + ++ K GG
Sbjct: 190 SK---MDITDVPCFITLSKVGQQ--FVLDATQEEEACAVGSLAMAVTAAGRIVSLIK-GG 243
Query: 248 EGVLQ 252
G L
Sbjct: 244 IGSLH 248
>gi|383861879|ref|XP_003706412.1| PREDICTED: exosome complex component RRP42-like [Megachile
rotundata]
Length = 291
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + + R DGR EYR + I+ + GSS +++G T ++ + +
Sbjct: 6 LSSGEKTFILHGVDADFRNDGRQRCEYRSIEIETKLMPQTHGSSRLRIGNTDVLVGIKVE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L P+ D+PNEG L F + S A P+FE + A E+ I+ + A D +LC
Sbjct: 66 LDSPHADKPNEGKLEFFVDCSATATPAFEGKGGDDLATEISNILTIAYQTRNAFDLRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+L K W I +D+ IL GGNL D A A+L + P+ + GGE D+++
Sbjct: 126 ILPSKKCWKIFVDVLILQCGGNLFDTVGAAVKAALYSTEIPKITAATLDGGEPDIQL--- 182
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
+ + + L + P+ VT ++DPT EE + ++ NG + ++
Sbjct: 183 SDDLYDCIQLDTSNYPVIVTLCKIGDN--YIVDPTSEEEVCSASSIVMSVLPNGRISSVI 240
Query: 244 KPG 246
K G
Sbjct: 241 KLG 243
>gi|449477436|ref|XP_004155022.1| PREDICTED: exosome complex component RRP42-like [Cucumis sativus]
Length = 286
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 141/273 (51%), Gaps = 13/273 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI+ ++ +R DGR YR +SI+ + +GS+ V++G T ++ V +
Sbjct: 4 LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++G +SI + SP A+P+FE E + EL ++R L ++ +D
Sbjct: 64 LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE--DDLEV 180
SL V+ GKL W + I+ ++ + GNL+DA A A+L P+ + E D+ +
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E E L +P VT ++D T EE+ M ++ +++ +G +C
Sbjct: 184 EVDVSDE-EFLQFDTSGVPAIVTLTKVGKH--YIVDATLEEESQMSSAVSISIDRHGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+ K GG GV S+I+ + + ++ ++ K+
Sbjct: 241 GLTKRGGVGVDPSIILDMISVGKHVSEELLNKL 273
>gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
Length = 291
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 139/275 (50%), Gaps = 17/275 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKF---GREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+F+E L + +R DGR R S+ F DGS+ V++G T ++ + ++P
Sbjct: 17 QFLERYLDASVRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA 76
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P++G LS+ P+ P GRP+E A + + L S VD L +++GK
Sbjct: 77 DTPDQGCLSVDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKA 136
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER----- 188
W I +D++ LD G+L+DAA +A++A+L + P + E ++ PP+ +
Sbjct: 137 AWMIYLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEG--KITKAPPDAQASSDG 194
Query: 189 ----EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+P L + P A+T ++ L+ DPT EEA++ KM LN++ + A+ K
Sbjct: 195 IEFTQPRRLNLGEFPFALTVAM--NQKSLIADPTAEEEAILDTKMIVILNSSQKIIALHK 252
Query: 245 PGGEGVLQSVIMQ-CLRLASRMASDITKKIKDAVE 278
GG + +Q CL LA R + K +++A++
Sbjct: 253 AGGSTTASTATIQDCLALAMRRRKTLQKVLEEALQ 287
>gi|291000993|ref|XP_002683063.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
gi|284096692|gb|EFC50319.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
Length = 279
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 13/266 (4%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSI----KFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
F L G+R DGR P + ++ G +GSS V+ G T ++ + +++ P
Sbjct: 18 FYNKFLPEGVRPDGR-PLNMIRETVVSSGSLGNCEGSSLVKTGNTSVVCGIKAEVMIPTE 76
Query: 74 DRPNEGTLSIFTEFSPM--ADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
D P G + I +F + AD + +E + + + +D LC+ G
Sbjct: 77 DAPKNGKVVISFDFPSICAADVTGNWEEINEKKSVIQQRLAGIFYNCNVMDLSQLCIEEG 136
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + DL+ L+N GN+ DAA IA L +L P C + +D E IV E +
Sbjct: 137 KAVWVLYADLYCLENDGNVFDAALIALLTALKNVSLPTCQITKDD--EAIV--TNENSNI 192
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
L + H PI ++FG S ++DPT EE+++ K+T N ++C++ KPGG+ +
Sbjct: 193 KLQLDHYPIPLSFGNLSE--FTIVDPTSEEESLLAWKLTIVYNERNELCSLFKPGGKSIK 250
Query: 252 QSVIMQCLRLASRMASDITKKIKDAV 277
QS + CL +A + I I+ +V
Sbjct: 251 QSTLNYCLEMAKKRTGKIISMIEKSV 276
>gi|212721556|ref|NP_001131768.1| exosome complex exonuclease RRP43 [Zea mays]
gi|194692484|gb|ACF80326.1| unknown [Zea mays]
gi|195623954|gb|ACG33807.1| exosome complex exonuclease RRP43 [Zea mays]
gi|414869688|tpg|DAA48245.1| TPA: exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 140/282 (49%), Gaps = 22/282 (7%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +RID R E R ++ G GS+ +LG T ++ V +++ P +
Sbjct: 30 FLERHLGESVRIDARRLREARPTTVALGAVSSAHGSALARLGDTAMLASVKLEVMSPPAE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++++ P+ P GRP++ A + + ++ L S ++ + LC++ GK
Sbjct: 90 HPDEGSVAVEFHMPPICSPLVRPGRPTDVAPVISKALEDVLTSSGMLNLKDLCLITGKAS 149
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG------------GEDDLEVIV 182
W +D++ L+ G+L DAA I+A+A+ P S+G G++ E++
Sbjct: 150 WLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELV- 208
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
RE L + +P+++T E ++ DPT EE+++ +T ++++ + ++
Sbjct: 209 ----NREKRKLTLGAIPLSLTCALHKDE--ILADPTSEEESIIETYVTVVVDSSDRLVSL 262
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
QK GG + I +C+ LA + + + D+++ ++
Sbjct: 263 QKLGGAVTCMATIKECISLAKERRRSLREILLDSIKAMEVDQ 304
>gi|307206575|gb|EFN84575.1| Exosome complex exonuclease RRP42 [Harpegnathos saltator]
Length = 296
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 17/268 (6%)
Query: 11 LTVNEKRFI-----ETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMG 62
L++ EK FI T +G R DGR +EYR L I+ + +GS+ +++G T ++
Sbjct: 6 LSLGEKTFILHGIDSTDYQTGFRNDGRQKYEYRSLEIETRLMPQTNGSARLRIGNTDVLV 65
Query: 63 FVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD 122
V ++ P+ ++P EG L F + S A P+FE + A E+ ++ R A D
Sbjct: 66 GVKVEIDTPHANKPEEGKLDFFVDCSANATPAFEGKGGEDLATEISNLLSLAYRTPYAFD 125
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDL 178
+ LC+L K W + +D+ IL GGNL DA A A+L P G E D+
Sbjct: 126 LKELCILPHKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVVTAMLDGNEPDV 185
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
++ + + + L + + P+ +T V+DPT EE+ V + ++ NG
Sbjct: 186 KL---SDDLYDCIKLNVTNYPVVITVCKIGDNC--VVDPTPEEESCSVASLIMSVMPNGK 240
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMA 266
+ ++ K G + +++ L + +A
Sbjct: 241 ITSVVKIGYASLQPVTLIKMLEVGKSVA 268
>gi|297837509|ref|XP_002886636.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332477|gb|EFH62895.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 302
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 136/271 (50%), Gaps = 18/271 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
RF E LS +R DGR + R + G DGS+ ++G T ++ + +++ P
Sbjct: 26 RFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P+EG +++ P+ P+ GRP+++A + + + + S +D + LC+++GK
Sbjct: 86 DSPDEGCIALEFHMPPICSPTVRPGRPADAAPVISKRLSDTILSSGMIDLKELCLVSGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----------GGEDDLEVIVH 183
W +D++ LD G L DAA ++A+A+ + P +L GG+D +
Sbjct: 146 AWMGYLDIYCLDADGALFDAALLSAVAAFSNLQIPVVALNDNGRIVAITGGKDQDNASIT 205
Query: 184 PPE--EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
E +E L + ++P ++T ++ ++ DPT EE++M +T L+++ + +
Sbjct: 206 EKEAVNKEKRKLTLKNIPFSLT--CILHKTYILADPTTEEESIMDTLVTVVLDSSDQMVS 263
Query: 242 IQKPGGEGVLQS-VIMQCLRLASRMASDITK 271
K GG + S I C+ LA + A ++ +
Sbjct: 264 FYKSGGTALAYSPAIKSCVELARKRAKEVKQ 294
>gi|217073740|gb|ACJ85230.1| unknown [Medicago truncatula]
Length = 286
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 142/283 (50%), Gaps = 13/283 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FIE ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGEQCFIEGGITHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR-----AVD 122
L +P +P++G +SI+ + S A+P+FE + +L + R L ++ A+D
Sbjct: 64 LGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+D A +L + P+ + G D +
Sbjct: 124 RSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSSTGIPKVQIAAGASSDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E + + +P+ VT ++D T EE+ M ++ ++N G +C
Sbjct: 184 EVDVSDE-DFMQFDTSGIPVIVTLTKVGKH--YIVDATPEEESQMSSAVSISINRQGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ K GG G+ SVI+ + +A ++ + K+ + + E
Sbjct: 241 GVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIASAEAE 283
>gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
Length = 291
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 17/274 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKF---GREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+F+E L + +R DGR R S+ F DGS+ V++G T ++ + ++P
Sbjct: 17 QFLERYLDASVRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGNTTMLAGAKLETMEPAA 76
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P++G LS+ P+ P GRP+E A + + L S VD L +++GK
Sbjct: 77 DTPDQGCLSVDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLSSGVVDLRELSIVSGKA 136
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER----- 188
W I +D++ LD G+L+DAA +A++A+L + P + E ++ PP+ +
Sbjct: 137 AWMIYLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEG--KITKAPPDAQASSDG 194
Query: 189 ----EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+P L + P A+T ++ L+ DPT EEA++ KM LN++ + A+ K
Sbjct: 195 IEFTQPRRLNLGEFPFALTVAM--NQKSLIADPTAEEEAILDTKMIVILNSSQKIIALHK 252
Query: 245 PGGEGVLQSVIMQ-CLRLASRMASDITKKIKDAV 277
GG + +Q CL LA R + K +++A+
Sbjct: 253 AGGSTTASTATIQDCLALAMRRRKTLQKVLEEAL 286
>gi|83283957|gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
tuberosum]
Length = 314
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L +R D R R ++ G DGS+ ++G T ++ + +++ P
Sbjct: 26 RYHEHHLLKSVRPDARKLGSARDTTLALGAVASADGSALAKIGSTTMLAAIKMEVMTPTV 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG+++I P+ P GRP+E+A + + + + S +D + LC++ GK
Sbjct: 86 ECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVISKQLSDTILSSGMIDLKELCLVGGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI----VHPPEERE 189
W +D++ LD G L D A ++A+A+ P SL + + ++ V E+E
Sbjct: 146 AWMAYLDIYCLDADGALFDTALLSAVAAFSHLNIPVVSLNDDGRIVLVSEDTVRLKLEKE 205
Query: 190 PL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
P+ L ++ LP ++T ++ ++ DPT EE +M +T L+++ + ++ K
Sbjct: 206 PVNTEKRKLKLNSLPFSLTCILH--KNYILADPTAEEEPIMETIVTVVLDSSHQLVSLNK 263
Query: 245 PGGEGVLQ-SVIMQCLRLASRMASDITKKIKDAV 277
PGG + SVI C+ LA R A ++ + +A+
Sbjct: 264 PGGPVLSHTSVIQDCIGLARRRAKELQSVLNEAI 297
>gi|223945461|gb|ACN26814.1| unknown [Zea mays]
gi|413921676|gb|AFW61608.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 131/260 (50%), Gaps = 22/260 (8%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +RID R E R ++ G GS+ V++G T ++ V +++ P +
Sbjct: 30 FLERHLGESVRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSAE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++S+ P+ P GR +E A + + ++ L SR ++ + LC++ GK
Sbjct: 90 YPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKAS 149
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG------------GEDDLEVIV 182
W +D++ L+ G+L DAA I+A+A+ P S+G G++ E++
Sbjct: 150 WLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGKLFTVGGNDGKNKFELV- 208
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
RE L + +P+++T ++ DPT EE+++ +T ++++ + ++
Sbjct: 209 ----NREKRKLTLGDIPLSLTCALHKGS--ILTDPTSEEESIIETYVTVVVDSSDRLVSL 262
Query: 243 QKPGGEGVLQSVIMQCLRLA 262
QK GG + I +C+ LA
Sbjct: 263 QKVGGTVTSMATIKECISLA 282
>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
Length = 284
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 15/267 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R +S++ G + +GS+ V+LG T ++ V +
Sbjct: 4 LSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESR-----AV 121
L +P P++G +SIF + SP A P FE GR SE + EL + R L + A+
Sbjct: 64 LGKPSILHPDKGKVSIFVDCSPTAAPMFE-GRGSEEFSAELCVALQRCLLGGKSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE--CSLGGEDDLE 179
D SL V+ GK+ W + ID ++ + GNL+DA A +L P+ SL D E
Sbjct: 123 DLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTDEE 182
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
V+ +E E L +P+ VT ++D T EE+ M ++ ++N +G +
Sbjct: 183 PEVNVSDE-EFLQFDTSSVPVIVTLTKVGKH--YIVDATSEEESQMSSAVSVSVNRHGQI 239
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMA 266
+ K GG G+ SVI + +A ++
Sbjct: 240 RGLTKRGGAGLDPSVIFDMISVAKHVS 266
>gi|357518287|ref|XP_003629432.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
gi|355523454|gb|AET03908.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
Length = 286
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 13/283 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FIE ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGEQCFIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR-----AVD 122
L +P +P++G +SI+ + S A+P+FE + +L + R L ++ A+D
Sbjct: 64 LGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+D A +L P+ + G D +
Sbjct: 124 RSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E + + +P+ VT ++D T EE+ M ++ ++N G +C
Sbjct: 184 EVDVSDE-DFMQFDTSGIPVIVTLTKVGKH--YIVDATPEEESQMSSAVSISINRQGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ K GG G+ SVI+ + +A ++ + K+ + + E
Sbjct: 241 GVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIASAEAE 283
>gi|225430430|ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [Vitis vinifera]
gi|296082105|emb|CBI21110.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 142/290 (48%), Gaps = 24/290 (8%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+V EK FI+ ++ +R DGR YR +++ G + +GS+ V+LG T ++ V +
Sbjct: 4 LSVGEKHFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++G ++I+ + SP A P FE E + EL + L ++ +D
Sbjct: 64 LGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSLGGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+DA A A+L P E ++G D
Sbjct: 124 LSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGD--- 180
Query: 181 IVHPPE----EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
PE + E L +P+ VT ++D T EE+ M ++ +++
Sbjct: 181 --GLPEVDISDDEYLQFDTSGVPVIVTLTKVGRH--YIVDATLEEESQMSSAVSVSVSGQ 236
Query: 237 GDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK---DAVETYNTE 283
G +C + K GG G+ SVI+ + +A ++ + K+ A E + E
Sbjct: 237 GRICGLIKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEISAAEAFEEE 286
>gi|299755052|ref|XP_002912058.1| hypothetical protein CC1G_13591 [Coprinopsis cinerea okayama7#130]
gi|298411047|gb|EFI28564.1| hypothetical protein CC1G_13591 [Coprinopsis cinerea okayama7#130]
Length = 189
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 77/121 (63%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ +L +R+DGR P + R I FG E G E LG+T ++ V ++V+P
Sbjct: 7 SIPEKEFLAASLKENLRLDGRLPLQMRDPVITFGPELGYVECALGKTRVIANVEAKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+RP EG ++I +E SPMA +E GRPSE V + R++D+ L+ S AVD ESLC+ AG
Sbjct: 67 TPERPFEGIITIHSEISPMASSEYEPGRPSEEEVTITRMLDKVLKRSDAVDKESLCIQAG 126
Query: 132 K 132
+
Sbjct: 127 Q 127
>gi|269115421|gb|ACZ26287.1| putative exosome complex exonuclease [Mayetiola destructor]
Length = 273
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 126/260 (48%), Gaps = 8/260 (3%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKF---GREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++ ++ IR DGR +R + I G DGS+ V+LG T ++ + +L P
Sbjct: 12 KYYRNYIAHNIRPDGREFDIFRPIRINIKSIGSADGSAIVKLGNTTVICGIKAELTAPNV 71
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P G L + +P+ P + + ++ A L ++ +R+S+ +D + LC+ KL
Sbjct: 72 EEPQNGYLIPNIDLTPLCSPKYRSAASTDDAQVLTCHLNDIIRDSKWIDLKQLCIAKEKL 131
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW + D+ +D G+++DA+ +A A+L + P+ E + VH ER PL L
Sbjct: 132 VWILYCDITCIDYDGSILDASVVALCAALRSLMLPKVQYDIETN-NYTVH-QTERSPLEL 189
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
+ P++ T F +S+ DP EE + + + +G++C + K GG+ +
Sbjct: 190 -SENCPVSTTCMVFDEKSIFA-DPDAEEEE-LANTLITIASCDGELCLVNKAGGQSIAGQ 246
Query: 254 VIMQCLRLASRMASDITKKI 273
+CL+LA I K I
Sbjct: 247 QFDECLKLALNREKSICKLI 266
>gi|388511583|gb|AFK43853.1| unknown [Medicago truncatula]
Length = 286
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 13/283 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FIE ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGEQCFIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR-----AVD 122
L +P +P++G +SI+ + S A+P+FE + +L + R L ++ A+D
Sbjct: 64 LGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+D A +L P+ + G D +
Sbjct: 124 RSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E + + +P+ VT ++D T EE+ M ++ ++N G +C
Sbjct: 184 EVDVSDE-DFMQFDTSGIPVIVTLTKVGEH--YIVDATPEEESQMSSAVSISINRQGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
+ K GG G+ SVI+ + +A ++ + K+ + + E
Sbjct: 241 GVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIASAEAE 283
>gi|59006476|emb|CAI46226.1| hypothetical protein [Homo sapiens]
Length = 248
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 124/271 (45%), Gaps = 36/271 (13%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGV---- 62
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
+F +G P E A + + + S+ + E LC+
Sbjct: 63 ------------------------KAFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 98
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +++
Sbjct: 99 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV--NLKKK 156
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L + H P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 157 SYLNIRTH--PVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 213
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 214 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 244
>gi|307111365|gb|EFN59599.1| hypothetical protein CHLNCDRAFT_132993 [Chlorella variabilis]
Length = 292
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 140/288 (48%), Gaps = 19/288 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
++ E +I T ++ R DGR ++R LS+K G + GS+ VQLG+T ++ V +
Sbjct: 6 ISQGEVEWITTGVACNCRNDGRQREDFRPLSVKLGELAQATGSARVQLGETDVIVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLR-----ESRAVD 122
+ P DRP+ G L+ E SP+A P+F E A EL R ++R + VD
Sbjct: 66 IGSPDLDRPDCGRLNFAVECSPVASPAFRGRGGDELAGELSRALERSMYPGPSGRGGGVD 125
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GED----- 176
L +++GK W + +D +L+ GGNL DA ++AA A+L + P+ + GED
Sbjct: 126 LSLLSIVSGKTCWVLYVDALLLNIGGNLHDAVSVAAKAALADAKIPKVEVQPGEDPTDEP 185
Query: 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
D EV P E + L + +PI VT V+D T EE + ++A
Sbjct: 186 DYEVDDDP---SEAMRLDVGGMPICVTVSQIGGHC--VVDLTAEEELCSSAALQVAVDAT 240
Query: 237 GDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
G+VC K G+ S ++ + A R A+ + + +A+ ++
Sbjct: 241 GNVCGTTKRRRGGIEASQALEMVEAAQRAAAKLHAALNEALGAQQAQQ 288
>gi|18398046|ref|NP_566318.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|30680427|ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|11762184|gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana]
gi|26453010|dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
gi|56744222|gb|AAW28551.1| At3g07750 [Arabidopsis thaliana]
gi|332641077|gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|332641078|gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 286
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 140/273 (51%), Gaps = 13/273 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FI+ ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
+ +P +P++G +++F + SP A+P+F E + EL + R L ++ ++
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE--DDLEV 180
SL + GK+ W + ID ++ + GNL+DA A A+L P+ ++ E DD +
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQP 182
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
+ +E E L +P+ VT + ++D T EE+ M ++ ++N G +C
Sbjct: 183 EIDISDE-EYLQFDTSSVPVIVTLTKVGTH--YIVDATAEEESQMSSAVSISVNRTGHIC 239
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+ K G G+ SVI+ + +A + + K+
Sbjct: 240 GLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 272
>gi|427787609|gb|JAA59256.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Rhipicephalus pulchellus]
Length = 289
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 13/245 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R DGR+ EYR L ++ G GSS V+L T I+ + +L P
Sbjct: 10 EKIYIVHGIQENLRCDGRSCLEYRFLELETGLVSNCSGSSHVRLANTDILVGIKAELDAP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P+ G + F + + ADP FE E A E+ + R + +D +SL V+ G
Sbjct: 70 DPSAPHLGRVEFFVDCTANADPVFEGRGGEEIATEIRSALARTYSSPKCLDLKSLAVVPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEE 187
+ W + +D+ IL+ GG+L+DA ++A A+L + P+ S+ GE ++EV P +
Sbjct: 130 QQAWVLYVDVLILECGGSLIDAVSVAVKAALYDLKIPKVSVTIDENGEPEIEVSDDPYDV 189
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ + I ++P +T + V+D T E+A VG + + A G + ++ K GG
Sbjct: 190 NK---MSIANVPCFITLSKVGQQ--FVLDATQEEQACAVGSLAMAVTATGKIASLFK-GG 243
Query: 248 EGVLQ 252
G L
Sbjct: 244 TGSLH 248
>gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays]
gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 132/260 (50%), Gaps = 22/260 (8%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +RID R E R ++ G GS+ V++G T ++ V +++ P +
Sbjct: 30 FLERHLGESVRIDARRLREARTTTVALGAVSSAHGSALVRVGDTAMLASVKLEVMSPSAE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++S+ P+ P GR +E A + + ++ L SR ++ + LC++ GK
Sbjct: 90 YPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKALEDVLMSSRMLNLKDLCLITGKAS 149
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG------------GEDDLEVIV 182
W +D++ L+ G+L DAA I+A+++ P S+G G++ E++
Sbjct: 150 WLAYLDIYCLNADGSLFDAALISAVSAFTHLEIPLVSVGDDGKLFTVGGNDGKNKFELV- 208
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
RE L + +P+++T + ++ DPT EE+++ +T ++++ + ++
Sbjct: 209 ----NREKRKLTLGDIPLSLTCALH--KGCILTDPTSEEESIIETYVTVVVDSSDRLVSL 262
Query: 243 QKPGGEGVLQSVIMQCLRLA 262
QK GG + I +C+ LA
Sbjct: 263 QKVGGTVTSMATIKECISLA 282
>gi|72041533|ref|XP_796992.1| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 275
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 128/271 (47%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
T + + L +R DGR E R + G GS+ V+LG T ++ + G+
Sbjct: 7 TAQPVEYYKQFLKEEVRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKGEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P + P +G L + P+ F+ G PS A ++V L S ++ E LC+
Sbjct: 67 ASPTVEEPKKGYLVPNVDLPPLCSAQFKPGPPSIQAQVTSQLVADTLLSSNLLNYEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
G +VW + D+ LD GN++DA IA LA+L R P ++ ED + E+R
Sbjct: 127 KEGSMVWVLYCDMICLDYDGNIIDACLIALLAALRNVRLPVVTI-AEDTGLAELSSTEDR 185
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L I + A TF F +S+L++DPT EE + G MT + +G +C I KPGG
Sbjct: 186 S---LNIVNQFAATTFSVF-DDSILLVDPTVEEEDLATGLMTVIVTQDGRLCNIHKPGGT 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ I C+ A A +I I D +++
Sbjct: 242 PLSTDQIQDCIGRAQTRAKEICSLIDDTLDS 272
>gi|388514143|gb|AFK45133.1| unknown [Medicago truncatula]
Length = 286
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 138/273 (50%), Gaps = 13/273 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FIE ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGEQCFIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR-----AVD 122
L +P +P++G +SI+ + S A+P+FE + +L + R L ++ A+D
Sbjct: 64 LGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+D A +L P+ + G D +
Sbjct: 124 RSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E + + +P+ VT ++D T EE+ M ++ ++N G +C
Sbjct: 184 EVDVSDE-DFMQFDTSGIPVIVTLTKVGKH--YIVDATPEEESQMSSTVSISINRQGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+ K GG G+ SVI+ + +A ++ + K+
Sbjct: 241 GVTKRGGAGLDPSVILDMVSVAKHVSEQLINKL 273
>gi|302686574|ref|XP_003032967.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
gi|300106661|gb|EFI98064.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
Length = 291
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 9/266 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ + + E L +R DGR +R +++ G DGSS V+LG T I+ V ++
Sbjct: 32 LHPRIYYERFLEERVRPDGREFDAWRDVAVNVGSISTADGSSLVRLGDTTIVCGVKAEIA 91
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
QP D P +G + + + P F+ G P+E A L ++ L + T SL +
Sbjct: 92 QPDLDSPEDGFIVPNVDLPAICSPKFKPGPPTEEAQVLSDRLNEVLTAHDVLPTSSLIIH 151
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK W + ID ++ GN DA IA +A+L + R P ++D + +R+
Sbjct: 152 PGKAAWVLYIDATCINYDGNAFDATLIAMIAALKSTRLPRAKY--DEDTGKVTCSRHDRD 209
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
PL L +LPIA++FG F+ ++++ D T EE +M +T L +G V ++ + G G
Sbjct: 210 PLTLT--NLPIAMSFGVFNGDTIMS-DLTSFEEPLMDTNVTVILGQDGGVLSVTQ-AGMG 265
Query: 250 VLQSVIMQCLRLASRMASDITKKIKD 275
+S++ C+ AS+ S + + I +
Sbjct: 266 GGESLVDSCIASASKRRSFLAEYIYE 291
>gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
Length = 306
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 139/282 (49%), Gaps = 22/282 (7%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +RID R E R +I G GS+ V+LG T ++ V +++ P +
Sbjct: 30 FLERHLGESVRIDARRLREARPTTIALGAVSSAHGSALVRLGDTAMLASVKLEVMSPPAE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++++ P+ P GR +E A + + ++ L S ++ + LC++ GK
Sbjct: 90 HPDEGSVAVEFHMPPICSPLVRPGRSAEVAPVISKALEDVLMSSGMLNLKDLCLITGKAS 149
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG------------GEDDLEVIV 182
W +D++ L+ G+L DAA I+A+A+ P S+G G++ E++
Sbjct: 150 WLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELV- 208
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
RE L + +P+++T ++ DPT EE+++ +T ++++ + ++
Sbjct: 209 ----NREKRKLTLCDIPLSLTCALHKDS--ILADPTSEEESIIETYVTVVVDSSDRLVSL 262
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
QK GG + I +C+ LA + + + D+V+ ++
Sbjct: 263 QKVGGAVTSMATIKECISLAKERRQSLREILIDSVKAMEVDQ 304
>gi|148703326|gb|EDL35273.1| exosome component 8, isoform CRA_b [Mus musculus]
Length = 212
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 5/213 (2%)
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
+ P D P+ G + + P+ F TG P E A + + + S+ + E L
Sbjct: 1 EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 60
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPE 186
C+ GKL W + DL LD GN++DA A LA+L + PE ++ E L +
Sbjct: 61 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----N 116
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
++ L + P+A +F F ++LL++DPT EE + G +T + +G +C + KPG
Sbjct: 117 LKKKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPG 175
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G G+ + + C+ A +++K + + +++
Sbjct: 176 GSGLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 208
>gi|392568344|gb|EIW61518.1| hypothetical protein TRAVEDRAFT_35012 [Trametes versicolor
FP-101664 SS1]
Length = 287
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 133/269 (49%), Gaps = 11/269 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLV 69
++ K ++E L+ +R DGRN E+R +S+ +GS+ V+LG T ++ V ++
Sbjct: 24 LHPKTYLERFLAEDVRPDGRNLDEWRDVSVIVDSISTANGSALVRLGSTTVVCGVKAEIA 83
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P DRP G L + + P F+ G P++ A L ++ L S V T+SLC+
Sbjct: 84 EPELDRPEHGFLVPNLDLPAICSPKFKPGPPTDEAQVLSDRLNEVLVSSGVVSTKSLCIE 143
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK VW + +D ++ GN DA +A +A+L + P+ + E + +E
Sbjct: 144 PGKAVWVLYVDATCINYDGNAFDATLLAMVAALKSTTLPKATYDEETKRTICSRKVQE-- 201
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
PL I LP + +FG F +L DPT EE ++ ++ ++ +G + ++ + G G
Sbjct: 202 --PLQIGRLPTSFSFGVFDGTHILA-DPTSFEEPLLDTTISVVVDESGGLTSVMQL-GLG 257
Query: 250 VL--QSVIMQCLRLASRMASDITKKIKDA 276
++ V+ +C+ A D + + A
Sbjct: 258 IVGADDVLNKCIDAAKECWLDTRRDVYGA 286
>gi|255582593|ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
gi|223528261|gb|EEF30313.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
Length = 303
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 136/275 (49%), Gaps = 19/275 (6%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F E L+ IR DGR+ R ++ G DGS+ ++G T +M + +++ P +
Sbjct: 27 FHERHLAESIRPDGRSLGRARDTTLALGAVVSADGSAIAKIGSTTMMAAIKMEVMTPSSE 86
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG ++I P+ P GRP+E+A + + + + S +D + L +++GK
Sbjct: 87 SPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDTIMSSAMIDLKELSLVSGKAA 146
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPE-------- 186
W +D++ LD G+L DAA +A+A+ + P SL DD +V+V E
Sbjct: 147 WMAYLDIYCLDADGSLFDAALFSAVAAFTNLQIPIVSLN--DDGKVVVVSDENEGGKREK 204
Query: 187 ---EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
+E L + LP ++T ++ ++ DPT EE++M +T L+++ + +
Sbjct: 205 EAVNKEKRKLTLRSLPFSLTCVL--HKNYILADPTAEEESIMETLVTVVLDSSARLVSFY 262
Query: 244 KPGGEGV-LQSVIMQCLRLASRMASDITKKIKDAV 277
KPGG + S + C+ L + ++ + +A+
Sbjct: 263 KPGGPVLAYTSAVQDCVALTRQRVKELQNILDEAL 297
>gi|391336427|ref|XP_003742582.1| PREDICTED: exosome complex component RRP42-like [Metaseiulus
occidentalis]
Length = 289
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 12/267 (4%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRE---DGSSEVQLGQTHIMGFVTGQLVQ 70
+EK FI + +R DGR +YR + ++ G GSS V++ T ++ + ++
Sbjct: 9 SEKTFIIHGVEDNLRCDGRGCLDYRHIELELGAAPNCSGSSHVRIANTDVLVGIKAEIAA 68
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P P+ G + F + + ADP FE E ++ + R +D SLC++
Sbjct: 69 PDHAAPDRGRIEFFVDLTANADPEFEGTGGDELGQQIAGALAEAYVSKRFLDLSSLCIVK 128
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GED---DLEVIVHPPE 186
+ VW + +D+ IL+ GG+L DA +IA A+L R P+ ++ GED ++EV P
Sbjct: 129 NQQVWVLFVDILILELGGSLYDAVSIAVKAALYDLRIPKLTVSIGEDGKPEIEV-SDDPH 187
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+EPL I ++P VT S+ V+D + E M + NG + K G
Sbjct: 188 TQEPLA--IANVPCFVTLSKIGSQ--FVVDVSQEEAECSTVNMCCAIAPNGRMATTMKTG 243
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKI 273
+ +++ L+LA + + K +
Sbjct: 244 VGSLHPDSLIEALQLAQEIGVALHKAL 270
>gi|348529951|ref|XP_003452475.1| PREDICTED: exosome complex component RRP42-like [Oreochromis
niloticus]
Length = 291
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 12/240 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR + I+ DGS++V LG T ++ V ++ +P
Sbjct: 10 EKVYILHGIRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTAVLVGVKAEIGKP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P EG L F + S A P FE E EL + + R++D +SLC+ AG
Sbjct: 70 RPTVPTEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYKVFNNKRSIDLKSLCICAG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVHPPEE 187
+ W + +D+ +L GNL DA ++A A+L + P+ + +D ++E+ P
Sbjct: 130 EHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPKVHISSDDEGGKEIELSDDP--- 186
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ + L + ++P VT V+D T E+A V + ++ G + ++K GG
Sbjct: 187 YDCMRLNVENVPCIVTLCKVGHRH--VVDATLQEKACSVASLIISVTHKGTITCMRKVGG 244
>gi|395329798|gb|EJF62183.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 291
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 130/262 (49%), Gaps = 9/262 (3%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPY 72
K ++E L+ +R DGR+ E+R +S+ G DGS+ V+LG T ++ V ++ +P
Sbjct: 31 KTYLERFLAENVRPDGRDFDEWRDISVNVGSISTADGSALVRLGSTTVVCGVKAEIAEPE 90
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D+P +G L + + P F+ G P++ A + ++ L S V T SLC+ K
Sbjct: 91 LDKPKDGFLVPNLDLPAICSPKFKPGPPTDEAQVISDRLNDVLISSGVVSTSSLCIEPSK 150
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
W + +D ++ GN DA +A +A+L R P+ ++D + + + +EPL
Sbjct: 151 SAWVLYVDATCINYDGNAFDATLLAMVAALKNTRLPKARY--DEDRQQTICSRKVKEPLQ 208
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGVL 251
I LP++ +FG F +L DPT EE ++ ++ ++ G + ++ + G G
Sbjct: 209 --IGRLPVSFSFGIFDGAYILA-DPTSFEEPLLDTSVSVVVDDAGGLISVMQLGLGTADG 265
Query: 252 QSVIMQCLRLASRMASDITKKI 273
Q ++ C+ A + K +
Sbjct: 266 QDLLSTCIDAAKECWQNTRKDV 287
>gi|294868324|ref|XP_002765481.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
gi|239865524|gb|EEQ98198.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
Length = 349
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 9/142 (6%)
Query: 40 LSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPS-FETG 98
+ I+ G G +E +G+T I VTGQL P +RP EG LSI E PMA P+ +G
Sbjct: 1 MDIRLGPALGQAECSIGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSG 60
Query: 99 RPS--------ESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNL 150
S + L ++R L+ S AVD E+LC+ +G LVW +R+D+H+L + GN+
Sbjct: 61 NSSGLVGSAQTPEGISLCNQLERMLKGSNAVDVEALCIQSGSLVWELRLDVHVLSDNGNV 120
Query: 151 VDAANIAALASLLTFRRPECSL 172
DAA IA++ +L +RR E S+
Sbjct: 121 GDAAAIASIVALRHYRRAEVSV 142
>gi|217073628|gb|ACJ85174.1| unknown [Medicago truncatula]
Length = 286
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 138/273 (50%), Gaps = 13/273 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FIE ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 4 LSLGEQCFIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR-----AVD 122
L +P +P++G +SI+ + S A+P+FE + +L + R L ++ A+D
Sbjct: 64 LGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEV 180
SL V+ GK+ W + ID ++ + GNL+D A +L P+ + G D +
Sbjct: 124 RSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQP 183
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V +E + + +P+ VT ++D T EE+ M ++ ++N G +C
Sbjct: 184 EVDVSDE-DFMQFDTSGIPVIVTLTKVGKH--YIVDATPEEESQMSFTVSISINRQGHIC 240
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+ K GG G+ SVI+ + +A ++ + K+
Sbjct: 241 GVTKRGGAGLDPSVILDMVSVAKHVSEQLINKL 273
>gi|390366534|ref|XP_783510.2| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 279
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 129/275 (46%), Gaps = 12/275 (4%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
T + + L +R DGR E R + G GS+ V+LG T ++ + G+
Sbjct: 7 TAQPVEYYKQFLKEEVRPDGRELGEIRSTILNVGSISTAHGSALVKLGNTTVVCGIKGEF 66
Query: 69 VQPYRDRPNEGTLSIFT----EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
P + P +G L T + P+ F+ G PS A ++V L S ++ E
Sbjct: 67 ASPTVEEPKKGYLVYLTFPNVDLPPLCSAQFKPGPPSIQAQVTSQLVADTLLSSNLLNYE 126
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
LC+ G +VW + D+ LD GN++DA IA LA+L R P ++ ED +
Sbjct: 127 DLCIKEGNMVWVLYCDMMCLDYDGNIIDACLIALLAALRNVRLPVVTI-DEDTGLAELSS 185
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
E+R L I + A TF F +S+L++DPT EE + G MT + +G +C I K
Sbjct: 186 TEDRS---LNIVNQFAATTFSVF-DDSILLVDPTVEEEDLATGLMTVIVTQDGRLCNIHK 241
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
PGG + I C+ A A +I I D +++
Sbjct: 242 PGGTPLSTDQIQDCIGRAQTRAKEICSLIDDTLDS 276
>gi|6648187|gb|AAF21185.1|AC013483_9 putative 3' exoribonuclease [Arabidopsis thaliana]
Length = 293
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 142/281 (50%), Gaps = 22/281 (7%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FI+ ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGR-----PSESAVELGRIVDRG-------- 114
+ +P +P++G +++F + SP A+P+F GR SE A+ L R + G
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTF-GGRGGEELSSELALALQRCLLGGKSGAAIHV 121
Query: 115 LRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174
L ++ SL + GK+ W + ID ++ + GNL+DA A A+L P+ ++
Sbjct: 122 LVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSA 181
Query: 175 E--DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTAT 232
E DD + + +E E L +P+ VT + ++D T EE+ M ++ +
Sbjct: 182 EVADDEQPEIDISDE-EYLQFDTSSVPVIVTLTKVGTH--YIVDATAEEESQMSSAVSIS 238
Query: 233 LNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
+N G +C + K G G+ SVI+ + +A + + K+
Sbjct: 239 VNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 279
>gi|417398454|gb|JAA46260.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Desmodus rotundus]
Length = 291
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRGVEVETDVVSNTSGSARVRLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE E E+ + R +VD E+LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYRIFHNKSSVDLEALC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
V + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 VSPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDSIRLSVDNVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|428164594|gb|EKX33614.1| hypothetical protein GUITHDRAFT_147790 [Guillardia theta CCMP2712]
Length = 298
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 36/243 (14%)
Query: 58 THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
T ++G V+ LV P +RP EG +S+ P+AD S + R SE+ + I+ R + +
Sbjct: 46 TRVLGVVSAALVVPPAERPAEGIVSLDLLPLPLADSSTDANRASETMKDGRAILQRAIVK 105
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177
SR VD ESLCV+AGK VW + ++L +L+NGGN+ D ++AA+ SL F+ E + G D
Sbjct: 106 SRCVDVESLCVIAGKAVWKVTVELKVLENGGNVTDCCSLAAVLSLNHFKLNEVIVDG-DK 164
Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN- 236
++V F SE +++ DP+ EE VM G++ +
Sbjct: 165 VKV-------------------------FAYSERVIIADPSKLEEQVMHGQLVIIAGSKD 199
Query: 237 -GDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER-------ALRK 288
+ I K GG + S + +C +A A+++ + K+A+ N E+ ALRK
Sbjct: 200 RSMLYGISKTGGAPLPPSQLQRCCEMAIDRAAELHEVCKEALRK-NEEKTKKRDMDALRK 258
Query: 289 IKR 291
IKR
Sbjct: 259 IKR 261
>gi|330795359|ref|XP_003285741.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
gi|325084289|gb|EGC37720.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
Length = 290
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 140/281 (49%), Gaps = 27/281 (9%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG 66
+++ +E FI+ + + IR DGRN +YR S++ G +GS+ V+L T ++ V
Sbjct: 3 KISPSEVTFIQQGVENNIRSDGRNRVDYRNFSLETGEIIHANGSARVKLSDTEVLVGVKA 62
Query: 67 QL--VQPYRDRPNEGTLSIF---------TEFSPMADPSFETGRPSESA-VELGRIVDRG 114
++ +QP + TL F P A P FE G+ SE +ELG+ ++R
Sbjct: 63 EITHIQP---KELTNTLQTFDTSKRLVFSVNCCPSASPEFE-GKGSEFLNIELGKQLERL 118
Query: 115 LR-----ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 169
+ + + L +++GK W + ID +LD+ GNL DA +IA A+L R P
Sbjct: 119 YKFIFNKSNYHGNDNCLSIVSGKYYWTLYIDAIVLDSDGNLFDALSIATRAALYNTRLPR 178
Query: 170 C-SLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGK 228
++ GE + + + L L I + PI VT ++ VID T EE M +
Sbjct: 179 VKAIQGEYEEITFEVSDDPEDTLSLSIENAPICVTLTKIGTQ--FVIDSTLQEELCMDAR 236
Query: 229 MTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+T +N++ ++C+IQK G +G+ + I Q + + + + I
Sbjct: 237 LTVGINSHSNICSIQKGGIQGLDPATINQMINTSKVIGTKI 277
>gi|336372937|gb|EGO01276.1| hypothetical protein SERLA73DRAFT_179422 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385769|gb|EGO26916.1| hypothetical protein SERLADRAFT_464533 [Serpula lacrymans var.
