Query 043337
Match_columns 465
No_of_seqs 204 out of 1199
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp8_A Exosome complex compone 100.0 5.5E-56 1.9E-60 446.0 29.8 280 5-287 1-293 (305)
2 2nn6_A Polymyositis/scleroderm 100.0 1.2E-54 4E-59 445.5 30.7 279 5-286 17-295 (358)
3 3m7n_G Probable exosome comple 100.0 6.5E-53 2.2E-57 414.7 30.5 252 9-275 4-258 (259)
4 2po1_B Probable exosome comple 100.0 3E-52 1E-56 413.6 33.5 265 8-279 7-274 (277)
5 2nn6_E Exosome complex exonucl 100.0 1.4E-53 4.8E-58 428.8 21.9 273 8-282 17-293 (305)
6 2je6_A RRP42, exosome complex 100.0 4E-52 1.4E-56 412.3 29.9 269 3-278 5-276 (277)
7 2nn6_C Exosome complex exonucl 100.0 3.3E-52 1.1E-56 412.8 28.3 267 8-279 5-274 (278)
8 2wnr_A Probable exosome comple 100.0 2.5E-51 8.7E-56 405.3 29.8 264 7-278 4-270 (271)
9 2wnr_B Probable exosome comple 100.0 1.4E-43 4.7E-48 344.6 29.9 229 14-280 3-237 (240)
10 2nn6_B Exosome complex exonucl 100.0 7.6E-43 2.6E-47 341.2 28.8 232 15-284 4-243 (249)
11 2po1_A Probable exosome comple 100.0 5.2E-42 1.8E-46 335.3 30.1 229 20-286 9-243 (249)
12 2je6_B RRP41, exosome complex 100.0 6.9E-42 2.4E-46 334.5 29.7 225 23-285 16-246 (250)
13 3b4t_A Ribonuclease PH; RNAse, 100.0 1.2E-41 4.2E-46 335.0 29.8 231 25-279 4-244 (262)
14 2wp8_B Exosome complex compone 100.0 1.1E-41 3.7E-46 332.4 26.6 222 23-283 8-238 (246)
15 3m7n_D Probable exosome comple 100.0 1.9E-41 6.5E-46 333.5 27.4 221 22-280 11-240 (258)
16 3dd6_A Ribonuclease PH; exorib 100.0 3.7E-41 1.3E-45 330.9 28.3 232 24-280 8-250 (255)
17 1r6l_A Ribonuclease PH; beta-a 100.0 8.5E-41 2.9E-45 324.4 28.4 227 27-278 2-238 (239)
18 1oys_A Ribonuclease PH; transf 100.0 2.6E-41 8.8E-46 329.5 24.1 231 27-281 1-241 (245)
19 1udn_A Ribonuclease PH, RNAse 100.0 8E-41 2.7E-45 328.1 26.8 228 27-279 1-238 (255)
20 2nn6_F MTR3, exosome component 100.0 3E-41 1E-45 334.0 18.4 244 2-286 4-268 (272)
21 2nn6_D Exosome complex exonucl 100.0 4.6E-40 1.6E-44 319.4 26.1 216 20-280 9-233 (237)
22 3hkm_A OS03G0854200 protein; R 100.0 5.4E-39 1.8E-43 314.0 22.9 212 25-280 2-233 (246)
23 3u1k_A Polyribonucleotide nucl 100.0 1.8E-34 6.2E-39 313.8 26.2 226 17-279 308-556 (630)
24 3cdi_A Polynucleotide phosphor 100.0 1.4E-34 4.7E-39 318.8 23.8 240 11-285 303-555 (723)
25 3gme_A Polyribonucleotide nucl 100.0 4.5E-33 1.5E-37 297.8 26.9 231 14-279 301-543 (549)
26 1e3p_A Guanosine pentaphosphat 100.0 8.6E-33 3E-37 305.6 29.3 232 14-280 341-589 (757)
27 4aid_A Polyribonucleotide nucl 100.0 9.4E-33 3.2E-37 303.3 22.0 227 19-280 322-560 (726)
28 3u1k_A Polyribonucleotide nucl 100.0 8.8E-31 3E-35 284.8 24.4 246 36-331 13-288 (630)
29 3krn_A Protein C14A4.5, confir 100.0 6.6E-34 2.2E-38 273.9 -0.7 199 34-280 2-208 (222)
30 3cdi_A Polynucleotide phosphor 100.0 2.7E-30 9.1E-35 284.8 20.9 243 38-330 20-289 (723)
31 3gme_A Polyribonucleotide nucl 100.0 8.4E-29 2.9E-33 264.8 21.6 246 36-331 12-284 (549)
32 4aid_A Polyribonucleotide nucl 100.0 3.4E-28 1.2E-32 267.2 24.5 244 36-331 26-297 (726)
33 1e3p_A Guanosine pentaphosphat 99.9 3.2E-26 1.1E-30 253.2 26.1 246 37-330 36-325 (757)
34 1whu_A Polynucleotide phosphor 82.8 0.81 2.8E-05 38.1 3.2 16 23-38 88-103 (104)
35 2k9i_A Plasmid PRN1, complete 23.8 58 0.002 22.7 3.0 37 249-285 15-51 (55)
No 1
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-56 Score=446.00 Aligned_cols=280 Identities=39% Similarity=0.673 Sum_probs=237.4
Q ss_pred ccCCCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecCCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEE
Q 043337 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84 (465)
Q Consensus 5 m~~~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~ 84 (465)
|++++.+|..|+.|++++|++|+|+|||.++|+|+|.|++|.++|||+|++|+|+|+|+|++++..|..++|++|++.++
T Consensus 1 m~~~~~~s~~e~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~~~~~ 80 (305)
T 2wp8_A 1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVIS 80 (305)
T ss_dssp ------CCHHHHHHHHHHHTTTCCTTSCCTTCCCCEEEEECSSTTEEEEEETTEEEEEEEEEEEC-CCSSCTTCCEEEEE
T ss_pred CCCccccCcCHHHHHHHHHhhCCCCCCCCCcccCCeEEEEcCCCcEEEEEECCeEEEEEEeccccCCcccCCCCcEEEEE
Confidence 77899999999999999999999999999999999999999999999999999999999999988888778999999999
Q ss_pred EEeCCCCCCCccCCCCC-hhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHh
Q 043337 85 TEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL 163 (465)
Q Consensus 85 Vd~sp~as~~~~~g~~s-e~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~ 163 (465)
|+|+|++.+.|++|+++ +++++++++|+|+|+++.+||+++|||+|++++|+|+|+++||++|||++||+++|+++||+
T Consensus 81 ve~~~~~~~~~~~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~ 160 (305)
T 2wp8_A 81 TEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLM 160 (305)
T ss_dssp ECCC----------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred EEECCCCCccccCCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999888898 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEEC--------Cc----cEEEEcCCHHHHHcCcceEEE
Q 043337 164 TFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFS--------SE----SLLVIDPTHHEEAVMVGKMTA 231 (465)
Q Consensus 164 da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~--------~~----~~iLvDPT~~EE~~s~~~LtV 231 (465)
++++|.+.+.+ ..+.+++.+++++.||.|+++|++||||+++ ++ ..+|+|||.+||..+++.++|
T Consensus 161 ~a~iP~~~~~~---~~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~V 237 (305)
T 2wp8_A 161 HFKKPDITVHG---EQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV 237 (305)
T ss_dssp HCEECCCBCTT---SSCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEE
T ss_pred HhCCCeEEecC---CceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEE
Confidence 99999988763 2478888888999999999999999999997 21 389999999999999999999
Q ss_pred EEcCCCCEEEEEccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 043337 232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALR 287 (465)
Q Consensus 232 a~~~~g~I~~i~k~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~~~ 287 (465)
+++.+|+||.+++.|+..++.++|.+|+++|.+++++|+++|+++++++..+|..+
T Consensus 238 a~~~~g~i~~l~~~g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~~~ 293 (305)
T 2wp8_A 238 TLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNKY 293 (305)
T ss_dssp EECTTSEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999977899999999999999999999999999999987777553
No 2
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.2e-54 Score=445.46 Aligned_cols=279 Identities=42% Similarity=0.758 Sum_probs=261.2
Q ss_pred ccCCCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecCCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEE
Q 043337 5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84 (465)
Q Consensus 5 m~~~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~ 84 (465)
|.+.+.+|..|+.|++++|++++|+|||.++|+|+|.|++|.|+|||+|++|+|+|+|+|++++..|..++|++|+|.++
T Consensus 17 ~~~~~~~s~~e~~~i~~~L~~g~R~DGR~~~e~R~i~ie~g~A~GSa~v~~G~T~VL~tV~~e~~~p~~~~~~~g~l~~~ 96 (358)
T 2nn6_A 17 HMKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFN 96 (358)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTCCTTSCCTTCCCCCEEEECSSTTEEEEESSSCEEEEEECCEEECCCSTTTTSCCEEEE
T ss_pred ccccccccHhHHHHHHHHHhcCCCCCCCCccccCCeEEEEecCCcEEEEEECCcEEEEEEEecccCCcccCCCCcEEEEE
Confidence 77889999999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred EEeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhh
Q 043337 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLT 164 (465)
Q Consensus 85 Vd~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~d 164 (465)
|+|+|++++.|+.|++++++++++++|+|+|+++.++|+++|||+||+++|.|+|+++||++|||++||+++|+++||++
T Consensus 97 v~~~p~a~~~~~~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~d 176 (358)
T 2nn6_A 97 LELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCH 176 (358)
T ss_dssp EEECTTTCSSCCSSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHH
T ss_pred EEecCCccccccCCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEc
Q 043337 165 FRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244 (465)
Q Consensus 165 a~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k 244 (465)
++||.+.+.+ ..+.+++++++++.||.|+++|++||||++..+..+|+|||.+||..+++.++|+++..|+||++++
T Consensus 177 a~iP~v~~~~---~~v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~t~~g~I~~lqk 253 (358)
T 2nn6_A 177 FRRPDVSVQG---DEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQS 253 (358)
T ss_dssp CCCCCCBCCT---TCCBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEE
T ss_pred hCcCcEEeeC---CeeEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEEcCCCeEEEEEe
Confidence 9999988763 3466777777888999999999999999983223899999999999999999999999999999999
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 043337 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286 (465)
Q Consensus 245 ~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~~ 286 (465)
.|+.+++.++|.+|+++|.+++++|++++++++.++...|..
T Consensus 254 ~G~~~ls~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~~ 295 (358)
T 2nn6_A 254 SGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKE 295 (358)
T ss_dssp ESCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Confidence 998889999999999999999999999999999997776655
No 3
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=6.5e-53 Score=414.74 Aligned_cols=252 Identities=34% Similarity=0.545 Sum_probs=237.2
Q ss_pred CcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEEE
Q 043337 9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFT 85 (465)
Q Consensus 9 ~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~V 85 (465)
..+|..|++|++++|++|+|+|||.++|+|++.|++| +|+|||+|++|+|+|+|+|+++...|..++|++|+|.++|
T Consensus 4 ~~ls~~e~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~ 83 (259)
T 3m7n_G 4 DILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNA 83 (259)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECCCSSCTTSCEEEEEE
T ss_pred cccCHHHHHHHHHHHhcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCCCCCCCCceEEEEEE
Confidence 5689999999999999999999999999999999999 4999999999999999999998877877789999999999
Q ss_pred EeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhC
Q 043337 86 EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTF 165 (465)
Q Consensus 86 d~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da 165 (465)
+++|+|++.|++|++++++++++++|+|+|+++++||+++|||+||+++|.|+|+++||++|||++|||++|+++||+++
T Consensus 84 ~~~p~a~~~~~~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a 163 (259)
T 3m7n_G 84 ELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNT 163 (259)
T ss_dssp ECCTTSCTTCCSSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTC
T ss_pred EeCCcccccccCCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEcc
Q 043337 166 RRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP 245 (465)
Q Consensus 166 ~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~ 245 (465)
+||.+.+.. .+..||.|+++|+++|||++++ .+|+|||.+||+.+++.++|+++.+|+||++++.
