BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043340
(327 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255584867|ref|XP_002533149.1| catalytic, putative [Ricinus communis]
gi|223527044|gb|EEF29230.1| catalytic, putative [Ricinus communis]
Length = 420
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/319 (73%), Positives = 253/319 (79%), Gaps = 45/319 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+PQ+FRN+LQEAGW VGR PI+RTVTAADGTVKLLIKLEDNRLIETVGIP++DEKGP+RL
Sbjct: 101 LPQAFRNELQEAGWRVGRSPIYRTVTAADGTVKLLIKLEDNRLIETVGIPIQDEKGPVRL 160
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TAC+SSQVGCPLRCSFCATGKGG+SRNL HEIV QVLAIEEIFK+RVTNVVFMGMGEPM
Sbjct: 161 TACISSQVGCPLRCSFCATGKGGYSRNLKRHEIVEQVLAIEEIFKNRVTNVVFMGMGEPM 220
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLAS+KLQSTLA+
Sbjct: 221 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRE 280
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AGVND+ EHA ELAELLHEWGRG
Sbjct: 281 TIVPSAKSYPLDAIMKDCRDYFLETSRRVSFEYALLAGVNDRAEHAKELAELLHEWGRGS 340
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIPFNPIEGSDYQRP KKAV AFA ALES KIT S+RQTRG+DASAACGQLRNEFQK
Sbjct: 341 HVNLIPFNPIEGSDYQRPSKKAVQAFAAALESRKITVSVRQTRGMDASAACGQLRNEFQK 400
Query: 308 SPLRIDSSNSSSESDIAVA 326
SPL DS + SE +IAVA
Sbjct: 401 SPLLADSDSLQSEPEIAVA 419
>gi|225449545|ref|XP_002283725.1| PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis
vinifera]
gi|296086245|emb|CBI31686.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/319 (71%), Positives = 248/319 (77%), Gaps = 45/319 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+PQ+FRNDLQE GW VGR I+++VTAADGTVKLLIKL DNRL+ETVGIPVE +KG RL
Sbjct: 88 LPQAFRNDLQEGGWRVGRSSIYQSVTAADGTVKLLIKLADNRLVETVGIPVEHDKGSFRL 147
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPLRCSFCATGKGG+SRNL HEIV QVLAIEEIFK RVTNVVFMGMGEPM
Sbjct: 148 TACVSSQVGCPLRCSFCATGKGGYSRNLQRHEIVEQVLAIEEIFKQRVTNVVFMGMGEPM 207
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLKSV+EAHRCLNKDVQIGQRMITIS+VGVPNTIKKLASYKLQSTLAI
Sbjct: 208 LNLKSVIEAHRCLNKDVQIGQRMITISSVGVPNTIKKLASYKLQSTLAISLHAPNQKLRE 267
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AGVND VEHA+ELAELLHEWG G+
Sbjct: 268 TIVPSAKSYPLDAIMKDCRDYFLETSRRVSFEYTLLAGVNDAVEHAIELAELLHEWGPGY 327
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIPFNPIEGS++QRPY KAV AFAGALES K+T S+RQTRGLDASAACGQLRNEFQK
Sbjct: 328 HVNLIPFNPIEGSEFQRPYNKAVQAFAGALESRKVTVSVRQTRGLDASAACGQLRNEFQK 387
Query: 308 SPLRIDSSNSSSESDIAVA 326
PL+ DS+N S+ D+ +A
Sbjct: 388 IPLQSDSNNLQSQLDVPIA 406
>gi|224098427|ref|XP_002311170.1| predicted protein [Populus trichocarpa]
gi|222850990|gb|EEE88537.1| predicted protein [Populus trichocarpa]
Length = 441
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/343 (68%), Positives = 253/343 (73%), Gaps = 69/343 (20%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P FRNDLQEAGW VGR PIF+TVTAADGTVKLLI+LEDNRLIETVGIPVEDEKG MRL
Sbjct: 98 LPLVFRNDLQEAGWKVGRSPIFQTVTAADGTVKLLIRLEDNRLIETVGIPVEDEKGSMRL 157
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV-----------------------GQV 149
TACVSSQVGCPLRCSFCATGKGGFSRNL HEIV QV
Sbjct: 158 TACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQHRLGSSGTTSTCSKLYLHVLYAQV 217
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
LA+EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK
Sbjct: 218 LAVEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 277
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LAS+KLQSTLA+ A
Sbjct: 278 LASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLDAIMKDCKEYFLETSRRVSFEYALLA 337
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND+VEHA ELAELLH+WGRGHHVNLIPFNPI+GSDY+RP+KKA+ AFA LES K+T
Sbjct: 338 GVNDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYKRPHKKAIQAFAAVLESRKVTV 397
Query: 285 SIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSE-SDIAVA 326
S+RQTRGLDASAACGQLRNEFQKSPL I+S + S+ ++AVA
Sbjct: 398 SVRQTRGLDASAACGQLRNEFQKSPLVINSDSLESQPENVAVA 440
>gi|449459924|ref|XP_004147696.1| PREDICTED: probable dual-specificity RNA methyltransferase
RlmN-like [Cucumis sativus]
Length = 425
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 219/312 (70%), Positives = 244/312 (78%), Gaps = 47/312 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE--KGPM 110
+P FR DLQEAGW VGR P++++VTAADGTVKLL+KL+DNRLIETVGIPVED+ KG +
Sbjct: 95 LPLKFRTDLQEAGWRVGRSPVYQSVTAADGTVKLLLKLDDNRLIETVGIPVEDKNNKGSV 154
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
RLTAC+SSQVGCPLRCSFCATGKGGFSRNL HEIV QV AIE+IF HRVTNVVFMGMGE
Sbjct: 155 RLTACISSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFNHRVTNVVFMGMGE 214
Query: 171 PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
PMLN+KSVLEAHRCLNKDVQIGQRMITISTVGVPNTI++LAS+KLQSTLA+
Sbjct: 215 PMLNMKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIQRLASHKLQSTLAVSLHAPNQKL 274
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
AGVND VEHAVELA+LLHEWG
Sbjct: 275 RETIVPSAKAYPLEALMKDCRDYFLQTSRRVSFEYALLAGVNDAVEHAVELAKLLHEWGG 334
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
G+HVNLIPFNPIEGS+YQRPYKKAV+AF ALESHKIT S+RQTRGLDA+AACGQLRN+F
Sbjct: 335 GYHVNLIPFNPIEGSEYQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAACGQLRNQF 394
Query: 306 QKSPLRIDSSNS 317
QK+PL +DS S
Sbjct: 395 QKNPLLVDSDIS 406
>gi|357492233|ref|XP_003616405.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
gi|355517740|gb|AES99363.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
Length = 431
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/310 (69%), Positives = 244/310 (78%), Gaps = 45/310 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VPQ+FRN+L+EAGW VGR PIF TV A DGTVKLL+KLEDNRLIETVGIPVEDEKG +RL
Sbjct: 87 VPQAFRNELEEAGWKVGRSPIFNTVVATDGTVKLLLKLEDNRLIETVGIPVEDEKGSVRL 146
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPL+CSFCATGKGGFSRNL SHEIV QVLAIEE+FK RVTNVVFMGMGEPM
Sbjct: 147 TACVSSQVGCPLKCSFCATGKGGFSRNLRSHEIVEQVLAIEEVFKRRVTNVVFMGMGEPM 206
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLK+VLEAHRCLNKD+QIGQRM+TISTVGVPNTIKKLA++KLQSTLA+
Sbjct: 207 LNLKAVLEAHRCLNKDIQIGQRMMTISTVGVPNTIKKLATHKLQSTLAVSLHAPNQKLRE 266
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AG+ND V++AVELA+LLHE+G G+
Sbjct: 267 TIVPSAKSYPLDALMKDCKEYFHETSRRVSFEYALLAGINDSVDNAVELAKLLHEYGSGY 326
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIPFNPIEGS+++RPY+KAV AF ALES KITTS+RQTRGLDA+AACGQLRN FQK
Sbjct: 327 HVNLIPFNPIEGSEFRRPYRKAVQAFVNALESSKITTSVRQTRGLDANAACGQLRNNFQK 386
Query: 308 SPLRIDSSNS 317
+PL +S N+
Sbjct: 387 TPLVTESDNN 396
>gi|449524008|ref|XP_004169015.1| PREDICTED: probable dual-specificity RNA methyltransferase
RlmN-like [Cucumis sativus]
Length = 422
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/312 (69%), Positives = 244/312 (78%), Gaps = 47/312 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE--KGPM 110
+P FR DLQEAGW VGR P++++VTAADGTVKLL+KL+D+RLIETVGIPVED+ KG +
Sbjct: 95 LPLKFRTDLQEAGWRVGRSPVYQSVTAADGTVKLLLKLDDSRLIETVGIPVEDKNNKGSV 154
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
RLTAC+SSQVGCPLRCSFCATGKGGFSRNL HEIV QV AIE+IF HRVTNVVFMGMGE
Sbjct: 155 RLTACISSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFNHRVTNVVFMGMGE 214
Query: 171 PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
PMLN+KSVLEAHRCLNKDVQIGQRMITISTVGVPNTI++LAS+KLQSTLA+
Sbjct: 215 PMLNMKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIQRLASHKLQSTLAVSLHAPNQKL 274
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
AGVND VEHAVELA+LLHEWG
Sbjct: 275 RETIVPSAKAYPLEALMKDCRDYFLQTSRRVSFEYALLAGVNDAVEHAVELAKLLHEWGG 334
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
G+HVNLIPFNPIEGS+YQRPYKKAV+AF ALESHKIT S+RQTRGLDA+AACGQLRN+F
Sbjct: 335 GYHVNLIPFNPIEGSEYQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAACGQLRNQF 394
Query: 306 QKSPLRIDSSNS 317
QK+PL +DS S
Sbjct: 395 QKNPLLVDSDIS 406
>gi|356551739|ref|XP_003544231.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Glycine max]
Length = 416
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/306 (70%), Positives = 237/306 (77%), Gaps = 45/306 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+PQ FRN L+E GW VGR PIF+TVTAADGTVKLL+KLEDNRL+ETVGIPV +KG RL
Sbjct: 90 LPQGFRNTLEETGWKVGRSPIFQTVTAADGTVKLLLKLEDNRLVETVGIPVMVDKGLTRL 149
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPLRCSFCATGKGGFSRNL HEI+ QVLAIEE+FK+RVTNVVFMGMGEPM
Sbjct: 150 TACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEEVFKNRVTNVVFMGMGEPM 209
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLK+VLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLAS+KLQSTLA+
Sbjct: 210 LNLKAVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRE 269
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AGVND V+HA+ELAELLH G G+
Sbjct: 270 TIVPSAKSYPLDALMSDCREYFQQTSRRVSFEYALLAGVNDSVDHALELAELLHRSGSGY 329
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIPFNPIEGS+YQRP K+AVL F+GALES KIT S+RQTRGLDA+AACGQLRN+FQK
Sbjct: 330 HVNLIPFNPIEGSEYQRPSKRAVLTFSGALESSKITVSVRQTRGLDANAACGQLRNKFQK 389
Query: 308 SPLRID 313
+PL D
Sbjct: 390 TPLVTD 395
>gi|356501059|ref|XP_003519346.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Glycine max]
Length = 416
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/306 (70%), Positives = 236/306 (77%), Gaps = 45/306 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+PQ FRN L+EAGW VGR PIF TVTAADGTVKLL+KLEDNRLIETVGIPV +KG RL
Sbjct: 90 LPQGFRNTLEEAGWKVGRSPIFETVTAADGTVKLLLKLEDNRLIETVGIPVMVDKGLTRL 149
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPLRCSFCATGKGGFSRNL HEIV QVLAIEE+FK+RVTNVVFMGMGEPM
Sbjct: 150 TACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVLAIEEVFKNRVTNVVFMGMGEPM 209
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLK+VLEAH CLNKDVQIGQRMITISTVGVPNTIKKLAS+KLQSTLA+
Sbjct: 210 LNLKAVLEAHHCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRE 269
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AGVND V HA+ELAELLH G G+
Sbjct: 270 TIVPSAKSYPLDALMSDCREYFQQTSRRVSFEYALLAGVNDSVNHALELAELLHRSGSGY 329
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIPFNPIEGS+YQRP K+AVLAF+GALES KIT S+RQTRGLDA+AACGQLRN+FQK
Sbjct: 330 HVNLIPFNPIEGSEYQRPSKRAVLAFSGALESSKITVSVRQTRGLDANAACGQLRNKFQK 389
Query: 308 SPLRID 313
+P+ D
Sbjct: 390 TPVVTD 395
>gi|222619965|gb|EEE56097.1| hypothetical protein OsJ_04941 [Oryza sativa Japonica Group]
Length = 363
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/279 (73%), Positives = 234/279 (83%), Gaps = 14/279 (5%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VP+ FR L AGW VGR P+ VTA+DGT K+L+KLEDNRLIETVGIPV+D+KGP RL
Sbjct: 79 VPKVFREALVGAGWKVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDKGPSRL 138
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPLRCSFCATGKGGF+RNL +HEIV QVLAIEE F+HRVTNVVFMGMGEPM
Sbjct: 139 TACVSSQVGCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEETFQHRVTNVVFMGMGEPM 198
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLKSVLEAHRCLNK+++IGQRMITISTVGVP+TIKKLAS+KLQSTLA+
Sbjct: 199 LNLKSVLEAHRCLNKELKIGQRMITISTVGVPSTIKKLASHKLQSTLAVSLHAPNQKLRE 258
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
G+ND EHA ELAELLH G G+HVNLIP+NPI+GS+Y+RPY+K V AF ALE+
Sbjct: 259 TIVPTGINDAKEHAEELAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEA 318
Query: 280 HKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSS 318
KIT S+RQTRGLDA+AACGQLRNEFQK+PL ++SS SS
Sbjct: 319 RKITVSVRQTRGLDANAACGQLRNEFQKNPL-LESSPSS 356
>gi|297823853|ref|XP_002879809.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325648|gb|EFH56068.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/314 (68%), Positives = 243/314 (77%), Gaps = 46/314 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPV-EDEKGPMR 111
+PQ+FR +L E G+ VGR PI++TVTA DGT+KLL+KLEDN LIETVGIPV +DEKG R
Sbjct: 98 LPQTFRKELVEGGFKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITR 157
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
LTACVSSQVGCPLRCSFCATGKGGFSRNL HEI+ QVLAIE++FKHRVTNVVFMGMGEP
Sbjct: 158 LTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEP 217
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------- 222
MLNLKSVL+AHRCLNKD++IGQRMITISTVGVPNTIKKLAS+KLQSTLA+
Sbjct: 218 MLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLR 277
Query: 223 ------------------------------------SAGVNDQVEHAVELAELLHEWGRG 246
AGVNDQVEHAVELAELL EWG+
Sbjct: 278 EKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKT 337
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+HVNLIP+NPIEGS+Y+RPYKKAVLAFA ALES KIT S+RQTRGLDASAACGQLRN+FQ
Sbjct: 338 YHVNLIPYNPIEGSEYKRPYKKAVLAFASALESRKITASVRQTRGLDASAACGQLRNKFQ 397
Query: 307 KSPLRIDSSNSSSE 320
KSPL ++ S+
Sbjct: 398 KSPLVTETDGQESQ 411
>gi|18405124|ref|NP_565909.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|15809964|gb|AAL06909.1| At2g39670/F17A14.4 [Arabidopsis thaliana]
gi|17065474|gb|AAL32891.1| Unknown protein [Arabidopsis thaliana]
gi|20197047|gb|AAB97122.2| expressed protein [Arabidopsis thaliana]
gi|23197704|gb|AAN15379.1| Unknown protein [Arabidopsis thaliana]
gi|330254610|gb|AEC09704.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 428
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/316 (68%), Positives = 243/316 (76%), Gaps = 46/316 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPV-EDEKGPMR 111
+P +FR L + G+ VGR PI++TVTA DGT+KLL+KLEDN LIETVGIPV +DEKG R
Sbjct: 107 LPLTFRKGLVDGGFKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITR 166
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
LTACVSSQVGCPLRCSFCATGKGGFSRNL HEI+ QVLAIE++FKHRVTNVVFMGMGEP
Sbjct: 167 LTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEP 226
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------- 222
MLNLKSVL+AHRCLNKD++IGQRMITISTVGVPNTIKKLAS+KLQSTLA+
Sbjct: 227 MLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLR 286
Query: 223 ------------------------------------SAGVNDQVEHAVELAELLHEWGRG 246
AGVNDQVEHAVELAELL EWG+
Sbjct: 287 EKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKT 346
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+HVNLIP+NPIEGS+YQRPYKKAVLAFA ALES KIT S+RQTRGLDASAACGQLRN+FQ
Sbjct: 347 YHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQ 406
Query: 307 KSPLRIDSSNSSSESD 322
KSPL ++ + S+ D
Sbjct: 407 KSPLLTETDSQESQPD 422
>gi|30687969|ref|NP_850319.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|330254611|gb|AEC09705.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 431
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/316 (68%), Positives = 243/316 (76%), Gaps = 46/316 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPV-EDEKGPMR 111
+P +FR L + G+ VGR PI++TVTA DGT+KLL+KLEDN LIETVGIPV +DEKG R
Sbjct: 110 LPLTFRKGLVDGGFKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITR 169
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
LTACVSSQVGCPLRCSFCATGKGGFSRNL HEI+ QVLAIE++FKHRVTNVVFMGMGEP
Sbjct: 170 LTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRVTNVVFMGMGEP 229
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------- 222
MLNLKSVL+AHRCLNKD++IGQRMITISTVGVPNTIKKLAS+KLQSTLA+
Sbjct: 230 MLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLR 289
Query: 223 ------------------------------------SAGVNDQVEHAVELAELLHEWGRG 246
AGVNDQVEHAVELAELL EWG+
Sbjct: 290 EKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKT 349
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+HVNLIP+NPIEGS+YQRPYKKAVLAFA ALES KIT S+RQTRGLDASAACGQLRN+FQ
Sbjct: 350 YHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNKFQ 409
Query: 307 KSPLRIDSSNSSSESD 322
KSPL ++ + S+ D
Sbjct: 410 KSPLLTETDSQESQPD 425
>gi|218189834|gb|EEC72261.1| hypothetical protein OsI_05406 [Oryza sativa Indica Group]
Length = 395
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/311 (66%), Positives = 235/311 (75%), Gaps = 46/311 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VP+ FR L AGW VGR P+ VTA+DGT K+L+KLEDNRLIETVGIPV+D+KGP RL
Sbjct: 79 VPKVFREALVGAGWKVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDKGPSRL 138
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPLRCSFCATGKGGF+RNL +HEIV QVLAIEE F+HRVTNVVFMGMGEPM
Sbjct: 139 TACVSSQVGCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEETFQHRVTNVVFMGMGEPM 198
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLKSVLEAHRCLNK+++IGQRMITISTVGVPNTIKKLAS+KLQSTLA+
Sbjct: 199 LNLKSVLEAHRCLNKELKIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRE 258
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AG+ND EHA ELAELLH G G+
Sbjct: 259 TIVPSAKSYPLEALMDDCKNYFLETGRRVSFEYTLLAGINDAKEHAEELAELLHTCGGGY 318
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIP+NPI+GS+Y+RPY+K V AF ALE+ KIT S+RQTRGLDA+AACGQLRNEFQK
Sbjct: 319 HVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDANAACGQLRNEFQK 378
Query: 308 SPLRIDSSNSS 318
+PL ++SS SS
Sbjct: 379 NPL-LESSPSS 388
>gi|297598414|ref|NP_001045547.2| Os01g0973400 [Oryza sativa Japonica Group]
gi|57899226|dbj|BAD87375.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
Group]
gi|57899699|dbj|BAD87419.1| radical SAM domain-containing protein-like [Oryza sativa Japonica
Group]
gi|215697144|dbj|BAG91138.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708729|dbj|BAG93998.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740846|dbj|BAG97002.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765571|dbj|BAG87268.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674123|dbj|BAF07461.2| Os01g0973400 [Oryza sativa Japonica Group]
Length = 397
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/311 (66%), Positives = 235/311 (75%), Gaps = 46/311 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VP+ FR L AGW VGR P+ VTA+DGT K+L+KLEDNRLIETVGIPV+D+KGP RL
Sbjct: 81 VPKVFREALVGAGWKVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDKGPSRL 140
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPLRCSFCATGKGGF+RNL +HEIV QVLAIEE F+HRVTNVVFMGMGEPM
Sbjct: 141 TACVSSQVGCPLRCSFCATGKGGFARNLHAHEIVEQVLAIEETFQHRVTNVVFMGMGEPM 200
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLKSVLEAHRCLNK+++IGQRMITISTVGVP+TIKKLAS+KLQSTLA+
Sbjct: 201 LNLKSVLEAHRCLNKELKIGQRMITISTVGVPSTIKKLASHKLQSTLAVSLHAPNQKLRE 260
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AG+ND EHA ELAELLH G G+
Sbjct: 261 TIVPSAKSYPLEALMDDCKNYFLETGRRVSFEYTLLAGINDAKEHAEELAELLHTCGGGY 320
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIP+NPI+GS+Y+RPY+K V AF ALE+ KIT S+RQTRGLDA+AACGQLRNEFQK
Sbjct: 321 HVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVRQTRGLDANAACGQLRNEFQK 380
Query: 308 SPLRIDSSNSS 318
+PL ++SS SS
Sbjct: 381 NPL-LESSPSS 390
>gi|413951197|gb|AFW83846.1| hypothetical protein ZEAMMB73_874612 [Zea mays]
Length = 412
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/319 (63%), Positives = 235/319 (73%), Gaps = 47/319 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE-KGPMR 111
VP++FR L AGW+VGR P+ VTA+DGT K+L+KLEDNRLIETVGIPV+D+ KG R
Sbjct: 93 VPKAFREALLGAGWSVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDNKGSSR 152
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
LTACVSSQVGCPLRCSFCATGKGGF+RNL HEIV QVLAIEE FKHRVTNVVFMGMGEP
Sbjct: 153 LTACVSSQVGCPLRCSFCATGKGGFARNLQPHEIVEQVLAIEETFKHRVTNVVFMGMGEP 212
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------- 222
M+NLKSVLEAH+C NK+++IGQRM+TISTVGVPNTIK LAS+KLQSTLA+
Sbjct: 213 MMNLKSVLEAHQCFNKELKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSLHAPNQKLR 272
Query: 223 ------------------------------------SAGVNDQVEHAVELAELLHEWGRG 246
AG+ND+ EHA ELAELL G G
Sbjct: 273 ETIVPSAKSYPLGALMDDCKSYFLETGRRVSFEYTLLAGINDEKEHAEELAELLRMCGGG 332
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+HVNLIP+NPIEGS+Y+RPY+K V AF ALE+ KIT S+R+TRGLDA+AACGQLRNEFQ
Sbjct: 333 YHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAACGQLRNEFQ 392
Query: 307 KSP-LRIDSSNSSSESDIA 324
K+P L I+ S S+ + +A
Sbjct: 393 KNPLLEIEPSPSTERTLVA 411
>gi|212723564|ref|NP_001132113.1| uncharacterized protein LOC100193530 [Zea mays]
gi|195654259|gb|ACG46597.1| hypothetical protein [Zea mays]
Length = 410
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/319 (63%), Positives = 235/319 (73%), Gaps = 47/319 (14%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE-KGPMR 111
VP++FR L AGW+VGR P+ VTA+DGT K+L+KLEDNRLIETVGIPV+D+ KG R
Sbjct: 91 VPKAFREALLGAGWSVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDNKGSSR 150
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
LTACVSSQVGCPLRCSFCATGKGGF+RNL HEIV QVLAIEE FKHRVTNVVFMGMGEP
Sbjct: 151 LTACVSSQVGCPLRCSFCATGKGGFARNLQPHEIVEQVLAIEETFKHRVTNVVFMGMGEP 210
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------- 222
M+NLKSVLEAH+C NK+++IGQRM+TISTVGVPNTIK LAS+KLQSTLA+
Sbjct: 211 MMNLKSVLEAHQCFNKELKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSLHAPNQKLR 270
Query: 223 ------------------------------------SAGVNDQVEHAVELAELLHEWGRG 246
AG+ND+ EHA ELAELL G G
Sbjct: 271 ETIVPSAKSYPLGALMDDCKSYFLETGRRVSFEYTLLAGINDEKEHAEELAELLRMCGGG 330
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+HVNLIP+NPIEGS+Y+RPY+K V AF ALE+ KIT S+R+TRGLDA+AACGQLRNEFQ
Sbjct: 331 YHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAACGQLRNEFQ 390
Query: 307 KSP-LRIDSSNSSSESDIA 324
K+P L I+ S S+ + +A
Sbjct: 391 KNPLLEIEPSPSTERTLVA 409
>gi|357126962|ref|XP_003565156.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Brachypodium distachyon]
Length = 409
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/311 (64%), Positives = 229/311 (73%), Gaps = 47/311 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VP+ FR L AGW VGR P+ VTA DGT K+L+KLEDNRL+ETVGIPV+D KG RL
Sbjct: 82 VPKVFREALVGAGWRVGRSPVHHAVTATDGTTKILLKLEDNRLVETVGIPVDD-KGSSRL 140
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCPLRCSFCATGKGGF+RNL HEIV QVLAIEE FKHRVTNVVFMGMGEPM
Sbjct: 141 TACVSSQVGCPLRCSFCATGKGGFARNLHGHEIVEQVLAIEESFKHRVTNVVFMGMGEPM 200
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNLK+VLEAHRCLNK+++IGQRM+TISTVGVPNTI KLA++KLQSTLA+
Sbjct: 201 LNLKAVLEAHRCLNKELKIGQRMMTISTVGVPNTINKLATHKLQSTLAVSLHAPNQKLRE 260
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AG+ND+ HA ELA LLH G G+
Sbjct: 261 TIVPSAKAYPLEALMDDCKNYFLETGRRVSFEYTLLAGINDEKAHAEELAALLHACGGGY 320
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIP+NP+EGS+Y+RPY+KA+ AF ALES KIT S+RQTRGLDA+AACGQLRNEFQK
Sbjct: 321 HVNLIPYNPVEGSEYKRPYRKAIQAFVDALESRKITVSVRQTRGLDANAACGQLRNEFQK 380
Query: 308 SPLRIDSSNSS 318
+PL ++SS S
Sbjct: 381 NPL-LESSPPS 390
>gi|168059243|ref|XP_001781613.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666927|gb|EDQ53569.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 390
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 183/326 (56%), Positives = 228/326 (69%), Gaps = 50/326 (15%)
Query: 45 KTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE 104
KT + +P+ RN + EAGW++GR PI T+ DGTVK+L+KLEDNRL+E VGIPV+
Sbjct: 70 KTVKELAQLPKQLRNAMTEAGWSIGRSPIHHVSTSKDGTVKILLKLEDNRLVEAVGIPVK 129
Query: 105 DEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVV 164
D++G RLT CVSSQVGC LRC+FCATGKGGF+RNL +HEIV QVL+IE++F+ RVTN+V
Sbjct: 130 DKEGNQRLTVCVSSQVGCALRCAFCATGKGGFARNLKAHEIVDQVLSIEDLFRQRVTNIV 189
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI--- 221
FMGMGEP++NL +VL+AHR +NK++QIGQRM+TISTVGVPNTI++LA++KLQSTLAI
Sbjct: 190 FMGMGEPLMNLDNVLDAHRTINKELQIGQRMMTISTVGVPNTIRRLATHKLQSTLAISLH 249
Query: 222 ------RS------------------------------------AGVNDQVEHAVELAEL 239
RS AGVNDQ EHA ELA L
Sbjct: 250 APNQELRSRIVPSAKGYPLDALMEDCKYYFETTGRRLSFEYTLLAGVNDQREHAEELATL 309
Query: 240 LHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
LH+W G HVN+IP+NPI S+++RP K VLAF L ++T S+R TRGLDA+AACG
Sbjct: 310 LHQWNLGRHVNIIPYNPIADSEFERPTKAKVLAFVETLSKRRVTASVRVTRGLDANAACG 369
Query: 300 QLRNEFQKSPLRIDSSNSSSESDIAV 325
QLRNEFQK PL+ +S ES I V
Sbjct: 370 QLRNEFQKIPLQ-----ASVESPIPV 390
>gi|302766119|ref|XP_002966480.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
gi|300165900|gb|EFJ32507.1| hypothetical protein SELMODRAFT_85220 [Selaginella moellendorffii]
Length = 425
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/307 (55%), Positives = 208/307 (67%), Gaps = 47/307 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + FR L GW VGR PI V + DGT+K+L+KL+D+RLIETVGIP ++E RL
Sbjct: 116 LSKGFREKLISEGWEVGRSPIHHKVNSVDGTIKVLLKLKDSRLIETVGIPADEENN--RL 173
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T CVSSQVGCPLRC+FCATGKGGF+R+L HEI+ QVL +EEIFK RV+NVVFMGMGEPM
Sbjct: 174 TVCVSSQVGCPLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQRVSNVVFMGMGEPM 233
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LN+ SVL AHRCLN+D+ IGQRMITISTVGVPN+I+KLA++KLQSTLA+
Sbjct: 234 LNMASVLAAHRCLNEDIGIGQRMITISTVGVPNSIRKLAAHKLQSTLAVSLHAPNQRLRE 293
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AGVND E A EL ELLH W H
Sbjct: 294 QIVPSAKSYPLDALMEDCKEYFSITGRRVSFEYTLLAGVNDSKELAFELGELLHHWDMSH 353
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIP+NP+ S +QRP++K+V F L ++ S+RQTRGLDA+AACGQLRN+FQK
Sbjct: 354 HVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAACGQLRNQFQK 413
Query: 308 SPLRIDS 314
+PL +S
Sbjct: 414 TPLEDES 420
>gi|302800564|ref|XP_002982039.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
gi|300150055|gb|EFJ16707.1| hypothetical protein SELMODRAFT_179299 [Selaginella moellendorffii]
Length = 425
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/307 (55%), Positives = 208/307 (67%), Gaps = 47/307 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + FR L GW VGR PI V + DGT+K+L+KL+D+RLIETVGIP ++E RL
Sbjct: 116 LSKGFREKLISEGWEVGRSPIHHKVNSVDGTIKVLLKLKDSRLIETVGIPADEENN--RL 173
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T CVSSQVGCPLRC+FCATGKGGF+R+L HEI+ QVL +EEIFK RV+NVVFMGMGEPM
Sbjct: 174 TVCVSSQVGCPLRCAFCATGKGGFTRSLKPHEIIEQVLVMEEIFKQRVSNVVFMGMGEPM 233
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LN+ SVL AHRCLN+D+ IGQRMITISTVGVPN+I+KLA++KLQSTLA+
Sbjct: 234 LNMASVLAAHRCLNEDIGIGQRMITISTVGVPNSIRKLAAHKLQSTLAVSLHAPNQRLRE 293
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AGVND E A EL ELLH W H
Sbjct: 294 QIVPSAKSYPLDALMEDCKEYFSITGRRVSFEYTLLAGVNDSKELAFELGELLHHWDMSH 353
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVNLIP+NP+ S +QRP++K+V F L ++ S+RQTRGLDA+AACGQLRN+FQK
Sbjct: 354 HVNLIPYNPVADSLFQRPWQKSVQTFVETLAKCRVNASVRQTRGLDANAACGQLRNQFQK 413
Query: 308 SPLRIDS 314
+PL +S
Sbjct: 414 TPLEDES 420
>gi|413951198|gb|AFW83847.1| hypothetical protein ZEAMMB73_874612 [Zea mays]
Length = 399
Score = 326 bits (836), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 181/321 (56%), Positives = 214/321 (66%), Gaps = 64/321 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE-KGPMR 111
VP++FR L AGW+VGR P+ VTA+DGT K+L+KLEDNRLIETVGIPV+D+ KG R
Sbjct: 93 VPKAFREALLGAGWSVGRSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDNKGSSR 152
Query: 112 LTACVSSQVGC--PLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG 169
LTACVSSQV PL L I VLAIEE FKHRVTNVVFMGMG
Sbjct: 153 LTACVSSQVLSVDPL---------------LLGTVIQTVVLAIEETFKHRVTNVVFMGMG 197
Query: 170 EPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------- 222
EPM+NLKSVLEAH+C NK+++IGQRM+TISTVGVPNTIK LAS+KLQSTLA+
Sbjct: 198 EPMMNLKSVLEAHQCFNKELKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSLHAPNQK 257
Query: 223 --------------------------------------SAGVNDQVEHAVELAELLHEWG 244
AG+ND+ EHA ELAELL G
Sbjct: 258 LRETIVPSAKSYPLGALMDDCKSYFLETGRRVSFEYTLLAGINDEKEHAEELAELLRMCG 317
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
G+HVNLIP+NPIEGS+Y+RPY+K V AF ALE+ KIT S+R+TRGLDA+AACGQLRNE
Sbjct: 318 GGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAACGQLRNE 377
Query: 305 FQKSP-LRIDSSNSSSESDIA 324
FQK+P L I+ S S+ + +A
Sbjct: 378 FQKNPLLEIEPSPSTERTLVA 398
>gi|414878419|tpg|DAA55550.1| TPA: hypothetical protein ZEAMMB73_377798 [Zea mays]
Length = 277
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/235 (64%), Positives = 179/235 (76%), Gaps = 17/235 (7%)
Query: 109 PMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM 168
P+ L + + VGCPLRCSFCATGKGGF+RNL HEIV QVLAIEE FK+RVTNVVF+GM
Sbjct: 43 PLLLGTVIQTVVGCPLRCSFCATGKGGFARNLQPHEIVEQVLAIEETFKYRVTNVVFIGM 102
Query: 169 GEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRS----- 223
GEPM+NLKSVLEAH+C NK+++IGQRM+TISTV VPNTIK LAS+KLQSTLA+R
Sbjct: 103 GEPMMNLKSVLEAHQCFNKELKIGQRMMTISTVSVPNTIKMLASHKLQSTLAVRRKYYSA 162
Query: 224 ------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
AG+ND+ EHA ELAELL G G+HVNLIP+NPIEGS+Y+RPY+K V
Sbjct: 163 TLLTWLEWISWPAGINDEKEHAEELAELLRMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQ 222
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESDIAVA 326
AF ALE+ KIT S+R+TRGLDA+ ACGQLRN FQK+PL + S E + A
Sbjct: 223 AFVDALEARKITVSVRRTRGLDANVACGQLRNAFQKNPLLEIEPSPSIERTLVTA 277
>gi|145340644|ref|XP_001415431.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575654|gb|ABO93723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 340
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 153/301 (50%), Positives = 190/301 (63%), Gaps = 46/301 (15%)
Query: 55 QSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTA 114
+ R +L+ A VGR A+DGT KLL++L+D+R++ETVGIP E G RLTA
Sbjct: 32 KKLREELKSANVRVGRSRRHHVAAASDGTAKLLLRLDDDRVVETVGIPAT-ENGKNRLTA 90
Query: 115 CVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN 174
CVSSQVGCP+RC+FCATGKGGF+RNL+ HEIV QVLA+EE F RV+NVVFMGMGEP+LN
Sbjct: 91 CVSSQVGCPMRCTFCATGKGGFARNLAPHEIVDQVLALEEYFGQRVSNVVFMGMGEPLLN 150
Query: 175 LKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------ 222
+ +VL+AH LNK++ IG R ITISTVGV +I+KLA +LQS LA+
Sbjct: 151 VPNVLKAHEALNKEIGIGARHITISTVGVRGSIEKLAHAQLQSVLAVSLHAPNQELRETI 210
Query: 223 ---------------------------------SAGVNDQVEHAVELAELLHEWGRGHHV 249
G+NDQ EHA EL LL+ HV
Sbjct: 211 IPSAKVYPMEDLLQDCEQYFVATGRRVTFEYTLLGGINDQPEHAKELGRLLYARNLASHV 270
Query: 250 NLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
NLIP+NP++ SDYQRP + V AF LE + SIRQTRGL+A+AACGQLRN FQK+
Sbjct: 271 NLIPYNPVDDSDYQRPSRATVYAFRDILEGLNVPASIRQTRGLEAAAACGQLRNAFQKNA 330
Query: 310 L 310
+
Sbjct: 331 I 331
>gi|307104499|gb|EFN52752.1| hypothetical protein CHLNCDRAFT_36696 [Chlorella variabilis]
Length = 336
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/301 (50%), Positives = 186/301 (61%), Gaps = 46/301 (15%)
Query: 55 QSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTA 114
+ R L E G GR + +V + DGT K L++L D R++E VGIP D RLT
Sbjct: 30 KDLRAQLAERGVRTGRSVLHHSVASPDGTRKFLLQLADGRVVEAVGIPA-DGGDRRRLTV 88
Query: 115 CVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN 174
CVSSQVGCP+RC+FCATGKGGF+RNL HEIV QVL ++E F RV+N+VFMGMGEP+LN
Sbjct: 89 CVSSQVGCPMRCTFCATGKGGFARNLLPHEIVDQVLTVQEEFGQRVSNIVFMGMGEPLLN 148
Query: 175 LKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRS----------- 223
L SVL AH LNKDV +G R ITISTVGVPN I+++A +LQSTLA+
Sbjct: 149 LPSVLRAHEILNKDVGVGARHITISTVGVPNAIRRMARLQLQSTLAVSIHAPSQALRETI 208
Query: 224 ----------------------------------AGVNDQVEHAVELAELLHEWGRGHHV 249
AGVND V A ELA LL HV
Sbjct: 209 VPSARAYPLDALMADCQEYFRLSGRRVTFEYTLLAGVNDGVGQAEELAALLRRHDLRSHV 268
Query: 250 NLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
NLIP+NP++ S++QRP ++AV AFA ALE I S+R TRGL+A+AACGQLRN+ QK+P
Sbjct: 269 NLIPWNPVDDSEFQRPTRRAVQAFAAALEQRGIPVSVRHTRGLEAAAACGQLRNQHQKTP 328
Query: 310 L 310
L
Sbjct: 329 L 329
>gi|412993776|emb|CCO14287.1| ribosomal RNA large subunit methyltransferase N [Bathycoccus
prasinos]
Length = 453
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/304 (49%), Positives = 194/304 (63%), Gaps = 47/304 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ R G T+GR ++ +A DGT KLL+KL+DNR++ETVGIP +E G RL
Sbjct: 149 LPKDLRESWDGLGVTIGRNEVYAKKSAPDGTTKLLMKLDDNRIVETVGIP-SNEYGKSRL 207
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-KHRVTNVVFMGMGEP 171
T CVSSQVGCP+RC FCATGKGGF RNL++ EIV QV+AIEE F RV+NVVFMGMGEP
Sbjct: 208 TCCVSSQVGCPMRCEFCATGKGGFYRNLTAREIVDQVMAIEEEFGGRRVSNVVFMGMGEP 267
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------- 222
MLN+ +V++A LNK++ IG R I+ISTVGV ++KLASY++Q LA+
Sbjct: 268 MLNVPNVVKATELLNKEIGIGMRHISISTVGVFGALEKLASYEMQCVLAVSLHAPNQKIR 327
Query: 223 ------------------------------------SAGVNDQVEHAVELAELLHEWGRG 246
AGVNDQ EHA ELA++L +
Sbjct: 328 EEIIPSARAYSFDDILNDCVAYFNATGRRVTFEYTLLAGVNDQKEHAKELAQVLFKKNLA 387
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
HVNLIP+NP++ SD++RP K+A+ F LE + + TS+RQTRGL+A+AACGQLRN +Q
Sbjct: 388 SHVNLIPYNPVDDSDFKRPTKQAIDQFRRILEENNVPTSVRQTRGLEAAAACGQLRNMYQ 447
Query: 307 KSPL 310
K L
Sbjct: 448 KEAL 451
>gi|255085148|ref|XP_002505005.1| predicted protein [Micromonas sp. RCC299]
gi|226520274|gb|ACO66263.1| predicted protein [Micromonas sp. RCC299]
Length = 375
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/309 (47%), Positives = 198/309 (64%), Gaps = 47/309 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L +AG +VGR + + DGT KLL++L D+R++ETVGIP E G RL
Sbjct: 68 LPKAARRQLLDAGVSVGRSVVHHVAGSPDGTTKLLLRLHDDRVVETVGIPAH-EAGHRRL 126
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCP+RC+FCATGKGGF+RNL++HEIV QV+++EE F RVT++VFMGMGEP+
Sbjct: 127 TACVSSQVGCPMRCTFCATGKGGFARNLATHEIVDQVVSLEEHFGERVTHIVFMGMGEPL 186
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LN+ +VL AH LNK+V IG R ITISTVGV I++LA KLQSTLAI
Sbjct: 187 LNVPNVLRAHEALNKEVGIGSRHITISTVGVRGAIERLARAKLQSTLAISLHAPNQELRE 246
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AGVND ++ A EL LL++
Sbjct: 247 RLIPSAKAYPMQELLNDAQQYFIATGRRVTFEYTLLAGVNDSIQQAEELGRLLYKNKLAS 306
Query: 248 HVNLIPFNPIEGS-DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
HVN+IP+NP++ + D++RP + ++L F LE + SIRQ+RGL+A+AACGQLRN +Q
Sbjct: 307 HVNIIPYNPVDDAPDFKRPGRASILNFRNTLEQMNVPASIRQSRGLEAAAACGQLRNAYQ 366
Query: 307 KSPLRIDSS 315
K+ L+ + +
Sbjct: 367 KNALQAEEA 375
>gi|159462948|ref|XP_001689704.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283692|gb|EDP09442.1| predicted protein [Chlamydomonas reinhardtii]
Length = 358
Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 190/303 (62%), Gaps = 50/303 (16%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ +R L G GR + +V ADGT K L++L D R++ETVGIP ED RL
Sbjct: 54 IPKEWRAQLLADGVRTGRSLLHHSVGDADGTRKFLLQLGDGRIVETVGIPTED-----RL 108
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T CVSSQVGCP+RC+FCATGKGGF+RNL+ HEI+ QVL ++E++ RV+NVVFMGMGEP+
Sbjct: 109 TVCVSSQVGCPMRCTFCATGKGGFARNLAPHEIMDQVLTVQELYGRRVSNVVFMGMGEPL 168
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNL SV A+ LNK + IG ITISTVGVPN I++LA L++TLA+
Sbjct: 169 LNLPSVTRAYHGLNKQIGIGGAFITISTVGVPNAIRRLAGADLKATLAVSLHAPNQALRE 228
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
+GVND+V HA EL LL +
Sbjct: 229 SIIPSAKAYPIEALLEDCAAYFKRTGRRVTFEYTLLSGVNDEVAHAQELVALLQRYNLMS 288
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVN+IP+NP++ S++QRP + V AF A+E+ + ++R+TRGL+A+AACGQLRN+FQK
Sbjct: 289 HVNVIPWNPVDESEFQRPSRNRVFAFTRAVEAAGLPCTVRETRGLEAAAACGQLRNQFQK 348
Query: 308 SPL 310
+PL
Sbjct: 349 TPL 351
>gi|303273710|ref|XP_003056208.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462292|gb|EEH59584.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 358
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 147/301 (48%), Positives = 188/301 (62%), Gaps = 47/301 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L A +GR + V +DG VKLL++L D+++IETVGIP E+G RL
Sbjct: 52 LPKATRAALLAADVHIGRSSVHHVVVDSDGVVKLLLRLGDDKVIETVGIP-SLERGKDRL 110
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVSSQVGCP+RC+FCATGKGGF+RNL+ HEIV QVL++EE F RVTNVVFMGMGEP+
Sbjct: 111 TACVSSQVGCPMRCTFCATGKGGFTRNLAPHEIVDQVLSLEEHFGKRVTNVVFMGMGEPL 170
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LN +VL A+ LN ++ IG R ITISTVGV +++ LA +LQSTLA+
Sbjct: 171 LNTPNVLRAYTALNTEIGIGARHITISTVGVRGSLQMLAGARLQSTLAVSLHAPNQSLRE 230
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
AG+ND E AVELAELLH+
Sbjct: 231 VLIPSAKSYPLGELLNDCEQYFIATGRRVTFEYTLLAGINDSSEQAVELAELLHKKKLAS 290
Query: 248 HVNLIPFNPI-EGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
HVNLIP+NP+ + D+ RP + V F LE ++ SIRQ+RGL+A+AACGQLR+ FQ
Sbjct: 291 HVNLIPYNPVHDAPDFARPDRATVFKFKNILEEMQVPASIRQSRGLEAAAACGQLRSSFQ 350
Query: 307 K 307
K
Sbjct: 351 K 351
>gi|409992548|ref|ZP_11275731.1| radical SAM protein [Arthrospira platensis str. Paraca]
gi|291570690|dbj|BAI92962.1| ribosomal RNA large subunit methyltransferase N [Arthrospira
platensis NIES-39]
gi|409936586|gb|EKN78067.1| radical SAM protein [Arthrospira platensis str. Paraca]
Length = 344
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/318 (46%), Positives = 186/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA K+ P+ +R+ L A VGR I A+DGT+K L+K
Sbjct: 32 RGKQLYQWIYQKGA-KSLEEITVFPKQWRSQL--ATIPVGRSTIHYRAVASDGTIKYLLK 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP D RLT CVSSQVGCP+ C FCATGKGGF RNL +HEIV QV
Sbjct: 89 LSDGQIIETVGIPTHD-----RLTVCVSSQVGCPMACDFCATGKGGFFRNLETHEIVDQV 143
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+++VFMGMGEP+LN ++ + A CLN+D+ IGQRMIT+STVG+PN I++
Sbjct: 144 LTVQEDFQRRVSHIVFMGMGEPLLNTQNAIAAITCLNRDIGIGQRMITLSTVGIPNRIRQ 203
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA Y+LQ TLA+ A
Sbjct: 204 LAEYQLQITLAVSLHASNQTLREQLIPSAKTYPLEALISECRDYVKLTGRRVSFEYVMLA 263
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND HA ELA L+ G HVNLIP+NPI DYQRP + F LE ++
Sbjct: 264 GVNDLPTHAAELASLMR--GFQSHVNLIPYNPINEVDYQRPSPSQIQGFVKELEERRVAV 321
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGLDA AACGQLR
Sbjct: 322 SVRYSRGLDADAACGQLR 339
>gi|376003036|ref|ZP_09780855.1| Radical SAM enzyme, Cfr family ;Fe-S cluster domain [Arthrospira
sp. PCC 8005]
gi|423067219|ref|ZP_17056009.1| radical SAM enzyme Cfr family [Arthrospira platensis C1]
gi|375328638|emb|CCE16608.1| Radical SAM enzyme, Cfr family ;Fe-S cluster domain [Arthrospira
sp. PCC 8005]
gi|406711505|gb|EKD06706.1| radical SAM enzyme Cfr family [Arthrospira platensis C1]
Length = 346
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 186/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA K+ P+ +R+ L A VGR I A+DGT+K L+K
Sbjct: 32 RGKQLYQWIYQKGA-KSLEEITVFPKQWRSQL--ATIPVGRSTIHYRAVASDGTIKYLLK 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP D RLT CVSSQVGCP+ C FCATGKGGF RNL +HEIV QV
Sbjct: 89 LSDGQIIETVGIPTHD-----RLTVCVSSQVGCPMACDFCATGKGGFFRNLETHEIVDQV 143
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+++VFMGMGEP+LN ++ + A CLN+D+ IGQRMIT+STVG+PN I++
Sbjct: 144 LTVQEDFQRRVSHIVFMGMGEPLLNTQNAIAAITCLNRDIGIGQRMITLSTVGIPNRIRQ 203
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA Y+LQ TLA+ +
Sbjct: 204 LAEYQLQITLAVSLHASNQTLREQLIPSAKTYPLESLISECRDYVKLTGRRVSFEYVMLS 263
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND HA ELA L+ G HVNLIP+NPI DYQRP + F LE ++
Sbjct: 264 GVNDLPSHATELASLMR--GFQSHVNLIPYNPINEVDYQRPSPSQIQDFVKELEQRRVAV 321
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGLDA AACGQLR
Sbjct: 322 SVRYSRGLDADAACGQLR 339
>gi|209526448|ref|ZP_03274975.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
gi|209493083|gb|EDZ93411.1| radical SAM enzyme, Cfr family [Arthrospira maxima CS-328]
Length = 346
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 147/318 (46%), Positives = 186/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA K+ P+ +R+ L A VGR I A+DGT+K L+K
Sbjct: 32 RGKQLYQWIYQKGA-KSLEEITVFPKQWRSQL--ATIPVGRSTIHYRAVASDGTIKYLLK 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP D RLT CVSSQVGCP+ C FCATGKGGF RNL +HEIV QV
Sbjct: 89 LSDGQIIETVGIPTHD-----RLTVCVSSQVGCPMACDFCATGKGGFFRNLETHEIVDQV 143
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+++VFMGMGEP+LN ++ + A CLN+D+ IGQRMIT+STVG+PN I++
Sbjct: 144 LTVQEDFQRRVSHIVFMGMGEPLLNTQNAIAAITCLNRDIGIGQRMITLSTVGIPNRIRQ 203
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA Y+LQ TLA+ +
Sbjct: 204 LAEYQLQITLAVSLHASNQTLREQLIPSAKTYPLESLISECRDYVKLTGRRVSFEYVMLS 263
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND HA ELA L+ G HVNLIP+NPI DYQRP + F LE ++
Sbjct: 264 GVNDLPSHATELASLMR--GFQSHVNLIPYNPINEVDYQRPSPSQIQDFFKELEQRRVAV 321
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGLDA AACGQLR
Sbjct: 322 SVRYSRGLDADAACGQLR 339
>gi|302844849|ref|XP_002953964.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
nagariensis]
gi|300260776|gb|EFJ44993.1| hypothetical protein VOLCADRAFT_121224 [Volvox carteri f.