lacrymans S7.9]
Length = 288
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 8/237 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ + ++E L+ +R DGR E+R +S+ G DGS+ V++G T ++ V ++
Sbjct: 26 LHPRAYLERFLAENVRPDGRAFSEWRDVSLNVGSISTADGSALVRMGDTTVVCGVKAEIA 85
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P D P+EG L + M F+ G P+E A L +++ L S + SLC+
Sbjct: 86 EPELDHPDEGYLVPNLDLPAMCSSKFKPGPPTEEAQVLSDRLNQALVMSGVISLSSLCIH 145
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
+G+ VW + +D ++ GN DA +A +A+L R P+ S E V +
Sbjct: 146 SGRSVWTLYVDATCINYAGNAFDATLLAMVAALKNTRIPQASFDEESGRTVC----SRKN 201
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+PL + P + +FG F + +L DPT EE ++ + ++ ++ ++ G
Sbjct: 202 RVPLTLSRFPTSASFGIFDASQILA-DPTAFEEPLLDATVCVVVDEEPELISVNGVG 257
>gi|6466958|gb|AAF13093.1|AC009176_20 hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 144/285 (50%), Gaps = 26/285 (9%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L++ E+ FI+ ++ +R DGR YR + ++ G + +GS+ V++G T ++ V +
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGR-----PSESAVELGRIV-----DRGLRE 117
+ +P +P++G +++F + SP A+P+F GR SE A+ L R + GL+
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTF-GGRGGEELSSELALALQRCLLGGKSGAGLQS 121
Query: 118 S-------RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC 170
S ++ SL + GK+ W + ID ++ + GNL+DA A A+L P+
Sbjct: 122 SIHVLVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKV 181
Query: 171 SLGGE--DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGK 228
++ E DD + + +E E L +P+ VT + ++D T EE+ M
Sbjct: 182 NVSAEVADDEQPEIDISDE-EYLQFDTSSVPVIVTLTKVGTH--YIVDATAEEESQMSSA 238
Query: 229 MTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
++ ++N G +C + K G G+ SVI+ + +A + + K+
Sbjct: 239 VSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 283
>gi|358418234|ref|XP_003583876.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
gi|359078399|ref|XP_003587703.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
Length = 291
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R ++D +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA ++A A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V I+
Sbjct: 186 P---YDCIQLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCIR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|225711778|gb|ACO11735.1| Exosome complex exonuclease RRP43 [Caligus rogercresseyi]
Length = 279
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 128/269 (47%), Gaps = 10/269 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRN-----PFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQ 67
V K + + G+R+DGR S DGS+ V+ G T ++ +T Q
Sbjct: 10 VQPKEYFSQHIEKGLRLDGREGGLESIRPISISSGSIASADGSAIVRKGHTTVICGITLQ 69
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSF--ETGRPSESAVELGRIVDRGLRESRAVDTES 125
+ + P +G + + M P G +E A+ L + + + S VD +
Sbjct: 70 IASLDEETPTKGYIVPHVDLPSMCHPRIYKSKGPTAEEAMILTKFIMDVILNSEVVDPKD 129
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE-CSLGGEDDLEVIVHP 184
LC++ G++VW ++IDL L+ GNL DA A + +L + R P+ S ED+ + ++
Sbjct: 130 LCIVPGEIVWVLKIDLTCLNQDGNLRDALVTALILALKSLRFPKVVSYKAEDEDKTQIN- 188
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
E+E L + ++P++V+ E LLV DPT EE +T LNA ++C + K
Sbjct: 189 VFEKEHSSLRLKNIPVSVSIAVMEGERLLV-DPTDEEETFATDSITVVLNAEEELCYLSK 247
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKI 273
GGE + ++ + + LA A + K I
Sbjct: 248 NGGEPIFDELMNKVIDLARAQALTVRKLI 276
>gi|83283987|gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
Length = 303
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 15/280 (5%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L +R D R R ++ G +GS+ ++G T ++ + +++ P
Sbjct: 26 RYHEQHLLKSVRPDARKLGSARDTTLALGAVASAEGSALAKIGSTTMLAAIKMEIMTPTV 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG+++I P+ P GRP+E A + + + + S +D + LC++ GK
Sbjct: 86 ECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVISKQLSDTILSSGMIDLKELCLVGGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG--------GEDDLEV-IVHP 184
W +D++ LD G+L DAA ++ +A+ P SL ED++++ +
Sbjct: 146 AWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIPVVSLNEDGRIVLVSEDNIQLKLEKQ 205
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
P E L ++ P ++T ++ ++ DPT EE++M +T L+++ + ++ K
Sbjct: 206 PVNTEKRKLKLNSPPFSLT--CLLHKNYILADPTAEEESIMETAVTVVLDSSYQLVSLYK 263
Query: 245 PGGE-GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTE 283
PGG SVI C+ LA R ++ + +A+ E
Sbjct: 264 PGGPVHAHTSVIQDCVALAKRRVKELQSVLNEAISDMEVE 303
>gi|452825084|gb|EME32083.1| exosome complex component RRP42 [Galdieria sulphuraria]
Length = 275
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 15/240 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK ++ + +G R+DGR FEYR +S++ G GSS ++LG+T ++ V + V
Sbjct: 8 EKAYLLDTIETGTRLDGRQLFEYRPISLQVGVLPSASGSSRLRLGETEVLVGVKVE-VGD 66
Query: 72 YRDRPNEGTLSIFT-EFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVL 129
+ N+ +FT E S A F GR +ES + EL ++ R + D E L ++
Sbjct: 67 VVESSNDNVQLLFTVECSGSASADF-LGREAESWSSELQNALESAYRAANVFDDERLSLV 125
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL---GGEDDLEVIVHPPE 186
GK W ++D+ +LD GGN++DA ++A +L T P + G +LE I P+
Sbjct: 126 PGKFCWLFKVDILVLDTGGNMMDAISMATRTALSTTLVPRVHIVQSEGSFELE-IDDNPD 184
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ L + P +TF + V+DP+ EE GK++ ++ANGD+C + G
Sbjct: 185 ACDTLK--VEKAPTFLTFSLIGNH--FVLDPSIQEETCARGKLSVAVDANGDICHVYSFG 240
>gi|226372666|gb|ACO51958.1| Exosome complex exonuclease RRP42 [Rana catesbeiana]
Length = 291
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 126/270 (46%), Gaps = 12/270 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK ++ + +R DGR +YR + ++ GS+ V++G T ++ V ++ P
Sbjct: 10 EKVYVVHGVQDDLRTDGRGCEDYRWIELETDVVSNTTGSARVKIGHTDVLVGVKAEMSTP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
DRP EG L F + S A P FE E E+ ++ + ++D ESLC+L
Sbjct: 70 KLDRPCEGYLEFFVDCSANATPEFEGRGGEELGTEIANMLYKVFDNKSSIDLESLCILPR 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEE 187
+ W + ID+ +L GG+L D +I A+L R P+ S+ GG ++E+ P
Sbjct: 130 EHCWTLYIDVLLLHCGGSLFDTISIGVKAALFNTRIPKVSVLEDDGGNKEIELSDDP--- 186
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ + L + ++P +T V+D T EEA + + +N G + ++K G
Sbjct: 187 YDCMRLNVENVPCIITLCKIGHRH--VVDATLQEEACSLASVLVAINIKGTLTCMRKMGK 244
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ I + + R+A + +++ +
Sbjct: 245 GSLDPECIFEMIETGKRVAKSLHLSLRNVL 274
>gi|443926780|gb|ELU45348.1| Opa-interacting protein OIP2 [Rhizoctonia solani AG-1 IA]
Length = 294
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 7/230 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ + + E ++ G R DGR +R + I G +GSS V++G + I+ V ++
Sbjct: 22 LHPRTYFERFIAEGFRPDGRKVDAWRDVRINVGSISTANGSSLVRIGDSTIVCGVKAEIA 81
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGR---IVDRGLRESRAVDTESL 126
+P +RP+EG + + + P F+ G P+E A L I+ + S A+D ++L
Sbjct: 82 EPDLERPSEGFIVPNLDLPAICSPKFKPGPPAEEAQMLSEKITILTKLTYSSNAIDPKTL 141
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPE 186
C+ GK W I +D ++ GN++DA +A +A+L P DL+
Sbjct: 142 CIHPGKAAWVIYVDAVCINYDGNILDATMLAVVAALQNGILPARIPVPTYDLDTGRTTCS 201
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
E LPL + H+P+ ++FG F + L+ DP+ EE ++ +T T++ +
Sbjct: 202 RTETLPLALTHMPVTISFGIF-DRAHLISDPSSFEEPLLDAAITVTIDVS 250
>gi|390474971|ref|XP_002807638.2| PREDICTED: exosome complex component RRP42 [Callithrix jacchus]
Length = 291
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIMHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGMPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ A + W + +D+ +L+ GNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISAREHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT + V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYQH--VVDATLQEEACSLASLLVSVTSKGVVTCLR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|426249669|ref|XP_004018572.1| PREDICTED: exosome complex component RRP42 [Ovis aries]
Length = 291
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCDDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R ++D +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASAAPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCVQLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCVR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|58381777|ref|XP_311461.2| AGAP010483-PA [Anopheles gambiae str. PEST]
gi|55242661|gb|EAA07136.2| AGAP010483-PA [Anopheles gambiae str. PEST]
Length = 303
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 26/298 (8%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIM 61
+AN L+ EK +I + +R DGR +YR + + GS+ ++L T I+
Sbjct: 1 MANVL-LSEAEKTYILHGIQKNMRNDGRTNRDYRPMEFESEIVVHAAGSARLRLANTDIL 59
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRA 120
V ++ P DRPNEG + F + S A P FE GR E A E+ + + +
Sbjct: 60 VGVKAEIDTPNPDRPNEGKVDFFIDCSANATPEFE-GRGGEQLATEISNTLSKAYESQKG 118
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGED 176
D LC++AG W + +D+ IL+ GGNL DA ++A +L R P S GG
Sbjct: 119 FDLAGLCIMAGHQCWKLYVDVLILECGGNLFDAVSLAVKGALFNTRIPRVSTAMHDGGSM 178
Query: 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA- 235
DL ++ P + E L + PI VT + V+DP+ EE V + ++
Sbjct: 179 DL-ILTDDPYDCERLD--VTTAPILVTVCKIGDQC--VVDPSAEEEECSVASVAVGVSCR 233
Query: 236 -NGDVCAIQ-----KPGGEGVLQ-SVIMQCLRLASRMASDITKKIKDAV---ETYNTE 283
+G+ Q + GEG ++ + +C A+ + + + K + A+ ET N++
Sbjct: 234 PDGNTTTKQSITTVRTSGEGSIRLETLKKCFDTATTVGASLNKALMKALHEDETRNSK 291
>gi|124487127|ref|NP_001074657.1| exosome complex exonuclease RRP42 [Mus musculus]
gi|408360083|sp|Q9D0M0.2|EXOS7_MOUSE RecName: Full=Exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|66267444|gb|AAH94932.1| Exosome component 7 [Mus musculus]
gi|124376042|gb|AAI32364.1| Exosome component 7 [Mus musculus]
gi|148677125|gb|EDL09072.1| mCG23310, isoform CRA_b [Mus musculus]
gi|148877509|gb|AAI45676.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|426340209|ref|XP_004034025.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
gi|426340211|ref|XP_004034026.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
Length = 291
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|302786484|ref|XP_002975013.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
gi|300157172|gb|EFJ23798.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
Length = 288
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 31/278 (11%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ +E +IE + +R DGR + +R LSI+ G + +GS+ V+LG T ++ V +
Sbjct: 4 LSRSELDYIEGGVKHDLRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDVIVSVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA-VELGRIVDRGLR-----ESRAV 121
L P RPN G++ + E S A P FE GR E +EL R + R A+
Sbjct: 64 LGSPRSGRPNYGSIEVMVECSATAGPEFE-GRGGEDLNMELSRALQRCFVGGPSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG----ED- 176
D +L ++A K W + +D ++++ GNL+DA +I A+L P + G ED
Sbjct: 123 DLSTLGIVASKFCWELFVDCLVVNSDGNLLDALSIG--AALSNTGIPSVKVTGNTASEDD 180
Query: 177 -DLEVIVHPPE----EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTA 231
DLEV +P E + +PLII I + ++D T EE M ++
Sbjct: 181 ADLEVGDNPDEFARLDASKVPLIITLTKIGRHY---------IVDATPEEEMGMSSAVSV 231
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+N+ G + + K G G+ SV+ + +A +A D+
Sbjct: 232 AVNSKGLILGLTKRGDGGLDPSVVTDMISVAKHIARDL 269
>gi|338714956|ref|XP_001496279.3| PREDICTED: exosome complex component RRP42-like [Equus caballus]
Length = 291
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVDVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|395843587|ref|XP_003794559.1| PREDICTED: exosome complex component RRP42 [Otolemur garnettii]
Length = 291
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA ++A A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|345091073|ref|NP_001230753.1| exosome component 7 [Sus scrofa]
Length = 291
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE E E+ + R ++D +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYRIFNNKGSIDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + + + G V ++
Sbjct: 186 P---YDCIQLNVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVAVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|449018566|dbj|BAM81968.1| similar to exosome complex exonuclease RRP45 [Cyanidioschyzon
merolae strain 10D]
Length = 519
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 119/253 (47%), Gaps = 30/253 (11%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
NE F+ +L +R+DGR P E R+L + E G T ++V P
Sbjct: 9 NELLFVLQSLP--LRVDGRRPEEARRLRFQLVGESGVLVFAGSSAITFATTTCRVVAPPP 66
Query: 74 DRPNEGTLSIFTEFSPMADP----------SFETGRPSESAVELGRIVDRGLRESRAVDT 123
RP EG + + SP A SF SE AV L RI LRESR +D
Sbjct: 67 HRPTEGWIRVVYGISPGASERTLLEQSDAVSF-----SEEAVFLERI----LRESRCIDP 117
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEVI 181
ESLC++AGK + + + + + G+ + A++AAL SL FRRP+ ++ G D V
Sbjct: 118 ESLCIVAGKYAFQVTVQVCVESLDGSGLFYASLAALGSLQRFRRPDFTIERHGYGDERVR 177
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFF------SSESLLVIDPTHHEEAVMVGKMTATLNA 235
+ P ER P+PL + P+ + + F S E+ V+DPT EE ++ +
Sbjct: 178 LFSPRERPPVPLQLQVYPVILEYALFFDEHRGSQETCCVLDPTQAEENACHARLRVVYDV 237
Query: 236 -NGDVCAIQKPGG 247
N + A+++ G
Sbjct: 238 KNERLLALRQLAG 250
>gi|473949|dbj|BAA06226.1| KIAA0116 [Homo sapiens]
Length = 290
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 5 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 64
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 65 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 124
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 125 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 184
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 185 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 239
Query: 244 KPG 246
K G
Sbjct: 240 KVG 242
>gi|321458150|gb|EFX69223.1| hypothetical protein DAPPUDRAFT_301019 [Daphnia pulex]
Length = 276
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 134/276 (48%), Gaps = 9/276 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
T+ F +T L R DGR E+RK+++ G DGS+ V+ G T ++ + +L
Sbjct: 7 TLQPLEFYKTFLDRKSRPDGRKLLEFRKMTLNAGSIGTADGSAIVKCGNTTVICGIKAEL 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P R+ P++G + + ++G P E+A + + + + +D E+LC+
Sbjct: 67 AAPEREEPSKGFIIPNVTLPSLCSSQIKSGPPGETAQAATQFIAELVNNNIIMDLETLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
K W + DL ++ G+L+DA +A +A+L + P S +++++ ++ P+E+
Sbjct: 127 KVSKWAWVLHCDLLCINLDGSLLDACVMALVAALKNLKLPIVSY--DEEMDKLISNPDEK 184
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
I P+ TF F + +L+ DPT EE + G + T+ V + KPGG
Sbjct: 185 MGFDTIKQ--PVTSTFSLFDN-GILISDPTFEEEQLAAGLTSITMEGTS-VTHMYKPGGC 240
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
+ + + + ++ + ++ + I++A + ER
Sbjct: 241 TLDEKQVKKLIQQSELKTKEVARLIEEACSSSIAER 276
>gi|122920911|pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 305
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 20 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 79
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 80 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 139
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 140 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 199
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 200 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 254
Query: 244 KPG 246
K G
Sbjct: 255 KVG 257
>gi|340377723|ref|XP_003387378.1| PREDICTED: exosome complex component RRP42-like [Amphimedon
queenslandica]
Length = 281
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 130/262 (49%), Gaps = 5/262 (1%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
E +I+ + + +R DGR+ +YR ++ G GS+E++L +T+I+ V ++ QP
Sbjct: 10 EISYIKQGVLADMRSDGRSCRDYRSFELRSGIVSNTSGSAEIKLERTNILVGVKAEIGQP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
PN+G + F + S +A P FE R + L + S +D ESL ++ G
Sbjct: 70 NPLNPNKGRIEFFVDCSALASPKFEGRRGEDLGRNLAHRLSDLYENSNCIDLESLSIIPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W I +D +L+ G ++D +IA +L + P+ ++ GE + + I +
Sbjct: 130 QDCWIIYVDALVLEYSGGVLDCLSIAVKGALANTKIPKLTVIGEGEEQEIEISDNPFDST 189
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
+ +++P+ V+ ++ ++D +H EEA + +++ +N G +C+I K G
Sbjct: 190 SIDTNNVPVFVSLSLIGNQ--FIVDASHEEEACSLCQLSVGVNHKGSICSILKEGAGSFK 247
Query: 252 QSVIMQCLRLASRMASDITKKI 273
+ + LAS + + +KI
Sbjct: 248 HRQYNEAISLASEIGVSVIEKI 269
>gi|30962875|gb|AAH52656.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFDTRIPRVRVLEDEEGAKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|189083688|ref|NP_055819.2| exosome complex component RRP42 [Homo sapiens]
gi|322510129|sp|Q15024.3|EXOS7_HUMAN RecName: Full=Exosome complex component RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42; AltName: Full=p8
gi|119585135|gb|EAW64731.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585136|gb|EAW64732.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585137|gb|EAW64733.1| exosome component 7, isoform CRA_a [Homo sapiens]
Length = 291
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|213688370|ref|NP_001094195.1| exosome component 7 [Rattus norvegicus]
gi|149018124|gb|EDL76765.1| exosome component 7 [Rattus norvegicus]
Length = 291
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P +RP+EG L F + S A P FE + E+ + R +VD SLC
Sbjct: 66 MGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|332215753|ref|XP_003257009.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
gi|332215755|ref|XP_003257010.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
Length = 291
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|395733899|ref|XP_002813914.2| PREDICTED: exosome complex component RRP42 [Pongo abelii]
gi|395733901|ref|XP_003776313.1| PREDICTED: exosome complex component RRP42 [Pongo abelii]
Length = 291
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENIPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|432881537|ref|XP_004073829.1| PREDICTED: exosome complex component RRP42-like [Oryzias latipes]
Length = 291
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 6/244 (2%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFV 64
T +++ EK +I + +R+DGR+ +YR + ++ DGS+ V LG T ++ +
Sbjct: 3 TVKVSEAEKVYILHGIRDDLRVDGRSCEDYRHMEVETDVVSNTDGSARVSLGHTAVLVGI 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ +P P+EG L F + S A P FE E +EL + R ++D +
Sbjct: 63 KAEIGKPRPLVPDEGYLEFFVDCSANATPEFEGRGGEELGIELSNTLYRVFNNKNSIDLK 122
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP 184
LC+ AG+ W + +D+ +L GNL DA ++A A+L + P + +D+ V
Sbjct: 123 GLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPRVHMSSDDEGGKEVEL 182
Query: 185 PEE-REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
++ + + L + ++P VT V+D T E+A V + + G V ++
Sbjct: 183 SDDPFDCVRLSVENVPCIVTLCKVGHRH--VVDATLQEKACSVASLIIAVTHRGTVTCVK 240
Query: 244 KPGG 247
K GG
Sbjct: 241 KVGG 244
>gi|15215485|gb|AAH12831.1| Exosome component 7 [Homo sapiens]
gi|168272912|dbj|BAG10295.1| exosome complex exonuclease RRP42 [synthetic construct]
Length = 291
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|189055112|dbj|BAG38096.1| unnamed protein product [Homo sapiens]
Length = 291
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGREDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|357631022|gb|EHJ78761.1| exosc7 protein [Danaus plexippus]
Length = 310
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 12/233 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ +EK +I + R DGR+ +YR + ++ GS+ ++L T I+ V +
Sbjct: 6 LSPSEKVYILHGIEDDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P D+PN+G + F + S A P FE + A + ++ R +A D + LC
Sbjct: 66 IDVPKPDKPNQGKIDFFVDCSANATPEFEGRGGEQLANNISNLMQRAYHSQQAFDLKQLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSL--GGEDDLEVIVH 183
+L GK W + +D+ IL+ GGNL DA ++A A+L R P + +L GG DL++
Sbjct: 126 ILEGKQCWKLYVDILILECGGNLCDAVSLAVKAALFNTRIPFVKAALLDGGNVDLQLSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
P + + L + P+ VT + V+DP+ EE+ V + + N
Sbjct: 186 PYDSK---LLEVGTAPLLVTLCKIGEKC--VVDPSAEEESCSVISLVVGVTGN 233
>gi|353681756|ref|NP_001238821.1| exosome complex component RRP42 [Pan troglodytes]
gi|410206888|gb|JAA00663.1| exosome component 7 [Pan troglodytes]
gi|410246930|gb|JAA11432.1| exosome component 7 [Pan troglodytes]
gi|410287270|gb|JAA22235.1| exosome component 7 [Pan troglodytes]
gi|410328427|gb|JAA33160.1| exosome component 7 [Pan troglodytes]
Length = 291
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P +T V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIITLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|308322117|gb|ADO28196.1| exosome complex exonuclease rrp42 [Ictalurus furcatus]
Length = 291
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 12/247 (4%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFV 64
T +++ EK +I + +R+DGR +YR + I+ DGS++V LGQT I+ +
Sbjct: 3 TIQVSEAEKVYIMHGVRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGI 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ +P P+EG L F + S A P FE E VEL + + ++D
Sbjct: 63 KAEIGRPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNNLYKVFNNRHSLDLR 122
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEV 180
SLC+ G+ W + +D+ +L GNL DA +IA A+L R P+ + G ++E+
Sbjct: 123 SLCISPGESCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPKVHISEDEEGGKEIEL 182
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
P + + L + ++P VT V+D T E++ V + ++ G V
Sbjct: 183 SDDP---YDCMRLNVENVPCIVTLCKIGHRH--VVDATLQEKSCSVASLLISVTHKGTVT 237
Query: 241 AIQKPGG 247
++K GG
Sbjct: 238 CVRKLGG 244
>gi|405963081|gb|EKC28685.1| Exosome complex exonuclease RRP42 [Crassostrea gigas]
Length = 262
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 5/235 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK FI+ + R DGR +YR + ++ G GS+ V+L T I+ V +L P
Sbjct: 10 EKIFIKHGVQDNCREDGRGCEDYRHIELETGLLSNTTGSARVRLANTDILAGVKAELGTP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
D+PN+G L F + S A P FE E A E+G I+ R D E+LC++
Sbjct: 70 SPDKPNKGRLEFFVDCSANATPVFEGRGGEELAAEIGNILTRTYDCPSCFDLEALCIIPE 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W + +D+ +L+ GGNL D A+IA A+L + P+ ++ ++ L + + +
Sbjct: 130 EQCWILYVDVLLLECGGNLFDVASIAVKAALYNTKIPKVTVSRDEGLVELEISDDPYDVQ 189
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ + P VT V+D + EEA + ++T + V ++K G
Sbjct: 190 RVEVQSAPCIVTVCKIGHSH--VVDASLKEEACCLARLTMGVTERRTVTGVRKEG 242
>gi|443685755|gb|ELT89253.1| hypothetical protein CAPTEDRAFT_159382 [Capitella teleta]
Length = 287
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 18/244 (7%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + G+R DGR +YR + I+ +GSS V++ T I+ V +
Sbjct: 6 LSEAEKTFILHGVQDGLRQDGRTSEDYRCVEIETNVVSNSNGSSRVRMANTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESL 126
+V+P ++P G + F + S A P+FE GR E A E+ ++D + +D E+L
Sbjct: 66 IVEPETEQPKNGRVEFFVDCSANATPAFE-GRGGEDLATEIASLLDLSVH----LDLEAL 120
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEVIV 182
C+++GK W + +D+ IL+ GGNL DA +A ++L R P ++ GE ++E+
Sbjct: 121 CIISGKQCWLLYVDVLILECGGNLFDAVALAVKSALHQTRIPLVTVSVGERGEAEIELSD 180
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P + + + ++P VT V+D EEA + K+ + NG + ++
Sbjct: 181 DPFDCKR---VGTDNVPCLVTLNKIGLAH--VVDACLEEEACSLAKVVFGVTENGSISSM 235
Query: 243 QKPG 246
+K G
Sbjct: 236 RKIG 239
>gi|321475502|gb|EFX86465.1| hypothetical protein DAPPUDRAFT_222073 [Daphnia pulex]
Length = 290
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 117/244 (47%), Gaps = 14/244 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + +R DGR +YR + ++ G GS+ ++L + I+ V +
Sbjct: 6 LSEAEKAFIHHGVQDDLRCDGRTRLDYRPIILETGLVSNASGSARLRLANSDILVGVKVE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESL 126
L P D+P EG L F + S A P FE GR E A E+ R + R ++ L
Sbjct: 66 LASPLPDKPQEGRLEFFVDCSANATPEFE-GRGGEDLANEICRFLQRSYASGDTINLSEL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIV 182
VL G+ W + +D+ IL+ GGNL DA ++A ++L + P + G + +LE+
Sbjct: 125 SVLTGQQCWVLYVDILILECGGNLYDAVSLAVKSALYATQIPSIKVATMDGDQPELELSD 184
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P + + L ++P VT + L +DPT EE + ++ N + A+
Sbjct: 185 DPYDTKR---LNTENIPCVVTLMKIGNHYL--VDPTPEEECCSSSGIVVAVSGNKKITAV 239
Query: 243 QKPG 246
+K G
Sbjct: 240 RKIG 243
>gi|225716114|gb|ACO13903.1| Exosome complex exonuclease RRP42 [Esox lucius]
Length = 291
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 12/247 (4%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFV 64
T +++ EK +I + +R+DGR +YR + I+ DGS++V LG T ++ V
Sbjct: 3 TVQVSEAEKVYILHGVRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGHTDVLVGV 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ +P P+EG L F + S A P FE E VEL + + ++D +
Sbjct: 63 KAEIGKPRPMVPHEGYLEFFVDCSANATPEFEGRGGDELGVELSNTLYKVFNNRSSIDLK 122
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEV 180
SLC+ G+ W + +D+ +L GNL DA ++A A+L + P+ L G ++E+
Sbjct: 123 SLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHLSENEEGGKEIEL 182
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
P + + L + ++P VT V+D T E+A V + ++ G +
Sbjct: 183 SDDP---YDCMRLNVENVPCIVTLCKVGYRH--VVDATLQEKACSVASLIISVTHKGTIT 237
Query: 241 AIQKPGG 247
++K GG
Sbjct: 238 CVRKVGG 244
>gi|302791331|ref|XP_002977432.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
gi|300154802|gb|EFJ21436.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
Length = 288
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 31/278 (11%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ +E +IE + +R DGR + +R LSI+ G + +GS+ V+LG T ++ V +
Sbjct: 4 LSRSELDYIEGGVKHDLRSDGRGRYHFRNLSIQVGIIPQANGSARVRLGGTDLIVSVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA-VELGRIVDRGLR-----ESRAV 121
L P RPN G++ + E S A P FE GR E +EL R + R A+
Sbjct: 64 LGSPRSCRPNYGSIEVMVECSATAGPEFE-GRGGEDLNMELSRALQRCFVGGPSGAGAAI 122
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG----ED- 176
D +L ++A K W + +D ++++ GNL+DA +I A+L P + G ED
Sbjct: 123 DLSTLGIVASKFCWELFVDCLVVNSDGNLLDALSIG--AALSNTGIPSVKVTGNTASEDD 180
Query: 177 -DLEVIVHPPE----EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTA 231
DLEV +P E + +PLII I + ++D T EE M ++
Sbjct: 181 ADLEVGDNPDEFARLDASKVPLIITLTKIGRHY---------IVDATPEEEMGMSSAVSV 231
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+N+ G + + K G G+ SV+ + +A +A D+
Sbjct: 232 AVNSKGLILGLTKRGDGGLDPSVVTDMISVAKHIARDL 269
>gi|348582602|ref|XP_003477065.1| PREDICTED: exosome complex component RRP42-like [Cavia porcellus]
Length = 291
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 128/274 (46%), Gaps = 12/274 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR+ +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRSCEDYRSVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++P EG L F + S A P FE + E+ + R +VD +SLC
Sbjct: 66 MGTPKLEKPEEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNRSSVDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA ++ A+L R P+ + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISVTVKAALFNTRIPKVRVLEDEEGAKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCMQLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSEGVVTCVR 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
K G + I + + R+ + ++D +
Sbjct: 241 KVGKGSLDPESIFEMMETGKRVGKVLHASLRDVL 274
>gi|156366152|ref|XP_001627004.1| predicted protein [Nematostella vectensis]
gi|156213900|gb|EDO34904.1| predicted protein [Nematostella vectensis]
Length = 266
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 11/258 (4%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG 66
+L+V E+ FI + R DGR+ +YR ++ G GS+ ++L T I+ V
Sbjct: 5 QLSVYEREFIISGAEQDYRSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILVGVKA 64
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
++ +P P G + F + S A F + A +L R +DR A+D SL
Sbjct: 65 EIGEPNLLTPGCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAIDLSSL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL---GGEDDLEVIVH 183
++ G+ W + +D +L+ GGNL DA ++A A+L R P ++ GGE +LE+
Sbjct: 125 SIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELEISDD 184
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + P +PI +T V+D + EE + +N+ G+VC Q
Sbjct: 185 PYDCHQLPP---DQMPIIITLSKIGGRH--VVDASQSEELCSDCHLLVAVNSCGNVCGQQ 239
Query: 244 KPGGEGVLQSVIMQCLRL 261
K G G+ I + L +
Sbjct: 240 KIGCGGLEPDTICEMLEV 257
>gi|213983243|ref|NP_001135527.1| uncharacterized protein LOC100216070 [Xenopus (Silurana)
tropicalis]
gi|156229972|gb|AAI52124.1| Zgc:110717 protein [Danio rerio]
gi|195539973|gb|AAI67984.1| Unknown (protein for MGC:180975) [Xenopus (Silurana) tropicalis]
Length = 291
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 12/240 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR + I+ DGS+++ LG T ++ + ++ +P
Sbjct: 10 EKVYIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
PNEG L F + S A P FE E VEL + + ++D SLC+ G
Sbjct: 70 RPMVPNEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEVIVHPPEE 187
+ W + +D+ +L GNL DA +IA A+L R P+ + G ++E+ P
Sbjct: 130 ENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDP--- 186
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ + L + ++P VT V+D T E+A V + + G V ++K GG
Sbjct: 187 FDCMRLNVENVPCIVTLCKIGHRH--VVDATLQEKACSVASLLIAVTHTGMVTCVRKMGG 244
>gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 129/254 (50%), Gaps = 11/254 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
+++ L +R DGR+ E R L + D S+ ++LG T ++ +T + ++P
Sbjct: 20 LKSFLQRDVRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITAETIKPAAAT 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P +G+ S+ EFS + P+ + G P+E A + +D L++ +T LC+ L W
Sbjct: 80 PKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGILKQ--VFETNQLCIEPDLLAW 137
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ ID++ L++ GN+ DAA ++ ++SL + PE ++ E V+ E++ P+ L
Sbjct: 138 TLFIDVYCLEDDGNVTDAAMMSVISSLRDLKLPEITIDEETAKPVVNL--EKQSPVDL-- 193
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
P++ T+G FS +L++DPT E + +T + G + + GG + Q +
Sbjct: 194 KMFPVSTTYGEFS--GILLLDPTARETELGSSPITVVCSEKGALLCFNRSGGSPLSQEQV 251
Query: 256 MQCLRLASRMASDI 269
+ + R +S I
Sbjct: 252 AAAIENSKRRSSTI 265
>gi|37359778|dbj|BAC97867.1| mKIAA0116 protein [Mus musculus]
Length = 286
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T + V +
Sbjct: 1 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDFLVGVKAE 60
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD SLC
Sbjct: 61 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLC 120
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 121 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDD 180
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 181 P---YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 235
Query: 244 KPG 246
K G
Sbjct: 236 KVG 238
>gi|410950992|ref|XP_003982186.1| PREDICTED: exosome complex component RRP42 [Felis catus]
Length = 291
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL D +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWILYVDVLLLECGGNLFDTISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|196004466|ref|XP_002112100.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
gi|190585999|gb|EDV26067.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
Length = 288
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 133/269 (49%), Gaps = 12/269 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ K+FI ++ R DGR ++R+ I+ G +GS+ ++ T ++ + +
Sbjct: 6 LSEGRKQFIVDGVTQDCRADGRRCIDFRRFQIETGIVSNTNGSARLRQYGTDVLVGIKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ QP ++R N G L + + S + G + +L + ++R +D +SL
Sbjct: 66 IGQPKQERSNTGHLEFYVDCSSYNTTEID-GHIGDFTTQLTKSLERIYDSENVLDLKSLT 124
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED---DLEVIVHP 184
++AG+ VW + ID +L+ GNL+D +IA A+L R P S+ E+ +LE+ P
Sbjct: 125 IIAGEQVWVLYIDAVVLECCGNLLDCISIAVKAALYNTRIPGVSVNDEEGVLELEISDDP 184
Query: 185 PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+E++ L I +P+ V+ V+D T EE G++ +N ++C++QK
Sbjct: 185 NDEKK---LSIDKVPVIVSCNKIGHR--YVVDATQEEECCSSGRLLIAVNDRNNICSLQK 239
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKI 273
G + S I + + A + A + +++
Sbjct: 240 SGTGSLDPSTIFEMIETARQAAVPLNQEL 268
>gi|301097627|ref|XP_002897908.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
gi|262106656|gb|EEY64708.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
Length = 295
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 14/277 (5%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQL--GQTHIMGFV 64
+++ +EK +I +++ +R DGR+ YR LS++ + +GS+ L T ++ V
Sbjct: 3 KVSSSEKDYIVEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASV 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ P + PN G + + P E VEL +++ R L + + E
Sbjct: 63 KLEVASPLPEDPNAGIVQVDVSCCPSVSAKLYGRAVEELNVELSQLMTRLLCSCPSAELE 122
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL---GGEDD-LEV 180
C++ G+ VW+I ID+ + ++ GNL D ++A A+L P L GED +EV
Sbjct: 123 KYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTIFPSVRLVGVEGEDKTIEV 182
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
P + ++ PI VT + DP EE +M+ +N +G+VC
Sbjct: 183 DTDPAAGK---LMMAQQWPICVTLSKIG--DYFITDPLQEEELCTTAQMSVAVNPDGNVC 237
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
+QK G + + Q + A + D+ K ++ A+
Sbjct: 238 GVQKSGNGSIEMEEMQQMIDEACARSKDLFKLLQKAL 274
>gi|410911694|ref|XP_003969325.1| PREDICTED: exosome complex component RRP42-like [Takifugu rubripes]
Length = 291
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 12/240 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR + I+ DGS++V LG T ++ + ++ +P
Sbjct: 10 EKVYILHGIRDDLRVDGRGCEDYRHMEIETDVVSNTDGSAKVTLGHTVVLVGIKTEIGKP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
PNEG L F + S A P FE E EL + R ++D + LC+ G
Sbjct: 70 RPMVPNEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYRVFNNKHSIDLKRLCISPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVHPPEE 187
+ W + +D+ +L GNL DA +IA A+L + P+ + +D D+E+ P
Sbjct: 130 EHCWVLYVDVLLLQCDGNLYDAMSIAIKAALFNTKIPKVFISSDDEGGKDIELSDDP--- 186
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ + L + ++P VT ++D T E+A V + ++ G V +K GG
Sbjct: 187 YDCMRLNVENVPCIVTLCKVGHRH--IVDATLQEKACSVASLIMSVTHKGTVTCTRKVGG 244
>gi|91079418|ref|XP_967497.1| PREDICTED: similar to exosome complex exonuclease rrp42 (ribosomal
RNA processing protein 42 [Tribolium castaneum]
gi|270003471|gb|EEZ99918.1| hypothetical protein TcasGA2_TC002710 [Tribolium castaneum]
Length = 285
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 131/276 (47%), Gaps = 17/276 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK F+ + R+DGR +YR + ++ GS+ ++L T ++ V ++ P
Sbjct: 7 EKTFVLHGVEENFRVDGREREDYRPIELETNIVSHAFGSARLRLANTDVLVAVKIEVDVP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVLA 130
Y +RP EG L F + S A P FE GR E A+E+ + + D LC+L
Sbjct: 67 YPERPKEGKLEFFVDCSANATPDFE-GRGGEDLAIEISNSLSAAYKSPEVFDLTKLCILK 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP---ECSLGGED-DLEVIVHPPE 186
G W I +D+ +L+ GGNL DA +IA A+L R P ++ G + D+EV E
Sbjct: 126 GHKCWKIFVDILLLECGGNLYDAVSIAVKAALWDTRIPLVKSVTVDGNNVDMEV---SDE 182
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ L + PI VT + ++DP EE VG + ++ + +Q
Sbjct: 183 LHDCQKLDVTAAPIMVTVCKIGEQC--IVDPNVAEELCSVGAVVIAVSKDKFSTVLQI-- 238
Query: 247 GEGVLQ-SVIMQCLRLASRMASDITKKIKDAVETYN 281
G G L +++CL++ ++A +++ + + + N
Sbjct: 239 GSGSLHPQTLLECLQMGEKVAQRLSEALTETLSEIN 274
>gi|213408869|ref|XP_002175205.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
gi|212003252|gb|EEB08912.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
Length = 274
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 7/257 (2%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++++ L + +R DGR E+R + DGS V+ G++ + + ++ +P
Sbjct: 21 QYLQHFLDNQVRPDGRTVSEFRPRVVNTQCISTADGSCIVRAGESVFVCGIKAEIAEPEL 80
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+ G + E P+ + F+ G P E A + +++ L ++ V ESLC+ K
Sbjct: 81 EAPSRGWIVPNVEMGPLCNGKFKPGPPRELAQVVSEQMNQVLEQTCLVPLESLCIREKKA 140
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
W + D+ L+ GN D A A + +L T R P +++ V VH + PL L
Sbjct: 141 AWCLYADIVCLNYDGNAFDCAWKALMHALETTRLPAVVWDEDEERVVCVHDERAKHPLAL 200
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
H +F + + ++ DPT EE++ V ++T L+ G +C + K GG + +
Sbjct: 201 SSH----IESFSWTVFGNCVLADPTDDEESLCVERLTIMLDNAGRICKLVKMGGTHIQKG 256
Query: 254 VIMQCLRLASRMASDIT 270
++ CL++A +T
Sbjct: 257 LLKGCLQIAKEHVLSLT 273
>gi|356568754|ref|XP_003552575.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 301
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 133/259 (51%), Gaps = 18/259 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L+ IR DGR + R+ SI G +GS+ V++G T ++ + +++ P
Sbjct: 26 RYFERHLAESIRADGRPLGKARETSIFLGAVAFANGSALVKIGSTTMLTAIKMEIMTPSL 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG L+I P+ P GRP+E++ + + + + SR D + L +++GK
Sbjct: 86 ESPDEGCLAIDFHMPPICSPIVRPGRPAEASPMVSKQLSNTISSSRMTDLKELSLVSGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV----------H 183
W +D++ LD G L DAA ++A+A+L + P S+ DD ++++
Sbjct: 146 AWMAYLDIYCLDADGALFDAALLSAIAALSHLQIP--SIAMNDDGKIVLVSDEDGQKRAQ 203
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P +E L + +P ++T ++ ++ DPT EE++M +T L+ +G + ++
Sbjct: 204 EPVNKEKRKLTLRSIPFSLTCIL--HKNYILADPTAEEESIMETHVTVVLDTSGQLISLY 261
Query: 244 KPGGEGV-LQSVIMQCLRL 261
KPGG + S I C L
Sbjct: 262 KPGGPVLAYTSAIQDCAAL 280
>gi|260834769|ref|XP_002612382.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
gi|229297759|gb|EEN68391.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
Length = 291
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 127/271 (46%), Gaps = 12/271 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
E+ FI + +R DGR +YR + ++ GS+ ++LG T I+ V ++ +P
Sbjct: 12 ERLFIVHGVQDDLRSDGRACEDYRHVQVETDVVSNTSGSARLRLGNTDILVGVKAEMGEP 71
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
RP EG L F + S A P FE E A+E+ + R +D +LC++
Sbjct: 72 DPGRPKEGKLEFFVDCSANASPEFEGRGGEELAIEVSNALQRIFNSKSTLDLTALCIIPE 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVHPPEE 187
W + +D+ +L+ GGNL DA ++A A+L R P + +D ++E+ P +
Sbjct: 132 GQCWVLFVDVLVLECGGNLFDAVSLAVKAALFNTRIPTVVVTADDEGQQEIELSDDPYDV 191
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ L + ++P+ VT V+D + EE + ++T + G + + K G
Sbjct: 192 KR---LDVDNVPLIVTLSKIGHRH--VVDASWEEELCSLARLTVGVTQKGTIAGLNKEGS 246
Query: 248 EGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
+ I + + ++ + ++K+A+E
Sbjct: 247 GSLDPESIYEMIESGKKVGMVLNSRLKEALE 277
>gi|156542409|ref|XP_001601196.1| PREDICTED: exosome complex component RRP42-like [Nasonia
vitripennis]
Length = 291
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 138/286 (48%), Gaps = 12/286 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRED---GSSEVQLGQTHIMGFVTGQ 67
L++ EK FI + + R DGR+ +YR + ++ D GS+ +++G T I+ V +
Sbjct: 6 LSLAEKTFILHGVDANFRNDGRSRTDYRCMELETKLMDQVHGSARLRIGNTDILVGVKVE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ PY D PNEG + F + S A PSFE + A E+ ++ + A++ L
Sbjct: 66 IDTPYPDSPNEGKIEFFVDCSANATPSFEGKGGEDLANEISNVLALAYQSPHAMNLSQLS 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS----LGGEDDLEVIVH 183
+L K W + +D+ IL+ GGNL DA +A A+L + P+ GGE D IV
Sbjct: 126 ILPHKKCWKLYVDILILECGGNLFDAVAVAVKAALYSTEIPKVKGAMLDGGEAD---IVL 182
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
+ E L + P+ VT V+DP+ EE + ++ NG + +I
Sbjct: 183 SDDIYESEKLDTTNCPVLVTLCKIGDNC--VVDPSSEEEMCSSANIVVSVMPNGRISSIV 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKI 289
K G + + + + L++ + + D+ I A+++ + A R+I
Sbjct: 241 KMGYGSLQPATLSKILKMGTSVGIDLNNGILSALKSEDKLGANREI 286
>gi|313221392|emb|CBY32145.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 136/274 (49%), Gaps = 12/274 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
++ E+ FI ++ +R DGR ++R + ++ +GS+ V++G T ++ V +
Sbjct: 9 ISTAERDFIINGVNDNMRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAE 68
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA-VELGRIVDRGLRESRAVDTESL 126
L + + G + + SP A P FE R E E+ + R + +D + L
Sbjct: 69 LEKASLVDGDAGRIEFSVDCSPNATPMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKL 128
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEVIV-H 183
V+ W + +D+ IL+ GGNLVDA++IA A+L R P ++ G ED+ ++ V
Sbjct: 129 TVVPNAWCWVLYVDILILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGDEDEFDIQVSD 188
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + E L + H P+ VT ++DPT EEAV + + ++N NG+ ++
Sbjct: 189 DPLDGEELDI---HPPLTVTVAKLGHR--YIVDPTDEEEAVTLANLIVSVNENGEARGMK 243
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ G + S I++ + +A + A + + + A+
Sbjct: 244 QTGKGSLDPSSILEMISIAKKAAKTLHRSVNRAL 277
>gi|432100894|gb|ELK29247.1| Exosome complex component RRP42 [Myotis davidii]
Length = 298
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR + ++ GS+ V+LG T I+ V ++ P ++PNEG L
Sbjct: 29 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEF 88
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE E E+ + R +VD +SLC+ + W + +D+ +
Sbjct: 89 FVDCSANATPEFEGRGGDELGTEIANTLYRIFSNKSSVDLKSLCISPREHCWVLYVDVLL 148
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA +IA A+L R P + G D+E+ P + + L + ++P
Sbjct: 149 LECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDP---YDCIRLSVENVP 205
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
VT V+D T EEA + + ++ + G V ++K G
Sbjct: 206 CIVTLCKIGYRH--VVDATLQEEACSLASVLVSVTSQGVVTCMRKVG 250
>gi|349603366|gb|AEP99224.1| Exosome complex exonuclease RRP43-like protein, partial [Equus
caballus]
Length = 197
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 5/195 (2%)
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+ P+ F +G P E A + + + S+ + E LC+ GKL W + DL L
Sbjct: 4 VDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLAWVLYCDLICL 63
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GN++DA A LA+L + PE ++ E L + ++ L I P+A +F
Sbjct: 64 DYDGNILDACTFALLAALKNVQLPEVTISEETALAEV----NLKKKSFLNIRTHPVATSF 119
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
F ++LL++DPT EE + G +T ++ G +C + KPGG G+ + + C+ A
Sbjct: 120 AVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVT 178
Query: 265 MASDITKKIKDAVET 279
++ K + + V++
Sbjct: 179 RHKEVKKLMDEVVKS 193
>gi|297285946|ref|XP_002802903.1| PREDICTED: exosome complex exonuclease RRP42-like [Macaca mulatta]
Length = 556
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|313236425|emb|CBY11742.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 136/274 (49%), Gaps = 12/274 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
++ E+ FI ++ +R DGR ++R + ++ +GS+ V++G T ++ V +
Sbjct: 9 ISTAERDFIINGVNDNMRTDGRTCNDFRVIEMETSCIETTNGSARVRIGSTELLVGVKAE 68
