BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043337
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1
Length = 291
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 173/267 (64%), Gaps = 3/267 (1%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
++N K F+ +L G+R+DGR ++R L I+FG+E G +V G T +M +T ++ +P
Sbjct: 8 SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKP 67
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y DRP +G SI TE +P+A +FE GR S+ + + R++++ +R S A+DTESLC+++G
Sbjct: 68 YTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISG 127
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ W +R +H +++ GNLVDAA IA +A+L FRRPE ++ GE EV VHP EER P+
Sbjct: 128 QKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGE---EVTVHPVEERVPV 184
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL I H+PI VTF FF++ L ++D T EE + G MT TLN N +VC I K GG +
Sbjct: 185 PLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQIYKAGGIIID 244
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVE 278
S I+ C + A +A + I+ A++
Sbjct: 245 PSKIISCAKTAFDIAVSVCSVIQQALD 271
>sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2
SV=1
Length = 437
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ + +C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVFRCSKIAGVKVAEITELIQKALE 270
>sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1
Length = 438
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ GE EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGE---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ + +C ++A ++IT+ I+ A+E
Sbjct: 243 LKDQVFRCSKIAGVKVAEITELIQKALE 270
>sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3
Length = 439
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A ++IT+ I A+E
Sbjct: 243 LKDQVLRCSKIAGVKVAEITELILKALE 270
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1
Length = 440
Score = 228 bits (581), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 180/268 (67%), Gaps = 3/268 (1%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
L+ E+RF+ A+ R+DGR ++YR + I FG + G V+LG+T ++G V+ +LV
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIKISFGTDYGCCIVELGKTRVLGQVSCELVS 65
Query: 71 PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
P +R EG L E S MA P+FE GR S+ V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66 PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVA 125
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
G+ VW IR+DLH+L++ GN++DAA+IAA+ +L FRRP+ S+ G+ EV ++ EER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTLEERDP 182
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL IHH+PI V+F FF + L++DP+ EE VM G + +N + ++C IQ GG +
Sbjct: 183 VPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIML 242
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
L+ +++C ++A +IT+ I+ A+E
Sbjct: 243 LKDQVLRCSKIAGVKVVEITELIQKALE 270
>sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1
Length = 305
Score = 208 bits (529), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 162/282 (57%), Gaps = 16/282 (5%)
Query: 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFV 64
+A ++ +E +FI AL R+DGR+ ++R + I FG+E G V++G T + +
Sbjct: 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRI 60
Query: 65 TGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDT 123
+ Q+ QPY DRP EG I TE SPMA FE G + E V RI+++ +R S A+D
Sbjct: 61 SCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDV 120
Query: 124 ESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVH 183
E LC++AG WA+R D+H LD G +DA+ IA +A L+ F++P+ ++ GE ++IVH
Sbjct: 121 EGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE---QIIVH 177
Query: 184 PPEEREPLPLIIHHLPIAVTFGFF------------SSESLLVIDPTHHEEAVMVGKMTA 231
P EREP+PL I H+PI VTF FF ++ + +ID T EE + G +T
Sbjct: 178 PVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV 237
Query: 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKI 273
TLN N +V + K GG + +M+C A + IT +I
Sbjct: 238 TLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>sp|Q5JIR7|ECX2_PYRKO Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1633 PE=3
SV=1
Length = 272
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 162/259 (62%), Gaps = 12/259 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RIDGR+ +YR L IK + +GS+ V+LG T ++ + +L +P+ D P+ G
Sbjct: 19 LREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E+A+EL R+VDRG+RES+AVD E L ++ GKLV I I