nagariensis]
Length = 438
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 187/303 (61%), Gaps = 50/303 (16%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+S+R L G GR + +V DGT K L++L D R++ETVGIP ED RL
Sbjct: 134 IPKSWRAQLLADGVRSGRSRLHHSVGDEDGTRKFLLQLHDGRIVETVGIPTED-----RL 188
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T CVSSQVGCP+RC+FCATGKGGF+RNL+ HEI+ QVL ++E RV+NVVFMGMGEP+
Sbjct: 189 TVCVSSQVGCPMRCTFCATGKGGFARNLAPHEILDQVLTVQEQLGRRVSNVVFMGMGEPL 248
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
LNL +V+ A++ LN+ V IG ITISTVGVPN I +LA+ L++TLA+
Sbjct: 249 LNLPAVVRAYQGLNQQVGIGGAFITISTVGVPNAIPRLAASSLKATLAVSLHAPNQALRE 308
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLHEWGRGH 247
+GVND++EHA EL LL
Sbjct: 309 RLIPSAKAYPLEALIQDCVTYYRITGRRVTFEYTLLSGVNDELEHARELTALLRRHDLMS 368
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
HVN+IP+NP++ S++ RP + V AF A+E+ + ++R+TRGL+A+AACGQLRN FQK
Sbjct: 369 HVNIIPWNPVDESEFVRPSRNRVFAFRRAVEAAGLACTVRETRGLEAAAACGQLRNRFQK 428
Query: 308 SPL 310
PL
Sbjct: 429 QPL 431
>gi|428779479|ref|YP_007171265.1| 2-vinyl bacteriochlorophyllide hydratase [Dactylococcopsis salina
PCC 8305]
gi|428693758|gb|AFZ49908.1| 23S rRNA m2A2503 methyltransferase [Dactylococcopsis salina PCC
8305]
Length = 339
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/324 (48%), Positives = 189/324 (58%), Gaps = 59/324 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPV--PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
RG+Q W + GA R P P+S+R LQ+ +GR I A D T K L
Sbjct: 28 RGKQLHQWLYQKGA---RSMPEITVFPKSWRETLQDQ--PIGRSTIAHRSIAPDETRKYL 82
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++LED LIETVGIP RLT CVSSQVGCP+ C FCATGKGGF+RNL++HEIV
Sbjct: 83 LRLEDGELIETVGIPTAK-----RLTVCVSSQVGCPMNCDFCATGKGGFTRNLNTHEIVD 137
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL + E F+ RV++VVFMGMGEP+LNLK V+ A + LN+D+ IGQR +T+STVG+P I
Sbjct: 138 QVLTVAEDFQARVSHVVFMGMGEPLLNLKPVVNAVKSLNQDIGIGQRCLTVSTVGIPKQI 197
Query: 208 KKLASYKLQSTLAIR--------------------------------------------- 222
KLA+ KLQ TLAI
Sbjct: 198 PKLAAAKLQITLAISLHASNQTLREKLIPSGGGYPLSQLISDCRNYVQQTGRRVSFEYIL 257
Query: 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282
AGVND EHAVELA+LL G HVNLIP+NPI DYQRP K+ + F ALE I
Sbjct: 258 LAGVNDTPEHAVELAQLLR--GFQAHVNLIPYNPISEVDYQRPSKERINNFQSALEDANI 315
Query: 283 TTSIRQTRGLDASAACGQLRNEFQ 306
SIR +RGL+A AACGQLR + Q
Sbjct: 316 AVSIRYSRGLEADAACGQLRAQNQ 339
>gi|158337109|ref|YP_001518284.1| radical SAM protein [Acaryochloris marina MBIC11017]
gi|205829656|sp|B0C9F4.1|RLMN_ACAM1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|158307350|gb|ABW28967.1| radical SAM enzyme, Cfr family [Acaryochloris marina MBIC11017]
Length = 351
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/318 (47%), Positives = 188/318 (59%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G + +P+ +R ++ A VGR I A DGTVK L+K
Sbjct: 34 RGQQVHQWIYQKGV-HSLSDITVLPKQWRTEI--ADIPVGRSQIHHRSAAQDGTVKYLLK 90
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP + RLT CVSSQVGCP+ C FCATGKG + RNL+ HEIV QV
Sbjct: 91 LADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQV 145
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV NVVFMGMGEP+LNL+ VL A R LN+DV IGQR +T+STVG+P I K
Sbjct: 146 LTVQEDFQQRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILK 205
Query: 210 LASYKLQSTLA---------IRS------------------------------------A 224
LA ++LQ TLA IR+ +
Sbjct: 206 LAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGRRVTFEYIVLS 265
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVNDQ EHA+ELA H G HVNLIP+NPI DYQRP +K + F +L+S IT
Sbjct: 266 GVNDQTEHALELAH--HLRGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITA 323
Query: 285 SIRQTRGLDASAACGQLR 302
SIR++RGLD AACGQLR
Sbjct: 324 SIRRSRGLDKDAACGQLR 341
>gi|255077056|ref|XP_002502181.1| predicted protein [Micromonas sp. RCC299]
gi|226517446|gb|ACO63439.1| predicted protein [Micromonas sp. RCC299]
Length = 395
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 183/307 (59%), Gaps = 48/307 (15%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR- 111
+P FR L +AG+ GR V+ DGT K L +L +IE VGIPVE KG R
Sbjct: 86 LPLGFRQALVDAGYETGRREPVEIVSDEDGTRKALFELRCGSIIEAVGIPVERAKGRRRR 145
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
T CVSSQVGC +RCSFCATG+ GF RNL+S EIV QVL++E++F R TNVV MGMGEP
Sbjct: 146 FTVCVSSQVGCAMRCSFCATGRQGFRRNLTSDEIVNQVLSMEDVFGRRATNVVMMGMGEP 205
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------- 222
+LNL+ VL AHRCLN+DV IG R TISTVGVPN + KLA+++LQ+TLA+
Sbjct: 206 LLNLREVLRAHRCLNRDVGIGGRYFTISTVGVPNALSKLAAHRLQATLAVSLHAPTQELR 265
Query: 223 ------------------------------------SAGVNDQVEHAVELAELLH-EWGR 245
AG ND +HA LA+LL + GR
Sbjct: 266 ERLIPSAKAFPLDALLEEVRMYRKATGRRVTFEYTLLAGENDSEDHARALAKLLRSKVGR 325
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK-ITTSIRQTRGLDASAACGQLRNE 304
G H+NL+P+NP+ G+++QRP K AV F L + + ++ S+R TRGL A AACGQL
Sbjct: 326 GCHINLLPWNPVAGANHQRPSKSAVNRFCDVLAAERGVSYSVRATRGLVAQAACGQLTGA 385
Query: 305 FQKSPLR 311
F++ R
Sbjct: 386 FERKSSR 392
>gi|359460600|ref|ZP_09249163.1| radical SAM protein [Acaryochloris sp. CCMEE 5410]
Length = 351
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 150/318 (47%), Positives = 184/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G + +P+ +R ++ A VGR I A DGTVK L+K
Sbjct: 34 RGQQVHQWIYQKGV-HSLSDITVLPKQWRTEI--ADIPVGRSQIHHRSAAQDGTVKYLLK 90
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP + RLT CVSSQVGCP+ C FCATGKG + RNL+ HEIV QV
Sbjct: 91 LADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQV 145
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV NVVFMGMGEP+LNL VL A R LN+DV IGQR +T+STVG+P I K
Sbjct: 146 LTVQEDFQQRVGNVVFMGMGEPLLNLDQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILK 205
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ TLA I +
Sbjct: 206 LAQHQLQITLAVSLHASNQNIRTQLVPSAKHYPLEQLLKDCRTYVTQTGRRVTFEYIMLS 265
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA+ELA H G HVNLIP+NPI DYQRP +K + F +L+S IT
Sbjct: 266 GVNDHPEHALELAH--HLRGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITA 323
Query: 285 SIRQTRGLDASAACGQLR 302
SIR++RGLD AACGQLR
Sbjct: 324 SIRRSRGLDKDAACGQLR 341
>gi|427417310|ref|ZP_18907493.1| 23S rRNA m(2)A-2503 methyltransferase [Leptolyngbya sp. PCC 7375]
gi|425760023|gb|EKV00876.1| 23S rRNA m(2)A-2503 methyltransferase [Leptolyngbya sp. PCC 7375]
Length = 363
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 192/318 (60%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + A ++ P+++R ++ +GR I AAD TVK L++
Sbjct: 50 RGKQLHQW-LYAKGVRSLTGITVFPKAWRQGMENV--FIGRSDIHHRSIAADQTVKFLLR 106
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D ++IETVG+P + RLT CVSSQVGCP+ C FCATGKGGF RNL++HEIV QV
Sbjct: 107 LDDGQIIETVGMPTDK-----RLTVCVSSQVGCPMACDFCATGKGGFIRNLATHEIVDQV 161
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+N+VFMGMGEP++N+++V+ A +CLN+D+ IGQR ITISTVG+P I++
Sbjct: 162 LTVQEAFDQRVSNIVFMGMGEPLINVQNVVGAVKCLNQDIGIGQRSITISTVGIPGQIRR 221
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA Y+LQ+TLA I A
Sbjct: 222 LAQYRLQTTLAVSLHGSNQALRTQLIPSAQHYPLTDLLDECREYIAMTGRRVTFEYILLA 281
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
G+ND EHA EL++LL G HVNLIP+NPI+ DYQRP +K V F +L++ I
Sbjct: 282 GLNDCNEHAAELSQLLR--GFQSHVNLIPYNPIDEVDYQRPSRKRVNQFTDSLKAAGIAV 339
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+ AACGQLR
Sbjct: 340 SVRYSRGLEKDAACGQLR 357
>gi|119488056|ref|ZP_01621500.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
gi|119455345|gb|EAW36484.1| hypothetical protein L8106_11682 [Lyngbya sp. PCC 8106]
Length = 348
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 182/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G SK+ P+ +R + A +++GR I A D TVK L+K
Sbjct: 32 RGKQLYQWIYQKG-SKSLSEITVFPKQWRETV--ANFSIGRSTIHYRSVAPDQTVKYLLK 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L DN +IETVGIP E RLT CVSSQVGCP+ C FCATGKGGF RNL +HEI+ QV
Sbjct: 89 LADNNIIETVGIPTEK-----RLTVCVSSQVGCPMACDFCATGKGGFVRNLETHEIIDQV 143
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+++VFMGMGEP+LN K+V+ A + LN+DV IGQRMIT+STVG+P I+
Sbjct: 144 LTVQEDFGRRVSHIVFMGMGEPLLNTKNVVAAIKSLNQDVGIGQRMITVSTVGIPQQIRD 203
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
A Y+LQ TLA I A
Sbjct: 204 FAGYQLQVTLAVSLHASNQKLREKLIPSADHYPLEKLIADCREYVNTTGRRVSFEYILLA 263
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
ND+ EHA+ELA H G HVNLIP+NPI DYQRP + F AL+ I
Sbjct: 264 NFNDKPEHAIELAT--HLRGFQSHVNLIPYNPISEVDYQRPTSPQINTFMKALKERHIAV 321
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 322 SVRYSRGLEADAACGQLR 339
>gi|428225868|ref|YP_007109965.1| 23S rRNA m(2)A-2503 methyltransferase [Geitlerinema sp. PCC 7407]
gi|427985769|gb|AFY66913.1| 23S rRNA m(2)A-2503 methyltransferase [Geitlerinema sp. PCC 7407]
Length = 354
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/326 (46%), Positives = 185/326 (56%), Gaps = 55/326 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA ++ P+ +R+ L A + +GR I A D TVK L+K
Sbjct: 39 RGKQLYQWLYERGA-RSLEEISVFPKQWRSQL--ADFPIGRSQIHHRAVAPDETVKYLLK 95
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP + RLT CVSSQVGCP+ C FCATGKGGF RNL HEIV QV
Sbjct: 96 LADGQIIETVGIPSD-----RRLTVCVSSQVGCPMACDFCATGKGGFQRNLERHEIVDQV 150
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+N+VFMGMGEP+LN +VL A RCLN+DV IG R IT+STVG+P I++
Sbjct: 151 LTVQEDFQQRVSNIVFMGMGEPLLNTDNVLAAIRCLNEDVGIGARHITVSTVGIPGHIRR 210
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA +LQ TLA I A
Sbjct: 211 LADQQLQITLAVSLHASNQPLRERLIPSAKPYPLADLLEECRTYVQLTGRRVTFEYILLA 270
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
ND EHA ELA L G HVNLIP+NPI DYQRP + V AF AL+ H+I
Sbjct: 271 DFNDLPEHAAELAHSLR--GFQSHVNLIPYNPISEVDYQRPSPQRVQAFLDALKRHRIAA 328
Query: 285 SIRQTRGLDASAACGQLRNEFQKSPL 310
S+R +RGL+A AACGQLR K+ L
Sbjct: 329 SVRYSRGLEADAACGQLRASKLKASL 354
>gi|220905656|ref|YP_002480967.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
gi|219862267|gb|ACL42606.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7425]
Length = 367
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 187/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G ++ P+++R + E VGR + A DGTVK L++
Sbjct: 50 RGQQLHQWLYQKGV-RSLTEISVFPKAWRQQVAEVA--VGRSQLHYRSQAQDGTVKYLLR 106
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D ++IETVGIP RLT CVSSQVGCP+ C FCATGKGGF R+L HEIV QV
Sbjct: 107 LDDGQIIETVGIPSNR-----RLTVCVSSQVGCPMGCDFCATGKGGFRRHLDRHEIVDQV 161
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++ F RV+NVVFMGMGEP+LNL++VLEA RCLN+DV IGQR +TISTVG+P I++
Sbjct: 162 LTVQADFGQRVSNVVFMGMGEPLLNLEAVLEAVRCLNQDVGIGQRFLTISTVGIPGQIRR 221
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA++ LQ+TLA I
Sbjct: 222 LANHHLQATLAVSLHASNQPLRAQLIPSARHYPLENLLQECRDYVQLTGRRVSFEYILLG 281
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
G+ND +HA+ELA+ H G HVNLIP+NPI DYQRP + + F L+ H I
Sbjct: 282 GLNDLPQHALELAQ--HLRGFQSHVNLIPYNPISEVDYQRPSPQRMQHFLQLLQEHHIAA 339
Query: 285 SIRQTRGLDASAACGQLR 302
SIR++RGLD +AACGQLR
Sbjct: 340 SIRRSRGLDQNAACGQLR 357
>gi|303280559|ref|XP_003059572.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459408|gb|EEH56704.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 406
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 180/302 (59%), Gaps = 54/302 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++FR+ L+ +G VGR+ V A DGT K+L+KL +IE VG E R
Sbjct: 99 IPEAFRSSLRASGVHVGRVRPIDVVAAPDGTKKVLLKLRCGSVIEAVG-----ETRRRRF 153
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T CVSSQVGC +RCSFCATG+ GF RNL+S EIV QVLA+E++F R TNVV MGMGEP+
Sbjct: 154 TVCVSSQVGCAMRCSFCATGRQGFKRNLTSDEIVNQVLALEDVFGRRATNVVMMGMGEPL 213
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222
+NLK VL AHRCLN+DV IG R TISTVGVPN + KLA++KLQ+TLA+
Sbjct: 214 MNLKEVLRAHRCLNRDVGIGGRYFTISTVGVPNQLSKLAAHKLQATLAVSLHAPTQELRE 273
Query: 223 -----------------------------------SAGVNDQVEHAVELAELLH-EWGRG 246
AG ND EHA L LL GRG
Sbjct: 274 KLIPSAKAYHVDDLLEDCRLYKKSTGKRLTFEYTLLAGENDSPEHARALGRLLRTRVGRG 333
Query: 247 HHVNLIPFNPIEGSD--YQRPYKKAVLAFAGALESHK-ITTSIRQTRGLDASAACGQLRN 303
HVNL+P+NP+ G++ + RP K AV FA AL + +T ++R+TRGL+A AACGQL
Sbjct: 334 SHVNLLPWNPVTGAEDAHARPSKTAVKRFADALAKERGVTFTVRRTRGLEADAACGQLTG 393
Query: 304 EF 305
F
Sbjct: 394 SF 395
>gi|147867042|emb|CAN80514.1| hypothetical protein VITISV_023658 [Vitis vinifera]
Length = 206
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/206 (64%), Positives = 146/206 (70%), Gaps = 46/206 (22%)
Query: 166 MGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRS-- 223
MGMGEPMLNLKSV+EAHRCLNKDVQIGQRMITIS+VGVPNTIKKLASYKLQSTLAI
Sbjct: 1 MGMGEPMLNLKSVIEAHRCLNKDVQIGQRMITISSVGVPNTIKKLASYKLQSTLAISLHA 60
Query: 224 -------------------------------------------AGVNDQVEHAVELAELL 240
AGVND VEHA+ELAELL
Sbjct: 61 PNQKLRETIVPSAKSYPLDAIMKDCRDYFLETSRRVSFEYTLLAGVNDAVEHAIELAELL 120
Query: 241 HEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQ 300
HEWG G+HVNLIPFNPIEGS++QRPY K V AFA ALES K+T S+RQTRGLDASAACGQ
Sbjct: 121 HEWGPGYHVNLIPFNPIEGSEFQRPYNK-VQAFAAALESRKVTVSVRQTRGLDASAACGQ 179
Query: 301 LRNEFQKSPLRIDSSNSSSESDIAVA 326
LRNEFQKSPL+ DS+N S+ D+ +A
Sbjct: 180 LRNEFQKSPLQSDSNNLQSQLDVPIA 205
>gi|425463458|ref|ZP_18842797.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9809]
gi|389832859|emb|CCI23160.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9809]
Length = 337
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 184/319 (57%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ + A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGVH-SLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL +HEIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAHEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A CLNKDV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHCLNKDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQITFAVSLHASNQQVRAKLIPSADHYLLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA+L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL A+AACGQLR+
Sbjct: 314 TVRYSRGLAANAACGQLRS 332
>gi|443474683|ref|ZP_21064654.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
gi|443020573|gb|ELS34518.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
Length = 355
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 186/325 (57%), Gaps = 54/325 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL-QEAGWTVGRLPIFRTVTAADGTVKLLI 88
RG+Q W GA ++ P+++R + Q +GR I+ DGT K L+
Sbjct: 36 RGKQLYAWLYEKGA-RSLDDITVFPKAWREEFAQNPTVEIGRSQIYLHKQTRDGTEKFLL 94
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
KL D ++ETVGIP RLT CVS+QVGCP+ C FCATGKGGF RNL+ HEI+ Q
Sbjct: 95 KLADGEIVETVGIPTSK-----RLTVCVSTQVGCPMGCDFCATGKGGFRRNLAKHEIIDQ 149
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
VL ++E+ + RV+++VFMGMGEP+LN ++++ A +NKD+ IGQR IT+STVG+PN I
Sbjct: 150 VLTVQEVMQQRVSHIVFMGMGEPLLNYENLVGAIGVINKDIGIGQRNITVSTVGIPNQIP 209
Query: 209 KLASYKLQSTLAIR---------------------------------------------S 223
+ A LQ TLA+
Sbjct: 210 RFAEEHLQVTLAVSLHAPTQEVRAQVIPSADRYPLIALMDDCREYVEITGRRISFEYTLL 269
Query: 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283
AGVND E A ELA L+ G HVNLIP+NP+ +DY+RP ++A+ F LE HKI
Sbjct: 270 AGVNDSAEQAQELAYLIR--GFQSHVNLIPYNPVSDADYKRPSERAIQTFVQILEDHKIA 327
Query: 284 TSIRQTRGLDASAACGQLRNEFQKS 308
S+R+TRGL+A AACGQLR + +K+
Sbjct: 328 VSVRRTRGLEADAACGQLRGQHEKA 352
>gi|22299968|ref|NP_683215.1| hypothetical protein tll2425 [Thermosynechococcus elongatus BP-1]
gi|81742271|sp|Q8DG98.1|RLMN_THEEB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|22296153|dbj|BAC09977.1| tll2425 [Thermosynechococcus elongatus BP-1]
Length = 337
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 186/319 (58%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W R GA ++ + P+ +R L A +GR I A DGTVKLL+
Sbjct: 24 RGQQLHQWLYRKGA-RSLQEITVFPKQWRAAL--ADVEIGRSEIRYRHDAQDGTVKLLLA 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D IETVGIP D RLT CVSSQVGCP+ C FCATGKGG+ RNL+ HEI+ QV
Sbjct: 81 LADGETIETVGIPSSD-----RLTVCVSSQVGCPMACDFCATGKGGYRRNLACHEILDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L I+ RV++VVFMGMGEP+LNL +VL+A CLN+D+ IGQR ITISTVG+P I++
Sbjct: 136 LTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQR 195
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA ++LQ+TLA+ A
Sbjct: 196 LAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPLSQLIADCRAYVQQTGRRITFEYTVLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND+ +HA ELA+LL G HVNLIP+NPI + YQRP + + F L++ +T
Sbjct: 256 GVNDRPQHAEELAQLLR--GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTA 313
Query: 285 SIRQTRGLDASAACGQLRN 303
SIR++RGLD AACGQLR
Sbjct: 314 SIRRSRGLDRQAACGQLRQ 332
>gi|428210193|ref|YP_007094546.1| 23S rRNA m(2)A-2503 methyltransferase [Chroococcidiopsis thermalis
PCC 7203]
gi|428012114|gb|AFY90677.1| 23S rRNA m(2)A-2503 methyltransferase [Chroococcidiopsis thermalis
PCC 7203]
Length = 396
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 187/320 (58%), Gaps = 55/320 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA ++ P+ +R+ ++ ++GR I A D TVK L++
Sbjct: 80 RGKQLYDWIYHKGA-RSLSEISVFPKQWRSSVENV--SIGRSQIHHRTVAPDETVKYLLQ 136
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L DN+++ETVGIP + RLT CVS+QVGCP+ C FCATGKGGF RNL+ HEI+ QV
Sbjct: 137 LADNQIVETVGIPTDK-----RLTVCVSTQVGCPMACDFCATGKGGFRRNLAPHEIIDQV 191
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++ F+ RV+++VFMGMGEP+LN ++V+ A + LN+DV IGQR +T+STVG+P I K
Sbjct: 192 LTVQSDFQRRVSHIVFMGMGEPLLNTENVVAAIQSLNQDVGIGQRCMTLSTVGIPGRILK 251
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA Y+LQ TLA I A
Sbjct: 252 LAKYQLQVTLAVSLHASNQATREKLIPSAQKYSLHDLLSECREYVRLTGRRVTFEYILLA 311
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND ++ A ELA+LL G HVNLIP+NPI +DYQRP + AF L+ +I
Sbjct: 312 GVNDGIKQAAELAQLLR--GFQSHVNLIPYNPIREADYQRPSSSQIQAFVNVLKQQQIAV 369
Query: 285 SIRQTRGLDASAACGQLRNE 304
S+R +RGL+A AACGQLR +
Sbjct: 370 SVRYSRGLEAEAACGQLRAQ 389
>gi|434391734|ref|YP_007126681.1| 23S rRNA m(2)A-2503 methyltransferase [Gloeocapsa sp. PCC 7428]
gi|428263575|gb|AFZ29521.1| 23S rRNA m(2)A-2503 methyltransferase [Gloeocapsa sp. PCC 7428]
Length = 354
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 185/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W R G ++ P+++R + A ++GR I A D TVK L++
Sbjct: 43 RGRQLYEWIYRKGV-RSLVDISVFPKTWRAAV--ADVSIGRSQIHYRSVAPDETVKYLLQ 99
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP E RLT CVS+QVGCP+ C FCATGKGGF RNL++HEI+ QV
Sbjct: 100 LADGKIIETVGIPTEK-----RLTVCVSTQVGCPMACDFCATGKGGFMRNLAAHEIIDQV 154
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E + RV+++VFMGMGEP+LN +V+ A + LN+DV IGQR ITISTVG+P I +
Sbjct: 155 LTVQEDLQRRVSHIVFMGMGEPLLNTANVVAAVKSLNQDVGIGQRGITISTVGIPGHILR 214
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ TLA I A
Sbjct: 215 LAQHQLQVTLAVSLHAANQALREKLIPSARHYPLENLIDECRQYVQITGRRITFEYILLA 274
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND + A ELA+LL G HVNLIP+NPI +DYQRP + + AF L H+I
Sbjct: 275 GVNDNTKQAAELAQLLR--GFQTHVNLIPYNPIREADYQRPTFRGIQAFVDVLHQHQIAV 332
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 333 SVRYSRGLEADAACGQLR 350
>gi|166363996|ref|YP_001656269.1| ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa NIES-843]
gi|205829811|sp|B0JT33.1|RLMN_MICAN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|166086369|dbj|BAG01077.1| hypothetical protein MAE_12550 [Microcystis aeruginosa NIES-843]
Length = 337
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/319 (45%), Positives = 182/319 (57%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ + A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGVH-SLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL +HEIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAHEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A CLNKDV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHCLNKDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQITFAVSLHASNQQVRAKLIPSADHYLLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA+L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL AACGQLR+
Sbjct: 314 TVRYSRGLATDAACGQLRS 332
>gi|428200880|ref|YP_007079469.1| 2-vinyl bacteriochlorophyllide hydratase [Pleurocapsa sp. PCC 7327]
gi|427978312|gb|AFY75912.1| 23S rRNA m2A2503 methyltransferase [Pleurocapsa sp. PCC 7327]
Length = 372
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/335 (45%), Positives = 186/335 (55%), Gaps = 67/335 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA ++ P+ +R L A + + R I A+D T K L++
Sbjct: 39 RGKQLHQWLYEKGA-RSLGEISVFPKQWRETL--ADYPIYRSTIHYRSIASDKTRKYLLR 95
Query: 90 LEDNRLIETVGIPV-----EDEKGPM------------RLTACVSSQVGCPLRCSFCATG 132
L D +IETVGIP + E G RLT CVSSQVGCP+ C FCATG
Sbjct: 96 LADGLIIETVGIPTFKRGGDKETGGQGDWGTINPKSLERLTVCVSSQVGCPMACDFCATG 155
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG 192
KGGF RNL SHEIV QVL ++E F+ RVTN VFMGMGEP+LNL V+ A CLN+DV IG
Sbjct: 156 KGGFIRNLKSHEIVDQVLTVQEDFRQRVTNGVFMGMGEPLLNLNEVVAAVHCLNRDVGIG 215
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLA-------------------------------- 220
QR +TISTVG+PN I++LA + LQ TLA
Sbjct: 216 QRSLTISTVGIPNKIRQLAQHHLQVTLAVSLHASNQRLRERLIPSAKHYTLDNLIDDCRE 275
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
I AG ND EHA+ELA+LL G HVNLIP+NPI+ DYQRP +
Sbjct: 276 YVRITGRRVTFEYILLAGTNDLPEHALELAKLLR--GFQTHVNLIPYNPIQEVDYQRPDR 333
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ + AFA L +I S+R +RGL+A AACGQLR
Sbjct: 334 QRIEAFADILRQKRIAVSVRYSRGLEADAACGQLR 368
>gi|425450781|ref|ZP_18830604.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 7941]
gi|389768238|emb|CCI06602.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 7941]
Length = 337
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 185/319 (57%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ L A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGV-HSLADISVFPQEWRSKL--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL +HEIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAHEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A LN+DV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHSLNQDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------IRS------------------------------------A 224
LA + LQ T A +RS A
Sbjct: 196 LAEHNLQVTFAVSLHASNQQVRSKLIPSADHYPLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA+L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLTEHARELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL A+AACGQLR+
Sbjct: 314 TVRYSRGLAANAACGQLRS 332
>gi|428223189|ref|YP_007107359.1| 2-vinyl bacteriochlorophyllide hydratase [Synechococcus sp. PCC
7502]
gi|427996529|gb|AFY75224.1| 23S rRNA m2A2503 methyltransferase [Synechococcus sp. PCC 7502]
Length = 344
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/324 (43%), Positives = 185/324 (57%), Gaps = 53/324 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + A ++ P+S+R ++ + +GR I DGTVK L+K
Sbjct: 28 RGKQLHDW-LYHKAVRSLDEITVFPKSWREEIAQQSINLGRSEIHYRQPTPDGTVKYLLK 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++ETVGIP RLT CVSSQVGCP+ C FCATGKGGF RNL+ HEI+ QV
Sbjct: 87 LSDGAIVETVGIP-----SSQRLTVCVSSQVGCPMACDFCATGKGGFDRNLAKHEIIDQV 141
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++ + RV+++VFMGMGEP+LN +++ A LN+DV IGQRM+TISTVG+PN I K
Sbjct: 142 LTVQADMQRRVSHLVFMGMGEPLLNTDNLVGAIAVLNQDVGIGQRMMTISTVGIPNQILK 201
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA ++LQ+TLA+ A
Sbjct: 202 LAEHRLQATLAVSLHAPNQQLRQSLIPSADRYPIATLLKDCREYVQITGRRISFEYTLLA 261
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND A+ELA L+ W HVNLIP+NPI+ Y+RP + V AFA L + IT
Sbjct: 262 GVNDSPSQALELAGLIKGWQS--HVNLIPYNPIQDGTYERPSPRVVQAFADVLANANITV 319
Query: 285 SIRQTRGLDASAACGQLRNEFQKS 308
S+R+TRGL+A AACGQLR + S
Sbjct: 320 SVRRTRGLEAQAACGQLRGTHKLS 343
>gi|332708170|ref|ZP_08428163.1| 23S rRNA m(2)A-2503 methyltransferase [Moorea producens 3L]
gi|332353072|gb|EGJ32619.1| 23S rRNA m(2)A-2503 methyltransferase [Moorea producens 3L]
Length = 351
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 183/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W G ++ P+ +RN + A +GR + + A DGTVK L++
Sbjct: 39 RGRQLHGWIYEKGV-RSLSEISVFPKQWRNTV--ADVPIGRSRLHYRLEAKDGTVKYLLQ 95
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP P RLT CVSSQVGCP+ C FCATGKGGF+RNL+ HEIV QV
Sbjct: 96 LSDGQIIETVGIPT-----PKRLTVCVSSQVGCPMACDFCATGKGGFTRNLARHEIVDQV 150
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L + E F+ RV+NVVFMGMGEP+LN ++V+ A + LN+D+ IG R +TISTVG+P I++
Sbjct: 151 LTVREDFQERVSNVVFMGMGEPLLNTEAVVGAVKSLNQDLGIGARSLTISTVGIPGRIRQ 210
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ TLA I
Sbjct: 211 LAQHQLQVTLAVSLHASNQQLREQLIPSAKHYPLKALLDECRDYVNLTSRRVTFEYILLG 270
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
G+ND EHAVELA+ L G HVNLIP+NPI DYQRP + + F AL+ I
Sbjct: 271 GLNDCREHAVELAKNLR--GFQSHVNLIPYNPISEVDYQRPNYRRIQGFVEALKQQHIAV 328
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGLD AACGQLR
Sbjct: 329 SVRHSRGLDKDAACGQLR 346
>gi|126659786|ref|ZP_01730913.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
gi|126618938|gb|EAZ89680.1| hypothetical protein CY0110_11217 [Cyanothece sp. CCY0110]
Length = 342
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 186/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ P+++R +L++ + +GR I+ A D T K L+
Sbjct: 31 RGKQLHQWLYQKGA-RSLTDISVFPKTWREELKD--YQIGRSNIYHRTIADDQTRKYLLS 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGG++R+L+ EIV QV
Sbjct: 88 LGDELIIETVGIPTSK-----RLTVCVSSQVGCPMNCDFCATGKGGYTRDLTCAEIVDQV 142
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LNLK V++A + LN+DV IGQR +TISTVG+P I +
Sbjct: 143 LTVQEDFQQRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGIPKKILE 202
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA KLQ T A I
Sbjct: 203 LAHRKLQVTFAVSLHAPNQTLREQLIPSAKYYPLPKLLADCRKYVEITGRRVSFEYILLG 262
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E A++LA+ L G HVNLIP+NPIE +DYQRP +++ F LE KI
Sbjct: 263 GVNDSSEQAIQLAKCLK--GFQSHVNLIPYNPIEEADYQRPDTQSINLFRNVLEEQKIAV 320
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 321 SVRYSRGLEANAACGQLR 338
>gi|218438587|ref|YP_002376916.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
7424]
gi|218171315|gb|ACK70048.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7424]
Length = 355
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 184/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ P+S+R DL++ + +GR I A D T K L++
Sbjct: 39 RGKQLHQWIYEKGV-RSLNEISVFPKSWREDLKD--YPIGRSDIHYRSIAPDKTRKYLLR 95
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
LED +IETVGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL++ EIV QV
Sbjct: 96 LEDGLIIETVGIPTEK-----RLTVCVSSQVGCPMDCDFCATGKGGFTRNLTASEIVDQV 150
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LNLK V+ A R LN+DV IG R +TISTVG+P+ I+K
Sbjct: 151 LTVQEDFQRRVSHVVFMGMGEPLLNLKEVVPAVRTLNEDVGIGMRSLTISTVGLPSKIEK 210
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ TLA I A
Sbjct: 211 LAQHQLQLTLAVSLHAPNQKLREQLIPSAKRYPLKYLLDNCHKYVEMTKRRVTFEYILLA 270
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
VND HA ELA + G HVNLIP+NPI +DYQRP + + AF L+ KI
Sbjct: 271 DVNDLPHHAQELATQIR--GFQSHVNLIPYNPISEADYQRPNGERINAFMKILQEEKIAV 328
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL A AACGQLR
Sbjct: 329 SVRYSRGLQADAACGQLR 346
>gi|86607188|ref|YP_475951.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
JA-3-3Ab]
gi|123751756|sp|Q2JRQ8.1|RLMN_SYNJA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|86555730|gb|ABD00688.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-3-3Ab]
Length = 356
Score = 249 bits (637), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 187/327 (57%), Gaps = 56/327 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ + P+++R LQE + VGR + + + + DGTVK L++
Sbjct: 29 RGQQLHTWLYHKGI-RSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQ 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D LIETVGIP RLT CVSSQVGCP+ C+FCATGK G+ RNL HEI+ QV
Sbjct: 86 LADGELIETVGIPTA-----RRLTVCVSSQVGCPMACNFCATGKMGYRRNLKLHEILDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV++VVFMGMGEP+LN +V++A R LN+D+ IGQR IT+STVGVP I
Sbjct: 141 LTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPW 200
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA LQ TLA+ A
Sbjct: 201 LAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLDALIQDCRDYMLCSGRRISFEYTLLA 260
Query: 225 GVNDQVEHAVELAELLH---EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
GVND HA +LA LL + G HVNLIP+NPI +DYQRP+ V F LE H
Sbjct: 261 GVNDLPIHARQLAHLLRQASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHH 320
Query: 282 ITTSIRQTRGLDASAACGQLRNEFQKS 308
+ S+RQTRGLD++AACGQLR F ++
Sbjct: 321 VQVSVRQTRGLDSNAACGQLRGSFLRA 347
>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
gi|81709852|sp|Q7NIV3.1|RLMN_GLOVI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
Length = 348
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/294 (46%), Positives = 174/294 (59%), Gaps = 54/294 (18%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P+++R + VGR + R AADGT+K L+ D +ETVGIP + RLT
Sbjct: 49 PKAWREQVHSV--PVGRSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-----RLT 101
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML 173
CVSSQVGCP+ C FCATG+ GF+RNL HEIV QVL ++E F RV++VVFMGMGEP+L
Sbjct: 102 VCVSSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLL 161
Query: 174 NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------- 222
NL +V++A R LN D+ IGQR IT+STVGVP I++L +YKLQ TLA+
Sbjct: 162 NLGAVVQALRVLNGDIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLK 221
Query: 223 ----------------------------------SAGVNDQVEHAVELAELLHEWGRGHH 248
AG+ND+ HA ELA +L G H
Sbjct: 222 LIPTAQHYPIEELLEDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAILR--GFQSH 279
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VNLIP+NPIEG +Y+RP + V AF L HKI S+R TRGL+ +AACGQLR
Sbjct: 280 VNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQLR 333
>gi|86608506|ref|YP_477268.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|123751708|sp|Q2JMN2.1|RLMN_SYNJB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|86557048|gb|ABD02005.1| radical SAM enzyme, Cfr family [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 352
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 186/327 (56%), Gaps = 56/327 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G ++ + P+++R +Q + VGR I + A DGTVK L+
Sbjct: 29 RGQQLHAWIYQKGI-RSLEQVTVFPRAWREAVQS--YPVGRSRIVQRTEARDGTVKFLLG 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +LIETVGIP RLT CVSSQVGCP+ C FCATGK G+ RNL HEI+ QV
Sbjct: 86 LADGQLIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV++VVFMGMGEP+LN +V++A R LN+D+ IGQR IT+STVGVP I
Sbjct: 141 LTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAW 200
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA LQ TLA+ +
Sbjct: 201 LAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLDTLIQDCRDYMLRTGRRVSFEYTLLS 260
Query: 225 GVNDQVEHAVELAELLHEWGRGH---HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
GVND HA +LA+LL + R HVNLIP+NPI +DYQRP+ V F LE H+
Sbjct: 261 GVNDLPIHARQLAQLLQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQ 320
Query: 282 ITTSIRQTRGLDASAACGQLRNEFQKS 308
+ ++RQTRGLD +AACGQLR F +S
Sbjct: 321 VRATVRQTRGLDGNAACGQLRGSFLRS 347
>gi|427724588|ref|YP_007071865.1| 23S rRNA m(2)A-2503 methyltransferase [Leptolyngbya sp. PCC 7376]
gi|427356308|gb|AFY39031.1| 23S rRNA m(2)A-2503 methyltransferase [Leptolyngbya sp. PCC 7376]
Length = 344
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/324 (44%), Positives = 185/324 (57%), Gaps = 55/324 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G + P+++R ++ A + VGR I TA DGT K L+K
Sbjct: 29 RGKQLYQWLYQKGI-RNLEEITVFPKAWRAEM--ADYPVGRSQIHHYKTAPDGTRKYLLK 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D +IETVGIP E RLT CVSSQVGC + C FCATGK GF+R+L ++EI+ QV
Sbjct: 86 LDDGLIIETVGIPTEK-----RLTVCVSSQVGCAMACEFCATGKMGFTRHLEAYEILDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+NVVFMGMGEP+ NL+ V+++ LNKDV IGQR++TISTVGVPN I+
Sbjct: 141 LTVQEDFGQRVSNVVFMGMGEPLANLEQVIKSVHSLNKDVGIGQRLLTISTVGVPNQIRA 200
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA+ LQ T AI A
Sbjct: 201 LAAENLQVTFAISLHAPNQQLRETLIPTAKNYHFDQLLDECREYVDMTHRRISFEYILLA 260
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
VND EHA ELA+ H G HVNLIP+NPI ++QRP KK + F L+ HKI
Sbjct: 261 RVNDLPEHATELAK--HLKGFQSHVNLIPYNPISEEEFQRPGKKRINVFKQILQDHKIAV 318
Query: 285 SIRQTRGLDASAACGQLRNEFQKS 308
S+R ++GL+A AACGQLR K+
Sbjct: 319 SVRYSKGLEADAACGQLRTNLIKT 342
>gi|254415410|ref|ZP_05029171.1| radical SAM enzyme, Cfr family [Coleofasciculus chthonoplastes PCC
7420]
gi|196177885|gb|EDX72888.1| radical SAM enzyme, Cfr family [Coleofasciculus chthonoplastes PCC
7420]
Length = 359
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 182/321 (56%), Gaps = 61/321 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVP---QSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86
RGRQ W + GA RR + +S+R L + +GR + A D TVK
Sbjct: 48 RGRQLHNWIYQKGA----RRLSEISVFSKSWRQALVDV--PIGRSTLHYRSQAPDRTVKY 101
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L++L D +IETVGIP + RLT CVSSQVGCP+ C FCATGKGGF+RNL HEIV
Sbjct: 102 LLRLADGNIIETVGIPTAN-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLQPHEIV 156
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNT 206
QVL ++E F RV+NVVFMGMGEP+LNL+ VL A R LN+D+ IG R TISTVG+ +
Sbjct: 157 DQVLTVQEDFGQRVSNVVFMGMGEPLLNLEGVLAAVRSLNQDIGIGMRSQTISTVGIRDR 216
Query: 207 IKKLASYKLQSTLA---------------------------------------------I 221
I++LA +KLQ T A I
Sbjct: 217 IRQLAEHKLQLTFAVSLHASNQQLREQLIPSAKRYPLTDLLQECRDYVKITGRRVTFEYI 276
Query: 222 RSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
AG+NDQ EH +ELA+ H G HVNLIP+NPI DYQRP + + AF L+ H
Sbjct: 277 LLAGLNDQPEHGIELAQ--HLRGFQSHVNLIPYNPISEVDYQRPSPRRIQAFVETLKQHN 334
Query: 282 ITTSIRQTRGLDASAACGQLR 302
I S+R++RGL+ AACGQLR
Sbjct: 335 IAVSVRRSRGLEKDAACGQLR 355
>gi|443313835|ref|ZP_21043445.1| 23S rRNA m2A2503 methyltransferase [Synechocystis sp. PCC 7509]
gi|442776248|gb|ELR86531.1| 23S rRNA m2A2503 methyltransferase [Synechocystis sp. PCC 7509]
Length = 358
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 137/284 (48%), Positives = 173/284 (60%), Gaps = 52/284 (18%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+GR + A D TVK L++L DN+++ETVGIP E RLT CVSSQVGC + C
Sbjct: 81 IGRSTVHLRSQAPDKTVKYLLQLADNQVVETVGIPTEK-----RLTVCVSSQVGCAMACD 135
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
FCATGKGGF+RNLSS EIV QVL ++E FK RV+++VFMGMGEP+LN +VL+A LNK
Sbjct: 136 FCATGKGGFTRNLSSGEIVDQVLTVQEDFKRRVSHIVFMGMGEPLLNTDNVLKAIELLNK 195
Query: 188 DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------------- 222
DV IGQR IT+STVG+ + I+KLA ++LQ TLA+
Sbjct: 196 DVGIGQRCITLSTVGIRSRIRKLARHELQVTLAVSLHASNQNLRAELIPSANTYSLTDLI 255
Query: 223 --------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVND A ELA+LL G HVNLIP+NPI +DY
Sbjct: 256 TECKEYVQITGRRISFEYVLLAGVNDSPRQATELAQLLR--GFQCHVNLIPYNPIADADY 313
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+RP +A+ AF AL+ +I S+R +RGL+A+AACGQLR Q
Sbjct: 314 ERPTPRAIQAFVNALQQQQIAVSVRYSRGLEANAACGQLRTTTQ 357
>gi|411118623|ref|ZP_11391004.1| 23S rRNA m(2)A-2503 methyltransferase [Oscillatoriales
cyanobacterium JSC-12]
gi|410712347|gb|EKQ69853.1| 23S rRNA m(2)A-2503 methyltransferase [Oscillatoriales
cyanobacterium JSC-12]
Length = 338
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 181/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA ++ P+ +R + + +GR I A D TVK L++
Sbjct: 25 RGKQLHQWIYERGA-RSLADITVFPKQWRAETEAV--NIGRSTIHLRSLAPDDTVKFLLR 81
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D LIE VGIP E+ RLT CVSSQVGCP+ C FCATGKGGF RNL++HEIV QV
Sbjct: 82 LADGHLIEAVGIPTEN-----RLTVCVSSQVGCPMACDFCATGKGGFIRNLATHEIVDQV 136
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+N+VFMGMGEPMLN+ + A RCLN+D+ IGQR IT+STVG+P I++
Sbjct: 137 LTVQEEFQQRVSNIVFMGMGEPMLNIDHTIAAIRCLNQDIGIGQRGITVSTVGIPGHIRR 196
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
A ++LQ TLA I A
Sbjct: 197 FAEHQLQVTLAVSLHASNQALREQLIPSAHHYPLEALLEECRDYVRLTGRRVTFEYILLA 256
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
+ND EHA+ELA H G HVNLIP+NPI+ +Y+RP K V F L+ H +
Sbjct: 257 ELNDCPEHALELAA--HLRGFQSHVNLIPYNPIQEVNYKRPTKVRVQKFVSTLKKHHVAV 314
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 315 SVRYSRGLEADAACGQLR 332
>gi|354565937|ref|ZP_08985110.1| Ribosomal RNA large subunit methyltransferase N [Fischerella sp.
JSC-11]
gi|353546445|gb|EHC15893.1| Ribosomal RNA large subunit methyltransferase N [Fischerella sp.
JSC-11]
Length = 354
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 181/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ P+ +R ++ E +GR I A DGTVK L+K
Sbjct: 43 RGKQLHDWIYNKGV-RSLADISVFPKQWRAEVAEI--PIGRSTIHYRSVAPDGTVKYLLK 99
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP E RLT CVS+QVGCP+ C FCATGKGG+ RNL+ HEIV QV
Sbjct: 100 LADGFIIETVGIPTEK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLARHEIVDQV 154
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+N+VFMGMGEP+LN +VL A + LN+DV IGQR IT+STVG+ + I++
Sbjct: 155 LTVQEDFQQRVSNIVFMGMGEPLLNTDNVLAAIQSLNQDVGIGQRNITVSTVGIRDRIRQ 214
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
A +LQ TLA I A
Sbjct: 215 FAQNQLQVTLAVSLHAPNQTLREKLIPSARPYKIDDLLTECREYVDITGRRVSFEYILLA 274
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA+ L G HVNLIP+NPI DYQRP + + AF L+ H I
Sbjct: 275 GVNDLPEHAAELAKRLR--GFQSHVNLIPYNPIFEVDYQRPNRDRIQAFVKVLKQHHIAV 332
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 333 SVRYSRGLEADAACGQLR 350
>gi|425471742|ref|ZP_18850593.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9701]
gi|389882297|emb|CCI37211.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9701]
Length = 337
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/319 (45%), Positives = 180/319 (56%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ + A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGV-HSLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL +HEIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLQAHEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A LNKDV IGQR +TISTVG+P IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHSLNKDVGIGQRCLTISTVGLPQKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQITFAVSLHASNQQVRAKLIPSADHYPLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA+L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHAGELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL AACGQLR+
Sbjct: 314 TVRYSRGLATDAACGQLRS 332
>gi|428307337|ref|YP_007144162.1| 23S rRNA m(2)A-2503 methyltransferase [Crinalium epipsammum PCC
9333]
gi|428248872|gb|AFZ14652.1| 23S rRNA m(2)A-2503 methyltransferase [Crinalium epipsammum PCC
9333]
Length = 356
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 189/319 (59%), Gaps = 57/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLI 88
RG+Q W + G ++ +S+R LQ+ +GR + FR+V A D TVK L+
Sbjct: 45 RGQQLYQWIYKKGV-RSLSDISVFSKSWREQLQDV--PIGRSTLHFRSV-APDQTVKYLL 100
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
+L DN++IETVGIP + RLT CVSSQVGCP+ C FCATGKGGF RNL HEI+ Q
Sbjct: 101 RLADNQIIETVGIPTD-----QRLTVCVSSQVGCPMGCDFCATGKGGFIRNLERHEIIDQ 155
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
VL ++E F+ RV+++VFMGMGEP+LN ++V+ A + LN DV IGQR IT+STVG+P I+
Sbjct: 156 VLTVQEDFQRRVSHIVFMGMGEPLLNTENVVGAIKSLNTDVGIGQRSITLSTVGIPGRIR 215
Query: 209 KLASYKLQSTL---------AIRS------------------------------------ 223
KLA+ KLQ TL AIRS
Sbjct: 216 KLAAEKLQVTLAVSLHASNQAIRSQLIPSAHRYLLEDVLAECREYVELTGRRLTFEYILL 275
Query: 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283
G+ND EHA ELA H G HVNLIP+NPI ++YQRP + V FA AL+ I
Sbjct: 276 GGLNDLPEHAEELAR--HLRGFQSHVNLIPYNPIREAEYQRPNHRRVQDFADALKQRHIA 333
Query: 284 TSIRQTRGLDASAACGQLR 302
SIR +RGL+A AACGQLR
Sbjct: 334 VSIRYSRGLEADAACGQLR 352
>gi|425459432|ref|ZP_18838918.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9808]
gi|389822870|emb|CCI29378.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9808]
Length = 337
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/319 (45%), Positives = 182/319 (57%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ L A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGVH-SLADISVFPQEWRSKL--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL +HEIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAHEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A LN+DV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHSLNQDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQVTFAVSLHASNQQVRAKLIPSADHYPLTNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA EL +L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELVKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL A+AACGQLR+
Sbjct: 314 TVRYSRGLAANAACGQLRS 332
>gi|384252587|gb|EIE26063.1| hypothetical protein COCSUDRAFT_61059 [Coccomyxa subellipsoidea
C-169]
Length = 408
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 180/308 (58%), Gaps = 57/308 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VP S+R +L G T GR +F+ V AADGT K L++L D L+ETVGIP++D P RL
Sbjct: 99 VPGSWRQELVRQGVTTGRSKLFKEVRAADGTRKFLLQLHDGFLVETVGIPLDDSNKP-RL 157
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T VGCP+RC+FCATGKGGF+RNL HEIV QVL ++E F RV+NVV+MG GEP
Sbjct: 158 T------VGCPMRCTFCATGKGGFARNLRPHEIVDQVLTVQEQFGTRVSNVVYMGQGEPC 211
Query: 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLA----SYKLQSTLAIRS----- 223
L +SVL + + +N D+ +G R ITISTVGVPN+I LA + LQ TLA+
Sbjct: 212 LTWRSVLASAQFINADIGVGARHITISTVGVPNSIAMLAQALKQHSLQVTLAVSIHAPSQ 271
Query: 224 ----------------------------------------AGVNDQVEHAVELAELLHEW 243
AGVND A ELA +L
Sbjct: 272 EIREKIVPSAKAYPFEALLEDCSKFYSITGRRVTFEYTLLAGVNDSPAQAEELARVLTRH 331
Query: 244 G-RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G RG HVNLIP+N +E + ++RP K A AF AL+ I S+R TRG DA+AACGQLR
Sbjct: 332 GLRGAHVNLIPWNAVEDAQFKRPSKAAGRAFRDALDKAGIPVSMRVTRGTDAAAACGQLR 391
Query: 303 NEFQKSPL 310
NE Q++PL
Sbjct: 392 NEHQRTPL 399
>gi|422303295|ref|ZP_16390649.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9806]
gi|389791793|emb|CCI12460.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9806]
Length = 337
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/318 (45%), Positives = 181/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ L A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGV-HSLADISVFPQEWRSKL--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL +HEIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLQAHEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ +V+ A LN+DV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPAVVTAIHSLNQDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQVTFAVSLHASNQQVRAKLIPSADHYPLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA+L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHAGELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLR 302
++R +RGL AACGQLR
Sbjct: 314 TVRYSRGLATDAACGQLR 331
>gi|390440443|ref|ZP_10228770.1| Ribosomal RNA large subunit methyltransferase N [Microcystis sp.
T1-4]
gi|389836144|emb|CCI32896.1| Ribosomal RNA large subunit methyltransferase N [Microcystis sp.
T1-4]
Length = 337
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/319 (45%), Positives = 181/319 (56%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA + PQ +R+ L A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGA-HSLADISVFPQEWRSKL--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL ++EIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAYEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A LN+DV IGQR +TISTVG+PN IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHSLNQDVGIGQRCLTISTVGLPNKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQVTFAVSLHASNQQVRAKLIPSADHYPLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA EL +L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELVKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL AACGQLR+
Sbjct: 314 TVRYSRGLATDAACGQLRS 332
>gi|113476505|ref|YP_722566.1| radical SAM protein [Trichodesmium erythraeum IMS101]
gi|123056519|sp|Q110I1.1|RLMN_TRIEI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|110167553|gb|ABG52093.1| radical SAM enzyme, Cfr family [Trichodesmium erythraeum IMS101]
Length = 345
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 184/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA K+ + +R ++ + + +GR I A D TVK L+K
Sbjct: 34 RGKQLYQWIYQKGA-KSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLK 90
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGGFSRNL +HEI+ QV
Sbjct: 91 LSDGNIIETVGIPTYK-----RLTVCVSSQVGCPMACDFCATGKGGFSRNLEAHEIIDQV 145
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+++VFMGMGEP+LN K+VL A R LN+D+ IGQR+ITIST G+ + I++
Sbjct: 146 LTVQEDFERRVSHIVFMGMGEPLLNTKNVLAAVRSLNQDLGIGQRLITISTSGIRDRIRQ 205
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA +KLQ TLA I A
Sbjct: 206 LAQHKLQVTLAVSLHASNQRLREHLIPSAKFYPLADLISECREYVKITKRRISFEYILLA 265
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
ND +HA ELA+ + G HVNLIP+NPI DYQRP ++ + FA AL I
Sbjct: 266 SFNDLPDHARELAKNMR--GFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAV 323
Query: 285 SIRQTRGLDASAACGQLR 302
SIR +RGL+A+AACGQLR
Sbjct: 324 SIRYSRGLEANAACGQLR 341
>gi|428302049|ref|YP_007140355.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 6303]
gi|428238593|gb|AFZ04383.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 6303]
Length = 365
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 181/327 (55%), Gaps = 59/327 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA ++ +P+ +R+ + E VGR A DGTVK L+K
Sbjct: 40 RGKQIHDWIYNQGA-RSLSEISVLPKQWRSQIAEV--PVGRSTEHFRSQARDGTVKYLLK 96
Query: 90 LEDNRLIETVGIP---------VEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
L D ++ETVGIP D RLT CVS+QVGCP+ C FCATGKGGF RNL
Sbjct: 97 LADGEIVETVGIPNFKWGKNVPTGDASNLDRLTVCVSTQVGCPMACDFCATGKGGFKRNL 156
Query: 141 SSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITIST 200
+ EIV QVL ++E FK RV+N+VFMGMGEP+LN+ VL A CLNKDV IGQR +T+ST
Sbjct: 157 TRAEIVDQVLTVQEDFKERVSNIVFMGMGEPLLNVNHVLGAIHCLNKDVGIGQRNLTVST 216
Query: 201 VGVPNTIKKLASYKLQSTLAIR-------------------------------------- 222
VG+ + I++ A + LQ TLA+
Sbjct: 217 VGIRDRIRQFAQHHLQVTLAVSLHAPNQRLRQQLIPSANSYPIGDLMAECREYVEITGRR 276
Query: 223 -------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
AGVND EHA ELA LL G +HVNLIP+NPI DYQRP + AF
Sbjct: 277 ITFEYVLLAGVNDLPEHAAELARLLR--GFQNHVNLIPYNPINEVDYQRPESDRINAFVQ 334
Query: 276 ALESHKITTSIRQTRGLDASAACGQLR 302
L+ IT S+R +RGL+A AACGQLR
Sbjct: 335 ILQQQHITVSVRYSRGLEADAACGQLR 361
>gi|443325267|ref|ZP_21053970.1| 23S rRNA m2A2503 methyltransferase [Xenococcus sp. PCC 7305]
gi|442795109|gb|ELS04493.1| 23S rRNA m2A2503 methyltransferase [Xenococcus sp. PCC 7305]
Length = 355
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 180/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ P++FR + A +GR I TA D T K L+K
Sbjct: 32 RGKQLYQWLYQKGA-RSLNEITVFPKTFRESV--AQQAIGRSQIHYCSTAPDETRKYLLK 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E VGIP + RLT CVSSQVGCP+ C FCATGKGGF RNL ++EIV QV
Sbjct: 89 LHDGLIVEAVGIPTDK-----RLTVCVSSQVGCPMACDFCATGKGGFERNLKAYEIVDQV 143
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+NVVFMGMGEP++N++ V+ A + LN DV IGQR +TISTVG+ I++
Sbjct: 144 LTVQEDFGQRVSNVVFMGMGEPLINIEEVVSAVKSLNSDVGIGQRSLTISTVGIKGKIRE 203
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
L +KLQ T A I +
Sbjct: 204 LGQHKLQVTFAVSLHASNQNLRETLIPSAQHYSLESLLEECREYVQITGRRVTFEYILLS 263
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND +HA EL + H G HVNLIP+NPI DYQRP K+ + F G L+ KI
Sbjct: 264 GVNDLPQHAEELVQ--HLRGFQTHVNLIPYNPISEVDYQRPSKQRINQFKGILQQQKIAV 321
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 322 SVRYSRGLEANAACGQLR 339
>gi|172037640|ref|YP_001804141.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp.
ATCC 51142]
gi|354553482|ref|ZP_08972788.1| radical SAM enzyme, Cfr family [Cyanothece sp. ATCC 51472]
gi|205829743|sp|B1WU13.1|RLMN_CYAA5 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|171699094|gb|ACB52075.1| CHP48-containing protein [Cyanothece sp. ATCC 51142]
gi|353554199|gb|EHC23589.1| radical SAM enzyme, Cfr family [Cyanothece sp. ATCC 51472]
Length = 343
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 185/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G ++ P+++R +L++ + +GR I A D T K L+
Sbjct: 29 RGKQLHQWLYQKGV-RSLTEISVFPKAWREELKD--YPIGRSNIVHCTIAPDQTRKYLLS 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGG++RNL+ EIV QV
Sbjct: 86 LGDGLIIETVGIPTSK-----RLTVCVSSQVGCPMNCDFCATGKGGYTRNLTCAEIVDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LNLK V++A + LN+DV IGQR +TISTVGVP I +
Sbjct: 141 LTVQEDFQRRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGVPKKILE 200
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ T A I
Sbjct: 201 LAHHQLQVTFAVSLHAANQTLREQLIPSAKSYPLPKLLADCRKYVEITGRRVTFEYILLG 260
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E ++LA+ L G HVNLIP+NPIE +DYQRP +++ F LE HKI
Sbjct: 261 GVNDLPEQGIQLAKCLT--GFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAV 318
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 319 SVRYSRGLEANAACGQLR 336
>gi|425448384|ref|ZP_18828360.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9443]
gi|389730852|emb|CCI05020.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9443]
Length = 337
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 180/319 (56%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ L + + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGV-HSLADISVFPQEWRSKLSD--YPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL ++EIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAYEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A CLN+DV IGQR +TISTVG+P IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHCLNQDVGIGQRCLTISTVGLPQKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQVTFAVSLHASNQQVRAKLIPSADHYPLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA EL +L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELVKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL AACGQLR+
Sbjct: 314 TVRYSRGLATDAACGQLRS 332
>gi|428777926|ref|YP_007169713.1| 23S rRNA m(2)A-2503 methyltransferase [Halothece sp. PCC 7418]
gi|428692205|gb|AFZ45499.1| 23S rRNA m(2)A-2503 methyltransferase [Halothece sp. PCC 7418]
Length = 339
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/318 (45%), Positives = 182/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ P+ +R L++ +GR I A D T K L++
Sbjct: 27 RGKQLHQWLYQKGA-RSLHEITVFPKQWRAALEDQ--PIGRSTIAHRSIAPDETRKYLLR 83
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQ+GCP+ C FCATGKGGF+RNL ++EIV QV
Sbjct: 84 LADGEMIETVGIPT-----AKRLTVCVSSQIGCPMACDFCATGKGGFTRNLEAYEIVDQV 138
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L + E F+ RV++VVFMGMGEP+LN ++V++A + LN+DV IGQR +T+STVG+P I
Sbjct: 139 LTVAEDFERRVSHVVFMGMGEPLLNREAVVKAVKSLNQDVGIGQRCLTVSTVGIPKQIPL 198
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA KLQ TLAI A
Sbjct: 199 LAEEKLQITLAISLHASNQTLREQLIPSGGGYPLSDLIADCRKYVERTHRRVTFEYILLA 258
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND +HA ELA+LL G HVNLIP+NPI DYQRP K + AF LE KI
Sbjct: 259 GVNDTPDHAEELAQLLR--GFQTHVNLIPYNPISEVDYQRPDKNRIEAFQSVLEDAKIAV 316
Query: 285 SIRQTRGLDASAACGQLR 302
SIR +RGL+A AACGQLR
Sbjct: 317 SIRYSRGLEADAACGQLR 334
>gi|428771745|ref|YP_007163535.1| 23S rRNA m(2)A-2503 methyltransferase [Cyanobacterium aponinum PCC
10605]
gi|428686024|gb|AFZ55491.1| 23S rRNA m(2)A-2503 methyltransferase [Cyanobacterium aponinum PCC
10605]
Length = 342
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 182/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA+ + P+ +R + +A +GR + TA+D T K L+K
Sbjct: 30 RGKQLYQWLYEKGAT-SLMDITVFPKQWREN--QAENIIGRSQVHYCSTASDRTCKYLLK 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP + RLT CVSSQVGC + C FCATGKGGF+RNL +HEI+ Q+
Sbjct: 87 LADGLIIETVGIPTDK-----RLTVCVSSQVGCIMACDFCATGKGGFTRNLYAHEIIDQI 141
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++ F RV+NVVFMGMGEP+LNL V++A + +N+DV IG R +TISTVG+PN I +
Sbjct: 142 LTVQNDFGERVSNVVFMGMGEPLLNLPQVVKAIKSINEDVGIGARSLTISTVGLPNKILE 201
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA +KLQ T A I +
Sbjct: 202 LAQHKLQITFAVSLHASNQAVREKLIPSANHYPLEQLLADCREYVKMTGRRVTFEYILLS 261
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND +HA ELA+ LH G HVNLIP+NPI +DYQRP + V F L+ KI
Sbjct: 262 GVNDLPQHAQELAQHLH--GFQTHVNLIPYNPISEADYQRPSPERVSQFKKLLQQEKIAV 319
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGLDA AACGQLR
Sbjct: 320 SVRYSRGLDADAACGQLR 337
>gi|218246284|ref|YP_002371655.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
8801]
gi|254807168|sp|B7K4N4.1|RLMN_CYAP8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|218166762|gb|ACK65499.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8801]
Length = 340
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 186/319 (58%), Gaps = 57/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLI 88
RG+Q W GA ++ P+++R L + +GR I +RTV A D T K L+
Sbjct: 29 RGKQLHQWLYEKGA-RSLDEISVFPKTWREKL--INYPIGRSTIDYRTV-APDATRKYLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGG+ R+L +HEIV Q
Sbjct: 85 CLGDGLIIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKGGYQRHLRAHEIVDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
VL ++E F+ RV++VVFMGMGEP+LNL+ V+++ + LN+D+ IGQR +TISTVG+P I
Sbjct: 140 VLTVQEDFQRRVSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIGQRSLTISTVGLPQKII 199
Query: 209 KLASYKLQSTLAIR---------------------------------------------S 223
+LA + LQ TLA+
Sbjct: 200 QLAHHHLQVTLAVSLHASNQPLRETLIPSAQHYTLKNLLADCREYVNITGRRISFEYVLL 259
Query: 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283
GVND E A+ELA LL G HVNLIP+NPI+ +DYQRP + + F LE HKI
Sbjct: 260 GGVNDLPEQAIELANLLK--GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIA 317
Query: 284 TSIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 318 VSVRYSRGLEANAACGQLR 336
>gi|440752689|ref|ZP_20931892.1| radical SAM superfamily protein [Microcystis aeruginosa TAIHU98]
gi|440177182|gb|ELP56455.1| radical SAM superfamily protein [Microcystis aeruginosa TAIHU98]
Length = 337
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 182/319 (57%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ L A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGVH-SLADISVFPQEWRSKL--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL ++EIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAYEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A LN+DV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHSLNQDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQVTFAVSLHASNQQVRAKLIPSADHYPLTNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA EL +L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELVKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL A+AACGQLR+
Sbjct: 314 TVRYSRGLAANAACGQLRS 332
>gi|425437872|ref|ZP_18818284.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9432]
gi|443651805|ref|ZP_21130738.1| radical SAM superfamily protein [Microcystis aeruginosa DIANCHI905]
gi|159025948|emb|CAO86242.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389677068|emb|CCH93979.1| Ribosomal RNA large subunit methyltransferase N [Microcystis
aeruginosa PCC 9432]
gi|443334446|gb|ELS48958.1| radical SAM superfamily protein [Microcystis aeruginosa DIANCHI905]
Length = 337
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 181/319 (56%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ L A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGVH-SLADISVFPQEWRSKL--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL ++EIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAYEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A LN+DV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHSLNQDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQVTFAVSLHASNQQVRAKLIPSADHYPLTNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA EL +L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELVKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL A AACGQLR+
Sbjct: 314 TVRYSRGLAADAACGQLRS 332
>gi|300866402|ref|ZP_07111100.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
PCC 6506]
gi|300335612|emb|CBN56260.1| Ribosomal RNA large subunit methyltransferase N [Oscillatoria sp.