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA-VELGRIVDRGLRESRAVDTESL 126
L + + G + + SP A P FE R E E+ + R + +D + L
Sbjct: 69 LEKASLVDGDAGRIEFSVDCSPNATPMFEGRRGGEDIEAEIASLFSRFYKAEEFMDRKKL 128
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEVIV-H 183
V+ W + +D+ IL+ GGNLVDA++IA A+L R P ++ G ED+ ++ V
Sbjct: 129 TVVPNAWCWVLYVDILILEVGGNLVDASSIAVKAALRDTRLPLLNIEKGDEDEYDIQVSD 188
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + E L + H P+ VT ++DPT EEAV + + ++N NG+ ++
Sbjct: 189 DPLDGEELDI---HPPLTVTVAKLGHR--YIVDPTDEEEAVTLANLIVSVNENGEARGMK 243
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ G + S I++ + +A + A + + + A+
Sbjct: 244 QTGKGSLDPSSILEMISIAKKAAKTLHRSVNRAL 277
>gi|349602645|gb|AEP98722.1| Exosome complex exonuclease RRP42-like protein, partial [Equus
caballus]
Length = 283
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 12/239 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V ++ P
Sbjct: 2 EKVYIVHGVQEDLRVDGRGCEDYRCVDVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP 61
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
++PNEG L F + S A P FE + E+ + R +VD +SLC+
Sbjct: 62 KLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANALYRIFNNKSSVDLKSLCISPR 121
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEE 187
+ W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+ P
Sbjct: 122 EHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDP--- 178
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ + L + ++P VT V+D T EEA + ++ + G V ++K G
Sbjct: 179 YDCIRLSVENVPCIVTLRKIGYRH--VVDATLQEEACPWASLLVSVTSKGVVTCMRKVG 235
>gi|444512849|gb|ELV10190.1| Exosome complex component RRP42 [Tupaia chinensis]
Length = 308
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 12/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR + ++ GS+ V+LG T I+ V ++ P ++P+EG L
Sbjct: 39 LRVDGRGCEDYRSVEVETDVVSNTSGSARVKLGHTDILVGVKAEMSTPKLEKPSEGYLEF 98
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE + E+ + R +VD SLC+ + WA+ +D+ +
Sbjct: 99 FVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWALYVDVLL 158
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA +IA A+L R P + G D+E+ P + + L + ++P
Sbjct: 159 LECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDP---YDCIRLSVENVP 215
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
VT V+D T EEA + + + + G V ++K G
Sbjct: 216 CIVTLCKIGCRH--VVDATLQEEACSLASLLLAVTSKGVVTCVRKVG 260
>gi|403268453|ref|XP_003926289.1| PREDICTED: exosome complex component RRP42 [Saimiri boliviensis
boliviensis]
Length = 291
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIMHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPDFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCLR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|440905791|gb|ELR56125.1| Exosome complex exonuclease RRP42, partial [Bos grunniens mutus]
Length = 273
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR + ++ GS+ V+LG T I+ V ++ P ++PNEG L
Sbjct: 4 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEF 63
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE + E+ + R ++D +SLC+ + W + +D+ +
Sbjct: 64 FVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLCISPREHCWVLYVDVLL 123
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA ++A A+L R P + G D+E+ P + + L + ++P
Sbjct: 124 LECGGNLFDAISVAVKAALFNTRIPRVRVLEDEEGSKDIELSDDP---YDCIQLSVENVP 180
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
VT V+D T EEA + + ++ + G V I+K G
Sbjct: 181 CIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCIRKVG 225
>gi|356461011|ref|NP_001239083.1| exosome component 7 [Gallus gallus]
Length = 291
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 6/236 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR ++ GS+ V+LG T I+ V ++ P
Sbjct: 10 EKLYIIHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
++P+EG L F + S A P FE E E+ + R +VD +SLC+ G
Sbjct: 70 KLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIASTLYRIFSSEGSVDLKSLCINPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPPEEREP 190
+ W + +D+ +L+ GGNL DA +IA A+L R P+ L E+ + I + +
Sbjct: 130 EHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPKVRVLEDEEGSKEIELSDDPYDC 189
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ L + +P VT V+D T EEA + + + + G + ++K G
Sbjct: 190 IRLNVEDVPCIVTLNKIGYRH--VVDATLQEEACSLASLLIAITSKGALTCMKKIG 243
>gi|344276339|ref|XP_003409966.1| PREDICTED: exosome complex component RRP42-like [Loxodonta
africana]
Length = 457
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR+ +YR + ++ GS+ V+LG T I+ V +
Sbjct: 172 LSEAEKVYIVHGVQEDLRVDGRSCEDYRCMEVETDVVSNTSGSARVKLGHTDILVGVKAE 231
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + +VD SLC
Sbjct: 232 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGAEIANTLYGIFNNKSSVDLRSLC 291
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P+ + G D+E+
Sbjct: 292 ISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPKVRVLEDEEGSKDIELFDD 351
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 352 P---YDCIRLSVDNVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSMGVVTCMR 406
Query: 244 KPG 246
K G
Sbjct: 407 KVG 409
>gi|317574781|ref|NP_001188120.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
gi|308322915|gb|ADO28595.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
Length = 291
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 12/247 (4%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFV 64
T +++ EK +I + R+DGR +YR + I+ DGS++V LGQT I+ +
Sbjct: 3 TIQVSEAEKVYIMHGVRDDSRVDGRGCEDYRHMEIETDVVSNTDGSAKVSLGQTDILVGI 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ +P P+EG L F + S A P FE E VEL + + ++D
Sbjct: 63 KAEIGRPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNNLYKVFNNRHSLDLR 122
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEV 180
SLC+ G+ W + +D+ +L GNL DA +IA A+L R P + G ++E+
Sbjct: 123 SLCIRPGENCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPNVHISEDEEGGKEIEL 182
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
P + + L + ++P VT V+D T E++ V + ++ G V
Sbjct: 183 SDDP---YDCMRLNVENVPCIVTLCKIGHRH--VVDATLQEKSCSVASLLISVTHKGTVT 237
Query: 241 AIQKPGG 247
++K GG
Sbjct: 238 CVRKLGG 244
>gi|301754007|ref|XP_002912799.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
RRP42-like [Ailuropoda melanoleuca]
Length = 459
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 117/243 (48%), Gaps = 13/243 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +S +VD +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNKS-SVDLKSLC 124
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL D IA A+L R P + G D+E+
Sbjct: 125 ISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 184
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 185 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSTGVVTCMR 239
Query: 244 KPG 246
K G
Sbjct: 240 KVG 242
>gi|213512498|ref|NP_001134892.1| Exosome complex exonuclease RRP42 [Salmo salar]
gi|209736940|gb|ACI69339.1| Exosome complex exonuclease RRP42 [Salmo salar]
Length = 291
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 12/247 (4%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFV 64
T +++ EK +I + +R+DGR +YR + I+ DGS++V LG T ++ V
Sbjct: 3 TVQVSEAEKVYILHGVRDDLRVDGRGCEDYRHMEIETEMVSNTDGSAKVTLGHTDVLVGV 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ +P P EG L F + S A P FE E +EL + + +VD +
Sbjct: 63 KAEMGKPRPMVPGEGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVDLK 122
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEV 180
SLC+ G+ W + +D+ +L GNL DA ++A A+L + P+ + G ++E+
Sbjct: 123 SLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEIEL 182
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
P + + L + ++P VT V+D T E+A V + ++ G V
Sbjct: 183 SDDP---YDCMRLNVENVPCIVTLCKVGHRH--VVDATLQEKACSVASLIISVTRKGTVT 237
Query: 241 AIQKPGG 247
++K GG
Sbjct: 238 CVRKVGG 244
>gi|348680463|gb|EGZ20279.1| hypothetical protein PHYSODRAFT_491455 [Phytophthora sojae]
Length = 295
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 14/246 (5%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQL--GQTHIMGFV 64
+++ +EK++I +++ +R DGR+ YR LS++ + +GS+ L T ++ V
Sbjct: 3 KVSASEKKYIAEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASV 62
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE 124
++ P + P+ G + + P E VEL +++ R L + +
Sbjct: 63 KLEVAPPLPEAPSAGIVQVAVSCCPSVSAKLYGRAVEELNVELSQLMTRLLCSCPSAELG 122
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL---GGEDD-LEV 180
C++ G+ VWAI ID+ + ++ GNL D ++A A+L P L GED +EV
Sbjct: 123 KYCIIPGESVWAISIDVMVFESSGNLPDVISMAIYAALNDTVFPSVRLVGVEGEDKTIEV 182
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
P R + H PI VT + DP EE +M+ +N G VC
Sbjct: 183 DTDPAAGR---LMTAQHWPICVTLSKIG--DYFITDPLQEEELCTTAQMSVAVNPEGSVC 237
Query: 241 AIQKPG 246
+QK G
Sbjct: 238 GVQKSG 243
>gi|402860382|ref|XP_003894609.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|402860384|ref|XP_003894610.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|355559716|gb|EHH16444.1| hypothetical protein EGK_11725 [Macaca mulatta]
gi|355746753|gb|EHH51367.1| hypothetical protein EGM_10727 [Macaca fascicularis]
gi|380786223|gb|AFE64987.1| exosome complex component RRP42 [Macaca mulatta]
gi|384943954|gb|AFI35582.1| exosome complex component RRP42 [Macaca mulatta]
Length = 291
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|73985825|ref|XP_533858.2| PREDICTED: exosome complex component RRP42 isoform 1 [Canis lupus
familiaris]
Length = 291
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R ++D +SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSIDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL D IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCFRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|62955139|ref|NP_001017585.1| exosome complex exonuclease RRP42 [Danio rerio]
gi|62531183|gb|AAH92997.1| Zgc:110717 [Danio rerio]
Length = 291
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 12/240 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR + I+ DGS+++ LG T ++ + ++ +P
Sbjct: 10 EKVYIMHGVRDDLRLDGRGCEDYRHMEIETDVVSNTDGSAKISLGHTDVLVGIKAEIGKP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P+EG L F + S A P FE E VEL + + ++D SLC+ G
Sbjct: 70 RPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG----GEDDLEVIVHPPEE 187
+ W + +D+ +L GNL DA +IA A+L R P+ + G ++E+ P
Sbjct: 130 ENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDP--- 186
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ + L + ++P VT V+D T E+A V + + G V ++K GG
Sbjct: 187 FDCMRLNVENVPCIVTLCKIGHRH--VVDATLQEKACSVASLLIAVTHTGMVTCVRKMGG 244
>gi|393216212|gb|EJD01703.1| hypothetical protein FOMMEDRAFT_88508 [Fomitiporia mediterranea
MF3/22]
Length = 294
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 11/269 (4%)
Query: 1 MDTRL-ANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLG 56
+DT L A T+R ++ + ++E L+ G R DGR ++R +S+ G DGSS V+LG
Sbjct: 20 VDTELQAETFR-RLHPRTYLERFLNEGFRPDGREVADFRDVSVNVGSISTADGSSLVRLG 78
Query: 57 QTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLR 116
T I+ V ++ +P D P G + + + P F+ G P++ A L + L
Sbjct: 79 DTTIVCGVKAEIAEPELDSPELGFIVPNLDLPAICSPKFKPGPPADEAQVLSERLYDALI 138
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176
S V SLC+ K VW + +D ++ GN+ DAA +A +A+L R P+ + E
Sbjct: 139 SSETVSLPSLCIHPRKAVWVLYVDATCINFDGNVFDAALLAMIAALKNTRLPKATFDEET 198
Query: 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
+E L I P+A++FG F S +L DP+ EE ++ T ++
Sbjct: 199 GRTTC----SRKEKTALQILRTPLAISFGIFDSTHILA-DPSSFEEPLLNTSYTVIIDEK 253
Query: 237 GDVCAIQKPGGE-GVLQSVIMQCLRLASR 264
++ ++Q+ G +Q ++ C+ A +
Sbjct: 254 DELVSVQQAGASTSSVQDSMLNCIAAARK 282
>gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 130/254 (51%), Gaps = 11/254 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
+++ L +R DGR+ E R L + D S+ ++LG T ++ +T + ++P
Sbjct: 20 LKSFLQRDVRPDGRSLDELRPLVLAKNVAPTADSSAMIRLGNTKVICGITAETIKPAAAT 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P +G+ S+ EFS + P+ + G P+E A + +D L++ T LC+ L W
Sbjct: 80 PKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGILKQ--VFQTNQLCIEPDLLAW 137
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ ID++ L++ GN+ DAA ++ ++SL + PE ++ E+ + +V+ ++ P+ +
Sbjct: 138 TLFIDVYCLEDDGNVTDAAMMSVISSLRDLKLPEITI-DEETAKPLVNLEKQS---PVDL 193
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
P++ T+G FS +L++DPT E + +T + G + + GG + Q +
Sbjct: 194 KMFPVSTTYGEFS--GILLLDPTARETELGSSPITVVCSEKGALLCFNRSGGSPLSQEQV 251
Query: 256 MQCLRLASRMASDI 269
+ + R +S I
Sbjct: 252 AAAIENSKRRSSTI 265
>gi|413950668|gb|AFW83317.1| hypothetical protein ZEAMMB73_288862 [Zea mays]
Length = 720
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 60/84 (71%)
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
I + E V+DPT+ EEAVM G+MTA +N+NGDVCAIQK GGEG++ SV MQCL
Sbjct: 420 IIRALNMYKREIEQVLDPTYKEEAVMAGRMTAIVNSNGDVCAIQKAGGEGLMSSVTMQCL 479
Query: 260 RLASRMASDITKKIKDAVETYNTE 283
R+AS A+DIT KIK A+ T + E
Sbjct: 480 RIASVKAADITSKIKKAILTGHKE 503
>gi|431905092|gb|ELK10147.1| Exosome complex exonuclease RRP42 [Pteropus alecto]
Length = 311
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 12/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR + ++ GS+ V+LG T I+ V ++ P D+PNEG L
Sbjct: 42 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGAPRLDKPNEGYLEF 101
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE + E+ + R +VD +SLC+ + W + +D+ +
Sbjct: 102 FVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLCISPREHCWILYVDVLL 161
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA +IA A+L R P + G D+E+ P + + L + ++P
Sbjct: 162 LECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDP---YDCIRLSVENVP 218
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
VT V+D T EEA + + ++ + G V +K G
Sbjct: 219 CIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCTRKVG 263
>gi|19113177|ref|NP_596385.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1723274|sp|Q10205.1|RRP43_SCHPO RecName: Full=Exosome complex component rrp43; AltName:
Full=Ribosomal RNA-processing protein 43
gi|3451295|emb|CAA20427.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe]
Length = 270
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 127/253 (50%), Gaps = 9/253 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLV 69
+ ++++ L+ +R DGR+ E+R++ I +GS+ ++ G+ + + ++
Sbjct: 20 ITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIA 79
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P+ + PNEG + E SP+ F+ G PS+ A + + + + L++S ++ +SLC+
Sbjct: 80 EPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIF 139
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
K W + D+ L+ G+ D A A A+L T + P + ++DLE ++
Sbjct: 140 EKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLP--TAVWDEDLERVICASTLTR 197
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
P+ L +F + + L+ DPT EE + +T LN++ ++ I K GG
Sbjct: 198 PVQLSTE----VRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLGGTH 253
Query: 250 VLQSVIMQCLRLA 262
+ ++ +C+ +A
Sbjct: 254 IQPLLLKKCIEVA 266
>gi|156363855|ref|XP_001626255.1| predicted protein [Nematostella vectensis]
gi|156213125|gb|EDO34155.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 9/216 (4%)
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
+ F + +P D PN+G + + P+ PSF G PSE A L +D L R+
Sbjct: 12 LCFFKKEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFID-NLITKRS 70
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
++ L A LVW + IDL LD GN+ DAA IA LA+L R ++ E +
Sbjct: 71 ME---LLQHAKYLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPE 127
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
E + + L + +P+AVTFG F + + DPT EE + GK++ + N V
Sbjct: 128 P----SENKDIHLKLKSMPVAVTFGIFDDDHIYC-DPTDEEERLASGKVSVVMTTNNKVV 182
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDA 276
A+ KPGG + Q + +C + + ++ + I A
Sbjct: 183 AVHKPGGPPLTQDKLQECFDVTTGRVLEVQQLIHTA 218
>gi|449270963|gb|EMC81600.1| Exosome complex exonuclease RRP42, partial [Columba livia]
Length = 257
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKLYIVHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++P+EG L F + S A P FE E E+ + R +VD +SLC
Sbjct: 66 MGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIANTLYRVFSSESSVDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W I +D+ +L+ GGNL DA +IA A+L R P+ + G ++E+
Sbjct: 126 INPREHCWVIYVDVLLLECGGNLFDAISIAVKAALFNTRIPKVHILEDEEGSKEIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + +P VT V+D T EEA + + ++ + G + +++
Sbjct: 186 P---YDCIRLNVDDVPCIVTLSKIGYRH--VVDATLQEEACSLASLLISVTSKGALTSMK 240
Query: 244 KPG 246
K G
Sbjct: 241 KMG 243
>gi|392590636|gb|EIW79965.1| hypothetical protein CONPUDRAFT_166613 [Coniophora puteana
RWD-64-598 SS2]
Length = 289
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 8/237 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ + ++E +S +R DGR ++R++S+ G GS+ V++G T I+ V ++
Sbjct: 27 LHPRSYLERYISEDVRPDGRGFEDWREVSVNVGSISTAHGSALVRMGDTRIVCGVKAEIA 86
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P D+P+EG L + + P F+ G P+E A L ++ L S + ESL +
Sbjct: 87 EPELDKPHEGFLVPNLDLPALCSPKFKPGPPAEEAQILSERLNEALVASGILPLESLAIH 146
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK VW I ID L+ GN DAA +A +A+L R P + + + +E
Sbjct: 147 PGKAVWTIYIDAICLNFDGNAFDAALLAMVAALYNTRLPVATFDEDTGHTTCLR----KE 202
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+PL + PI+ +FG S +L DPT EE +M ++ +N GD+ A+ + G
Sbjct: 203 TVPLELTCKPISTSFGMLDSLQVLS-DPTSFEEPLMDTTVSVVVNEKGDLLAVNELG 258
>gi|387915924|gb|AFK11571.1| exosome complex component RRP42-like protein [Callorhinchus milii]
Length = 291
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 128/273 (46%), Gaps = 8/273 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK ++ + +RIDGR +YR + I+ GS+ V++G T ++ V +
Sbjct: 6 LSEAEKVYVMHGVQDDLRIDGRGCEDYRYIEIETDVVSNTSGSARVKIGHTGVLVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESL 126
+ P +RP EG L F + S A P FE GR E E+ + R ++D +L
Sbjct: 66 MGAPKLERPKEGFLEFFVDCSANATPEFE-GRGGEDLGTEIANTLYRVFDNGSSLDLTAL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPP 185
C+ + W + +D+ +L+ GGNL DA +IA A+L R P+ L E+ + I
Sbjct: 125 CITPREHCWILFVDVLLLECGGNLFDAISIAVKAALHNTRIPKVRVLEDEEGSKEIELSD 184
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+ + + L + +P +T V+D T EEA + + ++ G + +K
Sbjct: 185 DPYDCIRLNVESVPCIITLSKIGYRH--VVDATSQEEACCMASLLVSVTGKGTITCFRKI 242
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
GG + + I + L R+ + + ++ +E
Sbjct: 243 GGGSLDPASIFEMLETGKRVGNALHVSLQTTLE 275
>gi|307176033|gb|EFN65792.1| Exosome complex exonuclease RRP42 [Camponotus floridanus]
Length = 426
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 122/260 (46%), Gaps = 13/260 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQ-THIMGFVTGQLVQPYRDRPNEGTLS 82
+R DGR+ +YR + I+ GS+ +++G T ++ V ++ PY ++P+EG L
Sbjct: 156 LRNDGRSRCQYRSIEIETRLMPHAHGSARLRIGNITDVLVGVKLEIDTPYAEKPDEGKLD 215
Query: 83 IFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLH 142
F + S A P+FE + A E+ ++ + D LC++ K W + +D+
Sbjct: 216 FFVDCSANATPAFEGKGGDDLATEISNVLSMAYQTPDVFDLRQLCIIPHKKCWKMYVDIL 275
Query: 143 ILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHL 198
IL GGNL DA A A+L P+ GGE D++V P + + L I
Sbjct: 276 ILQCGGNLFDAVGAAVKAALYNTEIPKVIAATLDGGEPDIQVSDDP---YDCIKLDITTY 332
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
P VT VIDPT EE+ + ++ NG V ++ K G +L + +++
Sbjct: 333 PSIVTVCKIGDN--FVIDPTLEEESCSAVNIIMSVMPNGKVTSMVKQGYGSLLPTTLIKM 390
Query: 259 LRLASRMASDITKKIKDAVE 278
L + + + + +K +E
Sbjct: 391 LEVGKDIGLKLNEALKKTLE 410
>gi|345321857|ref|XP_003430500.1| PREDICTED: exosome complex component RRP42-like [Ornithorhynchus
anatinus]
Length = 276
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 12/226 (5%)
Query: 28 RIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R+DGR+ +YR ++ GS+ V+LG T I+ V ++ P ++P EG L F
Sbjct: 8 RVDGRSCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPKEGFLEFF 67
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+ S A P FE E E+ + R ++D ESLC+ + W + +D+ +L
Sbjct: 68 VDCSANAAPEFEGRGGDELGTEIANTLYRIFNNKSSIDLESLCISPREHCWVLYVDVLLL 127
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLPI 200
+ GGNL DA +IA A+L R P + G D+E+ P + + L + ++P
Sbjct: 128 ECGGNLFDAISIAVKAALFNTRIPRVQVLEDEEGSKDIELSDDP---YDCIRLNVENVPC 184
Query: 201 AVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
VT V+D T EEA + ++ ++ G + ++K G
Sbjct: 185 IVTLSKIGYRH--VVDATLQEEACSLARLLVSVTNKGILTCMRKVG 228
>gi|356553448|ref|XP_003545068.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Glycine max]
Length = 273
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 18/263 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L++ EK FI+ + +R DGR F Y+ +S++ + +GS+ V++G T ++
Sbjct: 4 LSLGEKHFIQGGIGQDLRCDGRKRFTYKPISVETEVIPQTNGSARVRMGATDVIASAKAV 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++ +SI+ + S A+P+FE E A EL + R L ++ +
Sbjct: 64 LGKPSLLQPDKXKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQRCLLGGKSGAGARIG 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDA----ANIAALASLLTFRRPECSLGGEDDL 178
SL V+ GK+ W + ID ++++ GNL+DA + I A S R + + G +D
Sbjct: 124 LSSLIVVEGKICWDLYIDGLLVNSDGNLLDALIEXSTIKAALSNTGIPRVQVAAGTSNDE 183
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLL----VIDPTHHEEAVMVGKMTATLN 234
+ V E E L +P+ VT + L ++D T EE+ + ++N
Sbjct: 184 QPEVDVSNE-EFLQFDTSGVPVIVTLAKVTCMLGLGRHYIVDATSEEES-QISSAVXSVN 241
Query: 235 ANGDVCAIQKPGGEGVLQSVIMQ 257
G +C I K GG G+ S I+Q
Sbjct: 242 RQGHICGITKRGGVGLDPSTILQ 264
>gi|354486487|ref|XP_003505412.1| PREDICTED: exosome complex component RRP42-like [Cricetulus
griseus]
Length = 274
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 12/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR + ++ GS+ V+LG T I+ V ++ P ++P+EG L
Sbjct: 5 LRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPSEGYLEF 64
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE + E+ + R +VD SLC+ + W + +D+ +
Sbjct: 65 FVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLSSLCISPREHCWVLCVDVLL 124
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA +IA A+L R P + G D+E+ P + + L + ++P
Sbjct: 125 LECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDP---YDCIRLSVENVP 181
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
VT V+D T EEA + + ++ + G V ++K G
Sbjct: 182 CIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMRKVG 226
>gi|113197990|gb|AAI21334.1| hypothetical LOC496941 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 132/285 (46%), Gaps = 15/285 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK ++ + +R DGR +YR + ++ GS+ V++G T ++ V +
Sbjct: 6 LSEAEKIYVLHGVQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P +RP EG L F + S A P FE E E+ ++ + ++D ESLC
Sbjct: 66 MGTPKLERPGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVH 183
+ + W + +D+ +L+ GGNL D ++A A+L R P+ + +D D E+
Sbjct: 126 IQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA V + + + G + ++
Sbjct: 186 P---YDCVRLNVVNVPCIVTLSRIGHRH--VVDATLQEEACSVASLLIAVTSKGILTCMR 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
K G + I + + R+A + ++ A+ N E +L K
Sbjct: 241 KIGKGSLDPESIFEMIETGKRVAKSLHTSLQSAL---NQEESLGK 282
>gi|312371957|gb|EFR20014.1| hypothetical protein AND_20780 [Anopheles darlingi]
Length = 407
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 14/216 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + R DGR+ +YR + ++ GS+ ++L T I+ V ++ P
Sbjct: 118 EKTYILHGIQKNYRNDGRSNRDYRPMELELDIVVHASGSARLRLANTDILVGVKAEIDTP 177
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVLA 130
+ DRPNEG + F + S A P FE GR E A E+ + + D SLC+LA
Sbjct: 178 HPDRPNEGKIDFFIDCSANAAPEFE-GRGGEQLAEEISNTLAKAYESQHGFDLSSLCILA 236
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPE 186
W + +D+ +L+ GGNL DA ++A +L R P S GG DL ++ P
Sbjct: 237 NHQCWKLYVDVLVLECGGNLFDAISLAVKGALYNTRVPRVSTAMLDGGSMDL-ILTDDPF 295
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEE 222
+ E L + +P+ VT + V+DP+ EE
Sbjct: 296 DCERLK--VDTVPLLVTVCKIGEQC--VVDPSAEEE 327
>gi|326922105|ref|XP_003207292.1| PREDICTED: exosome complex exonuclease RRP42-like [Meleagris
gallopavo]
Length = 291
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 6/236 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + +R+DGR +YR ++ GS+ V+LG T I+ V ++ P
Sbjct: 10 EKLYIIHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
++P+EG L F + S A P FE E E+ + R ++D +SLC+
Sbjct: 70 KLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIASTLYRIFSSEGSIDLKSLCINPR 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPPEEREP 190
+ W + +D+ +L+ GGNL DA +IA A+L R P+ L E+ + I + +
Sbjct: 130 EHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPKVRVLEDEEGSKEIELSDDPYDC 189
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ L + +P VT V+D T EEA + + + + G + ++K G
Sbjct: 190 IRLNVDDVPCIVTLNKIGYRH--VVDATLQEEACCLASLLIAITSKGALTCMKKIG 243
>gi|291393541|ref|XP_002713440.1| PREDICTED: exosome component 7 [Oryctolagus cuniculus]
Length = 290
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 17/245 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRP-----SESAVELGRIVDRGLRESRAVD 122
+ P ++P+EG + F + S A P FE GR +E A L RI ++G ++D
Sbjct: 66 MGTPKLEKPDEGYVEFFVDCSANATPEFE-GRGGDDLGTEIANTLARIFNKG-----SLD 119
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS-LGGEDDLEVI 181
+SLC+ + W + +D+ +L+ GGNL DA +IA A+L R P L E+ + I
Sbjct: 120 LKSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVHVLEDEEGSKEI 179
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
+ + + L + ++P +T V+D T EEA + + ++ G V
Sbjct: 180 ELSDDPYDCIQLSVENVPCIITLCKIGYRH--VVDATLQEEACSLASLLVSVTNKGVVTC 237
Query: 242 IQKPG 246
++K G
Sbjct: 238 MRKVG 242
>gi|256079799|ref|XP_002576172.1| exonuclease rrp45 [Schistosoma mansoni]
Length = 446
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 136/260 (52%), Gaps = 11/260 (4%)
Query: 49 GSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFS--PMADPSFETGRPSESAVE 106
G V++G T +M V+ ++++P RP++G L + + S ++ + + +
Sbjct: 20 GCCVVKIGATTVMAQVSVEVIEPKHFRPSQGMLFVHFDASILKLSKTLYRKQKRDDEGRR 79
Query: 107 LGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFR 166
L ++ LR+S +D ++LC++A + V+A+R++L L GNL D +AA+A+L FR
Sbjct: 80 LSAVLQTLLRDS--IDLDALCIVAWERVFAVRVELRALSYDGNLGDCGTLAAVAALAAFR 137
Query: 167 RPECSLGGEDDL-EVIVHPPEEREP-LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
RP+ + DD+ +V+V + P +PL I P+ VT G + ++++DPT EE +
Sbjct: 138 RPDVYV---DDMGKVLVDFEAKFRPRVPLGIRRTPVLVTLGLTADAKVVLVDPTAREELI 194
Query: 225 MV-GKMTATLNANGDVCAIQKPGGEGVLQ-SVIMQCLRLASRMASDITKKIKDAVETYNT 282
+ G++ L ++C + G +Q S + +C+ LA+ A + I A+E +
Sbjct: 195 LTGGRVLLGLTNTSEICCLYTTGLSVPIQCSSLSRCIHLANSKAKSLVSLINWALEGLSI 254
Query: 283 ERALRKIKRHPTSITLDGSV 302
+R H S L+ SV
Sbjct: 255 QREANLAAAHARSSELNNSV 274
>gi|355686807|gb|AER98193.1| exosome component 7 [Mustela putorius furo]
Length = 291
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++P+EG L F + S A P FE + E+ + R +VD +SLC
Sbjct: 66 MGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GNL D IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWILYVDVLLLECDGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSTGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>gi|148236233|ref|NP_001086766.1| exosome component 7 [Xenopus laevis]
gi|50418038|gb|AAH77415.1| Exosc7-prov protein [Xenopus laevis]
Length = 291
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK ++ + +R DGR +YR + ++ GS+ V++G T ++ V +
Sbjct: 6 LSEAEKVYVLHGVQDDLRTDGRGCEDYRCIEVESDVVSNTTGSARVKIGHTDVLVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P +RP EG L F + S A P FE E E+ ++ + ++D ESLC
Sbjct: 66 MGTPKLERPGEGYLEFFVDCSANAAPEFEGRGGEELGTEIAFMLYKIFDNRSSIDLESLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ A + W + +D+ +L+ GGNL D ++A A+L R P+ + G D E+
Sbjct: 126 IQAREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPKVRVLEDEEGGKDFELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA V + ++ + G + ++
Sbjct: 186 P---YDCVRLNVVNVPCIVTLSRIGHRH--VVDATLQEEACSVASLLISVTSKGILTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KIG 243
>gi|15218985|ref|NP_176216.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
gi|4249388|gb|AAD14485.1| Similar to gb|AF025438 Opa-interacting protein (OIP2) from Homo
sapiens [Arabidopsis thaliana]
gi|28416659|gb|AAO42860.1| At1g60080 [Arabidopsis thaliana]
gi|110735926|dbj|BAE99938.1| hypothetical protein [Arabidopsis thaliana]
gi|332195536|gb|AEE33657.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
Length = 302
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 137/271 (50%), Gaps = 18/271 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
RF E LS +R DGR + R + G DGS+ ++G T ++ + +++ P
Sbjct: 26 RFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P+EG ++I P+ P+ GRP+E+A + + + + S +D + LC+++GK
Sbjct: 86 DSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG---------GEDDLEVIVHP 184
W +D++ LD G L DAA +AA+A+ + P +L GE D + +
Sbjct: 146 AWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALIT 205
Query: 185 PEE---REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
+E +E L + ++P ++T ++ ++ DPT EE++M +T L+++ + +
Sbjct: 206 EKEAVNKEKRKLTLKNIPFSLT--CILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVS 263
Query: 242 IQKPGGEGV-LQSVIMQCLRLASRMASDITK 271
K GG + S I C+ LA + A ++ +
Sbjct: 264 FYKSGGAALAYSSAIKSCVELARKRAKELKQ 294
>gi|440803698|gb|ELR24581.1| exosome component 7, putative [Acanthamoeba castellanii str. Neff]
Length = 263
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 134/271 (49%), Gaps = 33/271 (12%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ E++F+ + +R DGR+ ++R +I+ G +GS+ ++L T +M V
Sbjct: 4 LSSAERQFLIDGVELNVRNDGRSRLDFRHFTIETGIIATANGSARLKLDNTDVMVGVRVD 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
L +P DRPNEG + A+ + +++ R + A+D SLC
Sbjct: 64 LAEPKLDRPNEGA--------------------EDLAISITQVLARSYKN--ALDWTSLC 101
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPE 186
V+ GKLVWAI +D +LD GN DA +IA A+L P +L ED ++EV P
Sbjct: 102 VIPGKLVWAIYVDALVLDFEGNPYDAISIATRAALHNTMIPRITL--EDGEVEVTDDP-- 157
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
++ L + ++P+ VT + L +D T EE M ++ ++ G VC++Q G
Sbjct: 158 -QDCTRLDVSNVPVTVTLTKIGTRFL--VDATLEEEQCMGVRVIVGISPKGHVCSMQMTG 214
Query: 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
V + + + ++ + ++ ++ + + A+
Sbjct: 215 HGAVEPTSLYEMIQTSQKLGRELIEGLDKAL 245
>gi|157169424|ref|XP_001651510.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
42 [Aedes aegypti]
gi|108878402|gb|EAT42627.1| AAEL005851-PA [Aedes aegypti]
Length = 299
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 129/286 (45%), Gaps = 17/286 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIM 61
+AN L+ EK +I + R DGR +YR + ++ GS+ ++L T I+
Sbjct: 1 MANVL-LSEAEKTYILHGIQKDYRNDGRTNRDYRPMELETDIVVHAMGSARLRLANTDIL 59
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
V + P DRP EG + F + S A P FE E A E+ + + +A
Sbjct: 60 VAVKADIDAPSPDRPKEGKIEFFVDCSANATPDFEGRGGEELATEISNTLSKAYLSQQAF 119
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDD 177
D LC+LA W + +D+ IL+ GGNL DA ++A A+L + + P S GG D
Sbjct: 120 DLSPLCILAKHQCWKLYVDILILECGGNLFDAVSLAVKAALYSTKLPRVSSAELDGGAMD 179
Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPT-HHEEAVMVGKMTATLNAN 236
+ ++ P + E L I P+ VT V+DP+ EE + + N
Sbjct: 180 I-ILSDDPYDCERLN--IQTAPLLVTVCKIG--DYCVVDPSAEEEECSAISVVIGVSRKN 234
Query: 237 GDVCAIQ--KPGGEGVLQS-VIMQCLRLASRMASDITKKIKDAVET 279
G ++ + GEG S +M+ L L A+ + K + A++
Sbjct: 235 GGKSSVTSIRTSGEGSFHSDTLMKSLDLGVSAATYLDKALMAALKV 280
>gi|281343574|gb|EFB19158.1| hypothetical protein PANDA_000598 [Ailuropoda melanoleuca]
Length = 271
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR + ++ GS+ V+LG T I+ V ++ P ++PNEG L
Sbjct: 3 LRVDGRGCEDYRYVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEF 62
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE + E+ + R +S +VD +SLC+ + W + +D+ +
Sbjct: 63 FVDCSANATPEFEGRGGDDLGTEIANTLYRIFNKS-SVDLKSLCISPREHCWILYVDVLL 121
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL D IA A+L R P + G D+E+ P + + L + ++P
Sbjct: 122 LECGGNLFDTICIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDP---YDCIRLSVENVP 178
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
VT V+D T EEA + + ++ + G V ++K G
Sbjct: 179 CIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSTGVVTCMRKVG 223
>gi|326430620|gb|EGD76190.1| hypothetical protein PTSG_00897 [Salpingoeca sp. ATCC 50818]
Length = 304
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 125/260 (48%), Gaps = 26/260 (10%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQP 71
E++FI +++ IR DGR+ + R L ++ G +GSS VQL T ++ V ++ P
Sbjct: 25 ERQFIANGIAANIRCDGRDLLDRRPLELETGNITNANGSSRVQLMGTDVLVGVKVEVATP 84
Query: 72 YRDRPNEGTL--SIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
DRP+EG L SI + + + + + L + ++ + S A+D + LC+L
Sbjct: 85 TDDRPDEGMLEFSISSSSANATVAALDARTADKMTRSLEFLAEQLQKTSHALDLKKLCIL 144
Query: 130 AGKLVWAIRIDLHILDN-GGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI------- 181
GK VW +R+D+ +L + GGN+V+ +A A+L P C+L + + E +
Sbjct: 145 PGKAVWCVRVDVLVLQSLGGNVVECVFLAIKAALHDTTIPNCTLIKDSNGEAVDFDISSN 204
Query: 182 ---VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
V P E + P+ + FG + + DP EE + ++A+G
Sbjct: 205 AYDVSPIEG-------VAEFPVILCFGIIGAR--VFADPLFEEEECADAFVLVGVSASGA 255
Query: 239 VCAIQK-PGGEGVLQSVIMQ 257
VC Q+ G GV + I++
Sbjct: 256 VCLTQQVCAGRGVDPTTIIE 275
>gi|224138050|ref|XP_002322717.1| predicted protein [Populus trichocarpa]
gi|222867347|gb|EEF04478.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 139/294 (47%), Gaps = 35/294 (11%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E LS IR D R R ++ G GS+ ++G T ++ + +++ P
Sbjct: 26 RYFERHLSESIRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPST 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESA----VELGRIVDRGLRESRAVDT------ 123
+ P+EG ++I P+ P GRP+E+A +L + R ++ S ++D+
Sbjct: 86 ESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISRQVKFSASIDSPQRLIL 145
Query: 124 ----------ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG 173
+ L +++GK W +D++ LD G L DAA ++A+A+ + P SL
Sbjct: 146 HAEISGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIPIVSLN 205
Query: 174 GEDDLEVIVHPPE----EREPL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
+ + ++ E E+EP+ L + +P ++T ++ ++ DPT EE++
Sbjct: 206 DDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIPFSLTCIL--HKNYILADPTAEEESI 263
Query: 225 MVGKMTATLNANGDVCAIQKPGGE-GVLQSVIMQCLRLASRMASDITKKIKDAV 277
M +T L+++ + + KPGG S + C+ L + ++ + + +A+
Sbjct: 264 METLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVALTRQRVKELQEILDEAI 317
>gi|325180002|emb|CCA14404.1| exosome complex exonuclease RRP43 putative [Albugo laibachii Nc14]
Length = 293
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 12/279 (4%)
Query: 6 ANTWRLTVNEKRFIE----TALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQT 58
A T+ +V K F+E L + IR D R R + I+ SS V+L T
Sbjct: 11 AVTYDPSVYRKLFVEEYTTKCLENEIRTDARTFDASRSMHIQTNVINSCYSSSLVKLKNT 70
Query: 59 HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES 118
++ + + P D+ EG + I +P+ F GR E A + + + +R +
Sbjct: 71 SVITGIQLAVGTPAIDKQTEGDIVIQIHLTPLCSTRFNVGRACEEANAVSSHISKIIRRA 130
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
R +D L + GK W + ID++ +D GN+ + + ++ + +L R P + E D
Sbjct: 131 RMIDLTQLSIEKGKSAWNVMIDVYCIDYDGNIFEVSLMSIMTALQKLRLPATRV-SEVDH 189
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
+V + EE PLI+ + A +F + L IDPT EE + +
Sbjct: 190 KVEIDSDEESR--PLIMQRVLCATSFAIVNEHVL--IDPTSEEEGLASSTFNIIYTTENE 245
Query: 239 VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
+ + KPGG + +++ +CL A + K++ +++
Sbjct: 246 LFGVYKPGGTLISPAILKKCLDTAKNRTKKVAKQLLESL 284
>gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
Length = 301
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 128/289 (44%), Gaps = 32/289 (11%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+ L+ R DGR R +S+ G DGS+ V++G+T + + P
Sbjct: 14 YYRKFLAEETRPDGRPLARARDVSVANGVVTSADGSALVKIGRTTALAAAKLEPAPPEPT 73
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+ G + + E PM S GRP+E + R ++ LR++ VD LC+ G
Sbjct: 74 APDVGVVEVTVELPPMCAASARPGRPTEESQRCARRIEDVLRDANVVDLRKLCIKRGVYA 133
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP-- 192
W + +D+++LD+ G ++DAA A + +L + P + DD +V ERE P
Sbjct: 134 WRVCVDVYVLDHDGGILDAALCAVVGALKDAKVPRVDV---DDRGKLVWGGGERERRPGD 190
Query: 193 ---------------------LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTA 231
+ + P+++T G + + LV+DP EEA+M ++
Sbjct: 191 ADADADANGDGDASTSAAACVVDVASHPLSLTIGQYDGK--LVVDPNFEEEALMESVVSV 248
Query: 232 TLNANGDVCAIQKPGG-EGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ +GD+ + KPGG +S +++C+ A K DA +
Sbjct: 249 VMREDGDLVCVSKPGGTREASESTLIKCIAAARLRYPGCKKAFDDAFDA 297
>gi|82524833|ref|NP_001032342.1| exosome component 7 [Xenopus (Silurana) tropicalis]
gi|89267936|emb|CAJ82816.1| exosome component 7 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 15/285 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK ++ + +R DGR +YR + ++ GS+ V++G T ++ V +
Sbjct: 6 LSEAEKIYVLHGVQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P +R EG L F + S A P FE E E+ ++ + ++D ESLC
Sbjct: 66 MGTPKLERAGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVH 183
+ + W + +D+ +L+ GGNL D ++A A+L R P+ + +D D E+
Sbjct: 126 IQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA V + + + G + ++
Sbjct: 186 P---YDCVRLNVVNVPCIVTLSRIGHRH--VVDATLQEEACSVASLLIAVTSKGILTCMR 240
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
K G + I + + R+A + ++ A+ N E +L K
Sbjct: 241 KIGKGSLDPESIFEMIETGKRVAKSLHTSLQSAL---NQEESLGK 282
>gi|56758238|gb|AAW27259.1| SJCHGC04772 protein [Schistosoma japonicum]
Length = 277
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 35/299 (11%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQ 57
MDT L L+ E+ ++ + G R+DGR P EYR L I+ GS+ +++G+
Sbjct: 1 MDTVL-----LSDLERFYLIQGIEVGCRMDGRGPSEYRPLEIETNILSHATGSASIRIGE 55
Query: 58 THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
T I+ V ++ +P R NEG + I E P A SE A L + + +
Sbjct: 56 TFIVCCVKMEVGKPSLTRLNEGRIEINVECYPTATYRCNEKGASELAERL-KTTLQSTYQ 114
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG---- 173
S ++ SLC+ G+ W I IDL IL+ GNL+DA+++ A+LL + L
Sbjct: 115 SEFINLNSLCIQRGRQCWVIYIDLLILEGAGNLLDASSLVIKAALLNATQSNSFLSSVFR 174
Query: 174 ---GEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMT 230
D E I + E+ PL + +H + A +ID T EEA + +++
Sbjct: 175 NDTNTSDTE-IQNCNEDMLPLFVTVHKIGNAY-----------IIDATKEEEACSLSRLS 222
Query: 231 ATLNANGDVCAIQKPGGEGV-LQSVIMQCLRLASRMASDITKKIKDA-VETYNTERALR 287
+ +G + ++ G L+S++ S++A+ + K++ A + T E+ LR
Sbjct: 223 LVIYPDGSIGFLEHDGCCSCQLESIVEM-----SQLATTVGKELNHALIRTLELEKQLR 276
>gi|56970613|gb|AAH88546.1| LOC496941 protein, partial [Xenopus (Silurana) tropicalis]
Length = 289
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 15/285 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK ++ + +R DGR +YR + ++ GS+ V++G T ++ V +
Sbjct: 4 LSEAEKIYVLHGVQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P +R EG L F + S A P FE E E+ ++ + ++D ESLC
Sbjct: 64 MGTPKLERAGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSIDLESLC 123
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVH 183
+ + W + +D+ +L+ GGNL D ++A A+L R P+ + +D D E+
Sbjct: 124 IQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDFELSDD 183
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA V + + + G + ++
Sbjct: 184 P---YDCVRLNVVNVPCIVTLSRIGHRH--VVDATLQEEACSVASLLIAVTSKGILTCMR 238
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRK 288
K G + I + + R+A + ++ A+ N E +L K
Sbjct: 239 KIGKGSLDPESIFEMIETGKRVAKSLHTSLQSAL---NQEESLGK 280
>gi|449681001|ref|XP_002158932.2| PREDICTED: exosome complex component RRP43-like [Hydra
magnipapillata]
Length = 276
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 15/270 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
+ + L IR DGR EYRK + GS V++G T ++ + +L +P +
Sbjct: 13 YYKEFLKENIRPDGRALDEYRKTIVNINSIKTASGSGLVRIGNTIVVCGIKAELAEPSVE 72
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
+ NEG + + F G PS+ A + ++V + + ++ + LC+ KL
Sbjct: 73 KTNEGYFVPNVDLPALCSHEFRPGPPSDQAQAMSQLVAETVENCKLINLKKLCIKEKKLC 132
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHP---PEEREPL 191
W I D+ + + GNL+DA + +LL + P ++ E P P E+ L
Sbjct: 133 WVIYADIICISHDGNLIDAIIASLYIALLNTKLPVVTINEETG-----SPEASPTEQFTL 187
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
L V ++ L++DPT+ EE + + +T L ++ ++ KPGG V
Sbjct: 188 ELTTRLSSTTVEL----IDNKLLVDPTYEEEQLSLSSLTIILGDEKNIISMYKPGGCSVN 243
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVETYN 281
+ + C++ A A ++ I +A E +
Sbjct: 244 EDSVRTCIKYAIHRAEELDSLIHEASECID 273
>gi|114052969|ref|NP_001040497.1| exosc7 protein [Bombyx mori]
gi|95103140|gb|ABF51511.1| exosc7 protein [Bombyx mori]
Length = 277
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 14/234 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + R DGR+ +YR + ++ GS+ ++L T I+ + +
Sbjct: 6 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESL 126
+ P D+P+ G + + S A P FE GR E+ A + + R S+A D + L
Sbjct: 66 IDTPKPDKPDMGKIEFLVDGSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIV 182
C++ GK W + +D+ IL+ GGN DA ++A A+L R P GG DL++
Sbjct: 125 CIVEGKQCWKLYVDILILECGGNWFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
P + + L + P+ VT + V+DP+ EE+ V + + N
Sbjct: 185 DPYDFKF---LDVGSAPLLVTLCKIGEKC--VVDPSAEEESCSVISLIVGITGN 233
>gi|225441838|ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
Length = 303
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 138/274 (50%), Gaps = 15/274 (5%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L IR D R R S+ G DGS+ ++G T ++ V +++ P +
Sbjct: 26 RYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAVKMEVMTPPK 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG+++I P+ P GRP+E A + + + + S ++ + L +++GK
Sbjct: 86 ESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILSSGMINLKELSLVSGKA 145
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP----EERE 189
W +D++ LD G+L DAA +AA+A+ R P SL E + V+ E+E
Sbjct: 146 AWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKE 205
Query: 190 PL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
P+ L + LP ++T ++ ++ DPT EE++M +T L+++G + ++ K
Sbjct: 206 PVNKGKRKLTLSSLPFSLTCILH--KNYILADPTAEEESIMETLVTVVLDSSGQLVSLYK 263
Query: 245 PGGEGV-LQSVIMQCLRLASRMASDITKKIKDAV 277
PGG + S + C+ L + ++ + +A+
Sbjct: 264 PGGPVLAYASAVQDCIALTRQRVKELKSILNEAI 297
>gi|426192626|gb|EKV42562.1| hypothetical protein AGABI2DRAFT_195867 [Agaricus bisporus var.