T Consensus 164 ~iP~~~~~~-------------~~~~~lp~~~~~~avtvg~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~ 228 (259)
T 3m7n_G 164 KVPAERFDL-------------GEDYLLPVRDLPVSVTSLIVGN--KYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKS 228 (259)
T ss_dssp EECTGGGTS-------------SSCEECCBCCCCEEEEEEEETT--EEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEE
T ss_pred CCCeEEecC-------------CceecccccCceeEEEEEEECC--EEEECCCHHHHhhCCCcEEEEEeCCCcEEEEECC
Confidence 999987752 1245677899999999999998 8999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 246 GGEGVLQSVIMQCLRLASRMASDITKKIKD 275 (465)
Q Consensus 246 Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~ 275 (465)
|+..+++++|.+|+++|.+++++|+++|++
T Consensus 229 g~~~~~~~~l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 229 GGYLLDEKLFDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp SSCCBCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 878999999999999999999999998764
No 4
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=3e-52 Score=413.55 Aligned_cols=265 Identities=37% Similarity=0.608 Sum_probs=243.4
Q ss_pred CCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEE
Q 043337 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84 (465)
Q Consensus 8 ~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~ 84 (465)
...+|..|++|++++|++++|+|||.++|+|+|.|++| +++|||+|++|+|+|+|+|+++...|..+.|++|+|.++
T Consensus 7 ~~~~s~~~~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~~~ 86 (277)
T 2po1_B 7 NEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTN 86 (277)
T ss_dssp ----CCHHHHHHHHHHHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTSCEEEEE
T ss_pred ccccCccHHHHHHHHHhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccCCCCCCCCceEEEEE
Confidence 46899999999999999999999999999999999999 499999999999999999998777788888999999999
Q ss_pred EEeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhh
Q 043337 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLT 164 (465)
Q Consensus 85 Vd~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~d 164 (465)
|+++|++++.|+.|++++++++++++|+++|+++.+||+++|||+|++++|.|+|+++||++|||++||+++|+++||++
T Consensus 87 ~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~d 166 (277)
T 2po1_B 87 VELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLN 166 (277)
T ss_dssp EEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccccCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEc
Q 043337 165 FRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244 (465)
Q Consensus 165 a~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k 244 (465)
+++|.+.+.++++ +.+ + ..+..|+.|+++|+++|||++++ .+|+|||.+||..+++.++|+++.+|+||++++
T Consensus 167 a~~p~~~~~~~~~--~~~-~--~~~~~~ipl~~~~~avs~g~~~~--~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~lq~ 239 (277)
T 2po1_B 167 ARVPKVRYNEETG--EVE-T--LDETEPLPVEKIPVPVTFAKIGN--ILVVDPSLDEELVMDGKITITTDETGHISAVQK 239 (277)
T ss_dssp CEEEEEEECTTTC--CEE-E--EEEEEECCBCCCCEEEEEEEETT--EEEESCCHHHHHHCSEEEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEeCCCc--eee-c--ccccccccccCceEEEEEEEECC--EEEeCCCHHHHhhCCCcEEEEEcCCCCEEEEEc
Confidence 9999998876554 222 1 22344566789999999999997 899999999999999999999999999999999
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279 (465)
Q Consensus 245 ~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~ 279 (465)
.|+..++.++|.+|+++|.+++++|+++++++|++
T Consensus 240 ~g~~~~~~~~l~~~l~~A~~~~~~l~~~~~~~l~~ 274 (277)
T 2po1_B 240 SEGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEK 274 (277)
T ss_dssp ESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98789999999999999999999999999999986
No 5
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.4e-53 Score=428.78 Aligned_cols=273 Identities=25% Similarity=0.412 Sum_probs=246.9
Q ss_pred CCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEE
Q 043337 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84 (465)
Q Consensus 8 ~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~ 84 (465)
...+|..|+.|++++|++++|+|||.++|+|+|.|++|. |+|||+|++|+|+|+|+|++++..|..++|++|+|.++
T Consensus 17 ~~~~s~~e~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~p~~~~~~~g~l~~~ 96 (305)
T 2nn6_E 17 SVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFF 96 (305)
T ss_dssp --CCCHHHHHHHHHHHHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCCCSSSCSSCCEEEE
T ss_pred ccccChhHHHHHHHHHhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeCCCcCCCCceEEEEE
Confidence 367999999999999999999999999999999999994 99999999999999999999988888788999999999
Q ss_pred EEeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhh
Q 043337 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLT 164 (465)
Q Consensus 85 Vd~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~d 164 (465)
|+|+|++++.|+.+.+++++++++++|+|+|+++.+||+++||++|++++|.|+|+++||++|||++||+++|+++||++
T Consensus 97 v~~~p~a~~~~~~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~ 176 (305)
T 2nn6_E 97 VDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFN 176 (305)
T ss_dssp CCCCTTTCSSCCTTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTT
T ss_pred EEeCCCcCccccCCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999999988654555889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeE-eCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEE
Q 043337 165 FRRPECSLGGEDDLEVI-VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243 (465)
Q Consensus 165 a~IP~v~~~~~dG~~v~-i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~ 243 (465)
++||.+.+.+++|..+. ..+.+++++.||.++++|++||||++++ .+|+|||.+||..+++.++|+++.+|+||+++
T Consensus 177 a~iP~~~~~~~~~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~--~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~i~ 254 (305)
T 2nn6_E 177 TRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGY--RHVVDATLQEEACSLASLLVSVTSKGVVTCMR 254 (305)
T ss_dssp CCCCEEEEECC------EEEEESSCCCSCCCCTTCCCCEEEEESSS--SEESSCCHHHHTSCSEEEEECCCSSSCCCEEE
T ss_pred cCCCeEEEecCCCCceeeeccCcccccccccccCceEEEEEEEECC--EEEECCCHHHHhhcCCcEEEEEcCCCCEEEEE
Confidence 99999888655443222 2234456778889999999999999987 89999999999999999999999999999999
Q ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 043337 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNT 282 (465)
Q Consensus 244 k~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~ 282 (465)
+.|+..++.++|.+|+++|.+++++|+++|+++++++..
T Consensus 255 ~~g~~~l~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 255 KVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp EEESSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998889999999999999999999999999999987544
No 6
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=4e-52 Score=412.32 Aligned_cols=269 Identities=31% Similarity=0.487 Sum_probs=246.5
Q ss_pred ccccCCCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeecccCCCCCCCcc
Q 043337 3 TRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEG 79 (465)
Q Consensus 3 ~~m~~~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG 79 (465)
--|.+++.+|..|+.|++++|++++|+|||.++|+|++.|++|. |+|||+|++|+|+|+|+|+++...|..+.|++|
T Consensus 5 ~~~~~~~~~s~~~~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g 84 (277)
T 2je6_A 5 STPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQG 84 (277)
T ss_dssp ECCCCSSCCCHHHHHHHTTTGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCC
T ss_pred ccccccccccccHHHHHHHHHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCCCCCCCCcc
Confidence 45777899999999999999999999999999999999999994 999999999999999999988777877788999
Q ss_pred eEEEEEEeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHH
Q 043337 80 TLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAAL 159 (465)
Q Consensus 80 ~L~v~Vd~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~ 159 (465)
.|.++|+++|+|++.|+.|++++++++++++|+|+|+++++||++.|||.||+++|.|+|+++||++|||++||+++|++
T Consensus 85 ~l~v~~~~~p~a~~~~~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~ 164 (277)
T 2je6_A 85 NLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASV 164 (277)
T ss_dssp EEEEEEEECTTSCTTCCCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHH
T ss_pred EEEEEEEeCCccCcccccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCE
Q 043337 160 ASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDV 239 (465)
Q Consensus 160 aAL~da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I 239 (465)
+||+++++|.+.+.+ + ++.+++. .+..|+.|+++|+++|||++++ .+|+|||.+||+.+++.++|+++.+|+|
T Consensus 165 ~AL~~a~~p~v~~~~-~--~~~~~~~--~~~~~ip~~~~~~avsvg~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~g~i 237 (277)
T 2je6_A 165 AALYNTKVYKVEQHS-N--GISVNKN--EVVGKLPLNYPVVTISVAKVDK--YLVVDPDLDEESIMDAKISFSYTPDLKI 237 (277)
T ss_dssp HHHHTCEEEEEECC------CEEEEE--EEEEECCCSCCCEEEEEEEETT--EEEESCCHHHHHHCSEEEEEEECTTCCE
T ss_pred HHHHhcCCCeEEecC-C--cceEecc--CccccccccCCeEEEEEEEECC--EEecCCCHHHHhcCCCcEEEEEeCCCCE
Confidence 999999999988864 2 2333332 2344566789999999999998 8999999999999999999999998999
Q ss_pred EEEEccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 240 CAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278 (465)
Q Consensus 240 ~~i~k~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~ 278 (465)
+++++.|+..++.++|.+|+++|.+++++|+++++++++
T Consensus 238 ~~v~~~g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 238 VGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLG 276 (277)
T ss_dssp EEEEEESSSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999878899999999999999999999999998874
No 7
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.3e-52 Score=412.85 Aligned_cols=267 Identities=29% Similarity=0.544 Sum_probs=245.6
Q ss_pred CCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEE
Q 043337 8 TWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF 84 (465)
Q Consensus 8 ~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~ 84 (465)
.++.++.|+.|+.++|++|+|+|||.++|+|+|.|++|. |+|||+|++|+|+|+|+|++++..|...++++|.|.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~ 84 (278)
T 2nn6_C 5 AGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPN 84 (278)
T ss_dssp ----CCSTHHHHHHHHHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECCCCSSSTTCCCCEEE
T ss_pred hhhhhhCHHHHHHHHHhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeecCCCCCCCccEEEEE
Confidence 478899999999999999999999999999999999995 99999999999999999999998788778899999999
Q ss_pred EEeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhh
Q 043337 85 TEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLT 164 (465)
Q Consensus 85 Vd~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~d 164 (465)
|+++|+|++.|++|++++++++++++|+|+|+++.+||+++|||+||+++|.|+|+++||++|||++||+++|+++||++
T Consensus 85 ~~~~p~a~~~~~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~ 164 (278)
T 2nn6_C 85 VDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKN 164 (278)
T ss_dssp EECCSSSCTTSCSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHT
T ss_pred EEeCCccCccccCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999999999889999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEc
Q 043337 165 FRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQK 244 (465)
Q Consensus 165 a~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k 244 (465)
++||.+.+..+++ +. ..+++++.||.|+++|+++|||+++++ .+|+|||.+||..+++.++|+++.+|+||++++
T Consensus 165 a~iP~v~~~~~~~--~~--~~~~~~~~~lp~~~~~~avs~g~~~~~-~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~ 239 (278)
T 2nn6_C 165 VQLPEVTINEETA--LA--EVNLKKKSYLNIRTHPVATSFAVFDDT-LLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHK 239 (278)
T ss_dssp CCCCCCCBCSSSB--CC--CTTSCCCSCSCCSCCCEEEEEEECTTT-CCEESCCTTTTTSCSEEEEEEECTTCCEEEEEE
T ss_pred CCCCeEEEeCCCc--ce--ecCcccccccccCCceEEEEEEEECCc-eEEECCCHHHHhhcCceEEEEEcCCCcEEEEEc
Confidence 9999998875543 22 234566778889999999999999863 689999999999999999999999999999999
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 245 PGGEGVLQSVIMQCLRLASRMASDITKKIKDAVET 279 (465)
Q Consensus 245 ~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~ 279 (465)
.|+..++.++|.+|+++|.+++++|++++++++++
T Consensus 240 ~g~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~ 274 (278)
T 2nn6_C 240 PGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKS 274 (278)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98778999999999999999999999999998876
No 8
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.5e-51 Score=405.34 Aligned_cols=264 Identities=33% Similarity=0.604 Sum_probs=239.0
Q ss_pred CCCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEE
Q 043337 7 NTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSI 83 (465)
Q Consensus 7 ~~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v 83 (465)
++.++|..|++|++++|++|+|+|||.++|+|++.|++| +|+|||+|++|+|+|+|+|+++...|..+.+++|.|.+
T Consensus 4 ~~~~~s~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v 83 (271)
T 2wnr_A 4 KMDIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILT 83 (271)
T ss_dssp -----CCHHHHHHHHHHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCCTTCTTCCEEEE
T ss_pred ccccccccHHHHHHHHHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecCCCCCCCceEEEE
Confidence 356899999999999999999999999999999999999 49999999999999999999877778777889999999
Q ss_pred EEEeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHh
Q 043337 84 FTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL 163 (465)
Q Consensus 84 ~Vd~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~ 163 (465)
+|+++|+|++.|+.|++++++++++++|+|+|+++.+||++.|||.||+++|.|+|+++||++|||++||+++|+++||+
T Consensus 84 ~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~ 163 (271)
T 2wnr_A 84 NSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALL 163 (271)
T ss_dssp EEEECGGGCTTCCCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred hCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEE
Q 043337 164 TFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQ 243 (465)
Q Consensus 164 da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~ 243 (465)
++++|.+.+.+ ++ +.+ +. .+..|+.|+++|+++|||++++ .+|+|||.+||..+++.++|+++.+|+|++++
T Consensus 164 ~a~~p~~~~~~-~~--~~~-~~--~~~~~ip~~~~~~avt~g~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~~~i~~i~ 235 (271)
T 2wnr_A 164 DTRIPAAEVED-GE--VVI-NR--EKMQPLPVNRKALMCTFAKIGN--EIVLDPSLEEEDILTARISIGVTEEGSICAMQ 235 (271)
T ss_dssp HCEEEEEEEET-TE--EEE-EE--EEEEECCBCCCEEEEEEEEETT--EEEESCCHHHHTTCSEEEEEEEETTSCEEEEE
T ss_pred hcCCCeEEecC-Cc--eee-cc--CcccccCccCCeEEEEEEEECC--EEEeCCCHHHHhcCCCcEEEEEeCCCCEEEEE
Confidence 99999988753 22 222 22 2344566889999999999998 89999999999999999999999989999999
Q ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 244 KPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVE 278 (465)
Q Consensus 244 k~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~ 278 (465)
+.|+..++.++|.+|+++|.+++++|+++++++++
T Consensus 236 ~~g~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 236 KGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp EESSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99877899999999999999999999999998764
No 9
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.4e-43 Score=344.63 Aligned_cols=229 Identities=21% Similarity=0.260 Sum_probs=199.2
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeec--ccCCCCCCCcceEEEEEEeC
Q 043337 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQL--VQPYRDRPNEGTLSIFTEFS 88 (465)