PCC 6506]
Length = 349
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/284 (48%), Positives = 170/284 (59%), Gaps = 52/284 (18%)
Query: 64 AGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCP 123
A +GR I A D TVK L+KL D +++E VGIP E RLT CVSSQVGCP
Sbjct: 69 ANVPIGRSIIHHRSVAPDQTVKYLLKLADGQIVEAVGIPTEK-----RLTVCVSSQVGCP 123
Query: 124 LRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHR 183
+ C FCATGKGGF R+L+ HEIV QVL ++E FK RV+++VFMGMGEP+LNL++V+ A +
Sbjct: 124 MACDFCATGKGGFQRHLAKHEIVDQVLTVQEDFKRRVSHIVFMGMGEPLLNLENVVAAVK 183
Query: 184 CLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA----------------------- 220
CLN+DV IGQR ITISTVG+ + I+ LA + LQ TLA
Sbjct: 184 CLNEDVGIGQRNITISTVGIRDRIRLLAEHHLQVTLAVSLHGSNQKLREKLIPSARNYRF 243
Query: 221 ----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
I AGVND EHA ELA+ L G HVNLIP+NPI
Sbjct: 244 DELMEECREYVKITGRRLSVEYILLAGVNDLPEHAAELADNLR--GFQCHVNLIPYNPIA 301
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+DY+RP + + F AL++ I S+R +RGLDA AACGQLR
Sbjct: 302 EADYERPSQYRIKVFVEALKARHIAVSVRYSRGLDADAACGQLR 345
>gi|428319373|ref|YP_007117255.1| 23S rRNA m(2)A-2503 methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
gi|428243053|gb|AFZ08839.1| 23S rRNA m(2)A-2503 methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
Length = 369
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 182/323 (56%), Gaps = 65/323 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTV-----TAADGTV 84
RG+Q W GA R F +E TV ++PI R+ A D TV
Sbjct: 58 RGKQLYQWIYEKGA-----RSISDISVFSKQWRE---TVAKIPIGRSTIHYRSVAPDATV 109
Query: 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHE 144
K L+KL D ++IETVGIP E RLT CVS+QVGC + C FCATGKGGF RNL HE
Sbjct: 110 KYLLKLADGQIIETVGIPTEK-----RLTVCVSAQVGCAMGCDFCATGKGGFKRNLEKHE 164
Query: 145 IVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP 204
IV QVL +++ F RV+++VFMGMGEP+LN +V+ A +CLN+DV IGQR IT+STVG+
Sbjct: 165 IVDQVLTVQQDFGRRVSHIVFMGMGEPLLNFDNVVAAVKCLNQDVGIGQRNITVSTVGIR 224
Query: 205 NTIKKLASYKLQSTLA---------------------------------IRS-------- 223
N I +LA ++LQ TLA +RS
Sbjct: 225 NRISQLAEHQLQVTLAVSLHASNQRLREELIPSARPYPLGELIAECREYVRSTGRRLSFE 284
Query: 224 ----AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
AGVND EHA ELA H G HVNLIP+NPI+ +DY+RP + +F L+
Sbjct: 285 YVLLAGVNDLPEHAAELAT--HLRGFQCHVNLIPYNPIQEADYKRPTPNRINSFVAVLKE 342
Query: 280 HKITTSIRQTRGLDASAACGQLR 302
KI S+R +RGL+A AACGQLR
Sbjct: 343 KKIAVSVRYSRGLEADAACGQLR 365
>gi|257059331|ref|YP_003137219.1| ribosomal RNA large subunit methyltransferase N [Cyanothece sp. PCC
8802]
gi|256589497|gb|ACV00384.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 8802]
Length = 340
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 185/319 (57%), Gaps = 57/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLI 88
RG+Q W GA ++ P+ +R L + +GR I +RTV A D T K L+
Sbjct: 29 RGKQLHQWLYEKGA-RSLDEISVFPKIWREKL--INYPIGRSTIDYRTV-APDATRKYLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGG+ R+L +HEIV Q
Sbjct: 85 CLGDGLIIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKGGYQRHLRAHEIVDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
VL ++E F+ RV++VVFMGMGEP+LNL+ V+++ + LN+D+ IGQR +TISTVG+P I
Sbjct: 140 VLTVQEDFQRRVSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIGQRSLTISTVGLPQKII 199
Query: 209 KLASYKLQSTLAIR---------------------------------------------S 223
+LA + LQ TLA+
Sbjct: 200 QLAHHHLQVTLAVSLHASNQPLRETLIPSAQHYPLKNLLADCREYVNITGRRISFEYVLL 259
Query: 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283
GVND E A+ELA LL G HVNLIP+NPI+ +DYQRP + + F LE HKI
Sbjct: 260 GGVNDLPEQAIELANLLK--GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIA 317
Query: 284 TSIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 318 VSVRYSRGLEANAACGQLR 336
>gi|33865151|ref|NP_896710.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
WH 8102]
gi|81575037|sp|Q7U8K0.1|RLMN_SYNPX RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|33638835|emb|CAE07132.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 344
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 182/332 (54%), Gaps = 59/332 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RGRQ W GA ++ +P+++R L+E G VGRL AAD T KLL
Sbjct: 21 PFRGRQLHDWLYAKGA-RSLSEITVLPKAWRESLKEDGVEVGRLKEVHRSVAADATTKLL 79
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ +D IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV
Sbjct: 80 LSTDDGETIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLRTHEIVD 134
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL++ E+ R +++VFMGMGEP+LN ++VL+A RCLN D+ IGQR IT+STVGVP T+
Sbjct: 135 QVLSVREVMDRRPSHIVFMGMGEPLLNSQAVLDAIRCLNDDLGIGQRRITVSTVGVPKTL 194
Query: 208 KKLASYKL------QSTLA----------------------------------------- 220
+LA L Q TLA
Sbjct: 195 PQLAELALATLGRAQFTLAVSLHAPNQALREELIPTAHAYPYEALLEDCRHYLAVTGRRV 254
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I G+ND EHA ELA+ + G HVNLI +NPIE ++QRP + + F
Sbjct: 255 SFEYILLGGLNDAPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFQRPTRARIEGFQRV 312
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
LE + S+R +RGLD +AACGQLR Q S
Sbjct: 313 LERRGVAVSLRASRGLDQNAACGQLRRRRQGS 344
>gi|307153286|ref|YP_003888670.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
gi|306983514|gb|ADN15395.1| radical SAM enzyme, Cfr family [Cyanothece sp. PCC 7822]
Length = 350
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 183/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W GA ++ P+S+R ++++ + +GR I A D T K L++
Sbjct: 39 RGKQLYQWLYEKGA-RSLSDISVFPKSWREEVKD--YPIGRSQIHHRSIAPDKTRKYLLR 95
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D +IETVGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL+ HEIV QV
Sbjct: 96 LQDGLIIETVGIPTEK-----RLTVCVSSQVGCPMDCDFCATGKGGFTRNLAPHEIVDQV 150
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LNLK+V+ A LN+DV IG R +TISTVG+P I++
Sbjct: 151 LTVQEDFQRRVSHVVFMGMGEPLLNLKAVVSAVNILNQDVGIGMRSLTISTVGLPAKIEQ 210
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ T A I A
Sbjct: 211 LARHQLQVTFAVSLHAPNQALREQLIPSAKHYPLKNLLEDCHKYVEMTKRRVTFEYILLA 270
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E A ELA + G HVNLIP+NPI +DY+RP + + AF L+ I
Sbjct: 271 GVNDLPEQAQELAVQIR--GFQSHVNLIPYNPISEADYKRPNSQRINAFLNILQQENIAV 328
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+ AACGQLR
Sbjct: 329 SVRYSRGLETDAACGQLR 346
>gi|282900428|ref|ZP_06308378.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
CS-505]
gi|281194741|gb|EFA69688.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
CS-505]
Length = 360
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 183/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G K P+++R Q A ++GR I A DGT K L++
Sbjct: 41 RGKQLHNWIYHHGVHKISD-ISVFPKTWRE--QVADVSIGRSSIDHQSFATDGTEKYLLQ 97
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP + RLT CVS+QVGCP+ C FCATGKGGF RNL+ EIV QV
Sbjct: 98 LADGEIIETVGIPSDK-----RLTVCVSTQVGCPMACDFCATGKGGFKRNLNRGEIVDQV 152
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN ++V+ A +CLN+D+ IGQR +T+STVG+ + I++
Sbjct: 153 LTVQENFQQRVSHVVFMGMGEPLLNTENVILALKCLNQDLGIGQRSLTVSTVGIRDRIRQ 212
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ TLA I A
Sbjct: 213 LAEHHLQVTLAVSLHAPNQKLREQIIPSAKTYPIEQLLAECREYVEITGRRVTFEYILLA 272
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E A+EL++ L G HVNLIP+NPI+ +DYQRP + + AF L+ KI
Sbjct: 273 GVNDLPEQALELSQRLR--GFQSHVNLIPYNPIQEADYQRPNRDRIHAFVNILQQQKIAV 330
Query: 285 SIRQTRGLDASAACGQLR 302
SIR +RGL+ AACGQLR
Sbjct: 331 SIRYSRGLEVDAACGQLR 348
>gi|75909016|ref|YP_323312.1| ribosomal RNA large subunit methyltransferase N [Anabaena
variabilis ATCC 29413]
gi|123772627|sp|Q3M9B9.1|RLMN_ANAVT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|75702741|gb|ABA22417.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena variabilis ATCC
29413]
Length = 355
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 170/282 (60%), Gaps = 52/282 (18%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+GR I A+DGTVK L++L D ++ETVGIP + RLT CVS+QVGCP+ C
Sbjct: 78 IGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTDK-----RLTVCVSTQVGCPMACD 132
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
FCATGKGG+ RNL HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL A R LN+
Sbjct: 133 FCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAALRSLNQ 192
Query: 188 DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS------- 223
DV IGQR +T+STVG+ + I +LA + LQ TLA+ RS
Sbjct: 193 DVGIGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLL 252
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVND EHA+EL++ H G +HVNLIP+NPI DY
Sbjct: 253 AECREYVAITGRRISFEYILLAGVNDLPEHALELSK--HLRGFQNHVNLIPYNPISEVDY 310
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+RP + AF L+ I S+R +RGL+A AACGQLR +
Sbjct: 311 KRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTK 352
>gi|427729035|ref|YP_007075272.1| 2-vinyl bacteriochlorophyllide hydratase [Nostoc sp. PCC 7524]
gi|427364954|gb|AFY47675.1| 23S rRNA m2A2503 methyltransferase [Nostoc sp. PCC 7524]
Length = 358
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 182/319 (57%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ P+ +R + A + +GR I A D VK L++
Sbjct: 44 RGKQLHDWIYHKGV-RSLADISVFPKQWRATV--ADFPIGRSQIHYRAVAPDDAVKYLLQ 100
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +++ETVGIP E RLT CVS+QVGCP+ C FCATGKGG+ RNL HEIV QV
Sbjct: 101 LADGQIVETVGIPTEK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLDRHEIVDQV 155
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN ++VL A + LN+DV IGQR +T+STVG+ + I++
Sbjct: 156 LTVQEDFQQRVSHVVFMGMGEPLLNTENVLAAIKSLNQDVGIGQRSLTVSTVGIRDRIRE 215
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA LQ TLA I A
Sbjct: 216 LAQEHLQVTLAVSLHAPNQALREQIIPSARPYPIEDLLTECREYVAITGRRISFEYILLA 275
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA+ELA+ L G HVNLIP+NPIE DY+RP + + AF L+ +I
Sbjct: 276 GVNDLPEHALELAKRLR--GFQSHVNLIPYNPIEEVDYKRPNRDRIQAFLKVLQQQQIAV 333
Query: 285 SIRQTRGLDASAACGQLRN 303
S+R +RGL+A AACGQLR
Sbjct: 334 SVRYSRGLEADAACGQLRT 352
>gi|428310598|ref|YP_007121575.1| 23S rRNA m(2)A-2503 methyltransferase [Microcoleus sp. PCC 7113]
gi|428252210|gb|AFZ18169.1| 23S rRNA m(2)A-2503 methyltransferase [Microcoleus sp. PCC 7113]
Length = 404
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 185/352 (52%), Gaps = 78/352 (22%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQE--AGWTVGRLPIFRTVTAADGTVKLL 87
RGRQ W + GA R F +E A +GR + + DGTVK L
Sbjct: 60 RGRQLHQWIYQKGA-----RSLTEISVFSKQWREVVADVPIGRSTLHYRSQSPDGTVKYL 114
Query: 88 IKLEDNRLIETVGIPV------------EDEKGP------------MRLTACVSSQVGCP 123
++L D +IETVGIP +D+ P RLT CVSSQVGCP
Sbjct: 115 LRLADGHIIETVGIPTFARGGEEAWDGWDDDFSPNPKSQNSNSKTKERLTVCVSSQVGCP 174
Query: 124 LRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHR 183
+ C FCATGKGGFSRNL HEIV QVL ++E F RV+NVVFMGMGEP+LNL+ VL A +
Sbjct: 175 MACDFCATGKGGFSRNLKRHEIVDQVLTVQEDFGQRVSNVVFMGMGEPLLNLEEVLGAVK 234
Query: 184 CLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------- 222
+N+DV IG R +T+STVGVP I++LA + LQ TLAI
Sbjct: 235 SINQDVGIGMRSLTLSTVGVPGRIRQLAEHHLQITLAISLHASNQALREQLIPTAKRYPL 294
Query: 223 ------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
+ +ND EHA+ELA+ H G HVNLIP+NPI
Sbjct: 295 DTLLEECREYVQLTGRRVTFEYILLSELNDLPEHAIELAK--HLRGFQSHVNLIPYNPIT 352
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
DYQRP + + AF ALE H I S+R++RGL+ AACGQLR PL
Sbjct: 353 EVDYQRPTPRRIQAFVEALEKHHIAVSVRRSRGLEKDAACGQLRASKIPQPL 404
>gi|443315063|ref|ZP_21044576.1| 23S rRNA m2A2503 methyltransferase [Leptolyngbya sp. PCC 6406]
gi|442785337|gb|ELR95164.1| 23S rRNA m2A2503 methyltransferase [Leptolyngbya sp. PCC 6406]
Length = 361
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 165/286 (57%), Gaps = 57/286 (19%)
Query: 67 TVGRLPIFRT-----VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVG 121
TV +P+ R+ A DGTVK L++L D +IE VGIP RLT CVSSQVG
Sbjct: 75 TVADVPLGRSELHLRSVAPDGTVKYLLRLADGHIIEAVGIPTAK-----RLTVCVSSQVG 129
Query: 122 CPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEA 181
CP+ C FCATGKGGF+RNL++HEIV QVL ++E F RV+N+VFMGMGEP+LN SV+ A
Sbjct: 130 CPMACDFCATGKGGFARNLATHEIVDQVLTVQEDFGQRVSNIVFMGMGEPLLNTDSVVAA 189
Query: 182 HRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA--------------------- 220
RCLN DV I QR IT+STVG+P I++LA LQ TLA
Sbjct: 190 IRCLNGDVGISQRAITLSTVGIPGRIRQLAEQHLQVTLAVSLHASNQGLREQLIPSARAY 249
Query: 221 ------------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
I AG+ND EHA ELA+L+ G HVNLIP+NP
Sbjct: 250 PLTALLTECRDYVAVTGRRVSFEYILLAGLNDLPEHAGELADLV--GGFQSHVNLIPYNP 307
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
I DYQRP + FA AL + S+R +RGL+ AACGQLR
Sbjct: 308 ISEVDYQRPSDYDIQDFAEALRERHVAVSVRYSRGLEKDAACGQLR 353
>gi|443320513|ref|ZP_21049608.1| 23S rRNA m2A2503 methyltransferase [Gloeocapsa sp. PCC 73106]
gi|442789759|gb|ELR99397.1| 23S rRNA m2A2503 methyltransferase [Gloeocapsa sp. PCC 73106]
Length = 343
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 187/328 (57%), Gaps = 62/328 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWT---VGRLPIFRTVTAADGTVKL 86
RG+Q W + GA ++ P+ +R A W +GR I A D T K
Sbjct: 29 RGKQLYQWLYQKGA-RSLAEISVFPKQWR-----ATWETDPIGRSNIDECSIAPDKTRKY 82
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L++LED+++IETVGIP RLT CVSSQVGC + C FCATGKGGF RNL +HEI+
Sbjct: 83 LLRLEDDQIIETVGIPTSK-----RLTVCVSSQVGCAMACDFCATGKGGFIRNLQAHEII 137
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNT 206
QVL ++ F+ RVT+VVFMGMGEP+LNLK VL A R +N D+ IG R +T+S+VG+P
Sbjct: 138 DQVLTVQGDFEQRVTHVVFMGMGEPLLNLKQVLPALRSINHDIGIGARSLTLSSVGIPGK 197
Query: 207 IKKLASYKLQSTLA---------IRS---------------------------------- 223
I++LA Y+LQ T A +RS
Sbjct: 198 IRELAEYRLQITFALSLHAPNQTLRSRLVPKAIHYPVKELIAECRDYVKLTGRRVTFEYI 257
Query: 224 --AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
GVND EHA ELA+LL G HVNLIP+NPI DY+RP V AFA +L +
Sbjct: 258 LLDGVNDLPEHAQELAQLLR--GFQSHVNLIPYNPIAEVDYRRPSPDRVQAFADSLTAQN 315
Query: 282 ITTSIRQTRGLDASAACGQLR-NEFQKS 308
I SIR +RGL A+AACGQLR N+ Q++
Sbjct: 316 IAVSIRVSRGLAANAACGQLRANQVQRT 343
>gi|119510469|ref|ZP_01629602.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
gi|119464891|gb|EAW45795.1| hypothetical protein N9414_01747 [Nodularia spumigena CCY9414]
Length = 352
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 182/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ P+ +R ++ E +GR I A DGT+K L+K
Sbjct: 42 RGKQLHDWIYHKGV-RSLADISAFPKQWRAEVAEV--PIGRSTIHHRAVAPDGTIKYLLK 98
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP RLT CVS+QVGCP+ C FCATGKGGF+RNL+ HEIV QV
Sbjct: 99 LADGQIIETVGIPTAK-----RLTVCVSTQVGCPMACDFCATGKGGFTRNLARHEIVDQV 153
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VV+MGMGEP+LN ++VL++ + LN+DV IGQR +T+STVG+ + I++
Sbjct: 154 LTVQEDFQQRVSHVVYMGMGEPLLNTENVLKSLKSLNQDVGIGQRSLTVSTVGIRDRIRQ 213
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA + LQ TLA+ A
Sbjct: 214 LAQHNLQVTLAVSLHAPNQALREELIPSARPYPLEDLLDECREYVEITRRRISFEYVLLA 273
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
G ND EHA++LA+ L G HVNLIP+NPI DY+RP + AF L+
Sbjct: 274 GFNDLPEHAMQLAKCLR--GFQSHVNLIPYNPISEVDYKRPSSDRIQAFVNILKQQNTAV 331
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 332 SVRYSRGLEADAACGQLR 349
>gi|334120777|ref|ZP_08494855.1| Ribosomal RNA large subunit methyltransferase N [Microcoleus
vaginatus FGP-2]
gi|333456049|gb|EGK84687.1| Ribosomal RNA large subunit methyltransferase N [Microcoleus
vaginatus FGP-2]
Length = 371
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 182/323 (56%), Gaps = 65/323 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTV-----TAADGTV 84
RG+Q W GA R F +E TV ++PI R+ A D TV
Sbjct: 58 RGKQLYQWIYEKGA-----RSLSDISVFSKQWRE---TVAKIPIGRSTIHYRSVAPDATV 109
Query: 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHE 144
K L+KL D ++IETVGIP + RLT CVS+QVGC + C FCATGKGGF RNL HE
Sbjct: 110 KYLLKLADGQIIETVGIPTDK-----RLTVCVSAQVGCAMGCDFCATGKGGFKRNLEKHE 164
Query: 145 IVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP 204
IV QVL +++ F RV+++VFMGMGEP+LN +V+ A +CLN+DV IGQR ITISTVG+
Sbjct: 165 IVDQVLTVQQDFGRRVSHIVFMGMGEPLLNFDNVVAAVQCLNQDVGIGQRNITISTVGIR 224
Query: 205 NTIKKLASYKLQSTLA---------------------------------IRS-------- 223
N I +LA ++LQ TLA +RS
Sbjct: 225 NRISQLAEHQLQVTLAVSLHASNQRLREELIPSARPYPLGELIAECREYVRSTGRRLSFE 284
Query: 224 ----AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
AGVND EHA ELA H G HVNLIP+NPI+ ++Y+RP + +F L+
Sbjct: 285 YVLLAGVNDLPEHAAELAT--HLRGFQCHVNLIPYNPIQEAEYKRPTPNRINSFVSVLKE 342
Query: 280 HKITTSIRQTRGLDASAACGQLR 302
KI S+R +RGL+A AACGQLR
Sbjct: 343 KKIAVSVRYSRGLEADAACGQLR 365
>gi|308804299|ref|XP_003079462.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
gi|116057917|emb|CAL54120.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
Length = 385
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 192/347 (55%), Gaps = 78/347 (22%)
Query: 47 RRRPRPV------PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVG 100
+RR R + P+ R +++AGW+ GRL + + DG K+ +++ + L+E VG
Sbjct: 39 KRRARAIEDMELLPREMRRAMEDAGWSTGRLDVVKGSLGRDGAGKISVRVGERELVEAVG 98
Query: 101 IP-----VEDEKGPM-------------------RLTACVSSQVGCPLRCSFCATGKGGF 136
IP D G + RLTACVSSQVGC ++CSFCATG GF
Sbjct: 99 IPDASCYARDGSGEVLGRADVETMFRGVDGWDKNRLTACVSSQVGCAMKCSFCATGLQGF 158
Query: 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMI 196
RNLS+ EIV QVL +EE++ RV++VVFMGMGEPMLN+K+V+ A RCLN+D+ IG R I
Sbjct: 159 KRNLSASEIVSQVLELEELYGKRVSDVVFMGMGEPMLNMKAVVGAIRCLNEDIGIGGRHI 218
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIR---------------------------------- 222
T+STVG+PN++ KLA KLQ+TLAI
Sbjct: 219 TVSTVGIPNSLAKLAKEKLQATLAISLHAPDQETRLRIVPSAKHYPYEDLLDDVKMYFRE 278
Query: 223 -----------SAGVNDQVEHAVELAELL-HEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
AGVND A L+ +L ++G G H+N+IP+N IEG D+ +P + AV
Sbjct: 279 TGRRVTFEYTLLAGVNDSPSQAQALSRILKRKFGAGAHLNVIPWNSIEGVDHVKPSRNAV 338
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNS 317
F GAL I+ +IR+TRG D SAACG L +F++ L S N+
Sbjct: 339 HRFCGALGG--ISHTIRRTRGDDVSAACGMLTGDFERRSLGRRSMNA 383
>gi|88807336|ref|ZP_01122848.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
gi|88788550|gb|EAR19705.1| hypothetical protein WH7805_12333 [Synechococcus sp. WH 7805]
Length = 351
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 183/329 (55%), Gaps = 59/329 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA + + +P+S+R LQ++G ++GRL AAD T KLL+
Sbjct: 31 RGRQLHDWLYAKGA-RDLQEITVLPKSWRASLQDSGVSIGRLKEQDRKVAADATTKLLLA 89
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+D +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV QV
Sbjct: 90 TDDGETLETVGIPTD-----QRLTVCVSSQVGCPMACRFCATGKGGLQRSLYTHEIVAQV 144
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E+ + R ++VVFMGMGEP+LN+++VL++ RCLN D+ IGQR IT+STVGVP T+ K
Sbjct: 145 LSVREVMQRRPSHVVFMGMGEPLLNIEAVLDSIRCLNDDLGIGQRRITVSTVGVPRTLPK 204
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 205 LAELAMERLGRAQFTLAVSLHAPNQTLREELIPTAHAYPYDALLDDCRHYLAITGRRVSF 264
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND HA ELA+ + G HVNLI +NPIE ++QRP + + F LE
Sbjct: 265 EYILLGGLNDHAAHAEELADRV--GGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLE 322
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQK 307
+ S+R +RGLD AACGQLR Q+
Sbjct: 323 GRGVAVSLRASRGLDQDAACGQLRRSRQQ 351
>gi|428213406|ref|YP_007086550.1| 23S rRNA m(2)A-2503 methyltransferase [Oscillatoria acuminata PCC
6304]
gi|428001787|gb|AFY82630.1| 23S rRNA m(2)A-2503 methyltransferase [Oscillatoria acuminata PCC
6304]
Length = 364
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 174/286 (60%), Gaps = 52/286 (18%)
Query: 62 QEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVG 121
Q A + +GR I A+DGT+K L++L D ++IE VGIP E RLT CVSSQVG
Sbjct: 82 QVADYPLGRSTISHKSIASDGTIKYLLQLTDGQIIEAVGIPTEK-----RLTVCVSSQVG 136
Query: 122 CPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEA 181
CP+ C FCATGKGGF+RNL +HEIV QVL ++E F RV+++VFMGMGEP+LN ++VL A
Sbjct: 137 CPMGCDFCATGKGGFTRNLETHEIVDQVLTVQEDFGRRVSHIVFMGMGEPLLNTENVLAA 196
Query: 182 HRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------SAG-- 225
R +N+D+ IGQR ITISTVG+ + I +LA ++ Q TLA+ +AG
Sbjct: 197 VRSINEDIGIGQRCITISTVGIRDRIPQLAKHRGQFTLAVSLHASNQKLREQLIPNAGGY 256
Query: 226 -----------------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
ND+ ++A ELA LL G HVNLIP+NP
Sbjct: 257 PIEKIIADCREYVKISGRRVTFEYILLAEFNDRTQNAEELASLLR--GFQSHVNLIPYNP 314
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
IE D++RP ++ V AF ALE I S+R +RGL+A AACGQLR
Sbjct: 315 IEEVDFKRPDRQRVQAFVEALEKRHIAVSVRYSRGLEADAACGQLR 360
>gi|416380906|ref|ZP_11684154.1| Ribosomal RNA large subunit methyltransferase N [Crocosphaera
watsonii WH 0003]
gi|357265606|gb|EHJ14349.1| Ribosomal RNA large subunit methyltransferase N [Crocosphaera
watsonii WH 0003]
Length = 341
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 179/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G ++ P++FR D ++ + +GR I A D T K L+
Sbjct: 29 RGKQLHQWLYQKGV-RSLTEISVFPKAFREDFKD--YPIGRSNINHCTIAPDKTRKYLLS 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKG + RNLSS EIV QV
Sbjct: 86 LADGLIIETVGIPTAK-----RLTVCVSSQVGCPMNCDFCATGKGEYDRNLSSAEIVDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN K V++A + LN+DV IGQR +TISTVG+P I +
Sbjct: 141 LTVQEDFQERVSHVVFMGMGEPLLNTKEVVKAVKILNQDVGIGQRSLTISTVGIPKKILE 200
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ T A I
Sbjct: 201 LAHHQLQVTFAVSLHAANQKLREQLIPSAKFYPLPKLLADCRKYVEITGRRVSFEYILLG 260
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E A+ELA+ L G HVNLIP+NPIE DYQR +++ F LE I
Sbjct: 261 GVNDLPEQAIELAKCLK--GFQSHVNLIPYNPIEEVDYQRSNAESINIFKTILEEKNIAV 318
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 319 SVRYSRGLEANAACGQLR 336
>gi|159904144|ref|YP_001551488.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9211]
gi|205829806|sp|A9BCH2.1|RLMN_PROM4 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|159889320|gb|ABX09534.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9211]
Length = 356
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 180/329 (54%), Gaps = 59/329 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + G K +P+ +R L + G GRL + + A DGT+KLL++
Sbjct: 34 RGRQIHEWLYQKGVRKLEE-ISVLPKLWRTTLSDQGVCTGRLEEVKRLVANDGTIKLLLE 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE VGIP RLT CVSSQVGC + C FCATGKGGF R+L HEIV QV
Sbjct: 93 TSDRESIEAVGIPTNS-----RLTTCVSSQVGCSMGCRFCATGKGGFQRSLEVHEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L+I E F R +++VFMGMGEP+LN++SVLE+ CLN D+ IGQR IT+STVGV NT+ +
Sbjct: 148 LSIREAFDRRPSHIVFMGMGEPLLNIESVLESISCLNNDLGIGQRRITVSTVGVVNTLPQ 207
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA L Q TLA
Sbjct: 208 LAELALAKLGRVQFTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDITGRRISF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I A VND+VEHA ELA+L+ G HVNLI +NPI+ DYQRP + F L+
Sbjct: 268 EYILLATVNDKVEHAEELADLIS--GFQSHVNLIAYNPIDEEDYQRPSLARINRFMTVLQ 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQK 307
S + S+R +RGLD AACGQLR++ +
Sbjct: 326 SRGVAVSLRASRGLDQDAACGQLRHQHTR 354
>gi|434387451|ref|YP_007098062.1| 23S rRNA m2A2503 methyltransferase [Chamaesiphon minutus PCC 6605]
gi|428018441|gb|AFY94535.1| 23S rRNA m2A2503 methyltransferase [Chamaesiphon minutus PCC 6605]
Length = 350
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 181/322 (56%), Gaps = 55/322 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA K+ + +R +++ +GR I A DGT+K L++
Sbjct: 38 RGKQLYQWIYQQGA-KSLADITVFSKQWRETVKDT--PIGRSKIHHRAVATDGTIKYLLE 94
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D ++IE VGIP RLT CVSSQVGC + C+FCATGKGGF R+L HEI+ QV
Sbjct: 95 LQDGQIIEAVGIPTAK-----RLTVCVSSQVGCAMACTFCATGKGGFMRHLQPHEIIDQV 149
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV++VVFMGMGEP+ NL +V++A +CLNKD+ I QR IT+STVG+P I +
Sbjct: 150 LTVQEDFNERVSHVVFMGMGEPLANLNNVVKAVQCLNKDIGISQRSITVSTVGIPGKIHE 209
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ TLA I A
Sbjct: 210 LAEHELQVTLAVSLHAPTQRLRTKLVPTAEHYPIEDLLDECRDYVRITGRRLSVEYILLA 269
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND + A ELA L G HVNLIP+NPIE +D+ RP + + AF LE I
Sbjct: 270 GVNDDPKQAAELASQLR--GFQTHVNLIPYNPIEDADFDRPTPRDIKAFVDVLEQQHIAV 327
Query: 285 SIRQTRGLDASAACGQLRNEFQ 306
S+R ++GL ASAACGQLR Q
Sbjct: 328 SVRYSKGLGASAACGQLRANQQ 349
>gi|67921029|ref|ZP_00514548.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
gi|67857146|gb|EAM52386.1| Conserved hypothetical protein 48 [Crocosphaera watsonii WH 8501]
Length = 341
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 179/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G ++ P++FR D ++ + +GR I A D T K L+
Sbjct: 29 RGKQLHQWLYQKGV-RSLTEISVFPKAFREDFKD--YPIGRSNINHCTIAPDKTRKYLLS 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKG + RNLSS EIV Q+
Sbjct: 86 LADGLIIETVGIPTAK-----RLTVCVSSQVGCPMNCDFCATGKGEYDRNLSSAEIVDQI 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN K V++A + LN+DV IGQR +TISTVG+P I +
Sbjct: 141 LTVQEDFQERVSHVVFMGMGEPLLNTKEVVKAVKILNQDVGIGQRSLTISTVGIPKKILE 200
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ T A I
Sbjct: 201 LAHHQLQVTFAVSLHAANQKLREQLIPSAKFYPLPKLLADCRKYVEITGRRVSFEYILLG 260
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E A+ELA+ L G HVNLIP+NPIE DYQR +++ F LE I
Sbjct: 261 GVNDLPEQAIELAKCLK--GFQSHVNLIPYNPIEEVDYQRSNAESINIFKTILEEKNIAV 318
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 319 SVRYSRGLEANAACGQLR 336
>gi|254421960|ref|ZP_05035678.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
gi|196189449|gb|EDX84413.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7335]
Length = 372
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 129/284 (45%), Positives = 168/284 (59%), Gaps = 52/284 (18%)
Query: 64 AGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCP 123
+G+ VGR I + DGT+K L++L D +IE VGIP + RLT CVSSQ+GCP
Sbjct: 84 SGFPVGRSHIHHRSESPDGTIKYLLRLRDGLIIEAVGIPSDK-----RLTVCVSSQIGCP 138
Query: 124 LRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHR 183
+ C FCATGKGGF+RNL ++EIV QVL ++E F+ RV+N+VFMGMGEP+LN ++V+ A R
Sbjct: 139 MGCDFCATGKGGFTRNLETYEIVDQVLTVQEDFQRRVSNIVFMGMGEPLLNTEAVIGAVR 198
Query: 184 CLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA----------------------- 220
LN+D+ IGQRM+T+STVG+P I++LA ++Q TLA
Sbjct: 199 SLNQDIGIGQRMMTVSTVGIPGHIRRLAEQQMQITLAVSLHASNQALRTRLIPSAKQYPL 258
Query: 221 ----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
I A +ND+ EHA ELA L G HVNLIP+NPI
Sbjct: 259 SALLDECRDYVKMTGRRVTFEYILLADLNDRSEHAAELASELR--GFQSHVNLIPYNPIS 316
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
DYQRP + V F L+ I S+R +RGL+ AACGQLR
Sbjct: 317 EVDYQRPSRARVEGFTQQLKDKGIAVSVRYSRGLEKDAACGQLR 360
>gi|78213579|ref|YP_382358.1| hypothetical protein Syncc9605_2063 [Synechococcus sp. CC9605]
gi|123729671|sp|Q3AHX9.1|RLMN_SYNSC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|78198038|gb|ABB35803.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 351
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 144/333 (43%), Positives = 183/333 (54%), Gaps = 60/333 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RGRQ W + A +++ P+++R L EAG VGRL A D T KLL
Sbjct: 24 PFRGRQLHDW-IYAKGARSLADITVFPKTWRAALVEAGVDVGRLKEVHHSVATDATTKLL 82
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ ED IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV
Sbjct: 83 LSTEDGETIETVGIPTD-----QRLTVCVSSQVGCPMACRFCATGKGGLQRSLQTHEIVD 137
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL++ E R +++VFMGMGEP+LN +VLEA RCLN D+ IGQR IT+STVGVP T+
Sbjct: 138 QVLSVREAMDRRPSHIVFMGMGEPLLNSSAVLEAIRCLNDDLGIGQRRITVSTVGVPKTL 197
Query: 208 KKLASYKLQS------TLA----------------------------------------- 220
+LA +Q TLA
Sbjct: 198 PQLAELAMQRLGRAQFTLAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTGRRV 257
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I G+NDQ EHA ELA+ + G HVNLI +NPIE +++RP + + AF
Sbjct: 258 SFEYILLGGLNDQPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFKRPTPQRIEAFRRV 315
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
LE + S+R +RGLD +AACGQLR + Q +P
Sbjct: 316 LERRGVAVSLRASRGLDQNAACGQLRRQ-QMAP 347
>gi|427716113|ref|YP_007064107.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 7507]
gi|427348549|gb|AFY31273.1| 23S rRNA m(2)A-2503 methyltransferase [Calothrix sp. PCC 7507]
Length = 357
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 141/323 (43%), Positives = 186/323 (57%), Gaps = 56/323 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ P+++R +L A +GR + A DGTVK L++
Sbjct: 45 RGKQLHDWIYNKGV-RSLCDISVFPKNWRAEL--AQVPIGRSTLHYRSVAPDGTVKYLLR 101
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP RLT CVSSQVGCP+ C FCATGKGG+ RNL HEIV QV
Sbjct: 102 LADGQIIETVGIP-----SAKRLTVCVSSQVGCPMGCDFCATGKGGYQRNLDCHEIVDQV 156
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN +VL + R LN+DV IG R +T+STVG+ + I++
Sbjct: 157 LTVQEDFQQRVSHVVFMGMGEPLLNTDNVLASLRSLNQDVGIGARSLTVSTVGIRSRIRQ 216
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA + LQ TLA+ A
Sbjct: 217 LAEHHLQITLAVSLHASNQALRERLIPSARPYPLENLLAECREYVQMTGRRVSFEYVLLA 276
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND +HA+ELA+ H G +HVNLIP+NPI+ DY+RP + AF L+ +I
Sbjct: 277 GVNDLPKHALELAQ--HLRGFQNHVNLIPYNPIKEVDYKRPSSDRIQAFVNVLKQQQIAV 334
Query: 285 SIRQTRGLDASAACGQLR-NEFQ 306
S+R +RGL+A AACGQLR NE Q
Sbjct: 335 SVRYSRGLEADAACGQLRANERQ 357
>gi|170077338|ref|YP_001733976.1| radical SAM protein [Synechococcus sp. PCC 7002]
gi|205829912|sp|B1XQH8.1|RLMN_SYNP2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|169885007|gb|ACA98720.1| radical SAM enzyme, Cfr family [Synechococcus sp. PCC 7002]
Length = 346
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 183/324 (56%), Gaps = 55/324 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G P+++R Q + VGR I TA DGT K L++
Sbjct: 27 RGKQLYNWLYQKGIHDLSE-ITVFPKAWRE--QMGTYPVGRSQIHHQRTAPDGTRKYLLQ 83
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP E RLT CVSSQVGC + C FCATGK GF+R+L +HEI+ QV
Sbjct: 84 LHDGLIIETVGIPTEK-----RLTVCVSSQVGCAMACDFCATGKSGFTRHLQAHEIIDQV 138
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++ F+ RV++VVFMGMGEP+ NL+ VL++ + LN+D+ IGQR +T+STVGVP+ I+
Sbjct: 139 LTVQTDFQQRVSHVVFMGMGEPLANLEQVLKSIQSLNQDIGIGQRSLTVSTVGVPDQIRA 198
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA LQ TLA I A
Sbjct: 199 LAQQNLQITLAVSLHAPNQALRESIIPTAVHYPIEALLDECREYVAITRRRLSFEYILLA 258
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND +HA ELA+ L G HVNLIP+NPI +QRP KK + F L+ HKI
Sbjct: 259 GVNDLPDHAAELAKKLK--GFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAV 316
Query: 285 SIRQTRGLDASAACGQLRNEFQKS 308
S+R ++GL+A AACGQLR+ ++S
Sbjct: 317 SVRYSKGLEADAACGQLRSNLRRS 340
>gi|434400679|ref|YP_007134683.1| 23S rRNA m(2)A-2503 methyltransferase [Stanieria cyanosphaera PCC
7437]
gi|428271776|gb|AFZ37717.1| 23S rRNA m(2)A-2503 methyltransferase [Stanieria cyanosphaera PCC
7437]
Length = 353
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 181/323 (56%), Gaps = 55/323 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ P+ +R + A + +GR I A D T K L++
Sbjct: 39 RGKQLHQWLYQKGA-RSLLEISVFPKQWRESM--ANFPIGRSTIDYRSIAPDRTRKYLLR 95
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D IETVGIP + RLT CVSSQVGCP+ C FCATGKGG++RNL + EIV QV
Sbjct: 96 LQDGLTIETVGIPTDK-----RLTVCVSSQVGCPMACDFCATGKGGYTRNLQASEIVDQV 150
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+NVVFMGMGEP++NL+ V+ LN+DV IGQR +TISTVG+P I++
Sbjct: 151 LTVQEDFGQRVSNVVFMGMGEPLINLEQVVTTVHSLNQDVGIGQRNLTISTVGLPGKIRQ 210
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ T A I A
Sbjct: 211 LAQHQLQVTFAVSLHASNQKLREQLIPSANHYPLEQLLEECREYVTITSRRITFEYILLA 270
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA H G HVNLIP+NPI+ + YQRP ++ + F L+ KI
Sbjct: 271 GVNDLPEHAEELAR--HLRGFQTHVNLIPYNPIQEAHYQRPSQQRITQFTQILKQRKIAV 328
Query: 285 SIRQTRGLDASAACGQLRNEFQK 307
S+R +RGL+A AACGQLR +
Sbjct: 329 SVRYSRGLEADAACGQLRTSLNE 351
>gi|407960522|dbj|BAM53762.1| hypothetical protein BEST7613_4831 [Synechocystis sp. PCC 6803]
Length = 354
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 177/318 (55%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ +P+ +R + + +GR I A D T K L++
Sbjct: 33 RGKQIHQWLYQKGA-RSLTAMTDLPKVWRE--KNVHYPIGRSVIDHCAVAPDHTRKYLLR 89
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGC + C+FCATGKGGF RNL SHEIV QV
Sbjct: 90 LADGLIIETVGIP-----SSKRLTVCVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQV 144
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+NVVFMGMGEP+LNL V++A CLN+ V IGQR +TISTVG+P I++
Sbjct: 145 LTVQEEFHERVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIGQRALTISTVGLPGKIRQ 204
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA LQ T A+ A
Sbjct: 205 LADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTGRRVTFEYVLLA 264
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVNDQ HA ELA+ L G HVNLIP+NPI DYQRP + + FA L H+I
Sbjct: 265 GVNDQPVHAEELAQKLR--GFQTHVNLIPYNPISEVDYQRPTEAQINQFAQVLSDHRIAV 322
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RG+ A AACGQLR
Sbjct: 323 SVRYSRGVQADAACGQLR 340
>gi|352095934|ref|ZP_08956881.1| Ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
WH 8016]
gi|351677290|gb|EHA60439.1| Ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
WH 8016]
Length = 346
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/324 (43%), Positives = 181/324 (55%), Gaps = 59/324 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA + + +P+++R LQ+ G +VGRL AAD T KLL+
Sbjct: 26 RGRQLHDWLYAKGA-RDLQGITVLPKAWRASLQDEGVSVGRLHEQERRVAADATTKLLLG 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
ED +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L+ HEIV QV
Sbjct: 85 TEDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAGHEIVAQV 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L+I E+ + R ++VVFMGMGEP+LN+++VLE+ RC+N D+ IGQR IT+STVGVP+T+ +
Sbjct: 140 LSIREVMERRPSHVVFMGMGEPLLNIEAVLESIRCINDDLGIGQRRITVSTVGVPHTLPR 199
Query: 210 LASYKLQS------TLA------------------------------------------- 220
LA LQ TLA
Sbjct: 200 LADLALQQLGRAQFTLAVSLHAPNQALREELIPTAKTYPYEALLDDCRYYLQKTGRRVSF 259
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I GVND HA ELA+ + G HVNLI +NPIE ++QRP + + F LE
Sbjct: 260 EYILLGGVNDHPHHAAELADRV--GGFQSHVNLIAYNPIEEEEFQRPTAQRIEGFRRVLE 317
Query: 279 SHKITTSIRQTRGLDASAACGQLR 302
+ S+R +RGLD AACGQLR
Sbjct: 318 RRGVAVSLRASRGLDQDAACGQLR 341
>gi|16331844|ref|NP_442572.1| hypothetical protein sll0098 [Synechocystis sp. PCC 6803]
gi|383323587|ref|YP_005384441.1| hypothetical protein SYNGTI_2679 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326756|ref|YP_005387610.1| hypothetical protein SYNPCCP_2678 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492640|ref|YP_005410317.1| hypothetical protein SYNPCCN_2678 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437908|ref|YP_005652633.1| hypothetical protein SYNGTS_2680 [Synechocystis sp. PCC 6803]
gi|451815996|ref|YP_007452448.1| hypothetical protein MYO_127050 [Synechocystis sp. PCC 6803]
gi|3287936|sp|Q55880.1|RLMN_SYNY3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|1208474|dbj|BAA10642.1| sll0098 [Synechocystis sp. PCC 6803]
gi|339274941|dbj|BAK51428.1| hypothetical protein SYNGTS_2680 [Synechocystis sp. PCC 6803]
gi|359272907|dbj|BAL30426.1| hypothetical protein SYNGTI_2679 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359276077|dbj|BAL33595.1| hypothetical protein SYNPCCN_2678 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359279247|dbj|BAL36764.1| hypothetical protein SYNPCCP_2678 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|451781965|gb|AGF52934.1| hypothetical protein MYO_127050 [Synechocystis sp. PCC 6803]
Length = 350
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 177/318 (55%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ +P+ +R + + +GR I A D T K L++
Sbjct: 29 RGKQIHQWLYQKGA-RSLTAMTDLPKVWRE--KNVHYPIGRSVIDHCAVAPDHTRKYLLR 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGC + C+FCATGKGGF RNL SHEIV QV
Sbjct: 86 LADGLIIETVGIP-----SSKRLTVCVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+NVVFMGMGEP+LNL V++A CLN+ V IGQR +TISTVG+P I++
Sbjct: 141 LTVQEEFHERVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIGQRALTISTVGLPGKIRQ 200
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA LQ T A+ A
Sbjct: 201 LADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTGRRVTFEYVLLA 260
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVNDQ HA ELA+ L G HVNLIP+NPI DYQRP + + FA L H+I
Sbjct: 261 GVNDQPVHAEELAQKLR--GFQTHVNLIPYNPISEVDYQRPTEAQINQFAQVLSDHRIAV 318
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RG+ A AACGQLR
Sbjct: 319 SVRYSRGVQADAACGQLR 336
>gi|428772519|ref|YP_007164307.1| 23S rRNA m(2)A-2503 methyltransferase [Cyanobacterium stanieri PCC
7202]
gi|428686798|gb|AFZ46658.1| 23S rRNA m(2)A-2503 methyltransferase [Cyanobacterium stanieri PCC
7202]
Length = 341
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 179/319 (56%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ P+ +R QE +GR I TA DGT K L+K
Sbjct: 26 RGKQLYQWLYQKGA-RSLLDITVFPKQWREQNQEQ--EIGRSHIDYYNTAPDGTRKYLLK 82
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D ++ETVGIP RLT CVSSQVGC + C FCATGK GF+RNL +HEI+ Q+
Sbjct: 83 LKDGLIVETVGIPTAK-----RLTVCVSSQVGCAMACDFCATGKEGFTRNLKAHEIIDQI 137
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+NVVFMGMGEP+LNL V++A + +N+DV IG R +T+STVG+P I
Sbjct: 138 LTVQEDFNQRVSNVVFMGMGEPLLNLPEVVKAIQSINQDVGIGARNLTVSTVGLPRKILD 197
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA +KLQ T A+ A
Sbjct: 198 LAEHKLQITFAVSLHASNQKLRQSLIPSAVHYPLSQLLNDCKEYVNITGRRVTFEYVLLA 257
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA + G HVNLIP+NPI +DYQRP + + F LE KI
Sbjct: 258 GVNDLPEHAHELARQIR--GFQTHVNLIPYNPISEADYQRPSPERIKQFTQILEQQKIAV 315
Query: 285 SIRQTRGLDASAACGQLRN 303
S+R +RGL+A AACGQLR+
Sbjct: 316 SVRYSRGLEADAACGQLRS 334
>gi|81300567|ref|YP_400775.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
elongatus PCC 7942]
gi|123769224|sp|Q31MD1.1|RLMN_SYNE7 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|81169448|gb|ABB57788.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 361
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/300 (45%), Positives = 175/300 (58%), Gaps = 60/300 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P+++R LQ VGR I + GT+K L++L D +IE VGIP D RLT
Sbjct: 61 PKAWRQSLQAV--PVGRSQIVDRSVSPSGTIKYLLRLHDGEIIEAVGIPSGD-----RLT 113
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML 173
CVSSQ+GC + C FCATGKGGF R+L+ HEI+ QVL ++E ++ RV+N+VFMGMGEP+L
Sbjct: 114 VCVSSQLGCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLL 173
Query: 174 NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLA------- 220
NL +VL A RCLN+D+ IGQR IT+STVG+P I++LA K LQ TLA
Sbjct: 174 NLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPN 233
Query: 221 --------------------------------------IRSAGVNDQVEHAVELAELLHE 242
I AG+NDQ E A +LA+LL
Sbjct: 234 QAIRDRLIPSSRHYPITDLLQECRDYVQITGRRVTFEYILLAGLNDQPEQAEQLAQLLR- 292
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP+NPI+ +YQRP K V AFA AL ++ ++R ++GL A AACGQLR
Sbjct: 293 -GFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAACGQLR 351
>gi|186684082|ref|YP_001867278.1| ribosomal RNA large subunit methyltransferase N [Nostoc punctiforme
PCC 73102]
gi|205829792|sp|B2J6D0.1|RLMN_NOSP7 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|186466534|gb|ACC82335.1| radical SAM enzyme, Cfr family [Nostoc punctiforme PCC 73102]
Length = 364
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 169/283 (59%), Gaps = 50/283 (17%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG---PMRLTACVSSQVGCPL 124
+GR + A DGTVK L++L D ++IETVGIP E+G RLT CVS+QVGCP+
Sbjct: 80 IGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQVGCPM 139
Query: 125 RCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRC 184
C FCATGKGG+ RNL+ HEI+ QVL ++E F+ RV+NVVFMG+GEP+LN ++VL A +
Sbjct: 140 ACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENVLAALKS 199
Query: 185 LNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------------------- 222
LN+D+ IGQR +T+STVG+ + I++ A LQ TLA+
Sbjct: 200 LNQDIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVSLHAPNQALREKLIPSARAYPLE 259
Query: 223 -----------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
AGVND EHA+EL++ + G HVNLIP+NPI+
Sbjct: 260 ELLAECREYVEITGRRVTFEYVLLAGVNDLPEHALELSKCMR--GFQSHVNLIPYNPIQE 317
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
DY+RP + + AF L+ S+R +RGL+A AACGQLR
Sbjct: 318 VDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLEADAACGQLR 360
>gi|298490256|ref|YP_003720433.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
gi|298232174|gb|ADI63310.1| radical SAM enzyme, Cfr family ['Nostoc azollae' 0708]
Length = 356
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 180/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ P+S+R + A +GR + A D TVK L+K
Sbjct: 45 RGKQLHDWIYDKGV-RSLGDISVFPKSWREKV--ADVPIGRSSLHYRAVAPDDTVKYLLK 101
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVS+QVGCP+ C FCATGKGG+ RNLS EIV QV
Sbjct: 102 LADGEIIETVGIPSHK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLSRGEIVDQV 156
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+NVVFMG+GEP+LN ++V+ A + LN+DV IGQR +TISTVG+ + I +
Sbjct: 157 LTVQEDFQQRVSNVVFMGLGEPLLNTENVILALKALNEDVGIGQRSLTISTVGIRDRIHQ 216
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ TLA I A
Sbjct: 217 LAQHHLQITLAVSLHAPNQALREQLIPSAKPYPIEDLLNECREYVEITGRRVTFEYILLA 276
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E A+EL++ L G HVNLIP+NPIE DY+RP + + AF L+ IT
Sbjct: 277 GVNDLPEQALELSKRLR--GFQSHVNLIPYNPIEEVDYKRPNRDRIQAFVNVLQQQNITV 334
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 335 SVRYSRGLEADAACGQLR 352
>gi|427709656|ref|YP_007052033.1| 23S rRNA m(2)A-2503 methyltransferase [Nostoc sp. PCC 7107]
gi|427362161|gb|AFY44883.1| 23S rRNA m(2)A-2503 methyltransferase [Nostoc sp. PCC 7107]
Length = 355
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 185/322 (57%), Gaps = 63/322 (19%)
Query: 30 RGRQRAPW----HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85
RG+Q W VR+ A + P+ +R+++ A VGR I A DGTVK
Sbjct: 44 RGKQLHDWIYHQQVRSLADIS-----VFPKQWRSEI--ADIPVGRSTIHLRKVAPDGTVK 96
Query: 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEI 145
L++L D ++IETVGIP + RLT CVS+QVGC + C FCATGKGG+ RNL+ HEI
Sbjct: 97 YLLQLADGQIIETVGIPSD-----RRLTVCVSTQVGCAMACDFCATGKGGYKRNLARHEI 151
Query: 146 VGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN 205
+ QVL ++E F+ RV+NVVFMG+GEP+LN+ +VL + LN+DV IGQRM+T+STVG+ N
Sbjct: 152 IDQVLTVQEDFEERVSNVVFMGLGEPLLNVDNVLGSITSLNQDVGIGQRMLTVSTVGIRN 211
Query: 206 TIKKLASYKLQSTLAIR------------------------------------------- 222
I++ A + LQ TLA+
Sbjct: 212 RIRQFAQHNLQVTLAVSLHAPNQALREKLIPSARFYPLEDLLAECREYVAITGRRVTFEY 271
Query: 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
AGVND ++A+EL++ L G +HVNLIP+NPI+ DYQRP + AF L+
Sbjct: 272 VLLAGVNDLPKNALELSQCLR--GFQNHVNLIPYNPIQEVDYQRPSSDRIQAFVNVLQQQ 329
Query: 281 KITTSIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 330 NTAVSVRYSRGLEADAACGQLR 351
>gi|148240394|ref|YP_001225781.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
WH 7803]
gi|205829913|sp|A5GNG9.1|RLMN_SYNPW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|147848933|emb|CAK24484.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. WH 7803]
Length = 351
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 180/329 (54%), Gaps = 59/329 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA + +P+++R LQ+ G +GRL A D T KLL+
Sbjct: 31 RGRQLHDWLYAKGACDLQD-ITVLPKAWRASLQDKGVIIGRLKEQDRKVAGDATTKLLLG 89
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+D +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV QV
Sbjct: 90 TDDGETLETVGIPTD-----QRLTVCVSSQVGCPMACRFCATGKGGLQRSLYTHEIVAQV 144
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E+ + R ++VVFMGMGEP+LN+++VL+A RCLN D+ IGQR IT+STVGVP T+ +
Sbjct: 145 LSVREVMERRPSHVVFMGMGEPLLNIEAVLDAIRCLNDDLGIGQRRITVSTVGVPRTLPR 204
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 205 LAELAMERLGRAQFTLAVSLHAPNQSLREELIPTAHAYPYDALLDDCRHYLAITGRRVSF 264
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND HA ELA+ + G HVNLI +NPIE ++QRP + + F LE
Sbjct: 265 EYILLGGLNDHPAHAEELADRV--GGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLE 322
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQK 307
S + S+R +RGLD AACGQLR QK
Sbjct: 323 SRGVAVSLRASRGLDQDAACGQLRRSRQK 351
>gi|434406765|ref|YP_007149650.1| 23S rRNA m(2)A-2503 methyltransferase [Cylindrospermum stagnale PCC
7417]
gi|428261020|gb|AFZ26970.1| 23S rRNA m(2)A-2503 methyltransferase [Cylindrospermum stagnale PCC
7417]
Length = 358
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 169/285 (59%), Gaps = 52/285 (18%)
Query: 64 AGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCP 123
A +GR + A DGTVK L++L D ++ETVGIP + RLT CVS+QVGCP
Sbjct: 76 AAVPIGRSTLHYRSVAPDGTVKYLLQLADGLIVETVGIPSDK-----RLTVCVSTQVGCP 130
Query: 124 LRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHR 183
+ C FCATGKGG+ RNL+ EIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL A R
Sbjct: 131 MACDFCATGKGGYKRNLTRSEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAALR 190
Query: 184 CLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------- 222
LN+DV IG R +T+STVG+P+ I++LA ++LQ TLA+
Sbjct: 191 SLNQDVGIGARSLTLSTVGIPSRIRQLAQHQLQVTLAVSLHAPNQALREKLIPSAKPYPL 250
Query: 223 ------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
AGVND EHA++LA+ L G HVNLIP+NPI+
Sbjct: 251 EDLLAECREYVEITGRRVSFEYVLLAGVNDLPEHALQLAKCLR--GFQSHVNLIPYNPIQ 308
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
DY+RP + + AF L+ S+R +RGL+A AACGQLR
Sbjct: 309 EVDYKRPSRDRIDAFVNVLKQQNTAVSVRYSRGLEADAACGQLRT 353
>gi|17227851|ref|NP_484399.1| ribosomal RNA large subunit methyltransferase N [Nostoc sp. PCC
7120]
gi|17129700|dbj|BAB72313.1| all0355 [Nostoc sp. PCC 7120]
Length = 322
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 168/282 (59%), Gaps = 52/282 (18%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+GR I A+DGTVK L++L D ++E VGIP + RLT CVS+QVGCP+ C
Sbjct: 45 IGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTDK-----RLTVCVSTQVGCPMACD 99
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
FCATGKGG+ RNL HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL R LN+
Sbjct: 100 FCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQ 159
Query: 188 DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS------- 223
DV IGQR +T+STVG+ + I +LA + LQ TLA+ RS
Sbjct: 160 DVGIGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLL 219
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVND EHA+EL++ H G +HVNLIP+N I+ DY
Sbjct: 220 AECREYVAITGRRISFEYILLAGVNDLPEHALELSK--HLRGFQNHVNLIPYNSIDEVDY 277
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+RP + AF L+ I S+R +RGL+A AACGQLR +
Sbjct: 278 KRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTK 319
>gi|205829715|sp|Q8YZV0.2|RLMN_NOSS1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
Length = 355
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 168/282 (59%), Gaps = 52/282 (18%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+GR I A+DGTVK L++L D ++E VGIP + RLT CVS+QVGCP+ C
Sbjct: 78 IGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTDK-----RLTVCVSTQVGCPMACD 132
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
FCATGKGG+ RNL HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL R LN+
Sbjct: 133 FCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQ 192
Query: 188 DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS------- 223
DV IGQR +T+STVG+ + I +LA + LQ TLA+ RS
Sbjct: 193 DVGIGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLL 252
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVND EHA+EL++ H G +HVNLIP+N I+ DY
Sbjct: 253 AECREYVAITGRRISFEYILLAGVNDLPEHALELSK--HLRGFQNHVNLIPYNSIDEVDY 310
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+RP + AF L+ I S+R +RGL+A AACGQLR +
Sbjct: 311 KRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTK 352
>gi|113955511|ref|YP_731551.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CC9311]
gi|123132407|sp|Q0I7M1.1|RLMN_SYNS3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|113882862|gb|ABI47820.1| radical SAM enzyme, Cfr family protein [Synechococcus sp. CC9311]
Length = 346
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 180/324 (55%), Gaps = 59/324 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + A + + +P+++R LQ G +VGRL +AD T KLL+
Sbjct: 26 RGRQLHDW-LYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLG 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
ED +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L+ HEIV QV
Sbjct: 85 TEDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAGHEIVAQV 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L+I E+ + R ++VVFMGMGEP+LN+++VLE+ RCLN D+ IGQR IT+STVGVP+T+ +
Sbjct: 140 LSIREVMERRPSHVVFMGMGEPLLNIEAVLESIRCLNDDLGIGQRRITVSTVGVPHTLPR 199
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA L Q TLA
Sbjct: 200 LADLALKQLGRAQFTLAVSLHAPNQALREELIPTAKTYPYDALLDDCRYYLNKTGRRVSF 259
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I GVND HA ELA+ + G HVNLI +NPIE ++QRP + + F LE
Sbjct: 260 EYILLGGVNDHPHHASELADRV--GGFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLE 317
Query: 279 SHKITTSIRQTRGLDASAACGQLR 302
+ S+R +RGLD AACGQLR
Sbjct: 318 RRGVAVSLRASRGLDQDAACGQLR 341
>gi|440681177|ref|YP_007155972.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena cylindrica PCC
7122]
gi|428678296|gb|AFZ57062.1| 23S rRNA m(2)A-2503 methyltransferase [Anabaena cylindrica PCC
7122]
Length = 356
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/318 (42%), Positives = 179/318 (56%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ P+S+R Q A +GR + A D TVK L+K
Sbjct: 45 RGKQLHNWIYDKGV-RSLADISVFPKSWRE--QVADVPIGRSSLHYRSVAPDDTVKYLLK 101
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++ETVGIP + RLT CVS+QVGCP+ C FCATGKGG+ RNLS EIV QV
Sbjct: 102 LADGEIVETVGIPSDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLSCAEIVDQV 156
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+NVVFMGMGEP+LN ++V+ A + +N+DV IG R +T+STVG+ + I++
Sbjct: 157 LTVQEDFQQRVSNVVFMGMGEPLLNTENVISAIKSINQDVGIGARSLTVSTVGIRDRIRQ 216
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + Q TLA I A
Sbjct: 217 LAEHLFQITLAVSLHAPNQALREQLIPSAKPYPIEDLLDECREYVEITGRRVTFEYILLA 276
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA+EL++ L G HVNLIP+NPIE DY+RP + + AF L+
Sbjct: 277 GVNDLPEHALELSKRLR--GFQSHVNLIPYNPIEEVDYKRPNRDRIQAFVNVLQQQNTAV 334
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 335 SVRYSRGLEADAACGQLR 352
>gi|284929286|ref|YP_003421808.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
gi|284809730|gb|ADB95427.1| 23S rRNA m(2)A-2503 methyltransferase [cyanobacterium UCYN-A]
Length = 341
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 186/323 (57%), Gaps = 55/323 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G K+ P+++R ++ A + VGR I + + A D T K L+
Sbjct: 29 RGKQLHQWLYHKGI-KSLEEVSVFPKNWRKEI--ADYPVGRSSINQLIVAPDKTRKYLLN 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D +IETVGIP RLT CVSSQVGCP++C FCATGKG F RNL+ EI+ Q+
Sbjct: 86 LQDGLIIETVGIPTSK-----RLTVCVSSQVGCPMKCDFCATGKGDFKRNLTCAEIIDQI 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+K +++A + +N+D+ IGQR +TISTVG+P I +
Sbjct: 141 LTVQEDFQQRVSHVVFMGMGEPLLNIKEIIKAIKIINQDIGIGQRSLTISTVGIPEKIIE 200
Query: 210 LASYKLQSTLAIRSAG-------------------------------------------- 225
A++KLQ T A+
Sbjct: 201 FANHKLQITFAVSLHASNQILREKLIPTSKFYTLSSLINDCKKYVEITKRRLTFEYILLE 260
Query: 226 -VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
VND +E AVELA+LL G +HVNLIP+NPIE Y+R + + AF LE + ITT
Sbjct: 261 EVNDSLEQAVELAKLLK--GFQNHVNLIPYNPIEEVKYKRSSPQRIKAFCYQLEKYGITT 318
Query: 285 SIRQTRGLDASAACGQLRNEFQK 307
SIR +RGL+ AACGQLR + K
Sbjct: 319 SIRYSRGLETHAACGQLRASYHK 341
>gi|116073729|ref|ZP_01470991.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
gi|116069034|gb|EAU74786.1| hypothetical protein RS9916_34802 [Synechococcus sp. RS9916]
Length = 346
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 177/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA + +P+ +R LQE G VGRL A+D T KLL+
Sbjct: 26 RGRQLHDWLYAKGA-RDLNGITVLPKVWRAALQEQGVVVGRLQEQLRSVASDATTKLLLG 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
ED IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L++HEIV QV
Sbjct: 85 TEDAETIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLATHEIVDQV 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L+I E+ R ++VVFMGMGEP+LN+ +VLEA RC N D+ IGQR IT+STVGVP T+ K
Sbjct: 140 LSIREVMDRRPSHVVFMGMGEPLLNIDAVLEAIRCFNDDLGIGQRRITVSTVGVPRTLPK 199
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 200 LAELAMERLGRAQFTLAVSLHAPNQQLREELIPTAHAYPFEALLDDCRHYLAITGRRVSF 259
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND HA ELA+ + G HVNLI +NPIE ++QRP + + F LE
Sbjct: 260 EYILLGGLNDHPAHAEELADRV--GGFQSHVNLIAYNPIEEEEFQRPSAERIAGFRRVLE 317
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ S+R +RGLD +AACGQLR +
Sbjct: 318 RRGVAVSLRASRGLDQNAACGQLRRQ 343
>gi|56752343|ref|YP_173044.1| ribosomal RNA large subunit methyltransferase N [Synechococcus
elongatus PCC 6301]
gi|81561318|sp|Q5MZJ6.1|RLMN_SYNP6 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|56687302|dbj|BAD80524.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 351
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 174/300 (58%), Gaps = 60/300 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P+++R LQ VGR I + G++K L++L D +IE VGIP D RLT
Sbjct: 51 PKAWRQSLQAV--PVGRSQIVDRSVSPSGSIKYLLRLHDGEIIEAVGIPSGD-----RLT 103
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML 173
CVSSQ+GC + C FCATGKGGF R+L+ HEI+ QVL ++E ++ RV+N+VFMGMGEP+L
Sbjct: 104 VCVSSQLGCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLL 163
Query: 174 NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLA------- 220
NL +VL A RCLN+D+ IGQR IT+STVG+P I++LA K LQ TLA
Sbjct: 164 NLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPN 223
Query: 221 --------------------------------------IRSAGVNDQVEHAVELAELLHE 242
I AG+NDQ E A +LA+LL
Sbjct: 224 QAIRDRLIPSSRHYPITDLLQECRDYVQITGRRVTFEYILLAGLNDQPEQAEQLAQLLR- 282
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP NPI+ +YQRP K V AFA AL ++ ++R ++GL A AACGQLR
Sbjct: 283 -GFQSHVNLIPCNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAACGQLR 341
>gi|427714563|ref|YP_007063187.1| 23S rRNA m(2)A-2503 methyltransferase [Synechococcus sp. PCC 6312]
gi|427378692|gb|AFY62644.1| 23S rRNA m(2)A-2503 methyltransferase [Synechococcus sp. PCC 6312]
Length = 345
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/321 (45%), Positives = 182/321 (56%), Gaps = 55/321 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G + PQ +RN L+ VGR I + DGTVK L+K
Sbjct: 33 RGQQLHQWLYQKGI-HSLTEVTVFPQQWRNSLESVA--VGRSQIQARHPSPDGTVKYLLK 89
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVS+QVGCP+ C FCATGKGGF+RNL+ HEIV QV
Sbjct: 90 LADGLVIETVGIPTAK-----RLTVCVSAQVGCPMACDFCATGKGGFTRNLARHEIVDQV 144
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++ F RV++VV MGMGEP+LNL++VLEA +CLN+DV IGQR ITISTVGVP IK+
Sbjct: 145 LTVQADFGERVSHVVLMGMGEPLLNLEAVLEAVQCLNQDVGIGQRNITISTVGVPGQIKR 204
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LAS+ LQ TLA+ A
Sbjct: 205 LASFSLQVTLAVSLHAPDQALRLELIPSAKHYPLNSLIQDCRDYVQKTGRRVSFEYTVLA 264
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND A+ LA+LL G HVNLIP+NPI+ + Y+RP + F L +
Sbjct: 265 GVNDSPAQALALAQLLK--GFQSHVNLIPYNPIQDASYRRPSPHQLQTFLNILHQAGLAA 322
Query: 285 SIRQTRGLDASAACGQLRNEF 305
SIR++RGL+ AACGQLR ++
Sbjct: 323 SIRRSRGLERDAACGQLRGQY 343
>gi|260436262|ref|ZP_05790232.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
gi|260414136|gb|EEX07432.1| radical SAM enzyme, Cfr family [Synechococcus sp. WH 8109]
Length = 352
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 180/333 (54%), Gaps = 60/333 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RGRQ W + A +++ P+++R L E G VGRL A D T KLL
Sbjct: 24 PFRGRQLHDW-IYAKGARSLADITVFPKTWRAALLEGGIDVGRLKEVHRSVATDATTKLL 82
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ ED IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV
Sbjct: 83 LSTEDGETIETVGIPTD-----QRLTVCVSSQVGCPMACRFCATGKGGLQRSLQTHEIVD 137
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL++ E R +++VFMGMGEP+LN +VLEA RCLN D+ IGQR IT+STVGVP T+
Sbjct: 138 QVLSVREAMDRRPSHIVFMGMGEPLLNSSAVLEAIRCLNDDLGIGQRRITVSTVGVPKTL 197
Query: 208 KKLASYKLQS------TLA----------------------------------------- 220
+LA +Q TLA
Sbjct: 198 PQLAELAMQRLGRAQFTLAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTGRRV 257
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I +NDQ EHA ELA+ + G HVNLI +NPIE +++RP + + F
Sbjct: 258 SFEYILLGELNDQPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFKRPTPQRIEVFRRV 315
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
LE + S+R +RGLD +AACGQLR + Q +P
Sbjct: 316 LERRGVAVSLRASRGLDQNAACGQLRRQ-QMAP 347
>gi|427735092|ref|YP_007054636.1| 23S rRNA m(2)A-2503 methyltransferase [Rivularia sp. PCC 7116]
gi|427370133|gb|AFY54089.1| 23S rRNA m(2)A-2503 methyltransferase [Rivularia sp. PCC 7116]
Length = 373
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 167/292 (57%), Gaps = 59/292 (20%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPV------------EDEKGPMRLTAC 115
+GR + + TA DGTVK L++L D +IETVG+P ++ RLT C
Sbjct: 80 IGRSQLRHSSTAPDGTVKYLLELADGEIIETVGMPTFKRWGKSRNRQADNPDALERLTVC 139
Query: 116 VSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNL 175
VS+QVGCP+ C FCATGKGG+ RNL+ EIV QVL ++E F RV+++V MGMGEP+LN+
Sbjct: 140 VSTQVGCPMACDFCATGKGGYQRNLTRSEIVDQVLTVQEDFGQRVSHIVLMGMGEPLLNV 199
Query: 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA--------------- 220
+ L A +CLNKDV IGQR +T+STVG+P I+ LA Y+LQ TLA
Sbjct: 200 DNTLGAIQCLNKDVGIGQRNLTLSTVGIPGRIRHLAKYRLQVTLAVSLHAPNQELREEII 259
Query: 221 ------------------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVN 250
I AGVND EHA +L+ L G HVN
Sbjct: 260 PSARKFPIEELFAECRDYVEMTGRRVSFEYILLAGVNDLPEHAHQLSRQLR--GFQCHVN 317
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
LIP+NPI+ DY+RP + + AF ALE H S+R +RGL+ AACGQLR
Sbjct: 318 LIPYNPIQEVDYKRPNSERIQAFVYALEKHHTAHSVRYSRGLETDAACGQLR 369
>gi|428218596|ref|YP_007103061.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena sp. PCC 7367]
gi|427990378|gb|AFY70633.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena sp. PCC 7367]
Length = 354
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 183/323 (56%), Gaps = 55/323 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + P+++R ++ E VGR I V D T+KLL++
Sbjct: 34 RGKQLHNWLYHKGIHNLQE-ITVFPKTWRQEMAET--VVGRSQIHHQVQTKDKTLKLLLE 90
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++ETVGIP RLT CVSSQVGCP+ C FCATGKGG+ RNL HEIV QV
Sbjct: 91 LSDGAIVETVGIPTSK-----RLTVCVSSQVGCPMGCHFCATGKGGYDRNLEIHEIVDQV 145
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E + RV+++VFMGMGEP+LN+++++ A + LN+D+ IGQR IT+STVGV + I +
Sbjct: 146 LTVQEQMERRVSHLVFMGMGEPLLNVENLVGAIKLLNQDIGIGQRNITVSTVGVRDRIPQ 205
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA + LQ+TLA+ A
Sbjct: 206 LAQHHLQATLAVSLHAPTQELRHELIPSAQTYPIEDLLADCRDYVEITGRRISFEYTLLA 265