bisporus H97]
Length = 318
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 21/236 (8%)
Query: 13 VNEKRFIETALSSGIRIDGR-----------NPFEYRKLSIKFGR---EDGSSEVQLGQT 58
++ + ++E L+ +R DGR +R +SI G DGS+ V++G +
Sbjct: 23 LHPRVYLERFLTENVRPDGRAIGCVMDGMGVKGEIWRDVSINVGSINTADGSALVRMGGS 82
Query: 59 HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES 118
I+ V ++ +P + P+EG L + M P F+ G PS+ A L + L S
Sbjct: 83 TIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFKPGPPSDEAQVLSERLFETLTSS 142
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
+ +SL V GK VW + +D ++ GN+ DA IA +++LL R P+ ++ ED
Sbjct: 143 NFMSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLIAMVSALLNTRLPK-AVYNEDTG 201
Query: 179 EVIVHPPEEREPL-PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL 233
+ + + RE PL + LP+ +FG F S +L DPT EE ++ G ++
Sbjct: 202 QTMCY----RESTSPLALFGLPLPTSFGIFDSSQVLA-DPTAFEEPLLDGTISIVF 252
>gi|193645775|ref|XP_001952675.1| PREDICTED: exosome complex exonuclease RRP42-like [Acyrthosiphon
pisum]
Length = 289
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKF---GREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + R DGR+ +YR L ++ +GS+ ++L + I+ V ++ P
Sbjct: 10 EKVYIIHGVEENFRCDGRSRQDYRPLELEMDIVSNANGSARLRLANSDILVCVKVEIDTP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVLA 130
+ P +G + F + S A P+FE GR E A EL R + L + LC++
Sbjct: 70 LPEAPKDGKIEYFVDCSANATPAFE-GRGGEHLAAELSRFL--CLAHGPVFNLSKLCIVP 126
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVHP-- 184
G+ W + +D+ IL+ GGNL DA ++AA A+L P ED DL++ P
Sbjct: 127 GQSCWKLFVDVLILECGGNLFDAVSLAAKAALCNTSLPNIVGTYEDGQNIDLQISDDPFD 186
Query: 185 --PEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P E LP+++ I ++ V DPT EE G + ++ G+V A+
Sbjct: 187 TKPLEASDLPVLVSLCKIGNSY---------VADPTIEEEICGAGCIVVSVTPKGNVTAV 237
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
K G + + + + S + + K + + +
Sbjct: 238 LKKGAGSFMPDTLNEIIMSGSHIGILLNKALNETL 272
>gi|403171122|ref|XP_003330351.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169041|gb|EFP85932.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 281
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 5/221 (2%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKL---SIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+FI+T L++ +R DGR + R + S S+ V +G T ++ + + QP
Sbjct: 17 QFIKTCLANKLRTDGRTLHQSRPIHSHSDVISSAHASTIVSIGNTSVLCAIKFETAQPES 76
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+PN+G L E PM P ++ G P + A L + L S V +SL + GKL
Sbjct: 77 AKPNQGFLVPNVELGPMCCPKYKPGPPPDQAQILATKLKDILISSGFVPLDSLVIAPGKL 136
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW + ID+ L N GNL DA+ A ++L + R P S E + + P E +PL
Sbjct: 137 VWVVYIDIVCLSNDGNLFDASLSATTSALKSARIPVVSFDHETQ-SLKLANPTHAECVPL 195
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
I TF + ++L DP EE G +T ++
Sbjct: 196 AIRTSISGYTFALYDRSTILP-DPCLFEEDSAAGSVTLVVD 235
>gi|358255969|dbj|GAA57561.1| exosome complex component RRP42, partial [Clonorchis sinensis]
Length = 200
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 4/160 (2%)
Query: 7 NTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGF 63
+T L+ E+ +I G R DGR EYR L I+ GS+ V++G+TH++G
Sbjct: 2 DTILLSDLERFYIIQGAELGCRTDGRASNEYRPLEIETSILSHASGSASVRIGETHVLGC 61
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
V ++ +P +RP+EG + I E P A + T + + E +I + S A+D
Sbjct: 62 VKMEVGKPLSNRPDEGRIEINVECYPTATYA-STDKGANEIAENLKITLQSAYRSDALDL 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL 163
LC+ +G+ W + IDL +L+ GGN +DAA++A A+L+
Sbjct: 121 RRLCIQSGRQCWVVYIDLLLLEGGGNFLDAASLAIKAALI 160
>gi|334348902|ref|XP_003342119.1| PREDICTED: exosome complex component RRP42-like [Monodelphis
domestica]
Length = 332
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR ++ GS+ V+LG T I+ V ++ P +RPNEG L
Sbjct: 63 LRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPRLERPNEGYLEF 122
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE + E+ + R ++D +LC+ + W + +D+ +
Sbjct: 123 FVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKGSIDLTALCISPREHCWILYVDVLL 182
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA +IA A+L P+ + G D+E+ P + + L + ++P
Sbjct: 183 LECGGNLFDAISIAVKAALFNTSIPKVRVLEDEEGTKDIELSDDP---YDCIRLNVENVP 239
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+T V+D T EEA + + ++ + G + ++K G
Sbjct: 240 CIITLSKIGYRH--VVDATLQEEACSLASLLVSVTSKGVLTCMRKVG 284
>gi|428170337|gb|EKX39263.1| hypothetical protein GUITHDRAFT_76548 [Guillardia theta CCMP2712]
Length = 277
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 14/209 (6%)
Query: 23 LSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L IR+D R+ R +SI F DGS+ V++G+T + + +V P R EG
Sbjct: 3 LQQDIRLDARSFLHARDISINRGCFSSADGSAMVKVGRTVVAAGINLSVVCPSASRGAEG 62
Query: 80 TLSIFTEFSPMADPSFETGRPSES---AVELGRIVDRGLRESRAVDTESLCVLAGKLVWA 136
+ + EF P F+ R ++ A L + R + E+R VD +L + VW
Sbjct: 63 IVRVTVEFGPACSSRFQHFRYRKANLKAQALSAHLTRVINEARVVDLSALVMKEDAAVWV 122
Query: 137 IRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIH 196
+ + + L++GGNL DA+ +A L++L+ + P + D V E + +PL+I
Sbjct: 123 VDVHVTCLNHGGNLEDASMLAVLSALVDTKLPAVEMKEND-----VMAEVEGDSVPLVIQ 177
Query: 197 HLPIAVTFGFFSSESL---LVIDPTHHEE 222
PI+ TF F + +++DPT EE
Sbjct: 178 SFPISHTFALFDFGDVPVKVLVDPTDEEE 206
>gi|395540147|ref|XP_003772020.1| PREDICTED: exosome complex component RRP42 [Sarcophilus harrisii]
Length = 281
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR +YR ++ GS+ V+LG T I+ V ++ P +RP+EG L
Sbjct: 12 LRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLERPDEGYLEF 71
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE + E+ + R ++D SLC+ + W + +D+ +
Sbjct: 72 FVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKGSIDLTSLCISPREHCWILYVDVLL 131
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA +IA A+L P+ + G D+E+ P + + L + ++P
Sbjct: 132 LECGGNLFDAISIAVKAALFNTSIPKVRVLEDEEGSKDIELSDDP---YDCIRLNVENVP 188
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+T V+D T EEA + + ++ + G + ++K G
Sbjct: 189 CIITLSKIGYRH--VVDATLQEEACSLASLLVSVTSKGVLTCMRKVG 233
>gi|224045546|ref|XP_002199163.1| PREDICTED: exosome complex component RRP42 [Taeniopygia guttata]
Length = 290
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 10/281 (3%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR ++ GS+ V+LG+T I+ + +
Sbjct: 6 LSEAEKLYIVHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGETDILVGIKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++P+EG L F + S + P E E ++ + R +VD +SLC
Sbjct: 66 MGTPKLEKPDEGYLEFFVDCSSNS-PELEGRGGEELGTDIANTLYRIFSCENSVDLKSLC 124
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPPE 186
+ + W + +D+ +L+ GGN+ DA +IA A+L R P+ L E+ + I +
Sbjct: 125 INPKEHCWVLYVDVLLLECGGNIFDAISIAVKAALFNTRIPKVRVLEDEEGTKEIELSDD 184
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ + L I +P VT V+D T EEA + + ++ + G + +++K G
Sbjct: 185 PYDCIRLNIDEVPCVVTLSKIGYRH--VVDATLQEEACSLASLLISVTSKGAITSMKKVG 242
Query: 247 GEGVLQSVIMQCLRLASRMASDI---TKKIKDAVETYNTER 284
+ I + + R+ + +KI D E T R
Sbjct: 243 KGSLDPESIFEMMETGQRVGKSLHIALQKILDEEENLGTSR 283
>gi|392576624|gb|EIW69754.1| hypothetical protein TREMEDRAFT_23063, partial [Tremella
mesenterica DSM 1558]
Length = 236
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ ++++ L+ G R DGR E+R+ S+ G DGSS V+LG T ++ + ++
Sbjct: 13 LHPQQYLSRFLAKGYRPDGRRLNEFREASLNTGSISTADGSSLVRLGSTTVVCGIKAEIA 72
Query: 70 QPYRDRPNEGTLSI-FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
+P P++G L + + + P ++ G PS+ A L + L S VD SLC+
Sbjct: 73 EPTTSSPDKGYLIVPNVDLPALCSPRYKPGPPSDEAQVLSVWLYDLLISSHVVDLSSLCI 132
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+ GK VWA+ ID+ ++ GN DA +A +A+L + E ++
Sbjct: 133 VPGKAVWALYIDVVCINYDGNAFDATVLAVMAALRNTKLHGARYNDETGKVNLI----RG 188
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
E L + +P+A +FG F +E+ L+ DPT E + ++ L+
Sbjct: 189 EKYSLKLGRIPLAASFGIF-NETHLLPDPTSFESPHLSTTISICLD 233
>gi|332374620|gb|AEE62451.1| unknown [Dendroctonus ponderosae]
Length = 174
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++ + IR DGR +YR + + G DGS+ ++G+T ++ V +L +P
Sbjct: 12 KYYRDYYAHDIRPDGREFEDYRPVIVNVGSISTADGSAIAKVGKTTVICGVKAELCRPRP 71
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ PN+G L E SP+ F++G P E A L +++ + SR ++ E LC+L KL
Sbjct: 72 ECPNKGFLVPNLELSPLCSSKFKSGPPGEEAQVLTQLIADVIENSRCINLEELCLLKDKL 131
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASL 162
W + DL LD G+L+DA +A +A L
Sbjct: 132 AWCLYADLVCLDYDGSLLDACIVALMACL 160
>gi|281348318|gb|EFB23902.1| hypothetical protein PANDA_021543 [Ailuropoda melanoleuca]
Length = 196
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 6/199 (3%)
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+ P+ F +G P E A + + + S+ + E LC+ GKL W + D+ L
Sbjct: 4 VDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLSWVLYCDIICL 63
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GN++DA A LA+L + PE ++ E L VH ++ L I P+A +F
Sbjct: 64 DYDGNILDACTFALLAALKNVQLPEVTINEETGLAE-VHLKKKSY---LNIRTHPVATSF 119
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
F ++LL++DPT EE + G +T ++ G +C + KPG G+ + + C+ A
Sbjct: 120 AVF-DDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCLHKPGI-GLTGAKLQDCMSRAVT 177
Query: 265 MASDITKKIKDAVETYNTE 283
++ K + + +++ ++
Sbjct: 178 RHKEVKKLMDEVIKSMKSK 196
>gi|389612638|dbj|BAM19744.1| unknown protein, partial [Papilio xuthus]
Length = 204
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 50 SSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGR 109
S+ V+ G T ++ +L P + P+ G L E P+ P F G PS+ A +
Sbjct: 12 SALVKYGNTTVICGTKLELAAPKAEDPDSGFLVTNVELVPLCSPKFRPGPPSDHAQVISN 71
Query: 110 IVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 169
+V + S+ ++ + LC+++ KL W + D+ LDN GN+VDA A ASL T P
Sbjct: 72 VVSEIINNSKFINLKDLCIVSDKLAWVLYCDIVCLDNDGNVVDACITALTASLKTLSLPT 131
Query: 170 CSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFF--SSESLLVIDPTHHEEAVMVG 227
+ E + E+ V + + L ++ LP+A +F F S+L+ DP EE + G
Sbjct: 132 VTYDPETE-EIKV---DTNNRISLKVNGLPVATSFAIFPNCERSILLTDPNTFEEEMCGG 187
Query: 228 ---KMTATLNANGDVC 240
+T + N NG +C
Sbjct: 188 NGANITVSWN-NGFLC 202
>gi|440292961|gb|ELP86133.1| exosome complex exonuclease RRP42, putative [Entamoeba invadens
IP1]
Length = 265
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 133/279 (47%), Gaps = 27/279 (9%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVT 65
+ L+ +E FI+ +S +R DGR+ ++R+ + + +GS LG+T ++ +
Sbjct: 2 YALSTSEVEFIKEGVSVNVRTDGRSVLQFREFRCERDVIDQANGSVRFFLGRTEVVVGIK 61
Query: 66 GQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTES 125
+L +P NEG ++ ++G + V + +++ L + +
Sbjct: 62 CELEEPQATSSNEGRYTVLVR---------KSGADNVRDVSIEQMITVSLENAGKEMLKK 112
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP 185
LCV GKL W + +D ++++ GN++D ++A A+LL+ P ++ D EV +
Sbjct: 113 LCVSPGKLCWVVYVDAIVVEDDGNVMDCVSLAVRAALLSTLIPVVTVISGDAEEVQIDIN 172
Query: 186 EEREPLPLIIHH----LPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
++ IH LP+ V+ + + V+DP+H EE G +T + +G VC
Sbjct: 173 KDNVQF---IHFEPSALPVCVSLVLL--DEVYVVDPSHTEEMCSGGVLTTAVTESGLVCG 227
Query: 242 IQKPGGEG-----VLQSVIMQCLRLASRMASDITKKIKD 275
IQK GG G VL ++MQ + ++ D+ + D
Sbjct: 228 IQK-GGVGSFKVNVLYDMVMQAQTIGLKVIHDLDDILID 265
>gi|449463354|ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
gi|449503802|ref|XP_004162184.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
Length = 304
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 140/276 (50%), Gaps = 19/276 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+F E L+ IR DGR+ + R +I G +GS+ ++G T ++ + +++ P
Sbjct: 27 QFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSV 86
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG +++ P+ P GRP+E+A + + + + S +D L ++ GK
Sbjct: 87 ESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKA 146
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPE------E 187
W +D++ LD G+L DAA ++A A+ + P +L DD +V+ E E
Sbjct: 147 AWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALN--DDGKVVFVCEEEGGENFE 204
Query: 188 REPL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
+EP+ L ++ +P ++T + ++ DPT EE+VM +T L+++G + +
Sbjct: 205 KEPVNKENRKLKLNSIPFSLT--CLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSF 262
Query: 243 QKPGGEGV-LQSVIMQCLRLASRMASDITKKIKDAV 277
KPGG + S + C+ L + + ++ + +A+
Sbjct: 263 YKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAI 298
>gi|326435509|gb|EGD81079.1| hypothetical protein PTSG_11024 [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 12/240 (5%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV 69
V + F L +R DGR+ + R +I G DGS V LG+T ++ + +
Sbjct: 13 VYPREFYSRFLEHNVRPDGRSREDPRPCAIAPGTITSSDGSCLVTLGKTSVVCGIKLEFA 72
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
P D N G + P+ F G P A L + +D LC++
Sbjct: 73 DPPLDNDNVGWIVPTVTLPPLCSDRFTPGPPPAEAQRLSEFITDIFCSDTMLDKHDLCII 132
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-DDLEVIVHPPEER 188
GKL WA+ +D+ ++ GN+VDA +AA+A+L + P+ L + DLE + P +R
Sbjct: 133 PGKLSWALYLDIQCVNYDGNVVDACVLAAMAALQSVTLPKVELPSDLSDLEGL--PSIDR 190
Query: 189 EPLPLIIHHLPI--AVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
H L + VT F+ ++ DP EE + MT ++ G +C++ PG
Sbjct: 191 S----AGHALNLKRTVTSCTFAVLDDVLTDPCLEEEDLCSASMTVVVDDAGSICSMCSPG 246
>gi|224010199|ref|XP_002294057.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970074|gb|EED88412.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 489
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 21/203 (10%)
Query: 109 RIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
R+++R L ++D E+LCV +G VW + +D+ +LD+GGN +DA +AA+A+L +R P
Sbjct: 63 RLLERTLLIGGSIDAEALCVQSGVWVWRLHVDVSLLDDGGNSMDACVLAAVAALRHYRLP 122
Query: 169 ECSLGGEDDLE--------------VIVHPPEEREPLPLIIHHLPIAVTFGFFSSES--- 211
E +GG D + I+H ++REP PL +HH P+ TF FS E+
Sbjct: 123 EVDIGGGDGNDDGDDNANNIGYQETTIIH-SDDREPTPLPLHHTPLTATFALFSDETGTT 181
Query: 212 ---LLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASD 268
++DP EE G +T + N G++C + PGG + +M L R +
Sbjct: 182 TSVSALLDPFDREELASDGLLTWSYNKYGEMCCLDFPGGCELRPRQLMASSNLGKRRCIE 241
Query: 269 ITKKIKDAVETYNTERALRKIKR 291
I + ++ A+ T+ ++ R
Sbjct: 242 ICELLETALAEAETKAETERMAR 264
>gi|198424385|ref|XP_002127184.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA-processing protein 42) (Exosome component 7) (p8)
[Ciona intestinalis]
Length = 290
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 8/239 (3%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQ 70
+EK FI + +R DGR+ +YR + ++ G GSS ++LG + ++ V +L
Sbjct: 9 SEKWFIIHGIQDDMRNDGRSCEDYRHIEVETGVVSNTHGSSRLRLGSSELLVGVKVELGS 68
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVL 129
P PNEG + + SP ADPSF+ GR E + + I+ R ++D +L ++
Sbjct: 69 PDPKAPNEGLIHFHVDCSPNADPSFQ-GRGGEDLSANISCILTRIYCNKSSIDLNTLGII 127
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
K W + +D+ IL+ GGNL+DA +IA A+L P + D+ + P++
Sbjct: 128 PHKQCWVVHVDVLILECGGNLLDAVSIAVKAALHNTGVPNIQVTDGDEGTQEISLPDDPN 187
Query: 190 PLPLI-IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ I + P+ VT S V+D + EE + + G ++K GG
Sbjct: 188 DVKFINTVNAPVLVTISKVGSRH--VVDASSEEELCCNASLVMGVTKRGRTTGMRKMGG 244
>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
Length = 290
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 10/240 (4%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQ 70
+EK FI + R DGR EYR + ++ +GS+ ++L T I+ V ++V+
Sbjct: 9 SEKIFILHGVEDNFRYDGRTRSEYRPIEVETDVVSHANGSARLRLANTDILVGVKAEIVK 68
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P + P++G + F + S A P+FE + A +L + R ++D +SLC+L
Sbjct: 69 PTIENPDKGKIEFFVDCSANATPAFEKRGGEDLANDLSSALTRAYSAPESLDLKSLCILP 128
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANI---AALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
W + +D+ IL+ GGNL DA + AAL + R +L G D VI P
Sbjct: 129 KFQCWKLYVDVLILECGGNLFDAVGLGVKAALRNTFIPRVVAAALDGCDPELVISEDP-- 186
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
+ L P+ VT V+DP EEAV G + + + ++ GG
Sbjct: 187 YDCWRLDTSKTPVFVTVMRIGDHC--VVDPGAEEEAVSGGGLLVSYGSGSITSLLKISGG 244
>gi|59809424|gb|AAH89995.1| Exosc7 protein, partial [Rattus norvegicus]
Length = 257
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 49 GSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELG 108
GS+ V+LG T I+ V ++ P +RP+EG L F + S A P FE + E+
Sbjct: 13 GSARVKLGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIA 72
Query: 109 RIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
+ R +VD SLC+ + W + +D+ +L+ GGNL DA +IA A+L R P
Sbjct: 73 NTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP 132
Query: 169 ECSL----GGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
+ G D+E+ P + + L + ++P VT V+D T EEA
Sbjct: 133 RVRVLEDEEGSKDIELSDDP---YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEAC 187
Query: 225 MVGKMTATLNANGDVCAIQKPG 246
+ + ++ + G V ++K G
Sbjct: 188 SLASLLVSVTSKGVVTCMRKVG 209
>gi|430813254|emb|CCJ29382.1| unnamed protein product [Pneumocystis jirovecii]
Length = 280
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 123/254 (48%), Gaps = 9/254 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV 69
++ +++ L+S +R DGR P ++R S+ G GSS ++G T + ++
Sbjct: 17 IDLRQYFRHFLASSLRPDGRTPLQFRSTSMNTGSLSNTYGSSVARMGDTIFTCGIQAEIT 76
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P +RP EG + FSP+ +++ + A + + + + S + SL +
Sbjct: 77 KPSIERPLEGWIVPHITFSPICSQKYKSNHHNHIAQAMLQRILSLMHTSNILPLSSLLIS 136
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
K W + +DL L+ GN +D A IA +++L T + P ++ ED VI ++E
Sbjct: 137 EYKAAWVLYVDLICLNYDGNAMDVAWIALISALETTKLP-LAIWNEDTESVIC----KKE 191
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVI-DPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
L ++ + +FG F S ++ D EE+++ + + + + +I K GG
Sbjct: 192 YKNLKLNQRLFSASFGIFDGSSKYILSDLNDDEESLISETINIIIGNDKQLLSINKNGGI 251
Query: 249 GVLQSVIMQCLRLA 262
+ Q +I+ C++LA
Sbjct: 252 TMTQEMIISCIKLA 265
>gi|328862357|gb|EGG11458.1| hypothetical protein MELLADRAFT_70820 [Melampsora larici-populina
98AG31]
Length = 292
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Query: 48 DGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVEL 107
+GSS V +G T ++ + ++ +P PN+G + E + F+ + +E + +
Sbjct: 72 NGSSLVSIGNTSVLCGIRFEVSEPNFMNPNQGYIIPNIEIGSLCSSKFKPNQINEQSQTI 131
Query: 108 GRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRR 167
+ L+ S ++ SL + KLVW I ID+ L N GN++DA+ I+ +L T +R
Sbjct: 132 LTQLKMILKSSEIIEPSSLVIQPEKLVWVIYIDVICLSNDGNVLDASIISITQALQTAKR 191
Query: 168 PECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVG 227
P+ E + EVI+ P EP+P+ ++H TF F LV DPT EE G
Sbjct: 192 PQVEFDIETN-EVILLDPNFFEPIPIPLNHTIHPFTFSIFEKREWLV-DPTLFEEDHSKG 249
Query: 228 KMTATLNANGDVCAIQKPG----GEGVLQSVIMQCLRLA 262
+T L++ + + G G GVL CL+ +
Sbjct: 250 SVTVVLDSKKKLRYLLVSGEVQQGSGVLND----CLQFS 284
>gi|358058357|dbj|GAA95876.1| hypothetical protein E5Q_02533 [Mixia osmundae IAM 14324]
Length = 280
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 112/241 (46%), Gaps = 9/241 (3%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPY 72
+ ++E L GIR DGR E R S G DGSS V++GQT +M V + +P
Sbjct: 20 RAYLERFLHEGIRPDGRAFDECRPCSSDTGSVTTADGSSLVRVGQTTMMCTVRVETAEPD 79
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
RP+EG L I E P+A F +G PS+ A L + + + S + L + K
Sbjct: 80 LMRPDEGFLIINAELMPIASSQFLSGPPSDDAQVLASRLRQVISSSNMLPLRKLGIRRAK 139
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
V + +D+ L GN +D A +A +L + R P + E++ VI REPL
Sbjct: 140 AVLVVYVDVACLSFDGNALDVAVMAVTQALYSARIPVITFEEENN-RVIASASLPREPLK 198
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L + +F F L DPT HE A T L+ +G + + + G GVLQ
Sbjct: 199 L--SEPVLTCSFALFGQTVL--SDPTDHESAQSRSLATVALSRSGMIRYVLQ-SGHGVLQ 253
Query: 253 S 253
+
Sbjct: 254 A 254
>gi|307111676|gb|EFN59910.1| hypothetical protein CHLNCDRAFT_132943 [Chlorella variabilis]
Length = 301
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 29/249 (11%)
Query: 48 DGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVEL 107
D S+ V++G T + + +++ D P EG L++ E +P+ GRPSE+A L
Sbjct: 39 DASALVKVGSTAALAGIKCEVMPASADTPEEGRLALQVELAPLCSADTRPGRPSEAAAVL 98
Query: 108 GRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRR 167
+ L + VD LC+ GK WA+ +D+++LD G+L DA +A LA+L + R
Sbjct: 99 TEQLSSLLEGAGVVDRRQLCIDPGKAAWAVYVDVYVLDADGSLHDACLLAVLAALSSLRL 158
Query: 168 PECSLGGEDDLE--------------------------VIVHPPEEREPLPLIIHHLPIA 201
++ ++ + P+ + PL++ P++
Sbjct: 159 HAVAVDDTGRIQKAPADAAAAGAAGAQRQQGAADGAATALQQQPQGHQRRPLLLACHPVS 218
Query: 202 VTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL-QSVIMQCLR 260
+T G + L++DPT EE ++ MT T++ +GD+ K GG L + +++C+
Sbjct: 219 LTCGLYRDR--LLVDPTAEEEPLLEAAMTTTVDESGDILGFYKAGGSATLSRERMLECIE 276
Query: 261 LASRMASDI 269
A + + ++
Sbjct: 277 AAKQRSREV 285
>gi|297739657|emb|CBI29839.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 138/282 (48%), Gaps = 23/282 (8%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L IR D R R S+ G DGS+ ++G T ++ V +++ P +
Sbjct: 26 RYHERFLLDSIRPDARPLGRARDTSLALGAVASADGSALAKIGCTTMLAAVKMEVMTPPK 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESA-VELGRIVDRGLRE-------SRAVDTES 125
+ P+EG+++I P+ P GRP+E A V ++ D LR S ++ +
Sbjct: 86 ESPDEGSIAIEFYMPPICSPLVRPGRPAEEAPVVSKQLSDTILRHVNVVTSFSGMINLKE 145
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE----DDLEVI 181
L +++GK W +D++ LD G+L DAA +AA+A+ R P SL E E
Sbjct: 146 LSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEGRVVVVSEEN 205
Query: 182 VHPPEEREPL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
E+EP+ L + LP ++T ++ ++ DPT EE++M +T L+++
Sbjct: 206 EEGKSEKEPVNKGKRKLTLSSLPFSLTCIL--HKNYILADPTAEEESIMETLVTVVLDSS 263
Query: 237 GDVCAIQKPGGEGV-LQSVIMQCLRLASRMASDITKKIKDAV 277
G + ++ KPGG + S + C+ L + ++ + +A+
Sbjct: 264 GQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAI 305
>gi|66814304|ref|XP_641331.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
gi|74855928|sp|Q54VM4.1|EXOS7_DICDI RecName: Full=Putative exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|60469358|gb|EAL67352.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
Length = 324
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 132/309 (42%), Gaps = 63/309 (20%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQT-------- 58
+++ +E FI+ + + IR DGRN +YR +I+ G +GS+ V+L QT
Sbjct: 3 KISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVKA 62
Query: 59 ---HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA-VELGRIVDRG 114
HI +T L Q D S+ P A P FE G+ SE +EL + ++R
Sbjct: 63 EITHIQSEITSNLQQS--DTSKRLVFSV--NCCPSASPEFE-GKGSEFLNIELSKQLERL 117
Query: 115 LRESRAV----------------------------------------DTESLCVLAGKLV 134
+ D +++GK
Sbjct: 118 YSHPNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYY 177
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPPEEREPLPL 193
W + +D +LD+ GNL DA +IA ++L R P ++ GE + + + L L
Sbjct: 178 WTLYVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSL 237
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
I ++PI VT ++ VID T EE M ++T +N+ ++C+IQK G +G+ +
Sbjct: 238 SIDNVPICVTLTKIGNQ--FVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPT 295
Query: 254 VIMQCLRLA 262
I Q + A
Sbjct: 296 TINQMINTA 304
>gi|449467882|ref|XP_004151651.1| PREDICTED: exosome complex exonuclease RRP42-like, partial [Cucumis
sativus]
Length = 195
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 90/160 (56%), Gaps = 8/160 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI+ ++ +R DGR YR +SI+ + +GS+ V++G T ++ V +
Sbjct: 4 LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-----VD 122
L +P +P++G +SI + SP A+P+FE E + EL ++R L ++ +D
Sbjct: 64 LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGID 123
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASL 162
SL V+ GKL W + I+ ++ + GNL+DA A A+L
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAAL 163
>gi|397475927|ref|XP_003809367.1| PREDICTED: exosome complex component RRP42-like [Pan paniscus]
Length = 164
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFR 166
+ + W + +D+ +L+ GGNL DA +IA A+L R
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTR 164
>gi|194381296|dbj|BAG58602.1| unnamed protein product [Homo sapiens]
Length = 164
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFR 166
+ + W + +D+ +L+ GGNL DA +IA A+L R
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTR 164
>gi|224090167|ref|XP_002308947.1| predicted protein [Populus trichocarpa]
gi|222854923|gb|EEE92470.1| predicted protein [Populus trichocarpa]
Length = 318
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 32/274 (11%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E LS IR D R R ++ G GS+ ++G T ++ + +++ P
Sbjct: 26 RYFERHLSESIRPDARPLGRARDTTLALGAVASAHGSALAKIGSTTMLAAIKMEVMTPST 85
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESA----VELGRIVDRGLRESRAVDTESLCVL 129
+ P EG+++I P+ P GRP+E+A +L + R + S ++ + L ++
Sbjct: 86 ESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISRQVN-SGMINLKELSLV 144
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAAL-----ASLLTFRRPECS------------- 171
+GK W +D++ LD G L DAA ++A+ ++ + +R C+
Sbjct: 145 SGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHSAFIYYRSLICAVQIPIVSLNDDGK 204
Query: 172 ---LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGK 228
+ EDD + P +E L + +P ++T ++ ++ DPT EE++M
Sbjct: 205 IVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTCILH--KNYILADPTAEEESIMETL 262
Query: 229 MTATLNANGDVCAIQKPGGEGVLQ-SVIMQCLRL 261
+T L+++ + + KPGG + Q S + C+ L
Sbjct: 263 VTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVAL 296
>gi|325187967|emb|CCA22510.1| exosome complex exonuclease RRP42like protein putati [Albugo
laibachii Nc14]
Length = 298
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 14/252 (5%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEV--QLGQTHIMGFV 64
+L+ +E +FI+ ++ +R DGR+ +R + ++ +GS+ V Q T ++ V
Sbjct: 2 QLSTSELQFIKEGIACNVRADGRSRTSHRNVMLETSLLPHSNGSARVKQQNFGTDVLASV 61
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRP-SESAVELGRIVDRGLRESRAVDT 123
+++ P + PN G L++ P GR E +EL +++ R +++D
Sbjct: 62 KLEVLSPSLEAPNSGVLNVNVTCFPSISSKITNGRALDEINIELSQLMQRIFTSHKSIDL 121
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
C++ + VW I +D+ + ++ G+L D +IA A+L P + G + E I+
Sbjct: 122 NKFCIVPSQFVWGIFVDVVVYESTGSLPDLISIAMYAALKKTLFPCVRMLGVEGDEKILQ 181
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLL----VIDPTHHEEAVMVGKMTATLNANGDV 239
ER+P +L V F ++ + V+DPT EE + + LN G +
Sbjct: 182 V--ERDPAAG--EYLAATVCFPLCTTICKIGNYSVMDPTLEEELCVSTQNVVALNREGSI 237
Query: 240 CAIQKPGGEGVL 251
C IQK G+G +
Sbjct: 238 CGIQKRYGDGAI 249
>gi|332375881|gb|AEE63081.1| unknown [Dendroctonus ponderosae]
Length = 283
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 5/163 (3%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ R+DGR+ YR + ++ GS+ ++L T ++ V +
Sbjct: 3 LSQAEKTFILHGVAENFRVDGRDREGYRPMELETDIVQHAFGSARLRLANTDVLVAVKIE 62
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESL 126
+ P ++P EG + F + S A P FE GR ES AVEL I+ D L
Sbjct: 63 VDTPLPEKPFEGKIEFFVDCSANATPDFE-GRGGESLAVELANILSSAYESPLTFDLRKL 121
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 169
C+L GK W + +D+ IL+ GGNL DA ++A A+L + P+
Sbjct: 122 CILKGKKCWKLYVDVLILECGGNLFDAVSLAVKAALHITQVPK 164
>gi|302837568|ref|XP_002950343.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
gi|300264348|gb|EFJ48544.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
Length = 311
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 52/314 (16%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL 68
+ E F + ++ + +R+DGR+ + R + ++ G + GS+ +++G T ++ V ++
Sbjct: 3 STGEAAFCQISIENDVRLDGRSCHDMRPVELELGVIAQAAGSARLRMGATDVIVGVKVEV 62
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVE-LGRIVDRGLRES-RA------ 120
P PN+G L + EFSP A P ++ GR E+ E + +++ L S RA
Sbjct: 63 GSPSSSAPNQGRLQVTVEFSPCASPIYK-GRFGETYGEQIAAVIESSLAPSGRAGGGGGG 121
Query: 121 -------------------------------VDTESLCVLAGKLVWAIRIDLHILDNGGN 149
+D LC+L GK W + +D +L++ GN
Sbjct: 122 GVAYDGTLPTAASPHLRGAPPSSSSGTPGPGLDLSKLCILPGKTAWVLFVDALVLNDDGN 181
Query: 150 LVDAANIAALASLLTFRRPEC----SLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFG 205
++ A + A LA+L R P+ GE+++E+ P L + LP+ VT
Sbjct: 182 VLGAVSAATLAALQHTRIPKVEAVRDAAGEEEIELDDSPGAAWR---LDVSALPLVVTTS 238
Query: 206 FFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRM 265
S+ V+D T EE + +N G +C G GV S+++ + A ++
Sbjct: 239 RVGSQC--VMDLTAQEERCSTSALHVAVNRKGQLCGTTLSGRTGVETSMLLMMMETAQKL 296
Query: 266 ASDITKKIKDAVET 279
+ ++ ++T
Sbjct: 297 GPILWDQLMGFLQT 310
>gi|170091308|ref|XP_001876876.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648369|gb|EDR12612.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 276
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 15/269 (5%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
++ + ++E L+ +R DGR R L++ G DGS+ V+LG T ++ V ++
Sbjct: 13 LHPRVYLERFLAENVRPDGRPLNVARDLAVNVGSISTADGSALVRLGNTTVVCGVKAEIA 72
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P D G L + M P F+ G PSE A L ++ L S + SL +
Sbjct: 73 EPELDEGVRGFLVPNLDLPAMCSPRFKPGPPSEEAQVLSDRLNDALVASNILPLTSLSIH 132
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
K W + +D ++ GN+ DAA IA + +L + P+ + E +
Sbjct: 133 PNKAAWVLYVDAICINYDGNVFDAALIAMVEALRNTQLPKATYDEETGRTTC----SRKI 188
Query: 190 PLPLIIHH--LPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL-NANGD----VCAI 242
+PL ++H LP+ ++FG F S +L DPT EE ++ ++ + NAN D V +
Sbjct: 189 KVPLELNHTSLPVPLSFGVFDSTHVLA-DPTSFEEPLLDTTISIIMSNANPDRLISVSQL 247
Query: 243 QKPGGEGVLQSVIMQCLRLASRMASDITK 271
G + +L V +R + SDI K
Sbjct: 248 GAGGNDALLTCVEAARVRCREIVGSDIYK 276
>gi|125811424|ref|XP_001361870.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
gi|54637046|gb|EAL26449.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
Length = 296
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 12/221 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + R DGR+ +YR + ++ G GS+ ++L T I+ + +
Sbjct: 6 LSEAEKTFILHGVEEDFRCDGRSRRDYRPMELETGLVSNSSGSARLRLANTDILVGIKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL ++ A D +LC
Sbjct: 66 IDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELVLALENAYESPLAFDYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P+ + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALHNTKLPQVTASLLDAGVTDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
P + L I +P+ VT L +DP+ EEA
Sbjct: 186 PYDCTR---LTIDTVPLLVTVCKIGDYCL--VDPSAEEEAC 221
>gi|168006598|ref|XP_001755996.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692926|gb|EDQ79281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 319
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 126/288 (43%), Gaps = 33/288 (11%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+F E L S +R DGR R S+ G DGS+ V++G T ++ V +++ P
Sbjct: 29 QFYERHLDSDVRPDGRPLTRARPTSVNLGSIATADGSALVKIGNTTMLAGVKLEVITPST 88
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
PN+G +++ + + P GRP+E+A + + L S V+ + LC++ GK
Sbjct: 89 ASPNQGQVAVDFQMPSICSPLVRPGRPAEAAWVVSEQLSNALVSSNFVNLQQLCIVPGKA 148
Query: 134 VWAIRIDLHILDNGGNL----------------VDAANIAALASLLTFRRPECSLGGEDD 177
W +D++ LD G+L + A + ++ + G E D
Sbjct: 149 AWIAYVDVYCLDADGSLLDAALLAAVAALTHLQLPAVKVTETGRVVPLKNHNGDAGQEVD 208
Query: 178 L------EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTA 231
+ IV + E +PIA+T S L+ DP+ EE+++ +T
Sbjct: 209 SIAKKNEDQIVKSRQRLER-----SSMPIALT--CVSHRKHLLADPSAEEESILQMSLTV 261
Query: 232 TLNANGDVCAIQKPGGE-GVLQSVIMQCLRLASRMASDITKKIKDAVE 278
++ +G + + KPGG + + C+ L + +++ ++A E
Sbjct: 262 IMDTSGRLISFYKPGGAVAATSATVKDCIELTKKRVAEVNSIFEEAYE 309