Sbjct: 79 VITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+GGNL+DA+ I A+A+LL+ + P+ + E ++E++ +E EPLP ++H+
Sbjct: 139 DVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEIL----DEYEPLP--VNHV 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI VTF + +V+DP+ EE VM G++T T + G + A QK +M
Sbjct: 193 PIPVTFAKIGNS--IVVDPSLDEERVMDGRLTITTDETGHISAAQKGEAGAFKMEEVMYA 250
Query: 259 LRLASRMASDITKKIKDAV 277
L +A + ++I +K+ AV
Sbjct: 251 LEVALKKGNEIREKVLKAV 269
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1567 PE=3 SV=1
Length = 277
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 159/270 (58%), Gaps = 12/270 (4%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY 72
+ +I L RID R +YR + ++ G + +GS+ V+LG T ++ + L +P+
Sbjct: 12 RDYILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPF 71
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D PN G ++ E P+A P+FE G P E A+EL R++DRG+RESRA++ E + + GK
Sbjct: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGK 131
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPL 191
+V + ID+H+LD+ GNL+DA I A+A+LL R P+ E ++E++ EE+EPL
Sbjct: 132 IVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEIL----EEKEPL 187
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
P + +PI+VTF + LV+DPT EE +M G++T T + G + A+QK G
Sbjct: 188 P--VEKIPISVTFAKIG--NYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSEGGAFK 243
Query: 252 QSVIMQCLRLASRMASDITKKIKDAVETYN 281
+M + A + A +I K I +A+E N
Sbjct: 244 LEEVMYAVETAFKKAEEIRKIILNALEKAN 273
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1548 PE=3 SV=1
Length = 274
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 156/259 (60%), Gaps = 12/259 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR + I+ G + +GS+ V+LG T ++ + L +P+ D PN G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R+ DRG+RESRA++ E + ++ GK+V + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+ GNL+DA IA++A+LL + P+ E ++E++ EE+EPLP + +
Sbjct: 139 DVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEETGEVEIL----EEKEPLP--VERI 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI VTF ++LV+DP+ EE VM G++T T + G + A+QK G +M
Sbjct: 193 PIPVTFAKIG--NILVVDPSLEEELVMDGRLTVTTDETGHISAVQKGEGGAFKLEEVMYA 250
Query: 259 LRLASRMASDITKKIKDAV 277
+ A + A +I K + +A+
Sbjct: 251 VETAFKKAEEIRKIVLEAI 269
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0380 PE=3 SV=1
Length = 267
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 157/256 (61%), Gaps = 11/256 (4%)
Query: 22 ALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNE 78
A+ +G RIDGR+ E+R + ++ G + +GS+ V+LG T ++ V ++ +PY D PNE
Sbjct: 17 AIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNE 76
Query: 79 GTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIR 138
G L++ E P+ADPSFE G P E+A+EL R+VDRG+RES +D E LC+ G+ W
Sbjct: 77 GALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTF 136
Query: 139 IDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHL 198
+D+H+LD+ GNL DA+ I ++++L P+ + +D++EV+ E + PL I+
Sbjct: 137 VDIHVLDHDGNLFDASMIGSVSALSITEVPKAEV-VDDEVEVM-----EEDTEPLAINDF 190
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
PI+VT L++DP EE +M ++T T+ +G+VCA+QK + ++
Sbjct: 191 PISVTIAKVG--EYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQKGELGDFPEHLLEDA 248
Query: 259 LRLASRMASDITKKIK 274
+ LA++ A ++ + +K
Sbjct: 249 IDLATKKAEEVRRTVK 264
>sp|C5A2B8|ECX2_THEGJ Probable exosome complex exonuclease 2 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2035 PE=3 SV=1
Length = 273
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 155/258 (60%), Gaps = 10/258 (3%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RIDGR+ EYR + IK G + +GS+ V+LG T ++ + + +P+ D P+ G
Sbjct: 19 LKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RES+AV+ E L ++ GKLV + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLP 199
D+H+LD+ GNL DA +AA+A+L+T + P+ E+ E+I +E EPLP + H+P
Sbjct: 139 DVHVLDHDGNLFDATGLAAMAALMTTKIPKVEY-NEETGEII--KLDEYEPLP--VKHVP 193
Query: 200 IAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCL 259
I VTF S +++DP EE VM ++T T + G + A+QK G +M +
Sbjct: 194 IPVTFAKIGSS--IIVDPNLDEETVMDSRLTITTDETGHISAVQKGEGGSFKLEEVMYAI 251
Query: 260 RLASRMASDITKKIKDAV 277
A + A ++ K + +AV
Sbjct: 252 DTALKKADELRKILLEAV 269
>sp|B6YSE7|ECX2_THEON Probable exosome complex exonuclease 2 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0031 PE=3 SV=1