Q Consensus 14 ~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei--~~P~~~rp~eG~L~v~Vd~s 88 (465)
-|..|++..|++|+|+|||.++|+|+|.|++|. ++|||+|++|+|+|+|+|+++. ..|..+.|++|.|.++|+++
T Consensus 3 ~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~ 82 (240)
T 2wnr_B 3 TIITQDQLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMA 82 (240)
T ss_dssp ------------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEEC
T ss_pred ceEeeeEeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeC
Confidence 366788889999999999999999999999994 9999999999999999999954 33355678999999999999
Q ss_pred CCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCC
Q 043337 89 PMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP 168 (465)
Q Consensus 89 p~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP 168 (465)
|++++.++++++++++++++++|+++|++. +|++.| | .|+|+|+++||++|||++||+++|+++||+|++||
T Consensus 83 p~a~~~~~~~~~~~~~~~l~~ll~r~l~~~--i~l~~~---p---~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP 154 (240)
T 2wnr_B 83 PFSVEERKRPGPDRRSVEISKITAEALRPA--LILEKF---P---RSVIDVFIEVLEAEGGTRCAGITAASVALADAGIP 154 (240)
T ss_dssp TTSSSSCCCSSCCHHHHHHHHHHHHHHGGG--BCGGGS---T---TEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcCCccCCCCChhHHHHHHHHHHHHHHh--cCHHHC---C---CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCc
Confidence 999998877888999999999999999974 777765 3 49999999999999999999999999999999999
Q ss_pred CcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEE-cCCCCEEEEEccCC
Q 043337 169 ECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL-NANGDVCAIQKPGG 247 (465)
Q Consensus 169 ~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~-~~~g~I~~i~k~Gg 247 (465)
|+++|+++|||++++ .+|+|||.+||..+++.++|++ +..|+||++++.|+
T Consensus 155 --------------------------~~~~v~avs~g~~~~--~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~ 206 (240)
T 2wnr_B 155 --------------------------MRDMVVACAAGKVGD--QVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGN 206 (240)
T ss_dssp --------------------------BSSCCEEEEEEESSS--SEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEEC
T ss_pred --------------------------cccceeeEEEEEECC--EEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcc
Confidence 357999999999987 7999999999999999999998 67889999999974
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043337 248 EGVLQSVIMQCLRLASRMASDITKKIKDAVETY 280 (465)
Q Consensus 248 ~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~ 280 (465)
++.++|.+|+++|.+++++|++.++++++++
T Consensus 207 --~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (240)
T 2wnr_B 207 --LTPEEFERALDLAVEGCLRIHEVQKEALRKR 237 (240)
T ss_dssp --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999874
No 10
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=7.6e-43 Score=341.25 Aligned_cols=232 Identities=21% Similarity=0.252 Sum_probs=205.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeecccCCC---CCCCcceEEEEEEeC
Q 043337 15 EKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR---DRPNEGTLSIFTEFS 88 (465)
Q Consensus 15 e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~~P~~---~rp~eG~L~v~Vd~s 88 (465)
|..+++-.+++|+|+|||.++|+|+|.|++|. ++|||+|++|+|+|+|+|+++...|.. +.+++|.|.++++++
T Consensus 4 ~~~~~~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~ 83 (249)
T 2nn6_B 4 PMAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSA 83 (249)
T ss_dssp -------CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEEC
T ss_pred hhhhhhhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcC
Confidence 44445445588999999999999999999994 999999999999999999999865554 578899999999999
Q ss_pred CCCCCCcc-CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCC
Q 043337 89 PMADPSFE-TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRR 167 (465)
Q Consensus 89 p~as~~~~-~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~I 167 (465)
|++++.+. ++++++++++++++|+++|++ +||++.|+ +|+|+|+++||++|||+++|+++|+++||+|++|
T Consensus 84 p~a~~~~~~~~~~~~~~~~~~~ll~r~l~~--~i~~~~~p------~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~i 155 (249)
T 2nn6_B 84 TFSTGERKRRPHGDRKSCEMGLQLRQTFEA--AILTQLHP------RSQIDIYVQVLQADGGTYAACVNAATLAVLDAGI 155 (249)
T ss_dssp TTTSSSCCCTTTSTHHHHHHHHHHHHHHHH--TTCGGGCT------TEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCC
T ss_pred CCcccccccCCCCCHhHHHHHHHHHHHHHH--hcCHHHCC------CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCC
Confidence 99988765 577889999999999999997 48887763 5999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEc-CCCCEEEEEccC
Q 043337 168 PECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLN-ANGDVCAIQKPG 246 (465)
Q Consensus 168 P~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~-~~g~I~~i~k~G 246 (465)
| |+++|+++|||++++ .+|+|||.+||..+++.++|+++ ..|+||++++.|
T Consensus 156 P--------------------------l~~~v~avs~g~~~~--~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g 207 (249)
T 2nn6_B 156 P--------------------------MRDFVCACSAGFVDG--TALADLSHVEEAAGGPQLALALLPASGQIALLEMDA 207 (249)
T ss_dssp C--------------------------CSSCCEEEEEEEETT--EEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECS
T ss_pred c--------------------------ccCCeeeEEEEEECC--eEEECCChHHhccCCcEEEEEEECCCCCEEEEEEEC
Confidence 9 457999999999997 89999999999999999999995 778999999986
Q ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 043337 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTER 284 (465)
Q Consensus 247 g~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er 284 (465)
.++.++|.+|+++|.+++++|++.|+++++++..++
T Consensus 208 --~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 243 (249)
T 2nn6_B 208 --RLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREA 243 (249)
T ss_dssp --CCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999865544
No 11
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=5.2e-42 Score=335.33 Aligned_cols=229 Identities=21% Similarity=0.319 Sum_probs=206.1
Q ss_pred HHHHhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEe--ecccCCCCCCCcceEEEEEEeCCCCCCC
Q 043337 20 ETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTG--QLVQPYRDRPNEGTLSIFTEFSPMADPS 94 (465)
Q Consensus 20 ~~~L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~--ei~~P~~~rp~eG~L~v~Vd~sp~as~~ 94 (465)
+.+|++|+|+|||.++|+|+|.|++|. ++|||+|++|+|+|+|+|++ +...|..+.+++|.|.++|+++|++++.
T Consensus 9 ~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 88 (249)
T 2po1_A 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEE 88 (249)
T ss_dssp CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSS
T ss_pred EEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCccccc
Confidence 446788999999999999999999994 99999999999999999999 4433456678999999999999999987
Q ss_pred ccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCC
Q 043337 95 FETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174 (465)
Q Consensus 95 ~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~ 174 (465)
+..+.+++++++++++|+++|++ +||++.| | .|.|+|+++||++|||+++|+++|+++||++++||
T Consensus 89 ~~~~~~~~~~~~~s~li~r~l~~--~i~l~~~---p---~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP------ 154 (249)
T 2po1_A 89 RKKPGPDRRSIEISKVIKGALEP--ALILEMF---P---RTAIDVFIEVLQADAGTRVAGITAASLALADAGIP------ 154 (249)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHGG--GBCGGGS---T---TEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCC------
T ss_pred ccCCCCCHHHHHHHHHHHHHHHh--hccHHHC---C---CCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC------
Confidence 76667889999999999999997 4777654 4 39999999999999999999999999999999999
Q ss_pred CCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEE-cCCCCEEEEEccCCCccCHH
Q 043337 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL-NANGDVCAIQKPGGEGVLQS 253 (465)
Q Consensus 175 ~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~-~~~g~I~~i~k~Gg~~is~~ 253 (465)
|+++|+++|||++++ .+|+|||.+||..+++.++|++ +..++||++++.| .++.+
T Consensus 155 --------------------~~~~v~avs~g~~~~--~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g--~~~~~ 210 (249)
T 2po1_A 155 --------------------MRDLVAACAAGKIEG--EIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG--YLTKD 210 (249)
T ss_dssp --------------------BSSCCEEEEEEEETT--EEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEE--CCCHH
T ss_pred --------------------ccCceEEEEEEEECC--EEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEc--ccCHH
Confidence 356899999999997 8999999999999999999998 6788999999987 48999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 043337 254 VIMQCLRLASRMASDITKKIKDAVETYNTERAL 286 (465)
Q Consensus 254 ~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~~ 286 (465)
+|.+|+++|.+++++|++++++++.++..++..
T Consensus 211 ~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 243 (249)
T 2po1_A 211 EFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999987665543
No 12
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=6.9e-42 Score=334.50 Aligned_cols=225 Identities=23% Similarity=0.287 Sum_probs=202.2
Q ss_pred HhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeecc--cCCCCCCCcceEEEEEEeCCCCCCCccC
Q 043337 23 LSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV--QPYRDRPNEGTLSIFTEFSPMADPSFET 97 (465)
Q Consensus 23 L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~--~P~~~rp~eG~L~v~Vd~sp~as~~~~~ 97 (465)
|++++|+|||.++|+|+|.|++|. |+|||+|++|+|+|+|+|+++.. .|..+.+++|.|.++|+++|+|++.++.
T Consensus 16 l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~ 95 (250)
T 2je6_B 16 LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKN 95 (250)
T ss_dssp CTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCC
T ss_pred cCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCccC
Confidence 678999999999999999999994 99999999999999999998643 2345568899999999999999988877
Q ss_pred CCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCCCC
Q 043337 98 GRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177 (465)
Q Consensus 98 g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~dG 177 (465)
+++++++++++++|+|+|+++ ++++.+ ++|.|+|+++||++|||+++|+++|+++||++++||
T Consensus 96 g~~~~~e~~~s~li~r~l~~~--i~~~~~------p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP--------- 158 (250)
T 2je6_B 96 PAPSRREIELSKVIREALESA--VLVELF------PRTAIDVFTEILQADAGSRLVSLMAASLALADAGIP--------- 158 (250)
T ss_dssp SSCCHHHHHHHHHHHHHHHTT--BCGGGS------TTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC---------
T ss_pred CCCChhHHHHHHHHHHHHHhh--cCHhhC------CCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCC---------
Confidence 889999999999999999986 666553 359999999999999999999999999999999999
Q ss_pred ceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEE-cCCCCEEEEEccCCCccCHHHHH
Q 043337 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL-NANGDVCAIQKPGGEGVLQSVIM 256 (465)
Q Consensus 178 ~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~-~~~g~I~~i~k~Gg~~is~~~L~ 256 (465)
++++|+++|||++++ .+|+|||.+|+..+++.++|++ +..++|+++++.| .++.++|.
T Consensus 159 -----------------~~~~v~avsvg~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g--~~~~~~l~ 217 (250)
T 2je6_B 159 -----------------MRDLIAGVAVGKADG--VIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNG--SMTPDEFR 217 (250)
T ss_dssp -----------------BSSCCEEEEEEEETT--EEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEE--CBCHHHHH
T ss_pred -----------------ccCceEEEEEEEECC--EEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEc--ccCHHHHH
Confidence 346899999999997 8999999999999999999999 5778899999886 58999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 043337 257 QCLRLASRMASDITKKIKDAVETYNTERA 285 (465)
Q Consensus 257 ~~i~~A~~~a~~I~~~I~~~l~~~~~er~ 285 (465)
+|+++|.+++++|++++++++.++..+|.
T Consensus 218 ~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 246 (250)
T 2je6_B 218 QAFDLAVKGINIIYNLEREALKSKYVEFK 246 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998655543
No 13
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-41 Score=335.03 Aligned_cols=231 Identities=23% Similarity=0.250 Sum_probs=201.1
Q ss_pred cCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccCCCCC-CCcceEEEEEEeCCCCCCCcc----
Q 043337 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYRDR-PNEGTLSIFTEFSPMADPSFE---- 96 (465)
Q Consensus 25 ~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~r-p~eG~L~v~Vd~sp~as~~~~---- 96 (465)
.|+|+|||.++|+|+|.|++| .|+|||+|++|+|+|+|+|+++...|...+ +++|+|.+++++.|++++.|.
T Consensus 4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re~ 83 (262)
T 3b4t_A 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRES 83 (262)
T ss_dssp -CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHH
T ss_pred CCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCcccccccccc
Confidence 589999999999999999999 499999999999999999999987665434 788999999999999988774
Q ss_pred -CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCC
Q 043337 97 -TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGE 175 (465)
Q Consensus 97 -~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~ 175 (465)
.|++++++++++++|+|+|++ +||++.| ..|+|+|+++||++|||+++|+++|+++||++++.|.+ +
T Consensus 84 ~~G~~~~~~~~isrli~r~lr~--~i~~~~l------~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~----~ 151 (262)
T 3b4t_A 84 VRGRLSGRTQEISRLIGRSLRA--CIDLAAL------GENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLS----A 151 (262)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHT--TBCHHHH------CSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--hcCHhHC------CCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhc----c
Confidence 378999999999999999996 6888887 24999999999999999999999999999999964321 1
Q ss_pred CCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccCC-CccCHHH
Q 043337 176 DDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG-EGVLQSV 254 (465)
Q Consensus 176 dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~Gg-~~is~~~ 254 (465)
+|. ..++ +.|+++|++||||++++ .+|+|||.+||+.+++.++|+++.+|+||++++.|+ ..++.++
T Consensus 152 ~~~--------~~~~--ip~~~~v~avsvg~~~g--~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~~ 219 (262)
T 3b4t_A 152 AGK--------LSDP--RPLSCAIAAVSVGVVDG--RIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARST 219 (262)
T ss_dssp TTC--------CSSS--CCBCSCEEEEEEEEETT--EEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHH
T ss_pred CCc--------cccC--CcccCceeEEEEEEECC--EEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCCCCCcCHHH
Confidence 110 0112 33688999999999987 899999999999999999999998899999999874 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 255 IMQCLRLASRMASDITKKIKDAVET 279 (465)
Q Consensus 255 L~~~i~~A~~~a~~I~~~I~~~l~~ 279 (465)
|.+|+++|.+++++|++++++++++
T Consensus 220 l~~~l~~A~~~~~~i~~~~~~~l~~ 244 (262)
T 3b4t_A 220 LDKLLDMALGACDTLFAAQRDALAL 244 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999986
No 14
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=332.41 Aligned_cols=222 Identities=14% Similarity=0.229 Sum_probs=188.9
Q ss_pred HhcCCCCCCCCCCCCcceEEEecC---C-CceEEEEeCCeEEEEEEEeecc--cCCCCCCCcceEEEEEEeCCCCCCCcc
Q 043337 23 LSSGIRIDGRNPFEYRKLSIKFGR---E-DGSSEVQLGQTHIMGFVTGQLV--QPYRDRPNEGTLSIFTEFSPMADPSFE 96 (465)
Q Consensus 23 L~~giR~DGR~~~e~R~I~I~~G~---A-dGSA~V~~G~T~Vi~~V~~ei~--~P~~~rp~eG~L~v~Vd~sp~as~~~~ 96 (465)
+++|+|+|||.++|+|+|.|++|. + +|||+|++|+|+|+|+|+++.. .|..+.+++|.|.++++++|++++.|.