>gi|384250624|gb|EIE24103.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 119/258 (46%), Gaps = 23/258 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
K++ +R DGR+ + R L + G + GS+ LG T ++ V ++ P
Sbjct: 7 KQYTVQGFQDDLREDGRSCRDVRPLKLALGVLQQCSGSARCSLGNTEVLVGVKVEIGVPL 66
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR-----AVDTESLC 127
+ P+ G L + E SP A PS++ + VEL + ++R L+ R VD +L
Sbjct: 67 EETPDCGGLQVTVECSPCAGPSYQGKSGEDLGVELTKSLERYLKPGRSGKGGCVDLRALS 126
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG------EDDLEVI 181
+++G+ W + ID IL G+++DA ++AA A+L R P +G E +LE+
Sbjct: 127 IVSGRRCWILCIDALILAADGSVLDALSVAAKAALQDTRIPLVEVGATENPDEEPELELD 186
Query: 182 VHPPEERE----PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG 237
P + +P+I + V F + ++D + EE + + +N G
Sbjct: 187 DDPAHATQVDTSSVPVI-----VTVYIVMFQAGRAYILDASSQEETCIDSAVQVAVNGGG 241
Query: 238 DVCAIQKPGGEGVLQSVI 255
+C + K G V +V+
Sbjct: 242 KLCGLFKVGPSAVNPAVL 259
>gi|194757229|ref|XP_001960867.1| GF11284 [Drosophila ananassae]
gi|190622165|gb|EDV37689.1| GF11284 [Drosophila ananassae]
Length = 296
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 19/278 (6%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTFILHGVEEDFRCDGRSRRDYRPMELETGVVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL + +A D SLC
Sbjct: 66 IDVPSPLAPEYGKLEFFVDCSANATPDFEGRGGSDLAQELILSLQNAYESPQAFDYRSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ +L+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILVLECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA-NGD--VC 240
P + + I P+ VT L +DPT EE + +++ NG+ +
Sbjct: 186 PYDCTR---IGIETAPLLVTVCKIGDYCL--VDPTAEEEGCSTVSIVVSVSMRNGEPYLS 240
Query: 241 AIQKPGGEGVLQSVIMQCLRL----ASRMASDITKKIK 274
GG + + + CL+L ++ + +TK +K
Sbjct: 241 GTHMTGGGSMHRDTMQNCLQLGLSIGEQLNTLLTKMLK 278
>gi|70944649|ref|XP_742234.1| exoribonuclease PH [Plasmodium chabaudi chabaudi]
gi|56521094|emb|CAH75418.1| exoribonuclease PH, putative [Plasmodium chabaudi chabaudi]
Length = 281
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 28/279 (10%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++IE ++S IR+DGR YR + I DGSS V + +++ + L+ P +
Sbjct: 5 KYIEEGINSNIRVDGRTLLTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLPPDQ 64
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ +EG F S + R + +E+ + L +D + LCVL K
Sbjct: 65 NSIDEG----FVNLQIDCPASVASNRIKKEHLEIMTSIIYDLCIKNNIDKKKLCVLPSKF 120
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP---------ECSL-----GGEDDLE 179
VW I I++ +L+ GG L+D +IA +L P E ++ E +LE
Sbjct: 121 VWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELE 180
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
++ E E LP ++PI ++ G +++ + D + EE ++ + ++G
Sbjct: 181 IV-----ENEKLPFPCDNIPICISIGEINNK--YIYDMSKIEEELVENVFVVAVTSSGKC 233
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
A K G + S I+ + +++ ++ KKI +A+E
Sbjct: 234 VAFHKLYGISMEISSILNMSENSVQISQNLFKKINEAIE 272
>gi|401881827|gb|EJT46109.1| hypothetical protein A1Q1_05320 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701090|gb|EKD04244.1| hypothetical protein A1Q2_01463 [Trichosporon asahii var. asahii
CBS 8904]
Length = 312
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 26/259 (10%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
++ ++++ L+ G R DGR +R +SI +GS+ V++G T I+ + ++ +P
Sbjct: 30 LHPDQYLQRFLAQGYRPDGRKVSAWRDVSINVA--EGSALVRMGDTTIVCGIKAEIAEPS 87
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
P+EG + + ++ P F+ G P + A + ++ L SR + +SL + GK
Sbjct: 88 GAAPDEGFVVPNIDLPALSSPKFKPGPPVDEAQTMSNWLNDMLVSSRTLPPKSLIIAPGK 147
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
W I ID+ ++ GN DAA +A +A+L R P E + + + +++ PLP
Sbjct: 148 AAWVIYIDVVCINYDGNAYDAAVLAVMAALRNTRLPSAKY-DETTFQTVCN-WDDKHPLP 205
Query: 193 LIIHHLPIAVTFGFF--------------------SSESLLVIDPTHHEEAVMVGKMTAT 232
L +P+ +FG F S + L+ DPT E+ ++ +T
Sbjct: 206 L--GRMPLCASFGVFESAGTVLDSSSHPAAKILVADSRTYLLPDPTAFEQPLLPTTITIA 263
Query: 233 LNANGDVCAIQKPGGEGVL 251
L+ N +++ G GV+
Sbjct: 264 LDENNRAATVRQEGLGGVV 282
>gi|195170324|ref|XP_002025963.1| GL10119 [Drosophila persimilis]
gi|194110827|gb|EDW32870.1| GL10119 [Drosophila persimilis]
Length = 296
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 12/221 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + R DGR+ +YR + ++ G GS+ ++L T I+ + +
Sbjct: 6 LSEAEKTFILHGVEEDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGIKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL ++ A D +LC
Sbjct: 66 IDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELVLALENAYESPLAFDYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALHNTKLPRVTASLLDAGVTDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
P + L I +P+ VT L +DP+ EEA
Sbjct: 186 PYDCTR---LTIDTVPLLVTVCKIGDYCL--VDPSAEEEAC 221
>gi|302816705|ref|XP_002990031.1| hypothetical protein SELMODRAFT_428535 [Selaginella moellendorffii]
gi|300142342|gb|EFJ09044.1| hypothetical protein SELMODRAFT_428535 [Selaginella moellendorffii]
Length = 542
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 50/215 (23%)
Query: 22 ALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL--VQPYRDRPNEG 79
A + +R DGR PF+ R+L I F + G + LG + I V+ + V P+
Sbjct: 10 AAPAWVRYDGRGPFDARRLII-FPSKTGV--IYLGTSVIQASVSASVESVHPF------- 59
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ TEF +P + G P E + R+ + +E +C + GK ++RI
Sbjct: 60 -FNVHTEFD---EPPLDIG-PEELS-----------RKITCLLSECVCAMPGK---SLRI 100
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
+ + GGN++D ANIA LA++L+F+R E E +V + LP
Sbjct: 101 AIWVRHQGGNVIDGANIAVLAAILSFQRREA--------EFMVK-----------VQQLP 141
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
I VTFG F S L+V+DP EE ++ G +T T++
Sbjct: 142 ITVTFGVFDSNELVVLDPCFREEPLLRGTLTFTVS 176
>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
Length = 276
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 20/258 (7%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL-VQPYR 73
F L +R DGR+ + RK +I G DGSS V++G T ++ V ++ +P
Sbjct: 12 FYRKFLIRSVRPDGRSLNDTRKTTISTGSVTTADGSSFVKIGNTSVVCGVRAEVGEKPST 71
Query: 74 DRP------NEGTLSIFT--EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTES 125
D+ N +IF E P+ +F + +PS+ A+ L ++ + DT+
Sbjct: 72 DKSKLQSINNHENSNIFINIELGPICSNTFSSTKPSDMAMTLCSRLNSLINRLEIPDTDF 131
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP 185
GK +W + +D++ LD GN+ DAA ++ L++L + P+ + D+ +
Sbjct: 132 YFDEEGKALWYLYVDIYCLDYDGNIYDAAVLSILSALKNVKLPKGIIENNDE-----YYK 186
Query: 186 EEREPL-PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+ +PL L I H I +F E ++ DP+ EE + G + T N + ++C +
Sbjct: 187 DLEQPLRELNIKHYLIPTSFSVI--EDYILSDPSLEEEKLSTGTINITYNEHKEICLLLV 244
Query: 245 PGGEGVLQSVIMQCLRLA 262
G + +S + +C++ A
Sbjct: 245 TGINSISESNLKECMKKA 262
>gi|195383888|ref|XP_002050657.1| GJ22278 [Drosophila virilis]
gi|194145454|gb|EDW61850.1| GJ22278 [Drosophila virilis]
Length = 296
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTFILHGVEEDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL + A D +LC
Sbjct: 66 IDVPNPLTPQFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPFAFDYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLYDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
P + + I +P+ VT L +DPT EE
Sbjct: 186 PYDCTR---IGIDAVPLLVTVCKIGDYCL--VDPTAEEEVC 221
>gi|256066133|ref|XP_002570477.1| exonuclease [Schistosoma mansoni]
gi|353231507|emb|CCD77925.1| putative exosome complex exonuclease rrp42 (ribosomal rna
processing protein 42) [Schistosoma mansoni]
Length = 254
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 28/270 (10%)
Query: 29 IDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFT 85
+DGR P EYR L I+ GS+ +++G+T I+ V ++ +P +EG + I
Sbjct: 1 MDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPSLTNTSEGRIEINV 60
Query: 86 EFSPMADPSFETGRPSESAV-ELGRIVDRGLRES---RAVDTESLCVLAGKLVWAIRIDL 141
E P A T R +E A EL + L+ + + +D LC+ G+ W I IDL
Sbjct: 61 ECYPTA-----THRCNEKAASELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVIYIDL 115
Query: 142 HILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIH--HLP 199
IL+ GNL+DA+++ A+LL + L L V + E E H LP
Sbjct: 116 LILEGAGNLLDASSLVVKAALLNATQLNSLL-----LSVFQNNSESLEAGVQQFHGDMLP 170
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV-LQSVIMQC 258
+ +T L ID + EEA + +++ + +G + ++++ G L+S++
Sbjct: 171 LFITVHKIGKAYL--IDASKEEEACSLSRLSLVIYPDGSIGSLEQDGCCSCQLESIVEM- 227
Query: 259 LRLASRMASDITKKIKDA-VETYNTERALR 287
S++AS + KK+ A V+T ER LR
Sbjct: 228 ----SQLASIVGKKLNHALVKTLELERQLR 253
>gi|302771127|ref|XP_002968982.1| hypothetical protein SELMODRAFT_409742 [Selaginella moellendorffii]
gi|300163487|gb|EFJ30098.1| hypothetical protein SELMODRAFT_409742 [Selaginella moellendorffii]
Length = 497
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 50/215 (23%)
Query: 22 ALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQL--VQPYRDRPNEG 79
A + +R DGR PF+ R+L I F + G + LG + I V+ + V P+
Sbjct: 10 AAPAWVRYDGRGPFDARRLII-FPSKTGV--IYLGTSVIQASVSASVESVHPF------- 59
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ TEF +P + G P E + R+ +E +C + GK ++RI
Sbjct: 60 -FNVHTEFD---EPPLDIG-PEELS-----------RKITCFLSECVCAMPGK---SLRI 100
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
+ + GGN++D ANIA LA++L+F+R E E +V + LP
Sbjct: 101 AIWVRHQGGNVIDGANIAVLAAILSFQRREA--------EFMVK-----------VQQLP 141
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
I VTFG F S L+V+DP EE ++ G +T T++
Sbjct: 142 ITVTFGVFDSNELVVLDPCFREEPLLRGTLTFTVS 176
>gi|68076189|ref|XP_680014.1| exoribonuclease PH [Plasmodium berghei strain ANKA]
gi|56500878|emb|CAH99972.1| exoribonuclease PH, putative [Plasmodium berghei]
Length = 281
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 127/283 (44%), Gaps = 28/283 (9%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++IE ++S IR+DGR YR + I DGSS V + +++ + L+ P +
Sbjct: 5 KYIEEGINSNIRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSLLPPEQ 64
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+EG F S + R + +++ + L +D + LCVL K
Sbjct: 65 HSIDEG----FVNLQIDCPASVASNRIKKEHLQIMTSIIYDLCIKNNIDKKKLCVLPSKF 120
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP---------ECSL-----GGEDDLE 179
VW I I++ +L+ GG L+D +IA +L P E ++ E +LE
Sbjct: 121 VWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELE 180
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
++ E E LP ++PI ++ G +++ + D + EE ++ + ++G
Sbjct: 181 IV-----ENEKLPFPCENIPICISIGEINNK--YIYDMSKIEEELVENVFVVAVTSSGKC 233
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNT 282
A K G + S I+ + +++ ++ KKI +A++ T
Sbjct: 234 VAFHKLYGISMEVSSILNMSENSVKISQNLFKKINEAIDKIQT 276
>gi|281206474|gb|EFA80660.1| hypothetical protein PPL_06243 [Polysphondylium pallidum PN500]
Length = 278
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 129/269 (47%), Gaps = 19/269 (7%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F L +R DGR+ R ++ G DGSS V++G T ++ V ++ + +D
Sbjct: 12 FYRKFLERSVRPDGRSLQRIRNTTVSAGSILTADGSSFVKIGNTSVICGVRAEIAEKQQD 71
Query: 75 RPNEGT----LSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV-L 129
+ T + + E P+ F + +PSE A+ L +++ L + +D + L +
Sbjct: 72 QTTSNTCKSQIIVNIEMGPICSNIFSSTKPSEKAMSLCTQLNQ-LVQLLDIDPKQLYFDV 130
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
GK +W + +DL+ LD GN++DAA IA L++L + P+ + +D EV EE
Sbjct: 131 DGKYLWYLYVDLYCLDYNGNILDAAIIAMLSALKNVKLPK-GVVSDDGSEVY---KEEDT 186
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
LII+ I ++F + ++ DP+ EE + G ++ N ++C G
Sbjct: 187 MRTLIINSYLIPLSFAVI--DEYVLSDPSLEEEKLSNGSISIVYNEKRELCLQLYSGITP 244
Query: 250 VLQSVIMQCLRLASRMASDITKKIKDAVE 278
+ + + QCL + T++IKD ++
Sbjct: 245 LDEKTLQQCLDQTKQR----TQEIKDLID 269
>gi|195121612|ref|XP_002005314.1| GI19145 [Drosophila mojavensis]
gi|193910382|gb|EDW09249.1| GI19145 [Drosophila mojavensis]
Length = 296
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 12/217 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK FI + R DGR+ +YR + ++ G GS+ ++L T I+ V ++ P
Sbjct: 10 EKTFILHGVEEDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTEIDVP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P G L F + S A P FE S+ A EL + A D +LC++ G
Sbjct: 70 NPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPYAFDYRTLCLIPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEE 187
+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +P +
Sbjct: 130 QQCWKLYIDILILECGGNLHDAVSLAAKAALYNTKLPRVTATLLDAGVTDLIISDNPYDC 189
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
+ I +P+ VT L +DPT EE
Sbjct: 190 TR---IGIDAVPLLVTVCKIGDYCL--VDPTAEEEVC 221
>gi|147770895|emb|CAN74168.1| hypothetical protein VITISV_005208 [Vitis vinifera]
Length = 305
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 127/268 (47%), Gaps = 25/268 (9%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+V EK FI+ ++ +R DGR YR +++ G + +GS+ V+LG T ++ V +
Sbjct: 4 LSVGEKHFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAE 63
Query: 68 LVQPYRDRPNEGT----LSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
L +P +P++G + TE S G+ AV ++ L +D
Sbjct: 64 LGKPSPSQPDKGKGRGGEELSTELSGALQHCLLGGK--SGAVGDMEVLTNVL--GAGIDL 119
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--ECSLGGEDDLEVI 181
SL V+ GK+ W + ID ++ + GNL+DA A A+L P E ++G D
Sbjct: 120 SSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGD---- 175
Query: 182 VHPPE----EREPLPLIIHHLPIAVTFGFFSSESL---LVIDPTHHEEAVMVGKMTATLN 234
PE + E L +P+ VT + + ++D T EE+ M ++ +++
Sbjct: 176 -GLPEVDISDDEYLQFDTSGVPVIVTLTKVAQYHVGRHYIVDATLEEESQMSSAVSVSVS 234
Query: 235 ANGDVCAIQKPGGEGVLQSVIMQCLRLA 262
G +C + K GG G+ SVI+ + +A
Sbjct: 235 GQGRICGLIKRGGAGLDPSVILDMISVA 262
>gi|409079432|gb|EKM79793.1| hypothetical protein AGABI1DRAFT_38968 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 352
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 22/220 (10%)
Query: 13 VNEKRFIETALSSGIRIDGR-----------NPFEYRKLSIKFGR---EDGSSEVQLGQT 58
++ + ++E L+ +R DGR +R +SI G DGS+ V++G +
Sbjct: 23 LHPRVYLERFLTENVRPDGRAIGCVMDGMGVKGEIWRDVSINVGSINTADGSALVRMGGS 82
Query: 59 HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES 118
I+ V ++ +P + P+EG L + M P F+ G PS+ A L + L S
Sbjct: 83 TIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFKPGPPSDEAQVLSERLFETLTSS 142
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
+ +SL V GK VW + +D ++ GN+ DA IA +++LL R P+ ++ ED
Sbjct: 143 NFMSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLIAMVSALLNTRLPK-AVYNEDTG 201
Query: 179 EVIVHPPEEREPL-PLIIHHLPIAVTFGFFSSESLLVIDP 217
+ + + RE PL + LP+ +FG F +S ++I P
Sbjct: 202 QTMCY----RESTSPLALFGLPLPTSFGIF--DSYVIITP 235
>gi|195430734|ref|XP_002063403.1| GK21414 [Drosophila willistoni]
gi|194159488|gb|EDW74389.1| GK21414 [Drosophila willistoni]
Length = 296
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 12/231 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTFILHGVEENYRCDGRSRKDYRPMELETGLVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL + + D +LC
Sbjct: 66 IDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILALQNAYESPLSFDYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALYNTKLPRVTASLLDAGITDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
P + L I +PI VT L +DP+ EE M ++
Sbjct: 186 PYDCTR---LEIGTVPILVTVCKIGDYCL--VDPSAEEEVCSTVSMVVAIS 231
>gi|83314648|ref|XP_730452.1| 3' exoribonuclease domain 1 [Plasmodium yoelii yoelii 17XNL]
gi|23490177|gb|EAA22017.1| 3' exoribonuclease family, domain 1, putative [Plasmodium yoelii
yoelii]
Length = 281
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 28/279 (10%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++IE ++S IR+DGR YR + I DGSS V + +++ + L+ P
Sbjct: 5 KYIEEGINSNIRVDGRTLLTYRTIEINKSILVSADGSSSVMNEENNVICGIKLSLLPPEP 64
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+EG F S + R + +++ + L +D + LCVL K
Sbjct: 65 HSIDEG----FVNLQIDCPASVASNRIKKEHLQIMTSIIYDLCIKNNIDKKKLCVLPSKF 120
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP---------ECSL-----GGEDDLE 179
VW I I++ +L+ GG L+D +IA +L P E ++ E +LE
Sbjct: 121 VWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKAPKKIDELNMFHNTKSKEYELE 180
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
++ E E LP ++PI ++ G +++ + D + EE ++ + ++G
Sbjct: 181 IV-----ENEKLPFPCENIPICISIGEINNK--YIYDMSKIEEELVENVFVVAVTSSGKC 233
Query: 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
A K G + S I+ + +++ ++ KKI +A++
Sbjct: 234 VAFHKLYGISMEVSSILNMSENSVKISQNLFKKINEAID 272
>gi|123974777|ref|XP_001314009.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895992|gb|EAY01157.1| hypothetical protein TVAG_189430 [Trichomonas vaginalis G3]
Length = 329
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 124/283 (43%), Gaps = 40/283 (14%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ NE AL +GIR DGR E RKL ++ G + VQLG T + T +L
Sbjct: 3 LSNNEFEAYTLALKAGIRGDGRRFDESRKLIVQEITTPGVANVQLGNTRVTAITTARLAM 62
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES-RAVDTESLCVL 129
P P +GT +I+ F +S E + R + +S R ++ ESLCV
Sbjct: 63 PALSTPKKGTHNIYI---------FNDTPVQKSTAEAFQTYFRMIWKSCRILEDESLCVK 113
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
G+ VW + L I D+ G +++A A LASL + R P + + V+ P R
Sbjct: 114 VGEKVWMLTTRLIIHDDDGGILEAGFAAILASLGSLRFPSF----DANTGVLFSPLHHR- 168
Query: 190 PLPLIIHHL-----PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+H + I VT FF E +V DPT E + +T A +
Sbjct: 169 -----VHKIAFGVRAILVTVSFF--EDKIVADPTSVE------TLISTRFAR---FVFDE 212
Query: 245 PGGEGVLQSVIM----QCLRLASRMASDITKKIKDAVETYNTE 283
G + L S M Q L LAS +A + K I + V+ +N E
Sbjct: 213 WGNQIYLDSNRMGDYEQSLELASNIAKEWFKSISEQVDNFNPE 255
>gi|294461855|gb|ADE76485.1| unknown [Picea sitchensis]
Length = 302
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 127/276 (46%), Gaps = 17/276 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+F E L+ +R D R R S+ G DGS+ ++G T ++ V +++ P
Sbjct: 23 QFYERHLNDNVRPDARPLGRARATSLALGTVPTADGSAMAKIGHTTMLAGVKLEVMTPAA 82
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ +EG +++ + P+ P GRP ++A + + L S ++ + L + G+
Sbjct: 83 EALDEGRIAVDFQMPPICSPDVRPGRPVDAAAVISEQLSNVLASSGVINLKELSISKGQA 142
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL-----EVIV------ 182
W +D++ LD G L DAA +AA+ + R P S+ E + + ++
Sbjct: 143 AWMAYLDIYCLDADGALFDAALLAAIGAFAHLRFPAVSMTEEGKVIPLSGDTVLEDGNKE 202
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
P + + L + +P ++T + ++ DPT EE+V +T L+ +G + +
Sbjct: 203 QPKVQEQRQQLTLGKVPFSLTCMLYKKH--ILADPTAEEESVFQTTITVVLDPSGRLVSF 260
Query: 243 QKPGGEGVLQ-SVIMQCLRLASRMASDITKKIKDAV 277
KPGG + S I C+ L ++ K + +A+
Sbjct: 261 YKPGGSALASTSTIQDCVALTKYRVKELQKILDEAL 296
>gi|195488381|ref|XP_002092290.1| GE11745 [Drosophila yakuba]
gi|194178391|gb|EDW92002.1| GE11745 [Drosophila yakuba]
Length = 296
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P+ G L F + S A P FE S+ A EL + A D +LC
Sbjct: 66 IDVPNPLTPDFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFDYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATLLDAGITDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEE 222
P + + I +P+ VT L +DP+ EE
Sbjct: 186 PYDCTR---IGIETVPLLVTVCKIGDYCL--VDPSAEEE 219
>gi|322790229|gb|EFZ15228.1| hypothetical protein SINV_06363 [Solenopsis invicta]
Length = 139
Score = 82.0 bits (201), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 29 IDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFT 85
+DGR +R +SI + D S+ +LG T + + +L P D P+ G +
Sbjct: 1 MDGRKFLSFRPISINVSSIVQADSSAIFKLGDTTAVCGIKAELATPKADTPDHGYIVPNV 60
Query: 86 EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILD 145
E SP+ F G PSE A L +++D L S A+D + LC+ KLVW + D+ L+
Sbjct: 61 ELSPLCSSKFRPGPPSEQAQVLSKLIDIILSNSVALDLKDLCICRNKLVWVLYCDILCLN 120
Query: 146 NGGNLVDAANIAALASLLT 164
G+++DA A A+L T
Sbjct: 121 YNGSVIDACTGAMFAALKT 139
>gi|384248099|gb|EIE21584.1| 3'-5'-exoribonuclease/RNA binding-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 13/256 (5%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSE---VQLGQTHIMGFVTG 66
RL NE + +S +R DGR R +I + +S V++G T M +
Sbjct: 19 RLYPNE--YYAKFISKSLRPDGRPLGGARATTIGIHPLESTSSSALVKIGNTTAMAGIKL 76
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
Q D+P EGTL++ E + A GRPS++A + + LR + AV E L
Sbjct: 77 QHFAISSDQPVEGTLAVNMEMAAFASSETRPGRPSDAAQCVQEQIRTALRTAGAVKLEEL 136
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP- 185
+ WA+ +D+++LD G L+D +AA+A+LL + P + D +V+ P
Sbjct: 137 AIDKSH-AWAVFLDIYVLDADGCLLDVCLLAAVAALLGLQLPRVEV--NDQGQVVTKPIS 193
Query: 186 -EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+ + +P+A+T G +S L+ DPT EEA++ ++ ++A+G + + K
Sbjct: 194 GSASDSRRFGLKAVPMALTCGLYSGS--LIADPTSEEEALVASLVSTIVDASGSLVGLYK 251
Query: 245 PGGEGVL-QSVIMQCL 259
GG + +++QC+
Sbjct: 252 AGGHATADEGLLLQCM 267
>gi|195029661|ref|XP_001987690.1| GH22060 [Drosophila grimshawi]
gi|193903690|gb|EDW02557.1| GH22060 [Drosophila grimshawi]
Length = 296
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTFILHGVEEDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL + A D +LC
Sbjct: 66 IDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPFAFDYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATLMDAGITDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
P + + I +P+ VT L +DP+ EE
Sbjct: 186 PYDCTR---IGIDAVPLLVTVCKIGDFCL--VDPSAEEEVC 221
>gi|302509392|ref|XP_003016656.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Arthroderma benhamiae CBS 112371]
gi|291180226|gb|EFE36011.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Arthroderma benhamiae CBS 112371]
Length = 178
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+HILD G L+DA+ +A LA LL FR PE ++ D EV V EE+ P+ L + +P
Sbjct: 22 DVHILDCDGGLIDASCLAILAGLLHFRLPESTV---RDGEVTVFTTEEKVPVQLNLTKIP 78
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
++VTF + ++++D T EEAV G + L+ G++ KP G ++ C
Sbjct: 79 LSVTFNLYDEGRIMLLDATASEEAVSEGSLVVALDKTGEIALYSKPDGAPADPVNMVNCS 138
Query: 260 RLASRMASDITKKIKDAVETYNTERALRKIKRHPTS 295
LA ++ K + +E ++ LR+ KR PT+
Sbjct: 139 TLALEKVRELNKLLAARLE---EDKQLREKKR-PTA 170
>gi|320169517|gb|EFW46416.1| exosome component 7 [Capsaspora owczarzaki ATCC 30864]
Length = 294
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 32/293 (10%)
Query: 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFV 64
T L+ E+ I +++ +R DGR +YR +++ G GS+ V+LG T ++ V
Sbjct: 2 TLALSRFEQEDIAAGVAANLRSDGRLRTDYRPFTVESGIVSNTSGSARVRLGLTDVLVGV 61
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMA-------DPSFETGRPSESAVELGRIVDRGLRE 117
++ +P + +P +G + +FS + D + ET EL + R L+
Sbjct: 62 KAEIGEPDQAKPTQGRFEVTVDFSSTSASAAAFDDDNTET--------ELASAIARTLK- 112
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG---- 173
VD +LC++ G+ W I ID IL GN D ++A A+L R P+ +
Sbjct: 113 --GVDLSALCIVPGEQCWVIYIDALILVAAGNAYDVLSLAVRAALANTRIPKVEVSDDGH 170
Query: 174 GEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL 233
G +LEV P E L I +P+ VT + ++D T EE+ ++ +
Sbjct: 171 GRVELEVSDDPHHVTE---LDIRAVPVIVTLSKIG--AFHIVDATIEEESCAKSRVHVAV 225
Query: 234 NANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
++ G C + K G+ ++ L A ++ + +++ ++ ERAL
Sbjct: 226 DSKGAFCMVTKASAGGIEPQLLFDALESAKQVGQHLLSQLEATLK--QEERAL 276
>gi|194882669|ref|XP_001975433.1| GG20559 [Drosophila erecta]
gi|190658620|gb|EDV55833.1| GG20559 [Drosophila erecta]
Length = 296
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL + A D +LC
Sbjct: 66 IDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFDYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEE 222
P + + I +P+ VT L +DP+ EE
Sbjct: 186 PYDCTR---ISIETVPLLVTVCKVGDYCL--VDPSAEEE 219
>gi|328767734|gb|EGF77783.1| hypothetical protein BATDEDRAFT_91450 [Batrachochytrium
dendrobatidis JAM81]
Length = 319
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ-THIMGFV-- 64
+ V+E+ +I + GIR DGR F+ R + ++ G + GS V + T ++ V
Sbjct: 2 VAVSERDYITKGIQCGIRADGRGSFDSRPVFLETGMITQASGSCRVTIDHGTDVLAGVKV 61
Query: 65 ------------TGQLVQP------------------YRDRPNEGTLSIFTEFSPMADPS 94
TG +V+ + +R N G + E SP A
Sbjct: 62 QVADVEGRVEQYTGDIVEQTGTEVADDLNTSLADGNGFSNRGNVGRIVCSVECSPAASII 121
Query: 95 FETGRPSESAVELGRIVDRGLRESRA-VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDA 153
++ + E ++++R L +D + LC++ G W + +D+ I+D GGN++D
Sbjct: 122 LDSRAIEDMCNEYTQVLNRTLNGPHGGIDLQKLCIIPGSTCWVVSVDVLIMDYGGNVLDT 181
Query: 154 ANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLL 213
+A +L R P+ + E D ++ + ++P+A+T S
Sbjct: 182 VLMAVRGALHNTRLPKTKV-EETDGHFEFDIADDETEVLCGRENIPVALTLSRIGSGH-- 238
Query: 214 VIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASD 268
++D + E+ K+T +NA+G +C +QK G + S ++ + ASR+ S+
Sbjct: 239 IVDASPLEDMCSSSKITVFVNASGCICGVQKTGKGSLEPSTLIDMIETASRLGSE 293
>gi|328871066|gb|EGG19437.1| hypothetical protein DFA_00014 [Dictyostelium fasciculatum]
Length = 294
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 123/275 (44%), Gaps = 15/275 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL-VQPYR 73
F + L +R DGR +RK++I G DGSS V++G T ++ V ++ + P +
Sbjct: 12 FYKKFLERSVRPDGRGLDCFRKINISTGSIMTTDGSSFVKIGNTSVIAGVKAEVALTPTQ 71
Query: 74 DRPNEGT--------LSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTES 125
+ + + + E P+ F + +PSE A+ L ++ + D E
Sbjct: 72 SDNSISSNNNNNNNKMFVNVEMGPICSNIFSSSKPSEKAMSLCSQLNSLVNRLEINDKEL 131
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP 185
GK W + IDL+ LD GNL+DA +A +++L + P+ + E
Sbjct: 132 YFDDQGKYSWYLYIDLYCLDYNGNLMDACVLAIMSALKNVKLPKGIVVESSASEAPQLFK 191
Query: 186 EEREPL-PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+ +P+ L I I TF + L+ DP+ EE + G ++ T N ++C +
Sbjct: 192 DTEQPMRSLNIGTYLIPQTFVLLND--YLLTDPSLEEEKLSSGTISITFNDRFEICTLLY 249
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G + + ++ QCL + +++I I + T
Sbjct: 250 TGITSISEKILEQCLEKTKKRSTEIINLIDNCCTT 284
>gi|148703330|gb|EDL35277.1| exosome component 8, isoform CRA_e [Mus musculus]
Length = 146
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
L W + DL LD GN++DA A LA+L + PE ++ E L + ++
Sbjct: 1 LAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLKKKSY 56
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L + P+A +F F ++LL++DPT EE + G +T + +G +C + KPGG G+
Sbjct: 57 LNVRTNPVATSFAVFD-DTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGSGLTG 115
Query: 253 SVIMQCLRLASRMASDITKKIKDAVET 279
+ + C+ A +++K + + +++
Sbjct: 116 AKLQDCMSRAVTRHKEVSKLLDEVIQS 142
>gi|145344856|ref|XP_001416940.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577166|gb|ABO95233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFGREDG---SSEVQLGQTHIMGFVTGQLVQPY 72
+ E L+SG R DGR R + G G S+ + G T VT + P
Sbjct: 12 REACEKTLASGARGDGRPLGRARARTCATGVASGALGSALAKHGATTACAGVTATIATPD 71
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV----------- 121
RP EG L I + +P A GR RG RE+ A
Sbjct: 72 ATRPEEGFLEIAVDHAPQASEDARDGRT------------RGRREAAAAACASAVANAAV 119
Query: 122 ---DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDD 177
D + LCV G W +R+D+ +L + G D A A +A+L PE ++ G+
Sbjct: 120 LGKDLKQLCVERGTFAWRVRVDVIVLCDDGGAADCAVTAVMAALRDCVLPEVAVTRGKVA 179
Query: 178 LE---VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
LE ++ R+ L + +P+ +T + L++DPT EEA+ +++ L
Sbjct: 180 LEGDGTAMNGDGVRKGTRLDVQTMPVCLTTALYREH--LLVDPTREEEALSECEVSVVLT 237
Query: 235 ANGDVCAIQKPGGE-GVLQSVIMQCLRLASRMASDITKKIKDAVE 278
+G + + KPGGE + +M+C+ A + K + +A E
Sbjct: 238 EDGLLRGVFKPGGEVEATEDTLMKCIAAAKLHYAASAKVVLEATE 282
>gi|357627282|gb|EHJ77019.1| hypothetical protein KGM_00061 [Danaus plexippus]
Length = 839
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 39/296 (13%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+F +S IR DGR + R + + D S+ V+ G T ++ + +L +P
Sbjct: 38 KFFNDYISRDIRPDGRKFNDQRNIKLNVNAIKTADASAVVKCGNTTVVCGIKLELAKPKA 97
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+ G L E P+ F G PS+ A + +V + S+ +D + LC++ KL
Sbjct: 98 EEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNVVSDIVTNSKCIDMKDLCIVPDKL 157
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
W + D+ LD G++VDA I ++SL +
Sbjct: 158 SWVLYCDMVCLDYDGSVVDACLITLMSSLKS----------------------------- 188
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA---NGDVCAIQKPGGEGV 250
H + +S+ + DPT +EE M G + A L A G +C + K GG +
Sbjct: 189 --HQDTFTCAWFTHCYKSVTLTDPTAYEEE-MCGGVGANLIACWNKGQLCGVFKFGGSNL 245
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKE 306
+ L LA + + + K++ ++T T L + T + + S+ E
Sbjct: 246 STENEKETLALAKQKSKLVEKRLS-KIDTNETTGCLYGLMYDSTLLVVGLSLEFFE 300
>gi|167392099|ref|XP_001740016.1| exosome complex exonuclease RRP42 [Entamoeba dispar SAW760]
gi|165896056|gb|EDR23596.1| exosome complex exonuclease RRP42, putative [Entamoeba dispar
SAW760]
Length = 265
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 127/258 (49%), Gaps = 22/258 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
E FI+ + + IR DGR ++R++ + G + +GS + LG+T ++ V +L +P
Sbjct: 8 EINFIKEGIKTNIRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P G ++ + + G + VE+ +++ L + + LCVL G
Sbjct: 68 SILTPESGRYNVLVK---------QVGTMTSRDVEIEKMILVSLENAGKDMLQELCVLKG 118
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEVIVHPP--EE 187
KL W I +D+ ++++ GN++D +A A+LL P ++ G D ++V + +
Sbjct: 119 KLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPIVNVISGDSDTVQVDIDKDNVQF 178
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
++ P +P+ V+ F E + DP+ EE ++T + +NG VC IQK GG
Sbjct: 179 KKFKP---ESVPLCVSLVQFEKE--FIADPSKVEEKCNGSEITTAITSNGKVCGIQK-GG 232
Query: 248 EGVLQSVIMQCLRLASRM 265
G ++ M + + ++M
Sbjct: 233 NGCFKTEEMYDMIIQAQM 250
>gi|67476142|ref|XP_653674.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56470674|gb|EAL48311.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|407034971|gb|EKE37468.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
gi|449710101|gb|EMD49236.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 265
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 127/258 (49%), Gaps = 22/258 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
E FI+ + + IR DGR ++R++ + G + +GS + LG+T ++ V +L +P
Sbjct: 8 EINFIKEGIKTNIRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGVKCELGEP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P G ++ + + G + VE+ +++ L + + LCVL G
Sbjct: 68 SVLTPESGRYNVLVK---------QVGTMTSRDVEIEKMILVSLENAGKDMLQELCVLKG 118
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL--GGEDDLEVIVHPP--EE 187
KL W I +D+ ++++ GN++D +A A+LL P ++ G D ++V + +
Sbjct: 119 KLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPIVNVISGDSDTVQVDIDKDNVQF 178
Query: 188 REPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
++ P +P+ V+ F E + DP+ EE ++T + +NG VC IQK GG
Sbjct: 179 KKFKP---ESVPLCVSLIQFEKE--FIADPSKVEEKCNGSEITTAITSNGKVCGIQK-GG 232
Query: 248 EGVLQSVIMQCLRLASRM 265
G ++ M + + ++M
Sbjct: 233 NGCFKTEEMYDMIIQAQM 250
>gi|389584933|dbj|GAB67664.1| exosome complex exonuclease, partial [Plasmodium cynomolgi strain
B]
Length = 280
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 129/290 (44%), Gaps = 34/290 (11%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++IE +++S IR+DGR YR + I DGSS V + +++ + L+ P
Sbjct: 5 KYIENSINSNIRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPSL 64
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P+EG +++ + S R + +++ + L +D + LC+L K
Sbjct: 65 DAPDEGVINLQID----CPASVAANRIKKDHLQIMSSIIYDLCLKNNIDRKKLCILPSKF 120
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLL-----------------TFRRPECSLGGED 176
VW + I + +L+ GG L+D ++A +L TF +C +
Sbjct: 121 VWGVDISVMVLNAGGGLLDIISMAIYVALKDTIVPVVKAKRKIDESNTFHHTKC---ADY 177
Query: 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
++E+I ++ P ++PI V+ G +++ V D + EE ++ + ++
Sbjct: 178 EVEII---ENQKTNFPY--ENVPICVSIGEINNK--YVYDMSKVEEELVENIFVVAVTSS 230