Length = 272
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 157/263 (59%), Gaps = 12/263 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L G R+DGR+ +YR L IK + +GS+ V+LG T ++ + + +P+ D
Sbjct: 15 ILALLKEGKRVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDL 74
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P +G ++ E P+A PSFE G P E A+EL R+VDRG+RES AV+ E L ++ GKLV
Sbjct: 75 PEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVR 134
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLI 194
+ ID+H+LD+ GNL+DA+ I A+A+L++ + P+ E +++++ +E EPLP
Sbjct: 135 VVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQIL----DEYEPLP-- 188
Query: 195 IHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSV 254
+ +PI VT L++DP EE VM G++T T + NG + ++QK G
Sbjct: 189 VSKMPIPVTIAKVGGN--LLVDPNLDEELVMDGRITITTDENGMISSVQKSEGGSFKLEE 246
Query: 255 IMQCLRLASRMASDITKKIKDAV 277
+M + LA A++I +K+ +AV
Sbjct: 247 VMYAIDLALTKAAEIREKVLEAV 269
>sp|Q9V118|ECX2_PYRAB Probable exosome complex exonuclease 2 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06110 PE=1 SV=1
Length = 274
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 156/260 (60%), Gaps = 12/260 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G RID R +YR + I+ G + +GS+ V+LG T ++ + L +P+ D PN G
Sbjct: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
++ E P+A P+FE G P E A+EL R++DRG+RES+A++ E + ++ GK+V + I
Sbjct: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED-DLEVIVHPPEEREPLPLIIHHL 198
D+H+LD+ GNL+DA IAA+A+LL R P+ E ++E + +E EPLP + +
Sbjct: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETL----DETEPLP--VEKI 192
Query: 199 PIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQC 258
P+ VTF ++LV+DP+ EE VM GK+T T + G + A+QK G +M
Sbjct: 193 PVPVTFAKIG--NILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYA 250
Query: 259 LRLASRMASDITKKIKDAVE 278
+ A + A +I K I +AVE
Sbjct: 251 VETAFKKAEEIRKLILEAVE 270
>sp|Q9HIP1|ECX2_THEAC Probable exosome complex exonuclease 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1294 PE=3 SV=2
Length = 260
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 149/263 (56%), Gaps = 23/263 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K +I + + G RIDGR P E+R+L+I R +GS+ V LG T ++ V + +P+
Sbjct: 14 KNYILSTMKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPF 73
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G L+ E P+A PSFE G P++ A+E+ R+VDRG+RES+ + E L + GK
Sbjct: 74 PDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW + +D+++LD GNL+DA+ IAA+A+L P GGED
Sbjct: 134 KVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGED--------------FK 179
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L + PI+VT LV DP+ E+ + G++T T +G + A+QK G +
Sbjct: 180 LPVSSTPISVT--MVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK----GEIG 233
Query: 253 SVIMQCLRLASRMASDITKKIKD 275
+ ++ ++ A +M+ ++ KK+++
Sbjct: 234 AFTVEDVKKAVKMSLEVGKKLRE 256
>sp|O26778|ECX2_METTH Probable exosome complex exonuclease 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_682 PE=1 SV=1
Length = 271
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 12/227 (5%)
Query: 28 RIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84
RIDGR+ E+R +SI+ G + +GSS V+LG T I+ V Q+ +P+ D P G +
Sbjct: 25 RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84
Query: 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHIL 144
+E PMA P+FE G P E +VEL R+VDR +RESR +D E LC++ G VW + +DLHI+
Sbjct: 85 SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHII 144
Query: 145 DNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTF 204
D GNL DAA +A +A+LL R P + +D EV+++ E+ +PLP ++ + TF
Sbjct: 145 DYDGNLFDAAVLATVAALLDTRIPAAEV---EDGEVVIN-REKMQPLP--VNRKALMCTF 198
Query: 205 GFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
+E +V+DP+ EE ++ +++ + G +CA+QK GGEG L
Sbjct: 199 AKIGNE--IVLDPSLEEEDILTARISIGVTEEGSICAMQK-GGEGPL 242
>sp|Q8TGX5|ECX2_METAC Probable exosome complex exonuclease 2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1776 PE=3 SV=1
Length = 266
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 148/259 (57%), Gaps = 20/259 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + G R DGR ++R L ++ + +GS++V LG T ++ V Q P
Sbjct: 12 KKDYIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTP 71