T Consensus 8 ~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~ 87 (246)
T 2wp8_B 8 SPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERS 87 (246)
T ss_dssp CTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC--------
T ss_pred cccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccccccc
Confidence 368999999999999999999994 6 9999999999999999999875 234556889999999999999988775
Q ss_pred C--CCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCC
Q 043337 97 T--GRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174 (465)
Q Consensus 97 ~--g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~ 174 (465)
+ +++++++++++++|+|+|+++ ++++.| ++|+|+|+++||++|||+++|+++|+++||++++||
T Consensus 88 ~r~g~~~~~~~~~s~li~r~l~~~--i~~~~~------p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP------ 153 (246)
T 2wp8_B 88 KSSHKNERRVLEIQTSLVRMFEKN--VMLNIY------PRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGIS------ 153 (246)
T ss_dssp ------CHHHHHHHHHHHHHHHHH--BCTTTS------CSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCC------
T ss_pred ccCCCCChhHHHHHHHHHHHHHHh--hhHHHC------CCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCc------
Confidence 4 667899999999999999985 666554 379999999999999999999999999999999999
Q ss_pred CCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEE-cCCCCEEEEEccCCCccCHH
Q 043337 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL-NANGDVCAIQKPGGEGVLQS 253 (465)
Q Consensus 175 ~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~-~~~g~I~~i~k~Gg~~is~~ 253 (465)
|+++|+++|||++++ .+|+|||.+|+ .+++.++|++ +..++|+++++.| .++.+
T Consensus 154 --------------------~~~~v~avs~g~~~~--~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~ 208 (246)
T 2wp8_B 154 --------------------MFDYISGISVGLYDT--TPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVED--KIPLD 208 (246)
T ss_dssp --------------------BSSCEEEEEEEEETT--EEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECS--CEEHH
T ss_pred --------------------ccCceeEEEEEEECC--EEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecC--CcCHH
Confidence 357999999999988 89999999999 9999999999 5788999999854 68999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 043337 254 VIMQCLRLASRMASDITKKIKDAVETYNTE 283 (465)
Q Consensus 254 ~L~~~i~~A~~~a~~I~~~I~~~l~~~~~e 283 (465)
+|.+|+++|.+++++|++.++++++++..+
T Consensus 209 ~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 238 (246)
T 2wp8_B 209 RLENVLAIGIAGAHRVRDLMDEELRKHAQK 238 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999985443
No 15
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=1.9e-41 Score=333.52 Aligned_cols=221 Identities=21% Similarity=0.305 Sum_probs=201.5
Q ss_pred HHhcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecc--cCCCCCCCcceEEEEEEeCCCCCCCcc
Q 043337 22 ALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV--QPYRDRPNEGTLSIFTEFSPMADPSFE 96 (465)
Q Consensus 22 ~L~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~--~P~~~rp~eG~L~v~Vd~sp~as~~~~ 96 (465)
+|.+|+|+|||.++|+|+|.|++| +++|||+|++|+|+|+|+|+++.. .+....|++|+|.++++++|++.+.++
T Consensus 11 ~i~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r~ 90 (258)
T 3m7n_D 11 LIVDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERK 90 (258)
T ss_dssp SEETTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCC
T ss_pred HHhcCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccccc
Confidence 445899999999999999999999 499999999999999999998543 233457899999999999999998887
Q ss_pred CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCCC
Q 043337 97 TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGED 176 (465)
Q Consensus 97 ~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~d 176 (465)
++++++++++++++|+|+|++ +||++.| ++|.|+|+++||++|||+++|+++|+++||++++||
T Consensus 91 ~~~~~~re~ei~~li~r~l~~--~i~~~~~------p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP-------- 154 (258)
T 3m7n_D 91 RPGPDRRSIEISKVSKEAFEA--VIMKELF------PRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVP-------- 154 (258)
T ss_dssp CSSCCHHHHHHHHHHHHHHHT--TBCGGGS------TTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCC--------
T ss_pred CCCCCHHHHHHHHHHHHHHHh--hcCHHhC------CceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCC--------
Confidence 788999999999999999998 4777765 379999999999999999999999999999999999
Q ss_pred CceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEE-cCC---CCEEEEEccCCCccCH
Q 043337 177 DLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL-NAN---GDVCAIQKPGGEGVLQ 252 (465)
Q Consensus 177 G~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~-~~~---g~I~~i~k~Gg~~is~ 252 (465)
|+++|++||+|++++ .+|+|||..|+..+++.++|++ +.. ++||++++.| .++.
T Consensus 155 ------------------~~~~v~avsvg~i~~--~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g--~~~~ 212 (258)
T 3m7n_D 155 ------------------MKGMITSVAVGKADG--QLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDG--RMTR 212 (258)
T ss_dssp ------------------BSSEEEEEEEEEETT--EEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEE--EECH
T ss_pred ------------------CCCceEEEEEEEECC--EEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecC--CcCH
Confidence 356999999999987 8999999999999999999999 677 8899999986 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043337 253 SVIMQCLRLASRMASDITKKIKDAVETY 280 (465)
Q Consensus 253 ~~L~~~i~~A~~~a~~I~~~I~~~l~~~ 280 (465)
++|.+|+++|.+.+++|+++++++++++
T Consensus 213 ~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 240 (258)
T 3m7n_D 213 DEVKQAIELAKKGALQIYEMQREAILRR 240 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999874
No 16
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=3.7e-41 Score=330.89 Aligned_cols=232 Identities=19% Similarity=0.281 Sum_probs=204.9
Q ss_pred hcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccC-CCCCCCcceEEEEEEeCCCCCCCcc---
Q 043337 24 SSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP-YRDRPNEGTLSIFTEFSPMADPSFE--- 96 (465)
Q Consensus 24 ~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P-~~~rp~eG~L~v~Vd~sp~as~~~~--- 96 (465)
...+|.|||+++++|+|.|++| .|+|||+|++|+|+|+|+|+++...| ...+|++|+|.+++++.|++++.|.
T Consensus 8 ~~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~~Re 87 (255)
T 3dd6_A 8 HHHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRE 87 (255)
T ss_dssp ---CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCC
T ss_pred ccccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCccccccccc
Confidence 4579999999999999999999 49999999999999999999987654 5567899999999999999988864
Q ss_pred --CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCC
Q 043337 97 --TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGG 174 (465)
Q Consensus 97 --~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~ 174 (465)
+|++++++++++++|+|+|++ +||++.| ..|+|+|+++||++|||+++|+++|+++||+++++|.+.
T Consensus 88 ~~~g~~~~~~~eisrli~r~lr~--~i~~~~l------~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~--- 156 (255)
T 3dd6_A 88 SSKGKVTGRTMEIQRLIGRALRA--VVDLEAL------GERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQ--- 156 (255)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHHH--HBCHHHH------CSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccCCCCCHHHHHHHHHHHHHHHH--hcChhhc------CCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhh---
Confidence 278999999999999999998 6898877 249999999999999999999999999999999888542
Q ss_pred CCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEE-EcCCHHHHHcCcceEEEEEcCCCCEEEEEccC-CCccCH
Q 043337 175 EDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLV-IDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGVLQ 252 (465)
Q Consensus 175 ~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iL-vDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~G-g~~is~ 252 (465)
+| +..++| |+++|++||||++++ .+| +|||.+|+..+++.++|+++.+|+||++++.| +..++.
T Consensus 157 -~g---------~~~~iP--l~~~v~avsvg~i~g--~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~~~~~~~ 222 (255)
T 3dd6_A 157 -AE---------KVSKIP--VKDYLAATSVGIVEE--QGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSR 222 (255)
T ss_dssp -TT---------SSSSCC--BSSCEEEEEEEEETT--TEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCH
T ss_pred -cC---------cccCCC--ccCceeEEEEEEECC--EEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCCCCCcCH
Confidence 11 122344 689999999999987 455 99999999999999999999999999999987 678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043337 253 SVIMQCLRLASRMASDITKKIKDAVETY 280 (465)
Q Consensus 253 ~~L~~~i~~A~~~a~~I~~~I~~~l~~~ 280 (465)
++|.+|+++|.+.+++|++++++++++.
T Consensus 223 ~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 250 (255)
T 3dd6_A 223 AQLNELLDAAEQGIFQLIDIQKEALGDI 250 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999873
No 17
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=8.5e-41 Score=324.41 Aligned_cols=227 Identities=19% Similarity=0.240 Sum_probs=197.8
Q ss_pred CCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeecccCCCC-CCCcceEEEEEEeCCCCCCCcc-----C
Q 043337 27 IRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYRD-RPNEGTLSIFTEFSPMADPSFE-----T 97 (465)
Q Consensus 27 iR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~~P~~~-rp~eG~L~v~Vd~sp~as~~~~-----~ 97 (465)
.|+|||.++|+|+|.|++|. |+|||+|++|+|+|+|+|+++...|... .+++|+|.+++++.|++++.+. +
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~ 81 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASR 81 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCC
Confidence 39999999999999999994 9999999999999999999998776433 3788999999999999988652 3
Q ss_pred CCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCCCC
Q 043337 98 GRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177 (465)
Q Consensus 98 g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~dG 177 (465)
|++++++++++++|+|+|++ +||++.| +.|+|+|+++||++|||+++|+++|+++||++++.|.+. +|
T Consensus 82 G~~~~~~~~isrli~r~l~~--~i~~~~l------~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~----~~ 149 (239)
T 1r6l_A 82 GKQGGRTLEIQRLIGRSLRA--ALDLSKL------GENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKK----RG 149 (239)
T ss_dssp TSCCHHHHHHHHHHHHHHHH--TBCGGGT------CSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred CCCcHHHHHHHHHHHHHHHH--hcCHHHc------CCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcc----cC
Confidence 78899999999999999996 6898887 348999999999999999999999999999999854221 11
Q ss_pred ceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccC-CCccCHHHHH
Q 043337 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGVLQSVIM 256 (465)
Q Consensus 178 ~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~G-g~~is~~~L~ 256 (465)
+-. ++.|+++|+++|||++++ .+|+|||.+||+.+++.++|+++.+|++|.+++.| +..++.++|.
T Consensus 150 ---------~~~--~ip~~~~~~avs~g~~~~--~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~ 216 (239)
T 1r6l_A 150 ---------ALK--GNPLKQMVAAVSVGIYQG--VPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELN 216 (239)
T ss_dssp ---------CCS--SCCBCCCEEEEEEEEETT--EEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHH
T ss_pred ---------ccc--ccCccCceeEEEEEEECC--EEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCcCHHHHH
Confidence 011 233688999999999987 89999999999999999999999999999999876 4689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043337 257 QCLRLASRMASDITKKIKDAVE 278 (465)
Q Consensus 257 ~~i~~A~~~a~~I~~~I~~~l~ 278 (465)
+|+++|.+++++|+++++++++
T Consensus 217 ~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 217 AMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 18
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=2.6e-41 Score=329.53 Aligned_cols=231 Identities=19% Similarity=0.234 Sum_probs=188.6
Q ss_pred CCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccCC-CCCCCcceEEEEEEeCCCCCCCc-----cC
Q 043337 27 IRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPY-RDRPNEGTLSIFTEFSPMADPSF-----ET 97 (465)
Q Consensus 27 iR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P~-~~rp~eG~L~v~Vd~sp~as~~~-----~~ 97 (465)
+|+|||.++|+|+|.|++| +++|||+|++|+|+|+|+|+++...|. ...+++|+|.++++++|++++.+ .+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~ 80 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK 80 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccC
Confidence 5999999999999999999 499999999999999999999987764 35688999999999999998765 24
Q ss_pred CCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCCCC
Q 043337 98 GRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177 (465)
Q Consensus 98 g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~dG 177 (465)
|++++++++++++|+++|++ +||++.| +.|+|+|+++||++|||+++|+++|+++||++++.|.+. +|
T Consensus 81 G~~~~~~~eis~li~r~l~~--~i~~~~l------~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~----~~ 148 (245)
T 1oys_A 81 GKISGRTMEIQRLIGRALRA--VVDLEKL------GERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIK----AG 148 (245)
T ss_dssp ----CHHHHHHHHHHHHHHH--TBCHHHH------CSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred CCCchHHHHHHHHHHHHHHH--hcCHhHC------CCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcc----cC
Confidence 67889999999999999997 6898887 347889999999999999999999999999999977431 11
Q ss_pred ceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccCC-CccCHHHHH
Q 043337 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG-EGVLQSVIM 256 (465)
Q Consensus 178 ~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~Gg-~~is~~~L~ 256 (465)
+. .|+.|+++|+++|||++++ ..+|+|||.+||..+++.++|+++.+|+||++++.|+ ..++.++|.