Query: 237 GDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
G A K G + + I+ +S+++ + +KI +A+ T L
Sbjct: 231 GKCVAFHKLYGISMEIASILNMTENSSKISHHLFEKINEAIAKIQTRSVL 280
>gi|303284571|ref|XP_003061576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456906|gb|EEH54206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 318
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 32/267 (11%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLG----QTHIMGF 63
L+ E ++ + +R DGR +YR+L++ G + GS+ +LG T ++
Sbjct: 3 LSRAEIDYVRDGIDQNMRNDGRTREDYRELTLDLGVIPQATGSARARLGLDAWSTDVIVT 62
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLR------ 116
V + P + P +G L E S +D ++ GR E+ A EL R ++R L
Sbjct: 63 VKADIGAPSAEHPGDGRLRCAVELSSASDTAY-GGRGGEARATELSRALERSLLGATAGS 121
Query: 117 --------ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
E A+D +L + GK W +++D +L + GN++DA ++A A+L + P
Sbjct: 122 SASLSAHGEGCALDMSALGIQRGKSCWILQVDGLVLADDGNVLDALSMATRAALFDAKIP 181
Query: 169 ECS-LGG---EDDLEV-IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEA 223
+ + + G +D E+ + PEE L + +P+ VT S ++D T EE+
Sbjct: 182 KVTAVAGPNPDDPAELELDDDPEECSRLD--VSGVPVIVTLTRVGKHS--IVDATKDEES 237
Query: 224 VMVGKMTATLNANGDVCAIQKPGGEGV 250
+ ++ ++A G V ++ K GG G+
Sbjct: 238 MRDPRLCVGVDATGKVRSVGKRGGGGI 264
>gi|164657360|ref|XP_001729806.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
gi|159103700|gb|EDP42592.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
Length = 313
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 37/288 (12%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ-THIMGFVTGQLVQPYR 73
++E L IR DGR + R +S+ G + GS+ V+LG+ T + VT ++ P
Sbjct: 33 YLERHLKERIREDGRTLDQLRSVSVATGTLSQPFGSALVRLGEGTLVTASVTARIAHPTL 92
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+RPNEG L + S + P + G P E L + L S + +LC+ G
Sbjct: 93 ERPNEGFLIPSVDLSSLCSPLYNAGPPEEEGQVLTHNLQMFLNNSGILPRSALCIEKGLA 152
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL---EVIVHPPEEREP 190
VWAI +D+ + G+++DAA +A +A+ +C L D + P+ +E
Sbjct: 153 VWAIYVDVVCVSAEGSVLDAAALATVAA-----LHDCQLPRIDRFVNSSQAIFDPDTKER 207
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL-NANGDV---------- 239
LPL+ +LPI +T G + S +L D T EE++ G + L + N +V
Sbjct: 208 LPLM--NLPIFMTLGMYESTYVLA-DLTAFEESLCTGSIQVGLVDVNNEVNDPDIAKYDV 264
Query: 240 --------CAIQKPGG-EGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
C + P E +++I C+ A + A + K IKDA++
Sbjct: 265 FWLKVLGPCTTKHPQPLEN--EALIEWCIEKAQKRAQKLRKLIKDALQ 310
>gi|342321513|gb|EGU13446.1| Hypothetical Protein RTG_00162 [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 14/229 (6%)
Query: 18 FIETALSSGIRIDGRNPFE-------YRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQ 67
++E +S G+R DGR E +R +S+ G S+ V+LG+T ++ VT +
Sbjct: 23 YLERFISEGVRPDGRPVGEQAAAADAWRDVSVNTGSVSTAPSSALVRLGKTSVVCGVTLE 82
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P RPNEG + + SP+ P F G P + A L + L S + SL
Sbjct: 83 IAPPDLARPNEGFIVPNVDLSPLCSPLFRPGPPPDEAQVLSSRLRDVLLSSNILPLSSLV 142
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
+ GK VW + ID+ L+ G ++DAA +AA+ +L R PE + D EV E
Sbjct: 143 IEPGKAVWVVYIDVVCLNYDGGVLDAAVLAAVGALRNLRFPETTF-DVDTSEVTCERVAE 201
Query: 188 REPLPLII-HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA 235
P I P +V+FG F+ L+ DPT E + ++T L A
Sbjct: 202 EHPGSRISGRREPFSVSFGVFNGT--LLPDPTLFEAKLCSSEITVVLGA 248
>gi|312372348|gb|EFR20329.1| hypothetical protein AND_20269 [Anopheles darlingi]
Length = 243
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++ + L + IR DGR E R + FG DGS+ ++G T ++ + +L P
Sbjct: 45 KYYKDYLENNIRPDGRELEELRPTAFSFGVIQSADGSAIAKIGNTTVVCGIKAELAAPKA 104
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
PN+G L E SP++ PS+ G PSE A + + ++R +D LCV GKL
Sbjct: 105 VEPNQGYLIPNVEISPVSSPSYRPGPPSEEAQVYSQSLADVFSKARCIDLAQLCVEPGKL 164
Query: 134 VWAIRIDL 141
VW + DL
Sbjct: 165 VWVLYCDL 172
>gi|209876656|ref|XP_002139770.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555376|gb|EEA05421.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 272
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 20/242 (8%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
++V+E+ F+E + GIR DGR+ F++R ++ G +GS+ ++ + I+ + +
Sbjct: 5 ISVSEQFFLENGIEQGIRNDGRDIFDFRIPLVELGVITSANGSARIRNDEVDILTTIKCE 64
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++ P G + I + P+ D + E + ++L + + D LC
Sbjct: 65 VSSPTKN-PTWGDIIINID-CPINDKNDE-----DYTLDLSNTIKDLCFNN--FDLSKLC 115
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL-----GGEDDLEVIV 182
+L+ L W I ID+ I+ NGGN++D + +L R P+ + GE+ + V
Sbjct: 116 ILSNYLCWNIFIDIMIISNGGNILDWLVFSIHCALRNSRIPQVTAKVEIEDGEEKSNLQV 175
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
+P E E +P I +P+ +T G+ ++ +V D EEA + +++ G C I
Sbjct: 176 NPLIE-EGIPFPIKGIPLVITAGYIRNK--IVWDMNIQEEACAKAIIAISVDEYGHCCGI 232
Query: 243 QK 244
+K
Sbjct: 233 KK 234
>gi|28573444|ref|NP_725517.2| Rrp42 [Drosophila melanogaster]
gi|28380797|gb|AAF58076.3| Rrp42 [Drosophila melanogaster]
gi|85857716|gb|ABC86393.1| IP10364p [Drosophila melanogaster]
Length = 296
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 12/221 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + R DGR+ +YR + ++ G GS+ ++L T I+ V +
Sbjct: 6 LSEAEKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P P G L F + S A P FE S+ A EL + A + +LC
Sbjct: 66 IDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFNYRTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
++ G+ W + ID+ IL+ GGNL DA ++AA A+L + P + G DL + +
Sbjct: 126 LIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDN 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
P + + I +P+ VT L +DP+ EE
Sbjct: 186 PYDCTR---IGIETVPLLVTVCKIGDYVL--VDPSAEEEVC 221
>gi|339244851|ref|XP_003378351.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
gi|316972750|gb|EFV56404.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
Length = 309
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 6/215 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
E ++ IR DGR+ +R + I+ +GS+ VQ+G+ + V P
Sbjct: 10 EMFYVTEGFEMNIREDGRSRDRFRPVLIRTNVIESANGSALVQIGEMSVTASVWLDFGTP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P++G + + F + ET + A + RI + A D + LC++ G
Sbjct: 70 LETAPDQGMIEFKSRFFISEESDEETSNDVKEAENISRIFKQAYYSQSAFDRKQLCLVTG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG-EDDLEVIVHPPEEREP 190
+L W +++DL I+ GGNL D A+IA +L P+ ++D I + +
Sbjct: 130 RLCWNLKVDLLIMGKGGNLFDVASIAVKMALHNTIIPQVEASCPKNDTRTINIENDINKG 189
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVM 225
L I ++P+ VT G + ++ +ID E M
Sbjct: 190 FSLNISNVPMLVTIGIYG--TMHIIDMNQKESECM 222
>gi|41614907|ref|NP_963405.1| exosome complex RNA-binding protein Rrp42 [Nanoarchaeum equitans
Kin4-M]
gi|40068631|gb|AAR38966.1| NEQ111 [Nanoarchaeum equitans Kin4-M]
Length = 218
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
+IE L G ID R EYR + IK + + LG T ++ ++ +P
Sbjct: 3 YIEQKLMDGFHIDNRPLLEYRPIKIK--EDQNRVWLSLGNTQVIAGLSISEEEPME--KG 58
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAI 137
+ L + +FSP+A + G P+E + L R++DR LR S A+ E + K V +
Sbjct: 59 KANLIVNADFSPIAGKEYFQGPPTEQDLILARLIDRALRSSNAIALEKHVIDENK-VKSF 117
Query: 138 RIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHH 197
ID+ +L++ GN++DA+ +A + L + +L ER+PL +
Sbjct: 118 YIDVIVLEDDGNILDASMLAVVKLL-----EKANLL-------------ERKPLYI---- 155
Query: 198 LPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
F+ ++++ +DPT EE + K++ ++ ++ +IQK G
Sbjct: 156 -------SFYKYKNIIFVDPTKEEEQISNAKISIAIDGE-NIVSIQKDYG 197
>gi|119585138|gb|EAW64734.1| exosome component 7, isoform CRA_b [Homo sapiens]
Length = 226
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P ++PNEG L F + S A P FE + E+ + R +VD ++LC+
Sbjct: 4 PKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISP 63
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPE 186
+ W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+ P
Sbjct: 64 REHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDP-- 121
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ + L + ++P VT V+D T EEA + + ++ + G V ++K G
Sbjct: 122 -YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMRKVG 178
>gi|225709084|gb|ACO10388.1| Exosome complex exonuclease RRP42 [Caligus rogercresseyi]
Length = 288
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 24/270 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EKRFI + +R+DGR + R + ++ +GS+ ++L T ++ V +L +
Sbjct: 10 EKRFILDGIKEDLRVDGRQRKDVRPMILETDVITHANGSARIRLANTDVLVGVKAELCE- 68
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
DRP G L + + S A P FE + A+E+ + + R D L V
Sbjct: 69 --DRP--GGLEFYVDCSANASPEFEGRGGEDLALEISSTLASSYSDPRVFDPSVLHVFKN 124
Query: 132 KLVWAIRIDLHILD-NGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPE 186
+ W + +D+ IL+ GGNL D +++A ++L + P + GG ++E+ P
Sbjct: 125 RYAWVLHVDVLILEVEGGNLFDVSSLAVKSALFCTQVPRVHIVDVDGGVPEIELSEDP-- 182
Query: 187 EREPLPLIIHHLPIAVTF---GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
E L + P+ V+ G F +++D + HEEA + + +G + +++
Sbjct: 183 -EECFRLNVSGAPVLVSLNRVGHF-----VIVDASPHEEACSSAAIVVAVTPSGRISSLR 236
Query: 244 KPGGEGVLQSVIMQCLRLASRMASDITKKI 273
K G + L A + + + K +
Sbjct: 237 KVGSGSFHIDTLEDALATAGHVGTSLNKAL 266
>gi|221219924|gb|ACM08623.1| Exosome complex exonuclease RRP45 [Salmo salar]
Length = 114
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIM 61
DT L+N E+ F+ A+ R+DGR ++YR + I FG + G V LG+T IM
Sbjct: 3 DTPLSNC------ERDFLLKAIEEKKRLDGRQTYDYRSIKISFGTDYGCCFVDLGKTRIM 56
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE 96
V+ +L+ P +RPNEG + E SPMA P+FE
Sbjct: 57 AQVSCELITPKENRPNEGIMFFNIELSPMASPAFE 91
>gi|302830011|ref|XP_002946572.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
gi|300268318|gb|EFJ52499.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
Length = 311
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 18/248 (7%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++ + L+ G+R DGR R ++I G DGS+ V++G+T ++G V ++++P
Sbjct: 25 QYYDRFLAEGVRPDGRPLGRARAVTIGAGAITSADGSALVKIGRTTVLGGVRLEIIRPDE 84
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGR-PSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
P++G L++ E +P + + GR P + ++ L AV SLC+ GK
Sbjct: 85 TAPSQGQLALNVELAPFSSQDYRPGRQPDHVSAVTEKLTSALLTGGDAVQLSSLCIAEGK 144
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL------------EV 180
W +DL++LD G ++D A +AA A+L R P E
Sbjct: 145 AAWRASLDLYVLDADGCVLDTALLAATAALRNTRIPAVRSTREGHYVAVGAGSSGSGGAG 204
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
P + + P+ +T + + +++DPT EE + ++ L+ +G +
Sbjct: 205 GDGGLVAGSPTAVGMGRCPLGLTCCLY--RNYILVDPTAEEERLAACSVSVVLDQHGRLQ 262
Query: 241 AIQKPGGE 248
+ K GG+
Sbjct: 263 GVYKAGGK 270
>gi|221058609|ref|XP_002259950.1| exoribonuclease PH [Plasmodium knowlesi strain H]
gi|193810023|emb|CAQ41217.1| exoribonuclease PH, putative [Plasmodium knowlesi strain H]
Length = 281
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 126/281 (44%), Gaps = 34/281 (12%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++IE +++S IR+DGR YR + I DGSS V + +++ + L+ P
Sbjct: 5 KYIENSINSNIRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPSL 64
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P+EG +++ + S R + +++ + L +D + LC+L K
Sbjct: 65 DAPDEGVINLQID----CPASVAANRIKKDHLQIMSSIIYDLCLKNNIDRKKLCILPSKF 120
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLL-----------------TFRRPECSLGGED 176
VW + I + +L+ GG L+D ++A +L TF +C +
Sbjct: 121 VWGVDISVMVLNAGGGLLDIISMAIYVALKDTVVPVVKPKRKIDESNTFHHTKC---ADY 177
Query: 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
+E++ ++ P ++PI V+ G +++ V D + EE ++ + ++
Sbjct: 178 QIEIV---ENQKTDFPY--ENVPICVSIGEINNK--YVYDMSKVEEELVENIFVVAVTSS 230
Query: 237 GDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
G A K G + + I+ +S+++ + +KI +A+
Sbjct: 231 GKCVAFHKLYGISMEIASILNMTENSSKISHHLFEKINEAI 271
>gi|66801297|ref|XP_629574.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
gi|60462952|gb|EAL61149.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
Length = 293
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 125/268 (46%), Gaps = 18/268 (6%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGRE---DGSSEVQLGQTHIMGFVTGQL-VQPYR 73
F L +R DGR+ + RK +I G DGSS V++G T ++ V ++ +P
Sbjct: 12 FYRKYLVRSVRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSVVCGVRAEVGEKPSI 71
Query: 74 DRPNEGTLS------IFT--EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTES 125
D+ TL+ IF E P+ +F + +PS+ A+ L ++ + +T+
Sbjct: 72 DKSKFSTLNVHENKNIFINIELGPICSNTFSSSKPSDIAMSLCSRLNSLINRLEIPETDY 131
Query: 126 LCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPP 185
GK +W + +D++ LD GN+ DAA ++ +++L + P+ + D+ + P
Sbjct: 132 YFDEEGKALWYLYVDVYCLDYDGNIYDAAVLSIISALKNVKLPKGIIENNDEFYKDLESP 191
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
+ + L I H I ++F + ++ DP+ EE + G + T N ++C +
Sbjct: 192 QRK----LNIQHYLIPLSFSVI--DDYILADPSLDEEKLSSGTINITYNELNEICLLLSS 245
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKI 273
G + ++ + C+ A ++ I I
Sbjct: 246 GTSLISKTNLKTCMEKAKERSTFIIDLI 273
>gi|194694796|gb|ACF81482.1| unknown [Zea mays]
gi|414869689|tpg|DAA48246.1| TPA: hypothetical protein ZEAMMB73_220271 [Zea mays]
Length = 218
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 89 PMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGG 148
P+ P GRP++ A + + ++ L S ++ + LC++ GK W +D++ L+ G
Sbjct: 16 PICSPLVRPGRPTDVAPVISKALEDVLTSSGMLNLKDLCLITGKASWLAYLDIYCLNADG 75
Query: 149 NLVDAANIAALASLLTFRRPECSLG------------GEDDLEVIVHPPEEREPLPLIIH 196
+L DAA I+A+A+ P S+G G++ E++ RE L +
Sbjct: 76 SLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELV-----NREKRKLTLG 130
Query: 197 HLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIM 256
+P+++T E ++ DPT EE+++ +T ++++ + ++QK GG + I
Sbjct: 131 AIPLSLTCALHKDE--ILADPTSEEESIIETYVTVVVDSSDRLVSLQKLGGAVTCMATIK 188
Query: 257 QCLRLASRMASDITKKIKDAVETYNTER 284
+C+ LA + + + D+++ ++
Sbjct: 189 ECISLAKERRRSLREILLDSIKAMEVDQ 216
>gi|156096300|ref|XP_001614184.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148803058|gb|EDL44457.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 281
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 128/291 (43%), Gaps = 36/291 (12%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++IE +++S IR+DGR YR + I DGSS V + +++ + L+ P
Sbjct: 5 KYIENSINSNIRVDGRTLSTYRTIEINKNILVSADGSSSVMNEENNVICGIKLSLLTPSL 64
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D P+EG +++ + S R + +++ + L +D + +C+L
Sbjct: 65 DAPDEGVINLQID----CPASVVANRIKKDHLQIMSSIIYDLCLKNNIDRKKMCILPSTF 120
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLL-----------------TFRRPECSLGGED 176
VW + I++ +L+ GG L+D ++A +L TF +C+
Sbjct: 121 VWGVDINVMVLNAGGGLLDIISMAIYVALKDTVVPVVKPKKKIDESNTFHHTKCA----- 175
Query: 177 DLEV-IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA 235
D +V IV + P ++PI V+ G +++ V D + EE ++ + +
Sbjct: 176 DYQVEIVENQKTNFPY----ENVPICVSIGEINNK--YVYDMSKVEEELVENIFVVAVTS 229
Query: 236 NGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286
+G A K G + + I+ +SR++ + +KI +A+ T L
Sbjct: 230 SGKCVAFHKLYGISMEIASILNMTENSSRISHHLFEKINEAIAKIETRSVL 280
>gi|115947457|ref|XP_794197.2| PREDICTED: exosome complex component RRP42-like, partial
[Strongylocentrotus purpuratus]
Length = 209
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 115 LRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS--- 171
L ++ +D +SLCV+AG+ VW + D+ +L+ GGNL+DA +A A+L R P +
Sbjct: 34 LSNTQMLDYKSLCVIAGQCVWTLYADIVVLECGGNLLDAIALAVKAALYNTRIPLVTVHK 93
Query: 172 -LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMT 230
+ G +D++V +P + + L +LP+ VT S ++D T EEA + +
Sbjct: 94 DMDGTEDIDVSSNP---HDFVTLDTKNLPVLVTVTMVGSGH--IVDATLEEEACSMACIV 148
Query: 231 ATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKD 275
A +N G + + K G + I + L A ++ D+ K ++D
Sbjct: 149 AAVNKEGAIDGMVKKGSGSLTIDSIYKMLTSAKQIGKDLNKSLED 193
>gi|344255178|gb|EGW11282.1| Exosome complex exonuclease RRP42 [Cricetulus griseus]
Length = 226
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P ++P+EG L F + S A P FE + E+ + R +VD SLC+
Sbjct: 4 PKLEKPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLSSLCISP 63
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPE 186
+ W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+ P
Sbjct: 64 REHCWVLCVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDP-- 121
Query: 187 EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ + L + ++P VT V+D T EEA + + ++ + G V ++K G
Sbjct: 122 -YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMRKVG 178
>gi|84998310|ref|XP_953876.1| exosome ribonuclease PH (Rrp42 ) [Theileria annulata]
gi|65304873|emb|CAI73198.1| exosome ribonuclease PH (Rrp42 homologue), putative [Theileria
annulata]
Length = 268
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 27/245 (11%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+++A+SS +R+DGR + L+I GSS+V G + V +V P
Sbjct: 3 FVKSAISSNLRLDGRKFEQLYSLNIIPNISSIAHGSSQVTFGDNIVQTTVNFSIVSPEDS 62
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA-VDTESLCVLAGKL 133
P+EG + + + FE S+ E+ + L A +D +SLC+L G+L
Sbjct: 63 TPDEGII----DLTITGTNIFENSELSQRNYEILCNILYDLEFQHAFLDLKSLCILPGQL 118
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
W IRI ++ GG ++DA +I L+SL+ P+ + D+LE +R L L
Sbjct: 119 CWNIRIHSTVVKRGGCVIDALSIGVLSSLMCSDVPDVEVMFRDELE-----SYQRSNLQL 173
Query: 194 ------------IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
++ P+ + G S L T EE G M+ ++ G +
Sbjct: 174 KLSLDKNKIISQLVERFPLITSVGKVSKNYLW--GMTREEELCSDGTMSVAVDKTGKCLS 231
Query: 242 IQKPG 246
++ G
Sbjct: 232 VKANG 236
>gi|238599743|ref|XP_002394962.1| hypothetical protein MPER_05068 [Moniliophthora perniciosa FA553]
gi|215464853|gb|EEB95892.1| hypothetical protein MPER_05068 [Moniliophthora perniciosa FA553]
Length = 94
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++ EK F+ ++L +R+DGR PFE R F E G+ E LG+T ++ V ++V+P
Sbjct: 7 SIPEKEFLFSSLKQSLRLDGRLPFEMRTPDFIFSAELGTVECALGKTRVLANVDAKMVKP 66
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGR 99
+RP EG ++I +E SPMA +E GR
Sbjct: 67 PPERPFEGLITIHSEISPMASSEYELGR 94
>gi|195583790|ref|XP_002081699.1| GD11151 [Drosophila simulans]
gi|194193708|gb|EDX07284.1| GD11151 [Drosophila simulans]
Length = 281
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 12/205 (5%)
Query: 27 IRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
R DGR+ +YR + ++ G GS+ ++L T I+ V ++ P P G L
Sbjct: 7 FRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPEFGKLEF 66
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F + S A P FE S+ A EL + A + +LC++ G+ W + ID+ I
Sbjct: 67 FVDCSANATPEFEGRGGSDLAQELILSLKNAYESPLAFNYRTLCLIPGQQCWKLYIDILI 126
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLP 199
L+ GGNL DA ++AA A+L + P + G DL + +P + + I +P
Sbjct: 127 LECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTR---IGIETVP 183
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAV 224
+ VT L +DP+ EE
Sbjct: 184 LLVTVCKIGDYVL--VDPSAEEEVC 206
>gi|298711453|emb|CBJ32592.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 239
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ--THIMGFVTGQL 68
+E+ ++ + G+R DGR +YR LS++ G + +GS+ V + T ++ V ++
Sbjct: 14 SEREYVALGVELGMRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEV 73
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
+P + P G + + S P F+ + L ++R ++ +D ++L +
Sbjct: 74 GEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGGLDLDALGI 133
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS-LGGE----DDLEV 180
+ GK W + +D+ +L GNL+DA++ AA +L T R P+ + L GE DD E+
Sbjct: 134 VDGKFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEI 190
>gi|167537668|ref|XP_001750502.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771042|gb|EDQ84716.1| predicted protein [Monosiga brevicollis MX1]
Length = 1499
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 17/224 (7%)
Query: 25 SGIRIDGRNPFEYR--KLSIKFGRE-DGSSEVQLGQTHIMGFVTGQLVQPYRDRPN--EG 79
+G+R DGR E R ++S+ + +GSS V +G+T +M + + P + PN G
Sbjct: 1225 AGVRPDGRELAEPRVTRVSVNVVQSANGSSMVVMGKTSVMASLKAEFANPPLN-PNAASG 1283
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L PM + G PS A L + L V E L + A KLVW + +
Sbjct: 1284 WLVANVTMPPMCSSTITPGPPSTQARALSTFLSDILLRHNVVRPEQLVIKANKLVWCLFL 1343
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRP------ECSLGGEDDLEVIVHPPEEREPLPL 193
D+ +L++ GNL DA +AA A+L T P E GED + + P +R L L
Sbjct: 1344 DVVVLNDDGNLPDAILLAAAAALQTATLPTVESADENEDAGEDTIPTV--DPSQRVALSL 1401
Query: 194 IIHHLPIAVTFGFFSSES-LLVIDPTHHEEAVMVGKMTATLNAN 236
LP+A T + ++ +++DPTH EE + MT + +
Sbjct: 1402 --GQLPLAATMAWLHQDAEEILVDPTHEEENMATACMTVVMQGD 1443
>gi|357436289|ref|XP_003588420.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
gi|355477468|gb|AES58671.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
Length = 180
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR 73
R+ E L+ IR DGR E R SI G +GS+ V++G T ++ + +++ P
Sbjct: 28 RYFERHLAESIRSDGRPLREARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMIPSL 87
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
+ P+EG L+I P+ P GRP+E+ + + + + S +D L ++ GK
Sbjct: 88 ESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDTITSSGMIDLRELSLVGGKA 147
Query: 134 VWAIRIDLHILDNGGNLVD 152
W +D++ LD G+L D
Sbjct: 148 AWMAYLDIYCLDADGSLFD 166
>gi|343426343|emb|CBQ69873.1| related to Exosome complex exonuclease RRP43 [Sporisorium reilianum
SRZ2]
Length = 323
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
++ L + IR DGR +R+ ++ G DGSS V++G T + + ++ P
Sbjct: 41 YLSRFLDASIREDGRALTAFREATLTLGSISTADGSSFVRIGNTSCIAAIKAEVAAPQLS 100
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRP-SESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
R EG L E + F+ G P ES V R++ L S +D E LC+ K
Sbjct: 101 RSREGYLIPNVELPAVCSSKFKPGVPGDESQVLTSRLLAL-LNSSNVLDREQLCIHEAKA 159
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPL 193
VW + +D+ + GN +DAA +AA+A+L + + S + + V +R L
Sbjct: 160 VWCLYLDISFICFDGNAMDAAVLAAVAALSNTKLAKASYDPDTEQ---VRCSSDRT--AL 214
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMT 230
++ LP+A +F F ++ LL DPT E A+ +T
Sbjct: 215 LLQELPLASSFSIFENQHLLS-DPTTFESALSSSHLT 250
>gi|443898173|dbj|GAC75510.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Pseudozyma
antarctica T-34]
Length = 318
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 6/236 (2%)
Query: 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQT 58
D LA T ++ ++ L S R DGR+ +R ++ G DGSS V++G T
Sbjct: 19 DIDLAATTFKRLHPVAYLSRFLDSSAREDGRSLAAFRDATLSLGSISTADGSSFVRIGNT 78
Query: 59 HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES 118
+ V ++ P R +G L E + F+ G P A L + L S
Sbjct: 79 SCIAAVKAEIASPQLSRSRQGYLIPNVELPAVCSSKFKAGAPGPEAQVLTSRLLALLNSS 138
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
+D + LC+ G+ VW + +D+ + GN +DAA +A +A+L P + + ++
Sbjct: 139 NVLDRDQLCIQEGQAVWCLYLDISFICFDGNALDAAALATVAALSNTTLPNATYDPDSEV 198
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
P +R + L + +P A +F F ++ LL DPT E A+ +T L+
Sbjct: 199 VRCSSSPADR--VALQMGSIPFASSFAIFENKHLLS-DPTAFEAALASSHVTIALS 251
>gi|312071046|ref|XP_003138427.1| 3' exoribonuclease [Loa loa]
gi|307766409|gb|EFO25643.1| 3' exoribonuclease [Loa loa]
Length = 307
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 15/222 (6%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG 66
RL+ EK FI G+R DGR+PF+YR + ++ G +GS+ V++G T ++ V
Sbjct: 4 RLSEAEKVFIIHGAQEGLRADGRSPFDYRPVIVQTGVLATTNGSARVRIGSTDLLIGVKA 63
Query: 67 QLVQP-----YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
+L+ YR+R L+ F + S A P F E A EL +D + +
Sbjct: 64 ELISVENIALYRNR-----LNFFVDCSANATPLFAGRGGEEFADELSAALDAAYDNNYVL 118
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
+L+ VW + +D+ +L GN++DAA + A+L + + D+ +
Sbjct: 119 PDLKKLILSPMHVWKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISKVIVRPADEGKYT 178
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEA 223
+ P++ L +P+ V+ S ++D + EEA
Sbjct: 179 IDLPDDNTVWKLNTSRVPLFVSVNRLGSAK--IVDNSLAEEA 218
>gi|294877908|ref|XP_002768187.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
gi|239870384|gb|EER00905.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
Length = 291
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 20/224 (8%)
Query: 14 NEKRFIETALSSGIRIDGRN--PFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+ + F+ L++G+R DGR PF RK+S +G S V++G+ V L +P
Sbjct: 10 DPRGFLLKHLNAGVRPDGRADPPFSSRKISAT--SSEGKSTVRIGENCATCVVHPLLGEP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES--AVELGRIVDRGLRESRAVDTESLCVL 129
P +G L++ + P AD S + S A ++G I+ G D LCV+
Sbjct: 68 LSSMPRQGRLTVSVDLPPAADQSRRQAQQVSSWVATKVGSILQMG---PEVFDPSQLCVV 124
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-------GEDDLEVIV 182
G++VW + + + +L G+L+D AA+ +L + + P G + ++ I
Sbjct: 125 EGQVVWQLHLVITVLSVDGSLMDVCMRAAVEALQSVQLPALFAGEALSDRAADVNIASIT 184
Query: 183 HPPEEREPLP---LIIHHLPIAVTFGFFSSE-SLLVIDPTHHEE 222
P RE +++ +P + T S + + L+ DPT EE
Sbjct: 185 TAPMGRELTQAHGVVMGSIPGSTTLALLSDDKTWLLPDPTASEE 228
>gi|413934285|gb|AFW68836.1| hypothetical protein ZEAMMB73_183636 [Zea mays]
Length = 252
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
+PLPL IHH+PI VTF +F +++V+DPT+ EEAVM G+MTA +N+NG +K
Sbjct: 148 DPLPLTIHHMPIPVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGMFVPFRK 203
>gi|342181316|emb|CCC90795.1| putative ribosomal RNA processing protein 45 [Trypanosoma
congolense IL3000]
Length = 171
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR-EDGSSEVQLGQTHIMGFVTGQLV 69
L E F ++A +G+R D R + R++S++F V+ G T + G V LV
Sbjct: 15 LAQREVEFTKSAWLAGLRPDQRTAQQLREVSVEFPLLSRDLVVVRCGGTVVTGAVASALV 74
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVE---LGRIVDRGLRESRAVDTESL 126
+P RP G L+ FS + E P+ SA E L +DR +R +DT L
Sbjct: 75 EPVPQRPKHGLLN----FS-VRRLHTERDNPALSAAEERDLASFIDRLVRVGGVIDTAGL 129
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIA 157
CVL G+LVW+I +D+ ++++ GN D A A
Sbjct: 130 CVLPGRLVWSITVDVTVMNDEGNCGDVAVWA 160
>gi|388856078|emb|CCF50258.1| related to Exosome complex exonuclease RRP43 [Ustilago hordei]
Length = 339
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 6/222 (2%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
++ L S +R DGR+ +R ++ G DGS V++G+T + + ++ P
Sbjct: 54 YLSRFLDSSVREDGRSLSSFRDATLTLGSISTADGSCFVRIGKTSCIAAIKAEVAPPQLS 113
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RPN+G L E + F+ G P E A L + L S +D E L + + K V
Sbjct: 114 RPNDGYLIPNVELPAVCSSKFKPGAPGEEAQVLTSRLLALLNSSNLLDREQLRIESAKAV 173
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
W + +D+ + GN +DAA +AA+A+L + + + + P +R + L
Sbjct: 174 WCLYLDISFICFDGNAMDAAVLAAVAALSDTKLSKACYDADTEQVRSSSSPADR--IRLQ 231
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN 236
+ +P A +F F + LL DPT E A+ +T ++ N
Sbjct: 232 LDDMPFASSFAIFENTHLLS-DPTAFEAALASSHLTIAISIN 272
>gi|225718446|gb|ACO15069.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 250
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 25/244 (10%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK FI + IR+DGR + R + ++ +GS+ VQL T ++ V +L +
Sbjct: 10 EKNFILEGVKENIRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAELCE- 68
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVLA 130
+P G L + + S A P FE GR E A+E+ + +++ + L V
Sbjct: 69 --HKPG-GGLEFYVDCSANASPVFE-GRGGEDLALEIASTLSSSYSDNKLFNRSILNVFQ 124
Query: 131 GKLVWAIRIDLHILD-NGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPP 185
+ W + +D+ IL+ GGNL D A+ A A+L + P+ + GG ++E+ P
Sbjct: 125 NRYAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGVPEIELSEDPD 184
Query: 186 EEREPLPLIIHHLPIAVTF---GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
E L + + P+ VT G F + D + +EEA M ++ +G + ++
Sbjct: 185 ---ECFRLDVSNAPVLVTLNRIGHFC-----IADASPNEEACSSAAMVIAVSPSGRISSL 236
Query: 243 QKPG 246
+K G
Sbjct: 237 RKIG 240
>gi|388582213|gb|EIM22518.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 422
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 14/247 (5%)
Query: 6 ANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRE------DGSSEVQLGQTH 59
A T+R + + ++ L + +R+DGR E+R SI E +GS+ V+LG T
Sbjct: 151 AATYR-RLRPREYLNRFLENDLRMDGRRLDEFRSTSINQENEGSIDTANGSAVVRLGNTT 209
Query: 60 IMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESR 119
++ V + P +R G + + +P+++ ++ G PSE A L ++ L S
Sbjct: 210 MIAGVKLKTALPDPNR-EAGYVVPNIDLNPISNSKYKPGPPSEEAQVLSSRINDVLLSSG 268
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
++ + L + GK VW + ID+ ++ GN DAA IA +A+L R P ++D
Sbjct: 269 VLNQKDLTIEQGKAVWVVYIDVVCINFDGNAFDAALIAIVAALRNTRLPVTRYDFDNDR- 327
Query: 180 VIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239
++ PEE +PL +P +FG F + LV D E+++ ++T +N +G +
Sbjct: 328 -VLANPEESTSVPLTKTIIP--TSFGLFDGK--LVTDLNDFEQSLAHSRLTVVINEDGTL 382
Query: 240 CAIQKPG 246
+ G
Sbjct: 383 AHMSSQG 389
>gi|124513540|ref|XP_001350126.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
gi|23615543|emb|CAD52535.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
Length = 278
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 121/274 (44%), Gaps = 18/274 (6%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
+IE +++ IRIDGR YR + I DGSS V + +++ + L+ P
Sbjct: 5 NYIEDSINCNIRIDGRTLLTYRSIEINKNILVSGDGSSSVINEENNVICGIKLSLITPDV 64
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
D +EG +++ + S R + ++ + L ++ + LC+L GK
Sbjct: 65 DTYDEGNVNLQID----CPASVAANRIKKDHLQTMTTIIYNLCIKNNINKKILCILPGKF 120
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASL----LTFRRPECSLGGEDDLEVIVHPPE--- 186
W++ I++ +L+ GG L+D +IA +L +P+ + E+ I +
Sbjct: 121 AWSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKPKKEIEEENTFHEISNKDYQLE 180
Query: 187 --EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244
E E + ++PI ++ G +++ + D + EE ++ + + G A K
Sbjct: 181 IVENEHVNFPYENIPICISIGEINNKYIY--DMSKVEEELVQNIFVVAITSKGKCVAFHK 238
Query: 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278
G + S I+ +S+++ + KI A++
Sbjct: 239 LYGISMEISSILNITENSSKISHTLFDKIHQALD 272
>gi|327287178|ref|XP_003228306.1| PREDICTED: exosome complex exonuclease RRP42-like [Anolis
carolinensis]
Length = 148
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LCQAEKVYIIHGVQEDLRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P DRPNEG L F + S A P FE E E+ + R +VD + LC
Sbjct: 66 MGVPKLDRPNEGFLEFFVDCSANATPEFEGRGGEELGTEIANTLYRIFDNESSVDLKLLC 125
Query: 128 VLAGKLVWAIRIDL 141
+ + W + +D+
Sbjct: 126 ISPREHCWVLYVDV 139
>gi|339244011|ref|XP_003377931.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
gi|316973204|gb|EFV56824.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
Length = 280
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 27 IRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
IR DGR ++R ++ D S+ ++G T + + ++++ P+ G +
Sbjct: 28 IRYDGRKTNQFRNAAVHRNMITTADSSAVARIGGTAAICGINLEIMENDTLIPSPGLVVN 87
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
SP S++ + ++ + + + L E V+++SL + G+L W I D +
Sbjct: 88 IESVSPTIVVSWQ------NEIDKTKCILKSLIEKNIVNSKSLEIFDGELFWVIYCDFVV 141
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSLGGED---DLEVIVHPPEEREPLPLIIHHLPI 200
LD G +++ +A LA+L R P + ED +L+ I E P+ L + P+
Sbjct: 142 LDCAGGILEVCLVALLAALQELRFPVVKVLHEDFKINLKNIKVDTAETSPV-LFPNVYPV 200
Query: 201 AVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
A +F F E +L+ DPT E ++ T + A +C + K GG L
Sbjct: 201 ACSFLKFGDE-ILICDPTDEETKLIGDAFTIIVGAQKTLCGLFKTGGAASL 250
>gi|225718102|gb|ACO14897.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 289