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D +EG + E +P+A P FE G P E A+E+ R+VDRG+RES A+D + LC+ G
Sbjct: 72 FPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVG 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+H+L++ GN++DA+ +AA+A+L+T P G GED
Sbjct: 132 ESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGED-------------- 177
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL + +P+ +T S+ L++DP+ EEAV K+T +++G V +QK G +
Sbjct: 178 VPLAMKEMPVGITIAKIGSK--LMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGISPL 235
Query: 251 LQSVIMQCLRLASRMASDI 269
++ + + + LA A+++
Sbjct: 236 TEAELFEAIDLALEKAAEL 254
>sp|Q8PTT7|ECX2_METMA Probable exosome complex exonuclease 2 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2624 PE=3 SV=1
Length = 266
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 148/259 (57%), Gaps = 20/259 (7%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLVQP 71
+K +I + R DGR ++R+L ++ + +GS++V LG T ++ V Q P
Sbjct: 12 KKDYIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTP 71
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D +EG + E +P+A P FE G P E A+E+ R+VDRG+RES A+D + LC+ G
Sbjct: 72 FPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVG 131
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPPEEREP 190
+ VW + ID+HIL+N GN++DA+ +AA+A+L+T P G GE+
Sbjct: 132 ESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGEN-------------- 177
Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
+PL + +P+ +T S+ L++DP+ EEAV K+T +++G V +QK G +
Sbjct: 178 VPLAMKEMPVGITLAKIGSK--LMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGPVPL 235
Query: 251 LQSVIMQCLRLASRMASDI 269
++ + + + +A A++I
Sbjct: 236 TEAELFEAIDMAIEKAAEI 254
>sp|Q0W2Y7|ECX2_UNCMA Probable exosome complex exonuclease 2 OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_09920 PE=3 SV=1
Length = 260
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 151/263 (57%), Gaps = 18/263 (6%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
++ +I + + G R DGR E+R +S++ G + +GS+ V++G + ++ V Q +P
Sbjct: 10 KRDYIYSLANQGDRADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEP 69
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D P+ G + E P+A P+FE+G P E A+EL R+VDRG+RES A+D LC+ +G
Sbjct: 70 FPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRGVRESGAIDLSKLCIESG 129
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
+ VW + ID+H+LD+ GNL+DAA++ A+A+L + P G +D++ L
Sbjct: 130 QKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDVK-----------L 178
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
PL + +PI VT + +++DP+ EE+V K+T N G + +QK G +
Sbjct: 179 PL--NDVPIGVT--AVNIGGAIMLDPSLDEESVAPCKLTVITNKEGAISGMQKSGVGTLT 234
Query: 252 QSVIMQCLRLASRMASDITKKIK 274
I +RLA A+ + +K++
Sbjct: 235 PDQINHIIRLAKEKANVLREKLE 257
>sp|Q975G9|ECX2_SULTO Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04420 PE=3 SV=1
Length = 275
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 151/262 (57%), Gaps = 14/262 (5%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I AL GIR+DGR +YR +S+ + +GS+ V+LG T ++ V + +P
Sbjct: 15 KKESILNALERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
+ D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+AVD L ++ G
Sbjct: 75 FPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW +D+++LD GGN++DA +AA+A+L + P+ + G D++++I + P+
Sbjct: 135 KKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEG-DNVKIIKEEKTDVTPI 193
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
+ + +A G + LV+DP+ EE++ K++ + +G + +QK
Sbjct: 194 AYPVVTVTVA-KIGKY-----LVVDPSLDEESIADVKISFSYVQDGRIVGMQKSN----F 243
Query: 252 QSVIMQCLRLASRMASDITKKI 273
S+ +Q + +A +A ++K+
Sbjct: 244 GSLSLQEVDVAESLARSASQKL 265
>sp|Q8ZVN0|ECX2_PYRAE Probable exosome complex exonuclease 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2206 PE=3 SV=1
Length = 274
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 11/263 (4%)
Query: 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR 75
I L++ R+DGR P + R + I G DGS+EV+LG+TH++ V L QP+ D
Sbjct: 20 IRRLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDA 79
Query: 76 PNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVW 135
P+EG L + E P A P E G P E A+EL R+VDRG+R VD + L V GK +
Sbjct: 80 PDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGK-AY 138
Query: 136 AIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLII 195
+ IDL+++++ GNL+D AN+A++A+L + P +D+ V+ + PLP+ I