T Consensus 149 ---------~~--~~ipl~~~v~avs~g~~~g-~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~ 216 (245)
T 1oys_A 149 ---------TI--KTNPITDFLAAISVGIDKE-QGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLN 216 (245)
T ss_dssp ---------SS--SSCCBCSCEEEEEEEEETT-TEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHH
T ss_pred ---------cc--cccCCCCceeEEEEEEECC-EEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCCcCHHHHH
Confidence 12 2445789999999999986 2444999999999999999999999999999999863 689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 043337 257 QCLRLASRMASDITKKIKDAVETYN 281 (465)
Q Consensus 257 ~~i~~A~~~a~~I~~~I~~~l~~~~ 281 (465)
+|+++|.+++++|++.++++++++.
T Consensus 217 ~~l~~A~~~~~~i~~~~~~~l~~~~ 241 (245)
T 1oys_A 217 GLLGLAEKGIQELIDKQKEVLGDSL 241 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998753
No 19
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=8e-41 Score=328.14 Aligned_cols=228 Identities=19% Similarity=0.246 Sum_probs=201.4
Q ss_pred CCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccCCC-CCCCcceEEEEEEeCCCCCCCc-----cC
Q 043337 27 IRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR-DRPNEGTLSIFTEFSPMADPSF-----ET 97 (465)
Q Consensus 27 iR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P~~-~rp~eG~L~v~Vd~sp~as~~~-----~~ 97 (465)
+|+|||.++|+|+|.|++| +|+|||+|++|+|+|+|+|+++...|.. ..+++|+|.+++++.|++++.+ .+
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~ 80 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQ 80 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTT
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCC
Confidence 5999999999999999999 4999999999999999999999876632 3478999999999999998765 24
Q ss_pred CCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCCCC
Q 043337 98 GRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177 (465)
Q Consensus 98 g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~dG 177 (465)
|++++++++++++|+|+|++ +||++.| +.|+|+|+++||++|||+++|+++|+++||+|++.|.+. .|
T Consensus 81 G~~~~~~~eisrli~r~lr~--~i~~~~l------~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~----~~ 148 (255)
T 1udn_A 81 GRIGGRTHEIQRMIGRAMRT--AVELTKI------GERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHK----EG 148 (255)
T ss_dssp CSCCHHHHHHHHHHHHHHHH--HBCGGGG------CSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred CCCCHHHHHHHHHHHHHHHH--hcCHHHc------CCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcc----cC
Confidence 78899999999999999997 6899887 249999999999999999999999999999999965321 11
Q ss_pred ceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccC-CCccCHHHHH
Q 043337 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-GEGVLQSVIM 256 (465)
Q Consensus 178 ~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~G-g~~is~~~L~ 256 (465)
+.. ++.|+++|+++|||++++ .+|+|||.+||..+++.++|+++.+|++|.+++.| +..+++++|.
T Consensus 149 ---------~~~--~ipl~~~v~avsvg~~~g--~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~ 215 (255)
T 1udn_A 149 ---------IIE--ETPIKDFVAAVSVGIVND--RILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELI 215 (255)
T ss_dssp ---------SSS--SCCBCCCEEEEEEEEETT--EEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHH
T ss_pred ---------ccc--CCCccCceeEEEEEEECC--EEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHH
Confidence 122 334689999999999987 89999999999999999999999999999999876 4689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043337 257 QCLRLASRMASDITKKIKDAVET 279 (465)
Q Consensus 257 ~~i~~A~~~a~~I~~~I~~~l~~ 279 (465)
+|+++|.+++++|++++++++.+
T Consensus 216 ~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 216 KMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 20
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3e-41 Score=333.96 Aligned_cols=244 Identities=17% Similarity=0.162 Sum_probs=193.0
Q ss_pred cccccCCCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeecccCCC-C---
Q 043337 2 DTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQPYR-D--- 74 (465)
Q Consensus 2 ~~~m~~~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~~P~~-~--- 74 (465)
+.|+...+.-|..|..|+. .+++|+|||.++|+|+|.|++|. |+|||+|++|+|+|+|+|+++...+.. +
T Consensus 4 d~rr~~gp~~~~~~~~~~~---~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~ 80 (272)
T 2nn6_F 4 DHRRIRGPEESQPPQLYAA---DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGG 80 (272)
T ss_dssp ----------------------------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC--------
T ss_pred ccccccCCCcccCCccccc---ccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccc
Confidence 4577788889999999977 68899999999999999999994 999999999999999999998765432 2
Q ss_pred ---------CCCcceEEEEEEeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEc
Q 043337 75 ---------RPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILD 145 (465)
Q Consensus 75 ---------rp~eG~L~v~Vd~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~ 145 (465)
.+++|.|.++|++.|++++.++.+++++++++++++|+|+|++. ++++. + ++|.|+|+++||+
T Consensus 81 ~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~e~~~s~li~r~l~~~--i~~~~---~---p~~~I~I~~~VL~ 152 (272)
T 2nn6_F 81 PAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPA--VRLGR---Y---PRAQLEVSALLLE 152 (272)
T ss_dssp -----------CBCEEEEEEEECTTSSSSCCCSCCHHHHHHHHHHHHHHHTTT--BCSTT---S---BTCEEEEEEEEEE
T ss_pred cccccccccCCCceEEEEEEEecCCCcCCccCCCCCHHHHHHHHHHHHHHHHh--ccHHH---C---CceEEEEEEEEEe
Confidence 45789999999999999988888889999999999999999985 55443 2 3599999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEE---ECCccEEEEcCCHHHH
Q 043337 146 NGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGF---FSSESLLVIDPTHHEE 222 (465)
Q Consensus 146 ~DGnllDaa~~Aa~aAL~da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gl---i~~~~~iLvDPT~~EE 222 (465)
+|||+++|+++|+++||++++|| |++++++++||+ +++ .+|+|||..|+
T Consensus 153 ~DG~~~~aai~aa~~AL~da~iP--------------------------~~~~v~avsvg~~~~~~~--~~llDpt~~Ee 204 (272)
T 2nn6_F 153 DGGSALAAALTAAALALADAGVE--------------------------MYDLVVGCGLSLAPGPAP--TWLLDPTRLEE 204 (272)
T ss_dssp CCSSHHHHHHHHHHHHHHHHCCC--------------------------BSSCCEEEECCCCSCSSC--CCCSSCCTTTG
T ss_pred CCCCHHHHHHHHHHHHHHHcCCc--------------------------ccCcEEEEEEEEeeccCC--eEEeCCCHHHh
Confidence 99999999999999999999999 346889999999 665 89999999999
Q ss_pred HcCcceEEEEE-cCCCCEEEEEccCCCccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Q 043337 223 AVMVGKMTATL-NANGDVCAIQKPGGEGVLQ-SVIMQCLRLASRMASDITKKIKDAVETYNTERAL 286 (465)
Q Consensus 223 ~~s~~~LtVa~-~~~g~I~~i~k~Gg~~is~-~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~~ 286 (465)
..+++.++|++ +..++|+++++.| .++. ++|.+|+++|.+.+++|+++|++++++...+|.+
T Consensus 205 ~~~~~~l~va~~~~~~~I~~i~~~g--~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 268 (272)
T 2nn6_F 205 ERAAAGLTVALMPVLNQVAGLLGSG--EGGLTESWAEAVRLGLEGCQRLYPVLQQSLVRAARRRGA 268 (272)
T ss_dssp GGCSSEEEEEEETTTTEEEEEEEEC--CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEeCCCCCEEEEEEec--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999996 5678899999987 5888 9999999999999999999999999987665543
No 21
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.6e-40 Score=319.37 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=174.1
Q ss_pred HHHHhcCCCCCCCCCC----CCcceEEEecC---CCceEEEEeCCeEEEEEEEeecc-cCCCCCCCcceEEEEEEeCCCC
Q 043337 20 ETALSSGIRIDGRNPF----EYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLV-QPYRDRPNEGTLSIFTEFSPMA 91 (465)
Q Consensus 20 ~~~L~~giR~DGR~~~----e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~-~P~~~rp~eG~L~v~Vd~sp~a 91 (465)
.+++.+++|+|||.++ |+|+|.|++|. ++|||+|++|+|+|+|+|+++.. .|..+.+++|.|. ++|+|+
T Consensus 9 ~~~~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~--~~~~p~- 85 (237)
T 2nn6_D 9 TDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLE--VILRPK- 85 (237)
T ss_dssp ------------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEE--EEEECS-
T ss_pred CCCCccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEE--EEecCC-
Confidence 3566789999999999 99999999994 99999999999999999999986 4555567777554 567775
Q ss_pred CCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcc
Q 043337 92 DPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECS 171 (465)
Q Consensus 92 s~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~ 171 (465)
.|++++++++++++|+++|++ +|+..+.++|+|+|+++||++|||+++|+++|+++||+|++||
T Consensus 86 -----~g~~~~~e~~~~~li~r~l~~--------~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP--- 149 (237)
T 2nn6_D 86 -----IGLPGVAEKSRERLIRNTCEA--------VVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP--- 149 (237)
T ss_dssp -----SSCCCHHHHHHHHHHHHHHHH--------HCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC---
T ss_pred -----CCCCCccHHHHHHHHHHHHHH--------HhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCC---
Confidence 367788999999999999865 5666778899999999999999999999999999999999999
Q ss_pred cCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCC-CEEEEEccCCCcc
Q 043337 172 LGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG-DVCAIQKPGGEGV 250 (465)
Q Consensus 172 ~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g-~I~~i~k~Gg~~i 250 (465)
|+++|+++|||++.++ .+|+||+..||..+.+.++|+++..+ +|+++++.| .+
T Consensus 150 -----------------------~~~~v~avs~g~~~~~-~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g--~~ 203 (237)
T 2nn6_D 150 -----------------------MRALFCGVACALDSDG-TLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKG--LY 203 (237)
T ss_dssp -----------------------CSSCEEEEEEEECTTC-CEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEE--SC
T ss_pred -----------------------cccCeeeEEEEEecCC-cEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeC--Cc
Confidence 3579999999999432 79999999999999999999999876 799999976 59
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043337 251 LQSVIMQCLRLASRMASDITKKIKDAVETY 280 (465)
Q Consensus 251 s~~~L~~~i~~A~~~a~~I~~~I~~~l~~~ 280 (465)
+.++|.+|+++|.+++++|+++++++++++
T Consensus 204 ~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 204 SDTELQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999874
No 22
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=5.4e-39 Score=314.02 Aligned_cols=212 Identities=22% Similarity=0.323 Sum_probs=174.8
Q ss_pred cCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecc-cCCCCCCCcceEEEEEEeCCCCCCCccCCCC
Q 043337 25 SGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLV-QPYRDRPNEGTLSIFTEFSPMADPSFETGRP 100 (465)
Q Consensus 25 ~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~-~P~~~rp~eG~L~v~Vd~sp~as~~~~~g~~ 100 (465)
+|+|+|||.++|+|+|.|++| .|+|||+|++|+|+|+|+|+++.. .|..+.|+++.+ +|+|+|+ .|++
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~--~~~~~P~------~g~~ 73 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASI--EVVWKPM------TGQI 73 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEE--EEEEECS------SSCC
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEE--EEEeCCC------CCCC
Confidence 589999999999999999999 599999999999999999998753 345556666654 5567773 4667
Q ss_pred ChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCCCCcee
Q 043337 101 SESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180 (465)
Q Consensus 101 se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~dG~~v 180 (465)
++.+++++++|+|+|++ ||+..+.++|.|+|+++||++|||+++|+++|+++||++++||
T Consensus 74 ~~~~~e~~~li~r~l~~--------l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP------------ 133 (246)
T 3hkm_A 74 GKQEKEYEMTLKRTLQS--------ICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIP------------ 133 (246)
T ss_dssp CTTHHHHHHHHHHHHHH--------HBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCC------------
T ss_pred ChhHHHHHHHHHHHHHH--------hcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCC------------
Confidence 78889999999999875 5666777899999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccC--------------
Q 043337 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPG-------------- 246 (465)
Q Consensus 181 ~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~G-------------- 246 (465)
|+++|+++++|++.++ .+|+|||.+|++.+++.++|+++.++ +|.+++.|
T Consensus 134 --------------~~~~v~avs~g~~~~g-~~llDpt~~Ee~~~~~~~~va~~~~~-i~~lq~~g~~~~~~~~~~~i~~ 197 (246)
T 3hkm_A 134 --------------LKHLAVAIGCGVLEDG-EVILDTNKAEEQQLKSFAHLVFPNSR-KSASSKEPNQKEEDSERGLITS 197 (246)
T ss_dssp --------------BSSCEEEEEEEECTTS-CEEESCCHHHHTTCSEEEEEEEEC---------------------CCCE
T ss_pred --------------CCCceEEEEEEEEECC-EEEECCCHHHHhcCCeeEEEEEeCCc-eEEEeecccccccccccceeee
Confidence 3569999999999433 79999999999999999999999884 88888865
Q ss_pred --CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043337 247 --GEGVLQSVIMQCLRLASRMASDITKKIKDAVETY 280 (465)
Q Consensus 247 --g~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~ 280 (465)
++.+++++|.+|+++|.+.+++|+++|+++|+++
T Consensus 198 ~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (246)