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND + A +LA+L+ G HVNLIP+NPI +D++RP +AV F L S +
Sbjct: 266 GVNDSPQQAQQLAKLIR--GFQSHVNLIPYNPIADADFKRPRPEAVQTFLDMLISMNVAA 323
Query: 285 SIRQTRGLDASAACGQLRNEFQK 307
S+R TRG++A AACGQLR +K
Sbjct: 324 SVRHTRGIEADAACGQLRGTHEK 346
>gi|414076298|ref|YP_006995616.1| Fe-S-cluster redox protein [Anabaena sp. 90]
gi|413969714|gb|AFW93803.1| putative Fe-S-cluster redox protein [Anabaena sp. 90]
Length = 356
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 183/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + + ++ P+++R LQ A +GR + A D TVK L+K
Sbjct: 45 RGKQLHDW-IYNKSVRSLADISVFPKNWR--LQVADVPIGRSSLHYRSVAPDDTVKYLLK 101
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++ETVGIP + RLT CVS+QVGCP+ C FCATGKGG+ RNL+ EIV QV
Sbjct: 102 LTDGEIVETVGIPSDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLTRAEIVDQV 156
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+NVVFMGMGEP+LN ++VL A + +N+D+ IG R IT+STVG+ + I +
Sbjct: 157 LTVQEDFQERVSNVVFMGMGEPLLNTENVLLAIKSINQDLGIGARFITLSTVGIRDRILE 216
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
+A ++LQ TLA+ A
Sbjct: 217 VAQHQLQITLAVSLHAPNQALREQLIPSAKPYPIEDLLAECREYVEITGRRVSFEYVLLA 276
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA+EL++ L G HVNLIP+NPI+ DY+RP ++ + AF L+
Sbjct: 277 GVNDLPEHALELSKRLR--GFQSHVNLIPYNPIQEVDYKRPTRERIEAFVNVLQQQNTAV 334
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A AACGQLR
Sbjct: 335 SVRYSRGLEADAACGQLR 352
>gi|116071168|ref|ZP_01468437.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
gi|116066573|gb|EAU72330.1| hypothetical protein BL107_16020 [Synechococcus sp. BL107]
Length = 348
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 178/329 (54%), Gaps = 59/329 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W G K+ +P+ +R +L++ + VGRL + AAD T KLL+
Sbjct: 26 RGRQIHDWLYNKGV-KSLSEITALPKQWRTELEDQTFRVGRLKLVHQSVAADATTKLLLA 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+D IETVGIP + RLT C+SSQVGCP+ C FCATGK G R+L++HEIV QV
Sbjct: 85 TDDGETIETVGIPTD-----QRLTVCISSQVGCPMACRFCATGKSGLQRSLATHEIVDQV 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E R +++VFMGMGEP+LN +VLE RCLN D+ IGQR IT+STVGVP T+ +
Sbjct: 140 LSVREAMDRRPSHIVFMGMGEPLLNSAAVLETIRCLNTDLGIGQRRITVSTVGVPKTLPQ 199
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 200 LAELAMEKLGRAQFTLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGRRVSF 259
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +ND EHA ELA+ + G HVNLI +NPIE +++RP + + AF LE
Sbjct: 260 EYILLGELNDHPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFKRPTTQRIEAFRRVLE 317
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQK 307
I S+R +RGLD +AACGQLR + K
Sbjct: 318 RRGIAVSLRASRGLDQNAACGQLRRQHLK 346
>gi|78184186|ref|YP_376621.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CC9902]
gi|123743556|sp|Q3AZA0.1|RLMN_SYNS9 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|78168480|gb|ABB25577.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 351
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 177/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W G K+ +P+ +R +L+ + VGRL + AAD T KLL+
Sbjct: 26 RGRQIHDWLYNKGV-KSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLA 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+D IETVGIP + RLT C+SSQVGCP+ C FCATGK G R+L++HEIV QV
Sbjct: 85 TDDGETIETVGIPTD-----QRLTVCISSQVGCPMACRFCATGKSGLQRSLATHEIVDQV 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E R ++VVFMGMGEP+LN ++VLE RCLN D+ IGQR IT+STVGVP T+ +
Sbjct: 140 LSVREAMDRRPSHVVFMGMGEPLLNSEAVLETIRCLNTDLGIGQRRITVSTVGVPKTLPQ 199
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 200 LAELAMEKLGRAQFTLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGRRVSF 259
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +ND EHA ELA+ + G HVNLI +NPIE +++RP + + AF LE
Sbjct: 260 EYILLGELNDHPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLE 317
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ S+R +RGLD +AACGQLR +
Sbjct: 318 RRGVAVSLRASRGLDQNAACGQLRRQ 343
>gi|317968945|ref|ZP_07970335.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CB0205]
Length = 365
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 143/336 (42%), Positives = 180/336 (53%), Gaps = 66/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEA------GWTVGRLPIFRTVTAADGT 83
RGRQ W GA ++ + +P++FR +L W +GR A+DGT
Sbjct: 35 RGRQLHDWLYAKGA-RSLDQVSVLPKAFREELAAQPPAAAFDW-MGRSRELHRSIASDGT 92
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
KLL+ D IETVGIP E RLT CVSSQVGCP+ C FCATGKGG R+L+ H
Sbjct: 93 TKLLLGTHDQLSIETVGIPAEG-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAVH 147
Query: 144 EIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV 203
EIV QVL++ E+ R ++VVFMGMGEP+LN++SVL A CL D+ + QR IT+STVGV
Sbjct: 148 EIVDQVLSVREVMDQRPSHVVFMGMGEPLLNVESVLSAIDCLCTDLGMAQRQITVSTVGV 207
Query: 204 PNTIKKLASYKL------QSTLA------------------------------------- 220
P T+ +LA L Q TLA
Sbjct: 208 PRTLPRLAELALERLGRAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVEIT 267
Query: 221 --------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
I G+NDQ HA LA+LL G HVNLIP+NPI+ ++QRP +AV A
Sbjct: 268 GRRVSFEYILLGGLNDQPRHAAALAQLLR--GFQSHVNLIPYNPIQEEEFQRPTPQAVEA 325
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
F AL + S+R +RGLDA AACGQLR + S
Sbjct: 326 FRRALMDRHVAVSVRASRGLDADAACGQLRRRLEGS 361
>gi|145347191|ref|XP_001418058.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578286|gb|ABO96351.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 369
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 178/313 (56%), Gaps = 52/313 (16%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIP-----VEDEK 107
+P+ R+ L G+ GRL + + GT K+ +++ + +IE VGIP +
Sbjct: 58 IPREMRDALVAGGYRTGRLAVESASVSGCGTGKVSLRVGEREVIEAVGIPDASCWRASAE 117
Query: 108 GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG 167
RLTACVSSQVGC ++C+FCATG G+ RNL+ EI QV+ +EE++ RV+ VVFMG
Sbjct: 118 AENRLTACVSSQVGCAMKCTFCATGMQGYKRNLTPAEITAQVIELEELYGKRVSQVVFMG 177
Query: 168 MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----- 222
MGEPMLN+KSV++A RCLN+DV IG R IT+STVG+PN++KKLA KL TLAI
Sbjct: 178 MGEPMLNIKSVVQAIRCLNEDVGIGGRHITVSTVGIPNSLKKLAKEKLAITLAISLHAPD 237
Query: 223 ----------------------------------------SAGVNDQVEHAVELAELL-H 241
AGVND A L+ +L
Sbjct: 238 QHTRAKIVPSAKYYPMEDLLNDARAYFKETGRRVTFEYTLLAGVNDSPSQAKALSRMLKR 297
Query: 242 EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++G G HVN+IP+N I+G ++ RP A+ F LE +T +IR+TRGLD +AACG L
Sbjct: 298 KFGTGAHVNIIPWNNIDGINHTRPSGNAIHRFCAQLEG-GVTHTIRRTRGLDTNAACGML 356
Query: 302 RNEFQKSPLRIDS 314
F++ LR ++
Sbjct: 357 TGAFERRTLRANA 369
>gi|318042314|ref|ZP_07974270.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
CB0101]
Length = 356
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 142/336 (42%), Positives = 177/336 (52%), Gaps = 66/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEA------GWTVGRLPIFRTVTAADGT 83
RGRQ W GA + +P+ FR L W +GR A DGT
Sbjct: 26 RGRQLHDWLYAKGARQLAD-VSVLPKGFREQLAAQPPDGAFDW-MGRSRELHRSVARDGT 83
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
KLL+ D IETVGIP E RLT CVSSQVGCP+ C FCATGKGG R+L+ H
Sbjct: 84 TKLLLGTHDGLSIETVGIPAEG-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAVH 138
Query: 144 EIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV 203
EIV QVL++ E+ + R ++VVFMGMGEP+LN+++VL+A +CL D+ + QR IT+STVGV
Sbjct: 139 EIVDQVLSVREVMEQRPSHVVFMGMGEPLLNIEAVLDAIQCLCTDLGMAQRQITVSTVGV 198
Query: 204 PNTIKKLASYKL------QSTLA------------------------------------- 220
P T+ +LA L Q TLA
Sbjct: 199 PRTLPRLAELALERLGRAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLEDCRRYVAIT 258
Query: 221 --------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
I G+NDQ HA LA+LL G HVNLIP+NPIE ++QRP AV
Sbjct: 259 GRRVSFEYILLGGLNDQPRHAAALAQLLR--GFQSHVNLIPYNPIEEEEFQRPTPAAVDG 316
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
F AL+ + S+R +RGLDA AACGQLR + S
Sbjct: 317 FRRALQDRHVAVSVRASRGLDADAACGQLRRRLEGS 352
>gi|124022151|ref|YP_001016458.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9303]
gi|205829805|sp|A2C6T3.1|RLMN_PROM3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123962437|gb|ABM77193.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9303]
Length = 356
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 179/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA ++ +P+S+R LQ+ G T+GRL A D T KLL+
Sbjct: 34 RGRQLHDWLYAKGA-RSFDAITVLPKSWRISLQQRGLTIGRLLEVNRAVAVDDTTKLLLA 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE+VGIP + RLT C+SSQVGCP+ C FCA+GKGG R+L++HEIV QV
Sbjct: 93 TVDGETIESVGIPTQQ-----RLTVCLSSQVGCPMACRFCASGKGGLQRSLATHEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E R ++VVFMGMGEP+LN+++VL + RCLN D+ I QR IT+STVGVP+T+ +
Sbjct: 148 LSLREAMDRRPSHVVFMGMGEPLLNIEAVLASIRCLNIDLGIAQRRITVSTVGVPHTLPQ 207
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 208 LAELAMKRLGRAQFTLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGRRVTF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +NDQ +HA ELAE + G HVNLI +NPI+ +QRP + + AF LE
Sbjct: 268 EYILLGALNDQPQHAEELAERVR--GFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ S+R +RGLD +AACGQLR +
Sbjct: 326 QRGVAVSLRASRGLDQNAACGQLRRQ 351
>gi|33863770|ref|NP_895330.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9313]
gi|81577096|sp|Q7V5P5.1|RLMN_PROMM RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|33635353|emb|CAE21678.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 356
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 178/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA ++ +P+S+R LQ+ G T+GRL A D T KLL+
Sbjct: 34 RGRQLHEWLYAKGA-RSFEAITVLPKSWRLSLQQRGITIGRLLEVNRAVAVDDTTKLLLA 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE+VGIP + RLT C+SSQVGCP+ C FCA+GKGG R+L++HEIV QV
Sbjct: 93 TVDGETIESVGIPTQQ-----RLTVCLSSQVGCPMACRFCASGKGGLQRSLATHEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E R ++VVFMGMGEP+LN+++VL A RCLN D+ I QR IT+STVGVP+T+
Sbjct: 148 LSLREAMDRRPSHVVFMGMGEPLLNIEAVLAAIRCLNIDLGIAQRRITVSTVGVPHTLPH 207
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 208 LAELAMKRLGRAQFTLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGRRVTF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +NDQ +HA ELA+ + G HVNLI +NPI+ +QRP + + AF LE
Sbjct: 268 EYILLGALNDQPQHAEELADRVR--GFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ S+R +RGLD +AACGQLR +
Sbjct: 326 QRGVAVSLRASRGLDQNAACGQLRRQ 351
>gi|72382850|ref|YP_292205.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. NATL2A]
gi|123746249|sp|Q46J26.1|RLMN_PROMT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|72002700|gb|AAZ58502.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
NATL2A]
Length = 359
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 177/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + GA K+ +P+ +R+ L G +GRL V A D T+KLL+
Sbjct: 34 RGRQIHEWIYQRGA-KSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EIV QV
Sbjct: 93 TFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
+++ E R T+VVFMGMGEP+LN+++VL++ CL D+ IGQR IT+STVG+PNT+
Sbjct: 148 ISVRETMNRRPTHVVFMGMGEPLLNIRNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSD 207
Query: 210 LA----------------------------------SYKLQSTLA--------------- 220
LA SY + S L
Sbjct: 208 LAKLAQDRLGRVKFTLAVSLHAPNQTLRELIIPSASSYPINSLLKDCKKYIELTGRRVSF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND+ HA +LA L+ G HVNLI +NPI +++RP + V AF LE
Sbjct: 268 EYILLGGLNDKDIHAEQLANLMR--GFQSHVNLIAYNPIAEENFKRPSQSRVNAFRELLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ + S+R +RG D AACGQLR +
Sbjct: 326 NRGVAVSVRASRGRDKDAACGQLRRQ 351
>gi|124026587|ref|YP_001015702.1| Fe-S-cluster redox protein [Prochlorococcus marinus str. NATL1A]
gi|205829803|sp|A2C4M8.1|RLMN_PROM1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123961655|gb|ABM76438.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
NATL1A]
Length = 359
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 178/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + GA K+ +P+ +R+ L G +GRL V A D T+KLL+
Sbjct: 34 RGRQIHEWIYQRGA-KSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EIV QV
Sbjct: 93 TFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
+++ E R T+VVFMGMGEP+LN+++VL++ CL D+ IGQR IT+STVG+PNT+
Sbjct: 148 ISVRETMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSD 207
Query: 210 LASY------KLQSTLA------------------------------------------- 220
LA ++Q TLA
Sbjct: 208 LAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSASSYPINSLLKDCKKYIDLTGRRVSF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND+ HA +LA L+ G HVNLI +NPI +++RP + V AF LE
Sbjct: 268 EYILLGGLNDKDIHAEQLANLMR--GFQSHVNLIAYNPIAEENFKRPSQSRVNAFRELLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ + S+R +RG D AACGQLR +
Sbjct: 326 NRGVAVSVRASRGRDKDAACGQLRRQ 351
>gi|33241085|ref|NP_876027.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|81663987|sp|Q7VA32.1|RLMN_PROMA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|33238614|gb|AAQ00680.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 348
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 175/325 (53%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + G +P+++RN L + G +VG L A D T+KLL+
Sbjct: 29 RGRQLHQWLYQKGVDNLDD-ITVLPKAWRNSLIQKGISVGGLVEVNRFIAGDRTIKLLLS 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +IETVGIP + RLT CVSSQ+GCP+ C FCATGK G R+L +EIV QV
Sbjct: 88 TGDGEIIETVGIPSGN-----RLTICVSSQIGCPMGCQFCATGKDGLKRSLKVNEIVAQV 142
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
A+++ F +NVVFMGMGEP+LN++ VL + CLNKD+ IGQR IT+STVGV NT+ +
Sbjct: 143 FAVKKAFNRSPSNVVFMGMGEPLLNIEEVLSSICCLNKDLGIGQRRITVSTVGVKNTLPQ 202
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA L Q TLA
Sbjct: 203 LAELALQFLGSVQFTLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLTGRRVSF 262
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +ND +EHA ELA+L+ G HVNLI +NPI+G +QRP + V F L+
Sbjct: 263 EYILLGHLNDHIEHAEELADLV--GGFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQ 320
Query: 279 SHKITTSIRQTRGLDASAACGQLRN 303
I S+R +RGLD +AACGQLR+
Sbjct: 321 KRGIVVSLRASRGLDKNAACGQLRS 345
>gi|308798845|ref|XP_003074202.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
gi|116000374|emb|CAL50054.1| radical SAM domain-containing protein-like (ISS) [Ostreococcus
tauri]
Length = 406
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 172/328 (52%), Gaps = 82/328 (25%)
Query: 30 RGRQRAPWHVRAGASKTRRRPR--PVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
RG+Q A A + R + ++ R +L AG VGR + A DGT KLL
Sbjct: 110 RGKQMADHLYAANGTSARSVDEFTTLSKALRAELVAAGVRVGRSSVHHVAAATDGTAKLL 169
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++L+D+R++ET GGF+RNL+ HEIV
Sbjct: 170 LRLDDDRVVET-----------------------------------GGFARNLAPHEIVD 194
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVLA+EE F RVTNVVFMGMGEP+LN+ +VL+AH LNK++ IG R ITISTVGV +I
Sbjct: 195 QVLALEEHFGQRVTNVVFMGMGEPLLNVPNVLKAHEVLNKEIGIGARHITISTVGVRGSI 254
Query: 208 KKLASYKLQSTLAIR--------------------------------------------- 222
+KLA +LQS LA+
Sbjct: 255 EKLAYAQLQSVLAVSLHAPNQELRETIIPSAKVYPMEDLLQDCEQYFIATGRRVTFEYTL 314
Query: 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282
GVNDQ EHA EL LL+ HVNLIP+NP++ +D++RP + V AF LE ++
Sbjct: 315 LGGVNDQPEHAKELGRLLYARNLASHVNLIPYNPVDDADFKRPSRATVYAFRDVLEQERV 374
Query: 283 TTSIRQTRGLDASAACGQLRNEFQKSPL 310
SIRQTRGL+A+AACGQLRN +QK+ +
Sbjct: 375 PASIRQTRGLEAAAACGQLRNAYQKNAM 402
>gi|157414083|ref|YP_001484949.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9215]
gi|205829804|sp|A8G6Y2.1|RLMN_PROM2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|157388658|gb|ABV51363.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9215]
Length = 348
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 177/325 (54%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + K+ + +P FR L++ G+ + L + A DGT+KLL+
Sbjct: 25 RGRQIHNWIYNYRNKKKSIDQIEALPLDFRKKLKDDGFKLSELSVQERNLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 SANDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +NKD QI QR IT+STV VP I
Sbjct: 140 ILFIENEMNRKVTNIVFMGMGEPLLNIDDLLVSIRSINKDFQISQRKITVSTVAVPKMIN 199
Query: 209 KLA--SYKL----QSTLAIR---------------------------------------- 222
KL+ S+++ Q TLAI
Sbjct: 200 KLSAKSFQILGNCQFTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGRRVS 259
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
+GVND++EHA EL+ LL G HVNLI +N I+ ++QR K++ +F L
Sbjct: 260 FEYLMLSGVNDKLEHANELSNLLR--GFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
+ I S+R++RGLD +AACGQLR
Sbjct: 318 SHNGIAVSLRKSRGLDKNAACGQLR 342
>gi|254527128|ref|ZP_05139180.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
9202]
gi|221538552|gb|EEE41005.1| radical SAM enzyme, Cfr family [Prochlorococcus marinus str. MIT
9202]
Length = 348
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 177/325 (54%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + K+ + +P FR L++ G+ + L + A DGT+KLL+
Sbjct: 25 RGRQIHNWIYNYRNKKKSIDQIEVLPLDFRKKLKDDGFKLSELSVQERNLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 SANDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +NKD QI QR IT+STV VP I
Sbjct: 140 ILFIENEMNRKVTNIVFMGMGEPLLNIDDLLVSIRSINKDFQISQRKITVSTVAVPKMIN 199
Query: 209 KLA--SYKL----QSTLAIR---------------------------------------- 222
KL+ S+++ Q TLAI
Sbjct: 200 KLSAKSFQILGNCQFTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGRRVS 259
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
+GVND++EHA EL+ LL G HVNLI +N I+ ++QR K++ +F L
Sbjct: 260 FEYLMLSGVNDKLEHANELSNLLK--GFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSKL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
+ I S+R++RGLD +AACGQLR
Sbjct: 318 SHNGIAVSLRKSRGLDKNAACGQLR 342
>gi|87125371|ref|ZP_01081217.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
gi|86167140|gb|EAQ68401.1| hypothetical protein RS9917_08135 [Synechococcus sp. RS9917]
Length = 350
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 176/324 (54%), Gaps = 59/324 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA +T +P+++R L+ G +GRL AAD T KLL++
Sbjct: 31 RGRQLHDWLYAKGA-ETLAAITVLPKAWRLALEAQGVRIGRLQEQDRRVAADATTKLLLQ 89
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+D LIETVGIP + RLT CVSSQVGCP+ C FCATG+GG R+L++HEIV QV
Sbjct: 90 TDDGELIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGQGGLQRSLATHEIVDQV 144
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ + R ++VVFMGMGEP+LN+ +VL A RCL+ D+ IGQR IT+STVGVP T+ +
Sbjct: 145 LSVRAVMDRRPSHVVFMGMGEPLLNIDAVLGAIRCLHNDLGIGQRRITVSTVGVPRTLPQ 204
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 205 LAELAMARLGRAQFTLAVSLHAPNQALREELIPTAHAYPYDDLLQDCRHYLELTGRRVSF 264
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND HA ELA+ + G HVNLI +NPIE +QRP + + F LE
Sbjct: 265 EYILLGGLNDAPTHAEELADRV--GGFQSHVNLIAYNPIEEGAFQRPSAERINGFRRVLE 322
Query: 279 SHKITTSIRQTRGLDASAACGQLR 302
+ S+R +RGLD AACGQLR
Sbjct: 323 RRGVAVSLRASRGLDQDAACGQLR 346
>gi|427704235|ref|YP_007047457.1| 2-vinyl bacteriochlorophyllide hydratase [Cyanobium gracile PCC
6307]
gi|427347403|gb|AFY30116.1| 23S rRNA m2A2503 methyltransferase [Cyanobium gracile PCC 6307]
Length = 352
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 171/331 (51%), Gaps = 59/331 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA ++ +P+++R L AG +GR + A DGT KLL+
Sbjct: 28 RGRQLHDWIYSRGA-RSLEAITVLPKAWREGLAAAGTGIGRSALLHRSDARDGTTKLLLA 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +ETVGIP D RLT CVSSQVGCP+ C FCATGKGG R+L+ HEIV QV
Sbjct: 87 TADGLSLETVGIPSGD-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAVHEIVDQV 141
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L+I E R ++VVFMGMGEP+LN ++VLEA CL D+ + QR IT+STVGVP T+
Sbjct: 142 LSIREAMDRRPSHVVFMGMGEPLLNTEAVLEAIACLCTDLGMAQRQITVSTVGVPRTLPT 201
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA L Q TLA
Sbjct: 202 LAERALERLGRAQFTLAVSLHAPDQRLREELIPTAQAYPLEALLDDCRHYVAITGRRVSF 261
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I GVND A LA LL G HVNLI +NPI D++RP +AV AF L+
Sbjct: 262 EYILLGGVNDHPRQADALARLLR--GFQSHVNLIAYNPIAEEDFRRPAPEAVEAFRTQLQ 319
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
I S+R +RGLD AACGQLR +P
Sbjct: 320 RRHIAVSVRASRGLDQDAACGQLRRRLMDAP 350
>gi|254431713|ref|ZP_05045416.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
gi|197626166|gb|EDY38725.1| radical SAM enzyme, Cfr family [Cyanobium sp. PCC 7001]
Length = 354
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/334 (42%), Positives = 175/334 (52%), Gaps = 66/334 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL------QEAGWTVGRLPIFRTVTAADGT 83
RGRQ W GA ++ +P+++R L W +GR A DGT
Sbjct: 26 RGRQLHDWLYAKGA-RSLDAVSVLPKAWREQLLAEPPPGATDW-IGRSRELHRSVARDGT 83
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
KLL+ D IETVGIP P RLT CVSSQVGCP+ C FCATGKGG R+L+ H
Sbjct: 84 TKLLLATADGLSIETVGIP-----APGRLTVCVSSQVGCPMACRFCATGKGGLQRSLAVH 138
Query: 144 EIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV 203
EIV QVL++ E+ R ++VVFMGMGEP+LN+++VL A CL D+ + QR IT+STVGV
Sbjct: 139 EIVDQVLSVREVMGERPSHVVFMGMGEPLLNIEAVLAAIDCLCTDLGMAQRQITVSTVGV 198
Query: 204 PNTIKKLASYKL------QSTLA------------------------------------- 220
P T+ LA L Q TLA
Sbjct: 199 PRTLPTLAERALERLGRAQFTLAVSLHAPDQRLREELIPTAHAYPIEALLDDCRRYVAIT 258
Query: 221 --------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
I G+NDQ HA LA L+ G HVNLIP+NPIE ++QRP AV A
Sbjct: 259 GRRVSFEYILLGGLNDQPHHAEALARLIR--GFQSHVNLIPYNPIEEEEFQRPSPAAVEA 316
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
F AL+ ++ S+R +RGLDA AACGQLR Q
Sbjct: 317 FRWALQERRVAVSVRASRGLDADAACGQLRRRHQ 350
>gi|126697010|ref|YP_001091896.1| Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9301]
gi|205829802|sp|A3PEX0.1|RLMN_PROM0 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|126544053|gb|ABO18295.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9301]
Length = 347
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 176/325 (54%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + K + +P FR L++ G+ V L I A DGT+KLL+
Sbjct: 25 RGRQIYNWIYNYRNKKKNIDQIEVLPLDFRKRLKDDGFKVSDLSIHERNLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
EDN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L EI+ Q
Sbjct: 85 STEDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKVSEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N+D++I QR IT+STV VP I
Sbjct: 140 ILFIENEMNRKVTNIVFMGMGEPLLNIDDLLLSIRSINEDLKISQRKITVSTVAVPKMIN 199
Query: 209 KLA--SYKL----QSTLA---------IRSA----------------------------- 224
KL+ S+K+ Q TLA IR
Sbjct: 200 KLSAKSFKILGNCQFTLAVSLHAPNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGRRVS 259
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
GVND++EHA EL+ LL G HVNLI +N I+ ++QR K + +F L
Sbjct: 260 FEYLMLRGVNDKIEHANELSHLLK--GFQCHVNLIQYNQIDEVEFQRACLKDLQSFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
+ I S+R++RGLD +AACGQLR
Sbjct: 318 SHNGIAVSLRKSRGLDKNAACGQLR 342
>gi|123969217|ref|YP_001010075.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. AS9601]
gi|205829808|sp|A2BT57.1|RLMN_PROMS RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123199327|gb|ABM70968.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
AS9601]
Length = 348
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 175/325 (53%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + +K + +P FR L+ G+ V L I A DGT+KLL+
Sbjct: 25 RGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKLKVDGFKVSELVIKERNLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
EDN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 STEDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N D QI QR IT+STV +P I
Sbjct: 140 ILFIEYEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINNDFQISQRKITVSTVAIPKMIS 199
Query: 209 KLA--SYKL----QSTLAIR---------------------------------------- 222
KL+ S+++ Q TLAI
Sbjct: 200 KLSAKSFQILSNCQFTLAISLHASNQKTRETIIPSAKNYEIKNIIEDCKTFVRETGRRVS 259
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
+GVND++EHA EL+ LL G HVNLI +N I+ ++QR K + F L
Sbjct: 260 FEYLMLSGVNDKLEHACELSNLLK--GFQCHVNLIQYNQIDEVEFQRTSLKNLQLFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
++ I S+R++RGLD +AACGQLR
Sbjct: 318 VNNGIAVSLRKSRGLDKNAACGQLR 342
>gi|78779958|ref|YP_398070.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus str. MIT 9312]
gi|123768932|sp|Q318R1.1|RLMN_PROM9 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|78713457|gb|ABB50634.1| 23S rRNA m(2)A-2503 methyltransferase [Prochlorococcus marinus str.
MIT 9312]
Length = 348
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 175/325 (53%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + +K + +P FR L++ G+ V L A DGT+KLL+
Sbjct: 25 RGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKLKDDGFKVSELSFQEKKLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 STNDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N+D QI QR IT+STV VP +
Sbjct: 140 ILFIENEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINEDFQISQRKITVSTVAVPKMMS 199
Query: 209 KLA--SYKL----QSTLAIR---------------------------------------- 222
KL+ S+++ Q TLAI
Sbjct: 200 KLSARSFQILGNCQFTLAISLHASNQKTRETIIPSAKNYEIKNIIEDSKQFVKDTGRRVS 259
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
+GVND++EHA EL+ LL G HVNLI +N I+ +++R K + F L
Sbjct: 260 FEYLMLSGVNDKLEHANELSNLLR--GFQCHVNLIQYNQIDEVEFKRASLKNLQLFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
++ IT S R++RGLD +AACGQLR
Sbjct: 318 SNNGITVSFRKSRGLDKNAACGQLR 342
>gi|123966894|ref|YP_001011975.1| Fe-S-cluster redox protein [Prochlorococcus marinus str. MIT 9515]
gi|205829807|sp|A2BYK7.1|RLMN_PROM5 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123201260|gb|ABM72868.1| Predicted Fe-S-cluster redox enzyme [Prochlorococcus marinus str.
MIT 9515]
Length = 348
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 177/326 (54%), Gaps = 61/326 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + SK+ +P +FRN L++ G+ G L + A DGT+KLL+
Sbjct: 25 RGRQIYSWLYNYKNRSKSIDEINVLPLNFRNQLKKEGFIFGELILKEKYLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN +E VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 NTRDNESVECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N+D + QR IT+STV +PN I+
Sbjct: 140 ILFIENEMNQKVTNIVFMGMGEPLLNIDELLFSIRSINEDFDVSQRRITVSTVAIPNMIR 199
Query: 209 KLASY------KLQSTLAIR--------------SA------------------------ 224
KL+ K Q TLAI SA
Sbjct: 200 KLSEMSFQVLGKCQFTLAISLHASNQKTRETIIPSAKNYHIKYIIDDCREFVKKTGRRVS 259
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGA 276
GVND++EHA EL+ L+ G HVNLI +N IE ++ Q P K A L F
Sbjct: 260 FEYLMLHGVNDKLEHADELSNLIK--GFQCHVNLIQYNQIEEVEFKQTPSKNAQL-FQNR 316
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L ++ I S+R++RG D +AACGQLR
Sbjct: 317 LSNNGINVSLRKSRGSDRNAACGQLR 342
>gi|194693462|gb|ACF80815.1| unknown [Zea mays]
Length = 206
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 137/205 (66%), Gaps = 46/205 (22%)
Query: 166 MGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRS-- 223
MGMGEPM+NLKSVLEAH+C NK+++IGQRM+TISTVGVPNTIK LAS+KLQSTLA+
Sbjct: 1 MGMGEPMMNLKSVLEAHQCFNKELKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSLHA 60
Query: 224 -------------------------------------------AGVNDQVEHAVELAELL 240
AG+ND+ EHA ELAELL
Sbjct: 61 PNQKLRETIVPSAKSYPLGALMDDCKSYFLETGRRVSFEYTLLAGINDEKEHAEELAELL 120
Query: 241 HEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQ 300
G G+HVNLIP+NPIEGS+Y+RPY+K V AF ALE+ KIT S+R+TRGLDA+AACGQ
Sbjct: 121 RMCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAACGQ 180
Query: 301 LRNEFQKSP-LRIDSSNSSSESDIA 324
LRNEFQK+P L I+ S S+ + +A
Sbjct: 181 LRNEFQKNPLLEIEPSPSTERTLVA 205
>gi|87301290|ref|ZP_01084131.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
gi|87284258|gb|EAQ76211.1| hypothetical protein WH5701_15431 [Synechococcus sp. WH 5701]
Length = 362
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 170/327 (51%), Gaps = 58/327 (17%)
Query: 30 RGRQRAPWHVRAGASKTRR---RPRPVPQSFRNDLQEAGW-TVGRLPIFRTVTAADGTVK 85
RGRQ W GA + P+ +S + AG +GR + A+DGT K
Sbjct: 34 RGRQLHDWIYAKGARRLADISVLPKAWRESLTAEADPAGSDALGRSRELQRSVASDGTTK 93
Query: 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEI 145
LL+ D +ETVGIP D RLT CVSSQVGCP+ C FCATGKGG R+L+ HEI
Sbjct: 94 LLLGTADGLSLETVGIPSRD-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAVHEI 148
Query: 146 VGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN 205
V QVL + E+ + R ++VVFMGMGEP+L + SVL A CL D+ + QR IT+STVGVP+
Sbjct: 149 VDQVLCVREVMERRPSHVVFMGMGEPLLTIDSVLGAIHCLCTDLGMAQRQITVSTVGVPS 208
Query: 206 TIKKLASYKL------QSTLAIR----SAGVNDQV---EHAVELAELLHEW--------- 243
T+ LA L Q TLA+ G+ +Q+ HA L LL +
Sbjct: 209 TLPSLAELALERLGRAQFTLAVSLHAPDQGLREQLIPTAHAYPLEALLDDCRRYVEITGR 268
Query: 244 ---------------------------GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
G HVNLIP+NPIE D+QRP + V AF A
Sbjct: 269 RVSFEYILLGGLNDHPRQAAALAALLRGFQSHVNLIPYNPIEEEDFQRPSPERVEAFRRA 328
Query: 277 LESHKITTSIRQTRGLDASAACGQLRN 303
L + S+R +RGLD AACGQLR
Sbjct: 329 LLERHVAVSVRASRGLDEDAACGQLRR 355
>gi|291335247|gb|ADD94867.1| putative Fe S cluster redox protein [uncultured marine bacterium
MedDCM-OCT-S09-C145]
Length = 348
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 170/326 (52%), Gaps = 61/326 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + SK+ +P FR+ L+ + G L + A DGT+KLL+
Sbjct: 25 RGRQIYSWLYNYKNRSKSIDEINVLPLKFRDQLKNEAFLFGELTLNEKYLATDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN +E VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 NTRDNESVECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +V+N+VFMGMGEP+LN+ +L + R +N+D I QR IT+STV +P I
Sbjct: 140 ILFIENQMNQKVSNIVFMGMGEPLLNIDELLLSIRSINEDFDISQRKITVSTVAIPKMIS 199
Query: 209 KLASY------KLQSTLA---------IRSA----------------------------- 224
KL+ K Q TLA IR A
Sbjct: 200 KLSKLSFQVLGKCQFTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRETGRRVS 259
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGA 276
GVND++EHA EL+ L+ G HVNLI +N IE ++ Q P K A L F
Sbjct: 260 FEYLMLHGVNDKLEHADELSNLIK--GFQCHVNLIQYNHIEEVEFKQTPTKNAQL-FQTR 316
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L + I S R++RG D +AACGQLR
Sbjct: 317 LSNSGINVSFRKSRGSDRNAACGQLR 342
>gi|148243053|ref|YP_001228210.1| ribosomal RNA large subunit methyltransferase N [Synechococcus sp.
RCC307]
gi|205829914|sp|A5GVE8.1|RLMN_SYNR3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|147851363|emb|CAK28857.1| Predicted Fe-S-cluster redox enzyme [Synechococcus sp. RCC307]
Length = 346
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 169/330 (51%), Gaps = 62/330 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RGRQ W GA + +P + R Q+ +GR A DGT+KLL
Sbjct: 25 PFRGRQLHDWLYAKGA-RHWHDITVLPAALR---QQEPLPLGRSNELERHLAQDGTLKLL 80
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ +D +ETVGIP D RLT CVSSQVGCP+ C FCATGK G R+L HEIV
Sbjct: 81 LATDDGLSLETVGIPTRD-----RLTVCVSSQVGCPMACRFCATGKEGLQRSLEPHEIVD 135
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL + E+ + R ++VVFMGMGEP+LN VL A CL++D+ + R IT+STVGVPNT+
Sbjct: 136 QVLTVREVMQRRPSHVVFMGMGEPLLNSDHVLTAIDCLSRDLGMAMRQITVSTVGVPNTL 195
Query: 208 KKLASYKL------QSTLA----------------------------------------- 220
+LA L Q TLA
Sbjct: 196 PRLAELALERLGRAQFTLAVSLHAPDQALREELIPTARAYPYEQLLEDCRHYVAISGRRV 255
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I +ND A LAE + G HVNLIP+NPI ++QRP V AFA A
Sbjct: 256 SFEYILLGNLNDSPRQAQALAEQVR--GFQSHVNLIPYNPIAEEEFQRPEPARVDAFAAA 313
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEFQ 306
L+ + S+R +RGLD +AACGQLR + Q
Sbjct: 314 LKQRGVAVSVRASRGLDQNAACGQLRRQRQ 343
>gi|33862037|ref|NP_893598.1| ribosomal RNA large subunit methyltransferase N [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|81575609|sp|Q7V010.1|RLMN_PROMP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|33634255|emb|CAE19940.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 348
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 169/326 (51%), Gaps = 61/326 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + SK+ +P FR+ L+ + G L + A DGT+KLL+
Sbjct: 25 RGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQLKNEAFLFGELTLKEKYLATDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN +E VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L EI+ Q
Sbjct: 85 NTRDNESVECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKVSEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +V+N+VFMGMGEP+LN+ +L + R +N+D I QR IT+STV +P I
Sbjct: 140 ILFIENQMNQKVSNIVFMGMGEPLLNIDELLLSIRSINEDFAISQRKITVSTVAIPKMIS 199
Query: 209 KLASY------KLQSTLA---------IRSA----------------------------- 224
KL+ K Q TLA IR A
Sbjct: 200 KLSELSFQVLGKCQFTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRETGRRVS 259
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGA 276
GVND++EHA EL+ L+ G HVNLI +N IE ++ Q P K A L F
Sbjct: 260 FEYLMLHGVNDKLEHADELSNLIK--GFQCHVNLIQYNHIEEVEFKQTPIKNAQL-FQTR 316
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L + I S R++RG D +AACGQLR
Sbjct: 317 LSNSGINVSFRKSRGSDRNAACGQLR 342
>gi|194476577|ref|YP_002048756.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
gi|171191584|gb|ACB42546.1| hypothetical protein PCC_0094 [Paulinella chromatophora]
Length = 350
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 171/325 (52%), Gaps = 60/325 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W G + +P+S+R L A +GR + ++DGT+KLL++
Sbjct: 32 RGRQIHEWMYLKG-ERDIESITVLPKSWREQLIMANIQLGRSRELQRQISSDGTIKLLLQ 90
Query: 90 -LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
D+ IETVGIP RLT CVSSQ GCP+ C FCATGKGG R+L +HEI+ Q
Sbjct: 91 STSDSETIETVGIPT-----AQRLTVCVSSQAGCPMACQFCATGKGGLQRSLLTHEILDQ 145
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
VL+I + R T++VFMGMGEP+LN+++VLE+ + LN D I QR ITISTVGVP T+
Sbjct: 146 VLSIRRVMDRRPTHIVFMGMGEPLLNIEAVLESIQSLNDDFGISQRRITISTVGVPRTLP 205
Query: 209 KLASYKL------QSTLA------------------------------------------ 220
LA L Q TLA
Sbjct: 206 LLAELALKRLDRAQFTLAVSLHAPNQSLREKLIPSATAYSLDNILEDCRHYLAITGRRVS 265
Query: 221 ---IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
I GVNDQ HA ELA+ + G HVNLI +NPI+ ++RP + F L
Sbjct: 266 FEYILLGGVNDQTFHAEELADRVS--GFQSHVNLIAYNPIDDEVFKRPNIFRIERFLSIL 323
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
+ ++ S+R +RGLD +AACGQLR
Sbjct: 324 KHRGLSVSLRASRGLDKNAACGQLR 348
>gi|435853626|ref|YP_007314945.1| 23S rRNA m2A2503 methyltransferase [Halobacteroides halobius DSM
5150]
gi|433670037|gb|AGB40852.1| 23S rRNA m2A2503 methyltransferase [Halobacteroides halobius DSM
5150]
Length = 343
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 164/297 (55%), Gaps = 54/297 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ ++ RN L + T+G+L + + +ADGT K L +LED + IETV +PV++ R
Sbjct: 50 LSKNLRNKLAKK-TTIGKLELIASQESADGTEKYLFELEDGKKIETVYLPVQEG----RK 104
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+S+QVGC + C+FCATG G SRNL++ EIV Q+L +E I + ++TNVV MGMGEP+
Sbjct: 105 SICISTQVGCAMGCNFCATGLQGLSRNLTTGEIVNQILEVERIKETKITNVVLMGMGEPL 164
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAI--------- 221
N K VL+A +N D + IG R +T+ST G+ I++LA KLQ TLAI
Sbjct: 165 ANYKQVLKALELINHDLGLNIGMRKVTLSTCGLVPEIRRLAEEKLQLTLAISLHAPNNQL 224
Query: 222 RS------------------------------------AGVNDQVEHAVELAELLHEWGR 245
RS AGVND +HA +LA LL + +
Sbjct: 225 RSKMMPVNDRYPIHDLMEACVYYIQQTNRRVTFEYALVAGVNDSRKHAQQLATLLAD--K 282
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
HVNLIP N +E Y P KA+ F L++ I SIR RG D AACGQL+
Sbjct: 283 LVHVNLIPINKVEKLSYSNPSNKAIKQFKEELDNQGIPVSIRTERGADIDAACGQLQ 339
>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
Length = 349
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 167/326 (51%), Gaps = 61/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W R G + R +P R +L+E + + +L I A DGTVK L +
Sbjct: 28 RASQLFNWIYRNGVDEFSRMNN-LPLVLREELEEKSY-LTKLKIVNKSKAEDGTVKYLWE 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D IE+V IP E R + C+SSQVGC L C FCATG G RNL+ EIV QV
Sbjct: 86 LKDGETIESVFIPYEGS----RNSVCISSQVGCSLGCKFCATGLTGLIRNLTPGEIVDQV 141
Query: 150 LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTV 201
L I++ + RV+NVVFMGMGEP+ N+KSVL+A +N K + IG+R IT+ST
Sbjct: 142 LQIQKEISNDKYGSPRVSNVVFMGMGEPLANMKSVLKAIEIMNDSKGLNIGKRKITVSTS 201
Query: 202 GVPNTIKKLASYKLQSTLAIR--------------------------------------- 222
G+ IK+LA KLQ LAI
Sbjct: 202 GLVPQIKELADKKLQIVLAISLNAPNNALRDKLMPINRKFPLEKLLEAVRYYTEVTNRRV 261
Query: 223 ------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
G ND EHA +L LL + HVNLIPFNP++ ++++RP K+ V F
Sbjct: 262 TFEYVLLKGTNDSPEHAFQLVNLLSDI--HGHVNLIPFNPVQETEFKRPSKETVNRFKDI 319
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L ++ + T++RQ RG AACGQLR
Sbjct: 320 LINNGVETTVRQERGTRIEAACGQLR 345
>gi|282895427|ref|ZP_06303564.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
gi|281199460|gb|EFA74323.1| Putative uncharacterized protein [Raphidiopsis brookii D9]
Length = 300
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 150/270 (55%), Gaps = 55/270 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + P+++R + + ++GR + +A DGTVK L+
Sbjct: 41 RGKQLHNWIYHHGVHRISD-ISVFPKTWREQVTDV--SIGRSSVNYQCSATDGTVKYLLN 97
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP + RLT CVS+QVGCP+ C FCATGKGGF RNL+ EIV QV
Sbjct: 98 LADGEIIETVGIPSDK-----RLTVCVSTQVGCPMACDFCATGKGGFKRNLNRGEIVDQV 152
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN ++V+ A +CLN+D+ IGQR +T+STVG+ + I++
Sbjct: 153 LTVQEDFQQRVSHVVFMGMGEPLLNTENVILALKCLNQDLGIGQRSLTVSTVGIRDRIRQ 212
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ TLA I +
Sbjct: 213 LAEHHLQVTLAVSLHAPNQILREQIIPSAKTYPIEQLLAECRQYVEITGRRVTFEYILLS 272
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPF 254
GVND E A+EL++ L G HVNLIP
Sbjct: 273 GVNDLPEQALELSQRLR--GFQSHVNLIPL 300
>gi|161528893|ref|YP_001582719.1| radical SAM protein [Nitrosopumilus maritimus SCM1]
gi|205829829|sp|A9A3L9.1|RLMN_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase
gi|160340194|gb|ABX13281.1| radical SAM enzyme, Cfr family [Nitrosopumilus maritimus SCM1]
Length = 351
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 156/306 (50%), Gaps = 56/306 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK--GP 109
+P+ R + EAG+T+G V + DG T KLL++L D +ETV + E K G
Sbjct: 47 LPKKLREEFTEAGYTIGSAKEIHRVVSDDGDTTKLLLELSDGSSVETVLMQYEPTKIGGH 106
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFM 166
R T CVS+Q+GC + C FCATG+ GF NL + IV QV+ E+ + R VTN+VFM
Sbjct: 107 PRSTICVSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQRGEHVTNLVFM 166
Query: 167 GMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-- 222
GMGEPM N ++ A + L D +GQR ITIST+G+ + I+KLA LQ LAI
Sbjct: 167 GMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGLAISLH 226
Query: 223 -------------------------------------------SAGVNDQVEHAVELAEL 239
GVND E A ELA L
Sbjct: 227 APNNELRKKLVPTAGPNSVEDIIKSGRDYFKKTGRRVTFEYALMEGVNDSPEIAHELARL 286
Query: 240 LHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
L G G HVN+IP NP G D++RP +K VL F L + ++R +G + SAACG
Sbjct: 287 LR--GNGSHVNIIPINPTAG-DFKRPSEKNVLEFEQILRKSGVNCTVRVEKGTEISAACG 343
Query: 300 QLRNEF 305
QLR +
Sbjct: 344 QLRTDI 349
>gi|407465360|ref|YP_006776242.1| radical SAM protein [Candidatus Nitrosopumilus sp. AR2]
gi|407048548|gb|AFS83300.1| radical SAM protein [Candidatus Nitrosopumilus sp. AR2]
Length = 353
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 158/306 (51%), Gaps = 56/306 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK--GP 109
+P+ R +L AG+T+G + + DG T KLL++L ++ +ETV + + K G
Sbjct: 47 LPKKLREELTAAGYTIGSAKEIHRIVSDDGDTTKLLLELSNDNSVETVLMQYDPTKIGGH 106
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFM 166
R T CVS+Q+GC + C FCATG+ GF NL + IV QV+ EI + R VTN+VFM
Sbjct: 107 PRSTVCVSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAEILEKRGEHVTNLVFM 166
Query: 167 GMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-- 222
GMGEPM N ++ A + L D +GQR ITIST+G+ + I++LA LQ LAI
Sbjct: 167 GMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGIRSGIERLAEENLQIGLAISLH 226
Query: 223 -------------------------------------------SAGVNDQVEHAVELAEL 239
AG+ND E A ELA L
Sbjct: 227 APNNELRKKLVPTASPNSVEEIIELGRNYFKKTGRRVTFEYALMAGINDSPEIATELARL 286
Query: 240 LHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
L G G HVNLIP NP G D++RP +K VL F L I ++R +G + SAACG
Sbjct: 287 LK--GNGSHVNLIPINPTAG-DFKRPSEKNVLEFERILSDAGINCTVRIEKGTEISAACG 343
Query: 300 QLRNEF 305
QLR +
Sbjct: 344 QLRTDL 349
>gi|386875874|ref|ZP_10118027.1| radical SAM enzyme, Cfr family [Candidatus Nitrosopumilus salaria
BD31]
gi|386806326|gb|EIJ65792.1| radical SAM enzyme, Cfr family [Candidatus Nitrosopumilus salaria
BD31]
Length = 351
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 158/308 (51%), Gaps = 56/308 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK-- 107
+ +P+ R +L AG+T+G V + DG T KLL+KL ++ +E V + + K
Sbjct: 45 KQLPKQMREELIAAGYTIGSAKEIHQVVSEDGDTTKLLLKLTNDSSVEAVLMQYDPSKIG 104
Query: 108 GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVV 164
G R T CVS+Q+GC + C FCATG+ GF NL + IV QV+ E+ + R VTN+V
Sbjct: 105 GHPRSTICVSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLQKRGEHVTNLV 164
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR 222
FMGMGEPM N ++ A R L D +GQR ITIST+G+ + I+KLA LQ LAI
Sbjct: 165 FMGMGEPMANYDEMIRAVRILTHDRGFGLGQRHITISTIGIRSGIEKLADENLQIGLAIS 224
Query: 223 ---------------------------------------------SAGVNDQVEHAVELA 237
AG+ND E A ELA
Sbjct: 225 LHAPNNELRKKLVPTAIPNSVEDIIESGRYYFKKTGRRVTFEYALMAGINDSPEIAQELA 284
Query: 238 ELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAA 297
LL G G HVNLIP NP G D++RP +K + F L + + ++R +G + SAA
Sbjct: 285 RLLK--GNGSHVNLIPINPTAG-DFKRPTEKNIREFEQILSNAGVNCTVRVEKGTEISAA 341
Query: 298 CGQLRNEF 305
CGQLR +
Sbjct: 342 CGQLRTDI 349
>gi|302392191|ref|YP_003828011.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
gi|302204268|gb|ADL12946.1| 23S rRNA m(2)A-2503 methyltransferase [Acetohalobium arabaticum DSM
5501]
Length = 350
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 164/328 (50%), Gaps = 61/328 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GA + Q R+ LQ + + +L + DGTVK L +
Sbjct: 29 RAEQIFNWIYKQGAVNFEEMTN-LSQGLRSRLQSKAY-IQQLTEITRAKSEDGTVKFLFE 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
LEDN+ IETV +P +D + + CVS+QVGC + C+FCATG+ G RNL++ EIV Q+
Sbjct: 87 LEDNKEIETVFLPYQDGRNSI----CVSTQVGCGMGCNFCATGQQGLERNLTTGEIVSQI 142
Query: 150 LAIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTV 201
L ++++ ++NVVFMGMGEP+ N + L LN K + I R IT+ST
Sbjct: 143 LKVQQLMGSNGYDPSLISNVVFMGMGEPLANYDNFLRVIDILNSEKALNISMRRITVSTC 202
Query: 202 GVPNTIKKLASYKLQSTLAI---------RSA---------------------------- 224
G+ IK+LA +LQ LAI RS
Sbjct: 203 GLVPQIKRLADKELQLVLAISLHAAEDKLRSEMMPINKRYPLEELIAACEYYLQKTNRRI 262
Query: 225 --------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
GVN++ + A +LA+LL G HVNLIP NP++ RP +KA+ F
Sbjct: 263 TFEYALVDGVNNRRQDAEKLAQLLS--GLLCHVNLIPVNPVKELGLTRPNRKAIKEFKEI 320
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNE 304
L+ H I ++RQ RG D AACGQLR E
Sbjct: 321 LDRHNIQATVRQERGNDIEAACGQLRTE 348
>gi|91200995|emb|CAJ74052.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 368
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 169/327 (51%), Gaps = 58/327 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA+ + +P FR L+EA V + I T+ DGT K LI
Sbjct: 30 RGKQILSWMYKKGATDFNQMS-DIPLPFREKLEEA-HNVFQTKIHTINTSQDGTEKFLIH 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L DN LIE V + D K R TACVS+QVGC + CSFCA+G G +RNL + EI+ QV
Sbjct: 88 LPDNNLIECV--LLRDGK---RRTACVSTQVGCAMGCSFCASGVLGLTRNLKTGEIIEQV 142
Query: 150 LAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPN 205
L I+ +TN+VFMG+GEP+ N V+++ R +N D + IG R ITISTVG+
Sbjct: 143 LHIKNHLPANEHITNIVFMGIGEPLANYDKVVKSLRIMNADWGLAIGARNITISTVGLIE 202
Query: 206 TIKKLASYKLQSTLAIR------------------------------------------- 222
I++LA L+ LAI
Sbjct: 203 GIRRLAKEGLKVNLAISLHASNDNTRNKLVPSNSKTGIKNILGAAQEYFNATHRDISFEY 262
Query: 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
G+ND + A LA++L G +VN++P NPI+ ++ P +K V F L++H
Sbjct: 263 TMIDGINDSKQDAKLLAQILK--GVQCNVNILPVNPIKEGNFAPPVQKTVETFCTVLKNH 320
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQK 307
I ++RQ +G++ +AACGQLR + QK
Sbjct: 321 GIVATVRQRKGINVNAACGQLRLQIQK 347
>gi|223038329|ref|ZP_03608623.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
gi|222880186|gb|EEF15273.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
Length = 416
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 178/349 (51%), Gaps = 62/349 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W + A+ +P+ R +L + + L + +ADG++K L
Sbjct: 19 PFRAKQIFEWLYKKNATSFDEMLN-LPKDLRANLVQEFY-FDPLKCVKFEQSADGSIKYL 76
Query: 88 IKLEDNRLIETVGIPVEDEK----GPM----RLTACVSSQVGCPLRCSFCATGKGGFSRN 139
+L+D IE+V +P+++E+ G + R T CVSSQVGC + C+FC T KGG RN
Sbjct: 77 FELKDGLRIESVLLPMKEEQTNEQGKISRHARYTVCVSSQVGCKMGCAFCLTAKGGLVRN 136
Query: 140 LSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQR 194
L++ EIVGQ+L I+ +I R NVV+MGMGEP+ NL SV +A + L N + I R
Sbjct: 137 LTAGEIVGQILWIKRENKIPYERRINVVYMGMGEPLDNLASVSKAVKILTENDGLAISPR 196
Query: 195 MITISTVGVPNTIKKLASYKLQSTLAI---------RS---------------------- 223
T+ST G+ N IKKL L LAI RS
Sbjct: 197 RQTVSTSGLGNQIKKLGEMDLGVLLAISLHAVTDELRSRLMPINKAYNIEAVMDAVRGFP 256
Query: 224 --------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
G+ND + A +L LLH G VNLI FNP EGS+++RP
Sbjct: 257 IDMRKRVMFEYLVIRGLNDSLADAKKLVRLLH--GIRAKVNLIYFNPHEGSEFERPELSD 314
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSS 318
++ F L +H IT +IRQ++GLD SAACGQL+ +K R D +N S
Sbjct: 315 MVKFQDYLCAHGITCTIRQSKGLDISAACGQLKQRSEKINSRQDGTNMS 363
>gi|154250366|ref|YP_001411191.1| ribosomal RNA large subunit methyltransferase N [Fervidobacterium
nodosum Rt17-B1]
gi|205829758|sp|A7HNQ1.1|RLMN_FERNB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|154154302|gb|ABS61534.1| radical SAM enzyme, Cfr family [Fervidobacterium nodosum Rt17-B1]
Length = 348
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 159/303 (52%), Gaps = 57/303 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + RN L E + + ++ D T K L KLED+ IE+V + P R+
Sbjct: 48 LSKEHRNTLSERFYIYVPELLDMQISQIDKTTKFLWKLEDDNTIESVLLF-----HPDRV 102
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TAC+S+QVGCP +C+FCATG+ GF RNLS+ EIV Q++A+E+ K + N+V+MGMGEP+
Sbjct: 103 TACISTQVGCPAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKHRKVNIGNIVYMGMGEPL 162
Query: 173 LNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA---------- 220
LN K V+++ + LN K I R I+ISTVG+P I +LA + LA
Sbjct: 163 LNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISLHAPNNYK 222
Query: 221 ----------------IRSAG-------------------VNDQVEHAVELAELLHEWGR 245
I+SA ND V+ A +LAELL G
Sbjct: 223 RDIIVPMNKKYSVEEIIQSAKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELLK--GM 280
Query: 246 GHHVNLIPFNPIEGS---DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G +VNLIP NP+ S ++RP+ A+ F L+ H I IR+ +G D AACGQLR
Sbjct: 281 GAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVLDKHNIENEIRREKGTDIDAACGQLR 340
Query: 303 NEF 305
+
Sbjct: 341 RRY 343
>gi|416115581|ref|ZP_11594112.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
concisus UNSWCD]
gi|384577747|gb|EIF07024.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
concisus UNSWCD]
Length = 381
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 176/355 (49%), Gaps = 65/355 (18%)
Query: 25 FTCPS-RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
PS R Q W + A++ + +P+ R DL E + + L + ++DG+
Sbjct: 15 LVSPSFRATQIYEWVYKKNATEFSQMLN-LPKDMRQDLAEK-FYLDPLKCVKFEQSSDGS 72
Query: 84 VKLLIKLEDNRLIETVGIP----VEDEKGPM----RLTACVSSQVGCPLRCSFCATGKGG 135
+K L +L+D IE+V +P + DE G + R T CVSSQVGC + C+FC T KGG
Sbjct: 73 IKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTVCVSSQVGCKMGCAFCLTAKGG 132
Query: 136 FSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHR--CLNKDVQ 190
RNL++ EIVGQ+L I+ I R NVV+MGMGEP+ NL +V +A + LN+ +
Sbjct: 133 LVRNLTAGEIVGQILWIKRENNIPYERRINVVYMGMGEPLDNLANVSKAIKILALNEGLA 192
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------ 226
I R T+ST G+ + IKKL L LAI V
Sbjct: 193 ISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPINKAYNIEAVMDAV 252
Query: 227 ---------------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
ND V A +L +LLH G VNLI FNP EGS++ RP
Sbjct: 253 RGFPIDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLH--GIKAKVNLIYFNPYEGSEFGRP 310
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL--RNEFQKSPLRIDSSNSS 318
++L F L H +T +IRQ++GLD SAACGQL RNE K + N++
Sbjct: 311 ELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQLKQRNENPKFKANVSDKNAA 365
>gi|222823067|ref|YP_002574640.1| ribosomal RNA large subunit methyltransferase N [Campylobacter lari
RM2100]
gi|254807160|sp|B9KEA4.1|RLMN_CAMLR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|222538288|gb|ACM63389.1| conserved hypothetical protein, radical SAM enzyme (Cfr family)
[Campylobacter lari RM2100]
Length = 356
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 169/331 (51%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + A + +P+ FR LQ+ + L + + DG++K L +
Sbjct: 24 RAKQIFEWVYKKYADDFLQMS-SLPKDFRVYLQK-NFHFSPLKCVKDEKSKDGSIKYLFE 81
Query: 90 LEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L D + IE V +P++ DE G + R T CVSSQVGC CSFC T KGG SRNLS
Sbjct: 82 LLDGKKIEAVLLPMKEELVDENGKIIKHARYTICVSSQVGCKSGCSFCLTAKGGLSRNLS 141
Query: 142 SHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMI 196
+ EIVGQ+L I++ K R N+V+MGMGEP+ NLK+V +A + L N + I R
Sbjct: 142 AGEIVGQILWIKKHNKIPYERRVNIVYMGMGEPLDNLKNVSKAVKILADNDALAISPRRQ 201
Query: 197 TISTVGVPNTIKKLASYKLQSTLAI---------RSA----------------------- 224
TIST G+ IK+L L LAI RS
Sbjct: 202 TISTSGLAKQIKELGEMNLGVLLAISLHAVNDELRSELMPINKAYNIASIMEAVRNFPID 261
Query: 225 -------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
G+ND++EHA EL +LL+ G VNLI FNP EGS Y RP + +
Sbjct: 262 QRKRVMFEYLLIDGINDKIEHAKELVKLLN--GIKAKVNLILFNPHEGSLYNRPSVENAI 319
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L + +T +IR+++GLD SAACGQL+
Sbjct: 320 KFQDYLSAKGVTCTIRESKGLDISAACGQLK 350
>gi|118475734|ref|YP_892923.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
fetus subsp. fetus 82-40]
gi|261886280|ref|ZP_06010319.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
fetus subsp. venerealis str. Azul-94]
gi|424819924|ref|ZP_18244962.1| Radical SAM protein [Campylobacter fetus subsp. venerealis NCTC
10354]
gi|205829691|sp|A0RRU0.1|RLMN_CAMFF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118414960|gb|ABK83380.1| radical SAM enzyme, Cfr family [Campylobacter fetus subsp. fetus
82-40]
gi|342326703|gb|EGU23187.1| Radical SAM protein [Campylobacter fetus subsp. venerealis NCTC
10354]
Length = 354
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 167/331 (50%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + A ++ + + R +L+ + + + L R+ T+ DG++K L K
Sbjct: 21 RAKQIYEWVYKKNA-RSFDEMTNISKDVRENLK-SEFYLDPLTCVRSETSKDGSIKYLFK 78
Query: 90 LEDNRLIETVGIPVEDE----KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L D + IE+V +P+++E G + R T CVSSQVGC + CSFC T KGGF RNLS
Sbjct: 79 LTDGKTIESVLLPMKEEISSEDGSVERHARYTICVSSQVGCKMGCSFCLTAKGGFVRNLS 138
Query: 142 SHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMI 196
+ EIV Q+L I+ I R NVV+MGMGEP+ NL +V +A L N + IG R
Sbjct: 139 AGEIVAQILWIKRENNIPYERRVNVVYMGMGEPLDNLTNVSKAVSILKDNDGLAIGARRQ 198
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIR---------------------------------- 222
TIST G+ + IKKL L LAI
Sbjct: 199 TISTSGLASQIKKLGELDLGVLLAISLHAVTDELRAKLMPINKAYNIAAVMDAVRAFPID 258
Query: 223 -----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
VND + A L +LLH G VNLI FNP EGS YQRP + V
Sbjct: 259 MRKRVMFEYLIMDKVNDNLSDAKALVKLLH--GIKAKVNLILFNPHEGSQYQRPSIENVD 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L+S +T +IRQ++GLD SAACGQL+
Sbjct: 317 NFRTYLQSRGVTCTIRQSKGLDISAACGQLK 347
>gi|157164532|ref|YP_001467818.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
concisus 13826]
gi|205829689|sp|A7ZGB0.1|RLMN_CAMC1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|112801745|gb|EAT99089.1| radical SAM enzyme, Cfr family [Campylobacter concisus 13826]
Length = 381
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 177/354 (50%), Gaps = 63/354 (17%)
Query: 25 FTCPS-RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
PS R Q W + A++ + +P+ R DL E + + L + ++DG+
Sbjct: 15 LVSPSFRATQIYEWVYKKNATEFSQMLN-LPKDMRQDLAEK-FYLDPLKCVKFEQSSDGS 72
Query: 84 VKLLIKLEDNRLIETVGIP----VEDEKGPM----RLTACVSSQVGCPLRCSFCATGKGG 135
+K L +L+D IE+V +P + DE G + R T CVSSQVGC + C+FC T KGG
Sbjct: 73 IKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTICVSSQVGCKMGCAFCLTAKGG 132
Query: 136 FSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHR--CLNKDVQ 190
RNL++ EIVGQ+L I+ +I R NVV+MGMGEP+ NL +V +A + LN+ +
Sbjct: 133 LVRNLTAGEIVGQILWIKRENKIPYERRINVVYMGMGEPLDNLTNVSKAIKILALNEGLA 192
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------ 226
I R T+ST G+ + IKKL L LAI V
Sbjct: 193 ISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPINKAYNIEAVMDAV 252
Query: 227 ---------------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
ND V A +L +LLH G VNLI FNP EGS++ RP
Sbjct: 253 RGFPIDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLH--GIKAKVNLIYFNPHEGSEFGRP 310
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSS 319
++L F L H +T +IRQ++GLD SAACGQL+ + R + S +S+
Sbjct: 311 ELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQLKQRNENPKFRANVSGNSA 364
>gi|390939244|ref|YP_006402981.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurospirillum barnesii
SES-3]
gi|390192351|gb|AFL67406.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurospirillum barnesii
SES-3]
Length = 358
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 172/337 (51%), Gaps = 62/337 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + + + + +P+ ++ LQ A + + L I + + DG+ K L
Sbjct: 23 RAKQIYQWLYQKYVT-SFEEMKNLPKELKDQLQ-ANYYLDPLTIVKVEESRDGSKKYLFA 80
Query: 90 LEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L+D +E+V +P++ DE+G + R T C+SSQVGC + C+FC TGK GF RNLS
Sbjct: 81 LKDGNTVESVLLPMKQEQSDEEGKLIHHTRYTICISSQVGCKIGCAFCLTGKSGFKRNLS 140
Query: 142 SHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMI 196
+ EI QVL I+ I ++R N+V+MGMGEP+ NL +V +A R N + I R
Sbjct: 141 AGEITTQVLMIKRDNAIAENRRVNIVYMGMGEPLDNLTNVSKAVRMFNDLDGLSISPRRQ 200
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIR---------------------------------- 222
TIST G+ + I+KL L LAI
Sbjct: 201 TISTSGLSSQIEKLGKMDLGVLLAISLHAVDDVLREKLMPINKAYNIESIINAVKAFPID 260
Query: 223 -----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
G+ND A +L +LLH G VNLI FNP GS++ RP +K ++
Sbjct: 261 ARKRVMFEYLVMKGLNDDQRSAKKLVKLLH--GIKAKVNLIYFNPHSGSEFGRPLEKDMI 318
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
AF L H + +IRQ++GLD SAACGQL+++ QK+
Sbjct: 319 AFQQYLVDHGVLCTIRQSKGLDISAACGQLKDKEQKN 355
>gi|395225716|ref|ZP_10404232.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
gi|394446116|gb|EJF06961.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
Length = 355
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 165/315 (52%), Gaps = 61/315 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE----KG 108
+ ++ R +L E +++ + I + + DGT+K L +LED R +ETV I + DE G
Sbjct: 43 ISKALRKELSEK-FSIHTMEIAKKEESLDGTIKYLFRLEDGRTVETVLIKMRDEVFNEDG 101
Query: 109 PM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVT 161
+ R T CVS+QVGC + CSFC+T KGGF R+LS+ EIV QVLAI +EI R
Sbjct: 102 DILQQARYTICVSTQVGCKVGCSFCSTAKGGFVRDLSTAEIVEQVLAIKREQEIEYSRKG 161
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
NVV+MGMGEP+ N S++ A L + + I R T+ST G+ I KL S L +
Sbjct: 162 NVVYMGMGEPLDNFTSLVNAIAILKDENGLSISPRRQTVSTSGISTKIDKLGSLDLGVHI 221
Query: 220 AIR-------------------------SA--------------------GVNDQVEHAV 234
AI SA GVND +E A
Sbjct: 222 AISLHAVDDEVRTELIPMNKAFNIQSIISAVKRFPYDNRKRVMFEYLMIRGVNDSLESAK 281
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
+L +LL G +NLI FNP +GS+Y+RP ++ + FA L + +IR +RG++
Sbjct: 282 KLIKLLE--GIKAKINLIYFNPHDGSEYERPTEENMEKFADYLNRRGLLATIRASRGVEI 339
Query: 295 SAACGQLRNEFQKSP 309
SAACGQLR +F+ S
Sbjct: 340 SAACGQLREKFENSK 354
>gi|365154435|ref|ZP_09350868.1| ribosomal RNA large subunit methyltransferase N [Campylobacter sp.
10_1_50]
gi|363650273|gb|EHL89364.1| ribosomal RNA large subunit methyltransferase N [Campylobacter sp.
10_1_50]
Length = 381
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/354 (35%), Positives = 176/354 (49%), Gaps = 63/354 (17%)
Query: 25 FTCPS-RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
PS R Q W + A++ + +P+ R DL E + + L + ++DG+
Sbjct: 15 LVSPSFRATQIYEWVYKKNATEFSQMLN-LPKDMRQDLTEK-FYLDPLKCVKFEQSSDGS 72
Query: 84 VKLLIKLEDNRLIETVGIP----VEDEKGPM----RLTACVSSQVGCPLRCSFCATGKGG 135
+K L +L+D IE+V +P + DE G + R T CVSSQVGC + C+FC T KGG
Sbjct: 73 IKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTVCVSSQVGCKMGCAFCLTAKGG 132
Query: 136 FSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHR--CLNKDVQ 190
RNL++ EIVGQ+L I+ I R NVV+MGMGEP+ NL +V +A + LN+ +
Sbjct: 133 LVRNLTAGEIVGQILWIKRGNNIPYERRINVVYMGMGEPLDNLANVSKAIKILALNEGLA 192
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------ 226
I R T+ST G+ + IKKL L LAI V
Sbjct: 193 ISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPINKAYNIEAVMDAV 252
Query: 227 ---------------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
ND V A +L +LLH G VNLI FNP EGS++ RP
Sbjct: 253 RGFPIDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLH--GIKAKVNLIYFNPHEGSEFGRP 310
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSS 319
++L F L H +T +IRQ++GLD SAACGQL+ + R + S+ ++
Sbjct: 311 ELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQLKQRNENPKFRANVSDKNA 364
>gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
Length = 358
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 169/318 (53%), Gaps = 61/318 (19%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DE 106
+ +P+ + L E + + L I + DG+ K L L+DN+ +E V +P++ DE
Sbjct: 43 KNLPKELKEQLNET-YYLDPLRIVTIEESCDGSKKYLFALKDNQTVEAVLLPMKQEQVDE 101
Query: 107 KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHR 159
+G + R T C+SSQVGC + C+FC TGK GF RNL++ EI QVL I+ I ++R
Sbjct: 102 EGKLVHHARYTICISSQVGCKIGCAFCLTGKSGFKRNLTAGEITTQVLMIKRDNAIAENR 161
Query: 160 VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLA------ 211
N+V+MGMGEP+ NL +V +A R + + I R TIST G+ + I+KL
Sbjct: 162 RVNIVYMGMGEPLDNLTNVSKAVRIFSDLDGLSISPRRQTISTSGLSSQIEKLGKMDLGI 221
Query: 212 ----------------------SYKLQSTL-AIRS----------------AGVNDQVEH 232
+Y ++S + A+R GVND +
Sbjct: 222 LLAISLHAVDDDLRQKLMPINKAYNIESIMNAVRGFPIDARKRVMFEYLVMKGVNDDQKS 281
Query: 233 AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292
A +L +LLH G VNLI FNP GSD+ RP K ++AF L H + +IRQ++GL
Sbjct: 282 AKKLVKLLH--GIKAKVNLIYFNPHAGSDFDRPSTKDMIAFQQYLVDHGVLCTIRQSKGL 339
Query: 293 DASAACGQLRNEFQKSPL 310
D SAACGQL+++ QK+ L
Sbjct: 340 DISAACGQLKDKEQKNDL 357
>gi|410658817|ref|YP_006911188.1| Ribosomal RNA large subunit methyltransferase N [Dehalobacter sp.
DCA]
gi|410661803|ref|YP_006914174.1| Ribosomal RNA large subunit methyltransferase N [Dehalobacter sp.
CF]
gi|409021172|gb|AFV03203.1| Ribosomal RNA large subunit methyltransferase N [Dehalobacter sp.
DCA]
gi|409024159|gb|AFV06189.1| Ribosomal RNA large subunit methyltransferase N [Dehalobacter sp.