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK I + IR+DGR + R + ++ +GS+ VQL T ++ V +L +
Sbjct: 10 EKNLILEGIKENIRVDGRQRKDVRPMILETDIITHANGSARVQLSNTDVLVGVKAELCE- 68
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCVLA 130
+P G L + + S A P FE GR E A+E+ +++ + L VL
Sbjct: 69 --HKPG-GGLEFYVDCSANASPVFE-GRGGEDLALEIASTPSSSYSDNKLFNRSILNVLQ 124
Query: 131 GKLVWAIRIDLHILD-NGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPP 185
+ W + +D+ IL+ GGNL D A+ A A+L + P+ + GG ++E+ P
Sbjct: 125 NRYAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIPKVHIVDVDGGVPEIELSEDPD 184
Query: 186 EEREPLPLIIHHLPIAVTF---GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242
E L + + P+ VT G F + D + +EEA M ++ +G + ++
Sbjct: 185 ---ECFRLDVSNAPVLVTLNRIGHFC-----IADASPNEEACSSAAMVIAVSPSGRISSL 236
Query: 243 QKPG 246
+K G
Sbjct: 237 RKIG 240
>gi|157823529|ref|NP_001099902.1| exosome complex exonuclease RRP43 [Rattus norvegicus]
gi|149064772|gb|EDM14923.1| exosome component 8 (predicted), isoform CRA_c [Rattus norvegicus]
Length = 140
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GN++DA A LA+L + PE ++ E L + ++ L + P+A +F
Sbjct: 7 DYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLKKKSYLNVRANPVATSF 62
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
F ++LL++DPT EE + G +T ++ G +C + KPGG G+ + + C+ A
Sbjct: 63 AVFD-DTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVT 121
Query: 265 MASDITKKIKDAVET 279
+++K + + +++
Sbjct: 122 RHKEVSKLLDEVIQS 136
>gi|170577726|ref|XP_001894115.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158599437|gb|EDP37044.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 306
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 119/265 (44%), Gaps = 26/265 (9%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG 66
+L+ EK FI G+R DGR P +YR + ++ G +GS+ VQ+G T ++ V
Sbjct: 4 QLSEAEKVFIIHGAQEGLRADGRGPLDYRPIIVQTGVLATTNGSARVQIGSTDLLIGVKA 63
Query: 67 QLVQP----YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD 122
+L+ YR+R L+ F + S A P F E A EL +D + +
Sbjct: 64 ELISVDTAVYRNR-----LNFFVDCSANATPLFAGRGGEEFADELSAALDAAYDNNYVLP 118
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV 182
+L+ W + +D+ +L GN++DAA + A+L + + D+ + +
Sbjct: 119 DLKKLILSPMHAWKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISKVIVRPADEGKYTI 178
Query: 183 HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV--------MVGKMTATLN 234
P++ L +P+ V+ + ++D + EEA + + + +N
Sbjct: 179 DLPDDNTVWKLDTSRVPLFVSVNRLGTAK--IVDNSLTEEACTRTSVWIAVAPQFVSDIN 236
Query: 235 AN-GDVCAIQKPGGEGVLQSVIMQC 258
N + CA+++ +G + + + QC
Sbjct: 237 HNQNNQCAVKR---DGSIITFMRQC 258
>gi|413935084|gb|AFW69635.1| hypothetical protein ZEAMMB73_958064 [Zea mays]
Length = 121
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
L+ EK FI ++ +R DGR ++R LS++ G + +GS+ V+LG T I+ V +
Sbjct: 4 LSEGEKHFIRGGIAQDVRTDGRRRLQFRSLSVQTGVIPQANGSARVRLGATEIIASVKAE 63
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSE 102
L +P P++G ++IF + SP A+P FE GR SE
Sbjct: 64 LGKPSILHPDKGKVAIFVDCSPTAEPLFE-GRGSE 97
>gi|300123363|emb|CBK24636.2| unnamed protein product [Blastocystis hominis]
Length = 304
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 115/247 (46%), Gaps = 12/247 (4%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
+ K F L + +R DGR + R + I +G DGSS V++G+T ++ +
Sbjct: 30 IQPKAFYGQYLENEVRPDGRGIDDARGILISYGHIGTADGSSLVRIGETGVICGLKLSFD 89
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+G+L + S + + F G + + +++ + + + +D L
Sbjct: 90 PAKESSDTKGSLDVNIVLSSLCNADFFYGEQDKQSKYYAQVL-KQIFQRYVLDLNELYSA 148
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
V + + +D G+++DA +A L++LLT R P+ SL + E++ +
Sbjct: 149 EASTVICVHASIICIDYEGSILDACCLALLSALLTLRVPKLSL---KEKELVF---DYDA 202
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
PL I P+AVTFG +S V+DP EE ++ +T L N +I KPGG+
Sbjct: 203 AYPLTILDYPVAVTFGLYSE--FEVMDPDAFEEGLLDDTVTVVLGGNNKTISIIKPGGKR 260
Query: 250 VLQSVIM 256
+ S++M
Sbjct: 261 ISDSLVM 267
>gi|321250323|ref|XP_003191768.1| ribosomal RNA-processing protein 43 [Cryptococcus gattii WM276]
gi|317458235|gb|ADV19981.1| Ribosomal RNA-processing protein 43, putative [Cryptococcus gattii
WM276]
Length = 303
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 23/209 (11%)
Query: 18 FIETALSSGIRIDGRNPFE----------------YRKLSIKFGR---EDGSSEVQLGQT 58
++ LSSG R DGR +R++SI G GS+ V++G T
Sbjct: 37 YLSRFLSSGYRPDGRPILSSSSSQPTASASAADDIWRQVSINTGSISTAHGSALVRMGDT 96
Query: 59 HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES 118
++ V ++ +P + P EG + + ++ P F+ G P + A ++ L S
Sbjct: 97 TMVCGVKAEIGEPDTETPGEGFVVPNIDLPALSSPRFKPGPPGDEAQTYSNWLNELLVSS 156
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
+ + SL + GK W + ID+ ++ GN DAA +A +A+L R P+ +DD
Sbjct: 157 KTIPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLPKAVY--DDDT 214
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFF 207
+ + ER PL L +P++ +FG F
Sbjct: 215 QRAICSRTERYPLKL--GRMPLSCSFGIF 241
>gi|58259313|ref|XP_567069.1| Opa-interacting protein OIP2 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134107613|ref|XP_777691.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260385|gb|EAL23044.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223206|gb|AAW41250.1| Opa-interacting protein OIP2, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 297
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 18 FIETALSSGIRIDGRNPFE------------------YRKLSIKFGR---EDGSSEVQLG 56
++ LSSG R DGR +R++SI G GS+ V++G
Sbjct: 36 YLSRFLSSGYRPDGRPILPSSSFQSTASASASAADDVWRQVSINTGSISTAHGSALVRMG 95
Query: 57 QTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLR 116
T ++ V ++ +P + P EG + + ++ P F+ G P + A + L
Sbjct: 96 DTTMVCGVKAEVGEPDAEAPGEGFVVPNIDLPALSSPKFKPGPPGDEAQTYSNWLYELLV 155
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176
S+ + SL + GK W + ID+ ++ GN DAA +A +A+L R P+ +D
Sbjct: 156 SSKTIPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLPKAVY--DD 213
Query: 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFF 207
D + + ER PL L +P+A +FG F
Sbjct: 214 DTQRTICSRTERYPLSL--GRMPLACSFGIF 242
>gi|390344513|ref|XP_791327.3| PREDICTED: exosome complex component RRP42-like [Strongylocentrotus
purpuratus]
Length = 150
Score = 66.2 bits (160), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
V ++ P P+ G + F +FS A P F E A E+ ++ + + +D
Sbjct: 16 VKAEMGPPNPLNPSRGGIEFFVDFSANASPKFAGRGGDELAAEISNMLGLVYKNKKMLDY 75
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFR 166
+SLCV+AG+ VW + D+ +L+ GGNL+DA +A A+L R
Sbjct: 76 KSLCVIAGQCVWTLYADIVVLECGGNLLDAIALAVKAALYNTR 118
>gi|296081160|emb|CBI18186.3| unnamed protein product [Vitis vinifera]
Length = 53
Score = 65.9 bits (159), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/44 (65%), Positives = 39/44 (88%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKF 44
M+ RLA+T+R+TVNEK+FIE AL S +RIDGR PF++R++SIKF
Sbjct: 1 MEQRLASTFRMTVNEKKFIEKALLSDLRIDGRRPFDFRRISIKF 44
>gi|452847222|gb|EME49154.1| hypothetical protein DOTSEDRAFT_142863 [Dothistroma septosporum
NZE10]
Length = 338
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 52/299 (17%)
Query: 27 IRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV-------QPYRDRP 76
+R +GR FE R+ ++ G +GS+ V++G T I+ V G+++ P+ D P
Sbjct: 38 VRPNGRQLFESRQPAVNTGSLTHSNGSAVVRVGDTAIVCGVRGEILLASDIPHAPHED-P 96
Query: 77 NE-------GTLSIFTEFSPMADPSFETGRP-SESAVELGRIVDRGLRESRAVDTESLCV 128
E G L E S P+ G P S A L V L++SR +D SL +
Sbjct: 97 EEQDLIEELGLLVPNVELSTGCSPAHLPGNPPSTLAQSLSYRVCSLLQDSRCIDASSLRI 156
Query: 129 -----------------LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171
+ K W + ID+ L GN DAA +A A+L P+
Sbjct: 157 EYTEPDTGDDDAADESRVVIKAFWTLYIDVLCLALDGNAFDAAWLAITAALRDTTLPKA- 215
Query: 172 LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS----------ESLLVIDPTHHE 221
+ D E ++ P + L ++ +P TF F++ +S +++DP E
Sbjct: 216 -WWDQDREGVLCSPLLSDASALTLNEIPSVSTFAVFTTASPLQRPENAQSWVLVDPDAFE 274
Query: 222 EAVMVGKMTATLNANGD----VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDA 276
E + +T + G + ++K GG + I C+ ASR +D +K++
Sbjct: 275 EDLCDEMLTIAVRKTGSGGTTLLKVEKSGGSFIGTLAIRDCVEAASRRLADTELALKNS 333
>gi|324510452|gb|ADY44370.1| Exosome complex exonuclease RRP42 [Ascaris suum]
Length = 303
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ 57
MD L++ EK FI G+R DGR+ F+YR + ++ G +GS+ V+L
Sbjct: 1 MDIHLSDA------EKVFIIHGAEEGMRADGRSLFDYRPIIVETGVLATTNGSARVRLAS 54
Query: 58 THIMGFVTGQL-----VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIV 111
T ++ V +L + YR+R N F + S A P F GR E AVE+ +
Sbjct: 55 TDLLIGVKAELTVVEDFEHYRNRIN-----FFVDCSANATPLF-VGRGGEDLAVEVTSAL 108
Query: 112 DRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171
D + +L+ W + +D+ IL+ GGN++DAA I A+L R E
Sbjct: 109 DVAYDNPYVLPDLKKLILSPMHAWKLYVDIVILECGGNILDAAGIGVKAAL---RNTEIC 165
Query: 172 LGGEDDLEVIVHPPEE 187
VIV P +E
Sbjct: 166 -------NVIVRPADE 174
>gi|320166868|gb|EFW43767.1| opa-interacting protein 2 [Capsaspora owczarzaki ATCC 30864]
Length = 269
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
VD LC+ G+L W + +D LD+ GN DAA +A + +L P +L +
Sbjct: 105 VDLNELCITRGELCWCLYVDAVCLDDAGNSTDAALLAIVGALHALVLPAVTLDAASG-KP 163
Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA---NG 237
+P L L P A TF F + + DPT EEA+ G +T + N
Sbjct: 164 GFNPSGNSTQLTL--PATPFAATFSLFDGNAFTLADPTAEEEAMQSGAVTIVADVSSENP 221
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLA 262
+ + KPGG + + + QC+ A
Sbjct: 222 TLWTVHKPGGTPLSATALRQCISQA 246
>gi|452823808|gb|EME30815.1| exosome complex component RRP43 [Galdieria sulphuraria]
Length = 287
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 21/261 (8%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG----REDGSSEVQLGQTHIMGFVTGQL 68
V K F + L IR DGR EYR ++++ G DGS+ +G+T + + ++
Sbjct: 12 VQPKEFYKGFLRRSIRPDGRKLSEYRDITLRKGPLVTTVDGSANASIGRTVALIGIQPKV 71
Query: 69 VQPYRDRPNEGT------LSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD 122
++ + S+ EF + +GR E A+ + ++ L + ++
Sbjct: 72 IEWKETKKGSARSIVGQHCSLQVEFPSVCHRDIRSGRTLEEALLVKESLENVLEQ--ILE 129
Query: 123 TESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIV 182
+S C++ K W ++I + L GN+++ +A +LL + P DL + +
Sbjct: 130 RDSFCIVPDKFYWHLQITAYCLSLDGNVIETFLLALYGALLDLQLPVVRASTSGDL-LTL 188
Query: 183 HPPEEREPLPL-IIHHLPIAVTFGFFS---SESLLVIDPTHHEEAVMVGKMTATLNANGD 238
P + + LP+ + P V G F SE V+D + EE M + + GD
Sbjct: 189 DPNQPKVTLPMKKLEDWPWVVPIGLFWNGPSEYYAVLDLSEEEENNMSSIVWIWNSQRGD 248
Query: 239 VCAIQK----PGGEGVLQSVI 255
AI K P +LQ V+
Sbjct: 249 KLAISKQKVGPLSVNILQEVL 269
>gi|156086782|ref|XP_001610798.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798051|gb|EDO07230.1| conserved hypothetical protein [Babesia bovis]
Length = 267
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 18 FIETALSSGIRIDGR----NPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYR 73
FI AL++ R+DGR NP + ++ G GS++V L T ++ + + P
Sbjct: 3 FIRNALAANCRLDGRRLDDNPKILIEPNVSTGAH-GSAKVILDDTVVITTIMFHVTSPNT 61
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVE-LGRIVDRGLRESRAVDTESLCVLAGK 132
+ P EG + I T SP + E S+ E + I++ + + + LC+L+G+
Sbjct: 62 NSPEEGNVEI-TLGSPF---TLEDSDISQKRDERMAHILEMLQFHKQLFNRKLLCILSGQ 117
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
VW +RI +L GG ++DA ++A + ++LT P +D+LE
Sbjct: 118 YVWTMRIHTTVLQRGGGVMDAVSVAVICAMLTVSVPNIRGVIKDELE 164
>gi|71022771|ref|XP_761615.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
gi|46101168|gb|EAK86401.1| hypothetical protein UM05468.1 [Ustilago maydis 521]
Length = 332
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 100/252 (39%), Gaps = 39/252 (15%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
++ L + IR DGR +R +I G DGSS V++G T + + ++ P
Sbjct: 21 YLSRFLDASIREDGRPLAAFRDATITLGSISTADGSSFVRIGNTSCIAAIKAEVATPQLS 80
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
RP EG L E + F+ G P + A L + L S +D + LC+ V
Sbjct: 81 RPREGYLIPNVELPAVCSSKFKPGAPGDEAQVLTSRLLALLNSSNLLDRQLLCIQDAIAV 140
Query: 135 WAIRIDLHILDNGGNLVDA-----------ANIAALASLLTFRRPECSLGGEDDLEVIVH 183
W + +D+ + GN +DA + A L+ RP SL +++
Sbjct: 141 WCLYLDISFICFDGNAMDAAVLAAVSALSDSKFAIHTYTLSHSRPS-SLTD----ALVLT 195
Query: 184 PPEEREPLP-------------------LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAV 224
P + LP L + H+P A +F F ++ LL DPT E A+
Sbjct: 196 PTAKTAKLPAATYDPDTEQVRCSSSRTALHLEHVPFASSFSIFENQYLLS-DPTAFESAL 254
Query: 225 MVGKMTATLNAN 236
T + N
Sbjct: 255 SSSHATVAVLLN 266
>gi|401406019|ref|XP_003882459.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
gi|325116874|emb|CBZ52427.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
Length = 294
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 39/287 (13%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQ 67
L E ++E ++ +R DGR + R + + SS V+ + ++ V+ Q
Sbjct: 19 LCAAELLYLEDGVACNVREDGRACIDVRPSQVDTFALPKCSASSIVRSSENTVLCGVSMQ 78
Query: 68 LVQPYRDRPNEGTLSIFTEFSPM---------ADPSFETGRPSESAVELGRIVDRGLRES 118
L +P + P+EG + + + S A S G S S + D L
Sbjct: 79 LARPT-NAPDEGEVFVTVDCSAALGVDGARGAAFDSVGIGEGSSSTSLQALVGDMVLS-- 135
Query: 119 RAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDL 178
+VD + LC++ GKL+W + +D +L GG L+DA +++ A+L R + G
Sbjct: 136 -SVDKKKLCLVPGKLMWKVFVDCMVLKAGGCLLDAVSLSVHAAL----RTTTEVAG---- 186
Query: 179 EVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGD 238
EP P +PI VT G ++ V D T +EE+ G++ ++
Sbjct: 187 ----------EPFP--AEDVPIIVTVGEIANR--YVWDMTSNEESACTGRLLVAVSPREH 232
Query: 239 VCA-IQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284
C IQK G V S + + + R+ +I +++ V + T++
Sbjct: 233 KCVGIQKLGASLVDISTLPTVMVNSQRVCREIFERLDRQVASQKTKK 279
>gi|62733253|gb|AAX95370.1| 3' exoribonuclease family, domain 1, putative [Oryza sativa
Japonica Group]
Length = 185
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +R D R P E R ++ GS+ V+LG T ++ + +++ P +
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLV 134
P+EG++++ P+ P GRP+E A + + ++ L S ++ + LC+++GK
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKAS 149
Query: 135 W 135
W
Sbjct: 150 W 150
>gi|90085152|dbj|BAE91317.1| unnamed protein product [Macaca fascicularis]
Length = 250
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 198 LPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQ 257
+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +L+ +++
Sbjct: 1 MPICVSFTFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLR 60
Query: 258 CLRLASRMASDITKKIKDAVE 278
C ++A ++IT+ I A+E
Sbjct: 61 CSKIAGVKVAEITELILKALE 81
>gi|397565050|gb|EJK44452.1| hypothetical protein THAOC_37004 [Thalassiosira oceanica]
Length = 344
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 112/287 (39%), Gaps = 50/287 (17%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRE-------------DGSSEVQL--G 56
T E ++ + +RIDGR+ EYR ++ G+ +GSS V L
Sbjct: 3 TSAEASYVVESCLEDLRIDGRSRNEYRPYTVTNGQSSTTAVQAPSFILSNGSSRVHLPGS 62
Query: 57 QTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFS--------------PMADPSFETGRPSE 102
T ++ V LV P +P+EG + + + S A + + E
Sbjct: 63 TTEVVCSVKADLVHPSPSKPSEGMIGLNVDLSLCGGGGSVIGVSSSVGAAGQSQRRQQRE 122
Query: 103 SAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASL 162
++ ++ R L A++ E L V GK VW + +DL IL G ++D ++IA +L
Sbjct: 123 EESQIASLLQR-LVLPHALNYEQLAVWPGKYVWRLAVDLVILRCDGCVLDTSSIALREAL 181
Query: 163 LTFRRPEC--------SLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS----- 209
+ P+ S G +++V + P P+ VT S
Sbjct: 182 RNTKLPKVQAVMEGKESNEGSSKNDLVVDGDFSKARSPAGADECPLVVTVSVLSEPLSTT 241
Query: 210 -------ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
S+ +ID EEA ++ + + G +C + GG G
Sbjct: 242 EGEPKRRRSVTIIDARTEEEACASSRICVSADPTGMICGVHTVGGSG 288
>gi|453088579|gb|EMF16619.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 331
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 117/283 (41%), Gaps = 50/283 (17%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV------QPYRDRPNE 78
R GR+P E+RK ++ G +GS+ V++G T I+ V +++ +P D +
Sbjct: 37 RPSGRSPSEFRKPTVNTGSLSHSNGSALVRVGDTAIVCGVRAEILLASDVAKPPSDEAED 96
Query: 79 -------GTLSIFTEFSPMADPSFETGRPSESAVE-LGRIVDRGLRESRAVDTESLCV-- 128
G L E S P+ G P S + L + L +S +V+ + L +
Sbjct: 97 IDIIEQLGLLVPNLELSTGCSPAHMPGNPPSSVAQSLSYRISSLLNDSGSVNLDDLRITY 156
Query: 129 ---------------LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG 173
+ K W + +D+ L GN +DAA +A A+L R P
Sbjct: 157 TQPAAEDDGLGEPGQVVTKAYWTLYVDILCLALDGNALDAAWLAVYAALRDTRLPGAHW- 215
Query: 174 GEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES----------LLVIDPTHHEEA 223
+ D E +V P + L I LPI TF F++ S ++ DP EE
Sbjct: 216 -DADRESVVCSPLALDEKRLQIRDLPIVSTFAIFTTASPLKLSTNPQNWILADPDTFEEE 274
Query: 224 VMVGKMTATLNANGD----VCAIQKPGGEGVLQSVIMQCLRLA 262
+ M+ L +G+ + ++ GG + + + CL+LA
Sbjct: 275 LCNEVMSVVLQPSGEHGRLISRLESSGGASIDRQTMYTCLQLA 317
>gi|255086427|ref|XP_002509180.1| predicted protein [Micromonas sp. RCC299]
gi|226524458|gb|ACO70438.1| predicted protein [Micromonas sp. RCC299]
Length = 243
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 102/237 (43%), Gaps = 47/237 (19%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLG-----QTHIMGFVTG 66
E+ +I + +R DGR +YR+++I G + GS+ V+LG T ++ V
Sbjct: 7 EREYIVGGVVDDLRNDGRGRLDYRQITIDLGVVPQSSGSARVRLGIIPGETTDVIVAVKA 66
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDRGL---------- 115
+ P +D P G + E S +AD + GR E+ VEL R ++R L
Sbjct: 67 DIGTPPKDNPTHGRIQCAVELSAIADVDY-MGRGGETLGVELARALERSLTGQTTGGMGS 125
Query: 116 -------------RESR-----AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIA 157
R S+ A+D +L + GK W ++ D +L + G+++DA +IA
Sbjct: 126 LADAVAGERGADARVSKHGPGAALDMSTLGIQKGKTCWLLQCDGVVLTSDGSVLDALSIA 185
Query: 158 ALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLV 214
+L + P+ + V P+ +P L + P A + S L+V
Sbjct: 186 TKCALADAKIPKVT---------AVAGPDADDPAELELDDDPAACSKLDVSGVPLIV 233
>gi|398398730|ref|XP_003852822.1| hypothetical protein MYCGRDRAFT_57534 [Zymoseptoria tritici IPO323]
gi|339472704|gb|EGP87798.1| hypothetical protein MYCGRDRAFT_57534 [Zymoseptoria tritici IPO323]
Length = 331
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 50/293 (17%)
Query: 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV-------QPYRD 74
S +R +GR P E R+ +I G +GS+ V++G T ++ V G+++ P D
Sbjct: 35 SSVRPNGRKPEESRQPTINTGSLTHSNGSAVVRMGDTAVVCGVRGEILLTSDIPHPPGED 94
Query: 75 RPNE------GTLSIFTEFSPMADPSFETGR-PSESAVELGRIVDRGLRESRAVDTESLC 127
++ G + E S P G PS A L + L SR + L
Sbjct: 95 TADDDLVERLGLVIPNVELSTGCSPDHLPGNAPSSLAQALSYRILSLLHTSRTLCPSDLR 154
Query: 128 V-----------------LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC 170
+ + K WA+ ID+ +L GN DAA IA +A+L P+
Sbjct: 155 IQYTEPETEDDIPDQEEKIVTKAYWALYIDILVLALDGNAFDAAWIAVMAALQDTTLPQA 214
Query: 171 SLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS----------ESLLVIDPTHH 220
+ D E+++ P L + +PI +F FS+ +S ++ DP
Sbjct: 215 --WWDADREMVLCSPLISGSHQLSLRRIPITSSFAVFSTASPLKKREDAQSWVLADPDAF 272
Query: 221 EEA----VMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
EE + +T ++ + ++K GG V V+ QC+++A+ S I
Sbjct: 273 EEGACEETLTVVLTPAISGTRGILRVEKKGGRLVSSEVMEQCIKVAASSCSKI 325
>gi|255075205|ref|XP_002501277.1| predicted protein [Micromonas sp. RCC299]
gi|226516541|gb|ACO62535.1| predicted protein [Micromonas sp. RCC299]
Length = 222
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
M V + QP D P+ G L + EF PM S GRP++ A + R ++ L +S A
Sbjct: 1 MAAVKLEACQPDPDAPDRGFLDVVVEFPPMCSASTRPGRPNDDAHFVARRIEDALLDSAA 60
Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNL 150
+D L + G W I +D++ LD+ G++
Sbjct: 61 IDKRKLTIKEGLWAWKICLDVYCLDHDGSM 90
>gi|428673125|gb|EKX74038.1| exosome complex exonuclease rrp42, putative [Babesia equi]
Length = 282
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
FI++ ++ RIDGR E K+S+ GSS+V L + V + P
Sbjct: 3 FIKSGIALNHRIDGRRLDEQAKISVIPNISSNSHGSSQVFLNDNIVQTTVNFSIASPDHS 62
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESAVE-LGRIVDRGLRESRAVDTESLCVLAGKL 133
+EG E + FE+ ++ E +G I++ + +D + LC++ K
Sbjct: 63 ALDEG----MVEVTASGAYIFESDESAQREDEGIGNIIEALQFQKNFIDKKILCIMPNKF 118
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLE 179
VW ++I IL GG+L+DA +I + +L R P ++ +D++E
Sbjct: 119 VWNLKIHTTILQRGGSLLDAISIGIVTALRCSRLPSVAVMLKDEIE 164
>gi|424819347|ref|ZP_18244456.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
gi|326422439|gb|EGD71838.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
Length = 156
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 35/162 (21%)
Query: 90 MADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN 149
MADPS DRG+RES +D L + GK V + +D+ L+N GN
Sbjct: 1 MADPS-----------------DRGIRESNLIDLTKLVIEEGKTVSFVYVDIVCLNNEGN 43
Query: 150 LVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS 209
L DAANIAAL ++L + + EE LP+ L I+ TF +
Sbjct: 44 LFDAANIAALRAILNTKYK-------------IEGKEETFTLPIDKSKLAISHTFTKING 90
Query: 210 ESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
+ DP+ EE + T L+ + ++QK GG+G+
Sbjct: 91 N--IFFDPSAEEEKTADARFTIGLSEK--INSLQK-GGDGMF 127
>gi|148677124|gb|EDL09071.1| mCG23310, isoform CRA_a [Mus musculus]
Length = 213
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 88 SPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG 147
S A P FE + E+ + R +VD SLC+ + W + +D+ +L+ G
Sbjct: 8 SANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLCISPREHCWVLYVDVLLLECG 67
Query: 148 GNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLPIAVT 203
GNL DA +IA A+L R P + G D+E+ P + + L + ++P VT
Sbjct: 68 GNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDDP---YDCIRLSVENVPCIVT 124
Query: 204 FGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
V+D T EEA + + ++ + G V ++K G
Sbjct: 125 LCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMRKVG 165
>gi|351695721|gb|EHA98639.1| Exosome complex exonuclease RRP42 [Heterocephalus glaber]
Length = 373
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 93 PSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVD 152
P FE + E+ + R +VD +SLC+ + W + +D+ +L+ GGNL D
Sbjct: 173 PEFEGRGGDDLGTEIASTLYRIFSSRSSVDLQSLCISPREHCWVLYVDVLLLECGGNLFD 232
Query: 153 AANIAALASLLTFRRPECSL----GGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFS 208
A ++A A+L R P+ + G D+E+ P + + L + ++P VT
Sbjct: 233 AISLAVKAALFNTRIPKVRVLEDEEGSKDIELSDDP---YDCMQLSVENVPCIVTLCKIG 289
Query: 209 SESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
V+D T EEA + + + ++G V ++K G
Sbjct: 290 CRH--VVDATLQEEACSLASLLVAVTSSGVVTCMRKVG 325
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 27 IRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83
+R+DGR+ +YR ++ G GS+ VQLG T I+ V ++ P ++P+EG L
Sbjct: 24 LRVDGRSCEDYRCAEVETGVVSNTSGSARVQLGHTDILVGVKAEMGTPKLEKPDEGYLEF 83
Query: 84 FTEFSPMADPSFETGRPSESAVELG 108
F ++ +A S SE++V+ G
Sbjct: 84 FVDWEGLASTSV-CNPASEASVDNG 107
>gi|357613811|gb|EHJ68730.1| putative exosome component 8 [Danaus plexippus]
Length = 139
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
+L +P + P+ G L E P+ F G PS+ A + +V + S+ +D + L
Sbjct: 17 ELAKPKAEEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNVVSDIVTNSKCIDMKDL 76
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLT 164
C++ KL W + D+ LD G++VDA I ++SL T
Sbjct: 77 CIVPDKLSWVLYCDMVCLDYDGSVVDACLITLMSSLKT 114
>gi|159464609|ref|XP_001690534.1| hypothetical protein CHLREDRAFT_114378 [Chlamydomonas reinhardtii]
gi|158280034|gb|EDP05793.1| predicted protein [Chlamydomonas reinhardtii]
Length = 302
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 17 RFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR 73
++ + L+ G+R DGR R ++I G DGS+ V++G+T ++ V ++++P
Sbjct: 29 QYYQRFLAEGVRPDGRPIGRARAVTIGAGTITTADGSALVKVGRTTVLAGVRLEIMRPDE 88
Query: 74 DRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKL 133
P G L + E +P + + GR + + + L S A +LC+ GK
Sbjct: 89 TAPAAGALVLSVEMAPFSSADYRPGRAPDHVSAVVEKLSSALLGSGA----ALCIAEGKA 144
Query: 134 VWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPE------- 186
W +D+++LD G ++DAA +AA+A+L R P E
Sbjct: 145 AWRALLDVYVLDADGCVLDAALLAAVAALRDTRIPAVRNTREGHYYAARGAGGRKGGKAG 204
Query: 187 -----EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCA 241
E P + + LP+A+T + L +DPT EE + +T ++ G +
Sbjct: 205 EAGLVEGSPTAVGLGRLPLALTCCLYGKHVL--VDPTADEERLAGCGVTVVVDGAGQLQG 262
Query: 242 IQKPGG 247
+ K GG
Sbjct: 263 LYKAGG 268
>gi|452989947|gb|EME89702.1| hypothetical protein MYCFIDRAFT_32551, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 336
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 119/296 (40%), Gaps = 50/296 (16%)
Query: 27 IRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQ----PYRDRPNEG 79
+R GR P E+R +I G +GS+ V+LG T ++ V +L+ P+ +
Sbjct: 41 VRPSGRRPHEFRTATINTGSLSHSNGSAVVRLGDTAVVCGVRSELLLASDVPHPPDQHAT 100
Query: 80 TLSIF---------TEFSPMADPSFETGRPSES-AVELGRIVDRGLRESRAVDTESLCV- 128
+ +I E S PS G P S A L V L S A+D L +
Sbjct: 101 SSAIVEHLALIVPNVELSTGCSPSHLPGNPPTSLAQSLSHRVSSLLNGSNAIDLADLSIK 160
Query: 129 ----------------LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL 172
+ K WA+ +D+ L GN DAA +A A+L P
Sbjct: 161 HTEPQTEHHLPDEEPKIVTKAYWALYLDILCLALDGNAFDAAWLAVTAALQDTILPRA-- 218
Query: 173 GGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS----------ESLLVIDPTHHEE 222
+ D E+++ P E L + L +A TF FS+ +S ++ DP EE
Sbjct: 219 WWDPDREMVLCSPSASESSRLRLSGLCVASTFAAFSTASPLKQRHAAQSWILADPDAFEE 278
Query: 223 AVMVGKMTATLNANGD----VCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIK 274
+ +T L+ + + I++ GG + + ++ QC++ A + ++
Sbjct: 279 DLCDETVTVVLSPASESGRSIVRIERSGGGVIAKDLMQQCVQRAENRCQQLEASLQ 334
>gi|224013774|ref|XP_002296551.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968903|gb|EED87247.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 374
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 127/321 (39%), Gaps = 78/321 (24%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRK----LSIKFGRED-GSSEVQLG---------QTHIM 61
+ +I S +R DGR PF + L+ R GS+ V LG T ++
Sbjct: 39 RNYINEFTSQNVRPDGR-PFHTSRPVTVLTSFLNRNSSGSAMVTLGGDDGSDNSSSTRVI 97
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFET-GRPSESAV--------------- 105
T + P P G + + SP++ P F+ GR S A
Sbjct: 98 AACTLLVGHPGPSTPTHGDIDVLVTASPLSGPRFDCMGRESMDAANAFYNYNSVSGEKDD 157
Query: 106 --------------------ELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILD 145
++ + R LR SR +D L + GKL W IRI + I++
Sbjct: 158 GVVQLNPETPSSSPQPTDTKDIESWIRRTLRSSRFIDPTELGIEPGKLAWRIRISIQIIN 217
Query: 146 NGGNLVDAANIAALASLLTFRRPECSL----GG------EDDLEVI-------VHPPEER 188
+ GN+ DAA + A A+L + P + GG ED+ +V+ V + R
Sbjct: 218 HDGNVADAALLCACAALGDLKLPMVEVDRREGGVVRIVKEDEAQVMNGGRNKDVEMRKGR 277
Query: 189 E------PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGK-MTATLNANGDVCA 241
P+PL I LP + S S+L++DPT EE V G +T NAN ++
Sbjct: 278 SLTLGPLPVPLTIAILPNIKSKTSASESSILLVDPTRLEEDVSSGNTITMVCNANEEIVE 337
Query: 242 IQKPGGEGVL---QSVIMQCL 259
K G E L Q + C+
Sbjct: 338 FHKRGSESRLSMDQIAAVACM 358
>gi|47208122|emb|CAF91040.1| unnamed protein product [Tetraodon nigroviridis]
Length = 376
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHI 143
F S A P FE E V++ + R +VD LC+ G+ W + +D+ +
Sbjct: 1 FFVSSANATPEFEGRGGEELGVDISNSLYRVFNNKHSVDANKLCISPGEHCWVLYVDVLL 60
Query: 144 LDNGGNLVDAANIAALASLLTFRRPECSLGGED----DLEVIVHPPEEREPLPLIIHHLP 199
L GNL DA +IA A+L + P+ + +D ++E+ P + + + + ++P
Sbjct: 61 LQCDGNLYDAISIAIKAALFNTKIPKVFISSDDEGGKEIELSDDP---YDCMRINVENVP 117
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247
VT ++D T E+A V + ++ G V +K GG
Sbjct: 118 CIVTLCKVGHRH--IVDATLQEKACSVASLIMSVTHKGMVTCTRKVGG 163
>gi|268562221|ref|XP_002638538.1| C. briggsae CBR-EXOS-7 protein [Caenorhabditis briggsae]
Length = 300
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 127/287 (44%), Gaps = 27/287 (9%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQT-HIMGFVTGQL- 68
+EK F+ + + IR DGR ++R + ++ G +GS VQLGQT ++ + +L
Sbjct: 8 DEKLFLISGVEQDIRNDGRTCADFRTIVLERGVLSGTNGSCRVQLGQTTDVLAGIKLELE 67
Query: 69 -VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTE--- 124
P ++ + +S +FS A F + E+ SR++D
Sbjct: 68 SFDPAAEKEAKQPMSFHVDFSANASSQFAGKGGDQYGEEISAAFQVAF--SRSLDILPNL 125
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED--DLEVIV 182
S +LA W I +DL +L G++ DA ++A + +L PE + +D + +++
Sbjct: 126 SKTLLAEGYRWKINVDLSVLQWAGSVPDACSLAIIGALSDLEVPEVEVAPDDGGKVSIVL 185
Query: 183 HPPE-----EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNAN- 236
P E +P+ I P+ +T S +L +D + EE + ++ + N
Sbjct: 186 KRPRTGGNMRDEEVPVAI--CPMLLTVSKIGSANL--VDCSPEEECCIRSQLLIGVAKNL 241
Query: 237 ----GDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
D+ I++ GG + I LAS+ A + + I+ ++T
Sbjct: 242 NVDDYDITCIKQHGGGLLEMESIQDMTELASKTAGGLYQAIEKRLKT 288
>gi|428164753|gb|EKX33768.1| hypothetical protein GUITHDRAFT_155941 [Guillardia theta CCMP2712]
Length = 267
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 32/268 (11%)
Query: 29 IDGRNPFEYRKLSIKFGRE---DGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGT-LSIF 84
+DGR E R + +K G GS+ V G T + V +L D EG+ S+
Sbjct: 1 MDGRQRLESRNIQLKVGTVPSCYGSASVHCGGTKAIASVQAEL----SDTGAEGSGASVE 56
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT--ESLCVLAGKLVWAIRIDLH 142
+ PS GR +E + D +R + T +SL +++ + W + +D+
Sbjct: 57 VSVTCSNMPS-SAGRQAED-MSAALTADANRIFARPIPTLIKSL-MVSDRHAWKLFVDVM 113
Query: 143 ILDNGGNLVDAANIAALA--------SLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLI 194
+++ G L+D +IA A +L TF + S+G E LE+ EE+ PL
Sbjct: 114 LVEYDGCLLDVVSIAVWAALSDTKLPTLSTFTNADGSVGVELSLEM-----EEKNKKPLD 168
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ +P V+ + D T EEA +++ +NA +VC I K G G+ +
Sbjct: 169 LSSVPTYVSITQVGKH--FIADATAIEEACAGCRISYAINARNEVCCIHKSEGRGLKPTQ 226
Query: 255 IMQCLRLASRMASD----ITKKIKDAVE 278
I+ + A++ S+ + KK++D ++
Sbjct: 227 IVSTMGAATQFGSNRMKFLDKKLQDLID 254
>gi|147852316|emb|CAN82224.1| hypothetical protein VITISV_011872 [Vitis vinifera]
Length = 1621
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 12/173 (6%)
Query: 115 LRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174
L+ S ++ + L +++GK W +D++ LD G+L DAA +AA+A+ R P SL
Sbjct: 128 LQGSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNE 187
Query: 175 E----DDLEVIVHPPEEREPL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVM 225
E E E+EP+ L + LP ++T ++ ++ DPT EE++M
Sbjct: 188 EGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLT--CILHKNYILADPTAEEESIM 245
Query: 226 VGKMTATLNANGDVCAIQKPGGEGV-LQSVIMQCLRLASRMASDITKKIKDAV 277
+T L+++G + ++ KPGG + S + C+ L + ++ + +A+
Sbjct: 246 ETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAI 298
>gi|413935075|gb|AFW69626.1| hypothetical protein ZEAMMB73_456689, partial [Zea mays]
gi|413935078|gb|AFW69629.1| hypothetical protein ZEAMMB73_937743, partial [Zea mays]
Length = 209
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 120 AVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC--SLGGEDD 177
A+D SL V+ GK+ W + ID ++ + GNL+DA +A +L P+ S+ D
Sbjct: 43 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVSAASD 102
Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG 237
E V +E E L +P+ +T ++D T EE+ M ++ ++N +G
Sbjct: 103 EEPEVDVSDE-EFLQFDTSGVPVIITLTKVGRH--YIVDATSEEESQMSSAVSVSVNRHG 159
Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMA 266
+C + K GG G+ SVI + +A ++
Sbjct: 160 QICGLTKRGGAGLDPSVIFDMISVAKHVS 188
>gi|347829018|emb|CCD44715.1| similar to 3' exoribonuclease family protein [Botryotinia
fuckeliana]
Length = 344
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 118/298 (39%), Gaps = 61/298 (20%)
Query: 24 SSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQL-----VQPYR-- 73
+S R +GR+P ++R I G +GS+ V++G T ++ V G++ V YR
Sbjct: 36 NSSKRANGRSPTQFRAPHINTGSLTHAEGSAVVRIGDTAVVCGVRGEILLASNVGTYRVD 95