Sbjct: 139 VLWIDLYVINDDGNLIDVANLASVAALKNTQLPVVV---KDEAGVVKLDRNNKAPLPVDI 195
Query: 196 HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVI 255
PIAV+ G ++L +DPT EE + G++T T + + + A QK G QS I
Sbjct: 196 SKAPIAVSVGKIG--NVLFLDPTFEEELSLDGRITFTFSED-KIVAAQKTLGY-FTQSEI 251
Query: 256 MQCLRLASRMASDITKKIKDAVE 278
L LA R + + +K A++
Sbjct: 252 EAALNLALRGRDRLLEALKSALK 274
>sp|Q97BZ4|ECX2_THEVO Probable exosome complex exonuclease 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0311 PE=3 SV=1
Length = 260
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 147/263 (55%), Gaps = 23/263 (8%)
Query: 16 KRFIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTGQLVQPY 72
K +I T + G RIDGR P E+R+++I R +GS+ V LG+T ++ V + +P+
Sbjct: 14 KNYILTTMKGGKRIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEPF 73
Query: 73 RDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGK 132
D P++G L+ E P+A PSFE G P++ A+E+ R+VDRG+RES+ + + L + GK
Sbjct: 74 PDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGK 133
Query: 133 LVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLP 192
VW + +D+++LD GNL+DA IAA+++L P GGED
Sbjct: 134 KVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPASREGGED--------------FK 179
Query: 193 LIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQ 252
L + + PI+VT LV DP+ E+ + G++T T +G + A+QK G GV
Sbjct: 180 LPVVNTPISVT--MVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQK-GEIGVFT 236
Query: 253 SVIMQCLRLASRMASDITKKIKD 275
+ ++ A +M+ + K I++
Sbjct: 237 ---LDDVKKAIKMSLKVGKNIRE 256
>sp|Q9UXC0|ECX2_SULSO Probable exosome complex exonuclease 2 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0732 PE=1 SV=1
Length = 275
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 144/261 (55%), Gaps = 17/261 (6%)
Query: 1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ 57
M + +N + + +K I + GIR DGR +YR LSI + DGS+ V+LG
Sbjct: 1 MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT 60
Query: 58 THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
T ++ ++ +PY D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+
Sbjct: 61 TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD 120
Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL---TFRRPECSLGG 174
S+A+D L + GK VW + +D+++LD GGN++DA +A++A+L ++ + S G
Sbjct: 121 SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNG- 179
Query: 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN 234
+ V+ E LPL + P+ VT + LV+DP EE++M K++ +
Sbjct: 180 -----ISVNKNEVVGKLPL---NYPV-VTISVAKVDKYLVVDPDLDEESIMDAKISFSYT 230
Query: 235 ANGDVCAIQKPG-GEGVLQSV 254
+ + IQK G G LQ +
Sbjct: 231 PDLKIVGIQKSGKGSMSLQDI 251
>sp|C3NHC2|ECX2_SULIN Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1441 PE=3
SV=1
Length = 275
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>sp|C3NED0|ECX2_SULIY Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1402 PE=3
SV=1
Length = 275
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>sp|C3MQ47|ECX2_SULIL Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=LS215_1502 PE=3 SV=1
Length = 275
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>sp|C4KHE3|ECX2_SULIK Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=M164_1401 PE=3 SV=1
Length = 275
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>sp|C3MVG5|ECX2_SULIM Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=M1425_1407 PE=3 SV=1
Length = 275
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>sp|C3N5R4|ECX2_SULIA Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.27) GN=M1627_1457 PE=3 SV=1
Length = 275
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP 71
+K I + G R DGR +YR LSI + DGS+ V+LG T ++ ++ +P
Sbjct: 15 KKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP 74
Query: 72 YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
Y D PN+G L + E P+A +FE G P E+A+EL R+VDR LR+S+A+D L + G
Sbjct: 75 YEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPG 134
Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
K VW + +D+++LD GGN++DA +A++A+L + + +D V+ E L
Sbjct: 135 KSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVE---QDSNGFRVNKNEVVGKL 191
Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGV 250
PL +H P+ VT + L++DP EE++M K++ + + + IQK G G
Sbjct: 192 PL--NH-PV-VTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMS 247
Query: 251 LQSV 254
LQ +
Sbjct: 248 LQDI 251