CF]
Length = 360
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 142/285 (49%), Gaps = 49/285 (17%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
L + + +ADGT K L +L D IETV + + R T CVS+QVGCP+ C FCA
Sbjct: 66 LTVLKAQRSADGTRKFLFRLADGESIETVLMDYDHLTSRDRHTLCVSTQVGCPVGCPFCA 125
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
TG GF RNL++ EI GQVL I + K VTN+VFMGMGEP LN +V++A R L
Sbjct: 126 TGMDGFRRNLTAGEITGQVLEISRLLQQEDPKFTVTNIVFMGMGEPFLNYDAVMKAIRIL 185
Query: 186 NKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGV----------------- 226
N + IG R +TIST GV I +LA Q LA+ V
Sbjct: 186 NSENGQNIGMRRMTISTSGVAPKIIQLAQDNPQVGLAVSLHSVRNEVRDTLVPINRRYPL 245
Query: 227 ----------NDQVEHAVELAELLHEW---------------GRGHHVNLIPFNPIEGSD 261
+DQ V LH+ G HVNLIP NP+ GSD
Sbjct: 246 QELLEACRYYSDQTNRRVTFEFALHQQNVSKEEAEKLVVLLKGMLAHVNLIPINPVIGSD 305
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
QR K+ + F LE+ KI SIR+ +GLD AACGQLR +
Sbjct: 306 VQRAGKERLTMFKRVLEAGKIPVSIREEKGLDIDAACGQLRQRLE 350
>gi|410994952|gb|AFV96417.1| hypothetical protein B649_00515 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 357
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 160/310 (51%), Gaps = 61/310 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE------ 106
+P++ R +L E + + L I R + DGT+K L +L D + +ETV + ++DE
Sbjct: 45 LPKAMREEL-EREYEIMPLKIARKECSTDGTIKYLFELSDGKTVETVWLKMKDESIDEEG 103
Query: 107 --KGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE---EIFKHRVT 161
+ R T CVS+QVGC + CSFC T KGGF+R+LS+ EIV QVLA++ + HR
Sbjct: 104 NIEHEARFTVCVSTQVGCKVGCSFCLTAKGGFTRDLSAGEIVAQVLAVKMDNNLAAHRRL 163
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NL ++ +A + + I + T+ST G+ I KL L +
Sbjct: 164 NIVYMGMGEPLDNLDNLAKAITIFKDEEGLSISGKRQTVSTSGLSTKIDKLGEMDLGVHI 223
Query: 220 AI---------RS------------------------------------AGVNDQVEHAV 234
AI RS G ND + A
Sbjct: 224 AISLHAVDDELRSELIPMNKAYNIASIIDAVKRFPIDTRKRVMFEYLVIKGKNDDLVSAK 283
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
+L +LLH G VNLI FNP EGSDYQRP + ++AF L H + +IR ++GLD
Sbjct: 284 KLVKLLH--GIKAKVNLIFFNPYEGSDYQRPSRADMVAFQEYLIKHGVLCTIRDSKGLDI 341
Query: 295 SAACGQLRNE 304
SAACGQL+ +
Sbjct: 342 SAACGQLKEK 351
>gi|405984196|ref|ZP_11042499.1| 23S rRNA methyltransferase [Slackia piriformis YIT 12062]
gi|404388028|gb|EJZ83112.1| 23S rRNA methyltransferase [Slackia piriformis YIT 12062]
Length = 339
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 159/328 (48%), Gaps = 70/328 (21%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTV-----TAADGTV 84
R +Q W + GAS +P S + L++ P+ V ++DGT
Sbjct: 26 RAKQIVQWLYQKGASSYDEMSN-IPASLKEVLEKEA------PLHPPVISDKRVSSDGTR 78
Query: 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHE 144
K +I+ D E VGIP +D RLT C S+QVGCP+ C+FCATGK GF+RNL E
Sbjct: 79 KYIIRFHDGAETEMVGIPSKD-----RLTVCFSTQVGCPMGCTFCATGKEGFTRNLLPGE 133
Query: 145 IVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
+V QV+ ++E F RV+NVV MG GEP+LN +VL A R LN + IG R ITIST G
Sbjct: 134 MVDQVMLVQEDFGERVSNVVGMGQGEPLLNYDNVLAALRFLNSPDGLNIGARRITISTCG 193
Query: 203 VPNTIKKLASYKLQSTLAI--RSA------------------------------------ 224
+ I + A Q TLAI SA
Sbjct: 194 LLQGIDQFAREPEQFTLAISLHSAIQETRDDIMPALMNQKLPALKRAVQRYQEESGRRVT 253
Query: 225 -------GVNDQVEHAVELAELLHEWGRGH--HVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
GVND EH L L+H + RG HVNLIP N +EG+ Y A F
Sbjct: 254 YEYVMINGVNDDAEH---LKALVH-FCRGTLCHVNLIPVNGVEGTGYAPSASDASALFLK 309
Query: 276 ALESHKITTSIRQTRGLDASAACGQLRN 303
L S I +IRQ+RG D + ACGQL+N
Sbjct: 310 ELTSKGIEATIRQSRGADIAGACGQLKN 337
>gi|255323622|ref|ZP_05364752.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
gi|255299336|gb|EET78623.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
Length = 363
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 174/333 (52%), Gaps = 62/333 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W + A+ +P+ R +L + + + L + +ADG++K L
Sbjct: 19 PFRAKQIFEWLYKKNATSFDEMLN-LPKDLRANLVQE-FYLDPLKCVKFERSADGSIKYL 76
Query: 88 IKLEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRN 139
+L+D IE+V +P++ DE G + R T CVSSQVGC + CSFC TGK G +RN
Sbjct: 77 FELKDGLRIESVLLPMKEELNDENGEVTRHARYTICVSSQVGCRMGCSFCLTGKSGLTRN 136
Query: 140 LSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQR 194
L+ EIVGQ+L I+ +I R NVV+MGMGEP+ NL++V +A + L N + I R
Sbjct: 137 LTPGEIVGQILCIKRENKIPYERRVNVVYMGMGEPLDNLENVSKAIKILKENDGLAITPR 196
Query: 195 MITISTVGVPNTIKKLA----------------------------SYKLQSTL-AIRS-- 223
T+ST G+ + IKKL +YK++S + A+R
Sbjct: 197 RQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSKLMPINNAYKIESVMEAVRGFP 256
Query: 224 --------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
+ND ++ A +L LLH G VNLI FNP EGS+Y RP
Sbjct: 257 IDMRKRVMFEYLVIKDMNDGIKDAKKLVSLLH--GIKAKVNLIYFNPHEGSEYGRPNTAD 314
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ AF L H +T +IRQ++GLD SAACGQL+
Sbjct: 315 MEAFQTYLRDHGVTCTIRQSKGLDISAACGQLK 347
>gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381]
gi|205829692|sp|A7I414.1|RLMN_CAMHC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381]
Length = 358
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 160/310 (51%), Gaps = 61/310 (19%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE---- 106
+ +P R DL + +G L + + + DG+ K L +L+D + IE+V +P++DE
Sbjct: 41 KNLPLQMREDLANE-FYIGGLNVSKCEQSVDGSKKYLFELKDGKTIESVLLPMKDEITDE 99
Query: 107 KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HR 159
G + R T CVSSQVGC + C+FC T KGGF RNLS+ EIV Q+ I++I K R
Sbjct: 100 NGEILRHKRYTICVSSQVGCKIGCAFCLTAKGGFVRNLSAGEIVEQIRLIKKINKIPYER 159
Query: 160 VTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQS 217
NVV+MGMGEP+ NL++V +A + L N+ + I R TIST G+ + IKKL L
Sbjct: 160 RINVVYMGMGEPLNNLENVAKAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGEMNLGV 219
Query: 218 TLAIR---------------------------------------------SAGVNDQVEH 232
LAI GVND +
Sbjct: 220 LLAISLHAVNDELREKLMPINRAYNIASIMQAVREFPIDLRKRVMFEYLVMDGVNDSIND 279
Query: 233 AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292
A L LL+ G VNLI FNP GS + RP ++ ++ F L H IT +IRQ++GL
Sbjct: 280 AKTLVRLLN--GIKAKVNLIYFNPHIGSKFHRPSEENMIKFQDYLSVHGITCTIRQSKGL 337
Query: 293 DASAACGQLR 302
D SAACGQLR
Sbjct: 338 DISAACGQLR 347
>gi|94984740|ref|YP_604104.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
geothermalis DSM 11300]
gi|123079957|sp|Q1J0P9.1|RLMN_DEIGD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|94555021|gb|ABF44935.1| 23S rRNA m(2)A-2503 methyltransferase [Deinococcus geothermalis DSM
11300]
Length = 344
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 153/289 (52%), Gaps = 67/289 (23%)
Query: 70 RLPIFR---TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRC 126
RL FR TV +ADG+VK L L+D R +E V +P D K T CVS+ VGCP +C
Sbjct: 53 RLNPFREIETVRSADGSVKYLFTLQDGRQMEAVYMPYLDRK-----TICVSTMVGCPAKC 107
Query: 127 SFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHR 183
+FCATG GF RNL+ EIVGQVLA+ E + + N+VFMGMGEP+LN ++ ++A R
Sbjct: 108 AFCATGAMGFGRNLTPGEIVGQVLAVAGGEGLAPRELRNLVFMGMGEPLLNYENTMQAAR 167
Query: 184 CLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAIRSA----------------- 224
L +G +R +T+STVG+P I++LA+ + L I+ A
Sbjct: 168 ILLHPQALGMSKRRVTLSTVGLPKGIRRLAA---EDDLGIKLAISLHAPDEATRQRIIPT 224
Query: 225 --------------------------------GVNDQVEHAVELAELLHEWGRGHHVNLI 252
G+ND + A ELA+LL G HVNLI
Sbjct: 225 GHRNSIAEIMAAAREYQAVTGRRVTFEYSMLRGINDHLWQAEELADLLR--GLVSHVNLI 282
Query: 253 PFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
P NP +GS ++ ++ + AF L + + S+R++RG DA AACGQL
Sbjct: 283 PMNPWDGSGFESSTEEQIQAFYDVLAARGVDVSVRRSRGKDAGAACGQL 331
>gi|347732286|ref|ZP_08865367.1| 23S rRNA methyltransferase [Desulfovibrio sp. A2]
gi|347518820|gb|EGY25984.1| 23S rRNA methyltransferase [Desulfovibrio sp. A2]
Length = 378
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 153/284 (53%), Gaps = 55/284 (19%)
Query: 72 PIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
P RTV T++DGTVK L+ L D L+ETV IP E +G +R+T C+S QVGC + C+FC+
Sbjct: 65 PEVRTVKTSSDGTVKFLLALSDGALVETVLIPSESREGKVRMTQCLSCQVGCAMGCTFCS 124
Query: 131 TGKGGFSRNLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRC 184
TG GF RN++ EI+GQVL A E + R V N+VFMGMGEP+LNL V+ + R
Sbjct: 125 TGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRT 184
Query: 185 LNKDVQI--GQRMITISTVGVPNTIKKLA--------------SYKLQSTLAIRSA---- 224
LN + + R IT+ST G+ +++L + +L++ + R+A
Sbjct: 185 LNDEFGLCFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQELRARIMPRAARWTL 244
Query: 225 --------------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
GVND +EHA EL L+ +NLI +NP E
Sbjct: 245 DDLMAALESYPLKTRERITFEYLLLGGVNDSIEHARELVRLVSR--TKAKLNLIVYNPAE 302
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G Y+ P + +LAF L S +T IR+++G D AACGQL+
Sbjct: 303 GLPYEAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKAACGQLK 346
>gi|152989809|ref|YP_001355531.1| hypothetical protein NIS_0057 [Nitratiruptor sp. SB155-2]
gi|205829830|sp|A6Q115.1|RLMN_NITSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151421670|dbj|BAF69174.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 355
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 166/333 (49%), Gaps = 62/333 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GA K +P+S R +L+E +T+ I + DG+ K L+
Sbjct: 21 RANQIYQWIYQKGA-KDFESMSNLPKSMREELKEK-FTITPPKILNVEVSKDGSKKYLLG 78
Query: 90 LEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L+D +E+V +P++ DEKG + R T CVSSQVGC + C FC T KGGF RNL+
Sbjct: 79 LQDGHTVESVLLPMKKEERDEKGNILKEARYTVCVSSQVGCKVGCEFCLTAKGGFVRNLT 138
Query: 142 SHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMI 196
EIV QVL I E I +R N+V+MGMGEP+ NL++V +A + + + + I R
Sbjct: 139 PGEIVEQVLTIREDNNIPANRRVNIVYMGMGEPLDNLENVAKAVKIFSDEHGMSISPRRQ 198
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------------ 226
TIST G+ IKKL L LAI V
Sbjct: 199 TISTSGLAPKIKKLGEMNLGVLLAISLHAVDDELRQKLMPINKAYNIESVIQAVKEFPID 258
Query: 227 ---------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
ND ++ A +L +LLH G VNLI FNP GS +QRP K V
Sbjct: 259 QRKRVMFEYLMIKNLNDDLKAAKKLVKLLH--GIKAKVNLIYFNPYPGSPFQRPEPKDVE 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
AF L H + +IR+++GLD SAACGQL+ +
Sbjct: 317 AFQKYLLDHGVLCTIRESKGLDISAACGQLKEK 349
>gi|220903723|ref|YP_002479035.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868022|gb|ACL48357.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 386
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 149/292 (51%), Gaps = 54/292 (18%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGT K L++LED IETV IP + +G R T C+S QVGC + C+FC+TG+ GF RN+
Sbjct: 97 DGTTKFLLRLEDGAQIETVLIPSDSREGVRRWTQCLSCQVGCTMGCTFCSTGQMGFERNM 156
Query: 141 SSHEIVGQVLAIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG-- 192
+ EI+GQ+L E + N+VFMGMGEP+LNLK V+ + LN D +G
Sbjct: 157 TMGEILGQILVAREHLGDTRLHWPILRNLVFMGMGEPLLNLKEVMRSLESLNNDKGLGFS 216
Query: 193 QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA----- 220
R IT+ST G+ +K+L A ++L +A
Sbjct: 217 PRRITVSTCGIEKGLKELGESGLAFLAVSLHAPNQAVRERIMPKAARWRLNDLMAALKSY 276
Query: 221 ------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ GVND +EHA ELA L+ +N+I +N EGS YQ P ++
Sbjct: 277 PLKTREHITFEYLMLGGVNDSLEHARELAPLVS--AVKGKLNIIVYNAAEGSPYQAPSEE 334
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSE 320
+LAF L S IT IR+++G D AACGQL+ QK D+ + E
Sbjct: 335 RILAFEKYLWSKDITAIIRKSKGQDIKAACGQLKAARQKDTAAADADPKNCE 386
>gi|374582946|ref|ZP_09656040.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
gi|374419028|gb|EHQ91463.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
Length = 354
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 144/285 (50%), Gaps = 49/285 (17%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
L R + DGT K L +LED IE V + R T CVS+QVGCP+ CSFCA
Sbjct: 66 LDKIREQRSKDGTRKYLFRLEDGETIECVLMDYARTTSRDRHTVCVSTQVGCPVGCSFCA 125
Query: 131 TGKGGFSRNLSSHEIVGQVLAI-----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
TG GF RNLS EIVGQVL I +E +VTN+VFMGMGEP+LN VL+A + L
Sbjct: 126 TGLEGFRRNLSVAEIVGQVLDITYYVRQEDPDFQVTNLVFMGMGEPLLNYDRVLKAIQLL 185
Query: 186 N--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV--------- 234
N + + IG R +TIST GV I +LA Q LA+ D + + +
Sbjct: 186 NHSRGLNIGMRRMTISTSGVAPKIVQLAEDNPQVGLAVSLHAAQDAIRNDLIPMNRRYPL 245
Query: 235 -------------------------------ELAELLHEWGRGH--HVNLIPFNPIEGSD 261
E AE L +GH HVNLIP NP+EG+
Sbjct: 246 EQLMKACREYTQRTKRRITYEVALTSENAKREEAEALARLLKGHLGHVNLIPVNPVEGTG 305
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+RP + + FA LE I+ S R+ RG D AACGQLR +++
Sbjct: 306 MERPDPEKIRRFAQVLEEAGISVSSREERGTDIDAACGQLRRQWE 350
>gi|424782345|ref|ZP_18209192.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
showae CSUNSWCD]
gi|421959665|gb|EKU11273.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
showae CSUNSWCD]
Length = 363
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 174/333 (52%), Gaps = 62/333 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W + A+ +P+ R +L + + + L + +ADG++K L
Sbjct: 19 PFRAKQIFEWLYKKNATSFDEMLN-LPKDLRANLAQQ-FYLDPLKCVKFEQSADGSIKYL 76
Query: 88 IKLEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRN 139
+L+D IE+V +P++ D+ G + R T CVSSQVGC + CSFC TGK G +RN
Sbjct: 77 FELKDGLRIESVLLPMKEELSDKNGEVARHARYTICVSSQVGCRMGCSFCLTGKSGLTRN 136
Query: 140 LSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQR 194
L+ EIVGQ+L I+ +I R NVV+MGMGEP+ NL++V +A + L N + I R
Sbjct: 137 LTPGEIVGQILWIKRENKIPYERRVNVVYMGMGEPLDNLENVSKAIKILKENDGLAIAPR 196
Query: 195 MITISTVGVPNTIKKLA----------------------------SYKLQSTL-AIRS-- 223
T+ST G+ + IKKL +YK++S + A+R
Sbjct: 197 RQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSKLMPINNAYKIESVMEAVRGFP 256
Query: 224 --------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
+ND ++ A +L LLH G VNLI FNP EGS+Y RP
Sbjct: 257 IDMRKRVMFEYLVIKDMNDGIKDAKKLVSLLH--GIKAKVNLIYFNPHEGSEYGRPNTAD 314
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ AF L H +T +IRQ++GLD SAACGQL+
Sbjct: 315 MEAFQTYLRDHGVTCTIRQSKGLDISAACGQLK 347
>gi|413922339|gb|AFW62271.1| hypothetical protein ZEAMMB73_029422 [Zea mays]
Length = 213
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 117/189 (61%), Gaps = 45/189 (23%)
Query: 183 RCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRS------------------- 223
R ++++IGQRM+TISTVGVPNTIK LAS+KLQSTLA+
Sbjct: 25 RSPGEELKIGQRMMTISTVGVPNTIKMLASHKLQSTLAVSLHAPNQKLRETIVPSTKSYP 84
Query: 224 --------------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPI 257
AG+ND+ EHAVELAELL G G+HVNLIP+NPI
Sbjct: 85 LGALMDDCKSYFLETGCRVSFEYTLLAGINDEKEHAVELAELLRMCGGGYHVNLIPYNPI 144
Query: 258 EGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNS 317
EGS+Y+RPY+K V AF ALE+ KIT S+R+TRGLDA+AACGQLRNEFQK+PL +
Sbjct: 145 EGSEYKRPYRKVVQAFVDALEARKITVSVRRTRGLDANAACGQLRNEFQKNPLLEIELSP 204
Query: 318 SSESDIAVA 326
S+E + A
Sbjct: 205 STERTLITA 213
>gi|402574140|ref|YP_006623483.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfosporosinus meridiei
DSM 13257]
gi|402255337|gb|AFQ45612.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfosporosinus meridiei
DSM 13257]
Length = 354
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 144/281 (51%), Gaps = 49/281 (17%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
R + DGT K L +LED IE V + K R T CVS+QVGCP+ C+FCATG
Sbjct: 70 REQRSKDGTRKYLFRLEDGETIECVLMDYARLKARDRHTICVSTQVGCPVGCAFCATGLE 129
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--K 187
GF RNLS+ EI+ QVL I + + +VTN+VFMGMGEPMLN VL++ R LN +
Sbjct: 130 GFKRNLSAAEIISQVLDISQDIQQEDPDFQVTNIVFMGMGEPMLNYDQVLKSIRVLNQAQ 189
Query: 188 DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELA 237
+ IG R +TIST GV I +LA Q LA+ +D + EL
Sbjct: 190 GLNIGMRRMTISTSGVVPKIIQLAKDNSQVGLAVSLHAADDSTRDKLIPMNRRYPLSELM 249
Query: 238 ELLHEW--------------------------------GRGHHVNLIPFNPIEGSDYQRP 265
E E+ G+ HVNLIP NP+ G+ +RP
Sbjct: 250 EACREYSRITHRRITFEVALTADNSKPAEAEALARLLKGQLGHVNLIPVNPVVGTGMERP 309
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
++ ++ FA LE I+ S R+ RG D AACGQLR +++
Sbjct: 310 SQEKIVKFAQVLEDAGISVSSREERGTDIDAACGQLRRQWE 350
>gi|383787538|ref|YP_005472107.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
gi|383110385|gb|AFG35988.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
Length = 353
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 148/276 (53%), Gaps = 57/276 (20%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
++ D T K L +LED IE+V + P R+TAC+SSQVGCP++C+FCATG+ G+
Sbjct: 72 ISKIDKTTKFLWQLEDGNTIESVLLF-----HPDRVTACISSQVGCPVKCAFCATGQSGY 126
Query: 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQR 194
RNLS+ EIV QV+A+E+ + + N+V+MGMGEP+LN V+++ R LN K I R
Sbjct: 127 VRNLSAGEIVAQVIAMEKERRVNIGNIVYMGMGEPLLNYNEVVKSVRILNHKKGKNISMR 186
Query: 195 MITISTVGVPNTIKKLASYKLQSTLAI-----------------RSAGV----------- 226
I+ISTVG+P I +LA+ + LAI R V
Sbjct: 187 RISISTVGIPEKIVQLANDLPEVKLAISLHAPTNYKRDLIIPMNRKYSVEEIIHAVKEYQ 246
Query: 227 -----------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---YQRPY 266
ND V+ A +LAELL G G +VNLIP NP+E +RP+
Sbjct: 247 KITKNRVTFEYILIREFNDFVDDAEKLAELLR--GIGAYVNLIPVNPVETDSEIKMERPH 304
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
A+ F L+ H I IR+ +G D AACGQLR
Sbjct: 305 HWAIERFKEILDKHNIENEIRREKGTDIDAACGQLR 340
>gi|154175427|ref|YP_001407355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
curvus 525.92]
gi|402546570|ref|ZP_10843445.1| 23S rRNA m2A2503 methyltransferase [Campylobacter sp. FOBRC14]
gi|205829690|sp|A7GVW3.1|RLMN_CAMC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|112802451|gb|EAT99795.1| radical SAM enzyme, Cfr family [Campylobacter curvus 525.92]
gi|401017383|gb|EJP76144.1| 23S rRNA m2A2503 methyltransferase [Campylobacter sp. FOBRC14]
Length = 371
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 174/352 (49%), Gaps = 64/352 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + A +P+ R +L + + L + ++DG++K L
Sbjct: 21 RAKQIYEWIYKKNAENFDEMLN-LPKDMRTNLAQE-FYFDPLYCVKFEESSDGSIKYLFA 78
Query: 90 LEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L+D IE+V +P++ DE G + R T CVSSQVGC + C FC T KGG RNLS
Sbjct: 79 LKDGNTIESVLLPMKEVEVDEGGNISRHARYTICVSSQVGCKMGCLFCLTAKGGLKRNLS 138
Query: 142 SHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMI 196
EIVGQ+L I++ I R NVV+MGMGEP+ NL +V +A + L + + I R
Sbjct: 139 PGEIVGQILWIKKTNHIPYERRVNVVYMGMGEPLDNLANVAKAIQILKEPDGLAISPRRQ 198
Query: 197 TISTVGVPNTIKKLASYKLQSTLAI---------RSA----------------------- 224
T+ST G+ IKKL L LAI RS
Sbjct: 199 TVSTSGLGAQIKKLGEMDLGVLLAISLHAVTNELRSKLMPVNKAYNIEAVMDAVRGFPID 258
Query: 225 -------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
G+ND V+ A L +LLH G VNLI FNP EGS+Y RP +L
Sbjct: 259 MRKRVMFEYLVIRGMNDSVKDAKTLVKLLH--GIKAKVNLIYFNPHEGSEYGRPELADML 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESDI 323
F L +H +T +IRQ++GLD SAACGQL+ Q L ++N+S SDI
Sbjct: 317 EFQEYLRAHGVTCTIRQSKGLDISAACGQLKQRSQN--LSPSNNNTSKPSDI 366
>gi|171909569|ref|ZP_02925039.1| YloN [Verrucomicrobium spinosum DSM 4136]
Length = 390
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 152/294 (51%), Gaps = 53/294 (18%)
Query: 61 LQEA---GWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIP----VEDEKGPMRLT 113
LQEA T+ + R + D T K L KL D R IETV IP + E+ R T
Sbjct: 73 LQEALATRLTLRSMTYARVEGSEDTTRKFLFKLYDGRFIETVLIPASPSLYGERSDRR-T 131
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML 173
CVSSQVGC C FCA+G GF+RNL++ EIV Q+L +E++ RV N+VFMGMGEP+
Sbjct: 132 LCVSSQVGCAYDCKFCASGLAGFTRNLTAGEIVEQILQVEKLAGARVDNLVFMGMGEPLA 191
Query: 174 NLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVE 231
NL +V+ A LN V IG R +T+ST G+ I KLA + LQ LAI G +++V
Sbjct: 192 NLTNVMRAIEVLNAQWGVNIGARHMTVSTSGLAPQIHKLADFPLQVRLAISLHGASNEVR 251
Query: 232 HAV----------ELAELLHEWGR--------------------------GHH------- 248
+ + EL L W G H
Sbjct: 252 NQIMPVNRKYPLEELFPALEYWNSKKKQRLTFEFILIDGVNDSLEQARLLGEHASRLDAK 311
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VNLIP+N +EG ++RP ++ F + SH + T++R+ +G D +AACGQLR
Sbjct: 312 VNLIPYNTVEGLQWKRPSERRQDTFRDIVASHDVMTTLRREKGHDIAAACGQLR 365
>gi|313681247|ref|YP_004058985.1| 23S rRNA m(2)a-2503 methyltransferase [Sulfuricurvum kujiense DSM
16994]
gi|313154107|gb|ADR32785.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfuricurvum kujiense DSM
16994]
Length = 354
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 169/335 (50%), Gaps = 66/335 (19%)
Query: 30 RGRQRAPW--HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
R +Q W H A + +T + +P++ R +L + + + L I R + DGT+K L
Sbjct: 23 RAKQIWGWIYHQYATSFETMQN---LPKTMREELAQT-YEIMPLKIARKECSTDGTIKYL 78
Query: 88 IKLEDNRLIETVGIPVEDE--------KGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
+L D + +ETV + ++DE + R T CVS+QVGC + CSFC T KGGF+R+
Sbjct: 79 FELSDGKTVETVWLKMKDESIDEEGNIEHEARYTVCVSTQVGCKVGCSFCLTAKGGFTRD 138
Query: 140 LSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQR 194
L++ EIV QVLA++ + HR N+V+MGMGEP+ NL ++ +A L + + I +
Sbjct: 139 LTAGEIVAQVLAVKMDNNLAAHRRLNIVYMGMGEPLDNLDNLAKAITILKDEEGLSISGK 198
Query: 195 MITISTVGVPNTIKKLASYKLQSTLAIRSAGV---------------------------- 226
T+ST G+ I KL L +AI V
Sbjct: 199 RQTVSTSGLSTKIDKLGEMDLGVHIAISLHAVDDELRTELIPMNKAYNIASIIDAVKRFP 258
Query: 227 -----------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
ND + A +L +LLH G VNLI FNP GSDYQRP ++
Sbjct: 259 IDTRKRVMFEYLVIKNKNDDLGSAKKLVKLLH--GIKAKVNLIYFNPYPGSDYQRPSRED 316
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
++AF L H + +IR ++GLD SAACGQL+ +
Sbjct: 317 MVAFQEYLIKHGVLCTIRDSKGLDISAACGQLKEK 351
>gi|218886526|ref|YP_002435847.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|254807169|sp|B8DRU2.1|RLMN_DESVM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218757480|gb|ACL08379.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 367
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 150/284 (52%), Gaps = 55/284 (19%)
Query: 72 PIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
P RTV T++DGTVK L+ L D L+ETV IP E +G +R+T C+S QVGC + C+FC+
Sbjct: 65 PEVRTVKTSSDGTVKFLLALADGALVETVLIPSESREGKVRMTQCLSCQVGCAMGCTFCS 124
Query: 131 TGKGGFSRNLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRC 184
TG GF RN++ EI+GQVL A E + R V N+VFMGMGEP+LNL V+ + R
Sbjct: 125 TGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRT 184
Query: 185 LNKDVQI--GQRMITISTVGVPNTIKKL---------------------------ASYKL 215
LN + + R IT+ST G+ +++L A + L
Sbjct: 185 LNDEFGLCFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQEVRARIMPRAARWTL 244
Query: 216 QSTLA-----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
+A + GVND ++HA EL L+ +NLI +NP E
Sbjct: 245 DDLMAALESYPLKTRERITFEYLLLGGVNDSIDHARELVRLVSR--TKAKLNLIVYNPAE 302
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G Y+ P + +LAF L S +T IR+++G D AACGQL+
Sbjct: 303 GLPYEAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKAACGQLK 346
>gi|392407646|ref|YP_006444254.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
gi|390620782|gb|AFM21929.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
Length = 344
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 148/277 (53%), Gaps = 54/277 (19%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R T+ DGT K L +L+D +E+V + ++G RLTAC+S+QVGCPL C+FCA+G
Sbjct: 70 LVRAETSKDGTRKFLWQLQDGERVESVLLA---QQG--RLTACLSTQVGCPLSCAFCASG 124
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQ 190
K GF RNLS+ EI GQ LA+E+ + N+V+MGMGEP LN ++V ++ R LN K
Sbjct: 125 KSGFVRNLSTGEITGQFLAMEKFTGQDIDNIVYMGMGEPFLNQEAVFKSIRILNEPKMRG 184
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAI----------------------------- 221
+G R TIST G+ I LA K+ L++
Sbjct: 185 LGIRHFTISTAGIVPGILVLAEMKIPVRLSVSLHAPNDQLRSKLMPINKQYPLSTLMEAL 244
Query: 222 ---RSA-------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+SA GVND EHA ELA LL G +VNLIP+N + G +++R
Sbjct: 245 RKYQSATKDRITIEYLMMNGVNDSTEHAYELATLLS--GLSVYVNLIPYNTVPGGNFKRS 302
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ AFA L I IR+ RG D +AACGQLR
Sbjct: 303 TDGRIKAFADILSKLNIECEIRRERGSDINAACGQLR 339
>gi|289522515|ref|ZP_06439369.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289504351|gb|EFD25515.1| radical SAM enzyme, Cfr family [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 343
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 148/279 (53%), Gaps = 55/279 (19%)
Query: 72 PIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
PI R T+ DGT K L + D +E+V + E RLTAC+S+QVGCPL C+FCA
Sbjct: 68 PILTREETSKDGTKKYLWQFHDGERVESVLLSQEG-----RLTACLSTQVGCPLACTFCA 122
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KD 188
+G+GGF R+LS EIVGQ LA+E++ + NVV+MGMGEP LN +SV ++ + LN K
Sbjct: 123 SGEGGFVRDLSGGEIVGQFLAMEKLAGRDIDNVVYMGMGEPFLNQESVFKSIKILNEPKM 182
Query: 189 VQIGQRMITISTVGVPNTIKKLAS----------------------------YKLQSTL- 219
+G R ITIST G+ I LA Y L S L
Sbjct: 183 RGLGIRRITISTAGIVPGILALAEAQMPVKLSVSLHAPNDRLRSKLMPINKKYPLASLLE 242
Query: 220 AIRS----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
A+R GVND E+A ELA LL G ++NLIP+N +EGS Y+
Sbjct: 243 ALRRYQSATNDRVTFEYLMLEGVNDLPEYAYELAALLK--GLSFYINLIPYNQVEGSKYK 300
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
R + AF+ L I IR+ RG D +AACGQL+
Sbjct: 301 RSSAGRIKAFSNILSQLNIEHEIRRERGSDINAACGQLK 339
>gi|313680864|ref|YP_004058603.1| 23S rRNA m(2)a-2503 methyltransferase [Oceanithermus profundus DSM
14977]
gi|313153579|gb|ADR37430.1| 23S rRNA m(2)A-2503 methyltransferase [Oceanithermus profundus DSM
14977]
Length = 370
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 158/322 (49%), Gaps = 59/322 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q A W + GA + +P+ R L E W + + + ++DG+VK L
Sbjct: 53 RKGQIASWLYKKGAREFEEM-TDLPRRLREAL-EQDWRISEFALVQAFPSSDGSVKYLFT 110
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D R E V +P D K T C+SSQVGCP C+FCATGK GF RNL+ EI+ Q+
Sbjct: 111 LHDGRRTEAVYLPYADRK-----TVCISSQVGCPAGCTFCATGKMGFGRNLTGPEILDQI 165
Query: 150 LAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEA-HRCLNKD-VQIGQRMITISTVGVP 204
LA+ + + + NVV MGMGEP+LN +++ A R L+K+ + + R IT+STVG+P
Sbjct: 166 LAVAYHQGLGPREIRNVVLMGMGEPLLNYENIAWAVRRMLDKNALAMSPRRITLSTVGIP 225
Query: 205 NTIKKLASYKLQSTLAIRSAG--------------------------------------- 225
I++LA L LA+
Sbjct: 226 GGIRRLAEGDLGVKLALSLHAPDDETRRRIIPTAHRYSIAEIMEAVRAYFDRTKRRVTIE 285
Query: 226 ------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
VND+ E A ELA +L G HVNLIPFNP EG+ KK + FA LE
Sbjct: 286 YTMLRDVNDREEQARELARILK--GLVAHVNLIPFNPWEGAPVAGSGKKRIQRFAAVLER 343
Query: 280 HKITTSIRQTRGLDASAACGQL 301
+ ++R +RG+D AACGQL
Sbjct: 344 EGVPVTVRWSRGVDVGAACGQL 365
>gi|268316491|ref|YP_003290210.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
gi|262334025|gb|ACY47822.1| radical SAM enzyme, Cfr family [Rhodothermus marinus DSM 4252]
Length = 364
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 169/327 (51%), Gaps = 59/327 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA+ + +P++FR +L + RL R +TA D TVK+L +
Sbjct: 30 RGRQLFKWIYGKGATSVEQMT-DLPRAFRAELARRA-RITRLEPVRQLTAGDQTVKVLFR 87
Query: 90 LEDNRLIETVGIPVEDEKGPM--RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
L R +E+V IP DE+ RLT CVSSQVGC + C+FCATG GF +NL++ EI
Sbjct: 88 LPSGRHVESVLIPDFDEETGRVRRLTVCVSSQVGCAMGCAFCATGLMGFQQNLTAGEIYD 147
Query: 148 QVLAI----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTV 201
QV + EE F R+TNVV+MGMGEP+LN +VL + L +G R IT+STV
Sbjct: 148 QVWQLNRLAEERFGRRITNVVYMGMGEPLLNYDAVLRSVALLTDRDGLGLSPRRITVSTV 207
Query: 202 GVPNTIKKLASYKLQSTLAI---------RSA---------------------------- 224
G+ I++LA ++ LA+ RSA
Sbjct: 208 GLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNEQTDLDDLIEAIRYFEARTGQ 267
Query: 225 ----------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
G ND+ E A LA+L + VNLI +NP+EG ++RP ++ + AF
Sbjct: 268 TITYEYCLFEGFNDRPEDAHRLADLTEQA--PGKVNLILYNPVEGLPFRRPSEERLQAFI 325
Query: 275 GALESHKITTSIRQTRGLDASAACGQL 301
L +T ++R++RG D +AACGQL
Sbjct: 326 RVLVDRGVTVTVRRSRGQDINAACGQL 352
>gi|365173496|ref|ZP_09361387.1| 23S rRNA methyltransferase [Synergistes sp. 3_1_syn1]
gi|363616838|gb|EHL68261.1| 23S rRNA methyltransferase [Synergistes sp. 3_1_syn1]
Length = 541
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 144/279 (51%), Gaps = 59/279 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R + DGT K L +L D +E+V + D RLTAC+S+QVGCPL+C+FCATG
Sbjct: 70 LAREQRSQDGTRKFLWQLRDGESVESVLMKYGD-----RLTACISTQVGCPLQCTFCATG 124
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQ 190
GF RNLS+ EI GQV AIE+ V NVV+MGMGEP LN +SV+++ LN K
Sbjct: 125 LSGFVRNLSAGEIAGQVTAIEKHIGREVNNVVYMGMGEPFLNTESVIKSAGMLNDPKLRG 184
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAI---------RS------------------ 223
+G R ITIST G+ IK+LA L LA+ RS
Sbjct: 185 LGIRHITISTSGIIQGIKELADSGLGVRLAVSLHAAEDELRSFLMPVNETYPIAELRRAM 244
Query: 224 ------------------AGVNDQVEHAVELAELLHEWGRGHH--VNLIPFNPIEGSDYQ 263
GVND VE A EL L +G H VNLIPFN + G Y+
Sbjct: 245 QEYQAATGDRITIEYALFGGVNDSVERARELVRFL----KGIHVFVNLIPFNAV-GERYE 299
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+P + VL F L++ T IR +G D AACGQLR
Sbjct: 300 KPKAEDVLRFRSILQTAGFETEIRSEQGADIDAACGQLR 338
>gi|300087719|ref|YP_003758241.1| Cfr family radical SAM protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527452|gb|ADJ25920.1| radical SAM enzyme, Cfr family [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 341
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 153/317 (48%), Gaps = 53/317 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q A W A+ +P +FR L E + GR + + DGT+KLL++
Sbjct: 31 RGNQLAEWLYHRDAAAIAEMTN-LPAAFRYRLAEC-YPTGRPVVITRRQSDDGTLKLLLE 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +ETVG+P D R + CVS+Q GCP+ C+FCATG+GG+ R LS+ EIV QV
Sbjct: 89 FADGEQVETVGLPYHD-----RYSCCVSTQAGCPVGCAFCATGQGGYRRQLSAGEIVAQV 143
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
LA+ RV +V FMGMGEP+LN + ++A L +V I R +T+ST+G I +
Sbjct: 144 LAVSREAGRRVDHVTFMGMGEPLLNYDATVKALHLLRDEVGIAARHLTVSTIGHVPGILR 203
Query: 210 LASYKLQSTLA-----------------IRSA---------------------------G 225
LA L TLA +RS G
Sbjct: 204 LARENLPVTLALSLHTPDEVTRRRLIPGLRSTPAEIVTAGREHFALTGRRLTVEYCLLDG 263
Query: 226 VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTS 285
VND+ E A LA LL G G H+NLIPFNP + ++ V F L + +
Sbjct: 264 VNDRPEDASALAVLLE--GTGFHINLIPFNPTDDLPFRPSPATTVERFMNRLRAAGFEVT 321
Query: 286 IRQTRGLDASAACGQLR 302
R RG D AACGQLR
Sbjct: 322 ARVRRGADIEAACGQLR 338
>gi|384917380|ref|ZP_10017506.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
gi|384525238|emb|CCG93379.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
Length = 362
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 160/321 (49%), Gaps = 52/321 (16%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVED-EKGPMR 111
+P R L E + + L + + + DGT K L KL D+ IE+V IP D + R
Sbjct: 44 LPLPLRERLSE-NYVIKTLELEKENDSQDGTKKFLWKLSDSHYIESVLIPASDCIESSRR 102
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
LT CVS+QVGCPL+C FCA+G GF RNLS EIV QVL E I K R++++VFMGMGEP
Sbjct: 103 LTLCVSTQVGCPLKCGFCASGLFGFKRNLSCGEIVEQVLLSEAIAKERISHIVFMGMGEP 162
Query: 172 MLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLAS----------------- 212
+LN + +++A R + + I R ITIST G+ I +LA+
Sbjct: 163 LLNYEQLIQAIRLITSSWGLSISPRRITISTSGIVPNILRLANESLPFRLAISLHATTDE 222
Query: 213 -----------YKLQSTLA-----------------IRSAGVNDQVEHAVELAELLHEWG 244
Y LQ L I AGVND++E LA++
Sbjct: 223 LRNKLMPINRKYPLQDLLKSCEVFCSKRKQKITLEYILIAGVNDRMEDVERLAKIAK--S 280
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR-N 303
VNLI +NP+ ++ P KK ++ F L+ + S+RQ RG D ACGQLR
Sbjct: 281 LKAKVNLIAYNPVLQMPWKTPNKKEIMTFFHKLQIKGVQVSLRQERGRDIDGACGQLRLR 340
Query: 304 EFQKSPLRIDSSNSSSESDIA 324
+ + L+ID S + IA
Sbjct: 341 QIESHLLKIDEKPFSQDLLIA 361
>gi|312143909|ref|YP_003995355.1| radical SAM enzyme, Cfr family [Halanaerobium hydrogeniformans]
gi|311904560|gb|ADQ15001.1| radical SAM enzyme, Cfr family [Halanaerobium hydrogeniformans]
Length = 347
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 165/326 (50%), Gaps = 60/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + G S+T + + +P + L + + + L AADGT+K L +
Sbjct: 25 RGEQVFNWLYKNGISETEKM-KNIPGELKEYLND-NYEITDLKEKAKSQAADGTIKYLWE 82
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D IE V +P + R +AC+S+QVGC L CSFCATG G RNL++ EI+ QV
Sbjct: 83 LKDGENIEGVYLPFPESA---RHSACISTQVGCGLGCSFCATGINGLERNLTTAEIIDQV 139
Query: 150 LAI------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTV 201
L I +E + R++N+VFMGMGEP+ N +++++A +N D + IG R +TISTV
Sbjct: 140 LKIQADISRDEFAEPRLSNIVFMGMGEPLANFENLMQAVEIINSDNGLNIGMRKMTISTV 199
Query: 202 GVPNTIKKLASYKLQSTLA---------------------------------IRSAG--- 225
G+ IKKLA Q LA I G
Sbjct: 200 GLVPEIKKLADRNDQIGLAVSLHAPNDRLRNKIMPINKKYNLNQLLTAVIDYIEKTGRRV 259
Query: 226 ---------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
VND E AV+L ELL G HVNLIP NP+ + ++P +K + +F
Sbjct: 260 TFEYVLMDSVNDSPELAVQLVELLR--GINCHVNLIPANPVPELNIKKPVQKVIDSFYST 317
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L+++ I S+R+ G AACGQL+
Sbjct: 318 LDNNGIQVSLRREMGSQIDAACGQLK 343
>gi|219669867|ref|YP_002460302.1| radical SAM protein [Desulfitobacterium hafniense DCB-2]
gi|259491984|sp|B8FS78.1|RLMN_DESHD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|219540127|gb|ACL21866.1| radical SAM enzyme, Cfr family [Desulfitobacterium hafniense DCB-2]
Length = 357
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 161/326 (49%), Gaps = 51/326 (15%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W V+ A + R + R LQE G + L R A DGT K L +
Sbjct: 30 RGRQVFQW-VQQKAVQNWEELRNIGAGDRQKLQE-GLFLQPLRKVREQIAQDGTRKFLFR 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +E V + + K R T CVS+Q+GC + C+FCATG GG+ RNLS EI+GQV
Sbjct: 88 CADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQV 147
Query: 150 LAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
L I + + +VTN+VFMGMGEP+LN ++VL+A LN + IG R +TIST G
Sbjct: 148 LDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSG 207
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVN----DQV---EHAVELAELLHEWGR---------- 245
V I++LA Q LA+ + DQ+ L EL+ G
Sbjct: 208 VAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTNRRIT 267
Query: 246 ------------------GH-------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
GH HVNLIP NP+ G+ RP K V FA +LES
Sbjct: 268 FEIALISGQATLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESM 327
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQ 306
I S+R+ +G D AACGQLR + +
Sbjct: 328 GIPVSVREEKGTDIDAACGQLRRQLE 353
>gi|392394788|ref|YP_006431390.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525866|gb|AFM01597.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 363
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 156/326 (47%), Gaps = 51/326 (15%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W V+ A + R + R LQE G + L + + DGT K L +
Sbjct: 30 RGRQVFQW-VQQKAVQDWEEIRNIGAGDRQKLQE-GLFLQPLRKVKEQISQDGTRKFLFR 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE V + + K R T CVS+Q+GC + C+FCATG GG RNLS EI+GQV
Sbjct: 88 CTDGETIECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGLRRNLSPGEILGQV 147
Query: 150 LAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVG 202
L I I + +VTN+VFMGMGEP+LN +VL+A LN IG R +TIST G
Sbjct: 148 LDITYIMRQEDPDFQVTNIVFMGMGEPLLNYDAVLKAIELLNDRSGQGIGMRRMTISTSG 207
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW--------- 243
V I++LA Q LA+ D+ + EL E E+
Sbjct: 208 VAPKIRQLAKDNPQVGLAVSLHSAYDKTRDQLIPMNRRYPLAELMEACEEYTHLTNRRIT 267
Query: 244 -----------------------GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
G+ HVNLIP NP+ G+ RP K + FA LES
Sbjct: 268 FEMALISGQATPEAAEEAGHLLKGQLAHVNLIPVNPVAGTGMARPTPKEIQKFAQILESM 327
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQ 306
I S+R+ +G D AACGQLR + +
Sbjct: 328 GIPVSVREEKGTDIDAACGQLRRQLE 353
>gi|170288910|ref|YP_001739148.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
RQ2]
gi|205829920|sp|B1LAW7.1|RLMN_THESQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|170176413|gb|ACB09465.1| radical SAM enzyme, Cfr family [Thermotoga sp. RQ2]
Length = 343
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 147/275 (53%), Gaps = 55/275 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ DGT K L +LED IE+V + P R+TAC+S+QVGCP++C FCATG
Sbjct: 69 KKVSRIDGTTKFLWELEDGNTIESVMLF-----HPDRITACISTQVGCPVKCIFCATGMS 123
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
GF RNL++ EIV Q+L++E K ++ NVV+MGMGEP+LN ++ +++ R LN K IG
Sbjct: 124 GFVRNLTTGEIVAQILSMEREEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIG 183
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLA-------------------------------- 220
R ITISTVG+P+ I +LA L LA
Sbjct: 184 IRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEILNAVKI 243
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
+ G+ND++ A +LAE+L VNLIP NP D ++P +
Sbjct: 244 YQRKTGNRVTIEYVLIRGINDEISDAKKLAEILKNM--KIFVNLIPVNPT-AEDLKKPSR 300
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ +LAF L + I IR+ +G D AACGQLR
Sbjct: 301 ERLLAFKRILLENGIEAEIRREKGSDIEAACGQLR 335
>gi|257461212|ref|ZP_05626310.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
gi|257441586|gb|EEV16731.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
Length = 369
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 167/327 (51%), Gaps = 63/327 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP--- 109
+P+ R L + + + L R+ T++DG++K L L+D + IE+V +P++DE
Sbjct: 43 LPKEIRQSLAQ-NFYLDPLKCVRSETSSDGSIKYLFALKDGKTIESVLLPMKDELRDENE 101
Query: 110 -----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEI----FKHRV 160
R + CVSSQVGC + CSFC T KGGF RNL+ EIV Q+ I+++ ++ RV
Sbjct: 102 KIIRHARYSICVSSQVGCKIGCSFCLTAKGGFVRNLTPGEIVAQIWLIKKMNAIPYERRV 161
Query: 161 TNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQST 218
NVV+MGMGEP+ NL +V +A + L N + I R TIST G+ IKKL L
Sbjct: 162 -NVVYMGMGEPLNNLDNVAKAVQILKENDGLAIAPRRQTISTSGLSTQIKKLGEMDLGVL 220
Query: 219 LAIR---------------------------------------------SAGVNDQVEHA 233
LAI GVND+ A
Sbjct: 221 LAISLHAVDDELREKLMPINRAYNIASIMQAVREFPIDLRKRVMFEYLMIDGVNDRPSDA 280
Query: 234 VELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293
L +LLH G VNLI FNP EGS + RP + ++ F L +H IT +IRQ++GLD
Sbjct: 281 KTLVKLLH--GIRAKVNLIYFNPHEGSSFGRPSPENMIKFQDYLCAHGITCTIRQSKGLD 338
Query: 294 ASAACGQLRNEFQKSPLRIDSSNSSSE 320
SAACGQL+ ++ + SS S+ +
Sbjct: 339 ISAACGQLKQRNEQGKILAQSSISADK 365
>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
gi|205829772|sp|A1WXZ3.1|RLMN_HALHL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
SL1]
Length = 359
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 147/278 (52%), Gaps = 55/278 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT K +++L D +E V IP P R T C+SSQ GCP+ C+FCATG+GGFSR
Sbjct: 80 ASDGTRKWVVRLADGNCVEAVYIP-----EPKRGTLCISSQAGCPMGCTFCATGEGGFSR 134
Query: 139 NLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ--IGQRM 195
NL++ EIVGQV +A + + + +TN+VFMGMGEP+LN V+ A R D + +R
Sbjct: 135 NLTAAEIVGQVHVARQHLPEGAITNIVFMGMGEPLLNFDPVISASRVFTDDYGFVLSKRR 194
Query: 196 ITISTVGVPNTIKKLA--------------SYKLQSTLA--------------------- 220
+TIST GV + I+++ + +L++ L
Sbjct: 195 VTISTSGVVHAIERMQRVTDVSLAVSLHAPNNELRNQLVPLNRKNPLERLLPACHAYIAE 254
Query: 221 ----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
+ GVNDQ EHA EL + L G VNLIPFNP G+ Y R + V
Sbjct: 255 KPHRRITWEYVMLDGVNDQDEHARELLQRLR--GIPSKVNLIPFNPYPGARYGRTPDRQV 312
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
FA L H +T +IR+TRG D ACGQL E + +
Sbjct: 313 RRFADRLLEHGLTATIRETRGDDIDGACGQLVGEIRDA 350
>gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
Length = 347
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 160/303 (52%), Gaps = 60/303 (19%)
Query: 55 QSFRNDLQEAGWTVGRLP--IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ R DL + + LP + + T+ DGT K L +L+D + IE+V + +
Sbjct: 53 KDLREDL---AYKILILPPSLVKQETSKDGTRKFLWQLQDGQRIESVLLSHGNHN----- 104
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TAC+SSQVGCPL C+FCATGKGGF RNL+ EIVGQ LA+E+ +TN+VFMGMGEP+
Sbjct: 105 TACISSQVGCPLACAFCATGKGGFVRNLTPGEIVGQFLAMEKAAGQNITNIVFMGMGEPL 164
Query: 173 LNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAG----- 225
LN +++ ++ + LN K +G R +TIST G+ I+ L ++ L++ G
Sbjct: 165 LNQEALFKSIKILNHPKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHGTNDML 224
Query: 226 ----------------------------------------VNDQVEHAVELAELLHEWGR 245
VND E A ELA L++ G
Sbjct: 225 RNKLMPINQQYPLGSLIEALRDYQQKTGDRVTIEYVMIDRVNDNTEQAYELAALMN--GL 282
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
+VNLIP+NP++ + Y+R ++ + AF L I IR+ +G D +AACGQLR +
Sbjct: 283 SIYVNLIPYNPVDAT-YRRSSQERIKAFGKILSELNIEYEIRREKGSDINAACGQLRRQN 341
Query: 306 QKS 308
+KS
Sbjct: 342 EKS 344
>gi|419627032|ref|ZP_14159945.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|380607360|gb|EIB27227.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23263]
Length = 356
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 150/287 (52%), Gaps = 60/287 (20%)
Query: 74 FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLR 125
F+ + DG++K L +L D +E+V +P+++EK R T CVSSQVGC
Sbjct: 66 FKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSG 125
Query: 126 CSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAH 182
CSFC T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V +A
Sbjct: 126 CSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAV 185
Query: 183 RCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
+ L N + I R TIST G+ IK+L L LAI
Sbjct: 186 KILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKA 245
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255
G+ND++EHA EL +LL+ G VNLI FN
Sbjct: 246 YNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLILFN 303
Query: 256 PIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
P EGS Y+RP + + F L + +T +IR+++GLD SAACGQL+
Sbjct: 304 PHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLK 350
>gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175218|ref|YP_004652028.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479576|emb|CCB86174.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
Length = 350
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 155/293 (52%), Gaps = 59/293 (20%)
Query: 61 LQEAGWTVGRLPIFRTVTAAD-GTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
L ++ ++ L + +AD T K L +L+DN+L+E+V I D R T CVSSQ
Sbjct: 54 LLQSQISLSHLQLVHVKPSADLETYKFLWRLKDNKLVESVLICSGD-----RRTVCVSSQ 108
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLK 176
VGCP +C+FCA+GK GF RNL HEIV QV I + K RV++VV+MGMGEP+ N
Sbjct: 109 VGCPAKCAFCASGKQGFFRNLRPHEIVEQVFLINQWLKDKNERVSHVVYMGMGEPLKNYD 168
Query: 177 SVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA---------IRS-- 223
V+++ R L+ + + QR IT+STVG+ IK+L+ +L+ +L IR
Sbjct: 169 PVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLSLHAPNQHIRQKI 228
Query: 224 ----------------------------------AGVNDQVEHAVELAELLHEWGRGHH- 248
AG+ND +HA EL LLH G+
Sbjct: 229 IPYARKYPLDAIMEAMDEYAKLTKRDITFEYTLIAGINDHPDHAFELTHLLH--GKSQFT 286
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
VNLIP+NP+ G +RP KKA+ F L K+ + R T+G D +AACGQL
Sbjct: 287 VNLIPYNPVPGLRLKRPEKKAIKQFRAVLFGAKVVNTCRYTKGDDIAAACGQL 339
>gi|392426903|ref|YP_006467897.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfosporosinus
acidiphilus SJ4]
gi|391356866|gb|AFM42565.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfosporosinus
acidiphilus SJ4]
Length = 355
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 145/278 (52%), Gaps = 49/278 (17%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K L +L D +IE V + E+ R T CVS+QVGC + C+FCATG GF R
Sbjct: 69 SVDGTRKYLFRLHDGEMIECVLMDYAREQSRDRHTVCVSTQVGCAVGCAFCATGMEGFRR 128
Query: 139 NLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
NL+S EIVGQVL I + +VTN+VFMGMGEP+LN + VL A + +N K + I
Sbjct: 129 NLTSGEIVGQVLDITYFIRREDPDFQVTNIVFMGMGEPLLNYEEVLGAIKLMNQEKGLNI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLH 241
G R +TIST GV I +LA Q LA+ ND+ + +L E
Sbjct: 189 GMRRMTISTSGVVPQILQLAQENPQVGLAVSLHAANDRARSDLVPMNRRYSLAQLMEACR 248
Query: 242 EW--------------------------------GRGHHVNLIPFNPIEGSDYQRPYKKA 269
E+ G+ HVNLIP NP+ G+ +RP +
Sbjct: 249 EYSRITRRRVTFEVALTDDNANQTEAEDFVRLLKGQLGHVNLIPVNPVTGTGMKRPDLEK 308
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
+ FA LE+ I+ S+R+ RG D AACGQLR ++++
Sbjct: 309 LKTFARVLEAGGISVSVREERGTDIEAACGQLRRQWRE 346
>gi|167630204|ref|YP_001680703.1| radical sam enzyme, cfr family [Heliobacterium modesticaldum Ice1]
gi|205829773|sp|B0TGT1.1|RLMN_HELMI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|167592944|gb|ABZ84692.1| radical sam enzyme, cfr family, putative [Heliobacterium
modesticaldum Ice1]
Length = 385
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 147/302 (48%), Gaps = 55/302 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+PQ+ R L EAGW P R A DGT K L +L D LIE+V +P + R+
Sbjct: 78 LPQALRVRLGEAGWLKPLAP-ERHRVARDGTEKYLWRLADGELIESVLMPYRRAQTRDRV 136
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI-----EEIFKHRVTNVVFMG 167
T C+S+Q GCPL C FCATG+ GF RNL++ EIVGQVL I ++ +VTN+VFMG
Sbjct: 137 TVCLSTQAGCPLSCRFCATGRQGFRRNLTAAEIVGQVLDITHEKRKDDPDFKVTNLVFMG 196
Query: 168 MGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
MGEP LN +V A + IGQR IT+ST G+ I + A + LA+
Sbjct: 197 MGEPFLNYDNVRRAIGLFTHPEGQAIGQRRITVSTAGIVPGIDRFADEDWEVNLALSLHA 256
Query: 222 -----RS------------------------------------AGVNDQVEHAVELAELL 240
RS AGVND++E A LA L
Sbjct: 257 ADDKQRSEWMPVNDRFPLAQVLEACRRYWEKTRRRLSVEYALMAGVNDRLEDARRLASLF 316
Query: 241 HEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQ 300
W H+NLIP N + G +RP ++ F L + IR+ RG D AACGQ
Sbjct: 317 KGW--PIHLNLIPVNAVAGIGVRRPEREPTERFLAELRRWGVDAVIREERGQDIEAACGQ 374
Query: 301 LR 302
LR
Sbjct: 375 LR 376
>gi|419695637|ref|ZP_14223527.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23210]
gi|380677842|gb|EIB92702.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23210]
Length = 356
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 160/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHLSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|403253350|ref|ZP_10919651.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
gi|418045773|ref|ZP_12683868.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|81553682|sp|Q9X240.1|RLMN_THEMA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351676658|gb|EHA59811.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|402810884|gb|EJX25372.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
Length = 343
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 149/276 (53%), Gaps = 57/276 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ DGT K L +LED IE+V + P R+TAC+S+QVGCP++C FCATG
Sbjct: 69 KKVSRIDGTTKFLWELEDGNTIESVMLF-----HPDRITACISTQVGCPVKCIFCATGMS 123
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
GF RNL++ EIV Q+L++E+ K ++ NVV+MGMGEP+LN ++ +++ R LN K IG
Sbjct: 124 GFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIG 183
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLA-------------------------------- 220
R ITISTVG+P+ I +LA L LA
Sbjct: 184 IRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEILNAVKI 243
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP-IEGSDYQRPY 266
+ G+ND++ A +LAE+L VNLIP NP +EG +RP
Sbjct: 244 YQRKTGNRVTIEYVLIRGINDEISDAKKLAEILRNM--KVFVNLIPVNPTVEG--LRRPS 299
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
++ +L F L + I IR+ +G D AACGQLR
Sbjct: 300 RERLLTFKRILLENGIEAEIRREKGTDIEAACGQLR 335
>gi|407004067|gb|EKE20529.1| hypothetical protein ACD_7C00539G0003 [uncultured bacterium]
Length = 340
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 151/293 (51%), Gaps = 56/293 (19%)
Query: 57 FRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTAC 115
RN L+E + + L + + V++ D T K L +LED IETV I E K T C
Sbjct: 50 LRNKLKE-NFQLYSLTLKKEVSSKDKQTKKYLFQLEDGFFIETVLILSEKRK-----TLC 103
Query: 116 VSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNL 175
+S+QVGCP++C+FCA+GK GF RNL S+EI+ Q++ + + + T++VFMGMGEP+LNL
Sbjct: 104 LSTQVGCPIKCTFCASGKNGFYRNLKSYEILEQIIHVSKKISDKPTHIVFMGMGEPLLNL 163
Query: 176 KSVLEAHRCLNKDVQ--IGQRMITISTVGVPNTIKKLASYKLQSTLA------------- 220
+V+E+ ++ + I QR IT+STVG+ I+KL L+ LA
Sbjct: 164 DAVVESIEKISDKTKFNISQRRITVSTVGILENIRKLKERNLKVNLALSVHAPNDELRNK 223
Query: 221 --------------------------------IRSAGVNDQVEHAVELAELLHEWGRGHH 248
I +ND +EHA ELA LL
Sbjct: 224 IIPFSKKYKLKDLINELRLYFETTKRDISFEYILIDDLNDSIEHAKELAALLKNIQCS-- 281
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+NLIP+NPI+G Y++P V F L + S R T+G D +AACGQL
Sbjct: 282 INLIPYNPIDGFSYKKPNSAKVNKFKEYLACCNMVVSQRYTKGDDIAAACGQL 334
>gi|345303784|ref|YP_004825686.1| ribosomal RNA large subunit methyltransferase N [Rhodothermus
marinus SG0.5JP17-172]
gi|345113017|gb|AEN73849.1| Ribosomal RNA large subunit methyltransferase N [Rhodothermus
marinus SG0.5JP17-172]
Length = 362
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 168/327 (51%), Gaps = 59/327 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA+ + +P++FR +L + RL R +TA D TVK+L +
Sbjct: 28 RGRQLFKWIYGKGATSVEQMT-DLPRAFRTELARRAH-LTRLEPVRQLTAGDQTVKVLFR 85
Query: 90 LEDNRLIETVGIPVEDEKGPM--RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
L R IE+V IP DE+ RLT CVSSQVGC + C+FCATG GF +NL++ EI
Sbjct: 86 LPSGRHIESVLIPDFDEETVRVRRLTVCVSSQVGCAMGCAFCATGLMGFQQNLTAGEIYD 145
Query: 148 QVLAI----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTV 201
QV + EE F R+TNVV+MGMGEP+LN +V+ + L +G R IT+STV
Sbjct: 146 QVWQLNRLAEERFGRRITNVVYMGMGEPLLNYDAVIRSVALLTDRDGLGLSPRRITVSTV 205
Query: 202 GVPNTIKKLASYKLQSTLAI---------RSA---------------------------- 224
G+ I++LA ++ LA+ RSA
Sbjct: 206 GLARRIRQLADDGVRFRLAVSLHAPTNAQRSAIMPVNRNEQTDLDDLIDAIRYFEARTGQ 265
Query: 225 ----------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
G ND+ E A LA++ + VNLI +NP+EG + RP ++ + AF
Sbjct: 266 TITYEYCLFEGFNDRPEDAHRLADITEQA--PGKVNLILYNPVEGLPFHRPSEERLQAFI 323
Query: 275 GALESHKITTSIRQTRGLDASAACGQL 301
L +T ++R++RG D +AACGQL
Sbjct: 324 RVLVDRGVTVTVRRSRGQDINAACGQL 350
>gi|153951816|ref|YP_001398992.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. doylei 269.97]
gi|205829694|sp|A7H662.1|RLMN_CAMJD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|152939262|gb|ABS44003.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. doylei
269.97]
Length = 356
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDTEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L S +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419614948|ref|ZP_14148715.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H56]
gi|380592118|gb|EIB13040.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H56]
Length = 356
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRIMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419605971|ref|ZP_14140355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9860]
gi|380587560|gb|EIB08750.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9860]
Length = 356
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSTKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419543899|ref|ZP_14082871.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2553]
gi|419548249|ref|ZP_14086879.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2685]
gi|419559722|ref|ZP_14097376.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
86119]
gi|419609874|ref|ZP_14143951.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H8]
gi|380525952|gb|EIA51443.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2553]
gi|380527686|gb|EIA53042.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2685]
gi|380538029|gb|EIA62556.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
86119]
gi|380591254|gb|EIB12240.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H8]
Length = 356
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNNELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|315639331|ref|ZP_07894493.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
gi|315480657|gb|EFU71299.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
Length = 356
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P++ R +L + + L + + DG++K L +L+D IE+V +P+++EK
Sbjct: 46 LPKNLREELAK-NYHFEPLKCVKEERSKDGSIKYLFELKDGLRIESVLLPMKEEKFDGEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE---EIFKHRVT 161
+ T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I+ I R
Sbjct: 105 KRLSHAKFTICVSSQVGCRSGCSFCLTAKGGLKRNLSAGEIVGQILWIKRQNHIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NL +V +A R L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLNNVAKAVRILSHNDTLAISVRRQTISTSGLAKQIKELGEMNLGVLL 224
Query: 220 AI---------RSA------------------------------------GVNDQVEHAV 234
AI RS G+ND++EHA
Sbjct: 225 AISLHAVNDELRSKLMPINKAYNIASVMQAVREFPIDMRKKVMFEYLLIDGINDKIEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP +GS Y+RP + + F L +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHQGSIYKRPSLENAVKFQDLLSQKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|305432592|ref|ZP_07401753.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
gi|419535816|ref|ZP_14075308.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
111-3]
gi|419538306|ref|ZP_14077666.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
90-3]
gi|419554188|ref|ZP_14092334.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2698]
gi|419555706|ref|ZP_14093717.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
84-2]
gi|419562903|ref|ZP_14100392.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1091]
gi|419565007|ref|ZP_14102366.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1098]
gi|419565801|ref|ZP_14103071.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1148]
gi|419569561|ref|ZP_14106621.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
7--1]
gi|419572150|ref|ZP_14109081.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
132-6]
gi|419573632|ref|ZP_14110425.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1891]
gi|419575291|ref|ZP_14111984.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1909]
gi|419577397|ref|ZP_14113951.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
59-2]
gi|419578947|ref|ZP_14115369.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1948]
gi|419581235|ref|ZP_14117542.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1957]
gi|419584001|ref|ZP_14120152.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1961]
gi|419585431|ref|ZP_14121485.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
202/04]
gi|419591514|ref|ZP_14126862.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
37/05]
gi|419593565|ref|ZP_14128779.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9854]
gi|419594321|ref|ZP_14129450.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23336]
gi|419597018|ref|ZP_14132008.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23341]
gi|419598916|ref|ZP_14133788.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23342]
gi|419600294|ref|ZP_14135055.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23344]
gi|419604316|ref|ZP_14138786.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9853]
gi|419608467|ref|ZP_14142657.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H6]
gi|304444303|gb|EFM36955.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
gi|380518399|gb|EIA44495.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
90-3]
gi|380519766|gb|EIA45828.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
111-3]
gi|380533215|gb|EIA58166.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2698]
gi|380535824|gb|EIA60501.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
84-2]
gi|380539701|gb|EIA64055.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1091]
gi|380540635|gb|EIA64933.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1098]
gi|380548334|gb|EIA72242.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1148]
gi|380549197|gb|EIA73076.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
7--1]
gi|380551009|gb|EIA74628.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1891]
gi|380551913|gb|EIA75488.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
132-6]
gi|380553915|gb|EIA77410.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1909]
gi|380557406|gb|EIA80620.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
59-2]
gi|380558434|gb|EIA81613.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1948]
gi|380559776|gb|EIA82913.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1957]
gi|380561384|gb|EIA84322.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1961]
gi|380562142|gb|EIA85028.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
202/04]
gi|380568105|gb|EIA90588.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
37/05]
gi|380569878|gb|EIA92311.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9854]
gi|380574533|gb|EIA96633.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23341]
gi|380576278|gb|EIA98335.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23336]
gi|380576655|gb|EIA98707.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23342]
gi|380580393|gb|EIB02147.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9853]
gi|380583194|gb|EIB04767.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23344]
gi|380585424|gb|EIB06778.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H6]
Length = 356
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419693358|ref|ZP_14221349.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9872]
gi|380672777|gb|EIB87925.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9872]
Length = 356
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L S +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419612218|ref|ZP_14146099.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H9]
gi|380590876|gb|EIB11878.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H9]
Length = 356
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRTFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|410697864|gb|AFV76932.1| 23S rRNA m2A2503 methyltransferase [Thermus oshimai JL-2]
Length = 363
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 148/297 (49%), Gaps = 54/297 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ R L + W + + + DG+VK L L D + E V +P E+ K
Sbjct: 54 LPKGLREALAQE-WRISEFALVEAYPSRDGSVKYLFTLLDGKKTEAVYMPYENRK----- 107
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+SS VGCP C+FCATG GF RNL++ EI+ Q+LAI + I + NVV MGMG
Sbjct: 108 TVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILDQLLAIAYHQGISPREIRNVVLMGMG 167
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227
EP+LNL +VL+A R L K + + R IT+STVG+P I +LA L LA+ +
Sbjct: 168 EPLLNLTNVLKAVRTLLHPKGLAMSPRRITLSTVGIPRGIYRLAEEDLGIRLALSLHAPD 227
Query: 228 DQVE-------HAVELAELL--------------------------HEW----------G 244
D+ H +AE++ H W G
Sbjct: 228 DETRKKIIPTAHRYPIAEIMEAVRAYYAKTKRRVTFEYTLLQGLNDHPWQARLLSRLLKG 287
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
HVNLIPFNP G+ + K +LAFA L+ I TS+R +RG D AACGQL
Sbjct: 288 LSAHVNLIPFNPWPGAPVKGTPKAGILAFAEELKRQGIPTSVRFSRGQDVGAACGQL 344
>gi|205355727|ref|ZP_03222497.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346504|gb|EDZ33137.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 335
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 25 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 83
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 84 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 143
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 144 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 203
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 204 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 263
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 264 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 321
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 322 SAACGQLK 329
>gi|419633586|ref|ZP_14166018.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|380611834|gb|EIB31376.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23269]
Length = 356
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISYARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|157415935|ref|YP_001483191.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
81116]
gi|384442290|ref|YP_005658593.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni M1]
gi|415747190|ref|ZP_11475873.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
327]
gi|419635016|ref|ZP_14167336.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 55037]
gi|205829693|sp|A8FP27.1|RLMN_CAMJ8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157386899|gb|ABV53214.1| hypothetical protein C8J_1617 [Campylobacter jejuni subsp. jejuni
81116]
gi|307748573|gb|ADN91843.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni M1]
gi|315931319|gb|EFV10288.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
327]
gi|380613597|gb|EIB33068.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 55037]
Length = 356
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 148/282 (52%), Gaps = 60/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLRCSFCA 130
+ DG++K L +L D +E+V +P+++EK R T CVSSQVGC CSFC
Sbjct: 71 SKDGSIKYLFELVDGLRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCL 130
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL-- 185
T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V +A + L
Sbjct: 131 TAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQ 190
Query: 186 NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------------------- 222
N + I R TIST G+ IK+L L LAI
Sbjct: 191 NDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDGLRTELMPINKAYNIAA 250
Query: 223 ----------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
G+ND++EHA EL +LL+ G VNLI FNP EGS
Sbjct: 251 IMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLILFNPHEGS 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y+RP + + F L S +T +IR+++GLD SAACGQL+
Sbjct: 309 LYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLK 350
>gi|320451516|ref|YP_004203612.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
gi|320151685|gb|ADW23063.1| radical SAM enzyme, Cfr family [Thermus scotoductus SA-01]
Length = 349
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 147/297 (49%), Gaps = 54/297 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ FR L W + + + DG+VK L L D + E V +P E+ K
Sbjct: 40 LPKGFREALA-GEWRISEFALVEAYPSRDGSVKYLFTLLDGKKTEAVYMPYENRK----- 93
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+SS VGCP C+FCATG GF RNL++ EI+ Q+LAI + I + NVV MGMG
Sbjct: 94 TVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLLAIAHHQGISPRDIRNVVLMGMG 153
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227
EP+LNL +VL+A R + K + + R IT+STVG+P I +LA L LA+ +
Sbjct: 154 EPLLNLGNVLKAIRTMLHPKGLAMSPRRITLSTVGIPKGIHRLAEEDLGVRLALSLHAPD 213
Query: 228 DQVE-------HAVELAELL--------------------------HEW----------G 244
D+ H + E+L H W G
Sbjct: 214 DETRRKIIPTAHRYSVGEILEAVRHYYARTKRRVTFEYTLLKGLNDHPWQARLLAKLLKG 273
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
HVNLIPFNP EG+ + K +LAFA L I TSIR +RG D AACGQL
Sbjct: 274 ISAHVNLIPFNPWEGAPVEGTPKAGILAFAEELRRLGIPTSIRFSRGQDVGAACGQL 330