T 3hkm_A 198 ITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQ 233 (246)
T ss_dssp EEEECEEHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred eccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999999999999874
No 23
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=313.76 Aligned_cols=226 Identities=19% Similarity=0.254 Sum_probs=198.7
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccCCC--C-------CCCcceEEEE
Q 043337 17 RFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQPYR--D-------RPNEGTLSIF 84 (465)
Q Consensus 17 ~fi~~~L~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P~~--~-------rp~eG~L~v~ 84 (465)
.+-...|.+|+|+|||.++++|+|.|++| +++|||+|++|+|+|+|+|+++...|.. + .+++|++.++
T Consensus 308 ~~r~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~ 387 (630)
T 3u1k_A 308 VFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLH 387 (630)
T ss_dssp HHHHHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEE
T ss_pred HHHHHHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEE
Confidence 34445667899999999999999999999 4999999999999999999997654432 1 2678999999
Q ss_pred EEeCCCCCCCcc-CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHh
Q 043337 85 TEFSPMADPSFE-TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL 163 (465)
Q Consensus 85 Vd~sp~as~~~~-~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~ 163 (465)
++|+|+++..+. .|+++.+++.++++++|+|++. || ..+.|+|+|+++||++|||.++|+++|+++||+
T Consensus 388 y~~~P~st~e~~~~g~~~rREi~~~~Li~raLr~v--i~--------~~~p~tI~V~~~VLesDGs~~~AsI~aa~lAL~ 457 (630)
T 3u1k_A 388 YEFPPYATNEIGKVTGLNRRELGHGALAEKALYPV--IP--------RDFPFTIRVTSEVLESNGSSSMASACGGSLALM 457 (630)
T ss_dssp EECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGG--SC--------TTCSSEEEEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred EEecCCcccccccCCCCChHHHHHHHHHHHHHHhh--Cc--------ccCCeEEEEEEEEEEcCCCHHHHHHHHHHHHHH
Confidence 999999987653 4778899999999999999963 33 356799999999999999999999999999999
Q ss_pred hCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECC---------ccEEEEcCCHHHHHcCcceEEEEEc
Q 043337 164 TFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS---------ESLLVIDPTHHEEAVMVGKMTATLN 234 (465)
Q Consensus 164 da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~---------~~~iLvDPT~~EE~~s~~~LtVa~~ 234 (465)
|+++| |++++.++++|++++ .+.+|+||+..|+..++..+.|+.+
T Consensus 458 dAGIP--------------------------l~~~Vaavs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t 511 (630)
T 3u1k_A 458 DSGVP--------------------------ISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGT 511 (630)
T ss_dssp HTTCC--------------------------CSSCCEEEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEEC
T ss_pred hCCCC--------------------------cccceEEEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEEec
Confidence 99999 356899999999982 1278999999999999999999999
Q ss_pred CCCCEEEEEccCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 235 ANGDVCAIQKPGGE-GVLQSVIMQCLRLASRMASDITKKIKDAVET 279 (465)
Q Consensus 235 ~~g~I~~i~k~Gg~-~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~ 279 (465)
.+| |+.+++.|.. +++.++|.+|+++|.+++.+|+..+++++.+
T Consensus 512 ~~g-It~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I~~~m~~al~~ 556 (630)
T 3u1k_A 512 NKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISK 556 (630)
T ss_dssp SSC-EEEEEEEECSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCc-eEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 9999988753 7999999999999999999999999999987
No 24
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.4e-34 Score=318.84 Aligned_cols=240 Identities=19% Similarity=0.257 Sum_probs=195.9
Q ss_pred CCccHHHHHHHHHh-cCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEEeeccc--CCCC---CCCcceE
Q 043337 11 LTVNEKRFIETALS-SGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVTGQLVQ--PYRD---RPNEGTL 81 (465)
Q Consensus 11 lS~~e~~fi~~~L~-~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~~ei~~--P~~~---rp~eG~L 81 (465)
++.-++.|+++.+. +++|+|||.++++|+|.|++|. ++|||+|++|+|+|+|+|+..... +.++ .+++|++
T Consensus 303 ~~~~~k~~vr~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~ 382 (723)
T 3cdi_A 303 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 382 (723)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSE
T ss_pred HHHHHHHHHHHHHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEE
Confidence 45567888888876 8999999999999999999994 999999999999999999643322 2222 3577999
Q ss_pred EEEEEeCCCCCCCcc-CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHH
Q 043337 82 SIFTEFSPMADPSFE-TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALA 160 (465)
Q Consensus 82 ~v~Vd~sp~as~~~~-~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~a 160 (465)
.++++|+|++++.+. .|.++.+++.++++++|+|++. |+++. .+.|+|+|+++||++|||+++|+++|+++
T Consensus 383 ~~~y~~~P~st~e~~r~g~p~~REi~~~~li~raL~~v--I~~~~------~~p~tI~Vd~~VLesdGs~~~Asi~aa~l 454 (723)
T 3cdi_A 383 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAV--MPDMD------KFPYTVRVVSEITESNGSSSMASVCGASL 454 (723)
T ss_dssp EEEEECCGGGGTCCCCC-----CTTHHHHHHHHHHHTT--SCCSS------SSCSCEEEEEEEEECSSCHHHHHHHHHHH
T ss_pred EEEEecCCCCccccccCCCCCHHHHHHHHHHHHHHHHh--cCccc------CCCEEEEEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999987663 4556778889999999999973 66543 36799999999999999999999999999
Q ss_pred HHhhCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCcc--EEEEcCCHHHHHcCcceEEEEEcCCCC
Q 043337 161 SLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSES--LLVIDPTHHEEAVMVGKMTATLNANGD 238 (465)
Q Consensus 161 AL~da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~--~iLvDPT~~EE~~s~~~LtVa~~~~g~ 238 (465)
||+|+++|. .+++.++++|++++++ .+|+||+..|+..++..++|+.+.+|
T Consensus 455 AL~dAgVPl--------------------------~~~vaavs~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va~t~~g- 507 (723)
T 3cdi_A 455 ALMDAGVPI--------------------------KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG- 507 (723)
T ss_dssp HHHHTTCCC--------------------------SSCCEEEEEEEEEETTEEEEESSCCGGGGGGCSEEEEEEECSSC-
T ss_pred HHhcCCCCc--------------------------ccceeeEEEEEEcCCCceEEEECCChHHhhhccceeeecccCCc-
Confidence 999999993 4588999999997332 58999999999999999999999888
Q ss_pred EEEEEccCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 043337 239 VCAIQKPGG-EGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285 (465)
Q Consensus 239 I~~i~k~Gg-~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~ 285 (465)
||.+++.|. .+++.++|.+|+++|.+.+.+|+..|+++|.+...+..
T Consensus 508 I~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~~~~~~~ 555 (723)
T 3cdi_A 508 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 555 (723)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred eEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcc
Confidence 999999864 57999999999999999999999999999988655443
No 25
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=4.5e-33 Score=297.81 Aligned_cols=231 Identities=20% Similarity=0.270 Sum_probs=190.9
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEE-eeccc---C-CCCCCCcceEEEEE
Q 043337 14 NEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVT-GQLVQ---P-YRDRPNEGTLSIFT 85 (465)
Q Consensus 14 ~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~-~ei~~---P-~~~rp~eG~L~v~V 85 (465)
..+.+....|.+|+|+|||.++++|+|.|++| +++|||+|++|+|+|+|+|+ ++... | ....+++|++.+++
T Consensus 301 ~~~~~R~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y 380 (549)
T 3gme_A 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHY 380 (549)
T ss_dssp HHHHHHHHHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEE
Confidence 33444445678999999999999999999999 49999999999999999995 55321 1 11124679999999
Q ss_pred EeCCCCCCCc-cCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhh
Q 043337 86 EFSPMADPSF-ETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLT 164 (465)
Q Consensus 86 d~sp~as~~~-~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~d 164 (465)
+|+|+++... ..|+++.++++++++++|+|++. |+++. .+.|+|+|++.||++|||.++|+++|+++||+|
T Consensus 381 ~~~P~st~e~~~~g~~~~Reie~~~li~raL~~v--I~~~~------~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~D 452 (549)
T 3gme_A 381 NFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAV--MPDMD------KFPYTVRVVSEITESNGSSSMASVCGASLALMD 452 (549)
T ss_dssp ECCGGGTTCCCCSSCCCSSHHHHHHHHHHHHTTT--CCCTT------TCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCCcccCCCCChhHHHHHHHHHHHHHHh--cCccc------cCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 9999998764 34678889999999999999974 66433 357899999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCc--cEEEEcCCHHHHHcCcceEEEEEcCCCCEEEE
Q 043337 165 FRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSE--SLLVIDPTHHEEAVMVGKMTATLNANGDVCAI 242 (465)
Q Consensus 165 a~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~--~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i 242 (465)
+++| |++++.++++|+++++ +.+|+||+..|+..++..+.|+.+.+| ++.+
T Consensus 453 AGvP--------------------------m~~~Vaavs~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va~t~~g-ital 505 (549)
T 3gme_A 453 AGVP--------------------------IKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISAL 505 (549)
T ss_dssp HTCC--------------------------CSSCCEEEEEEEEEETTEEEEEESCCHHHHHHSSEEEEEEECSSC-EEEE
T ss_pred CCCC--------------------------cccceeEEEEEEEcCCCceEEEecCChHHHccCCceEEEEecCCC-eEEE
Confidence 9999 3568999999999753 268999999999999999999988777 7777
Q ss_pred EccCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043337 243 QKPGG-EGVLQSVIMQCLRLASRMASDITKKIKDAVET 279 (465)
Q Consensus 243 ~k~Gg-~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~ 279 (465)
+..+. .+++.++|.+|+++|.+.+.+|+..+++++.+
T Consensus 506 qmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~ 543 (549)
T 3gme_A 506 QMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 (549)
T ss_dssp EEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 75431 24899999999999999999999999999876
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=8.6e-33 Score=305.57 Aligned_cols=232 Identities=21% Similarity=0.244 Sum_probs=198.3
Q ss_pred cHHHHHHHHH-hcCCCCCCCCCCCCcceEEEecC---CCceEEEEeCCeEEEEEEE-eecccC-C---CCCCCcceEEEE
Q 043337 14 NEKRFIETAL-SSGIRIDGRNPFEYRKLSIKFGR---EDGSSEVQLGQTHIMGFVT-GQLVQP-Y---RDRPNEGTLSIF 84 (465)
Q Consensus 14 ~e~~fi~~~L-~~giR~DGR~~~e~R~I~I~~G~---AdGSA~V~~G~T~Vi~~V~-~ei~~P-~---~~rp~eG~L~v~ 84 (465)
-++.|+++.+ .+++|+|||.++++|+|.|++|. ++|||+|++|+|+|+|+|+ ++...+ . ...+++|++.++
T Consensus 341 ~~k~~~r~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~ 420 (757)
T 1e3p_A 341 LTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHN 420 (757)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEE
Confidence 3556666665 58999999999999999999994 9999999999999999996 554321 1 124677999999
Q ss_pred EEeCCCCCCCcc-CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHh
Q 043337 85 TEFSPMADPSFE-TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL 163 (465)
Q Consensus 85 Vd~sp~as~~~~-~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~ 163 (465)
++|+|+++..+. .++++.++++++++++|+|++. |+. .+.+.|.|+|+++||++|||+++|+++|+++||+
T Consensus 421 y~f~P~st~e~~~~g~~~~reie~~~li~raL~~v--I~~------~~~~P~tI~V~~~VLesDGs~~~Asi~aa~lAL~ 492 (757)
T 1e3p_A 421 YNFPPYSVGETGRVGSPKRREIGHGALAERAIVPV--LPT------REEFPYAIRQVSEALGSNGSTSMGSVCASTMSLL 492 (757)
T ss_dssp EECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGG--CCC------TTTSCEEEEEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred EEeCCcccccccCCCCCchhHHHHHHHHHHHHHHh--ccc------cccCCEEEEEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999987664 4678899999999999999975 321 2457899999999999999999999999999999
Q ss_pred hCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECC------ccEEEEcCCHHHHHcCcceEEEEEcCCC
Q 043337 164 TFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSS------ESLLVIDPTHHEEAVMVGKMTATLNANG 237 (465)
Q Consensus 164 da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~------~~~iLvDPT~~EE~~s~~~LtVa~~~~g 237 (465)
|+++|. .++++++++|++.+ .+.+|+||+..|+..++..++|+.+. +
T Consensus 493 dAgIP~--------------------------k~~Vaavs~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va~t~-~ 545 (757)
T 1e3p_A 493 NAGVPL--------------------------KAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTK-E 545 (757)
T ss_dssp HHTCCC--------------------------SSCCEEEEEEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEEECS-S
T ss_pred HcCCCc--------------------------ccceEEEEEEEEecCCCCccceeEEeCCCHHHHhccCceEEEEecC-C
Confidence 999993 45789999999932 23789999999999999999999665 5
Q ss_pred CEEEEEccCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043337 238 DVCAIQKPGG-EGVLQSVIMQCLRLASRMASDITKKIKDAVETY 280 (465)
Q Consensus 238 ~I~~i~k~Gg-~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~ 280 (465)
.||.+++.|. .+++.+.|.+|+++|.+.+.+|+..++++|.+.