>sp|Q9YC05|ECX2_AERPE Probable exosome complex exonuclease 2 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1445 PE=3 SV=1
Length = 276
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 128/230 (55%), Gaps = 15/230 (6%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79
L G R R+ R + I+ G + +GS+ V+LG+T ++ V + P++D PN+G
Sbjct: 23 LRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQG 82
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRI 139
L++ EF P+A P FE G P E+A+EL R+VDR LRE AVD ESL + G+ VW + +
Sbjct: 83 VLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWV 142
Query: 140 DLHILDNGGNLVDAANIAALASLLTFRRP---ECSLGGEDDLEVIVHPPEEREPLPLIIH 196
DL+I+D+ GNL DA+ +A +A LLT R P E G E+I+ E E L +
Sbjct: 143 DLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETG-----EIIISKEGEGEELKVKTR 197
Query: 197 HLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG 246
+ + + +V+DP EEAV ++ ++ NG + +QK G
Sbjct: 198 VVTVTTA----KIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTG 243
>sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1
Length = 276
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + P+ F +G P E A + + + S+ + E LC+
Sbjct: 67 AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKLVW + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A ++ K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 272
>sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1
Length = 276
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 133/269 (49%), Gaps = 9/269 (3%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ + +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P++G + + SP+ F +G P E A + + + S+ + E LC+
Sbjct: 67 GAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
+GKL W + DL L++ GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L I P+A +F F ++LL++DPT EE + G +T ++ G +C + KPGG
Sbjct: 183 KKSCLNIRTHPVATSFAVF-DDTLLIVDPTEEEEHLATGTLTVVMDEEGRLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAV 277
G+ + + C+ A ++ KK+ D V
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEV-KKLMDEV 269
>sp|Q9D753|EXOS8_MOUSE Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=2 SV=1
Length = 276
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 8/271 (2%)
Query: 12 TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL 68
TV + L R DGR E+R ++ G DGS+ V+LG T ++ V +
Sbjct: 7 TVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEF 66
Query: 69 VQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCV 128
P D P+ G + + P+ F TG P E A + + + S+ + E LC+
Sbjct: 67 AAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCI 126
Query: 129 LAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEER 188
GKL W + DL LD GN++DA A LA+L + PE ++ E L + +
Sbjct: 127 SPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEV----NLK 182
Query: 189 EPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGE 248
+ L + P+A +F F ++LL++DPT EE + G +T + +G +C + KPGG
Sbjct: 183 KKSYLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGS 241
Query: 249 GVLQSVIMQCLRLASRMASDITKKIKDAVET 279
G+ + + C+ A +++K + + +++
Sbjct: 242 GLTGAKLQDCMSRAVTRHKEVSKLLDEVIQS 272
>sp|O29756|ECX2_ARCFU Probable exosome complex exonuclease 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0494 PE=1 SV=1
Length = 259
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 152/270 (56%), Gaps = 21/270 (7%)
Query: 11 LTVNEKR-FIETALSSGIRIDGRNPFEYRKLSI---KFGREDGSSEVQLGQTHIMGFVTG 66
+ V+ KR ++ + L RIDGR E+RK+ I + +GS+ V+LG T ++ V
Sbjct: 5 ILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKM 64
Query: 67 QLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESL 126
Q +PY D P+ G + + E P+A P+FE G P E+++EL R+VDRG+RES AVD L
Sbjct: 65 QPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKL 124
Query: 127 CVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLG-GEDDLEVIVHPP 185
+ G+ VW + +D+H LD+ GNL+DA+ +AA+A+L+ + P GED L
Sbjct: 125 VIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYL------- 177
Query: 186 EEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245
LP + LP++VT ++ L +DP+ E +V +T T + + +V A+QK
Sbjct: 178 -----LP--VRDLPVSVTSLIVGNKYL--VDPSREEMSVGDTTLTITTDKDDNVVAMQKS 228
Query: 246 GGEGVLQSVIMQCLRLASRMASDITKKIKD 275
GG + + + + L ++ A + +K K+
Sbjct: 229 GGYLLDEKLFDELLDVSINCARKLREKFKE 258
>sp|Q9D0M0|EXOS7_MOUSE Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2
SV=2
Length = 291