>gi|148926804|ref|ZP_01810483.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|419646717|ref|ZP_14178178.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 53161]
gi|419660634|ref|ZP_14191078.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|419666918|ref|ZP_14196906.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|419679604|ref|ZP_14208589.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87459]
gi|145844529|gb|EDK21636.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|380623195|gb|EIB41912.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 53161]
gi|380635918|gb|EIB53671.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|380646953|gb|EIB63889.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|380656846|gb|EIB72979.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87459]
Length = 356
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|325290448|ref|YP_004266629.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
DSM 8271]
gi|324965849|gb|ADY56628.1| 23S rRNA m(2)A-2503 methyltransferase [Syntrophobotulus glycolicus
DSM 8271]
Length = 351
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 142/287 (49%), Gaps = 53/287 (18%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
L I + + DGT K L +L D IETV + E + R T CVS+QVGCP+ C FCA
Sbjct: 66 LEIVKEQVSKDGTRKFLFRLPDGERIETVLMDYEKDLSRNRETVCVSTQVGCPVGCPFCA 125
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
TG GF RNLS+ EI GQVL I + VTN+VFMGMGEP LN +SVL+A R L
Sbjct: 126 TGVNGFHRNLSAGEITGQVLEIVRRMRINDPSFNVTNIVFMGMGEPFLNEESVLKAVRIL 185
Query: 186 NKD--VQIGQRMITISTVGVPNTIKKLAS----------------------------YKL 215
N + +IG R +TIST GV I +LA Y L
Sbjct: 186 NSENGQKIGMRRMTISTSGVVPGIIRLAEENKQVGLAISLHSARNHLRDILVPMNRRYPL 245
Query: 216 QS----------------TLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
Q TL I N + A L L+ G H+NLIP NP+
Sbjct: 246 QQLMRACREYVNQTGRRVTLEIALTEANANKDEAEALIRLIQ--GMPVHINLIPVNPVTE 303
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
S QRP K+ ++ F LE+ ++ ++R+ +G D AACGQLR +
Sbjct: 304 SSMQRPAKEKIMEFKTLLEAKNLSVTVREEKGTDIDAACGQLRQRLE 350
>gi|222099877|ref|YP_002534445.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
neapolitana DSM 4359]
gi|254807220|sp|B9K7Z6.1|RLMN_THENN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
Length = 343
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 145/275 (52%), Gaps = 55/275 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ DGT K L +LED IE+V I P R+TAC+S+QVGCP+ C+FCATG
Sbjct: 69 KRVSKIDGTTKFLWELEDGNTIESVMIF-----HPGRITACISTQVGCPVGCTFCATGMS 123
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
GF RNL++ EIV Q+L++E+ ++ NVV+MGMGEP+LN ++ +++ R LN K IG
Sbjct: 124 GFVRNLTTGEIVSQILSMEKEEGKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIG 183
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLA-------------------------------- 220
R ITISTVG+P I +LA L LA
Sbjct: 184 IRRITISTVGIPEKIIQLADEGLDVKLALSLHAPTNFKRDQLVPLNRKYSVEEILNAIKV 243
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
+ GVND++ A +LAE+L G VNLIP NP +P +
Sbjct: 244 YQMKTGKRVTIEYVLIRGVNDEISDAKKLAEILK--GLKVFVNLIPVNPTVAG-LSKPSR 300
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ +LAF L + I IRQ +G D AACGQLR
Sbjct: 301 QRILAFKRILLENGIEAEIRQEKGSDIEAACGQLR 335
>gi|374997152|ref|YP_004972651.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Desulfosporosinus orientis
DSM 765]
gi|357215518|gb|AET70136.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus orientis DSM
765]
Length = 354
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 145/285 (50%), Gaps = 49/285 (17%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
L R + DGT K L +LED IE V + E R T CVS+QVGCP+ C+FCA
Sbjct: 66 LEKLREQRSHDGTRKYLFRLEDGETIECVLMDYERRSSRDRHTVCVSTQVGCPVGCAFCA 125
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCL 185
TG GF RNLS EIV QVL I + +VTN+VFMGMGEP+LN VL+A + L
Sbjct: 126 TGLEGFRRNLSCAEIVSQVLDITYFVRQEDPDFQVTNIVFMGMGEPLLNYDEVLKAIKLL 185
Query: 186 NKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVND-QVEHAV-------- 234
N D ++IG R +T+ST GV I +LA Q LA+ +D + H +
Sbjct: 186 NHDQGLKIGMRRMTVSTSGVVPNIIQLAKDNPQVGLAVSLHAADDLKRNHLIPMNRRYPL 245
Query: 235 --------ELAELLHEW-------------------------GRGHHVNLIPFNPIEGSD 261
E ++ H G+ HVNLIP NP+ G+
Sbjct: 246 SQLMRACQEYTDITHRRITFEVALTAENAGEEAALALAGVLKGQLGHVNLIPVNPVTGTG 305
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
RP ++ + FA LES I+ S+R+ +G D AACGQLR +++
Sbjct: 306 MLRPEQEKIKRFAQVLESAGISVSLREEKGTDIDAACGQLRRQWE 350
>gi|157736328|ref|YP_001489011.1| ribosomal RNA large subunit methyltransferase N [Arcobacter
butzleri RM4018]
gi|205829660|sp|A8EQW8.1|RLMN_ARCB4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157698182|gb|ABV66342.1| conserved hypothetical protein, radical SAM enzyme, Cfr family
[Arcobacter butzleri RM4018]
Length = 360
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 164/331 (49%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + AS + + +P+ DL+E + + + I + + DG++K L K
Sbjct: 26 RAKQVYNWLYKKYAS-SYDEMKNLPKELVEDLKE-NYPIDIMQIVKKEQSRDGSIKYLFK 83
Query: 90 LEDNRLIETVGIPVEDEK----GPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L DN +E V + ++D+K G + + T C+SSQVGC + CSFC T KGGF RNL+
Sbjct: 84 LRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLT 143
Query: 142 SHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMI 196
E + Q++ I+ +I +++ N+V+MGMGEP+ N + +A ++ + I +R
Sbjct: 144 VGEYIAQIVNIKRDNDIAENKALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQ 203
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------------ 226
T+ST G+ IKKL LQ LAI V
Sbjct: 204 TVSTSGIATKIKKLGEKDLQIQLAISLHAVDDELRSELIPMNKAYNIASIIQAVKAFPVD 263
Query: 227 ---------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
ND +E A +L LL+ G VNLI FNP G+ YQRP +K +L
Sbjct: 264 TRKKVMFEYLVIKDKNDSIEAAKKLVSLLN--GIQAKVNLIYFNPYPGTSYQRPQEKDML 321
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L + +IR+++GLD SAACGQL+
Sbjct: 322 KFKDFLNQKGVICTIRESKGLDISAACGQLK 352
>gi|315635461|ref|ZP_07890727.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
gi|315480219|gb|EFU70886.1| cfr family radical SAM enzyme [Arcobacter butzleri JV22]
Length = 360
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 164/331 (49%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + AS + + +P+ DL+E + + + I + + DG++K L K
Sbjct: 26 RAKQVYNWLYKKYAS-SYDEMKNLPKELVEDLKE-NYPIDIMQIVKKEQSRDGSIKYLFK 83
Query: 90 LEDNRLIETVGIPVEDEK----GPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L DN +E V + ++D+K G + + T C+SSQVGC + CSFC T KGGF RNL+
Sbjct: 84 LRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLT 143
Query: 142 SHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMI 196
E + Q++ I+ +I +++ N+V+MGMGEP+ N + +A ++ + I +R
Sbjct: 144 VGEYIAQIVNIKRDNDIAENKALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQ 203
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------------ 226
T+ST G+ IKKL LQ LAI V
Sbjct: 204 TVSTSGIATKIKKLGEKDLQIQLAISLHAVDDELRSELIPMNKAYNIASIIEAVKAFPVD 263
Query: 227 ---------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
ND +E A +L LL+ G VNLI FNP G+ YQRP +K +L
Sbjct: 264 TRKKVMFEYLVIKDKNDSIEAAKKLVSLLN--GIQAKVNLIYFNPYPGTSYQRPQEKDML 321
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L + +IR+++GLD SAACGQL+
Sbjct: 322 KFKDFLNQKGVICTIRESKGLDISAACGQLK 352
>gi|419567654|ref|ZP_14104809.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1417]
gi|380547798|gb|EIA71714.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1417]
Length = 356
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK++ L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKEMGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|323453959|gb|EGB09830.1| hypothetical protein AURANDRAFT_12530, partial [Aureococcus
anophagefferens]
Length = 323
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 155/303 (51%), Gaps = 59/303 (19%)
Query: 53 VPQSFRNDLQEAGWTVG----RLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG 108
+P+ FR+DL+ G TVG +L + V+ DGT+K + D ++E+V +P ED
Sbjct: 26 LPKKFRDDLKARGATVGGTIAKLRV-EQVSQRDGTIKRAYEFRDGSVVESVLMPYEDG-- 82
Query: 109 PMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVF 165
R TAC+SSQ GC + C+FCATG+ G +R+L++ EI Q R++NVVF
Sbjct: 83 --RRTACISSQAGCGMGCTFCATGQMGLTRHLTAAEIFEQAARFSRELSARGERLSNVVF 140
Query: 166 MGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
MGMGEP+ N K+V+ A R +N ++ +G R ITISTVG+ I KLA LQ TLA+
Sbjct: 141 MGMGEPLANYKNVMAAARRINDELGVGARHITISTVGLARGIGKLAEDPLQVTLAVSLHQ 200
Query: 222 -----RS------------------------------------AGVNDQVEHAVELAELL 240
RS AG ND V+ A L LL
Sbjct: 201 ATDAARSAIMPVNDRYDLETLLGAVRDYQAATRRRVTFEWAAIAGENDDVDAARTLGALL 260
Query: 241 HEWG-RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH-KITTSIRQTRGLDASAAC 298
+ G R HVN+IP NP +G +R AV F LE+ ++ + R RG+D A C
Sbjct: 261 KKHGIRDAHVNVIPLNPTKGYGGKRAKNGAVDRFCKTLEAEFGVSATPRVRRGIDIDAGC 320
Query: 299 GQL 301
GQL
Sbjct: 321 GQL 323
>gi|384440606|ref|YP_005655330.1| ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
gi|359291739|gb|AEV17256.1| Ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
Length = 358
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 155/317 (48%), Gaps = 57/317 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L W + + + DG+VK L L D + E V +P E+ K
Sbjct: 49 LPRALREALARE-WRISEFALAEAYPSQDGSVKYLFTLLDGKKTEAVYMPYENRK----- 102
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+SS VGCP C+FCATG GF RNL++ EI+ Q+LAI + I + N V MGMG
Sbjct: 103 TVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLLAIAHHQGISPREIRNAVLMGMG 162
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227
EP+LNL VL+A R + K + + R IT+STVG+P I +LA L LA+ +
Sbjct: 163 EPLLNLTQVLKAVRLMLHPKGLAMSPRRITLSTVGIPRGIYRLAEEDLGVRLALSLHAPD 222
Query: 228 DQVE-------HAVELAELL--------------------------HEW----------G 244
D+ H +AE+L H W G
Sbjct: 223 DETRRRIIPTAHRYPMAEILEAVRHYYAKTKRRITFEYTLLQGVNDHPWQARLLARLLQG 282
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
HVNLIPFNP EG+ + + +LAFA L + TSIR +RG D AACGQL
Sbjct: 283 ISAHVNLIPFNPWEGAPVKGTPRAGILAFAQELRRLGVPTSIRWSRGRDVGAACGQLA-- 340
Query: 305 FQKSPLRIDSSNSSSES 321
K+PL +D S ++
Sbjct: 341 -LKAPLALDFRPSLEDA 356
>gi|419640901|ref|ZP_14172818.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23357]
gi|380618783|gb|EIB37897.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23357]
Length = 356
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 151/282 (53%), Gaps = 60/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLRCSFCA 130
+ DG++K L +L D +E+V +P+++EK R T CVSSQVGC CSFC
Sbjct: 71 SKDGSIKYLFELVDGLRVESVLLPMKEEKIDTEGKRISHARYTICVSSQVGCKSGCSFCL 130
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL-- 185
T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V +A + L
Sbjct: 131 TAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQ 190
Query: 186 NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------ 224
N+ + I R TIST G+ IK+L L LAI R+
Sbjct: 191 NEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAA 250
Query: 225 ------------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
G+ND++EHA EL +LL+ G VNLI FNP EGS
Sbjct: 251 IMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLILFNPHEGS 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y+RP + + F L + +T +IR+++GLD SAACGQL+
Sbjct: 309 LYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLK 350
>gi|423074031|ref|ZP_17062765.1| 23S rRNA m2A2503 methyltransferase [Desulfitobacterium hafniense
DP7]
gi|361855125|gb|EHL07127.1| 23S rRNA m2A2503 methyltransferase [Desulfitobacterium hafniense
DP7]
Length = 354
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 160/326 (49%), Gaps = 51/326 (15%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W V+ A + R + R LQE G + L + + DGT K L +
Sbjct: 27 RGRQVFQW-VQQKAVQNWEELRNIGAGDRQKLQE-GLFLQPLRKVKAQISQDGTRKFLFR 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +E V + + K R T CVS+Q+GC + C+FCATG GG+ RNLS EI+GQV
Sbjct: 85 CADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQV 144
Query: 150 LAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
L I + + +VTN+VFMGMGEP+LN ++VL+A LN + IG R +TIST G
Sbjct: 145 LDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSG 204
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW--------- 243
V I++LA Q LA+ ++ + EL E ++
Sbjct: 205 VAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACRDYTTLTNRRIT 264
Query: 244 -----------------------GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
G+ HVNLIP NP+ G+ RP K V FA +LES
Sbjct: 265 FEIALISGQATLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESM 324
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQ 306
I S+R+ +G D AACGQLR + +
Sbjct: 325 GIPVSVREEKGTDIDAACGQLRRQLE 350
>gi|283956169|ref|ZP_06373654.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
1336]
gi|283792323|gb|EFC31107.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
1336]
Length = 356
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 356
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRI 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L S +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419540082|ref|ZP_14079324.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z163]
gi|419616265|ref|ZP_14149914.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z156]
gi|380517774|gb|EIA43881.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z163]
gi|380595932|gb|EIB16650.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z156]
Length = 356
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R T+ST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTLSTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRIMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419586319|ref|ZP_14122282.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
67-8]
gi|419603218|ref|ZP_14137776.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
151-9]
gi|380566181|gb|EIA88863.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
67-8]
gi|380579260|gb|EIB01061.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
151-9]
Length = 356
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R T+ST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTLSTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|86150562|ref|ZP_01068786.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86154131|ref|ZP_01072330.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597741|ref|ZP_01100974.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
84-25]
gi|317510835|ref|ZP_07968218.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
305]
gi|384448923|ref|YP_005656974.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|407943044|ref|YP_006858691.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni PT14]
gi|419623892|ref|ZP_14157013.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|419631454|ref|ZP_14164040.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|419636670|ref|ZP_14168862.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|419638460|ref|ZP_14170521.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 86605]
gi|419650458|ref|ZP_14181677.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|419655889|ref|ZP_14186725.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|419661704|ref|ZP_14192024.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|419663110|ref|ZP_14193313.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|419669047|ref|ZP_14198846.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|419672295|ref|ZP_14201867.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|419675380|ref|ZP_14204648.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 110-21]
gi|419676887|ref|ZP_14206050.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87330]
gi|419684384|ref|ZP_14212985.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1577]
gi|419688885|ref|ZP_14217196.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1854]
gi|424848983|ref|ZP_18273452.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni D2600]
gi|85839014|gb|EAQ56279.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85842371|gb|EAQ59587.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88190045|gb|EAQ94021.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
84-25]
gi|284926904|gb|ADC29256.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315929674|gb|EFV08851.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
305]
gi|356487620|gb|EHI17562.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni D2600]
gi|380600042|gb|EIB20390.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|380610695|gb|EIB30276.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|380617086|gb|EIB36269.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|380618652|gb|EIB37770.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 86605]
gi|380628453|gb|EIB46764.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|380636327|gb|EIB54040.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|380639504|gb|EIB56991.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|380643581|gb|EIB60803.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|380646488|gb|EIB63452.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|380648069|gb|EIB64944.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|380651756|gb|EIB68282.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 110-21]
gi|380655562|gb|EIB71875.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87330]
gi|380664429|gb|EIB80030.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1854]
gi|380667102|gb|EIB82578.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1577]
gi|407906882|gb|AFU43711.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni PT14]
Length = 356
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419629559|ref|ZP_14162281.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 60004]
gi|380607913|gb|EIB27759.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 60004]
Length = 356
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLKVESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|429221092|ref|YP_007182736.1| 2-vinyl bacteriochlorophyllide hydratase [Deinococcus
peraridilitoris DSM 19664]
gi|429131955|gb|AFZ68970.1| 23S rRNA m2A2503 methyltransferase [Deinococcus peraridilitoris DSM
19664]
Length = 344
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 164/326 (50%), Gaps = 66/326 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R RQ W GA +P + R++L + +T TV+++DG+VK L
Sbjct: 18 RRRQLLEWVFEHGAPSFEAMTN-LPATLRSELADQ-YTFDPFLGIETVSSSDGSVKYLFT 75
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D + +E V +P D R T CVS+ VGCP +C+FCATG GF RNL++ EIVGQV
Sbjct: 76 LPDLKQMEAVYMPYLD-----RRTICVSTMVGCPAKCAFCATGALGFGRNLTAGEIVGQV 130
Query: 150 LAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVP 204
LA+ + + + N+VFMGMGEP+LN V+ A R L + +G +R +T+STVG+P
Sbjct: 131 LAVARGQGVAPREIRNLVFMGMGEPLLNYDHVMLASRILLHEHGLGMSKRRVTLSTVGLP 190
Query: 205 NTIKKLASYKLQSTLAIRSA---------------------------------------- 224
I+KLA+ + L I+ A
Sbjct: 191 RGIRKLAA---EDDLGIKLAISLHAPDEETRQRIIPTAHANTIAEIMASAREYQAVTGRR 247
Query: 225 ---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
VNDQ+ A LA+LL G HVNLIP NP +GS + ++ + AF
Sbjct: 248 VTFEYAMLRDVNDQLWQADLLADLLR--GLVSHVNLIPMNPWDGSGFLESSEQQLQAFYD 305
Query: 276 ALESHKITTSIRQTRGLDASAACGQL 301
LE+ + S+R++RG DA AACGQL
Sbjct: 306 RLEARGVEVSVRRSRGRDAGAACGQL 331
>gi|384154769|ref|YP_005537584.1| hypothetical protein [Arcobacter butzleri ED-1]
gi|345468323|dbj|BAK69774.1| conserved hypothetical protein [Arcobacter butzleri ED-1]
Length = 360
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 164/331 (49%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + AS + + +P+ DL+E + + + I + + DG++K L K
Sbjct: 26 RAKQVYNWLYKKYAS-SYDEMKNLPKELVEDLKE-NYPIDIMQIVKKEQSRDGSIKYLFK 83
Query: 90 LEDNRLIETVGIPVEDEK----GPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L DN +E V + ++D+K G + + T C+SSQVGC + CSFC T KGGF RNL+
Sbjct: 84 LRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLT 143
Query: 142 SHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMI 196
E + Q++ I+ +I +++ N+V+MGMGEP+ N + +A ++ + I +R
Sbjct: 144 VGEYIAQIVNIKRDNDIAENKALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQ 203
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------------ 226
T+ST G+ IKKL LQ LAI V
Sbjct: 204 TVSTSGIATKIKKLGEKDLQIQLAISLHAVDDELRSELIPMNKAYNIASIIEAVKAFPVD 263
Query: 227 ---------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
ND +E A +L LL+ G VNLI FNP G+ YQRP +K +L
Sbjct: 264 TRKKVMFEYLVIKDKNDSIEAAKKLVSLLN--GIQAKVNLIYFNPYPGTSYQRPQEKDML 321
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L + +IR+++GLD SAACGQL+
Sbjct: 322 KFKDFLNQKGVICTIRESKGLDISAACGQLK 352
>gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
petrophila RKU-1]
gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
gi|205829917|sp|A5ILF6.1|RLMN_THEP1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1]
gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
Length = 343
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 146/275 (53%), Gaps = 55/275 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ DGT K L +LED IE+V + P R+TAC+S+QVGCP++C FCATG
Sbjct: 69 KKVSRIDGTTKFLWELEDGNTIESVMLF-----HPDRITACISTQVGCPVKCIFCATGMS 123
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
GF RNL++ EIV Q+L++E+ K ++ NVV+MGMGEP+LN ++ +++ R LN K IG
Sbjct: 124 GFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRTLNHKKMGNIG 183
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLA-------------------------------- 220
R ITISTVG+P+ I +LA L LA
Sbjct: 184 IRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEILNAVKI 243
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
+ G+ND++ A +LAE+L VNLIP NP D ++P +
Sbjct: 244 YQKKTGNRVTIEYVLIKGMNDEISDAKKLAEILKNM--KVFVNLIPVNPT-VEDLKKPSR 300
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ +L F L I IR+ +G D AACGQLR
Sbjct: 301 ERLLTFKRILLESGIEAEIRREKGADIEAACGQLR 335
>gi|187734933|ref|YP_001877045.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
gi|205829710|sp|B2UNF2.1|RLMN_AKKM8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|187424985|gb|ACD04264.1| radical SAM enzyme, Cfr family [Akkermansia muciniphila ATCC
BAA-835]
Length = 359
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 145/272 (53%), Gaps = 48/272 (17%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPV---EDEKGPMRLTACVSSQVGCPLRCSFCATGKGG 135
+AD T K L K+ED L+E+V IP E+ + R+T CVSSQVGC C FCA+G G
Sbjct: 75 SADTTRKFLTKMEDGSLVESVIIPAAAAENGEKSERVTLCVSSQVGCAFGCKFCASGLLG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQ 193
R+L++ EI+GQ+L+ E I RV N+VFMGMGEP+ N ++ +A + ++ ++IG
Sbjct: 135 LKRHLTTGEIIGQILSAEAIAGKRVNNIVFMGMGEPLSNFDNLADALEIITSHRGLEIGA 194
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW 243
R ITIST G +KKLA+Y Q LA+ G D+V + +L L EW
Sbjct: 195 RHITISTSGFVPGLKKLAAYPRQIRLAVSLHGATDEVRDQIMPVNKKWPLSQLIPALEEW 254
Query: 244 GRGHH---------------------------------VNLIPFNPIEGSDYQRPYKKAV 270
RG + VNLIP+N +EG ++RP ++
Sbjct: 255 NRGRNQMPTLEYILIRDINDSPKDASHLVRIAKRLHAKVNLIPYNTVEGLPWKRPSEERC 314
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+F A+ +I ++R +G D +AACGQLR
Sbjct: 315 RSFRDAVHKARIPVTMRYEKGHDINAACGQLR 346
>gi|57504577|ref|ZP_00370689.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
gi|419546291|ref|ZP_14085050.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2680]
gi|419549981|ref|ZP_14088503.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2688]
gi|419557516|ref|ZP_14095424.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
80352]
gi|57019472|gb|EAL56166.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
gi|380522705|gb|EIA48375.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2680]
gi|380531757|gb|EIA56767.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2688]
gi|380541960|gb|EIA66205.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
80352]
Length = 356
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R + CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYSICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|406980657|gb|EKE02230.1| hypothetical protein ACD_20C00410G0016 [uncultured bacterium]
Length = 343
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 154/317 (48%), Gaps = 52/317 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + + + + + FR L E + I + + + DGT+K L++
Sbjct: 31 RAKQLHYWLYKKSVPEFDQMSN-LSKEFRAKLNEIAQ-ISDTKIKQRLISKDGTIKYLLE 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D ++ETV + ++ LTACVSSQ+GCP++C FCATG+ G RNLS+ EIV Q+
Sbjct: 89 FPDGNVVETVLMRFDNRPN---LTACVSSQIGCPVKCVFCATGEKGLIRNLSAKEIVDQI 145
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L I+ VTNVV+MG GEP+LNL VL++ LN +++IG R ITIST G+ I K
Sbjct: 146 LTIQRDTGLIVTNVVYMGQGEPLLNLDEVLKSLHVLNSELEIGMRRITISTSGIAPQIYK 205
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA Q TLA+
Sbjct: 206 LADENRQLTLALSLHAPNHELREKLIPIEKKYHIEEVIKALHFLTSKTGRRVTIEYVLIE 265
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
G+ND EHA E+ LL G ++NLIP+N + D++ K + F LE
Sbjct: 266 GINDSPEHAEEIISLLK--GLNCNINLIPYNSLNRKDFKTSSPKKINMFKYILEQSGKKV 323
Query: 285 SIRQTRGLDASAACGQL 301
++R RG D AACGQL
Sbjct: 324 TVRLERGSDILAACGQL 340
>gi|419541896|ref|ZP_14081033.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2548]
gi|419552205|ref|ZP_14090519.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2692]
gi|380524248|gb|EIA49866.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2548]
gi|380532098|gb|EIA57093.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2692]
Length = 356
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + L + + DG++K L +L D IE+V +P++ DE+G
Sbjct: 46 LPKDLRLELAQT-YHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDEEG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ I++L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIEELGEMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|218563299|ref|YP_002345079.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
gi|403056421|ref|YP_006633826.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
gi|415733959|ref|ZP_11474423.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|123042659|sp|Q0P7R8.1|RLMN_CAMJE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|112361006|emb|CAL35807.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|315926640|gb|EFV06020.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|401782073|emb|CCK67784.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
Length = 356
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 149/282 (52%), Gaps = 60/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLRCSFCA 130
+ DG++K L +L D +E+V +P+++EK R T CVSSQVGC CSFC
Sbjct: 71 SKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCL 130
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL-- 185
T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V +A + L
Sbjct: 131 TAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQ 190
Query: 186 NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------------------- 222
N+ + I R TIST G+ IK+L L LAI
Sbjct: 191 NEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAA 250
Query: 223 ----------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
G+ND++EHA EL +LL+ G VNLI FNP EGS
Sbjct: 251 IMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLILFNPHEGS 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y+RP + + F L + +T +IR+++GLD SAACGQL+
Sbjct: 309 LYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLK 350
>gi|339446353|ref|YP_004712357.1| hypothetical protein EGYY_30040 [Eggerthella sp. YY7918]
gi|338906105|dbj|BAK45956.1| hypothetical protein EGYY_30040 [Eggerthella sp. YY7918]
Length = 344
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 160/329 (48%), Gaps = 66/329 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIF------RTVTAADGT 83
R +Q A W + A + + +P S R+ L + R P+F R+++ DGT
Sbjct: 27 RAKQLAEW-LYARHACSYDEMTNLPASLRSTLNQ------RFPLFAPKIIERSISQ-DGT 78
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
K LI+ D L+ETVGIP D + RLT C S+Q GCP+ C+FCATGK GF RNL+
Sbjct: 79 RKYLIRFGDGVLVETVGIPSRDNQ---RLTVCFSTQAGCPMACAFCATGKEGFVRNLTPG 135
Query: 144 EIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTV 201
EIV QVL ++E F RV+NVV MG GEP LN + L A LN + V IG R +++ST
Sbjct: 136 EIVDQVLVVQEDFGTRVSNVVGMGQGEPFLNYDNTLAALHILNDENLVGIGSRRMSVSTC 195
Query: 202 GVPNTIKKLASYKLQSTLAI---------RSA---------------------------- 224
G+ I++ A Q TLAI R A
Sbjct: 196 GIIPGIERFAGEPEQFTLAISIHSAVQHVRDALMPNVARYSIPDLKRALKHYVQKTNRRV 255
Query: 225 --------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
VND E + G HVNLI N I+ S Q K+ + + A
Sbjct: 256 TLEYLMIRDVNDSEEDLAAFKDFCS--GLLCHVNLIAMNNIDDSPLQPSDKRTIEQWISA 313
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEF 305
L++ I T++R +RG D + ACGQL+N F
Sbjct: 314 LQAQNIETTLRDSRGSDIAGACGQLKNTF 342
>gi|419697890|ref|ZP_14225617.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23211]
gi|380676920|gb|EIB91796.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23211]
Length = 356
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEKIDTEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIRSAGVNDQ---------------------------------------------VEHAV 234
AI VND+ +EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDSINDKIEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|419648859|ref|ZP_14180177.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|380625820|gb|EIB44362.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9217]
Length = 356
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 148/282 (52%), Gaps = 60/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLRCSFCA 130
+ DG++K L +L D +E+V +P+++EK R T CVSSQVGC CSFC
Sbjct: 71 SKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCL 130
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL-- 185
T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V +A + L
Sbjct: 131 TAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQ 190
Query: 186 NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------------------- 222
N + I R TIST G+ IK+L L LAI
Sbjct: 191 NDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAA 250
Query: 223 ----------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
G+ND++EHA EL +LL+ G VNLI FNP EGS
Sbjct: 251 IMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLILFNPHEGS 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y+RP + + F L + +T +IR+++GLD SAACGQL+
Sbjct: 309 LYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLK 350
>gi|384432095|ref|YP_005641455.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
gi|333967563|gb|AEG34328.1| Ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
Length = 355
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 150/299 (50%), Gaps = 58/299 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L + W + + + + DG+VK L L D + E V +P E+ K
Sbjct: 46 LPKALREALAQE-WRLSEFSLVQAFPSQDGSVKYLFTLLDGKKTEAVYMPYENRK----- 99
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+S+ VGCP C+FCATG GF RNL++ EI+ Q+L I + + + NVV MGMG
Sbjct: 100 TVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSPREIRNVVLMGMG 159
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----- 222
EP+LNL++VL+A R + K + + R +T+STVG+P I +LA L LA+
Sbjct: 160 EPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPD 219
Query: 223 ----------------------------------------SAGVNDQVEHAVELAELLHE 242
GVND + A LA+LL
Sbjct: 220 DETRRKIIPTAHRYPIAEIMEAVRHYYAKTKRRVTFEYTLLKGVNDHLWQARLLAKLLK- 278
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G HVNLIPFNP EG+ K VLAFA L+ + TSIR +RG D AACGQL
Sbjct: 279 -GLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336
>gi|419619737|ref|ZP_14153198.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51494]
gi|419672789|ref|ZP_14202275.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51037]
gi|380602241|gb|EIB22526.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51494]
gi|380654874|gb|EIB71211.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51037]
Length = 356
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 159/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
+L +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 KLVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|325282884|ref|YP_004255425.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
proteolyticus MRP]
gi|324314693|gb|ADY25808.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
proteolyticus MRP]
Length = 350
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 158/332 (47%), Gaps = 67/332 (20%)
Query: 25 FTCPS-RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
F P R RQ W + G + + +P R +L AGW + T + DG+
Sbjct: 17 FPLPGFRRRQLLEWVYQHGVG-SYEQMHTLPAELRAELA-AGWRLNPFDDIETFRSDDGS 74
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
VK L L D R +E V +P D K T CVS+ VGCP RC+FCATG GF RNL+
Sbjct: 75 VKYLFTLPDGRQMEAVYMPYLDRK-----TICVSTMVGCPARCAFCATGAMGFGRNLTPG 129
Query: 144 EIVGQVLAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
EIVGQ+LA+ E I + N+VFMGMGE MLN + ++A R L +G +R +T+
Sbjct: 130 EIVGQILAVAGGEGIEPREIRNLVFMGMGEAMLNYDNTMQAARILLHPQALGMSKRRVTL 189
Query: 199 STVGVPNTIKKLASYKLQSTLAIRSA---------------------------------- 224
STVG+ I++LA + L I+ A
Sbjct: 190 STVGIAKGIRRLAE---EDDLGIKLAISLHAPDEETRQQIIPTGGANSIDEIMQAARDYQ 246
Query: 225 ---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
G+ND + A LAE L G HVNLIP NP GS++ ++
Sbjct: 247 AKTGRRITMEYTMLRGINDHLWQAELLAERLE--GLVSHVNLIPMNPWPGSNFVSSTEEQ 304
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ AF LE + S+R++RG DA AACGQL
Sbjct: 305 IQAFYDLLEERGVDVSVRRSRGKDAGAACGQL 336
>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
Length = 376
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 168/339 (49%), Gaps = 65/339 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R +Q W +AG + + + ++ R L + + +LP I + DGT K
Sbjct: 27 PYRAQQIIQWIHQAGLTDFAKMTN-LGKTLREKLSQL--SCIKLPEIIACQKSNDGTHKW 83
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+RNL++ EI+
Sbjct: 84 LLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNRNLTTAEII 138
Query: 147 GQV-LAIEEIFK------HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMIT 197
GQV LA+ E+ + RVTNVV MGMGEP+LN +V+ A + D G +R +T
Sbjct: 139 GQVWLAVRELSQSQGNHDKRVTNVVMMGMGEPLLNFDNVVSAMDIMMDDFAYGLSKRRVT 198
Query: 198 ISTVGVPNTIKKL---------------------------ASYKLQSTLA---------- 220
+ST GV +++L Y L +A
Sbjct: 199 LSTSGVLPDLERLREVSPVALAVSLHAPNDELRNELVPINKKYPLAQLMALCKIYFKNEP 258
Query: 221 --------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
+ GVNDQ EHA++L +LL VNLIPFNP + Y+R ++ + A
Sbjct: 259 RRKVTFEYVMLKGVNDQPEHAIQLIKLLRNI--PAKVNLIPFNPFPMTQYERSSQETIDA 316
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
F L +H I T R+TRG D AACGQL E + R
Sbjct: 317 FREKLMAHGINTITRKTRGDDIDAACGQLAGEVKDRTTR 355
>gi|419651486|ref|ZP_14182582.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-894]
gi|380631085|gb|EIB49295.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-894]
Length = 356
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRI 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIRSAGVNDQ---------------------------------------------VEHAV 234
AI VND+ +EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDSINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EG Y+RP + V+ F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGGLYKRPSLENVIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|121612139|ref|YP_001001357.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|419618882|ref|ZP_14152407.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 129-258]
gi|419625133|ref|ZP_14158157.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|419642108|ref|ZP_14173918.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni ATCC 33560]
gi|205829695|sp|A1W1W6.1|RLMN_CAMJJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
81-176]
gi|380594141|gb|EIB14949.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 129-258]
gi|380605477|gb|EIB25450.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|380625402|gb|EIB43991.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni ATCC 33560]
Length = 356
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 157/308 (50%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P++ EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKKEKINTEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|57236899|ref|YP_179852.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni RM1221]
gi|384444072|ref|YP_005660324.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni S3]
gi|424846555|ref|ZP_18271149.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NW]
gi|81557377|sp|Q5HS83.1|RLMN_CAMJR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|57165703|gb|AAW34482.1| radical SAM enzyme, Cfr family [Campylobacter jejuni RM1221]
gi|315059159|gb|ADT73488.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni S3]
gi|356485853|gb|EHI15840.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NW]
Length = 356
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D IE+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRI 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EG Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|283953675|ref|ZP_06371206.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni 414]
gi|283794716|gb|EFC33454.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni 414]
Length = 356
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVE----DEKG 108
+P+ R +L + + + + + D ++K L +L D +E+V +P++ DEKG
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDRSIKYLFELIDGLRVESVLLPMKEEKIDEKG 104
Query: 109 P----MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGILL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIVQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L S +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSIYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|386361418|ref|YP_006059663.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Thermus thermophilus JL-18]
gi|383510445|gb|AFH39877.1| 23S rRNA m2A2503 methyltransferase [Thermus thermophilus JL-18]
Length = 355
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 152/299 (50%), Gaps = 58/299 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L + W + + + + DG+VK L L D + E V +P E+ K
Sbjct: 46 LPKALREALAQE-WRLSEFSLVQAFPSQDGSVKYLFTLLDGKKTEAVYMPYENRK----- 99
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+S+ VGCP C+FCATG GF RNL++ EI+ Q+L I + + + NVV MGMG
Sbjct: 100 TVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSPREIRNVVLMGMG 159
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI------ 221
EP+LNL++VL+A R + K + + R +T+STVG+P I +LA L LA+
Sbjct: 160 EPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPD 219
Query: 222 ---RSA------------------------------------GVNDQVEHAVELAELLHE 242
R A GVND + A LA+LL
Sbjct: 220 DETRKAIIPTAHRYPIAEIMEAVRHYYAKTKRRVTFEYTLLKGVNDHLWQARLLAKLLK- 278
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G HVNLIPFNP EG+ + A+LAFA L+ + SIR +RG D AACGQL
Sbjct: 279 -GLSAHVNLIPFNPWEGAPVAGTPRAAILAFAEELKRLGVPVSIRWSRGQDVGAACGQL 336
>gi|46199876|ref|YP_005543.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB27]
gi|81567593|sp|Q72HC1.1|RLMN_THET2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27]
Length = 355
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 149/299 (49%), Gaps = 58/299 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L W + + + + DG+VK L L D + E V +P E+ K
Sbjct: 46 LPKALREALARE-WRLSEFSLVQAFPSQDGSVKYLFTLLDGKKTEAVYMPYENRK----- 99
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+S+ VGCP C+FCATG GF RNL++ EI+ Q+L I + + + NVV MGMG
Sbjct: 100 TVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSPREIRNVVLMGMG 159
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----- 222
EP+LNL++VL+A R + K + + R +T+STVG+P I +LA L LA+
Sbjct: 160 EPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPD 219
Query: 223 ----------------------------------------SAGVNDQVEHAVELAELLHE 242
GVND + A LA+LL
Sbjct: 220 DETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGVNDHLWQARLLAKLLK- 278
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G HVNLIPFNP EG+ K VLAFA L+ + TSIR +RG D AACGQL
Sbjct: 279 -GLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336
>gi|419644180|ref|ZP_14175767.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9081]
gi|380622514|gb|EIB41263.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9081]
Length = 356
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 150/282 (53%), Gaps = 60/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLRCSFCA 130
+ DG++K L +L D IE+V +P+++EK R T CVSSQVGC CSFC
Sbjct: 71 SKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCL 130
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL-- 185
T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V +A + L
Sbjct: 131 TAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQ 190
Query: 186 NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------------------SA 224
N+ + I R TIST G+ IK+L L LAI SA
Sbjct: 191 NEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTELMPINKAYNISA 250
Query: 225 ------------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
G+ND++EHA EL +LL+ G VNLI FNP EG
Sbjct: 251 IMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLILFNPHEGG 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y+RP + + F L + +T +IR+++GLD SAACGQL+
Sbjct: 309 LYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLK 350
>gi|419588870|ref|ZP_14124686.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
317/04]
gi|380569152|gb|EIA91601.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
317/04]
Length = 356
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 149/290 (51%), Gaps = 60/290 (20%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGC 122
L + + DG++K L +L D IE+V +P+++E+ R T CVSSQVGC
Sbjct: 63 LKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDDEGKRISHTRYTICVSSQVGC 122
Query: 123 PLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVL 179
CSFC T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V
Sbjct: 123 KSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVS 182
Query: 180 EAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------- 222
+A + L N + I R TIST G+ IK+L L LAI
Sbjct: 183 KAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEMNLGVLLAISLHAVNDELRTELMPI 242
Query: 223 ------------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLI 252
G+ND++EHA EL +LL+ G VNLI
Sbjct: 243 NKAYNIAAIMDAVRAFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLI 300
Query: 253 PFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
FNP EGS Y RP + + F L + +T +IR+++GLD SAACGQL+
Sbjct: 301 LFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCTIRESKGLDISAACGQLK 350
>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
Length = 386
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 146/280 (52%), Gaps = 65/280 (23%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K I++ L+ETV IP D R T CVSSQVGC L CSFC+TGK GF R
Sbjct: 88 SVDGTRKWAIRIAGGGLVETVLIPDGD-----RGTLCVSSQVGCSLDCSFCSTGKQGFQR 142
Query: 139 NLSSHEIVGQV-LAIE--EIF----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
+LS+ EI+GQV LAI + F K +TNVV MGMGEP+LN +V+++ + D
Sbjct: 143 DLSAAEIIGQVWLAINSYDAFPSTNKRIITNVVMMGMGEPLLNFDNVVQSMSLMMDDFGY 202
Query: 192 G--QRMITISTVGVPNTIKKLASYKLQSTLAI---------RS----------------- 223
G +R +T+ST GV + KL + +LAI RS
Sbjct: 203 GISKRRVTLSTSGVVPALDKLGDVS-EVSLAISLHAPNDELRSQLVPINKKYPIAELLAA 261
Query: 224 ----------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
AGVND EHA ELA+LL ++ +NLIPFNP SD
Sbjct: 262 CGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKELAKLLKDF--PCKINLIPFNPFSLSD 319
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
YQRP KK + F L + I T++R TRG D AACGQL
Sbjct: 320 YQRPSKKTIDQFWQVLSNSSIVTTVRNTRGDDIDAACGQL 359
>gi|386857433|ref|YP_006261610.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
gobiensis I-0]
gi|380000962|gb|AFD26152.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
gobiensis I-0]
Length = 348
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 155/300 (51%), Gaps = 59/300 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P R +L E + + TV + DG+VK L L+D R +E V +P D K
Sbjct: 40 LPAELRAEL-ERDYLLNPFREIETVRSTDGSVKYLFTLQDGRQMEAVYMPYLDRK----- 93
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T CVS+ VGCP +C+FCATG GF RNL+ E+VGQ+LA+ E + + N+VFMGMG
Sbjct: 94 TICVSTMVGCPAKCAFCATGAMGFGRNLTPGEVVGQILAVAGGEGLAPRELRNLVFMGMG 153
Query: 170 EPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS-----YKLQSTL--- 219
EP+LN + + A R L + +G +R IT+STVG+ I++LA+ KL +L
Sbjct: 154 EPLLNYEHTMNAARILLHPLALGMSKRRITLSTVGLAKGIRRLAAEDDLGLKLAISLHAP 213
Query: 220 ------------------AIRSA--------------------GVNDQVEHAVELAELLH 241
I +A GVND A LA+LL
Sbjct: 214 DEETRQRIIPTGAANGISEIMAAAREYQAVTGRRLTFEYSMLRGVNDHPWQAELLADLLS 273
Query: 242 EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G HVNLIP NP +GS ++ + + AF ALE+ + S+R++RG DA AACGQL
Sbjct: 274 --GLVSHVNLIPMNPWDGSGFESSTEAEIQAFYDALEARGVDVSVRRSRGKDAGAACGQL 331
>gi|374339787|ref|YP_005096523.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Marinitoga piezophila KA3]
gi|372101321|gb|AEX85225.1| 23S rRNA m2A2503 methyltransferase [Marinitoga piezophila KA3]
Length = 346
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 151/297 (50%), Gaps = 55/297 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + R L + + P+ + D T K L KLED R IE+V + P R+
Sbjct: 49 LSKEMRKQLDDYFYIYIPEPVDIQRSKKDKTTKFLWKLEDGRTIESVLLFY-----PNRV 103
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+AC+SSQVGC L+C FC+TG GF R+LS+ EI+ QVLAIE++ + N+V MGMGEP+
Sbjct: 104 SACISSQVGCALKCKFCSTGASGFERDLSTGEIIAQVLAIEKLENVNINNIVLMGMGEPL 163
Query: 173 LNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
LN +V++A R N K +G R ITIST G+ + I++LA ++L L+I
Sbjct: 164 LNYDNVIKAIRNWNNKKMKNLGARHITISTAGIADKIEELADFELDIRLSISLHAVSNYQ 223
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
G ND E A++LAE+L G
Sbjct: 224 RDQIMPINSKYPIEQVLQAAKVYQQKTKNRVTIEYIAIKGFNDTEEDAIKLAEILK--GL 281
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VN+IP NP + ++RP KK + F L+ + I ++R +G D AACGQL+
Sbjct: 282 KVMVNIIPVNP-NPAGFERPSKKFLTNFVKKLKENGIEATLRIEKGTDIDAACGQLK 337
>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
gi|81368632|sp|Q5WWH4.1|RLMN_LEGPL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
Length = 382
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 147/287 (51%), Gaps = 61/287 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 76 SADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 130
Query: 139 NLSSHEIVGQV-LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA E+ + ++TNVV MGMGEP+LN +V+ A + D+
Sbjct: 131 NLSTAEIIGQVWLAARELSDNDGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAY 190
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L ++
Sbjct: 191 GLSKRRVTLSTSGVIPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLC 250
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LLH VNLIPFNP + YQR
Sbjct: 251 KRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLH--NVPAKVNLIPFNPFPLTQYQR 308
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ + AF L H I T R+TRG D AACGQL E + R
Sbjct: 309 SSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAGEVKDKTSR 355
>gi|205829856|sp|Q5ZV93.2|RLMN_LEGPH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
Length = 382
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 147/287 (51%), Gaps = 61/287 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 76 SADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 130
Query: 139 NLSSHEIVGQV-LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA E+ + ++TNVV MGMGEP+LN +V+ A + D+
Sbjct: 131 NLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAY 190
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L ++
Sbjct: 191 GLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLC 250
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LLH VNLIPFNP + YQR
Sbjct: 251 KRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLH--NVPAKVNLIPFNPFPLTQYQR 308
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ + AF L H I T R+TRG D AACGQL E + R
Sbjct: 309 SSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAGEVKDKTSR 355
>gi|397667169|ref|YP_006508706.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395130580|emb|CCD08825.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 147/287 (51%), Gaps = 61/287 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 76 SADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 130
Query: 139 NLSSHEIVGQV-LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA E+ + ++TNVV MGMGEP+LN +V+ A + D+
Sbjct: 131 NLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAY 190
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L ++
Sbjct: 191 GLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLC 250
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LLH VNLIPFNP + YQR
Sbjct: 251 KRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLH--NVPAKVNLIPFNPFPLTQYQR 308
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ + AF L H I T R+TRG D AACGQL E + R
Sbjct: 309 SSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAGEVKDKTSR 355
>gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis PHE/MN1-00]
gi|442555960|ref|YP_007365785.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
gi|123082152|sp|Q1MQJ3.1|RLMN_LAWIP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis
PHE/MN1-00]
gi|441493407|gb|AGC50101.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
Length = 358
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 161/306 (52%), Gaps = 57/306 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVT-AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+PQ R L LP T+ ++DGT K L++L D LIETV IP D+ G +R
Sbjct: 48 LPQKIRASL--TALIKINLPEIVTIQQSSDGTKKFLLRLSDGALIETVLIPSIDKAGNIR 105
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF------KHRVTNVVF 165
+T C+SSQVGC + C+FC+T GF RNL++ EIV QVL + K + N+VF
Sbjct: 106 ITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPIIRNIVF 165
Query: 166 MGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKL------------- 210
MGMGEP+LNL + A L+ K + R IT+ST G+ I+ L
Sbjct: 166 MGMGEPLLNLTELTRALHILHSEKGLNFSARRITVSTCGIKKGIQALSENGLAFLALSLH 225
Query: 211 -ASYKLQSTLAIRSA------------------------------GVNDQVEHAVELAEL 239
++ +L+ST+ ++A G+ND EHA ELA+L
Sbjct: 226 ASNQELRSTIMPKAAKWDLKELIDTLKNYSLKKREKITFEYLLLGGINDSPEHAKELAKL 285
Query: 240 LHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
+ + +G +NLIP+NP +G Y +P ++ +L F L S I T +R+++G D +AACG
Sbjct: 286 ITDI-KG-KLNLIPYNPAQGQPYLKPTEENILKFQKVLWSKGIVTILRKSKGQDINAACG 343
Query: 300 QLRNEF 305
QL+ +
Sbjct: 344 QLKTTY 349
>gi|373496938|ref|ZP_09587481.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
gi|404366950|ref|ZP_10972326.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|313689832|gb|EFS26667.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|371964597|gb|EHO82110.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
Length = 350
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 153/286 (53%), Gaps = 60/286 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ D T K L KLED IETV + +D++ T C+SSQVGCP++C+FCATG+
Sbjct: 72 QQVSKIDKTEKFLFKLEDGNTIETVLLRHKDKRN----TLCISSQVGCPVKCAFCATGQD 127
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
GF RNL +EI+ QV +E + + N+VFMGMGEP+LNL +VL+A L+ + +
Sbjct: 128 GFVRNLDVNEIINQVYTVERRLTKQGSNINNIVFMGMGEPLLNLSNVLKALDILSNENGI 187
Query: 190 QIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RSAGVND---- 228
I +R ITIST G+ I+K+ KL LAI RS + D
Sbjct: 188 NISKRKITISTSGIVPNIEKILLEKLPIELAISLHSAINAKRDMIIPVNRSYPLEDLYAI 247
Query: 229 ------QVEHAVE------------------LAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
Q + + LA+ +HE+ H VNLIP+NP+ G++++R
Sbjct: 248 LQEYQRQTKRRISFEYIMINDFNVSDIDANALADFVHEF--DHVVNLIPYNPVAGTEFER 305
Query: 265 PYKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQKSP 309
P +K + F L+ K+ ++R+ +G D ACGQLR QK+P
Sbjct: 306 PSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDGACGQLR---QKAP 348
>gi|419653985|ref|ZP_14184940.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|419664985|ref|ZP_14195063.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|419680917|ref|ZP_14209768.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 140-16]
gi|419687117|ref|ZP_14215527.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1798]
gi|419689824|ref|ZP_14218045.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1893]
gi|419691778|ref|ZP_14219889.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1928]
gi|380631853|gb|EIB49995.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|380644368|gb|EIB61557.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|380659349|gb|EIB75328.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 140-16]
gi|380662927|gb|EIB78604.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1798]
gi|380670225|gb|EIB85485.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1893]
gi|380671657|gb|EIB86859.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1928]
Length = 356
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 157/308 (50%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIRSAGVNDQ---------------------------------------------VEHAV 234
AI VND+ +EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDSINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777412|ref|YP_005185849.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508226|gb|AEW51750.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 386
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 147/287 (51%), Gaps = 61/287 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 80 SADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 134
Query: 139 NLSSHEIVGQV-LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA E+ + ++TNVV MGMGEP+LN +V+ A + D+
Sbjct: 135 NLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAY 194
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L ++
Sbjct: 195 GLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLC 254
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LLH VNLIPFNP + YQR
Sbjct: 255 KRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLH--NVPAKVNLIPFNPFPLTQYQR 312
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ + AF L H I T R+TRG D AACGQL E + R
Sbjct: 313 SSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAGEVKDKTSR 359
>gi|150021379|ref|YP_001306733.1| ribosomal RNA large subunit methyltransferase N [Thermosipho
melanesiensis BI429]
gi|205829916|sp|A6LN47.1|RLMN_THEM4 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|149793900|gb|ABR31348.1| radical SAM enzyme, Cfr family [Thermosipho melanesiensis BI429]
Length = 340
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 141/273 (51%), Gaps = 55/273 (20%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
++ D T K L +L D IE+V + R+TAC+S+QVGCP++C FCATG+ GF
Sbjct: 71 ISKIDKTTKFLWELRDGNTIESVALF-----HSGRVTACISTQVGCPVKCEFCATGQSGF 125
Query: 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQR 194
RNL+ EIV Q+LAIE K +V NVV+MGMGEP+LN ++V+++ + LN K + IG R
Sbjct: 126 VRNLTVGEIVSQILAIELNRKIKVGNVVYMGMGEPLLNFENVIDSIKMLNDKKMLNIGIR 185
Query: 195 MITISTVGVPNTIKKLASYKLQSTLAIRSAGV---------------------------- 226
IT+STVG+P I LA L LA+ V
Sbjct: 186 RITVSTVGIPEKIIALAESGLNVKLALSLHAVTDYKRDQIIPLNKKYSVEELIYSLRKYQ 245
Query: 227 -----------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
ND E A+ L ELL G +VNLIP NP+ + RP + A
Sbjct: 246 EITGNRVTIEYILIREFNDYPEDAIRLVELLR--GLSVYVNLIPINPV-NPKFHRPNRWA 302
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ F LE + I IR+ +G D AACGQLR
Sbjct: 303 LERFKEILEKNGIECEIRKEKGTDIDAACGQLR 335
>gi|419683053|ref|ZP_14211764.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1213]
gi|380660049|gb|EIB76005.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1213]
Length = 356
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 157/308 (50%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EG Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|226227123|ref|YP_002761229.1| hypothetical protein GAU_1717 [Gemmatimonas aurantiaca T-27]
gi|259491989|sp|C1A949.1|RLMN_GEMAT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|226090314|dbj|BAH38759.1| hypothetical protein GAU_1717 [Gemmatimonas aurantiaca T-27]
Length = 360
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 149/296 (50%), Gaps = 52/296 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L + + L + + DGT K L ++ D +LIETV IP D RL
Sbjct: 54 LPKALREGL-AGSFRITALELTTRQKSMDGTEKFLFRMHDGQLIETVAIPDGD-----RL 107
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRV-TNVVFMGMGEP 171
T C+SSQ GC L+C+FCATG GF RNL EI GQV + + V TN+VFMGMGEP
Sbjct: 108 TFCISSQAGCALQCAFCATGAMGFQRNLHPSEIAGQVRELRMLTPSIVPTNIVFMGMGEP 167
Query: 172 MLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRS------ 223
++N K+V LN + + IG R ITISTVGV I LA+ Q LAI
Sbjct: 168 LMNWKAVSPTLSLLNDPRALGIGARHITISTVGVLPGIVALAARPEQFRLAISIHAPSDA 227
Query: 224 -----------------------------------AGVNDQVEHAVELAELLHEWGRGHH 248
GVNDQ EHA +LA+L +
Sbjct: 228 LRRTLMPVNTKYPLADVIAAAREFDRRVTFEYVMLGGVNDQPEHAAQLAQLARDC--RAF 285
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
VNLIP +P + + AFA A+ + + T++R++RGLD +AACGQLR E
Sbjct: 286 VNLIPLHPGGSMGFSPSTTPTINAFAKAIRARGVETAVRRSRGLDIAAACGQLRTE 341
>gi|397663988|ref|YP_006505526.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395127399|emb|CCD05591.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 147/287 (51%), Gaps = 61/287 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 76 SADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 130
Query: 139 NLSSHEIVGQV-LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA E+ + ++TNVV MGMGEP+LN +V+ A + D+
Sbjct: 131 NLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAY 190
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L ++
Sbjct: 191 GLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLC 250
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LLH VNLIPFNP + YQR
Sbjct: 251 KRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLH--NVPAKVNLIPFNPFPLTQYQR 308
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ + AF L H I T R+TRG D AACGQL E + R
Sbjct: 309 SSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAGEVKDKTSR 355
>gi|354558669|ref|ZP_08977923.1| Ribosomal RNA large subunit methyltransferase N [Desulfitobacterium
metallireducens DSM 15288]
gi|353545731|gb|EHC15181.1| Ribosomal RNA large subunit methyltransferase N [Desulfitobacterium
metallireducens DSM 15288]
Length = 357
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 163/328 (49%), Gaps = 55/328 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W ++ A + + + ++ +QE V L + V+ D T K L +
Sbjct: 30 RGRQLFHW-IQQKAVQNWDEIKNIGKADLIKIQERLILVPLLQLKEQVSQ-DETRKFLFE 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D + IE V + + K R T CVS+QVGCP+ C+FCATG GG+ RNLSS EIVGQ+
Sbjct: 88 LADGQSIECVLMDYDRVKSRNRRTVCVSTQVGCPVGCAFCATGLGGWQRNLSSGEIVGQI 147
Query: 150 LAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QIGQRMITISTVG 202
L I + +VTNVVFMGMGEP+LN VL+ + LN++ IG R +TIST G
Sbjct: 148 LDITHAMRQEDPDFQVTNVVFMGMGEPLLNYDEVLKGIQILNQEAGQNIGMRRMTISTSG 207
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVNDQVEH------------------------------ 232
V I++LA Q LA+ N+++ +
Sbjct: 208 VAPKIRQLAQDNPQVGLAVSLHSANNEIRNDLIPINRRYPLEELMKACQEYTERTNRRIT 267
Query: 233 --------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
A E+A+LL G+ HVNLIP NP+ + RP + FA LE
Sbjct: 268 FEVALIAGQATHKAAEEVAQLLQ--GQLAHVNLIPVNPVVETGMARPDGAEIQGFARVLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQ 306
I S+R+ +G D AACGQLR +++
Sbjct: 326 QRGIPVSLREEKGTDIDAACGQLRRQWE 353
>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
str. Corby]
gi|296107129|ref|YP_003618829.1| radical SAM protein [Legionella pneumophila 2300/99 Alcoy]
gi|205829782|sp|A5IC42.1|RLMN_LEGPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 147/287 (51%), Gaps = 61/287 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 76 SADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 130
Query: 139 NLSSHEIVGQV-LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA E+ + ++TNVV MGMGEP+LN +V+ A + D+
Sbjct: 131 NLSTAEIIGQVWLAARELSDNNGAHDKKITNVVMMGMGEPLLNFDNVVSAMSIMMDDLAY 190
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L ++
Sbjct: 191 GLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLC 250
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LLH VNLIPFNP + YQR
Sbjct: 251 KRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLH--NVPAKVNLIPFNPFPLTQYQR 308
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ + AF L H I T R+TRG D AACGQL E + R
Sbjct: 309 SSRETIDAFRDKLIKHGINTITRKTRGDDIDAACGQLAGEVKDKTTR 355
>gi|89895437|ref|YP_518924.1| hypothetical protein DSY2691 [Desulfitobacterium hafniense Y51]
gi|123279892|sp|Q24U12.1|RLMN_DESHY RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|89334885|dbj|BAE84480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 357
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 159/326 (48%), Gaps = 51/326 (15%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W V+ A + + + R LQ+ G + L R + DGT K L +
Sbjct: 30 RGRQVFQW-VQQKAVQNWEELKNIGAGDRQKLQD-GLFLQPLRKVREQISQDGTRKFLFR 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +E V + + K R T CVS+Q+GC + C+FCATG GG+ RNLS EI+GQV
Sbjct: 88 CADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQV 147
Query: 150 LAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
L I + + +VTN+VFMGMGEP+LN ++VL+A LN + IG R +TIST G
Sbjct: 148 LDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSG 207
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW--------- 243
V I++LA Q LA+ ++ + EL E ++
Sbjct: 208 VAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACRDYTTLTNRRIT 267
Query: 244 ----------------GRGH-------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
GH HVNLIP NP+ G+ RP K V FA LES
Sbjct: 268 FEIALISGQATLEAAQAVGHLLKRQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQCLESM 327
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQ 306
I S+R+ +G D AACGQLR + +
Sbjct: 328 GIPVSVREEKGTDIDAACGQLRRQLE 353
>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
gi|81370554|sp|Q5X516.1|RLMN_LEGPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
Length = 382
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 147/287 (51%), Gaps = 61/287 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+KLE IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 76 SADGTHKWLLKLECGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 130
Query: 139 NLSSHEIVGQV-LAIEEIFKH------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA E+ + ++TNVV MGMGEP+LN +V+ A + D+