T Consensus 546 ~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~al~~~ 589 (757)
T 1e3p_A 546 FVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEAIDTP 589 (757)
T ss_dssp SEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred eEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6999998875 578999999999999999999999999999874
No 27
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=9.4e-33 Score=303.30 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=194.1
Q ss_pred HHHHHhcCCCCCCCCCCCCcceEEEec---CCCceEEEEeCCeEEEEEEE-eecccCC----CCCCCcceEEEEEEeCCC
Q 043337 19 IETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVT-GQLVQPY----RDRPNEGTLSIFTEFSPM 90 (465)
Q Consensus 19 i~~~L~~giR~DGR~~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~-~ei~~P~----~~rp~eG~L~v~Vd~sp~ 90 (465)
-...+.+|+|+|||.++++|+|.|++| +++|||+|++|+|+|+|+|+ ++...+. ...+++|++.++++|+|+
T Consensus 322 r~~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~ 401 (726)
T 4aid_A 322 RRGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPY 401 (726)
T ss_dssp HHHHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGG
T ss_pred HHHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCC
Confidence 334567899999999999999999999 49999999999999999995 5543211 123467899999999999
Q ss_pred CCCCcc-CCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCC
Q 043337 91 ADPSFE-TGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPE 169 (465)
Q Consensus 91 as~~~~-~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~ 169 (465)
++..+. +|+++.++++++++++|+|++. |+. .+.+.|+|+|++.||++|||.++|+++|+++||+|+++|
T Consensus 402 st~er~~~g~~~~Reie~~~li~raL~~v--I~~------~~~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIP- 472 (726)
T 4aid_A 402 SVGETGRMGSPGRREIGHGKLAWRALRPM--LPT------KEDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVP- 472 (726)
T ss_dssp GGTCCCCCSSCCHHHHHHHHHHHHHHGGG--SCC------TTTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCC-
T ss_pred cccccccCCCcchhhHHHHHHHHHHHHHh--cCc------cccCCeEEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCc-
Confidence 876543 4678889999999999999974 332 245789999999999999999999999999999999999
Q ss_pred cccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCc--cEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccCC
Q 043337 170 CSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSE--SLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGG 247 (465)
Q Consensus 170 v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~--~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~Gg 247 (465)
|.+++.++++|+++++ +.+|+||+..|+..++..+.|+.+..| |+.++..|.
T Consensus 473 -------------------------m~~~VaavsvGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~t~~g-It~lQ~d~k 526 (726)
T 4aid_A 473 -------------------------LVRPVSGIAMGLILEQDGFAVLSDILGDEDHLGDMDFKVAGTSEG-LTSLQMDIK 526 (726)
T ss_dssp -------------------------CSSCCEEEEEEEEECSSCEEEEESCCTTGGGGSSEEEEEEEETTE-EEEEEEEEC
T ss_pred -------------------------cccCeeEEEEEEEcCCCceEEEecCChhHHhcCCceEEEEecCCc-eEEEEecCC
Confidence 3468899999999752 357899999999999999999987765 999998873
Q ss_pred -CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043337 248 -EGVLQSVIMQCLRLASRMASDITKKIKDAVETY 280 (465)
Q Consensus 248 -~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~ 280 (465)
.+++.++|.+|+++|.+.+.+|+..+++++.+.
T Consensus 527 ~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~~ 560 (726)
T 4aid_A 527 IAGITPAIMEQALAQAKEGRAHILGEMNKAMDAP 560 (726)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999864
No 28
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.97 E-value=8.8e-31 Score=284.81 Aligned_cols=246 Identities=20% Similarity=0.251 Sum_probs=202.5
Q ss_pred CCcceEEEec---C-CCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEEEEeC--CCCCC----Cc--cCCCCChh
Q 043337 36 EYRKLSIKFG---R-EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFS--PMADP----SF--ETGRPSES 103 (465)
Q Consensus 36 e~R~I~I~~G---~-AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~Vd~s--p~as~----~~--~~g~~se~ 103 (465)
.-|++.|++| + |+|||+|++|+|+|+|+|+++...| +. ++++++|+|. +++.. .| +.|+|++.
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~----~~-df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~ 87 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS----PS-QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDK 87 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC----SS-SSCCEEEEEECSEETTTTEECTTC-----CCHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCC----CC-CeeEEEEEEEecccccCCCCccccccCCCCCHH
Confidence 4689999999 3 9999999999999999999986432 22 5666666664 44431 23 24789999
Q ss_pred HHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCH--HHHHHHHHHHHHhhCCCCCcccCCCCCceeE
Q 043337 104 AVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNL--VDAANIAALASLLTFRRPECSLGGEDDLEVI 181 (465)
Q Consensus 104 e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnl--lDaa~~Aa~aAL~da~IP~v~~~~~dG~~v~ 181 (465)
+++++|+|+|.||++ ++..++|.+.|+++||++||+. ..+++||+++||++++||
T Consensus 88 e~lisRlIdR~lRp~----------~~~~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP------------- 144 (630)
T 3u1k_A 88 EILTSRIIDRSIRPL----------FPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIP------------- 144 (630)
T ss_dssp HHHHHHHHHHHHGGG----------SCTTCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSC-------------
T ss_pred HHHHHHHHhHHhhhc----------ccccCCCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCC-------------
Confidence 999999999999986 5566789889999999999997 557889999999999999
Q ss_pred eCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccCCCccCHHHHHHHHHH
Q 043337 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRL 261 (465)
Q Consensus 182 i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~Gg~~is~~~L~~~i~~ 261 (465)
|++++.+|++|++++ .+|+|||.+|++.++..|+|+++..|.|++++.. +..++.++|.+|+++
T Consensus 145 -------------~~~~vaav~vg~i~g--~~vldPt~~E~~~s~~dl~Va~t~~~~i~mve~~-~~~~se~~~~~al~~ 208 (630)
T 3u1k_A 145 -------------WNGPVGAVRIGIIDG--EYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEAS-AENILQQDFCHAIKV 208 (630)
T ss_dssp -------------CCCCCEEEEEEEETT--EEEESCCHHHHHTEEEEEEEEEETTTEEEEEEEE-EEEECHHHHHHHHHH
T ss_pred -------------cCCCeEEEEEEEECC--EEEECCCHHHHhhCCceEEEEEccCCcEEEEECC-CccCCHHHHHHHHHH
Confidence 345889999999998 8999999999999999999999988889999865 456999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCcce---e------------cce-eeecccccCCCcchhhHHHHHHhh
Q 043337 262 ASRMASDITKKIKDAVETYNTERALRKIKRHPTSIT---L------------DGS-VNLKEKLNEPSGHNVVNELSRKHL 325 (465)
Q Consensus 262 A~~~a~~I~~~I~~~l~~~~~er~~~~~k~~~~~~~---~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 325 (465)
|.+.++.|+++++++++. .+|.|+...... . .+. +.....|+|..|+.++++|+.+.+
T Consensus 209 a~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~ 282 (630)
T 3u1k_A 209 GVKYTQQIIQGIQQLVKE------TGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTE 282 (630)
T ss_dssp HHHHHHHHHHHHHHHHHH------HTCCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Confidence 999999999999999998 778887754221 1 111 444445889999999999999999
Q ss_pred hccccc
Q 043337 326 EKPRLA 331 (465)
Q Consensus 326 ~~~~~~ 331 (465)
++|.+.
T Consensus 283 ~~~~~~ 288 (630)
T 3u1k_A 283 EQLKEK 288 (630)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 999654
No 29
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=99.97 E-value=6.6e-34 Score=273.87 Aligned_cols=199 Identities=20% Similarity=0.232 Sum_probs=156.9
Q ss_pred CCCCcceEEEec---CCCceEEEEeCCeEEEEEEEeecccC-CCCCCCcceEEEEEEeCCCCCCCccCCCCChhHHHHHH
Q 043337 34 PFEYRKLSIKFG---REDGSSEVQLGQTHIMGFVTGQLVQP-YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGR 109 (465)
Q Consensus 34 ~~e~R~I~I~~G---~AdGSA~V~~G~T~Vi~~V~~ei~~P-~~~rp~eG~L~v~Vd~sp~as~~~~~g~~se~e~~lsr 109 (465)
.+|+|+|.|++| .|+|||+|++|+|+|+|+|+++...+ ..+.++ +..++|+|+|++ |++++. ++++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~--~~~l~v~~~p~~------G~~~~~--e~~~ 71 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDE--AMTLDISYRANC------GDNKFN--VLNN 71 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC---------------CCCSSCCC------C--CCS--SCTT
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcccccCCc--eEEEEEEEcCCC------CCCCHH--HHHH
Confidence 479999999999 49999999999999999999987432 223344 455678898864 444444 7899
Q ss_pred HHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCCCcccCCCCCceeEeCCCCCCC
Q 043337 110 IVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEERE 189 (465)
Q Consensus 110 lL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP~v~~~~~dG~~v~i~~~~~~~ 189 (465)
+|+|.|++. ++++. + ++|.|+|+++||++||++++|+++|+++||++++||
T Consensus 72 li~r~l~~~--i~~~~---~---p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP--------------------- 122 (222)
T 3krn_A 72 IIHSTLSNA--INLEL---F---PHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP--------------------- 122 (222)
T ss_dssp HHHHC--CC--SCC-----------CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCC---------------------
T ss_pred HHHHHHHHh--ccHHh---C---CCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCC---------------------
Confidence 999999986 44433 3 369999999999999999999999999999999999
Q ss_pred CCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEE---cC-CCCEEEEEccCCCccCHHHHHHHHHHHHHH
Q 043337 190 PLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATL---NA-NGDVCAIQKPGGEGVLQSVIMQCLRLASRM 265 (465)
Q Consensus 190 ~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~---~~-~g~I~~i~k~Gg~~is~~~L~~~i~~A~~~ 265 (465)
|+++|++||+|++++ .+|+|||..|+..+++.++|++ +. .++|++++..| .++.++|.+|+++|.+.
T Consensus 123 -----~~~~v~avsvg~~~g--~~llDpt~~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g--~~~~~~l~~~l~~a~~~ 193 (222)
T 3krn_A 123 -----FETVFCGVLIVRVKD--ELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIG--HWDFIQLEAAWSLAQPS 193 (222)
T ss_dssp -----TTSCCCCCCCEECSS--SEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCBS--SCTTHHHHTHHHHTTHH
T ss_pred -----ccCcEEEEEEEEECC--EEEeCCCHHHHhccCccEEEEEEccCCCCCCEEEEEEeC--CcCHHHHHHHHHHHHHH
Confidence 346889999999887 8999999999999999999999 75 68899999876 69999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 043337 266 ASDITKKIKDAVETY 280 (465)
Q Consensus 266 a~~I~~~I~~~l~~~ 280 (465)
+++|+++++++++++
T Consensus 194 ~~~i~~~~~~~l~~~ 208 (222)
T 3krn_A 194 ASAIFDFYKTVMKRK 208 (222)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.97 E-value=2.7e-30 Score=284.78 Aligned_cols=243 Identities=15% Similarity=0.206 Sum_probs=201.5
Q ss_pred cceEEEecC----CCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEEEEeCCCCCC------Cc--cCCCCChhHH
Q 043337 38 RKLSIKFGR----EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADP------SF--ETGRPSESAV 105 (465)
Q Consensus 38 R~I~I~~G~----AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~Vd~sp~as~------~~--~~g~~se~e~ 105 (465)
|++.|++|. |+|||+|++|+|.|+|+|+++. .|. +..+|++++|+|.+.+.+ .| +.|+|++.++
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~-~~~---~~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQK-KAK---PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECS-SCC---SSCCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecC-CCC---CCCCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 599999993 9999999999999999999974 443 445899999999987322 24 5699999999
Q ss_pred HHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCH-HH-HHHHHHHHHHhhCCCCCcccCCCCCceeEeC
Q 043337 106 ELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNL-VD-AANIAALASLLTFRRPECSLGGEDDLEVIVH 183 (465)
Q Consensus 106 ~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnl-lD-aa~~Aa~aAL~da~IP~v~~~~~dG~~v~i~ 183 (465)
+++|+|+|.||+. ||..++|.++|+++||++||+. +| ++++||++||+.++|| |+
T Consensus 96 l~sRlIdR~lRpl----------fp~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP---~~---------- 152 (723)
T 3cdi_A 96 LIARLIDRPIRPL----------FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP---FN---------- 152 (723)
T ss_dssp HHHHHHHHHHGGG----------SCTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSS---CC----------
T ss_pred HHHHHhCccchhc----------ccccCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCC---CC----------
Confidence 9999999999985 8889999999999999999985 67 8889999999999999 32
Q ss_pred CCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccCCCccCHHHHHHHHHHHH
Q 043337 184 PPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLAS 263 (465)
Q Consensus 184 ~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~Gg~~is~~~L~~~i~~A~ 263 (465)
.++.+|++|++++ .+|+|||.+|++.++..|+|+.+.++ |+|++ .|+..++.++|.+||.+|.