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD SLC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLRSLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGCRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3
Length = 291
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 12/243 (4%)
Query: 11 LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQ 67
L+ EK +I + +R+DGR +YR + ++ GS+ V+LG T I+ V +
Sbjct: 6 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 65
Query: 68 LVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLC 127
+ P ++PNEG L F + S A P FE + E+ + R +VD ++LC
Sbjct: 66 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 125
Query: 128 VLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSL----GGEDDLEVIVH 183
+ + W + +D+ +L+ GGNL DA +IA A+L R P + G D+E+
Sbjct: 126 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDD 185
Query: 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243
P + + L + ++P VT V+D T EEA + + ++ + G V ++
Sbjct: 186 P---YDCIRLSVENVPCIVTLCKIGYRH--VVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 244 KPG 246
K G
Sbjct: 241 KVG 243
>sp|Q10205|RRP43_SCHPO Exosome complex component rrp43 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1
Length = 270
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 127/253 (50%), Gaps = 9/253 (3%)
Query: 13 VNEKRFIETALSSGIRIDGRNPFEYRKLSIK---FGREDGSSEVQLGQTHIMGFVTGQLV 69
+ ++++ L+ +R DGR+ E+R++ I +GS+ ++ G+ + + ++
Sbjct: 20 ITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIA 79
Query: 70 QPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVL 129
+P+ + PNEG + E SP+ F+ G PS+ A + + + + L++S ++ +SLC+
Sbjct: 80 EPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIF 139
Query: 130 AGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189
K W + D+ L+ G+ D A A A+L T + P + ++DLE ++
Sbjct: 140 EKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLP--TAVWDEDLERVICASTLTR 197
Query: 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEG 249
P+ L +F + + L+ DPT EE + +T LN++ ++ I K GG
Sbjct: 198 PVQLSTE----VRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLGGTH 253
Query: 250 VLQSVIMQCLRLA 262
+ ++ +C+ +A
Sbjct: 254 IQPLLLKKCIEVA 266
>sp|Q54VM4|EXOS7_DICDI Putative exosome complex exonuclease RRP42 OS=Dictyostelium
discoideum GN=exosc7 PE=3 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 132/309 (42%), Gaps = 63/309 (20%)
Query: 10 RLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQT-------- 58
+++ +E FI+ + + IR DGRN +YR +I+ G +GS+ V+L QT
Sbjct: 3 KISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVKA 62
Query: 59 ---HIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESA-VELGRIVDRG 114
HI +T L Q D S+ P A P FE G+ SE +EL + ++R
Sbjct: 63 EITHIQSEITSNLQQS--DTSKRLVFSV--NCCPSASPEFE-GKGSEFLNIELSKQLERL 117
Query: 115 LRESRAV----------------------------------------DTESLCVLAGKLV 134
+ D +++GK
Sbjct: 118 YSHPNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYY 177
Query: 135 WAIRIDLHILDNGGNLVDAANIAALASLLTFRRPEC-SLGGEDDLEVIVHPPEEREPLPL 193
W + +D +LD+ GNL DA +IA ++L R P ++ GE + + + L L
Sbjct: 178 WTLYVDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSL 237
Query: 194 IIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQS 253
I ++PI VT ++ VID T EE M ++T +N+ ++C+IQK G +G+ +
Sbjct: 238 SIDNVPICVTLTKIGNQ--FVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPT 295
Query: 254 VIMQCLRLA 262
I Q + A
Sbjct: 296 TINQMINTA 304
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPN 77
L +G+R+DGR P E R + I+ G DGS+ ++G T ++ V G ++ + P+
Sbjct: 11 LDNGLRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPD 70
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD----------TESLC 127
L + +P + + PS +EL +++ L + V+ E L
Sbjct: 71 RAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQ 130
Query: 128 VLAG-KLVWAIRIDLHILDNGGNLVDAANIAALAS-------LLTFRRPECSLGGEDDLE 179
AG +LV + + + D G + D IA +A +L PE + GE D+
Sbjct: 131 ADAGTRLVSLMAASMALADAGIPMRDL--IAGVAVGKADGVLVLDLNEPE-DMWGEADMP 187
Query: 180 VIVHP 184
V + P
Sbjct: 188 VAMMP 192
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG-QLVQP-YRDRPNEG 79
+G RIDGR +E RK+ ++ G DGS+ ++ G+ I+ V G + + P + RP+
Sbjct: 14 NGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTA 73
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIV 111
L + +P + + P +VE+ +++
Sbjct: 74 VLRVRYNMAPFSVEERKKPGPDRRSVEISKVI 105