Sbjct: 131 NLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAY 190
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L ++
Sbjct: 191 GLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLC 250
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LLH VNLIPFNP + YQR
Sbjct: 251 KRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLH--NVPAKVNLIPFNPFPLTQYQR 308
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ + AF L H I T R+TRG D AACGQL E + R
Sbjct: 309 SSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAGEVKDKTSR 355
>gi|15805960|ref|NP_294660.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
radiodurans R1]
gi|81624900|sp|Q9RVT6.1|RLMN_DEIRA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|6458660|gb|AAF10513.1|AE001946_5 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 346
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 152/303 (50%), Gaps = 65/303 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P R +L E+ + + TV + DG+VK L L D R +E V +P D K
Sbjct: 40 LPAGLRAEL-ESEYQLNPFRDIETVRSHDGSVKYLFTLNDGRQMEAVYMPYLDRK----- 93
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T CVS+ VGCP RC+FCATGK GF RNL+ EIVGQVLA+ E I + N+VFMGMG
Sbjct: 94 TICVSTMVGCPARCAFCATGKMGFGRNLTPGEIVGQVLAVAGGEGISPREIRNLVFMGMG 153
Query: 170 EPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAIRSA--- 224
E +LN ++ + A R L +G +R +T+STVG+ I++LA + L I+ A
Sbjct: 154 EALLNYENSMAAARVLLHPDALGMSKRRVTLSTVGIAKGIRRLAE---EDDLGIKLAISL 210
Query: 225 ----------------------------------------------GVNDQVEHAVELAE 238
GVND + A LA+
Sbjct: 211 HAPDEETRQQIIPTGAANSIEEIMAAARDYQAVTGRRVTMEYTMLRGVNDHLWQAELLAD 270
Query: 239 LLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAAC 298
L G HVNLIP NP +GSD+ ++ + AF AL+ + S+R++RG DA AAC
Sbjct: 271 RLD--GLVSHVNLIPMNPWDGSDFVSSSEEQIQAFYDALQDRGVDVSVRRSRGKDAGAAC 328
Query: 299 GQL 301
GQL
Sbjct: 329 GQL 331
>gi|419621493|ref|ZP_14154745.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|380601803|gb|EIB22109.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23216]
Length = 356
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDTEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N+ + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L + + +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVICTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|407803612|ref|ZP_11150446.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
gi|407022456|gb|EKE34209.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
Length = 382
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 164/350 (46%), Gaps = 66/350 (18%)
Query: 12 FLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRL 71
F Y + C R +Q W + + + ++FR L E R
Sbjct: 12 FSYAEMEAFCLDIGEKKFRAQQLLKW-IHHHQVDDFEQMTDLGKAFRARLAEVAEI--RA 68
Query: 72 PI-FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
PI + + DGT K +++++ +ETV IP R T CVSSQVGC + CSFC+
Sbjct: 69 PIVLQENISRDGTRKWVLQVDGGGAVETVFIP-----DGRRGTLCVSSQVGCSVDCSFCS 123
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHR 183
TGK GF R+LSS EI+GQV + F +H VTNVV MGMGEP+LN +V+ A R
Sbjct: 124 TGKQGFQRDLSSAEIIGQVWLASKTFGPRRNLGEHPVTNVVMMGMGEPLLNYDNVVRAMR 183
Query: 184 CLNKDVQIG--QRMITISTVGVPNTIKKLA---------------------------SYK 214
+ D+ G +R IT+ST GV I +L+ Y
Sbjct: 184 IMKDDLGYGISKRRITLSTSGVVPMIDRLSQDLDVSLAISLHAPNDALRDVLVPLNRKYP 243
Query: 215 LQSTLA--------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPF 254
L+ LA + G+NDQ EHA +L +LL +NLIPF
Sbjct: 244 LEELLAACQRYSDGVEHRHKSITMEYVLLKGINDQPEHARQLVKLLRNR-MPIKLNLIPF 302
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
NP S Y+RP K VLAF L + + T+IR TRG D AACGQL E
Sbjct: 303 NPFPHSGYERPAKPDVLAFHKYLNENGLMTTIRTTRGDDIDAACGQLVGE 352
>gi|372270406|ref|ZP_09506454.1| radical SAM protein [Marinobacterium stanieri S30]
Length = 377
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 172/342 (50%), Gaps = 67/342 (19%)
Query: 17 AQVICFFFFTCPSRGR--QRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-I 73
A++I FF + R Q W + GAS + ++ R L E R P +
Sbjct: 16 AKLIAFFEQQGEKKFRATQVLKWLHQQGASSFDEMTN-ISKAMRAKLAEVAEI--REPEV 72
Query: 74 FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGK 133
T+ DGT K +I+++ IE V IP D R T CVSSQVGC L CSFC+TGK
Sbjct: 73 LLDKTSRDGTRKWVIRMDGGSAIEMVLIPDGD-----RRTLCVSSQVGCSLDCSFCSTGK 127
Query: 134 GGFSRNLSSHEIVGQV-LAIE-----EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
GF+RNLS+ EI+ Q+ +AI E K VTNVV MGMGEP++N ++V++A + +
Sbjct: 128 QGFNRNLSTAEIIAQLRVAIRSCGPFEPSKRHVTNVVMMGMGEPLMNFENVVDATQLMMD 187
Query: 188 DVQIG--QRMITISTVGVPNTIKKLAS---------------------------YKLQST 218
D G +R +T+ST GV + KL+ Y ++
Sbjct: 188 DNAYGLSKRRVTLSTAGVVPALDKLSQVSDVSLAISLHAPNNELRDQLVPINKRYPIEEL 247
Query: 219 LAI-----------RSA--------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
+A R+A GVNDQ EHA ELA+LL + +NLIPFNP
Sbjct: 248 IAASNRYLESLPDKRAATVEYTLIDGVNDQPEHARELAKLLKQL--PCKLNLIPFNPFPN 305
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
S Y+RP ++A+ F L I T++R+TRG D AACGQL
Sbjct: 306 SGYRRPSEQAIQRFKDILVRASIITTVRRTRGDDVDAACGQL 347
>gi|297564808|ref|YP_003683780.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
gi|296849257|gb|ADH62272.1| radical SAM enzyme, Cfr family [Meiothermus silvanus DSM 9946]
Length = 344
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 146/297 (49%), Gaps = 54/297 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ R +L E + V + DG VK L L D + E V +P K
Sbjct: 48 LPKGLRQELAEK-YRVSEFAHVAPFVSQDGAVKYLYTLWDGQKTEAVYMPYAGRK----- 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH---RVTNVVFMGMG 169
T C+SS VGCP C+FCATGK GF RNL++ EI+ Q+L H + NVV MGMG
Sbjct: 102 TICISSMVGCPAGCTFCATGKMGFGRNLTAAEILDQILFAAHHQGHSPREIRNVVLMGMG 161
Query: 170 EPMLNLKSVLEA-HRCLN-KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227
EP+LNL VLEA R L+ + + + R IT+STVG+P I +LA L LA+ +
Sbjct: 162 EPLLNLNHVLEAIRRMLDPQGLAMSPRRITLSTVGIPRGIYRLAQEDLGVRLALSLHAPD 221
Query: 228 DQVE-------HAVELAELL--------------------------HEW----------G 244
DQ H +AE++ H W G
Sbjct: 222 DQTRQKIIPTAHRYSIAEIMEAVRHYYAQTKRRVTLEYTLLKGLNDHPWQARALAGLLAG 281
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
HVNLIP+NP EG+ +Q K+ +LAFA ALE I S+R +RG D AACGQL
Sbjct: 282 LSAHVNLIPWNPWEGAPHQGTGKEKILAFAAALERMGIPVSVRWSRGRDVGAACGQL 338
>gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 363
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/276 (40%), Positives = 139/276 (50%), Gaps = 54/276 (19%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
TAAD T K L++L D IETV IP ED R T C+SSQVGC L CSFCATG G S
Sbjct: 83 TAADCTRKWLLRLPDGNAIETVFIPGED-----RGTLCISSQVGCSLACSFCATGAQGLS 137
Query: 138 RNLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ--IGQR 194
RNL +HEI+ QV +A + + +TN+VFMGMGEPMLNL+ VL A L D G R
Sbjct: 138 RNLETHEIIAQVRVARDFLGLDAITNIVFMGMGEPMLNLREVLPALDLLRDDYAYGFGAR 197
Query: 195 MITISTVGVPNTIKKLAS---------------------------YKLQSTLA------- 220
IT+ST GV + +L + Y L LA
Sbjct: 198 RITVSTAGVVPGMDRLGAESPVNLAISLHASRDEIRDILVPVNRHYPLAELLAACRRYPL 257
Query: 221 ----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
+ GVND HA EL LL + VNLIPFNP GSDY+R + +
Sbjct: 258 PPRRRITFEYVMLEGVNDADSHARELLRLLRDI--PAMVNLIPFNPFPGSDYKRSPQVRI 315
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
AF + + T R+ RG D +AACGQL + +
Sbjct: 316 DAFRDIILRGNVMTVTRRPRGDDIAAACGQLAGQVR 351
>gi|419657783|ref|ZP_14188431.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-1]
gi|380634331|gb|EIB52218.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-1]
Length = 356
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 157/308 (50%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIATIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EG Y+RP + + F L + +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>gi|388456385|ref|ZP_10138680.1| Fe-S containing enzyme [Fluoribacter dumoffii Tex-KL]
Length = 375
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 163/332 (49%), Gaps = 65/332 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R +Q W + G S + + R L + +LP I ++DGT K
Sbjct: 27 PYRAQQIIQWIHQTGLSDFTEMTN-LSKQLREKLAQRAHI--KLPEIIACQKSSDGTHKW 83
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L+KL+ IETV IP E +G T CVSSQVGC L CSFC+T K GF+RNLS+ EI+
Sbjct: 84 LLKLDCGNCIETVFIP-EATRG----TLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEII 138
Query: 147 GQV------LAIEE-IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMIT 197
GQV L++EE + RVTNVV MGMGEP+LN +V+ A + D G +R +T
Sbjct: 139 GQVWLAVRELSLEEGVHDKRVTNVVMMGMGEPLLNFDNVVSAMSIMMDDFAYGLSKRRVT 198
Query: 198 ISTVGVPNTIKKL---------------------------ASYKLQSTLA---------- 220
+ST GV +++L Y L +A
Sbjct: 199 LSTSGVLPELQRLREVSPVALAVSLHAPNDELRNELVPINKKYPLSQLMALCKTYFKNEP 258
Query: 221 --------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
+ GVNDQ EHA +L +LL VNLIPFNP + Y+R ++A+ A
Sbjct: 259 RRKVTFEYVMLKGVNDQPEHANQLIKLLRNIPA--KVNLIPFNPFPMTHYERSSQEAIDA 316
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNE 304
F L +H I T R+TRG D AACGQL E
Sbjct: 317 FRDKLIAHGINTITRKTRGDDIDAACGQLAGE 348
>gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 362
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/276 (40%), Positives = 139/276 (50%), Gaps = 54/276 (19%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
TAAD T K L++L D IETV IP ED R T C+SSQVGC L CSFCATG G S
Sbjct: 82 TAADCTRKWLLRLPDGNAIETVFIPGED-----RGTLCISSQVGCSLACSFCATGAQGLS 136
Query: 138 RNLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ--IGQR 194
RNL +HEI+ QV +A + + +TN+VFMGMGEPMLNL+ VL A L D G R
Sbjct: 137 RNLETHEIIAQVRVARDFLGLDAITNIVFMGMGEPMLNLREVLPALDLLRDDYAYGFGAR 196
Query: 195 MITISTVGVPNTIKKLAS---------------------------YKLQSTLA------- 220
IT+ST GV + +L + Y L LA
Sbjct: 197 RITVSTAGVVPGMDRLGAESPVNLAISLHASRDEIRDILVPVNRHYPLAELLAACRRYPL 256
Query: 221 ----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
+ GVND HA EL LL + VNLIPFNP GSDY+R + +
Sbjct: 257 PPRRRITFEYVMLEGVNDADSHARELLRLLRDI--PAMVNLIPFNPFPGSDYKRSPQVRI 314
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
AF + + T R+ RG D +AACGQL + +
Sbjct: 315 DAFRDIILRGNVMTVTRRPRGDDIAAACGQLAGQVR 350
>gi|372222778|ref|ZP_09501199.1| ribosomal RNA large subunit methyltransferase N [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 358
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 163/330 (49%), Gaps = 68/330 (20%)
Query: 30 RGRQRAPW------HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
RG Q W H G + + R D+ EA +T+ + + + + DGT
Sbjct: 41 RGNQVYEWLWKKSAHSFEGMTNISKETR--------DMLEANFTINNIRVDQMQRSTDGT 92
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
+K +KL D+ ++E+V IP E R TACVSSQVGC L C FCAT + RNL+
Sbjct: 93 IKNAVKLHDDLVVESVLIPTE-----TRTTACVSSQVGCSLDCRFCATARLKRMRNLNPD 147
Query: 144 EIVGQVLAIEE---IFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMIT 197
EI QV+AI+ ++ R ++N+VFMGMGEP++N +VL+A + + +G + IT
Sbjct: 148 EIYDQVVAIDNQSRLYHDRPLSNIVFMGMGEPLMNYNNVLKAIEMITSEEGLGMSPKRIT 207
Query: 198 ISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWG--- 244
+ST GVP IKK+A ++ LA+ D+V A+ +L E L W
Sbjct: 208 VSTSGVPKMIKKMADEDVRFKLAVSLHSAIDEVRTAIMPFNSTFPLKDLREALEYWYAKT 267
Query: 245 -----------RG-------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
RG VNLI +NPI+ ++Q+ A+ +
Sbjct: 268 KNRITYEYVVWRGINDSQKDVDALVKFCKFAPSKVNLIEYNPIDDGEFQQASDDALNRYI 327
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNE 304
LE + IT ++R++RG D AACGQL N+
Sbjct: 328 TTLEKNGITVTVRRSRGKDIDAACGQLANK 357
>gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis]
Length = 360
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 163/325 (50%), Gaps = 56/325 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W V++ A + +PQ+ R+ ++ W + L + + DGT K L +
Sbjct: 31 RGKQIFKW-VQSRAVREAAEMTDLPQALRSKIEAERW-LRPLALSCCRVSKDGTEKYLWQ 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D LIETV +P + R+T C+S+Q GCPL C FCATG+ GF RNL++ EIV QV
Sbjct: 89 LADGELIETVLMPYRRSQTRDRVTVCLSTQAGCPLGCKFCATGQQGFRRNLTAGEIVSQV 148
Query: 150 LAI-----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
L I + +VTN+VFMGMGEP LN + V A + IGQR IT+ST G
Sbjct: 149 LDITHRKGQSDPDFKVTNLVFMGMGEPFLNYEQVRRAIELFTHPEGQNIGQRRITVSTSG 208
Query: 203 VPNTIKKLA--SYKLQSTLAIRSA------------------------------------ 224
+ I++ A ++++ L++ +A
Sbjct: 209 IVPGIERFARENWEINLALSLHAADDQLRSQWMPVNRQYPIEKVLNACRRYWEQGRRRLS 268
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
GVND++E A +L +L W H+N+IP NP+ S +RP K ++ F L
Sbjct: 269 VEYALIEGVNDRLEDARQLGKLFTRW--PIHLNVIPVNPVTESGARRPDKARMVQFLDEL 326
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
+ I IR+ RG+D AACGQLR
Sbjct: 327 KRQGIDAVIREERGVDIEAACGQLR 351
>gi|340757467|ref|ZP_08694065.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
Length = 350
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 154/286 (53%), Gaps = 60/286 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ ++ D T K L KLED IETV + +D++ T C+SSQVGCP++C+FCATG+
Sbjct: 72 QQISKIDKTEKFLFKLEDGNTIETVLLRHKDKRN----TLCISSQVGCPVKCAFCATGQD 127
Query: 135 GFSRNLSSHEIVGQVLAIE-EIFKH--RVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
GF RNL +EI+ QV +E + K + N+VFMGMGEP+LNL +VL+A L+ + +
Sbjct: 128 GFVRNLDVNEIINQVYTVERRLVKQGSNINNIVFMGMGEPLLNLSNVLKALDILSNENGI 187
Query: 190 QIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RSAGVND---- 228
I +R ITIST G+ I+K+ KL LAI RS + D
Sbjct: 188 NISKRKITISTSGIVPNIEKILLEKLPIELAISLHSAINAKRDMIIPVNRSYPLEDLYAI 247
Query: 229 ------------QVEH------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
E+ A LA+ +HE+ H VNLIP+NP+ G++++R
Sbjct: 248 LQEYQRQTKRRISFEYIMINEFNVSDVDANALADFVHEF--DHVVNLIPYNPVAGTEFER 305
Query: 265 PYKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQKSP 309
P +K + F L+ K+ ++R+ +G D ACGQLR QK+P
Sbjct: 306 PSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDGACGQLR---QKAP 348
>gi|397906024|ref|ZP_10506851.1| Ribosomal RNA large subunit methyltransferase N [Caloramator
australicus RC3]
gi|397160938|emb|CCJ34186.1| Ribosomal RNA large subunit methyltransferase N [Caloramator
australicus RC3]
Length = 339
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 155/300 (51%), Gaps = 55/300 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ R+ L+E + + + I ++DGTVK L++L+D LIE V + +
Sbjct: 46 IPKKLRDKLKE-NFIIKNIFIEAKQESSDGTVKYLLRLKDGNLIEAVLM-----RYSYGN 99
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+S+Q GC + CSFCA+ GG R+LS E++G+VLAI + R++N+V MG GEP+
Sbjct: 100 SVCISTQAGCNMGCSFCASTIGGKIRDLSPGEMLGEVLAISKDQNIRISNIVLMGTGEPL 159
Query: 173 LNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
N +VL+ +N + + IG R IT+ST G+ IK+LA +LQ TLAI
Sbjct: 160 DNFDNVLKFLELINSKEGLNIGMRHITLSTCGLVPEIKRLADLRLQLTLAISLHAPNNDK 219
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
+ND +E A EL++ L G
Sbjct: 220 RKKIMPIANRYSMNELLEACRYYVEKTNRRITFEYALIKDINDSIEDAKELSKRLE--GL 277
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
HVNLIP NP+ +++RP +K + F LESH I T+IR+ G D AACGQLR F
Sbjct: 278 LCHVNLIPVNPVSERNFERPDRKRIENFRDILESHGINTTIRRELGNDIDAACGQLRRRF 337
>gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB8]
gi|81363686|sp|Q5SGZ3.1|RLMN_THET8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 355
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 149/299 (49%), Gaps = 58/299 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L W + + + + DG+VK L L D + E V +P E+ K
Sbjct: 46 LPKALREALARE-WRLSEFSLVQAFPSQDGSVKYLFTLLDGKKTEAVYMPYENRK----- 99
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+S+ VGCP C+FCATG GF RNL++ EI+ Q+L I + + + NVV MGMG
Sbjct: 100 TVCLSTMVGCPAGCTFCATGALGFGRNLTAAEILDQLLTIAYHQGLSPREIRNVVLMGMG 159
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----- 222
EP+LNL++VL+A R + K + + R +T+STVG+P I +LA L LA+
Sbjct: 160 EPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHAPD 219
Query: 223 ----------------------------------------SAGVNDQVEHAVELAELLHE 242
GVND + A LA+LL
Sbjct: 220 DETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGVNDHLWQARLLAKLLK- 278
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G HVNLIPFNP EG+ + VLAFA L+ + TSIR +RG D AACGQL
Sbjct: 279 -GLSAHVNLIPFNPWEGAPVVGTPRAGVLAFAEELKRLGVPTSIRWSRGQDVGAACGQL 336
>gi|83816743|ref|YP_446232.1| radical SAM protein [Salinibacter ruber DSM 13855]
gi|294508165|ref|YP_003572223.1| hypothetical protein SRM_02350 [Salinibacter ruber M8]
gi|123753375|sp|Q2S0P9.1|RLMN_SALRD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|83758137|gb|ABC46250.1| radical SAM enzyme, Cfr family [Salinibacter ruber DSM 13855]
gi|294344493|emb|CBH25271.1| Conserved hypothetical protein containing radical SAM domain
[Salinibacter ruber M8]
Length = 369
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 161/333 (48%), Gaps = 58/333 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W G S R +P+ R LQ TV + I AAD TVK L +
Sbjct: 41 RGDQLFNWVYGKGVSDFDRMSN-LPKRMRRGLQRDA-TVEDIEIVEQQQAADRTVKALFE 98
Query: 90 LEDNRLIETVGIPVEDEKGPMR-LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
L R ETV IP DE+G R LT CVSS+VGC + C FCATG+ GF NL+ I Q
Sbjct: 99 LPSGREAETVLIPAIDERGEARRLTVCVSSEVGCAMGCEFCATGRMGFRENLTPGAIFDQ 158
Query: 149 VLAIEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVG 202
V + E+ F VTN+VFMGMGEP+LN +VL++ L + + + + IT+STVG
Sbjct: 159 VWHMNEVAQEHFGRPVTNIVFMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVG 218
Query: 203 VPNTIKKLASYKLQSTLAI---------RS------------------------------ 223
+ IK LA +L++ LA+ RS
Sbjct: 219 LARRIKDLADDQLRTNLAVSLHAPDNETRSRIMPVNEAEKTSLPALKEALQYYFDKTGRQ 278
Query: 224 --------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
GVND A LA++ W VNL+ +NP+EG +++R + + F
Sbjct: 279 ITYEYCLFKGVNDSETDARNLADVTR-WA-PSKVNLLMYNPVEGLNFERTSEAQLDRFVQ 336
Query: 276 ALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
L +T ++R++RG D AACGQL NE + +
Sbjct: 337 VLVQEGVTVTVRRSRGQDIDAACGQLANEGEDA 369
>gi|226356358|ref|YP_002786098.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
deserti VCD115]
gi|259491983|sp|C1CVX7.1|RLMN_DEIDV RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|226318348|gb|ACO46344.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 343
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 144/282 (51%), Gaps = 64/282 (22%)
Query: 74 FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGK 133
TV +ADG+VK L L D R +E V +P D K T CVS+ VGCP RC+FCATG
Sbjct: 60 IETVRSADGSVKYLFTLTDGRQMEAVYMPYLDRK-----TICVSTMVGCPARCAFCATGA 114
Query: 134 GGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
GF RNL+ EIV QVLA+ E I + N+VFMGMGE MLN ++ ++A R L
Sbjct: 115 MGFGRNLTPGEIVAQVLAVAGGEGIGPREIRNLVFMGMGEAMLNYENTMQAARILLHPQA 174
Query: 191 IG--QRMITISTVGVPNTIKKLASYKLQSTLAIRSA------------------------ 224
+G +R +T+STVG+ I++LA+ + L I+ A
Sbjct: 175 LGMSKRRVTLSTVGIAKGIRQLAA---EDDLGIKLAISLHAPDEDTRQRIIPTGAANSIA 231
Query: 225 -------------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
G+ND + A LA++L G HVNLIP NP +G
Sbjct: 232 EIMAAARDYQAVTGRRITLEYTMLRGINDHLWQAELLADVLQ--GLVSHVNLIPMNPWDG 289
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
S ++ + + AF LE+ + S+R++RG DA AACGQL
Sbjct: 290 SGFESSTEDQIQAFYDTLEARGVDVSVRRSRGKDAGAACGQL 331
>gi|393795028|ref|ZP_10378392.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia BG20]
Length = 351
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 155/307 (50%), Gaps = 56/307 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGI--PVEDEK 107
R +P R+ L E G+ +G V + DG T KLL+ L D +ETV I P
Sbjct: 45 RQLPTMMRDKLAEEGYVIGSATEVHRVVSEDGDTTKLLLNLADGTPVETVLIQYPPSKIN 104
Query: 108 GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVV 164
G R T CVS+QVGC + C+FCATG+ GF RN+ + EIV QV+ E+ + R VTN+V
Sbjct: 105 GHPRSTICVSTQVGCAMGCTFCATGQMGFERNIKAEEIVAQVIHFAELLEKRGQHVTNLV 164
Query: 165 FMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR 222
FMGMGEP++N + A R L + IGQR ITIST+G+ + I KLA LQ LAI
Sbjct: 165 FMGMGEPLVNYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQIGLAIS 224
Query: 223 ---------------------------------------------SAGVNDQVEHAVELA 237
GVND E A EL+
Sbjct: 225 LHAPNDKLRQKLVPTAGPHSVDDLIAAGKRYFKKTGRRVTFEYALIEGVNDSPEIAKELS 284
Query: 238 ELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAA 297
LL G G HVNLIP NP G D+ RP K++VL F L + ++R +G + SAA
Sbjct: 285 LLLD--GNGSHVNLIPLNPTAG-DFHRPSKRSVLEFERILNIAGVNCTVRVEKGTEISAA 341
Query: 298 CGQLRNE 304
CGQLR +
Sbjct: 342 CGQLRTD 348
>gi|310778596|ref|YP_003966929.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
gi|309747919|gb|ADO82581.1| 23S rRNA m(2)A-2503 methyltransferase [Ilyobacter polytropus DSM
2926]
Length = 349
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 143/282 (50%), Gaps = 59/282 (20%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
+ D T K + KLED IETV + K R T C+SSQVGCP++CSFCATG GF
Sbjct: 75 SKIDYTEKFVFKLEDGNTIETVLL-----KHKERNTLCISSQVGCPVKCSFCATGLDGFV 129
Query: 138 RNLSSHEIVGQVLAIEEIF----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
RNL+ HEI+ QV ++ F +TNVVFMGMGEPMLN+++V++A L+ + + I
Sbjct: 130 RNLNVHEILNQVYTVQRRFFKSEGKNITNVVFMGMGEPMLNIENVIKAVDILSDENGMNI 189
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------------- 234
+R ITIST G+ I+KL K+ LAI + ++ A+
Sbjct: 190 SKRRITISTSGIIPGIEKLLQEKIPVELAISLHAITNEKRDALIPINRKYPLEDLYTILN 249
Query: 235 ----------------------------ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
LAE +H + H +NLIP+NP+ G+DY+RP
Sbjct: 250 EYQKITKRRITFEYVLIDKLNVTQSDADRLAEFMHSF--DHVLNLIPYNPVPGNDYERPA 307
Query: 267 KKAVLAFAG-ALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
+ + F L K+ ++R +G D ACGQLR +K
Sbjct: 308 PEKIKKFYNYLLNERKVNVTLRHEKGSDIDGACGQLRQSIKK 349
>gi|329766407|ref|ZP_08257953.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137176|gb|EGG41466.1| radical SAM protein [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 351
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 155/307 (50%), Gaps = 56/307 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGI--PVEDEK 107
R +P R+ L E G+ +G V + DG T KLL+ L D +ETV I P
Sbjct: 45 RQLPTMMRDKLAEEGYVIGSATEVHRVVSEDGDTTKLLLNLADGTPVETVLIQYPPSKIN 104
Query: 108 GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVV 164
G R T CVS+QVGC + C+FCATG+ GF RN+ + EIV QV+ E+ + R VTN+V
Sbjct: 105 GHPRSTICVSTQVGCAMGCTFCATGQMGFERNIKAEEIVAQVIHFAELLEKRGQHVTNLV 164
Query: 165 FMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR 222
FMGMGEP++N + A R L + IGQR ITIST+G+ + I KLA LQ LAI
Sbjct: 165 FMGMGEPLVNYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQIGLAIS 224
Query: 223 ---------------------------------------------SAGVNDQVEHAVELA 237
GVND E A EL+
Sbjct: 225 LHAPNDKLRQKLVPTAGPHSVDDLIAAGKRYFKKTGRRVTFEYALIEGVNDSPEIAKELS 284
Query: 238 ELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAA 297
LL G G HVNLIP NP G D+ RP K++VL F L + ++R +G + SAA
Sbjct: 285 LLLD--GNGSHVNLIPLNPTTG-DFHRPSKRSVLEFERILNIAGVNCTVRVEKGTEISAA 341
Query: 298 CGQLRNE 304
CGQLR +
Sbjct: 342 CGQLRTD 348
>gi|114566753|ref|YP_753907.1| hypothetical protein Swol_1227 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|122318220|sp|Q0AXL8.1|RLMN_SYNWW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|114337688|gb|ABI68536.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 357
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 168/332 (50%), Gaps = 58/332 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQE-AGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + S +P+S R L E A ++ R + + DG+ K L+
Sbjct: 30 RGRQVYKWIYQKECSSFYEMS-DLPRSLRKKLDEKARVSIPR--VLKQRVGKDGSRKFLM 86
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
+L+D + IE V +P +K T C+S+QVGCP+ CSFCATG+ GF RNL + EI+GQ
Sbjct: 87 ELDDKKKIECVLLPQSRDKKS-SYTLCLSTQVGCPIACSFCATGQSGFQRNLKAFEIIGQ 145
Query: 149 VLAIEEIFKHR--------VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITI 198
L ++ R ++NVV+MGMGEP+LN V+++ LN + + +GQR ITI
Sbjct: 146 YLGSKKELSKRLKSPRAELISNVVYMGMGEPLLNYDEVIKSVHMLNDPRGINLGQRRITI 205
Query: 199 STVGVPNTIKKLASYKLQSTLAIR----SAGVNDQV-----EHAVELA------------ 237
ST G IKKLA +Q TLAI + DQ+ ++ +E+
Sbjct: 206 STSGEVAGIKKLAQENIQLTLAISLHACDNSLRDQLIPLNRKYPLEVLFPAIEDYIAFTG 265
Query: 238 -------ELLHEWGRGH---------------HVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
LL E ++NLIP+N IEG +++P + F
Sbjct: 266 RRVTFEYLLLDEVNMSRNDANKMVKLLKPLLANLNLIPYNEIEGLPFKKPETAKIWQFYQ 325
Query: 276 ALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
L+ + SIR+ RG D +AACGQLR+++++
Sbjct: 326 WLQDGGLNVSIREERGSDINAACGQLRSDYRR 357
>gi|428180808|gb|EKX49674.1| hypothetical protein GUITHDRAFT_85651 [Guillardia theta CCMP2712]
Length = 413
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 168/334 (50%), Gaps = 63/334 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W GA+ + + +P+ R L E +G L I + DGT+K K
Sbjct: 72 RAKQIWQWINVKGATDFDKM-QDLPKGLRAKLAEKA-VLGNLEIAVEQVSKDGTIKRAYK 129
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D ++IE+V +P +D R TAC+SSQ GC + C FCATG+ GF+R L+S EI+ QV
Sbjct: 130 LKDGQMIESVLMPYDDG----RRTACISSQAGCAMGCVFCATGQMGFARQLTSVEILEQV 185
Query: 150 --LAIEEIFK-HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNT 206
+E + K R++NVV MGMGEP+ N +V+EA R +N+D+ IG R ITISTVG+
Sbjct: 186 QRFHVELLSKGERLSNVVLMGMGEPLGNYNNVMEAVRRINQDLGIGARHITISTVGLVPR 245
Query: 207 IKKLASYKLQSTLAIRSAGVNDQVEHAV-------ELAELLH---------------EWG 244
I++LA +Q LA+ +D+ +A+ LA+L+ EW
Sbjct: 246 IRRLAEENMQIKLAVSLHAASDEERNAIMPVNLRFPLADLMETCKFYVEKTGRRISFEWA 305
Query: 245 --------------RGH----------------HVNLIPFNPIEGSDYQRPYKKAVL-AF 273
GH HVNLIP NP G D +P K A F
Sbjct: 306 LIAGQNDTPEVANKLGHLLKWNDFNPQGLNKMCHVNLIPLNPTAGFD-GKPTKAAECDIF 364
Query: 274 AGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
L + +T + R RG+D A CGQL+++ K
Sbjct: 365 IKILSKYGVTATTRVRRGIDIDAGCGQLKSKLNK 398
>gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
Length = 356
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 158/326 (48%), Gaps = 56/326 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q A W + G ++ +P S R L + + +GRL I + + DGT K L
Sbjct: 26 PFRAKQIADWVFKKGVAEIADMTN-LPLSLRERLSKTAY-IGRLEIMKEQQSRDGTTKYL 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+L D +ETV + K + CVS+QVGC + C FCA+ GGF RNLS EI
Sbjct: 84 FELADGNTVETVFL-----KHNYGNSVCVSTQVGCKMGCLFCASTIGGFYRNLSPGEIYD 138
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPN 205
QVL IE+ K RV++VV MG GEP+ N ++VL+ R + + +G R IT+ST G+
Sbjct: 139 QVLRIEQDKKKRVSSVVIMGSGEPLDNYEAVLKFIRLITAPYALNVGMRHITLSTCGLVP 198
Query: 206 TIKKLASYKLQSTLA---------------------------------IRSAG------- 225
I KLA KL TL+ I+ G
Sbjct: 199 QIYKLAEEKLALTLSVSLHAPNNELRNKLMPVNRKYPLEELIPACHEYIKKTGRRITFEY 258
Query: 226 -----VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VND HA ELA L+ G HVNLIP NP+ + RP + V F LE +
Sbjct: 259 TLIKDVNDSQGHAEELARLIK--GMLCHVNLIPVNPVAERRWYRPSTETVKRFQTILERN 316
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQ 306
++ ++R+ G D AACGQLR ++
Sbjct: 317 RVPATVRREMGTDIDAACGQLRRKYN 342
>gi|402312276|ref|ZP_10831205.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium ICM7]
gi|400370335|gb|EJP23323.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium ICM7]
Length = 346
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 158/305 (51%), Gaps = 58/305 (19%)
Query: 53 VPQSFRNDLQEAG--WTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ ++FR L+E+ ++ + IF++ DGT K L LED +IE+V + E
Sbjct: 47 LSKAFREKLKESTSLTSLKAVEIFKS--KLDGTQKYLFALEDGNIIESVRMKYEHGN--- 101
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
+ C+SSQVGC + C FCA+ G RNLS+ E++ Q+ +I+++ R++N+V MG GE
Sbjct: 102 --SVCISSQVGCRMGCKFCASTLDGLVRNLSASEMLDQIYSIQKLLGERISNIVVMGSGE 159
Query: 171 PMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA-------- 220
PM N ++++ + ++ D + I QR IT+ST G+ I+ LA L TLA
Sbjct: 160 PMDNYDNIVKFVKIISSDMGLNISQRNITVSTCGIVPKIRALADEGLSITLALSLHAPND 219
Query: 221 -IRS------------------------------------AGVNDQVEHAVELAELLHEW 243
IR AGVND ++ A+ L +L++
Sbjct: 220 EIRKTIMPVANKYALKDVISACDYYFKKTGRRVSYEYSLVAGVNDNIKEAMNLVKLVN-- 277
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
GR H+NLIP NPI+ D+++ K + AF LE HK+ ++R+ G D ACGQLR
Sbjct: 278 GRNIHINLIPVNPIKERDFKQSDKLKIKAFKDFLEKHKVNATVRREMGRDIDGACGQLRR 337
Query: 304 EFQKS 308
F +S
Sbjct: 338 RFIQS 342
>gi|337287595|ref|YP_004627067.1| Ribosomal RNA large subunit methyltransferase N
[Thermodesulfobacterium sp. OPB45]
gi|334901333|gb|AEH22139.1| Ribosomal RNA large subunit methyltransferase N
[Thermodesulfobacterium geofontis OPF15]
Length = 362
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 162/331 (48%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + + T +P+S R L E +++ I DGTVK +K
Sbjct: 27 RGEQIFHW-ITCKNAITFEEMTDLPKSLRTKLSE-NFSLELPEIVDKEEDIDGTVKFALK 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+DN LIETV IP +D T CVS+QVGCP+ C FC TGK GF RNL +EI+ QV
Sbjct: 85 LKDNNLIETVIIPEKD-----HYTLCVSTQVGCPIGCKFCVTGKIGFKRNLEVYEIISQV 139
Query: 150 LAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
+ K + + N+VFMGMGEP+LNLK++++A + L K ++ +T+STVG
Sbjct: 140 VIARRYLKEKEEELPLRNIVFMGMGEPLLNLKNLIKALKILAHPKGFNYSRKRLTVSTVG 199
Query: 203 VPNTIKKLASYKLQSTLAIR---------------------------------------- 222
+ ++ LA + + LAI
Sbjct: 200 LLKEMEILAK-EFSTALAISLHAPTDEIRRELIPIAKKYSVEELILACKKFPRIKNSRTT 258
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
VND +E A +LA+LL G VNLIPFNP ++RP ++ V F L
Sbjct: 259 IEYVIIKDVNDSLESAKKLADLLK--GYPFKVNLIPFNPHPEIPFERPSQEVVERFQKYL 316
Query: 278 ESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
S I T++R+++GL AACGQL + KS
Sbjct: 317 LSRGILTTVRKSKGLGIDAACGQLGAKILKS 347
>gi|345887545|ref|ZP_08838720.1| ribosomal RNA large subunit methyltransferase N [Bilophila sp.
4_1_30]
gi|345041710|gb|EGW45844.1| ribosomal RNA large subunit methyltransferase N [Bilophila sp.
4_1_30]
Length = 357
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 163/308 (52%), Gaps = 57/308 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
V + R L E V LP TV T++DGT KLL++L D L+ETV +P + G +R
Sbjct: 48 VSKQLRAKLAEVAEIV--LPEIVTVQTSSDGTEKLLLRLRDGTLVETVILPSTGQDGSVR 105
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVL-AIEEIFKHRVT-----NVVF 165
+ CVSSQ+GC + C+FC+TG GF RN+++ EI+ QVL A + +R+ N+VF
Sbjct: 106 IAQCVSSQIGCAMGCTFCSTGTMGFIRNMTAGEILSQVLVARMRLGDNRIDHPIIRNLVF 165
Query: 166 MGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKL------------- 210
MGMGEP+LNL+ A LN D + R IT+ST G+ +++L
Sbjct: 166 MGMGEPLLNLRETTRALEMLNHDKGMDFSPRRITVSTCGIKAGLRELGDSGLAFLAVSLH 225
Query: 211 --------------ASYKLQSTLAIRSA-----------------GVNDQVEHAVELAEL 239
A++ L +A + GVNDQ EHA ELA+L
Sbjct: 226 APNQELRAKIMPKAANWHLDDLMATLESYPLKTREHITFEYLLLGGVNDQPEHARELAKL 285
Query: 240 LHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
+ +G +NLI +NP E Y+ P + +LAF L S +T +R+++G D AACG
Sbjct: 286 VSRV-KG-KLNLIAYNPSETQLYKAPTEADILAFEKILWSKGVTAILRKSKGQDIKAACG 343
Query: 300 QLRNEFQK 307
QL++++++
Sbjct: 344 QLKSDWER 351
>gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
Length = 355
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 166/330 (50%), Gaps = 62/330 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W R + +P+ R L++ + + L + A+DGT K L K
Sbjct: 22 RVKQLYNWVYRKYVDDFEKMSN-LPKDLREKLKKE-FYINPLELINHEIASDGTEKFLFK 79
Query: 90 LEDNRLIETVGIPVEDE------KGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
L DN IETV I ++D+ K + T CVS+QVGC + C+FC T KGGF RNLS+
Sbjct: 80 LNDNHTIETVLIKMKDDRVENGKKKEAKYTVCVSTQVGCKVGCAFCLTAKGGFVRNLSAG 139
Query: 144 EIVGQVLAIEEIFK----HRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMIT 197
EIV QV +++ FK ++ NVVFMGMGEP+ N ++++A + + + I R T
Sbjct: 140 EIVAQVWFMKK-FKNFDENKALNVVFMGMGEPLDNYNNLVKAIKIIAHTDGLNIAPRRQT 198
Query: 198 ISTVGVPNTIKKLA----------------------------SYKLQSTL-AIRS----- 223
+ST G+ IKKL +Y +QS + AIR
Sbjct: 199 VSTSGIAPKIKKLGEENLGVNLAISLHAVDDKLREQLIPLNKAYNIQSVIEAIREFPIDK 258
Query: 224 -----------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
VND ++ A +L +LL+ G VNLI FNP GS ++RP ++ +
Sbjct: 259 RKKVMFEYLVIKDVNDNLDSAKKLVKLLN--GIPSKVNLIYFNPYPGSPFKRPDEETMKK 316
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLR 302
F L IT +IRQ++G+D SAACGQLR
Sbjct: 317 FQRYLLDRGITCTIRQSKGIDISAACGQLR 346
>gi|431796136|ref|YP_007223040.1| 2-vinyl bacteriochlorophyllide hydratase [Echinicola vietnamensis
DSM 17526]
gi|430786901|gb|AGA77030.1| 23S rRNA m2A2503 methyltransferase [Echinicola vietnamensis DSM
17526]
Length = 352
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 156/296 (52%), Gaps = 58/296 (19%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
++ +A +T+ L + ++DGT+K +KL D++++E+V IP R+TACVSSQ
Sbjct: 58 EMLKANFTINHLKVDLMQHSSDGTIKNAVKLYDDKIVESVLIPT-----SKRITACVSSQ 112
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----EEIFKHRVTNVVFMGMGEPMLNL 175
VGC L C+FCAT + RNL+ EI QV+AI E+ F+ +TN+VFMGMGEP+LN
Sbjct: 113 VGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKDEAEKYFQRPLTNIVFMGMGEPLLNY 172
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAI---------RS- 223
+V+ A + +G R IT+STVG+P IKK+A +++ LAI RS
Sbjct: 173 ANVISAIDKITAPEGLGMAARRITLSTVGIPKMIKKMADDEVKFNLAISLHSAINSTRSR 232
Query: 224 -----------------------------------AGVNDQVEHAVELAELLHEWGRGHH 248
G+ND EHA+ LA+
Sbjct: 233 LMPINDKSPVEELADSLKYWYHKTQRKVTYEYVIWDGINDDEEHALALAKFCKHI--PSK 290
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
VN+I +NPI+ ++++ ++AV + LE I +R++RG D AACGQL N+
Sbjct: 291 VNIIQYNPIDEGEFRQASQEAVDMYVRILEGRGIVAKVRKSRGQDIDAACGQLANK 346
>gi|206890968|ref|YP_002247985.1| radical SAM protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 342
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 147/296 (49%), Gaps = 56/296 (18%)
Query: 55 QSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTA 114
+S R E + +GR+ +F + DGT+K L +LED IE+V I +D RLT
Sbjct: 51 KSLRERFSEK-YYIGRINLFDKRISIDGTIKFLWELEDGEKIESVLISDKD-----RLTL 104
Query: 115 CVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEP 171
CVSSQVGC L+C FC TGK G RNL + EIV Q + + +I + ++TN+VFMGMGEP
Sbjct: 105 CVSSQVGCMLKCKFCLTGKIGLKRNLKAWEIVDQYIQVSKIIQKENRKITNIVFMGMGEP 164
Query: 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKL--------------------- 210
+LN ++V+EA L + IT+ST G+ IK+L
Sbjct: 165 LLNFENVVEALWRLKDLILFSPSRITLSTAGIIPAIKELPYKAPAIKLAISLNATDNKTR 224
Query: 211 -------ASYKLQSTLA-----------------IRSAGVNDQVEHAVELAELLHEWGRG 246
Y L + I G+N + A L+ELL G
Sbjct: 225 SYLMPINKKYPLHELIKTLRDYPLKPRHRITFEYILIKGINCSEKDAYRLSELLK--GIP 282
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+NLIPFNP EG +++RP +L F L + + IR+++G D AACGQL+
Sbjct: 283 SKINLIPFNPWEGCEFERPEDNEILNFQEILAARGYSVFIRKSKGTDILAACGQLK 338
>gi|345892533|ref|ZP_08843352.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio sp.
6_1_46AFAA]
gi|345047025|gb|EGW50894.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio sp.
6_1_46AFAA]
Length = 353
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 147/282 (52%), Gaps = 54/282 (19%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R ++DGT K L++LED L+ETV IP + +G R T C+SSQVGC + C+FCATG
Sbjct: 67 VARVQESSDGTTKFLLRLEDGALVETVLIPSDSREGVRRWTQCLSSQVGCAMGCTFCATG 126
Query: 133 KGGFSRNLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLN 186
GF RN++ EI+GQ+L A E + +R + N+VFMGMGEP+LNL+ V+ A + LN
Sbjct: 127 DMGFERNMTMGEILGQILVAREHLGDNRPDWPVLRNLVFMGMGEPLLNLREVMRALQSLN 186
Query: 187 KD--VQIGQRMITISTVGVPNTIKKLASYKL----------------------------Q 216
D + R IT+ST G+ + +L + L Q
Sbjct: 187 NDKGLNFSPRRITVSTCGIEKGLAELGASGLAYLAVSLHAPTQELRARIMPKAARWPLDQ 246
Query: 217 STLAIRS----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
A++S G+ND A ELA L+ + +NLI +NP EG+
Sbjct: 247 LLAALKSYPLKTRERITFEYLLLGGINDGPGQAEELARLVAD--IKGKLNLIVYNPAEGA 304
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y P + VLAF L IT +R+++G D AACGQL+
Sbjct: 305 PYAAPDEARVLAFEQCLWKRHITAIVRKSKGQDIKAACGQLK 346
>gi|303326495|ref|ZP_07356938.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
gi|302864411|gb|EFL87342.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. 3_1_syn3]
Length = 353
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 147/282 (52%), Gaps = 54/282 (19%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R ++DGT K L++LED L+ETV IP + +G R T C+SSQVGC + C+FCATG
Sbjct: 67 VARVQESSDGTTKFLLRLEDGALVETVLIPSDSREGVRRWTQCLSSQVGCAMGCTFCATG 126
Query: 133 KGGFSRNLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLN 186
GF RN++ EI+GQ+L A E + +R + N+VFMGMGEP+LNL+ V+ A + LN
Sbjct: 127 DMGFERNMTMGEILGQILVAREHLGDNRPDWPVLRNLVFMGMGEPLLNLREVMRALQSLN 186
Query: 187 KD--VQIGQRMITISTVGVPNTIKKLASYKL----------------------------Q 216
D + R IT+ST G+ + +L + L Q
Sbjct: 187 NDKGLNFSPRRITVSTCGIEKGLAELGASGLAYLAVSLHAPTQELRARIMPKAARWPLDQ 246
Query: 217 STLAIRS----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
A++S G+ND A ELA L+ + +NLI +NP EG+
Sbjct: 247 LLAALKSYPLKTRERITFEYLLLGGINDGPGQAGELARLVAD--IKGKLNLIVYNPAEGA 304
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y P + VLAF L IT +R+++G D AACGQL+
Sbjct: 305 PYAAPDEARVLAFEQCLWKRHITAIVRKSKGQDIKAACGQLK 346
>gi|317485889|ref|ZP_07944749.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
gi|316922863|gb|EFV44089.1| cfr family radical SAM enzyme [Bilophila wadsworthia 3_1_6]
Length = 404
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 163/308 (52%), Gaps = 57/308 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
V + R L E V LP TV T++DGT KLL++L D L+ETV +P + G +R
Sbjct: 95 VSKQLRAKLAEVAEIV--LPEIVTVQTSSDGTEKLLLRLRDGALVETVILPSTGQDGSVR 152
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVL-AIEEIFKHRVT-----NVVF 165
+ CVSSQ+GC + C+FC+TG GF RN+++ EI+ QVL A + +R+ N+VF
Sbjct: 153 IAQCVSSQIGCAMGCTFCSTGTMGFIRNMTAGEILSQVLVARMRLGDNRIDHPIIRNLVF 212
Query: 166 MGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGV-------------------- 203
MGMGEP+LNL+ A LN D + R IT+ST G+
Sbjct: 213 MGMGEPLLNLRETTRALEMLNHDKGMDFSPRRITVSTCGIKAGLRELGDSGLAFLAVSLH 272
Query: 204 -PN------TIKKLASYKLQSTLAIRSA-----------------GVNDQVEHAVELAEL 239
PN + K A++ L +A + GVNDQ EHA ELA+L
Sbjct: 273 APNQDLRAKIMPKAANWHLDDLMATLESYPLKTREHITFEYLLLGGVNDQPEHARELAKL 332
Query: 240 LHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
+ +G +NLI +NP E Y+ P + +LAF L S +T +R+++G D AACG
Sbjct: 333 VSRV-KG-KLNLIAYNPSETQLYKAPTEADILAFEKILWSKGVTAILRKSKGQDIKAACG 390
Query: 300 QLRNEFQK 307
QL++++++
Sbjct: 391 QLKSDWER 398
>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|205829911|sp|A0LQM1.1|RLMN_SYNFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 342
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 152/297 (51%), Gaps = 56/297 (18%)
Query: 57 FRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACV 116
FR L E G + L + + A DGT K L L D IE V IP R T CV
Sbjct: 53 FRVQL-EHGVELDALSVLKKEQADDGTSKYLFGLRDGHSIEAVLIP-----DLPRSTLCV 106
Query: 117 SSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGEPMLN 174
SSQVGC L C FC TG GF RNLS+ EIV QV ++ + R+TN+VFMGMGEP+ N
Sbjct: 107 SSQVGCALGCKFCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIVFMGMGEPLAN 166
Query: 175 LKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLA--------------------- 211
L SVL A R + + + R IT+ST G+ +++L
Sbjct: 167 LDSVLRAIRVIAEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSLHAAENELRAE 226
Query: 212 ------SYKLQSTLA-----------------IRSAGVNDQVEHAVELAELLHEWGRGHH 248
+Y L+ +A I G+ND + A +L +LLH G
Sbjct: 227 LMPVNRTYPLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQLVKLLH--GIRAK 284
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
VNL+PFNP GS +++P ++ VLAF AL++ +ITT +R++RG + AACGQL E+
Sbjct: 285 VNLMPFNPHPGSVFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACGQLVAEY 341
>gi|352106567|ref|ZP_08961510.1| hypothetical protein HAL1_19551 [Halomonas sp. HAL1]
gi|350597610|gb|EHA13738.1| hypothetical protein HAL1_19551 [Halomonas sp. HAL1]
Length = 399
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 145/279 (51%), Gaps = 60/279 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K ++++ED +ETV IP E+ K R T CVSSQVGC L CSFC+TGK GF
Sbjct: 103 TSSDGTRKWVLEVEDGSYVETVLIPAENGK---RRTLCVSSQVGCSLDCSFCSTGKQGFQ 159
Query: 138 RNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV + R VTNVV MGMGEP+LN +V+ A + + D
Sbjct: 160 RNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNVVPAMKLMLDDNG 219
Query: 191 IG--QRMITISTVGVPNTIKKL--------------ASYKLQSTLA-------IRS---- 223
G +R +T+ST GV I KL ++ +L++TL IR+
Sbjct: 220 YGLSKRRVTLSTSGVVPMIDKLGDEMDVSLAISLHASNDELRNTLVPINRKYNIRALLDA 279
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+NDQ EHA +LA LL E +NLIPFNP S Y
Sbjct: 280 CHRYLAKCPDNRQVTIEYTLIKDINDQQEHAEQLAALLKEL--PCKINLIPFNPFPNSGY 337
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + V+ F L ++R TRG D AACGQL
Sbjct: 338 EKPSRNQVMRFQQWLYDLNYNATVRTTRGEDIDAACGQL 376
>gi|46581308|ref|YP_012116.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris str. Hildenborough]
gi|387154527|ref|YP_005703463.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
gi|81404173|sp|Q727F1.1|RLMN_DESVH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|46450729|gb|AAS97376.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234971|gb|ADP87825.1| radical SAM enzyme, Cfr family [Desulfovibrio vulgaris RCH1]
Length = 364
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 55/282 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L++L D L+ETV IP +G +R+T C+S QVGC + C+FC+TG GF R
Sbjct: 73 SADGTTKFLLRLADGALVETVLIPSASREGTLRITQCLSCQVGCAMGCTFCSTGTMGFER 132
Query: 139 NLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
N++ EI+GQVL A + R + N+VFMGMGEP+LNL V+ + R LN + +
Sbjct: 133 NMTMGEILGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLS 192
Query: 191 IGQRMITISTVGV---------------------PNT------------------IKKLA 211
R IT+ST G+ PN I L
Sbjct: 193 FSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALE 252
Query: 212 SYKLQSTLAIR-----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
SY L++ + GVND +EHA EL L+ +NLI +NP EG Y P
Sbjct: 253 SYPLKTRERVTFEYLLLGGVNDGIEHARELVRLVSR--TKGKLNLIVYNPAEGDPYDAPT 310
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR-NEFQK 307
+ +LAF L S IT IR+++G D AACGQL+ +E Q+
Sbjct: 311 PERILAFEQYLWSKNITAIIRKSKGQDIKAACGQLKASELQR 352
>gi|295135350|ref|YP_003586026.1| radical SAM protein [Zunongwangia profunda SM-A87]
gi|294983365|gb|ADF53830.1| radical SAM superfamily protein, UPF0063 [Zunongwangia profunda
SM-A87]
Length = 348
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 155/324 (47%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W GA Q+ R L E + + + + + ++DGT+K +K
Sbjct: 29 RGSQVYEWLWSKGAHDFDEMTNISKQT-RAMLAE-NFVINHIRVDQMQRSSDGTIKNAVK 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L DN +E+V IP P R TACVSSQVGC L C FCAT + RNL+ EI QV
Sbjct: 87 LHDNLTVESVLIPT-----PTRTTACVSSQVGCSLDCQFCATARLKRMRNLNPDEIYDQV 141
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
+AI+ F ++N+VFMGMGEP++N +V++A + D +G + ITIST GV
Sbjct: 142 VAIDNESRLYFDRPLSNIVFMGMGEPLMNYNNVMKAVEKITSDEGLGMSAKRITISTSGV 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH------ 247
P IKKLA + + LA+ D+V + +L E L W
Sbjct: 202 PKMIKKLADDEAKIKLAVSLHAATDEVRTRIMPFNETFPLEDLREALEYWYSKTKSRITY 261
Query: 248 ---------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ D+Q+ +A + LE +
Sbjct: 262 EYIVWKDVNDTRKDAMALVRFCKFVPCKVNLIEYNPIDDGDFQQASSQATAMYQQLLEQN 321
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
IT ++R++RG D AACGQL N+
Sbjct: 322 GITVTVRRSRGKDIDAACGQLANK 345
>gi|120601511|ref|YP_965911.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
vulgaris DP4]
gi|205829747|sp|A1VAL8.1|RLMN_DESVV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120561740|gb|ABM27484.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfovibrio vulgaris DP4]
Length = 364
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 55/282 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L++L D L+ETV IP +G +R+T C+S QVGC + C+FC+TG GF R
Sbjct: 73 SADGTTKFLLRLADGALVETVLIPSASREGTLRITQCLSCQVGCAMGCTFCSTGTMGFER 132
Query: 139 NLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
N++ EI+GQVL A + R + N+VFMGMGEP+LNL V+ + R LN + +
Sbjct: 133 NMTMGEILGQVLVARAHLGDSRPDHPILRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLS 192
Query: 191 IGQRMITISTVGV---------------------PNT------------------IKKLA 211
R IT+ST G+ PN I L
Sbjct: 193 FSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQEIRKRIMPKAAHWHLDDLITALE 252
Query: 212 SYKLQSTLAIR-----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
SY L++ + GVND +EHA EL L+ +NLI +NP EG Y P
Sbjct: 253 SYPLKTRERVTFEYLLLGGVNDGIEHARELVRLVSR--TKGKLNLIVYNPAEGDPYDAPT 310
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR-NEFQK 307
+ +LAF L S IT IR+++G D AACGQL+ +E Q+
Sbjct: 311 PERILAFEQYLWSKNITAIIRKSKGQDIKAACGQLKASELQR 352
>gi|374262913|ref|ZP_09621473.1| radical SAM protein [Legionella drancourtii LLAP12]
gi|363536729|gb|EHL30163.1| radical SAM protein [Legionella drancourtii LLAP12]
Length = 378
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 146/282 (51%), Gaps = 61/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K L+KL+ IETV IP E +G T CVSSQVGC L CSFC+T K GF+R
Sbjct: 76 SSDGTHKWLLKLDCGNCIETVFIP-EANRG----TLCVSSQVGCALNCSFCSTAKQGFNR 130
Query: 139 NLSSHEIVGQV-LAIEE------IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS+ EI+GQV LA+ E + R+TNVV MGMGEP+LN +V+ A + D
Sbjct: 131 NLSTAEIIGQVWLAVRELSTNQGVHDKRLTNVVMMGMGEPLLNFDNVVSAMNIMMDDFAY 190
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV +++L Y L +A
Sbjct: 191 GLSKRRVTLSTSGVLPDLERLRQVSPVALAVSLHAPNDELRNELVPINKKYPLAQLMALC 250
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ GVNDQ EHA +L +LL + VNLIPFNP + YQR
Sbjct: 251 KIYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIKLLRD--VPAKVNLIPFNPFPMTQYQR 308
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+ A+ AF L ++ I T R+TRG D AACGQL E +
Sbjct: 309 SSQAAIDAFRDKLIANGINTITRKTRGDDIDAACGQLAGEVK 350
>gi|376317306|emb|CCG00673.1| Radical SAM superfamily protein [uncultured Flavobacteriia
bacterium]
Length = 345
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 167/335 (49%), Gaps = 60/335 (17%)
Query: 23 FFFTCPS----RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVT 78
FFF + RG Q W + + + T + + R ++ EA + + + +
Sbjct: 17 FFFVENNDQAFRGNQVYEW-LWSKSLHTFEEMTNISKETR-EMLEANFVINHIKVDSMQK 74
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K IKL D ++E+V IP E R TACVSSQVGC L C FCAT + R
Sbjct: 75 SKDGTIKNGIKLHDGLIVESVLIPTEK-----RTTACVSSQVGCSLDCKFCATSRLKRMR 129
Query: 139 NLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ- 193
NL+ EI QV+ I++ F H+++N+VFMGMGEP++N K+++++ + +G
Sbjct: 130 NLNPDEIYDQVVIIDKQSRLYFNHKLSNIVFMGMGEPLMNYKNMMKSIEMITSPEGLGMS 189
Query: 194 -RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHE 242
+ IT+ST GVP IK +A +++ LA+ D+V ++ +L E L
Sbjct: 190 SKRITVSTSGVPKMIKMMADEEVKFNLAVSLHSAIDEVRTSIMPFNATFPLKDLKESLIY 249
Query: 243 W----GRGH-----------------------------HVNLIPFNPIEGSDYQRPYKKA 269
W GR +NLI +NPI+ ++Q+ + A
Sbjct: 250 WYEKTGRAITYEYIVWDGINDKKEDIKALVAFCKAVPCKINLIEYNPIDDGEFQQAHSSA 309
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ + LE H IT ++R++RG D AACGQL N+
Sbjct: 310 INNYISNLEMHDITVNVRRSRGKDIDAACGQLANK 344
>gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581]
gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581]
Length = 378
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 143/279 (51%), Gaps = 60/279 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K ++++ED +ETV IP ++ K R T CVSSQVGC L CSFC+TGK GF
Sbjct: 82 TSSDGTRKWVLEVEDGSYVETVLIPADNGK---RRTLCVSSQVGCSLDCSFCSTGKQGFQ 138
Query: 138 RNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKD-- 188
RNL++ EI+GQV F R VTNVV MGMGEP+LN +V+ A + + D
Sbjct: 139 RNLTAAEIIGQVWVASNSFGPRHDTANRPVTNVVMMGMGEPLLNYDNVVPAMKLMLDDNG 198
Query: 189 VQIGQRMITISTVGVPNTIKKL--------------ASYKLQSTLA-------IRS---- 223
+ +R +T+ST GV + +L A+ +L+S L IR+
Sbjct: 199 YSLSKRRVTLSTSGVVPMLDRLGDELDVSLAISLHAANDELRSELVPLNRKYNIRTLLDA 258
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
VNDQ EHA +LAELL E +NLIPFNP S Y
Sbjct: 259 CQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQLAELLQEL--PSKINLIPFNPFPHSGY 316
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ P + V F L T IR TRG D AACGQL
Sbjct: 317 ETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAACGQL 355
>gi|320101749|ref|YP_004177340.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
43644]
gi|319749031|gb|ADV60791.1| 23S rRNA m(2)A-2503 methyltransferase [Isosphaera pallida ATCC
43644]
Length = 400
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 158/321 (49%), Gaps = 57/321 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P R L E+ W V + + R TA DGT KLL++ D R IETV + ED R
Sbjct: 77 LPAGLRLAL-ESSWAVYQTRVIRRQTATDGTDKLLLECRDGRRIETVLMREED-----RR 130
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGE 170
T CVSSQVGC + C FCA+G G RNL+ EI ++L ++ R+TN+V MGMGE
Sbjct: 131 TVCVSSQVGCGMGCVFCASGLKGVERNLTVGEITEELLHARDLLPEHERLTNIVVMGMGE 190
Query: 171 PMLNLKSVLEA--HRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
+ NL++++ A C + + QR +TISTVG+P IK+LA+ + LA+
Sbjct: 191 SLANLENLIAALDRICSPSGLGLSQRAVTISTVGLPEKIKRLAALDRRYHLAVSLHAPTE 250
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
G+ND+ A +L LL
Sbjct: 251 ELRDQLVPINHKVGLRAVMEAADHYFAVTGRQVTFEYVLLGGINDRDRDARDLVALLA-- 308
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
GR HVNLIP+NP+ G Y+RP + + F ++ S+R+T+G AACGQLR
Sbjct: 309 GRKAHVNLIPYNPVAGLPYERPAPRDLDRFVRRCRQGGLSVSVRKTKGKRIDAACGQLRR 368
Query: 304 EFQKSPLRIDSSNSSSESDIA 324
++ + + N+ + ++A
Sbjct: 369 RIAEATIPASAGNAGAAIELA 389
>gi|328951573|ref|YP_004368908.1| ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
Length = 353
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 151/299 (50%), Gaps = 58/299 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R +L W + + + +ADG+ K L L D R E V +P +D R
Sbjct: 58 LPRALRAELAHT-WRISEFSLVQAFPSADGSTKYLYTLHDGRQTEAVYMPYKD-----RR 111
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+SS VGCP C+FCATG+ F RNL++ EI+ Q+LA + I + NVV MGMG
Sbjct: 112 TICISSMVGCPAGCTFCATGQMRFGRNLTAPEILDQLLAAAYHQGISPREIRNVVLMGMG 171
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI------ 221
EP+LNL +VL+A R + + + + R IT+STVG+P I +LA + LA+
Sbjct: 172 EPLLNLTNVLKAVRRMIHKQALAMSPRRITLSTVGIPRGIYRLAEEDVGVKLALSLHAPD 231
Query: 222 ------------RSA---------------------------GVNDQVEHAVELAELLHE 242
R A GVND + A LA+ H
Sbjct: 232 DETRRRIIPTAHRYAIEEIMDAVRHYYRRTKRRVTLEYTLLRGVNDHLWQAKMLAK--HT 289
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G HVNLIPFNP EG+ ++ ++ + FA LE+ I S+R +RG D AACGQL
Sbjct: 290 RGLTAHVNLIPFNPWEGAPHEGSSREQIRRFAAVLEAAGIPVSVRWSRGRDVGAACGQL 348
>gi|345859749|ref|ZP_08812083.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
gi|344327206|gb|EGW38650.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
Length = 353
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 141/287 (49%), Gaps = 53/287 (18%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
L R + DGT K L +LED IE V + R T CVS+QVGC + C+FCA
Sbjct: 65 LERVREQRSEDGTRKYLFRLEDGETIECVLMDYARTSSRDRHTVCVSTQVGCAVGCAFCA 124
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCL 185
TG GF RNL+ EIVGQVL I + +VTN+VFMGMGEP+LN VL+A L
Sbjct: 125 TGLEGFRRNLTVAEIVGQVLDITHFVRQEDPEFQVTNIVFMGMGEPLLNYDQVLQAILLL 184
Query: 186 N--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQV------------- 230
N + + IG R +TIST GV I +LA Q LA+ D+V
Sbjct: 185 NHGQGLNIGMRRMTISTSGVVPRIIQLAKDNPQVGLAVSLHAAQDKVRNDLIPMNRRYPL 244
Query: 231 -------------------------------EHAVELAELLHEWGRGHHVNLIPFNPIEG 259
E A LA LL G+ HVNLIP NP+ G
Sbjct: 245 AQLMEACQEYTQITHRRITFEVALTAENAKREEAQALARLLR--GQLGHVNLIPVNPVAG 302
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+ +RP + + FA LE I+ S R+ RG+D AACGQLR +++
Sbjct: 303 TGMERPDPELMRRFAQVLEDAGISVSSREERGVDIDAACGQLRRQWE 349
>gi|217077834|ref|YP_002335552.1| ribosomal RNA large subunit methyltransferase N [Thermosipho
africanus TCF52B]
gi|217037689|gb|ACJ76211.1| radical SAM enzyme, Cfr family [Thermosipho africanus TCF52B]
Length = 341
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 140/273 (51%), Gaps = 55/273 (20%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
++ D T K L +L D IE+V + E R+TAC+S+QVGCP++CSFCATG+ G+
Sbjct: 72 ISKIDRTTKFLWELPDGNTIESVALFHEG-----RVTACISTQVGCPVKCSFCATGQSGY 126
Query: 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQR 194
RNL++ EIV Q+L IE K RV NVV+MGMGEP+LN ++ +++ + LN K IG R
Sbjct: 127 VRNLTAGEIVSQILGIEVHRKIRVGNVVYMGMGEPLLNYENTIKSVKMLNNKKMFGIGIR 186
Query: 195 MITISTVGVPNTIKKLASYKLQSTLA---------------------------------- 220
ITISTVGVP I LA L LA
Sbjct: 187 RITISTVGVPEKIIDLAESGLDVKLALSLHATTNFKRDQIIPLNKQYSIEELIFAVKKYQ 246
Query: 221 -----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
I ND E A +LAELL G +VNLIP NP+ +Y RP + A
Sbjct: 247 EITNNRVTIEYILIKEFNDYPEDAEKLAELLK--GLSVYVNLIPVNPV-NPNYYRPSRWA 303
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ F L + I IR +G D AACGQLR
Sbjct: 304 MERFKEILTKYGIECEIRAEKGTDIDAACGQLR 336
>gi|109899434|ref|YP_662689.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
atlantica T6c]
gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 380
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 157/330 (47%), Gaps = 65/330 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W +AG S + + ++ R L+ A V I A+DGT+K
Sbjct: 33 PFRADQMMKWIYQAGVSDFDQMTN-LNKALREKLK-AQCEVKAPEIAYQQGASDGTIKFA 90
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++LE + +ETV IP ED R T CVSSQVGC L C+FC+T + GF+RNLS EI+G
Sbjct: 91 LRLEGGQEVETVWIPDED-----RATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIG 145
Query: 148 QVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + K +TNVV MGMGEP+LNLK+V+ A + D+ G +R +T+
Sbjct: 146 QVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTL 205
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + L Y +Q LA
Sbjct: 206 STSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNA 265
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A ELA++L + +NLIPFNP GS Y R +
Sbjct: 266 NQGKVTVEYVMLNGINDSTDQAHELAKVLAD--TPCKINLIPFNPYPGSPYSRSSNSRID 323
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
FA L S+ + +R+TRG D AACGQL
Sbjct: 324 RFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|320334270|ref|YP_004170981.1| ribosomal RNA large subunit methyltransferase N [Deinococcus
maricopensis DSM 21211]
gi|319755559|gb|ADV67316.1| Ribosomal RNA large subunit methyltransferase N [Deinococcus
maricopensis DSM 21211]
Length = 346
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 161/328 (49%), Gaps = 70/328 (21%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAA--DGTVKLL 87
R +Q W GA + +P + R +L A +++ P T TA DG+VK L
Sbjct: 18 RRKQLLQWVFEKGAGRFEDMTN-LPANVRAELA-ASYSLD--PFLHTETARSRDGSVKYL 73
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
L D + +E V +P D K T CVS+ VGCP +C+FCATG GF RNL++ EIVG
Sbjct: 74 FTLHDGKQMEAVYMPYLDRK-----TVCVSTMVGCPAKCAFCATGAMGFGRNLTAGEIVG 128
Query: 148 QVLAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QIGQRMITISTVG 202
QVLA+ E + + ++VFMGMGE +LN +V+ A R L + + +R +T+STVG
Sbjct: 129 QVLAVARGEGLPPRDIRSLVFMGMGEGLLNYDNVMLASRILLHPLAFDMSKRRVTLSTVG 188
Query: 203 VPNTIKKLASYKLQSTLAIRSA-------------------------------------- 224
+P I+KLA + L IR A
Sbjct: 189 LPKGIRKLAR---EDDLGIRLAISLHAPDEETRQRIIPTGHRNSIADIMDAAREYQDVTG 245
Query: 225 -----------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAF 273
GVND + A ELA LL G HVNLIP NP EGS ++ + + AF
Sbjct: 246 RRITFEYSMLRGVNDHLWQAEELAGLLR--GLVAHVNLIPMNPWEGSGFEESTEAQIQAF 303
Query: 274 AGALESHKITTSIRQTRGLDASAACGQL 301
L + + S+R++RG DA AACGQL
Sbjct: 304 YDVLSARGVEVSVRRSRGRDAGAACGQL 331
>gi|88803607|ref|ZP_01119132.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
gi|88780619|gb|EAR11799.1| radical SAM enzyme, Cfr family protein [Polaribacter irgensii 23-P]
Length = 345
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 164/341 (48%), Gaps = 72/341 (21%)
Query: 23 FFFTCPS----RGRQRAPW------HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP 72
FFF + RG Q W H + + R ++ A + + +
Sbjct: 17 FFFVENNDQAFRGNQVYEWLWSKSLHTFDAMTNISKETR--------EMLAANFVINHIK 68
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ + DGT+K IKL D ++E+V IP E R TACVSSQVGC L C FCAT
Sbjct: 69 VDSMQKSKDGTIKNGIKLHDGLIVESVLIPTEK-----RTTACVSSQVGCSLDCKFCATS 123
Query: 133 KGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD 188
+ RNL+ EI QV+ I++ F H+++N+VFMGMGEP++N K+++++ + +
Sbjct: 124 RLKRMRNLNPDEIYDQVVVIDKQSQLYFGHKLSNIVFMGMGEPLMNYKNMMKSIQMITSP 183
Query: 189 VQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------EL 236
+G + IT+ST GVP IKK+A +++ LA+ D+V ++ +L
Sbjct: 184 EGLGMSSKRITVSTSGVPKMIKKMADEEVKFNLAVSLHSAIDEVRTSIMPFNATFPLKDL 243
Query: 237 AELLHEW----GRGH-----------------------------HVNLIPFNPIEGSDYQ 263
E L W GR VNLI +NPI+ ++Q
Sbjct: 244 KESLEYWYEKTGRAITYEYIVWDGINDRKEDIKALVAFCKAIPCKVNLIEYNPIDDGEFQ 303
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ A+ + LE H IT ++R++RG D AACGQL N+
Sbjct: 304 QASSAAINNYISNLEMHDITVNVRRSRGKDIDAACGQLANK 344
>gi|384170964|ref|YP_005552341.1| hypothetical protein [Arcobacter sp. L]
gi|345470574|dbj|BAK72024.1| conserved hypothetical protein [Arcobacter sp. L]
Length = 360
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 164/331 (49%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + AS + + +P + DL+ A + + + I + + DG++K L K
Sbjct: 26 RAKQVYNWLYKKYAS-SYDDMKNLPNELKEDLK-ANYPIDIMQIVKKEQSRDGSIKYLFK 83
Query: 90 LEDNRLIETVGIPVEDEK----GPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L DN +E V + ++D+K G + + T C+SSQVGC + CSFC T KGGF RNL+
Sbjct: 84 LRDNHTVEAVLLLMKDKKIDEDGQIVRSEKYTVCISSQVGCKVGCSFCLTAKGGFVRNLT 143
Query: 142 SHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMI 196
E + Q++ I+ +I +++ N+V+MGMGEP+ N + +A ++ + I +R
Sbjct: 144 VGEYIAQIVNIKRDNQIAENKALNIVYMGMGEPLDNFDNFTKAVEIFSELDGLAISRRRQ 203
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------------ 226
T+ST G+ + IKKL L LAI V
Sbjct: 204 TVSTSGIASKIKKLGEKDLGMQLAISLHAVDDELRSELIPMNKAYNIASIIEAVKGFPVD 263
Query: 227 ---------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
ND ++ A +L LL+ G VNLI FNP G+ YQRP ++ +L
Sbjct: 264 TRKKVMFEYLVIKDKNDSIDAARKLVTLLN--GIQAKVNLIYFNPYPGTSYQRPVEEDML 321
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L + +IR+++GLD SAACGQL+
Sbjct: 322 RFKDFLNQKGVICTIRESKGLDISAACGQLK 352
>gi|242277580|ref|YP_002989709.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
salexigens DSM 2638]
gi|242120474|gb|ACS78170.1| radical SAM enzyme, Cfr family [Desulfovibrio salexigens DSM 2638]
Length = 351
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 149/284 (52%), Gaps = 63/284 (22%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T+ DGT+KLL++L+D L+ETV IP+E R T C+S+QVGC + C+FC TG GF
Sbjct: 78 TSKDGTIKLLLRLKDGALVETVLIPMEG-----RYTQCLSTQVGCAMACTFCNTGLMGFE 132
Query: 138 RNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
RN+S E++GQVLA + + + N+VFMGMGEP+LNL +++ R LN +
Sbjct: 133 RNMSMSEMLGQVLAGRKYLRENNLDPLKNLVFMGMGEPLLNLDNLIRTLRNLNNQDGLSF 192
Query: 192 GQRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA---- 220
R IT+S+VG +++L A ++ LA
Sbjct: 193 VPRRITVSSVGFVKQLEELGKTGLTLPAISLHAPTQELREKIMPKAAKTHIEDLLAAMDR 252
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHH---VNLIPFNPIEGSDYQR 264
+ GVND +EHA +L +LL GH VNLI +NP + Y+
Sbjct: 253 FPLKPREKVTYEYLLLGGVNDSIEHAKQLVKLL-----GHRRCKVNLIAYNPGDEPLYKA 307
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
P ++ VLAF L KIT +IR++ G D AACGQL+ + QK
Sbjct: 308 PTREKVLAFEKYLWDKKITATIRRSMGQDIKAACGQLKADQQKK 351
>gi|295094726|emb|CBK83817.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus sp. ART55/1]
Length = 358
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 153/302 (50%), Gaps = 55/302 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+S R + E G G + R ++ DGT K L +L D +IE+V + +
Sbjct: 59 LPKSLREKMDEYG-IYGVSVVTRLISEDDGTNKFLFRLHDGNVIESVLMKYKHGN----- 112
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+SSQVGC + C FCA+ GG RNL++ E++ Q+ +I++I RV+NVV MG GEP+
Sbjct: 113 SVCISSQVGCRMGCRFCASTIGGLVRNLTASEMLSQIYSIQKITGERVSNVVVMGTGEPL 172
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAI--------- 221
N +++ L + + I QR +T+S+ G+ IK+LA L T A+
Sbjct: 173 DNFDNLVRFIEMLTDENGLNISQRNVTVSSCGLVPEIKRLADMGLSITFALSLHAPNDED 232
Query: 222 RSA------------------------------------GVNDQVEHAVELAELLHEWGR 245
R A G ND E A ELA L+ GR
Sbjct: 233 RRALMPIANRYSIAEVLDACDYYFDRTGRRITFEYSLVKGQNDSPEKACELARLIR--GR 290
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
HVNLIP NPI+ DY+R A+ F LE ++IT ++R++ G D AACGQLR ++
Sbjct: 291 NCHVNLIPVNPIKERDYERADNSAIENFKNILERNQITATVRRSMGRDIDAACGQLRRKY 350
Query: 306 QK 307
++
Sbjct: 351 EE 352
>gi|86134466|ref|ZP_01053048.1| radical SAM superfamily protein [Polaribacter sp. MED152]
gi|85821329|gb|EAQ42476.1| radical SAM superfamily protein [Polaribacter sp. MED152]
Length = 345
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 157/330 (47%), Gaps = 68/330 (20%)
Query: 30 RGRQRAPW------HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
RG Q W H + ++ R ++ E + + + + +ADGT
Sbjct: 28 RGNQVYEWLWSKSLHTFEDMTNISKKTR--------EMLEEHFVINHIKVDSMQKSADGT 79
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
+K IKL D ++E+V IP P R TACVSSQVGC L C FCAT + RNL+
Sbjct: 80 IKNGIKLHDGLVVESVLIPT-----PKRTTACVSSQVGCSLDCKFCATARLKRMRNLNPD 134
Query: 144 EIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMIT 197
EI QV+ I++ H++TN+VFMGMGEP++N K+VL++ + +G + IT
Sbjct: 135 EIYDQVVVIDKQSRLYHNHKLTNIVFMGMGEPLMNYKNVLKSIEMITSPEGLGMSSKRIT 194
Query: 198 ISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH 247
+ST GVP IKK+A +++ LA+ D+V ++ +L E L W
Sbjct: 195 VSTSGVPKMIKKMADEEVKFNLAVSLHSAIDEVRTSIMPFNTTFPLKDLKESLEYWYEKT 254
Query: 248 ---------------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFA 274
VNLI +NPI+ +Q+ A+ +
Sbjct: 255 KRAITYEYVVWEGINDKKEDIAALVQFCKYVPCKVNLIEYNPIDDGQFQQASNAALNNYI 314
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNE 304
LE H IT ++R++RG D AACGQL N+
Sbjct: 315 SNLEMHDITVNVRRSRGKDIDAACGQLANK 344
>gi|205829853|sp|Q15R53.2|RLMN_PSEA6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 376
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 157/330 (47%), Gaps = 65/330 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W +AG S + + ++ R L+ A V I A+DGT+K
Sbjct: 29 PFRADQMMKWIYQAGVSDFDQMTN-LNKALREKLK-AQCEVKAPEIAYQQGASDGTIKFA 86
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++LE + +ETV IP ED R T CVSSQVGC L C+FC+T + GF+RNLS EI+G
Sbjct: 87 LRLEGGQEVETVWIPDED-----RATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIG 141
Query: 148 QVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + K +TNVV MGMGEP+LNLK+V+ A + D+ G +R +T+
Sbjct: 142 QVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTL 201
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + L Y +Q LA
Sbjct: 202 STSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNA 261
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A ELA++L + +NLIPFNP GS Y R +
Sbjct: 262 NQGKVTVEYVMLNGINDSTDQAHELAKVLAD--TPCKINLIPFNPYPGSPYSRSSNSRID 319
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
FA L S+ + +R+TRG D AACGQL
Sbjct: 320 RFAKVLSSYGLMVVVRKTRGDDIDAACGQL 349
>gi|410031405|ref|ZP_11281235.1| ribosomal RNA large subunit methyltransferase N [Marinilabilia sp.