T Consensus 153 -------------~pv~av~vg~i~g--~~v~nPt~~e~~~s~~~lvvagt~~~-i~mve-~~~~~~se~~~~~al~~a~ 215 (723)
T 3cdi_A 153 -------------GPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGTEAA-VLMVE-SEAQLLSEDQMLGAVVFGH 215 (723)
T ss_dssp -------------CCCCCEEEEEETT--EEEESCCTTGGGGCSEEEEEEECSSC-EEEEE-EEEEEECHHHHHHHHHHHH
T ss_pred -------------CCeEEEEEEEECC--EEEECcCHHHHHhCCceEEEEccCCE-EEEEe-CCCCCCCHHHHHHHHHHHH
Confidence 4678999999997 89999999999999999999987654 87777 5567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhccCCCcce------ecc---e----eeecccccCCCcchhhHHHHHHhhhcccc
Q 043337 264 RMASDITKKIKDAVETYNTERALRKIKRHPTSIT------LDG---S----VNLKEKLNEPSGHNVVNELSRKHLEKPRL 330 (465)
Q Consensus 264 ~~a~~I~~~I~~~l~~~~~er~~~~~k~~~~~~~------~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (465)
+.++.|++++++++++ .+|.|+...... ..+ + ...-..++|..|+.++++|+.+.++++.+
T Consensus 216 ~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~ 289 (723)
T 3cdi_A 216 EQQQVVIQNINELVKE------AGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA 289 (723)
T ss_dssp HHTHHHHHHHHHHHHH------TCCCCCCCCCCCCCTTGGGSSTTTTHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998 777776653321 111 1 11112478999999999999999999843
No 31
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.96 E-value=8.4e-29 Score=264.84 Aligned_cols=246 Identities=15% Similarity=0.191 Sum_probs=184.5
Q ss_pred CCcceEEEecC----CCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEEEEeCCCCC------CCc--cCCCCChh
Q 043337 36 EYRKLSIKFGR----EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMAD------PSF--ETGRPSES 103 (465)
Q Consensus 36 e~R~I~I~~G~----AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~Vd~sp~as------~~~--~~g~~se~ 103 (465)
.-|++.|++|. |+||++|++|+|+|+|+|+++.. |. +..+|++++|+|..... ..| +.|+|+++
T Consensus 12 ~~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~-~~---~g~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~ 87 (549)
T 3gme_A 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK-AK---PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEG 87 (549)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSS-CC---TTCCSCCEEEEEEECGGGTTCCCSCC-----CCCHH
T ss_pred CCEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCC-CC---CCCCCccceeeeeeehhhcccCCCcCcCcCCCCChh
Confidence 35899999992 99999999999999999999753 22 34578999999964321 122 34899999
Q ss_pred HHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCC-CHHH-HHHHHHHHHHhhCCCCCcccCCCCCceeE
Q 043337 104 AVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGG-NLVD-AANIAALASLLTFRRPECSLGGEDDLEVI 181 (465)
Q Consensus 104 e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DG-nllD-aa~~Aa~aAL~da~IP~v~~~~~dG~~v~ 181 (465)
+++++|+|+|.||+. ||..+.+.+.|+++||++|| +.+| ++++|+++||+.++|| |
T Consensus 88 ~~l~~RlIdR~lRpl----------fp~~~~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP---~--------- 145 (549)
T 3gme_A 88 ETLIARLIDRPIRPL----------FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIP---F--------- 145 (549)
T ss_dssp HHHHHHHHHHHHGGG----------SCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSC---C---------
T ss_pred hhHHHHHhCCccccc----------cccCCcccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCC---c---------
Confidence 999999999999985 77778888999999999988 4567 5579999999999999 2
Q ss_pred eCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccCCCccCHHHHHHHHHH
Q 043337 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRL 261 (465)
Q Consensus 182 i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~Gg~~is~~~L~~~i~~ 261 (465)
+.++.+|++|++++ .+|+|||++|++.++..|+|+.+.++ |++++.. +..++.+++.+++.+
T Consensus 146 --------------~gpvaaV~Vg~i~g--~~vlnPt~~e~~~s~~dl~va~t~~~-i~mve~e-~~~~se~~~~~al~~ 207 (549)
T 3gme_A 146 --------------NGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGTEAA-VLMVESE-AELLSEDQMLGAVVF 207 (549)
T ss_dssp --------------CCCCEEEEEEEETT--EEEESCCTTTTTTCSBCEEEEECSSC-EEEEEEE-EEEECHHHHHHHHHH
T ss_pred --------------CCCeeEEEEEEECC--EEEECCCHHHHhhCceEEEEEecCCe-EEEEEcc-CCCCCHHHHHHHHHH
Confidence 34789999999998 89999999999999999999998776 8899844 468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccee------cce-------eeecccccCCCcchhhHHHHHHhhhcc
Q 043337 262 ASRMASDITKKIKDAVETYNTERALRKIKRHPTSITL------DGS-------VNLKEKLNEPSGHNVVNELSRKHLEKP 328 (465)
Q Consensus 262 A~~~a~~I~~~I~~~l~~~~~er~~~~~k~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (465)
|.+.++.|+++++++++. .+|.|+....... .+. -..-..++|..|+.++++|+.+.+++|
T Consensus 208 a~~~i~~l~~~q~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~~~~~~~ 281 (549)
T 3gme_A 208 GHEQQQVVIQNINELVKE------AGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL 281 (549)
T ss_dssp HHHHTHHHHHHHHHHHHH------HCCCCCCCCCCCCCHHHHTTC--------------CCHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHH------hCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 7777776543311 111 111123789999999999999999999
Q ss_pred ccc
Q 043337 329 RLA 331 (465)
Q Consensus 329 ~~~ 331 (465)
.+.
T Consensus 282 ~~~ 284 (549)
T 3gme_A 282 LAE 284 (549)
T ss_dssp ---
T ss_pred hhh
Confidence 654
No 32
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.96 E-value=3.4e-28 Score=267.22 Aligned_cols=244 Identities=17% Similarity=0.210 Sum_probs=203.1
Q ss_pred CCcceEEEecC----CCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEEEEeCCCCC------CCc--cCCCCChh
Q 043337 36 EYRKLSIKFGR----EDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMAD------PSF--ETGRPSES 103 (465)
Q Consensus 36 e~R~I~I~~G~----AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~Vd~sp~as------~~~--~~g~~se~ 103 (465)
.-|++.|++|. |+||++|++|+|+|+|+|+++.. |. +..+|++++|+|..... ..| +.|+|+++
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~-~~---~g~df~pltveY~ek~~a~G~iPg~~~~REGrps~~ 101 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKS-QK---PGQDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEK 101 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSS-CC---TTCCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCC-CC---CCCCCcCceeeeeeehhhcccCCCcccCCCCCCCch
Confidence 46899999992 99999999999999999999753 22 34578899999964321 122 34899999
Q ss_pred HHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCC-HHHH-HHHHHHHHHhhCCCCCcccCCCCCceeE
Q 043337 104 AVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGN-LVDA-ANIAALASLLTFRRPECSLGGEDDLEVI 181 (465)
Q Consensus 104 e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGn-llDa-a~~Aa~aAL~da~IP~v~~~~~dG~~v~ 181 (465)
+++++|+|+|.||+. +|..+.|.+.|+++||++||+ .+|+ +++|+++||++++|| |
T Consensus 102 ~~li~RlIdR~lRpl----------f~~~~~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP---~--------- 159 (726)
T 4aid_A 102 ETLVSRLIDRPIRPL----------FVKGFKNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAP---F--------- 159 (726)
T ss_dssp HHHHHHHHHHHHGGG----------BCTTCCSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCS---B---------
T ss_pred hhhHHHHhCCccccc----------cccCCccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCC---c---------
Confidence 999999999999985 777778899999999999986 5665 779999999999999 2
Q ss_pred eCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEccCCCccCHHHHHHHHHH
Q 043337 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRL 261 (465)
Q Consensus 182 i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~Gg~~is~~~L~~~i~~ 261 (465)
++++.+|++|++++ .+|+|||++|++.++..|+|+.+..+ |++++.. +..++.++|.+++.+
T Consensus 160 --------------~~~vaaV~Vg~i~g--~~vldPt~~E~~~s~~dl~va~t~~~-i~mve~~-~~~~se~~~~~al~~ 221 (726)
T 4aid_A 160 --------------MGPIGAARVGWVDG--AYVLNPTLDEMKESKMDLVVAGTADA-VMMVESE-IQELSEEIVLGGVNF 221 (726)
T ss_dssp --------------CCCCEEEEEEEETT--EEEESCCHHHHHTCSEEEEEEECSSC-EEEEEEE-ESSBCHHHHHHHHHH
T ss_pred --------------CCCeEEEEEEEECC--EEEECCCHHHHhhCceeEEEEEeCCe-EEEEEcc-CCCCCHHHHHHHHHH
Confidence 35789999999998 89999999999999999999998887 9998844 468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCccee-------------cce-eeecccccCCCcchhhHHHHHHhhhc
Q 043337 262 ASRMASDITKKIKDAVETYNTERALRKIKRHPTSITL-------------DGS-VNLKEKLNEPSGHNVVNELSRKHLEK 327 (465)
Q Consensus 262 A~~~a~~I~~~I~~~l~~~~~er~~~~~k~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (465)
|.+.++.|+.+++++++. .+|.|+....... .+. +. ..++|..|+.++++|+.+.+++
T Consensus 222 a~~~i~~l~~~q~~~~~~------~g~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~r~~~~~~~~~~~~~~ 293 (726)
T 4aid_A 222 AHQQMQAVIDAIIDLAEH------AAKEPFAFEPEDTDAIKAKMKDLVGADIAAAY--KIQKKQDRYEAVGAAKKKAIAA 293 (726)
T ss_dssp HHHHTHHHHHHHHHHHHH------HCCCCCCCCCCTTHHHHHHHHHHHHHHHHHHH--HCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH------hCCCcccCCCCCCHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 7777776543310 111 22 2478999999999999999999
Q ss_pred cccc
Q 043337 328 PRLA 331 (465)
Q Consensus 328 ~~~~ 331 (465)
|.+.
T Consensus 294 ~~~~ 297 (726)
T 4aid_A 294 LGLS 297 (726)
T ss_dssp TTCC
T ss_pred hhhh
Confidence 9654
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.95 E-value=3.2e-26 Score=253.21 Aligned_cols=246 Identities=20% Similarity=0.146 Sum_probs=201.5
Q ss_pred CcceEEEecC----CCceEEEEe-CCeEEEEEEEeecccCCCCCCCcceEEEEEEeCCCCC------CCc--cCCCCChh
Q 043337 37 YRKLSIKFGR----EDGSSEVQL-GQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMAD------PSF--ETGRPSES 103 (465)
Q Consensus 37 ~R~I~I~~G~----AdGSA~V~~-G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~Vd~sp~as------~~~--~~g~~se~ 103 (465)
-|++.+++|. |+||+++++ |+|+|+|+|+++.. |. |...|++++|+|..... ..| +.|++++.
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~-~~---~~~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~ 111 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKN-PK---DQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSED 111 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEE-EC---TTCSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCC-CC---CCCCCccEEEEEEecccccccCCCcccccCcCCChH
Confidence 4899999994 999999999 99999999999753 22 33358889999964321 123 34899999
Q ss_pred HHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCH--HHHHHHHHHHHHhhCCCCCcccCCCCCceeE
Q 043337 104 AVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNL--VDAANIAALASLLTFRRPECSLGGEDDLEVI 181 (465)
Q Consensus 104 e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnl--lDaa~~Aa~aAL~da~IP~v~~~~~dG~~v~ 181 (465)
+++++|+|+|.||+. ||..+...+.|+++||++||.. ..+++|||++||++++||
T Consensus 112 e~l~~RlIdR~LRpl----------fp~~~~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP------------- 168 (757)
T 1e3p_A 112 AILTCRLIDRPLRPS----------FKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP------------- 168 (757)
T ss_dssp HHHHHHHHHHHHGGG----------BCTTBCEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSS-------------
T ss_pred HHHHHHHHCCcchhc----------cccCCCCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCC-------------
Confidence 999999999999984 7777777899999999999853 567789999999999999
Q ss_pred eCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcC----CCCEEEEEc-----------cC
Q 043337 182 VHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNA----NGDVCAIQK-----------PG 246 (465)
Q Consensus 182 i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~----~g~I~~i~k-----------~G 246 (465)
|.+++.+|++|++++ .+|+|||+.|++.++..|+|+.+. .+.|.|++. .+
T Consensus 169 -------------~~~~vaav~vg~~~g--~~vlnPt~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~ 233 (757)
T 1e3p_A 169 -------------FSGPIGGVRVALIRG--QWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDG 233 (757)
T ss_dssp -------------BCCCCEEEEEEEETT--EEEESCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTT
T ss_pred -------------CCCceEEEEEEEECC--EEEECCCHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccc
Confidence 235789999999998 899999999999999999999984 456888886 25
Q ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCCc-ce--e----cc---e----eeecccccCCC
Q 043337 247 GEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTS-IT--L----DG---S----VNLKEKLNEPS 312 (465)
Q Consensus 247 g~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~~~~~k~~~~~-~~--~----~~---~----~~~~~~~~~~~ 312 (465)
+..++.++|.++|++|.+.++.|+.+++++++. .+|.|+.... .. . .+ + ...-..++|..
T Consensus 234 ~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 307 (757)
T 1e3p_A 234 AEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAK------AAKPTGEFPVFLDYQDDVLEALSAAVRPELSAALTIAGKQD 307 (757)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCCCBCCSCCHHHHHHHHHHHHHHHHHHTTCCSHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 678999999999999999999999999999987 7788877654 11 1 11 1 11112578999
Q ss_pred cchhhHHHHHHhhhcccc
Q 043337 313 GHNVVNELSRKHLEKPRL 330 (465)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~ 330 (465)
|+.++++|+.+.+++|.+
T Consensus 308 r~~~~~~~~~~~~~~~~~ 325 (757)
T 1e3p_A 308 REAELDRVKALAAEKLLP 325 (757)
T ss_dssp HHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999998843
No 34
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=82.77 E-value=0.81 Score=38.06 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=14.4
Q ss_pred HhcCCCCCCCCCCCCc
Q 043337 23 LSSGIRIDGRNPFEYR 38 (465)
Q Consensus 23 L~~giR~DGR~~~e~R 38 (465)
|..++|+|||.+++.|
T Consensus 88 L~e~~RiDGR~~deIr 103 (104)
T 1whu_A 88 LNEYKRCDGRDSGPSS 103 (104)
T ss_dssp TTSSCSCCCCCSSCSC
T ss_pred HCCCcCCCCCCccccc
Confidence 4679999999999988
No 35
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=23.78 E-value=58 Score=22.73 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=30.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 043337 249 GVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERA 285 (465)
Q Consensus 249 ~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~ 285 (465)
.|+++.+..+-.+|.........+|++++..+..+..
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~ 51 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHD 51 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 4788899999999988888999999999988765543
Done!