Query: 74 -------DRP--NEGT-LSIFT---EFSPMADPSFETGRP-SESAVELGRIVDRGLRESR 119
RP NE L + E + P+F G+P S A L + L SR
Sbjct: 96 KSTTAPSSRPGYNEAKELDLLVPNIELATGCSPAFLPGQPPSTLAQSLSTRIYSLLHSSR 155
Query: 120 AVDTESLCVL-----------------------AGKLVWAIRIDLHILDNGGNLVDAANI 156
VD E L + K W + ID+ + GN +DAA
Sbjct: 156 MVDDEDLRIWYQSPDLSEQDRMEDDEEPETVEPEVKAFWTLYIDILFISLDGNPLDAAWA 215
Query: 157 AALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES----- 211
A +++L R P+ D E+I+ E L + LPIA TF F ++
Sbjct: 216 AVVSALRNVRLPKAHWDA--DREMILCDDEVSLSKKLTLRGLPIAATFLVFRAKEQKRGK 273
Query: 212 ----LLVIDPTHHEEAVMVGKMTATLNANGD---VCAIQKPGGEGVLQSVIMQCLRLA 262
++ DP EE + +T ++ D + + K GG V + + L LA
Sbjct: 274 DKKFWILADPDTFEEGLCDESITMVVDCKADKPKILGLSKVGGTTVGKDEMKHVLELA 331
>gi|223972967|gb|ACN30671.1| unknown [Zea mays]
Length = 193
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 116 RESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC--SLG 173
R + +D SL V+ GK+ W + ID ++ + GNL+DA +A +L P+ S+
Sbjct: 23 RAQQTIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPKVNVSVS 82
Query: 174 GEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL 233
D E V +E E L +P+ +T ++D T EE+ M ++ ++
Sbjct: 83 AASDEEPEVDVSDE-EFLQFDTSGVPVIITLTKVGRH--YIVDATSEEESQMSSAVSVSV 139
Query: 234 NANGDVCAIQKPGGEGVLQSVIMQCLRLASRMA 266
N +G +C + K GG G+ VI + +A ++
Sbjct: 140 NRHGQICGLTKRGGAGLDPGVIFDMISVAKHVS 172
>gi|76157410|gb|AAX28345.2| SJCHGC05580 protein [Schistosoma japonicum]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 159 LASLLTFRRPECSLGGEDDL-EVIVHPPEEREP-LPLIIHHLPIAVTFGFFSSESLLVID 216
+A+L FRRP+ + DD+ +V+V + P +PL I +P+ VT G ++++D
Sbjct: 1 VAALSAFRRPDVYV---DDMGKVLVDFKAKFRPRVPLSIRRIPVLVTLGLTPDAKVILVD 57
Query: 217 PTHHEEAVMV-GKMTATLNANGDVCAIQKPGGEGVLQ-SVIMQCLRLASRMASDITKKIK 274
PT EE ++ G++ L ++C + G +Q S + +C+RLA+ A + I
Sbjct: 58 PTAREELILTGGRVLLGLTNTSEICCLYTTGLTVPIQCSSLSRCIRLANSKAKSLVSLID 117
Query: 275 DAVETYNTER 284
VE + +R
Sbjct: 118 WVVEGLSVQR 127
>gi|195334771|ref|XP_002034050.1| GM21652 [Drosophila sechellia]
gi|194126020|gb|EDW48063.1| GM21652 [Drosophila sechellia]
Length = 467
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
EK +I + R DGR+ +YR + ++ G GS+ ++L T I+ V ++ P
Sbjct: 10 EKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
P G L F + S A P FE S+ A EL + A + +LC++ G
Sbjct: 70 NPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLKNAYESPLAFNYRTLCLIPG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANI 156
+ W + ID+ + N L+DA+ +
Sbjct: 130 QQCWKLYIDI-LNQNSARLLDASIV 153
>gi|302812587|ref|XP_002987980.1| hypothetical protein SELMODRAFT_426733 [Selaginella moellendorffii]
gi|300144086|gb|EFJ10772.1| hypothetical protein SELMODRAFT_426733 [Selaginella moellendorffii]
Length = 848
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 15/146 (10%)
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
IIH +P+A+TFGFF+ +V+DP+ EEA++ G +T + G + +K EGV++
Sbjct: 430 IIHDVPVAITFGFFTYGGPVVVDPSRREEALITGSLTLIVTQAGKLLFRKK---EGVVKW 486
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHP------TSITLDGSV-NLKE 306
+ L SR+A D++ +K+ VE + + K K P T GS + +
Sbjct: 487 SELLWPVLQSRVA-DVS-LLKEWVERQESLQNFYKTKEKPFAGFIGVQKTWYGSFHHFQM 544
Query: 307 KLNEPSGHNVVNELSRKHLEKPRLAS 332
KLN G + + + K L PR S
Sbjct: 545 KLNGSLG---IRKYTPKRLTTPRTKS 567
>gi|66362500|ref|XP_628216.1| RPR45-like archaeo-eukaryotic exosomal RNAse PH [Cryptosporidium
parvum Iowa II]
gi|46229700|gb|EAK90518.1| RPR45-like archaeo-eukaryotic exosomal RNAse PH [Cryptosporidium
parvum Iowa II]
gi|323509167|dbj|BAJ77476.1| cgd7_230 [Cryptosporidium parvum]
Length = 291
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 31/285 (10%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR----EDGSSEVQLGQTHIMGFV 64
W L +E ++ L G+R DGR P R ++ G+ V++G + +
Sbjct: 7 WYLRPDE--YLNRFLEQGVRCDGRKPEVCRNFKLELNELSSSNYGAVSVRIGNSSYIACC 64
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE--TGRPSESAVELGRIVDRGLRESRAVD 122
+ Q++ D+ + ++ + P+ TG P+ S I + L +SR ++
Sbjct: 65 SPQIIHTGLDQESNNAITNTRINVSLELPTICGFTGNPNHSNFVSNSITE-CLNDSRIIN 123
Query: 123 TESLCV-LAGK-LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
E+ GK L W I I + L GN +D IA++ASL P+ +L +DD
Sbjct: 124 KEAFITKFQGKELHWLIDIKVVCLSYDGNPLDYTLIASIASLRNTILPK-NLVWDDDYNW 182
Query: 181 -------IVHPPEEREPL-----PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGK 228
I +RE + + +PI V+F + ++S+ V DP + E++ +G
Sbjct: 183 FRISSDPISKDEVKREQMMQDSSSFFLKKVPIFVSFSYL-NDSIWVCDPNYMEDS--IGS 239
Query: 229 MTATLNANGDVCAIQKPGGE----GVLQSVIMQCLRLASRMASDI 269
+ + +Q G L+S + Q + +AS+ A +I
Sbjct: 240 SVTICCVDNQINTLQTQCISKYTPGKLKSNLSQLIDVASKRADEI 284
>gi|126654493|ref|XP_001388417.1| exoribonuclease PH [Cryptosporidium parvum Iowa II]
gi|126117122|gb|EAZ51222.1| exoribonuclease PH, putative [Cryptosporidium parvum Iowa II]
Length = 295
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 24/273 (8%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKF---GREDGSSEVQLGQTHIMGFVTGQLVQP 71
EK F+E + GIR DGR+ ++R + I +GSS ++ + I+ V +
Sbjct: 24 EKLFLEDGVDQGIRNDGRDLTDFRPIVIALDVISTANGSSRIRNDELDIIVAVKVSFLNN 83
Query: 72 YRDRPNEGTL---SIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
L +I + S +A PSF S + + D + D L +
Sbjct: 84 LFFFIIALILFSSNIMDKISNVA-PSFTEEDYSFYITNIVK--DMCFKN---FDLSKLTI 137
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-------GEDDLEVI 181
L KL W I ID IL GGN+VD IA +L T R P+ + D+
Sbjct: 138 LENKLYWNIYIDATILSFGGNMVDWVTIAIHTALRTTRIPKIHVSPSISTKENNKDVSYT 197
Query: 182 VHPPEER-EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
V P P P +P ++ G + ++ D E+ + ++N+ G+
Sbjct: 198 VSPSVCSGTPFPF--QDIPFIISAGCIRGK--VIWDMNMQEQICSKTIIALSINSKGECV 253
Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
A+ K + ++I + A+ ++S+I+K +
Sbjct: 254 AMNKVYSNTLDLNLIPTIINKAAEISSEISKSL 286
>gi|32566065|ref|NP_508024.2| Protein EXOS-7 [Caenorhabditis elegans]
gi|24817316|emb|CAB07377.2| Protein EXOS-7 [Caenorhabditis elegans]
Length = 312
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 126/286 (44%), Gaps = 37/286 (12%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQT-HIMGFVTG 66
L+ +EK F+ T + IR DGR+ ++R++ ++ G +GS VQLGQT ++ +
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 67 QLVQPY---RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
+L + Y ++ + ++ +FS A F E A EL S+A+D
Sbjct: 65 EL-ESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121
Query: 124 E---SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED--DL 178
+ LA W I +D+ +L G++ DA +IA + +L PE + +D +
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKV 181
Query: 179 EVIVHPPE----------EREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGK 228
+++ P+ + L + P+ +T + +L +D T EE + +
Sbjct: 182 RIVLKRPKVAGNVRDENVQVAMWKLDVMRCPLLLTISKIGTANL--VDCTPEEECCIRSQ 239
Query: 229 MTATLNA----------NGDVCAIQKPGGEGVLQSVIMQCLRLASR 264
+ L A N DV +++ GG + I + L LA++
Sbjct: 240 LLVGLAAIADSSENNEPNYDVTCVKQVGGGLLEMESIQEMLELAAK 285
>gi|405118209|gb|AFR92984.1| opa-interacting protein OIP2 [Cryptococcus neoformans var. grubii
H99]
Length = 272
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 18 FIETALSSGIRIDGRNPFE------------------YRKLSIKFGR---EDGSSEVQLG 56
++ LSSG R DGR +R++SI G GS+ V++G
Sbjct: 36 YLSRFLSSGYRPDGRPILPSSSSSSQPTASASAADDVWRQVSINTGSISTAHGSALVRMG 95
Query: 57 QTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLR 116
T ++ V ++ +P + P EG + + ++ P F+ G P + A ++ L
Sbjct: 96 DTTMVCGVKAEIGEPDTETPGEGFIVPNIDLPALSSPKFKPGPPGDEAQTYSNWLNELLV 155
Query: 117 ESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVD 152
S+ + SL + GK W + ID+ ++ GN D
Sbjct: 156 SSKTIPLSSLLIAPGKAAWVLYIDVVCINYDGNAFD 191
>gi|353236941|emb|CCA68925.1| hypothetical protein PIIN_02785 [Piriformospora indica DSM 11827]
Length = 333
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 11 LTVNEKRFIETALSSG--IRIDGRNPFEYRKLSIKFGRE-----DGSSEVQLGQTHIMGF 63
L+ EK +I T+L+S +R DGR P +YR + + G +GS+++++G T ++
Sbjct: 5 LSRAEKSYIITSLTSKPPLRHDGRGPVDYRLIGLARGDSVAPLANGSAKIRVGGTEVVAA 64
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT 123
V + V+ +EG + SP A P + + +L ++ +++ D+
Sbjct: 65 VRLE-VEDIDLELDEGRMRCNVTCSPAAYPHLSANQQDDIQKDLTSLLQSTFSPTKSHDS 123
Query: 124 ----------ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
+SL +L G+ W + +D +L + GN+ D +A A++ R P
Sbjct: 124 NGDSFTSVMSKSLTILPGRKAWTMYLDAVVLSDAGNVHDVLFLACRAAICDTRVP 178
>gi|67624141|ref|XP_668353.1| exosome complex exonuclease RRP43 (Ribosomal RNA processing protein
43) [Cryptosporidium hominis TU502]
gi|54659558|gb|EAL38129.1| exosome complex exonuclease RRP43 (Ribosomal RNA processing protein
43) [Cryptosporidium hominis]
Length = 291
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 125/285 (43%), Gaps = 31/285 (10%)
Query: 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR----EDGSSEVQLGQTHIMGFV 64
W L +E ++ L G+R DGR P R ++ G+ V++G++ +
Sbjct: 7 WYLRPDE--YLNRFLEQGVRCDGRKPEVCRNFKLELNELSSSNYGAISVRIGKSSYIACC 64
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFE--TGRPSESAVELGRIVDRGLRESRAVD 122
Q++ D+ + ++ + P+ TG P+ S I + L +SR ++
Sbjct: 65 NPQIIHTGLDQESNNAITNTRINVSLELPTICGFTGNPNHSNFVSNSITE-CLNDSRIIN 123
Query: 123 TESLCV-LAGK-LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
E+ GK L W I I + L GN +D IA++ASL P+ +L +DD
Sbjct: 124 KEAFITKFQGKELHWLIDIKVVCLSYDGNPLDYTLIASIASLRNTILPK-NLVWDDDYNW 182
Query: 181 --IVHPPEEREPL----------PLIIHHLPIAVTFGFFSSESLLVIDPTHHEE----AV 224
I P ++ + + +PI V+F + ++S+ V DP + E+ +V
Sbjct: 183 FRISSDPVSKDEVKREQMMQDSSSFFLKKVPIFVSFSYL-NDSIWVCDPNYMEDSIGSSV 241
Query: 225 MVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDI 269
+ + + +N C + G+ L++ + Q + +AS+ A +I
Sbjct: 242 TICCVDSQINTLQTQCISKYTPGK--LKNDLSQLIDVASKRADEI 284
>gi|221484017|gb|EEE22321.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
gi|221505289|gb|EEE30943.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 291
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
E ++E ++ +R DGR E R ++ + S+ V+ + ++ V+ QL +P
Sbjct: 44 ELLYLEEGVACNVREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARP 103
Query: 72 YRDRPNEGTLSIFTEFSPMADP----------SFETGRPSESAVELGRIVDRGLRESRAV 121
P+EG + + + S SF G S ++ + D L AV
Sbjct: 104 TAA-PDEGEVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQALLSDMVLS---AV 159
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
D + LC++ GKL+W + +D +L GG L+DA ++A A+L T P
Sbjct: 160 DKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAALRTTVLP 206
>gi|237836521|ref|XP_002367558.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965222|gb|EEB00418.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 297
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
E ++E ++ +R DGR E R ++ + S+ V+ + ++ V+ QL +P
Sbjct: 50 ELLYLEEGVACNVREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARP 109
Query: 72 YRDRPNEGTLSIFTEFSPMADP----------SFETGRPSESAVELGRIVDRGLRESRAV 121
P+EG + + + S SF G S ++ + D L AV
Sbjct: 110 TAA-PDEGEVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQALLSDMVLS---AV 165
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
D + LC++ GKL+W + +D +L GG L+DA ++A A+L T P
Sbjct: 166 DKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAALRTTVLP 212
>gi|403335752|gb|EJY67058.1| hypothetical protein OXYTRI_12647 [Oxytricha trifallax]
Length = 297
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 9/166 (5%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLG--QTHIMGFV 64
++ NEK FI GIR DGR P ++R I G GS+ + G + I+ +
Sbjct: 4 QICENEKVFITEGFQQGIRRDGRGPLDHRSYKINLGTIPHAFGSASLMFGEEEVQIICAI 63
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVD-RGLRESRAVDT 123
L +P P +G + E S F R +S + R+++ +D
Sbjct: 64 KADLQKPLPSEPKKGQIKFHLESSQTGSSLF--TREEQSEIIKNRLLNILYTLYGNIIDR 121
Query: 124 ESLCVLAGKLVWAIRIDLHILDN-GGNLVDAANIAALASLLTFRRP 168
E L V G+ W + +D+ +++ +D +A ++ L F+ P
Sbjct: 122 EELNVFEGQFSWLLNVDILVMEELSFQQLDYIGLAIRSAFLDFQLP 167
>gi|170086802|ref|XP_001874624.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649824|gb|EDR14065.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 345
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 15 EKRFIETALSSG--IRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ--------THIM 61
E+ +I+TAL S +R DGR+ ++R ++++ G +GS+ + +GQ T ++
Sbjct: 10 EQSYIQTALLSDPPLRTDGRSLHDFRSVALETGIAPLANGSARISIGQDPHDGSGGTEVL 69
Query: 62 GFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAV 121
++ + G + SP A P T + ++ IV + L ++
Sbjct: 70 AAAKVEVESVEEGGVDAGRVVCTVSCSPAAYPQLATAALEDLQYDMTTIVHQTLSHP-SL 128
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168
++L +L GK W + +DL +L + GN+ DA +AA A+L + P
Sbjct: 129 HPKNLRILPGKKSWLLNLDLIVLADSGNIYDALFMAARAALWDTKIP 175
>gi|308486185|ref|XP_003105290.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
gi|308256798|gb|EFP00751.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
Length = 314
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 128/299 (42%), Gaps = 37/299 (12%)
Query: 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQT-HIMGFVTGQL- 68
+EK F+ + IR DGR ++R + ++ G +GS VQLGQT ++ + +L
Sbjct: 8 DEKLFLIHGVEQDIRNDGRACADFRPMILERGVLSGTNGSCRVQLGQTTDVLAGIKLELE 67
Query: 69 -VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDT---E 124
P ++ + +S +FS A F + EL + SR++D
Sbjct: 68 AYDPIAEKQPKQPMSFHVDFSANASSQFAGKGGDQYGEELSAAFQ--VAYSRSLDIIPNL 125
Query: 125 SLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED--DLEVIV 182
S LA W I +D+ +L G++ DA ++A + +L PE + +D + +++
Sbjct: 126 SKTQLAAGYRWKIHVDISVLQWAGSVPDACSLAIIGALSDLEIPEVDVTPDDGGKVSIVL 185
Query: 183 HPP-------EEREPLP---LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTAT 232
P +E P+ LI+ P+ +T + +L +D + EE + ++
Sbjct: 186 KRPRIGGDVRDEEVPVAMWKLIVTSCPMLLTVSKIGTANL--VDCSPEEECCIRSQLLIG 243
Query: 233 LNAN------------GDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279
+ N D+ +++ GG + I +LA+R A + + I + + T
Sbjct: 244 VAKNLESTPESDDANEYDITCVKQHGGGLLEMESIDDMTKLATRTAKGLYEAIGNRLNT 302
>gi|219129727|ref|XP_002185033.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
gi|217403528|gb|EEC43480.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
Length = 354
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 42/195 (21%)
Query: 7 NTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSI----KFGREDGSS----------- 51
+T L+ +E FI R+DGR EYR I ED SS
Sbjct: 4 STPLLSRSEMDFIREGCHQNCRVDGRGRDEYRGYRIVTEGSMSHEDNSSTSNPPLILSNG 63
Query: 52 -------------EVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETG 98
+V L H++ V ++V P P +G + + E + P+ +
Sbjct: 64 SARLFEAARHAHEDVSL---HMLCSVKAEVVHPSALHPAQGAMELHVESLTSSGPNSQR- 119
Query: 99 RPSESAVE--LGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNG---GNLVDA 153
R ++ +E L +++ R L VD E+LC++ VW + +DL +L G G+L DA
Sbjct: 120 RKTQDELEATLSKLLMRDL-----VDLEALCIVPYHYVWRLHVDLFVLTAGSSHGSLCDA 174
Query: 154 ANIAALASLLTFRRP 168
A+ A+L R P
Sbjct: 175 ASHVIRAALQCTRLP 189
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 29/197 (14%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG- 66
L V + + I L G R+DGR P E R + ++ G DGSS V++G T I+ V G
Sbjct: 2 LQVQKPKLI---LDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGP 58
Query: 67 -QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGL---------- 115
++ + PN TL + +P + ++ PS +EL +++ L
Sbjct: 59 REMHPRHLALPNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIREALESSVLVEQFP 118
Query: 116 RESRAVDTESLCVLAG-KLVWAIRIDLHILDNGGNLVDAANIAALA-------SLLTFRR 167
R S V E + AG +L + L I+D G + DA IAA+A +L
Sbjct: 119 RSSIDVFMEVIQADAGTRLASLMAASLAIIDAGIPVRDA--IAAVAVGKADGVVVLDLNE 176
Query: 168 PECSLGGEDDLEVIVHP 184
PE + GE D+ V + P
Sbjct: 177 PE-DMWGEADMPVAMMP 192
>gi|219124479|ref|XP_002182530.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405876|gb|EEC45817.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 764
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGRED---GSSEVQLGQTHIMGFVTGQLV 69
++ K +E +G R DGR + R+ +I+ G + GSS ++LG T ++ VT Q+
Sbjct: 34 LDSKLQVENFYQNGTRPDGRLFHQTRQTNIQRGILNNACGSSLIKLGTTQVLAAVTYQVG 93
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
QP + G+ + D S AV L + R L+++ +D E L ++
Sbjct: 94 QPIVSGSSGGSGDDSNKTK--GDIVIAADNGSVDAV-LQSWLQRLLQDT--IDLEQLSIV 148
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP--------ECSLGGEDDLEVI 181
+ + + + + +L+ GNL DA +A +A+LL + P + L DD
Sbjct: 149 P-QAAFRLIVTVQVLNVAGNLRDACWLACVAALLDTKLPSNTVYEAGKVWLKDNDDTADA 207
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFFSS-ESLLV--IDPTHHEEAVMVGKMTATLNA 235
+ E LP+ LPI++T G +S+ E+ +V +DPT EE + G +T +NA
Sbjct: 208 NTGTKSLE-LPV----LPISLTMGVWSTIEAGMVHMVDPTIEEEESLSGSLTIIVNA 259
>gi|449298658|gb|EMC94673.1| hypothetical protein BAUCODRAFT_555446 [Baudoinia compniacensis
UAMH 10762]
Length = 333
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 121/299 (40%), Gaps = 53/299 (17%)
Query: 13 VNEKRFIETALS--SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQ 67
+ + F++ L IR +GR P E RK ++ G +GS+ V++G T ++ V +
Sbjct: 21 LTPRPFLQAHLQHKDSIRPNGRRPEEVRKPTVNTGSLSYSNGSAVVRVGDTAVVCGVRAE 80
Query: 68 LV-------QPYRDRPNE------GTLSIFTEFSPMADPSFETGRPSES-AVELGRIVDR 113
++ P D E G L E S P+ G P A L +
Sbjct: 81 ILLASDIPHPPNGDADAEHLLEDLGLLVPNVELSTGCSPTHLPGNPPGILAQALSYRILS 140
Query: 114 GLRESRAVDTESLCV-----------------LAGKLVWAIRIDLHILDNGGNLVDAANI 156
L S V+ + L + K W + ID+ + GN DAA
Sbjct: 141 LLHVSDLVNLQDLQIEYTVPQTDDDLPDAGPKTVVKAYWTLYIDILCIAMDGNPFDAAWT 200
Query: 157 AALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS------- 209
A +A+L P + D E+I+ P E E L + +LP+A TF +S+
Sbjct: 201 AVIAALRDTSLPRA--WWDPDREIILCSPLEAEASRLRLRNLPMASTFAVYSTSSPLKQR 258
Query: 210 ---ESLLVIDPTHHEEAVMVGKMTATLNANGD-----VCAIQKPGGEGVLQSVIMQCLR 260
ES ++ DP EE V +T L+ + D + ++K GG V +++C++
Sbjct: 259 AHAESWVLADPDGFEEDVCHESVTVVLSHHMDGKKSGILRVEKHGGGIVDNVALLRCVQ 317
>gi|402468308|gb|EJW03481.1| hypothetical protein EDEG_02177 [Edhazardia aedis USNM 41457]
Length = 239
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 36/252 (14%)
Query: 21 TALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGT 80
+ + S R+D R R+ +IK E+ ++ +T I+ + L PY D+P G
Sbjct: 6 SLVESNARLDERLFLTQREYTIK--HENSLFVLESDKTFIILNYSISLCVPYIDKPQSGI 63
Query: 81 LSIFTEFSPMADP-SFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
+ I + F+ + + +FE S + + L +SR +D ESLC++ +L ++I
Sbjct: 64 VRI-SVFNHIKERGAFEKKISST--------LKKILIKSRCIDQESLCLIFNELCYSIDF 114
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE-----DDLEVIVHPPEEREPLPLI 194
+ IL++ GNL LL + + + E DL + H + E I
Sbjct: 115 SIQILESNGNLFRFC-----TELLLYSIEKIDIINELSSKYSDL-MAKHILADSE----I 164
Query: 195 IHHLPIAV-----TFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE- 248
H+ I V F F + +++DPT E+ + ++ N ++ ++K GGE
Sbjct: 165 FHNRKILVNYQPKCFYFIQIKDKILVDPTAAEDNLKDAWFLVVMD-NKNMLYLEKSGGEC 223
Query: 249 --GVLQSVIMQC 258
+ SVI C
Sbjct: 224 NIADIMSVITYC 235
>gi|302781909|ref|XP_002972728.1| hypothetical protein SELMODRAFT_413292 [Selaginella moellendorffii]
gi|300159329|gb|EFJ25949.1| hypothetical protein SELMODRAFT_413292 [Selaginella moellendorffii]
Length = 591
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
I+H +P+A+TFGFF+ +V+DP+ EEA++ G +T + G + +K EGV++
Sbjct: 172 IMHDVPVAITFGFFTYGGPVVVDPSRREEALITGSLTLIVTQAGKLLFRKK---EGVVKW 228
Query: 254 VIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHP 293
+ L SR+A D++ +K+ VE + K K P
Sbjct: 229 SELLWPVLQSRVA-DVS-LLKEWVERQEGLQNFYKTKEKP 266
>gi|297565611|ref|YP_003684583.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
gi|296850060|gb|ADH63075.1| ribonuclease PH [Meiothermus silvanus DSM 9946]
Length = 235
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 104/260 (40%), Gaps = 38/260 (14%)
Query: 28 RIDGRNPFEYRKLSIKFGRE---DGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
R DGR P E R LSI G +GS+ V+LG T ++ V+ P RP EG L
Sbjct: 3 RKDGRAPLEMRPLSIHTGYNLYAEGSALVELGHTKVLVTVSLTDGVPRHVRPREGWL--M 60
Query: 85 TEFSPMADPS-----FETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
TE++ + + E + S E+ R + R R L L GK + I
Sbjct: 61 TEYNLLPRSTKERKERERQKLSGRTAEIQRFMGRAFRA-----VLDLSSLPGK---TVVI 112
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D +L G A+ I A+L G D+ P +E
Sbjct: 113 DADVLQADGGTRVASLIGGYAALHQALDKMVRSGALDEW-----PLQEFA---------- 157
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG--VLQSVIMQ 257
A++ G+F E +L +D TH E+ +T G+V + GGEG V Q V Q
Sbjct: 158 -AISLGWFGEERIL-LDLTHVEDENAWADLTVVATQGGEVIEVHG-GGEGRAVPQPVYKQ 214
Query: 258 CLRLASRMASDITKKIKDAV 277
L ++ ++I A+
Sbjct: 215 MLETGLGFIPELVRRIHQAL 234
>gi|296423271|ref|XP_002841178.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637413|emb|CAZ85369.1| unnamed protein product [Tuber melanosporum]
Length = 330
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 43/288 (14%)
Query: 16 KRFIETALSS--GIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLV- 69
K F+E L S R GRNP +R S+ GS+ V+ G T ++ V G+++
Sbjct: 28 KIFLERHLQSTPATRPSGRNPDTFRTPSLHTNSLSHAHGSAVVRTGDTAVVCGVRGEVLS 87
Query: 70 ---------------QPYRDRPNEG---------TLSIFTEFSPMADPSFETGRPSESAV 105
+ R + EG + E + G P++ A
Sbjct: 88 LAAGTGGRIVVLRTGEDGRGKNGEGEGDEVRERGLVVTNLEMGTGCSRDYHPGPPTDFAQ 147
Query: 106 ELGRIVDRGLRESRAVDTESLCVL-----AGKLVWAIRIDLHILDNGGNLVDAANIAALA 160
+ + R L ++ + ++SL +L K W + ID ++ GN++DAA + LA
Sbjct: 148 AVTARLHRLLLSNKLISSQSLRILDPNTEEVKAYWVLYIDAVVISLDGNVLDAAWASILA 207
Query: 161 SLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF-----GFFSSESLLVI 215
+L + R P+ + D EV+V PE L + L +F G +++
Sbjct: 208 ALRSTRLPQAYW--DQDTEVVVCYPEVSRYKSLDVKGLAFTASFAVIDLGAGKGGKVILS 265
Query: 216 DPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLAS 263
DP EE V ++ V I+K GG G + V+ +C+ A+
Sbjct: 266 DPDEFEEGVCGERVMVCALEGEKVGWIEKGGGVGQVAEVV-ECVHRAT 312
>gi|255644374|gb|ACU22692.1| unknown [Glycine max]
Length = 170
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 15/151 (9%)
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
D + L +++GK W +D++ LD G L DAA ++A+A+L + P S+ DD +++
Sbjct: 3 DLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAIAALSHLQIP--SIAMNDDGKIV 60
Query: 182 V----------HPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTA 231
+ P +E L + +P ++T ++ ++ DPT EE++M +T
Sbjct: 61 LVSDEDGQKRAQEPVNKEKRKLTLRSIPFSLTCIL--HKNYILADPTAEEESIMETHVTV 118
Query: 232 TLNANGDVCAIQKPGGEGV-LQSVIMQCLRL 261
L+ +G + ++ KPGG + S I C L
Sbjct: 119 VLDTSGQLISLYKPGGPVLAYTSAIQDCAAL 149
>gi|349804455|gb|AEQ17700.1| putative exosome component 8 [Hymenochirus curtipes]
Length = 164
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L R DGR+ E+R +I G DGS+ V+LG ++ + + P D PN+G
Sbjct: 11 LKENCRPDGRDLSEFRTTTINVGSITTADGSALVKLGNCTVVCGIKAEFTAPPSDAPNKG 70
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ + +P+ +F G P E A + + + S+ + E LC
Sbjct: 71 YIVPNVDLTPLCSSNFRPGPPGEEAQVASQFIADVIDNSQMLLKEDLC 118
>gi|349805879|gb|AEQ18412.1| hypothetical protein [Hymenochirus curtipes]
Length = 111
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ E+ +I + +R DGR +YR + ++ GS+ V++G T ++ V +
Sbjct: 6 LSEAERVYILHGIQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVEL 107
+ P +RP EG L F + S A P FE GR E E+
Sbjct: 66 MGTPKLERPGEGYLEFFVDCSANATPEFE-GRGEELGTEI 104
>gi|393248126|gb|EJD55633.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 310
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 15 EKRFIETALSSG--IRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV 69
E ++ ALS+ +R DGR +YR +SI G +GS+ V +G T ++ + +L
Sbjct: 5 ECSYVRQALSTNPPVRADGRGLLDYRTVSIVRGTIPLANGSARVSIGGTEVLA--SAKLE 62
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
DR G ++ A P+ G + A + ++ L + V ++L ++
Sbjct: 63 VTDADR---GAIACNVVCPVSAYPTLAPGALDDLAADHTHVLHSVLGDPSLV-PDTLTII 118
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171
K W + +DL ++ + GN+ DA +AA +L+ R P S
Sbjct: 119 PKKKAWLLTLDLLVMADAGNIYDALFLAARIALIDTRVPRTS 160
>gi|167521539|ref|XP_001745108.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776722|gb|EDQ90341.1| predicted protein [Monosiga brevicollis MX1]
Length = 313
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 33/262 (12%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
E ++I + IR DGR R I+ G +GS+ Q T ++ V +
Sbjct: 12 EAQYILDGVQEDIRNDGRQRHHARPYHIETGLVSNANGSARAQHVGTDVLVGVKAERGVA 71
Query: 72 YRDRPNEGTLSIFT-------------------EFSPMADPSFETGRPSESAVELGRIVD 112
+EG + + + +F+ A + +GR E + GR +
Sbjct: 72 LGQNEDEGQIEVLSRMFKKTQHALGNVVEQFAVQFASSA-TAMLSGRERE---DYGRAIA 127
Query: 113 RGLRESR----AVDTESLCVLAGKLVWAIRIDLHIL-DNGGNLVDAANIAALASLLTFRR 167
L+E A+D ++LC++AG+ + +++D+ IL NGG + D A +A A+L +
Sbjct: 128 LALQEMADVRGAIDRQALCIIAGREAFTLKVDVMILAANGGAIYDTAAVAVYAALASCDI 187
Query: 168 PECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVG 227
P +L + D +V+ + L + LP+ T S V+D T E A
Sbjct: 188 PSVTLVKDADGDVVDWEFADTPDHQLDVSRLPLLTTIA--SINDFAVLDATTAEMACADA 245
Query: 228 KMTATLNANGDVCAIQKPGGEG 249
M ++A G++C + G G
Sbjct: 246 AMILGIDAQGELCTCRLVGRTG 267
>gi|19074289|ref|NP_585795.1| similarity to HYPOTHETICAL PROTEIN OF THE RNASE PH FAMILY
YBX3_SCHPO [Encephalitozoon cuniculi GB-M1]
gi|19068931|emb|CAD25399.1| similarity to HYPOTHETICAL PROTEIN OF THE RNASE PH FAMILY
YBX3_SCHPO [Encephalitozoon cuniculi GB-M1]
gi|449329466|gb|AGE95738.1| hypothetical protein ECU06_0390 [Encephalitozoon cuniculi]
Length = 218
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPN 77
++ + +G R D R E R+L ++ R S V +G + ++ +PY DRP+
Sbjct: 2 IVKNLVKAGERFDNRKIEEARRLEVE--RISNSCLVTMGASQLLTVFQKSTSRPYIDRPH 59
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAI 137
EG +S F ++ L + + + +++D ESLC+ + V I
Sbjct: 60 EGIVS------------FSVSTGAKKYERLVNFLHKVYIKQKSIDLESLCIRLNEEVVLI 107
Query: 138 RIDLHILDNGGNLVDAA--NIAALASLLTFRR---PE----CSLGGEDDLEVIVHPPEER 188
IDL +L G++ A + ++ L R P+ CS+GG V+V P E
Sbjct: 108 HIDLRVLSGDGSIYSLAISGVNSVLEALGVRMNYVPQCFFYCSIGG-----VVVTDPSED 162
Query: 189 E 189
E
Sbjct: 163 E 163
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 29/197 (14%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG- 66
L V + R I L G R+DGR P E R + I+ G DGSS V++G T I+ V G
Sbjct: 2 LQVQKPRLI---LEDGRRLDGRRPDELRPMKIEIGVLKNADGSSLVEVGNTKIIAAVYGP 58
Query: 67 -QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD--- 122
++ + PN L + +P + ++ PS +EL +++ L S V+
Sbjct: 59 REMHPRHLALPNRAVLRVRYHMTPFSTDERKSPAPSRREIELSKVIREALESSILVEQFP 118
Query: 123 -------TESLCVLAG-KLVWAIRIDLHILDNGGNLVDAANIAALAS-------LLTFRR 167
E + AG +L + L ++D G + D IAA+A +L
Sbjct: 119 RSSIDIFMEVIQADAGTRLASLMAASLAVVDAGIPVRDI--IAAVAVGKADGVIVLDLNE 176
Query: 168 PECSLGGEDDLEVIVHP 184
PE + GE D+ V + P
Sbjct: 177 PE-DMWGEADMPVAMMP 192
>gi|62734004|gb|AAX96113.1| expressed protein [Oryza sativa Japonica Group]
Length = 165
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 18 FIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRD 74
F+E L +R D R P E R ++ GS+ V+LG T ++ + +++ P +
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 75 RPNEGTLSIFTEFSPMADPSFETGRPSESA 104
P+EG++++ P+ P GRP+E A
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRPGRPAEVA 119
>gi|361124853|gb|EHK96919.1| putative Exosome complex component rrp45 [Glarea lozoyensis
74030]
Length = 188
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQT 58
++NEK+F AL+ GIRIDGR E+R L ++FG E G +V+LG+T
Sbjct: 8 SLNEKQFFAKALNEGIRIDGRAFDEFRTLEVEFGDEFGVCDVRLGKT 54
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPN 77
L +G+R+DGR P E R + ++ G DGS+ V++G T I+ V G ++ + PN
Sbjct: 11 LDNGLRLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPN 70
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGL----------RESRAVDTESLC 127
L + +P + + PS +EL +++ L R S V E L
Sbjct: 71 RAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQ 130
Query: 128 VLAG-KLVWAIRIDLHILDNGGNLVDAANIAALA-------SLLTFRRPECSLGGEDDLE 179
AG +L + L ++D G + D IAA+A +L PE + GE D+
Sbjct: 131 ADAGTRLASLMAASLAVVDAGIPVRDL--IAAVAVGKADGVVVLDLNEPE-DMWGEADMP 187
Query: 180 VIVHP 184
V + P
Sbjct: 188 VAMMP 192
>gi|402587188|gb|EJW81123.1| 3' exoribonuclease, partial [Wuchereria bancrofti]
Length = 280
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 23/162 (14%)
Query: 34 PFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP-----YRDRPNEGTLSIFT 85
P +YR + ++ G +GS+ VQ+G T ++ V +L+ YR+R L+ F
Sbjct: 1 PLDYRPVIVQTGVLATTNGSARVQIGSTDLLIGVKAELISVESIAIYRNR-----LNFFV 55
Query: 86 EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILD 145
+ S A P F E A EL +D + + +L+ W + +D+ +L
Sbjct: 56 DCSANATPLFAGRGGDEFADELSAALDAAYDNNYVLPDLKKLILSPMHAWKLFVDIVLLQ 115
Query: 146 NGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEE 187
GN++DAA + A+L + E S +VIV P +E
Sbjct: 116 CDGNVIDAAGLGVKAAL---KDTEIS-------KVIVRPADE 147
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG- 66
L V + + I L G R+DGR P E R + ++ G DGSS V++G T I+ V G
Sbjct: 2 LQVQKPKLI---LDDGRRLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGP 58
Query: 67 -QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGL---------- 115
++ + PN TL + +P + ++ PS +EL +++ L
Sbjct: 59 REMHPRHLALPNRATLRVRYHMTPFSTDERKSPVPSRREIELSKVIREALESSILVEQFP 118
Query: 116 RESRAVDTESLCVLAG-KLVWAIRIDLHILDNGGNLVDAANIAALA-------SLLTFRR 167
R S V E + AG +L + L ++D G + D IAA+A +L
Sbjct: 119 RSSIDVFMEVIQADAGTRLASLMAASLAVVDAGIPVKDV--IAAVAVGKADGVVVLDLNE 176
Query: 168 PECSLGGEDDLEVIVHP 184
PE + GE D+ V + P
Sbjct: 177 PE-DMWGEADMPVAMLP 192
>gi|261335755|emb|CBH18749.1| exosome-associated protein 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 294
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES--RAV 121
V+G P D+P+EG L++ +A P F++ + A L R V R +R + +
Sbjct: 70 VSGVFGPPPSDQPDEGRLTV-----DVAAPFFQSHSTDQVAAAL-REVARFVRSTIISCM 123
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
D L ++ G+ W ++++L IL+ G L AA A +A++ P L D++E
Sbjct: 124 DLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPSGDEVE-- 181
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFF---SSESLLVIDPTHHEEAVMVGKMTATL-NANG 237
R L H +P+AVT G + +S ++D EE+V+ G +T L + NG
Sbjct: 182 -----SRR---LRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVLSDENG 233
Query: 238 DVCAIQ 243
+ +Q
Sbjct: 234 IITFVQ 239
>gi|74026302|ref|XP_829717.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|22797842|emb|CAD23610.1| exosome-associated protein 2 [Trypanosoma brucei]
gi|70835103|gb|EAN80605.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 294
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 64 VTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRES--RAV 121
V+G P D+P+EG L++ +A P F++ + A L R V R +R + +
Sbjct: 70 VSGVFGPPPSDQPDEGRLTV-----DVAAPFFQSHSTDQVAAAL-REVARFVRSTIISCM 123
Query: 122 DTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVI 181
D L ++ G+ W ++++L IL+ G L AA A +A++ P L D++E
Sbjct: 124 DLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRLPNGDEVE-- 181
Query: 182 VHPPEEREPLPLIIHHLPIAVTFGFF---SSESLLVIDPTHHEEAVMVGKMTATL-NANG 237
R L H +P+AVT G + +S ++D EE+V+ G +T L + NG
Sbjct: 182 -----SRR---LRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVLSDENG 233
Query: 238 DVCAIQ 243
+ +Q
Sbjct: 234 IITFVQ 239
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,328,954,061
Number of Sequences: 23463169
Number of extensions: 311757782
Number of successful extensions: 703008
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 412
Number of HSP's that attempted gapping in prelim test: 699955
Number of HSP's gapped (non-prelim): 1666
length of query: 465
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 319
effective length of database: 8,933,572,693
effective search space: 2849809689067
effective search space used: 2849809689067
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 79 (35.0 bits)