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 26 GIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPNEGT 80
G+R+DGR P E R L I+ G R DGS+ ++LG I+ V G +L ++ +P+
Sbjct: 13 GLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAV 72
Query: 81 LSIFTEFSPMADPSFETGRPSESAVELGRIVDRGL 115
+ +P + + P ++E+ ++ L
Sbjct: 73 VRFRYNMAPFSVDERKRPGPDRRSIEISKLSKEAL 107
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPNEG 79
+G RIDGR +E R + +K G +GS+ ++ G+ I+ V G +L + RP+
Sbjct: 14 NGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRA 73
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGL 115
L + +P + + P ++E+ +++ L
Sbjct: 74 ILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGAL 109
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG-QLVQP-YRDRPNEG 79
+G RIDGR +E R + ++ G DGS+ V+ G+ I+ V G + + P + RP+
Sbjct: 14 NGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRA 73
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIV 111
L + +P + + P +VE+ +++
Sbjct: 74 ILRVRYNMAPFSVEERKKPGPDRRSVEISKVI 105
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG-QLVQP-YRDRPNEG 79
+G RIDGR +E R + ++ G DGS+ V+ G+ ++ V G + + P + RP+
Sbjct: 14 NGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRA 73
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIV 111
L + +P + + P +VE+ +++
Sbjct: 74 ILRVRYNMAPFSVEERKKPGPDRRSVEISKVI 105
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPN 77
L G R DGR P E R + I+ G DGS+ ++G T + V G ++ + P+
Sbjct: 14 LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPD 73
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVD 122
L + +P + + PS +EL +++ L + V+
Sbjct: 74 RAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVE 118
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPN 77
L +G+R DGR E R + I+ G DGS+ ++G T ++ V G ++ + P+
Sbjct: 11 LENGLRTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPD 70
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAI 137
+ +L + +P + + PS +EL +++ RE A+++ L L + V I
Sbjct: 71 KASLRVRYHMTPFSTDERKNPAPSRREIELSKVI----RE--ALESTILLNLFPRTVIDI 124
Query: 138 RIDLHILDNGGNLV 151
+++ D G LV
Sbjct: 125 FMEVLQADAGTRLV 138
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPNEG 79
+G RIDGR +E R + ++ G +GS+ ++ G+ I+ V G +L + RP+
Sbjct: 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRA 73
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGL 115
L + +P + + P ++E+ +++ L
Sbjct: 74 ILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGAL 109
>sp|Q6A7P6|PNP_PROAC Polyribonucleotide nucleotidyltransferase OS=Propionibacterium
acnes (strain KPA171202 / DSM 16379) GN=pnp PE=3 SV=1
Length = 733
Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVT 65
L G+RIDGR P + R LS + G R GS+ Q G+T I+G T
Sbjct: 335 LDEGVRIDGRGPRDIRSLSAEVGIIPRVHGSALFQRGETQILGVST 380
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG-QLVQP-YRDRPNEG 79
+G R+DGR +E R + +K G +GS+ ++ G+ I+ V G + + P + RP+
Sbjct: 14 NGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRA 73
Query: 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIV 111
L + +P + + P ++E+ +++
Sbjct: 74 ILRVRYNMAPFSVEERKKPGPDRRSIEISKVI 105
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 23 LSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPN 77
+ G R DGR P + R + ++ G DGS+ V+ G+T ++ V G + Q + P+
Sbjct: 12 IRDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPD 71
Query: 78 EGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGL 115
L + +P + ++ PS +EL ++V L
Sbjct: 72 RAALRVRYHMAPFSTDERKSPAPSRREIELSKVVREAL 109
>sp|Q485K0|CHEB_COLP3 Chemotaxis response regulator protein-glutamate methylesterase
OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
GN=cheB PE=3 SV=1
Length = 379
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 171 SLGGEDDLEVIVHPPEEREPLPLII-HHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKM 229
S GG L+ I+ EE PLP+II H+P A T F S + L K+
Sbjct: 197 STGGPVALQKILVQLEENFPLPIIIVQHMPAAFTAAFASRLNSLC-------------KI 243
Query: 230 TATLNANGDV----CAIQKPGGEGVLQS 253
+ A+GDV CA PGG +L S
Sbjct: 244 SIKEAADGDVLKPGCAYLAPGGRQMLIS 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,828,166
Number of Sequences: 539616
Number of extensions: 7533756
Number of successful extensions: 17805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 17634
Number of HSP's gapped (non-prelim): 249
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)