AK2]
Length = 353
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 156/294 (53%), Gaps = 54/294 (18%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
++ +A +++ + + + DGT+K +KL D++++E+V IP E R+TACVSSQ
Sbjct: 58 EMLKANFSINHVKVDLMQHSVDGTIKNAVKLYDDKIVESVLIPTEK-----RITACVSSQ 112
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNL 175
VGC L C+FCAT + RNL+ EI QV+AI+E F +TN+VFMGMGEP+LN
Sbjct: 113 VGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAETYFNRPLTNIVFMGMGEPLLNY 172
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVND---- 228
+V+EA + +G R IT+STVG+P IKK+A +++ LAI + +N+
Sbjct: 173 NNVIEAIDKITAPEGLGMAPRRITLSTVGIPKMIKKMADDEVKFNLAISLHSAINETRSR 232
Query: 229 -----QVEHAVELAELLHEWGRG---------------------------------HHVN 250
+V +LAE L W + VN
Sbjct: 233 LMPINEVNPLEDLAEALKYWYQKTKRKVTYEYVIWDGVNDDEKHAKALAKFCKIIPSKVN 292
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+I +NPI+ ++++ ++AV + LE I +R++RG D AACGQL N+
Sbjct: 293 IIQYNPIDEGEFRQASQEAVDMYVRILEEQGIIAKVRKSRGQDIDAACGQLANK 346
>gi|196228869|ref|ZP_03127735.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
gi|196227150|gb|EDY21654.1| radical SAM enzyme, Cfr family [Chthoniobacter flavus Ellin428]
Length = 359
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 149/302 (49%), Gaps = 53/302 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE---KGP 109
+P R L G P+ RT+ + D T+K L +L+D LIE+V IP +
Sbjct: 53 LPAGLRQQLAAELSFSGLEPV-RTLGSKDTTLKYLFRLDDGALIESVLIPASPALYGEAS 111
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG 169
R T C+S+QVGC C FCA+G G+SRNL EIV QVL +EE+ ++ N+VFMGMG
Sbjct: 112 DRRTICISTQVGCAYGCKFCASGLDGWSRNLQPGEIVDQVLRVEELSGEKINNIVFMGMG 171
Query: 170 EPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAG-- 225
EPM N ++++A +N + +G R ITIST G+ IK LA LQ LAI G
Sbjct: 172 EPMANFTNLMKAITIINAPWGIGLGARHITISTSGLAPQIKLLADQPLQVRLAISLHGAT 231
Query: 226 -------------------------------------------VNDQVEHAVELAELLHE 242
VND+ E A L ++ +
Sbjct: 232 NEVREQIMPVNRKYPLEVLLEACAYYTQRKKQWLTFEYILIEEVNDRPEDAAALVKVARQ 291
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VN IP+N +EG D+ RP + AF LE+ +I +IR+ +G D +AACGQLR
Sbjct: 292 --VKAKVNCIPYNKVEGLDWTRPSEARQDAFMAVLEAGRIPATIRREKGHDIAAACGQLR 349
Query: 303 NE 304
+
Sbjct: 350 RQ 351
>gi|430760187|ref|YP_007216044.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009811|gb|AGA32563.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 377
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/278 (38%), Positives = 142/278 (51%), Gaps = 61/278 (21%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGTVK +++L D IETV IP ED++G T C+SSQVGC L C+FC+T + GF+RNL
Sbjct: 81 DGTVKWVLRLADGNAIETVYIP-EDDRG----TLCISSQVGCALDCTFCSTAQQGFNRNL 135
Query: 141 SSHEIVGQV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG-- 192
S+HEI+GQ+ + + E VTNVVFMGMGEP+ NL +V++A + D G
Sbjct: 136 SAHEIIGQLWLANQRVPVPEGRSRAVTNVVFMGMGEPLANLDAVVDAIDLMLDDNAYGLS 195
Query: 193 QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA----- 220
+R +T+ST G+ + +L + Y + L
Sbjct: 196 KRRVTVSTSGLVPALDRLGAATDVALAVSLHAPNDALRNRLVPINRKYPIHELLNACRRY 255
Query: 221 --------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
+ AG+NDQ HA EL LL + +NLIPFNP GS + RP
Sbjct: 256 TRDGARHHRVTFEYVLLAGINDQPRHARELMALLRDV--PCKINLIPFNPFPGSPFVRPS 313
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
AV F L+ T +R+TRG D AACGQL E
Sbjct: 314 SNAVRVFEKLLDDAGFVTIVRRTRGDDIDAACGQLVGE 351
>gi|254457165|ref|ZP_05070593.1| radical SAM enzyme, Cfr family [Sulfurimonas gotlandica GD1]
gi|373867453|ref|ZP_09603851.1| protein containing CHP00048/radical SAM domain [Sulfurimonas
gotlandica GD1]
gi|207085957|gb|EDZ63241.1| radical SAM enzyme, Cfr family [Sulfurimonas gotlandica GD1]
gi|372469554|gb|EHP29758.1| protein containing CHP00048/radical SAM domain [Sulfurimonas
gotlandica GD1]
Length = 359
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 158/312 (50%), Gaps = 61/312 (19%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK--- 107
+ VP++ R +L E + V L I + DGT+K L++++D + +E V + ++D +
Sbjct: 45 KNVPKALREELAEK-YVVNPLTIVNKEVSTDGTIKYLLQMQDGKTMEAVWLKMKDTQLDE 103
Query: 108 -----GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI--EEIFKH-R 159
+ T CVS+QVGC + CSFC T KGGF+R+L++ EIV QV+ + + KH R
Sbjct: 104 NAEVIQEAKYTICVSTQVGCKVGCSFCLTAKGGFTRDLTAGEIVAQVVTLKCDNDHKHNR 163
Query: 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQS 217
N+V+MGMGEP+ NL ++ +A +D + I + T+ST G+ N I +L L
Sbjct: 164 KINIVYMGMGEPLDNLDNLAKAIEIFKEDDGLCISGKRQTVSTSGLSNKIDQLGKMDLGV 223
Query: 218 TLAIR---------------------------------------------SAGVNDQVEH 232
+AI G ND +
Sbjct: 224 HIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFPIDTRKRVMFEYLVIKGKNDDLGS 283
Query: 233 AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292
A +L +LLH G VNLI FNP G+DY RP K+ ++ FA L H + +IR ++G+
Sbjct: 284 AKKLVKLLH--GIKAKVNLIYFNPYPGTDYDRPSKEDMVTFADYLIKHGLLCTIRDSKGI 341
Query: 293 DASAACGQLRNE 304
D SAACGQL+ +
Sbjct: 342 DISAACGQLKEK 353
>gi|298208115|ref|YP_003716294.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
HTCC2559]
gi|83848036|gb|EAP85906.1| hypothetical protein CA2559_07736 [Croceibacter atlanticus
HTCC2559]
Length = 346
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 163/324 (50%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W GA T + + R D+ EA + + + + + ++DGT+K +K
Sbjct: 29 RGNQVYEWLWNKGAH-TFEEMTNISKETR-DMLEANFVINHILVDQMQRSSDGTIKNAVK 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +E+V IP R TACVSSQVGC L C FCAT + RNL+ EI QV
Sbjct: 87 LHDGLTVESVLIPT-----ASRTTACVSSQVGCSLDCKFCATSRLKRMRNLNPDEIYDQV 141
Query: 150 LAIE---EIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
+AI+ ++ R ++N+VFMGMGEP++N +VL++ + + +G R IT+ST GV
Sbjct: 142 VAIDRESRLYHDRPLSNIVFMGMGEPLMNYNNVLKSIEKITSEDGLGMSPRRITVSTSGV 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW----GRG--- 246
P IKK+A +++ LA+ D+V + +L E L W G+
Sbjct: 202 PKIIKKMADEEVKFNLAVSLHSAIDEVRTKIMPFNEHFPLKDLRESLEYWYAKTGKQITY 261
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ ++Q+ A+ A+ ALE +
Sbjct: 262 EYVVWKDINDRTEDIDALVKFCKYVPSKVNLIEYNPIDDGEFQQAPDAAINAYVNALERN 321
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
IT ++R++RG D AACGQL N+
Sbjct: 322 NITVTVRRSRGKDIDAACGQLANK 345
>gi|359393966|ref|ZP_09187019.1| Ribosomal RNA large subunit methyltransferase N [Halomonas
boliviensis LC1]
gi|357971213|gb|EHJ93658.1| Ribosomal RNA large subunit methyltransferase N [Halomonas
boliviensis LC1]
Length = 399
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 141/280 (50%), Gaps = 62/280 (22%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K ++++ED+ +ETV IP E+ K R T CVSSQVGC L CSFC+TGK GF
Sbjct: 103 TSSDGTRKWVLEVEDSSYVETVLIPAENGK---RRTLCVSSQVGCSLDCSFCSTGKQGFQ 159
Query: 138 RNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV + R VTNVV MGMGEP+LN +V+ A + + D
Sbjct: 160 RNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNVVPAMKLMLDDNG 219
Query: 191 IG--QRMITISTVGVPNTIKKLASYKLQSTLAIR-------------------------- 222
G +R +T+ST GV I KL ++ +LAI
Sbjct: 220 YGLSKRRVTLSTSGVVPMIDKLGD-EMDVSLAISLHASTDELRNELVPINRKYNIRALLD 278
Query: 223 ---------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
VNDQ EHA +LA LL E +NLIPFNP S
Sbjct: 279 ACHRYLAKCPDNRQVTIEYTLIKDVNDQQEHAEQLAALLKEL--PCKINLIPFNPFPNSG 336
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y++P + V+ F L ++R TRG D AACGQL
Sbjct: 337 YEKPSRNQVMRFQQWLYDLGYNATVRTTRGEDIDAACGQL 376
>gi|160903334|ref|YP_001568915.1| ribosomal RNA large subunit methyltransferase N [Petrotoga mobilis
SJ95]
gi|205829799|sp|A9BIC0.1|RLMN_PETMO RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|160360978|gb|ABX32592.1| radical SAM enzyme, Cfr family [Petrotoga mobilis SJ95]
Length = 347
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 144/275 (52%), Gaps = 55/275 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ DGT K L++LED +E V I P R AC+S+QVGCPL+CSFC+TG+
Sbjct: 72 KEVSKIDGTTKYLLELEDKNTVEAVIIYY-----PSRTIACISTQVGCPLKCSFCSTGQS 126
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
G+ RNLS+ EI+GQ+LA+E+ + V NVV+MGMGEP+LN +V++ LN K ++G
Sbjct: 127 GYVRNLSTGEIIGQLLAMEKDKEMDVKNVVYMGMGEPLLNFNNVVQTIEILNHPKMKKLG 186
Query: 193 QRMITISTVGVPNTIKKLAS----YKLQSTL----------------------------- 219
R ITIST G+P I+++ ++L +L
Sbjct: 187 ARHITISTAGIPQKIEEVGDLNKEFRLSVSLHAPTNLQRDQIMPINHKYPVEQVIQSCRI 246
Query: 220 ------------AIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
I G ND E A++L EL + VNLIP N + +++P K
Sbjct: 247 YQKKTKKRVTFEYILIKGFNDSKEDALKLVELFGDLKV--MVNLIPVNE-NPAGFEKPSK 303
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ + AF L + I +R +G D SAACGQLR
Sbjct: 304 RFIQAFLDTLVKNGIDAVVRAEKGSDISAACGQLR 338
>gi|296271697|ref|YP_003654328.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
gi|296095872|gb|ADG91822.1| radical SAM enzyme, Cfr family [Arcobacter nitrofigilis DSM 7299]
Length = 355
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 165/332 (49%), Gaps = 64/332 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + A+ + + +P + DL+E + + L I + ++DG++K L K
Sbjct: 21 RAKQVYNWIYKKYAN-SYDEMKNIPNDLKEDLKE-NYAIDILKIIKKEKSSDGSIKYLFK 78
Query: 90 LEDNRLIETVGIPVED---------EKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
L D +ETV + + + EKG + T C+S+QVGC + C+FC T KGGF RNL
Sbjct: 79 LHDGHTVETVFLLMREKQIGDDGVVEKGE-KHTVCISTQVGCKVGCTFCLTAKGGFVRNL 137
Query: 141 SSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRM 195
+ EIV Q++ ++ I +++ N+VFMGMGEP+ N K+ + + + +++ + I +R
Sbjct: 138 TVGEIVAQIVNMKRDNNIDENKSLNIVFMGMGEPLDNYKNFVHSVKVFSEEEGLYINRRR 197
Query: 196 ITISTVGVPNTIKKLASYKLQSTLAIRSAGV----------------------------- 226
T+ST G+ + I+KL + L LAI V
Sbjct: 198 QTVSTSGISSKIEKLGNENLGIQLAISLHAVDDELRSELIPMNKAYNIKSIIDAVKKFPV 257
Query: 227 ----------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
ND + A +L LL G VNLI FNP G+ YQRP K +
Sbjct: 258 DARKKVMFEYLVIKDKNDDIASAKKLLSLLD--GIKAKVNLIYFNPYPGTTYQRPESKKM 315
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ F L S + +IR+++GLD SAACGQL+
Sbjct: 316 VEFQNYLISKGLLCTIRESKGLDISAACGQLK 347
>gi|297617050|ref|YP_003702209.1| Cfr family radical SAM protein [Syntrophothermus lipocalidus DSM
12680]
gi|297144887|gb|ADI01644.1| radical SAM enzyme, Cfr family [Syntrophothermus lipocalidus DSM
12680]
Length = 371
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 156/307 (50%), Gaps = 60/307 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+P+ R+ +++ LP+ R + DGTVK+L+ L+D + +E V IP + G R
Sbjct: 48 LPRDLRDRVKQVASIT--LPVVERERISRDGTVKVLLGLQDGQHVEMVMIP-QTRAGRHR 104
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH-----------RV 160
T C+SSQVGCP+ C FCATG+ GF RNL+ +EI GQVL ++ R+
Sbjct: 105 YTLCISSQVGCPIGCPFCATGRSGFVRNLAVNEITGQVLLGLLRLRNSNTFETQGSATRL 164
Query: 161 TNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQST 218
TNVVFMGMGEP LN +V++ R +N + IGQR IT+ST G I++LA LQ T
Sbjct: 165 TNVVFMGMGEPFLNYSAVMKCIRLMNDPDGLNIGQRHITVSTAGEVRGIRRLAQEGLQVT 224
Query: 219 LAIRSAGVNDQVEHAV----------ELAELLH--------------------------- 241
LA+ D+V + EL E L
Sbjct: 225 LAVSLHSARDEVRDWLVPLNRKYPLSELEEALRFYCGVTKRRVTLEYVLLEGVNTSRQDV 284
Query: 242 ----EWGRGH--HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
++ R +VNLIP+N IE ++++RP VL F L+ + + +R+ RG D
Sbjct: 285 ASLIDFARPLLCNVNLIPYNQIEKAEFRRPSPSTVLRFQQWLKEAGVNSVVREERGGDIE 344
Query: 296 AACGQLR 302
ACGQLR
Sbjct: 345 GACGQLR 351
>gi|261856771|ref|YP_003264054.1| Cfr family radical SAM protein [Halothiobacillus neapolitanus c2]
gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
Length = 392
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 152/311 (48%), Gaps = 61/311 (19%)
Query: 55 QSFRNDLQEAGWTVGRLPIFR-TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
+S R+ L++ R P R ++DGT K L++L+ +E V IP +D R T
Sbjct: 70 KSLRDKLRDLACI--RAPAIRLDQQSSDGTRKFLLELDGGGSVEMVYIPEDD-----RAT 122
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRV------TNVVFMG 167
C+SSQVGC L C+FC+TG+ GF+RNL++ EIVGQ+ E + V +NVVFMG
Sbjct: 123 LCISSQVGCSLACTFCSTGRQGFNRNLTTAEIVGQLWLAERMIDRAVNHNRAISNVVFMG 182
Query: 168 MGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS------------- 212
MGEP+LN +SV++A + D G +R +TIST G+ I +LA
Sbjct: 183 MGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAISLHAP 242
Query: 213 --------------YKLQSTLA------------------IRSAGVNDQVEHAVELAELL 240
Y L +A + GVND+ HA E+ LL
Sbjct: 243 NDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEMIRLL 302
Query: 241 HEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQ 300
VNLIPFNP S Y+R + + F L++ I T R+TRG D AACGQ
Sbjct: 303 APRKDAVKVNLIPFNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDAACGQ 362
Query: 301 LRNEFQKSPLR 311
L EF+ R
Sbjct: 363 LVGEFEDKARR 373
>gi|406662502|ref|ZP_11070597.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
gi|405553575|gb|EKB48780.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
Length = 353
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 156/294 (53%), Gaps = 54/294 (18%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
++ + +++ + + +ADGT+K +KL D++++E+V IP E R+TACVSSQ
Sbjct: 58 EMLKQNFSINHVKVDLMQHSADGTIKNAVKLFDHKIVESVLIPTEK-----RITACVSSQ 112
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNL 175
VGC L C+FCAT + RNL+ EI QV+AI+E F +TN+VFMGMGEP+LN
Sbjct: 113 VGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAETYFNRPLTNIVFMGMGEPLLNY 172
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVND---- 228
+V+EA + +G R IT+STVG+P IKK+A +++ LAI + +N+
Sbjct: 173 NNVIEAIDKITAPEGLGMAPRRITLSTVGIPKMIKKMADDEVKFNLAISLHSAINETRSR 232
Query: 229 -----QVEHAVELAELLHEWGRG---------------------------------HHVN 250
+V +LAE L W + VN
Sbjct: 233 LMPINEVNPLEDLAEALKYWYQKTKRKVTYEYVIWEGINDDEKHAKALAKFCKIIPSKVN 292
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+I +NPI+ ++++ ++AV + LE I +R++RG D AACGQL N+
Sbjct: 293 IIQYNPIDDGEFRQASQEAVDMYVRVLEDQGIIAKVRKSRGQDIDAACGQLANK 346
>gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
Length = 349
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 147/297 (49%), Gaps = 54/297 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ R L W V + + DG+VK L L D + E V +P ++ K
Sbjct: 40 LPKGLREALARE-WRVSEFQLVEAYPSKDGSVKYLFTLLDGKKTEAVYMPYKNRK----- 93
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+SS VGCP C+FCATG GF RNL++ EI+ Q+LAI + + + NVV MGMG
Sbjct: 94 TVCLSSMVGCPAGCTFCATGALGFGRNLTAAEILSQLLAIAHHQGLSPREIRNVVLMGMG 153
Query: 170 EPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227
EP+LNL +VL+A R + K + + R IT+STVG+P I +LA + LA+ +
Sbjct: 154 EPLLNLTNVLKAIRVMLHPKALAMSPRRITLSTVGIPRGILRLAEEDVGVRLALSLHAPD 213
Query: 228 DQVE-------HAVELAELL--------------------------HEW----------G 244
D+ H +AE++ H W G
Sbjct: 214 DETRRKIIPTAHRYPIAEIMAAVRRYYERTKRRVTFEYTLLKGLNDHLWQARLLAKLLKG 273
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
HVNLIPFNP E + + K +LAFA L ++TSIR +RG D AACGQL
Sbjct: 274 ISAHVNLIPFNPWENAPVEGTPKAGILAFAEELRRLGVSTSIRWSRGRDVGAACGQL 330
>gi|404448301|ref|ZP_11013294.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
gi|403765922|gb|EJZ26797.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
Length = 352
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 157/295 (53%), Gaps = 56/295 (18%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
++ +A +++ + + + DGT+K +KL DN+++E+V IP R+TACVSSQ
Sbjct: 57 EMLKANFSINHVKVDLMQHSNDGTIKNAVKLFDNKIVESVLIPT-----TKRITACVSSQ 111
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNL 175
VGC L C+FCAT + RNL+ EI QV+AI+E F+ +TN+VFMGMGEP+LN
Sbjct: 112 VGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIKEEAETYFQRPLTNIVFMGMGEPLLNY 171
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAI-----------R 222
+V++A + +G R IT+STVG+P IKK+A +++ LA+ R
Sbjct: 172 NNVIDAIDKITSPEGLGMAPRRITLSTVGIPKMIKKMADDEVRFNLAVSLHSAIDETRSR 231
Query: 223 SAGVNDQVEHAVELAELLHEWGRG---------------------------------HHV 249
+ND V +LAE L W + V
Sbjct: 232 LMPIND-VNPLEDLAEALKYWYQKTKRKVTYEYVIWDGINDDERHAKALAKFCKIIPSKV 290
Query: 250 NLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
N+I +NPI+ ++++ ++AV + LES+ I +R++RG D AACGQL N+
Sbjct: 291 NIIQYNPIDEGEFRQASQEAVDMYVRILESNGIIAKVRKSRGQDIDAACGQLANK 345
>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
gi|387814569|ref|YP_005430055.1| Fe-S protein [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|205829787|sp|A1TZP7.1|RLMN_MARAV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
gi|381339585|emb|CCG95632.1| putative Fe-S containing enzyme (yfgB) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 369
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 165/343 (48%), Gaps = 65/343 (18%)
Query: 15 PAAQVICFFFFTCPSRGR--QRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP 72
P A++ FF R R Q W + G + + +S R L+E G
Sbjct: 14 PKAKLEAFFETLGEKRFRAQQVLQWMHQRGVDDFDQMTN-MSKSLREQLKEVAEIRGPEV 72
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
++ T+ DGT K ++++++ +ETV IP + E+G T CVSSQ+GC L C+FC+TG
Sbjct: 73 VYDE-TSKDGTRKWVMRMDNGNSVETVLIP-DGERG----TLCVSSQIGCSLDCTFCSTG 126
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLN 186
K GF+RNL++ EI+GQV F +TNVV MGMGEP+LN ++V++A +
Sbjct: 127 KRGFNRNLTAAEIIGQVWVARRAFMPFDPNDRPITNVVMMGMGEPLLNFENVVDAMNLMM 186
Query: 187 KDVQIG--QRMITISTVGVPNTIKKLAS---------------------------YKLQS 217
+D+ G +R +T+ST GV + +L Y +
Sbjct: 187 EDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLHAPNDELRNQLVPLNKKYPIAE 246
Query: 218 TLAI-----------RSA--------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
LA R A GVNDQ EHA EL LL G +NLIPFNP
Sbjct: 247 LLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELVVLLK--GLPCKINLIPFNPFP 304
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
SD++RP A F L T+IR TRG D AACGQL
Sbjct: 305 ESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACGQL 347
>gi|344199654|ref|YP_004783980.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
ferrivorans SS3]
gi|343775098|gb|AEM47654.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
ferrivorans SS3]
Length = 363
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 137/276 (49%), Gaps = 54/276 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
AADGT K L+ L D IETV IP ED R T C+SSQVGC L CSFCATG G SR
Sbjct: 84 AADGTRKWLLGLPDGNAIETVFIPEED-----RGTLCISSQVGCSLACSFCATGAQGLSR 138
Query: 139 NLSSHEIVGQVLAIEEIFK-HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ--IGQRM 195
NL +HEI+ QV + + +TNVVFMGMGEP+LNL+ VL A L D +G R
Sbjct: 139 NLETHEIIAQVRVARRLLGLNAITNVVFMGMGEPLLNLRHVLPALDLLRDDYAYGLGARR 198
Query: 196 ITISTVGVPNTIKKLAS---------------------------YKLQSTLA-------- 220
IT+ST GV + +L + Y L LA
Sbjct: 199 ITVSTAGVVPGMDRLGTESPVNLAISLHASRDDIRDILVPVNRHYPLAELLAACRRYPLP 258
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND HA EL LL + VNLIPFNP GS+Y+R + +
Sbjct: 259 PRRRITFEYVMLDGLNDADTHARELLRLLRDI--PAMVNLIPFNPFPGSNYKRSPQLRID 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
AF + + T R+ RG D +AACGQL + +
Sbjct: 317 AFRDIILRGDVMTVTRRPRGDDIAAACGQLAGQVRD 352
>gi|410663508|ref|YP_006915879.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
gi|409025865|gb|AFU98149.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
Length = 385
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 151/306 (49%), Gaps = 66/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L++ R P + + + + DGT K LIK+E +ETV IP + E+G
Sbjct: 59 ISKDLRNKLKDVAEI--RFPEVMKQLDSVDGTRKFLIKVEGGSAVETVFIP-DGERG--- 112
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH-------RVTNVV 164
T CVSSQ+GC L CSFCATGK GF+R+L++ EI+ QV + F +VTNVV
Sbjct: 113 -TLCVSSQIGCSLDCSFCATGKQGFNRDLTAAEIIAQVWIAAKSFGQLGVNGPRKVTNVV 171
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASY--------- 213
MGMGEP+LN +V++A + D I +R +T+ST GV + +L Y
Sbjct: 172 LMGMGEPLLNFDNVVDAMSLMMHDNCYGISKRRVTLSTSGVVPALDRLGEYTDACLAISL 231
Query: 214 ----------------KLQSTLAIRSAG----------------------VNDQVEHAVE 235
K + + SA VND+ EHA E
Sbjct: 232 HAPNDALRNELVPINKKYPIAMLLDSAKRYIEQLPDTHRKITIEYTLIDHVNDRPEHAHE 291
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIPFNP SDY+R A+ F L T++R TRG D
Sbjct: 292 LAELLRDVPV--KINLIPFNPFSQSDYKRVSNNALRRFQTILIESGYVTTVRTTRGDDID 349
Query: 296 AACGQL 301
AACGQL
Sbjct: 350 AACGQL 355
>gi|407893166|ref|ZP_11152196.1| hypothetical protein Dmas2_03745 [Diplorickettsia massiliensis 20B]
Length = 315
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 142/277 (51%), Gaps = 61/277 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L++LED +ETV IP E +G T CVSSQVGC L CSFC+TGK GFSR
Sbjct: 29 SADGTRKWLLRLEDGNCVETVFIP-ERNRG----TLCVSSQVGCALNCSFCSTGKQGFSR 83
Query: 139 NLSSHEIVGQV-LAIE------EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+ QV +A+ E F RVTNVV MGMGEP+LN ++V+ A + D
Sbjct: 84 NLRIDEIIAQVWIAVHFVSKHIEFFSSRVTNVVMMGMGEPLLNFEAVVPAMNLMMDDFAY 143
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST G+ +KKL+ Y L+ L
Sbjct: 144 GFSKRRVTLSTSGIVPMLKKLSQVSDVALAISLHAPNDELRNELVPINKKYPLRELLEAC 203
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ G+NDQ+ HA +L ++L G VNLIPFNP + Y+R
Sbjct: 204 RHYFSQDSRRRITMEYVLLDGINDQLHHAQQLIQILQ--GISVKVNLIPFNPFPRTTYRR 261
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ + F L + T +R+TRG D AACGQL
Sbjct: 262 SPQHQIERFRDYLLKAGLNTIVRKTRGQDIDAACGQL 298
>gi|399908780|ref|ZP_10777332.1| hypothetical protein HKM-1_04906 [Halomonas sp. KM-1]
Length = 387
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 145/279 (51%), Gaps = 60/279 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K ++++ED +ETV IP ++ K R T CVSSQVGC L CSFC+TGK GF
Sbjct: 91 TSSDGTRKWVLEVEDGSYVETVLIPADNGK---RRTLCVSSQVGCSLDCSFCSTGKQGFQ 147
Query: 138 RNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV + R VTNVV MGMGEP++N +V+ A + + D
Sbjct: 148 RNLTAAEIIGQVWVAQRSVGPRKDTANRPVTNVVMMGMGEPLMNYDNVVPAMKLMLDDNG 207
Query: 191 IG--QRMITISTVGVPNTIKKL--------------ASYKLQSTLA-------IRS---- 223
G +R +T+ST GV + +L A+ +L+S L IR+
Sbjct: 208 YGLSKRRVTLSTSGVVPMLDRLGDELDVSLAISLHAATDELRSELVPLNRKYNIRTLLDA 267
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
VNDQ EHA +LAELL E +NLIPFNP S Y
Sbjct: 268 CQRYLAKCDDTRMITIEYTVIKDVNDQQEHAQQLAELLREL--PCKINLIPFNPFPHSGY 325
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + V+ F L T IR TRG D AACGQL
Sbjct: 326 EKPSRNQVMRFQQWLYELGYTAPIRTTRGGDIDAACGQL 364
>gi|419760428|ref|ZP_14286707.1| ribosomal RNA large subunit methyltransferase N [Thermosipho
africanus H17ap60334]
gi|407514531|gb|EKF49346.1| ribosomal RNA large subunit methyltransferase N [Thermosipho
africanus H17ap60334]
Length = 341
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 139/273 (50%), Gaps = 55/273 (20%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
++ D T K L +L D IE+V + E R+TAC+S+QVGCP++CSFCATG+ G+
Sbjct: 72 ISKIDRTTKFLWELADGNTIESVALFHEG-----RVTACISTQVGCPVKCSFCATGQSGY 126
Query: 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQR 194
RNL++ EIV Q+L IE K RV NVV+MGMGEP+LN ++ +++ + LN K IG R
Sbjct: 127 VRNLTAGEIVSQILGIEVHRKIRVGNVVYMGMGEPLLNYENTIKSVKMLNNKKMFGIGIR 186
Query: 195 MITISTVGVPNTIKKLASYKLQSTLA---------------------------------- 220
ITISTVGVP I LA L LA
Sbjct: 187 RITISTVGVPEKIIDLAESGLDVKLALSLHATTNFKRDQIIPLNKQYSIEELIFAVKKYQ 246
Query: 221 -----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
I ND E A +LAELL G VNLIP NP+ +Y RP + A
Sbjct: 247 EITNNRVTIEYILIKEFNDYPEDAEKLAELLK--GLSVFVNLIPVNPV-NPNYYRPSRWA 303
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ F L + I IR +G D AACGQLR
Sbjct: 304 MERFKEILTKYGIECEIRAEKGTDIDAACGQLR 336
>gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
Length = 314
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 142/275 (51%), Gaps = 50/275 (18%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPM-RLTACVSSQVGCPLRCSFCATGKGGFS 137
+ DGT K L +L D IETV IP D +G RLT CVS+QVGC L C FCA+G GF
Sbjct: 9 SIDGTKKFLWQLCDGHAIETVLIPATDSRGSSERLTLCVSTQVGCALGCHFCASGLLGFK 68
Query: 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRM 195
RNLS EIV QVL E I K RV+++VFMGMGEP+LN ++++ R ++ IG R
Sbjct: 69 RNLSCGEIVEQVLLSESIVKQRVSHIVFMGMGEPLLNYDQLIKSIRLISSSWGIGISPRK 128
Query: 196 ITISTVGVPNTIKKLASYKLQSTLAI---------RS----------------------- 223
ITIST G+ I+KLA L LA+ RS
Sbjct: 129 ITISTSGIAPRIRKLALETLPFRLAVSLHATTDELRSKIMPINSKYPLSELIKSCEEFCS 188
Query: 224 -------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
+G+ND+ E A LA + VNLIP+NPIE ++ P +K
Sbjct: 189 RRKQKITLEYILISGLNDRREDAERLARIATSL--RAKVNLIPYNPIERLAWKSPDQKEQ 246
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
L+F L++ + SIR+ RG D ACGQLR +
Sbjct: 247 LSFFRWLKNKAVQVSIRKERGRDIDGACGQLRLRY 281
>gi|448748166|ref|ZP_21729811.1| Ribosomal RNA large subunit methyltransferase RlmN [Halomonas
titanicae BH1]
gi|445564287|gb|ELY20411.1| Ribosomal RNA large subunit methyltransferase RlmN [Halomonas
titanicae BH1]
Length = 394
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 140/280 (50%), Gaps = 62/280 (22%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K ++++ED +ETV IP E+ K R T CVSSQVGC L CSFC+TGK GF
Sbjct: 98 TSSDGTRKWVLEVEDGSYVETVLIPAENGK---RRTLCVSSQVGCSLDCSFCSTGKQGFQ 154
Query: 138 RNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV + R VTNVV MGMGEP+LN +V+ A + + D
Sbjct: 155 RNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNVVPAMKLMLDDNG 214
Query: 191 IG--QRMITISTVGVPNTIKKLASYKLQSTLAIR-------------------------- 222
G +R +T+ST GV I KL ++ +LAI
Sbjct: 215 YGLSKRRVTLSTSGVVPMIDKLGD-EMDVSLAISLHASTDELRNELVPINRKYNIRALLD 273
Query: 223 ---------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
VNDQ EHA +LA LL E +NLIPFNP S
Sbjct: 274 ACHRYLSKCPDNRQVTIEYTLIKDVNDQQEHAEQLAALLKEL--PCKINLIPFNPFPNSG 331
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y++P + V+ F L ++R TRG D AACGQL
Sbjct: 332 YEKPSRNQVMRFQQWLYDLGYNATVRTTRGEDIDAACGQL 371
>gi|350561447|ref|ZP_08930285.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780479|gb|EGZ34797.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 377
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 143/275 (52%), Gaps = 61/275 (22%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGTVK +++L D IETV IP ED++G T C+SSQVGC L C+FC+T + GF+RNL
Sbjct: 81 DGTVKWVLRLADGNAIETVYIP-EDDRG----TLCISSQVGCALDCTFCSTAQQGFNRNL 135
Query: 141 SSHEIVGQV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG-- 192
S+ EI+GQ+ L I E VTNVVFMGMGEP+ N+++V++A + D G
Sbjct: 136 SAQEIIGQLWLANRRLPIPEGRSRAVTNVVFMGMGEPLANVEAVVDAVDLMLDDNAYGLS 195
Query: 193 QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA----- 220
+R +T+ST G+ + +L + Y ++ L
Sbjct: 196 KRRVTVSTSGLVPALDRLGASTDVALAVSLHAPNDALRDRLVPINRKYPIRELLDACRRY 255
Query: 221 --------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
+ AG+NDQ +HA EL LL + +NLIPFNP GS + RP
Sbjct: 256 TRDGARHHRVTFEYVLLAGINDQPQHARELITLLRDV--PCKINLIPFNPFPGSPFVRPS 313
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
AV F L+ T +R+TRG D AACGQL
Sbjct: 314 ANAVQVFEKLLDDAGFVTIVRRTRGDDIDAACGQL 348
>gi|399544718|ref|YP_006558026.1| ribosomal RNA large subunit methyltransferase N [Marinobacter sp.
BSs20148]
gi|399160050|gb|AFP30613.1| Ribosomal RNA large subunit methyltransferase N [Marinobacter sp.
BSs20148]
Length = 370
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 139/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A DGT K ++++++ IETV IP + E+G T CVSSQ+GC L CSFC+TGK GF+R
Sbjct: 78 AKDGTRKWVMRMDNGNNIETVLIP-DGERG----TLCVSSQIGCSLDCSFCSTGKRGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL+S EI+GQV A + F +TNVV MGMGEP+LN +V++A + +D+
Sbjct: 133 NLTSAEIIGQVWAARKTFMPYAPGPDRPITNVVMMGMGEPLLNFDNVVDAMNLMMEDLAY 192
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAIR 222
G +R +T+ST GV I KL Y + LA
Sbjct: 193 GISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLHAANDELRNQLVPINKKYPIAELLAAT 252
Query: 223 S-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
AGVND V+ A ELAE+L G +NLIPFNP S Y+
Sbjct: 253 RRYLSRLPDKRKATIEYTLMAGVNDHVDQARELAEVLR--GLPCKINLIPFNPFPDSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A F L ++R RG D AACGQL
Sbjct: 311 RPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACGQL 348
>gi|389843518|ref|YP_006345598.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Mesotoga prima MesG1.Ag.4.2]
gi|387858264|gb|AFK06355.1| 23S rRNA m2A2503 methyltransferase [Mesotoga prima MesG1.Ag.4.2]
Length = 339
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 150/302 (49%), Gaps = 62/302 (20%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTV---TAADGTVKLLIKLEDNRLIETVGIPVEDEKGP 109
+P + RN L ++ R + V + DGT K L+KLED+ IETV + K P
Sbjct: 47 LPMNLRNKL----GSLFRFTTMKEVERQISIDGTEKFLLKLEDDNHIETVVL-----KHP 97
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG 169
+T C+SSQVGC L CSFCATG GF+R+LS+ EIV QV+ +E V N+VFMGMG
Sbjct: 98 RHVTFCISSQVGCALNCSFCATGASGFTRDLSASEIVSQVILMENSIGRPVDNIVFMGMG 157
Query: 170 EPMLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTIKKLASYKLQSTLAI------ 221
EP LN +V +A + L+ V +G R TIST G+P IK+LA + L++
Sbjct: 158 EPFLNEANVYKAIKILHDPVGRNLGIRHFTISTAGIPEGIKRLADSGMDVRLSVSLHSAS 217
Query: 222 ---RSA------------------------------------GVNDQVEHAVELAELLHE 242
RS+ GVND E +L E L
Sbjct: 218 EETRSSLMPINKKYPLDSLRKVLDYYQQKTGNRITFEYALIKGVNDSKEDLTKLGEFL-- 275
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G VN+IP NP++ + RP + + F+ +L+ ++R +G D AACGQLR
Sbjct: 276 TGIKSFVNIIPVNPVKPV-FDRPSDREIAVFSESLKKAGFECAVRHEKGTDIEAACGQLR 334
Query: 303 NE 304
+
Sbjct: 335 QK 336
>gi|338997184|ref|ZP_08635885.1| hypothetical protein GME_04267 [Halomonas sp. TD01]
gi|338765781|gb|EGP20712.1| hypothetical protein GME_04267 [Halomonas sp. TD01]
Length = 394
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/281 (38%), Positives = 141/281 (50%), Gaps = 64/281 (22%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K ++++ED +ETV IP E+ K R T CVSSQVGC L CSFC+TGK GF
Sbjct: 98 TSSDGTRKWVLEVEDGSYVETVLIPAENGK---RRTLCVSSQVGCSLDCSFCSTGKQGFQ 154
Query: 138 RNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV + R VTNVV MGMGEP+LN +V+ A + + D
Sbjct: 155 RNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNVVPAMKLMLDDNG 214
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +T+ST GV I KL Y +++ L
Sbjct: 215 YGLSKRRVTLSTSGVVPMIDKLGDEIDVSLAISLHASTDELRNELVPINRKYNIRALLDA 274
Query: 221 --------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
IR VNDQ EHA +LA LL E +NLIPFNP S
Sbjct: 275 CHRYLSKCPDNRQVTIEYTLIRD--VNDQQEHAEQLAALLKEL--PCKINLIPFNPFPNS 330
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y++P + V+ F L ++R TRG D AACGQL
Sbjct: 331 GYEKPSRNQVMRFQQWLYDLGYNATVRVTRGEDIDAACGQL 371
>gi|385799661|ref|YP_005836065.1| 23S rRNA m(2)A-2503 methyltransferase [Halanaerobium praevalens DSM
2228]
gi|309389025|gb|ADO76905.1| 23S rRNA m(2)A-2503 methyltransferase [Halanaerobium praevalens DSM
2228]
Length = 347
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 160/326 (49%), Gaps = 60/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + G SKT + +P+ R+ L R+V A DGTVK L +
Sbjct: 25 RGEQVFNWLYKNGISKTEEM-KNIPKKMRSYLDNNYNLNNLKESKRSV-AVDGTVKYLWQ 82
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D IE V +P E G R +AC+S+QVGC L CSFCATG G RNL++ EIV QV
Sbjct: 83 LNDGENIEGVYLPFP-ESG--RHSACISTQVGCGLGCSFCATGIDGLKRNLTTGEIVEQV 139
Query: 150 LAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTV 201
L I++ + R++N+VFMGMGEP+ N ++++A LN + + IG R +TIST
Sbjct: 140 LEIQKDISGSNFAEPRLSNLVFMGMGEPLANFDNLMQAVEILNSNQGLNIGMRKMTISTA 199
Query: 202 GVPNTIKKLASYKLQSTLAIR--------------------------------------- 222
G+ IKKLA Q LAI
Sbjct: 200 GLVPEIKKLAKVNDQIGLAISLHAPNDRLRNKIMPINKKYNINQLLKTVIDYIEKTGRRV 259
Query: 223 ------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
VND E +V+L+ELL G HVNLIP NP+ +RP +K + +F
Sbjct: 260 TFEYVLMDSVNDSPELSVQLSELLR--GINCHVNLIPANPVPELGIERPVQKVIDSFYDT 317
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L ++ I S+R+ G AACGQL+
Sbjct: 318 LVNNGIQVSLRKEMGSQIEAACGQLK 343
>gi|253828191|ref|ZP_04871076.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
gi|253511597|gb|EES90256.1| Fe-S cluster redox enzyme [Helicobacter canadensis MIT 98-5491]
Length = 346
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 165/323 (51%), Gaps = 58/323 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + + +P++ R L+E + + I + ++DG+VK L K
Sbjct: 25 RAKQIYHW-LYVHYENDFEKMENLPKNLREFLKE-NFISNAVEIAKKEQSSDGSVKYLFK 82
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
DN E V + ++++K T C+SSQVGC + CSFC T KGGF RNL++ E+V QV
Sbjct: 83 TADNLTYEAVFLKMKEDK----FTLCLSSQVGCKVGCSFCLTAKGGFVRNLNAGEMVYQV 138
Query: 150 LAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVP 204
AI + I ++ N+V+MGMGEP+ NL++V + + L++ + I +R TIST G+
Sbjct: 139 FAIKKDQNIPSNKAVNIVYMGMGEPLDNLENVTKCIQILSELDGLSISRRRQTISTSGIA 198
Query: 205 NTIKKLASYKLQSTLAI---------RSA------------------------------- 224
IKKL + L LAI R+
Sbjct: 199 PKIKKLGALDLGVQLAISLHAVDDELRTKLMPINKAYNIQNIIDEVVAFPIDSRKRVMFE 258
Query: 225 -----GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
G+ND +E A +L LL++ VNLI FNP EGS Y+RP K+ V AF L
Sbjct: 259 YLMIDGINDSLECAKKLVALLNKI--KAKVNLIYFNPHEGSLYKRPSKEKVEAFREYLLK 316
Query: 280 HKITTSIRQTRGLDASAACGQLR 302
+ +IR+++GLD SAACGQLR
Sbjct: 317 KGLLCTIRESKGLDISAACGQLR 339
>gi|429762820|ref|ZP_19295193.1| 23S rRNA methyltransferase [Anaerostipes hadrus DSM 3319]
gi|291560509|emb|CBL39309.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
SSC/2]
gi|429180681|gb|EKY21890.1| 23S rRNA methyltransferase [Anaerostipes hadrus DSM 3319]
Length = 343
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 150/305 (49%), Gaps = 54/305 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VP+ + +++ G P+ ++ DGT K L +L D +IE+V + +
Sbjct: 46 VPKKLKEKIEQTQEIYGVKPVDCFISKIDGTRKYLFELYDGNIIESVLMKYKHGN----- 100
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+SSQ GC + C FCA+ GG RNL+ E++ Q+ I+ + RV+NVV MG GEPM
Sbjct: 101 SVCISSQAGCRMGCKFCASTLGGLDRNLTPSEMLSQIYYIQRDTEERVSNVVMMGTGEPM 160
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
N +VL + + + I QR ITIST G+ IK+LA LQ TLAI
Sbjct: 161 DNYDNVLRFLELITSEDGLNISQRNITISTCGIVPKIKELAQKHLQITLAISLHSPNDEM 220
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
AGVNDQ HA ELA L G
Sbjct: 221 RRGLMPIAMKYSIDELLDACHYYFKETNRRMTFEYSLVAGVNDQPVHAEELAGRLK--GF 278
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
HVNLIP NPI+ D+++ K+V+ F LE +++ +IR+ G D +AACGQLR +
Sbjct: 279 PCHVNLIPVNPIKERDFKQSMPKSVMEFKKILEKNRVNVTIRREMGADINAACGQLRRKK 338
Query: 306 QKSPL 310
+S L
Sbjct: 339 LQSRL 343
>gi|340753859|ref|ZP_08690632.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
gi|229423409|gb|EEO38456.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
Length = 358
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 160/306 (52%), Gaps = 62/306 (20%)
Query: 58 RNDLQEAGWTVGRLPIFR----TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRL 112
R L+E + +P F V+ D T K L +LED IETV + D K +R
Sbjct: 56 REILKENAY----IPFFNLLKHQVSKLDKTEKFLFELEDKGTIETVLLRHRDSKNKEIRN 111
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMG 169
T CVSSQVGCP++CSFCATG+GG+ RNLS EI+ QV +E + + + N+VFMGMG
Sbjct: 112 TLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRLRKKDESLNNLVFMGMG 171
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGV 226
EP+LN+ ++ A ++ + + I +R ITIST G+ + I+K+ K+ LA+ + +
Sbjct: 172 EPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEKIPIELAVSLHSAI 231
Query: 227 NDQ--------------------VEH------------------------AVELAELLHE 242
ND+ VE+ A LA+ +H+
Sbjct: 232 NDKRDQIIPINKNFPLEDLSAVLVEYQKQTKRRITFEYILIDNFNISEADANALADFIHQ 291
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQL 301
+ H VNLIP+N +EG +++RP K + F L++ K+ ++RQ +G D ACGQL
Sbjct: 292 F--DHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
Query: 302 RNEFQK 307
R +K
Sbjct: 350 RQRNKK 355
>gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
gi|212672379|gb|EEB32862.1| 23S rRNA m2A2503 methyltransferase [Desulfovibrio piger ATCC 29098]
Length = 357
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 148/286 (51%), Gaps = 55/286 (19%)
Query: 70 RLPIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSF 128
R P TV ++D T K L++L+D +ETV IP + +G R T C+SSQVGC + C+F
Sbjct: 63 RWPEIVTVEQSSDDTTKFLLRLQDGAEVETVLIPSDSREGVRRWTQCLSSQVGCAMACTF 122
Query: 129 CATGKGGFSRNLSSHEIVGQVLAIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAH 182
C+TG GF RN++ EI+GQ+L E + N+VFMGMGEP+LNLK+V+ A
Sbjct: 123 CSTGTMGFERNMTMGEILGQILVAREHLGDTRPDWPVLRNLVFMGMGEPLLNLKNVMRAL 182
Query: 183 RCLNKD--VQIGQRMITISTVGVPNTIKKL---------------------------ASY 213
LN D + R IT+ST G+ +++L A +
Sbjct: 183 ESLNNDKGLNFSPRRITVSTCGIEKGLRELGESGLAYLAVSLHAPTQELRARIMPKAARW 242
Query: 214 KLQSTL-AIRS----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
L+ L A++S GVND +E A +LA ++ + +NLI +NP
Sbjct: 243 PLEDLLQALKSYPLKTRERITFEYLLLGGVNDGLEQARQLARVVSD--VKGKLNLIVYNP 300
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
EG Y+ P + VLAF L IT IR+++G D AACGQL+
Sbjct: 301 SEGDPYKAPSPERVLAFEQYLWDRNITAIIRKSKGQDIKAACGQLK 346
>gi|374849841|dbj|BAL52845.1| hypothetical conserved protein [uncultured gamma proteobacterium]
Length = 366
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 138/270 (51%), Gaps = 56/270 (20%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGTVK L+ L D IETV IP E+ +G T CVSSQVGC L C+FCAT + GFSRNL
Sbjct: 81 DGTVKWLMALADGNCIETVFIP-EERRG----TLCVSSQVGCALGCAFCATARQGFSRNL 135
Query: 141 SSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
S+ EI+GQV R+TNVV MGMGEP+LN +V++A + D+ G +R +T+
Sbjct: 136 SAAEIIGQVWYAFRQLDCRITNVVLMGMGEPLLNFDAVVDAAELMMDDLAYGLAKRRVTV 195
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST G+ I++LA Y LQ LA
Sbjct: 196 STAGLAPAIERLAEISDVSLAVSLHATTDELRDLLVPINRKYPLQRLLAACRRFAGSERQ 255
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ GVND A LA+LL + +NLIPFNP G+ ++ + +L
Sbjct: 256 KGRKITFEYVMLQGVNDADADAKRLAKLLSQV--PAKINLIPFNPFPGAPFRCSPPETIL 313
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
F L T++R+TRG D +AACGQL
Sbjct: 314 RFQSILADSGFLTTVRRTRGEDIAAACGQL 343
>gi|338733713|ref|YP_004672186.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
gi|336483096|emb|CCB89695.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
Length = 362
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 156/302 (51%), Gaps = 63/302 (20%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+P+S R L A +++ L + +AD T K L KL D +L+E+V I D R
Sbjct: 56 LPKSLREKLA-ASFSLPSLTLMTIEDSADEETTKFLWKLRDGKLVESVLISSGD-----R 109
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGM 168
T CVSSQVGCP RC+FCA+GK G RNL++ EI QVL I+ K + V+++VFMGM
Sbjct: 110 RTVCVSSQVGCPARCAFCASGKEGLIRNLTAGEIHEQVLQIQAQLKKKGEHVSHIVFMGM 169
Query: 169 GEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---- 222
GEP+ N V++A R L + + R IT+STVGV I+KL ++ LA+
Sbjct: 170 GEPLDNYDQVVKALRLLTHPLALNLSPRRITVSTVGVVEGIEKLMDEEISVNLALSLHAP 229
Query: 223 -----------------------------------------SAGVNDQVEHAVELAELLH 241
G+ND + A EL ELL
Sbjct: 230 NQNLRKKIVPYSRKYLLEDILKAVDLYSKKTKRDLTYEYVLLKGINDSRKEAQELGELL- 288
Query: 242 EWGRGHH--VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
+G H VNLIP+NP++G + +RP K+++ AF L+ I ++ R T+G D +AACG
Sbjct: 289 ---KGQHCCVNLIPYNPVDGLNLKRPEKESIEAFREILDRAGIRSTWRYTKGKDIAAACG 345
Query: 300 QL 301
QL
Sbjct: 346 QL 347
>gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
Length = 370
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 139/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A DGT K ++++++ IETV IP + E+G T CVSSQ+GC L CSFC+TGK GF+R
Sbjct: 78 AKDGTRKWVMRMDNGNNIETVLIP-DGERG----TLCVSSQIGCSLDCSFCSTGKRGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL+S EI+GQV A + F +TNVV MGMGEP+LN +V++A + +D+
Sbjct: 133 NLTSAEIIGQVWAARKTFMPYAPGPDRPITNVVMMGMGEPLLNFDNVVDAMNLMMEDLAY 192
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAIR 222
G +R +T+ST GV I KL Y + LA
Sbjct: 193 GISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLHAANDELRNQLVPINKKYPIAELLAAT 252
Query: 223 S-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
AGVND V+ A ELAE+L G +NLIPFNP S Y+
Sbjct: 253 RRYLSRLPDKRKATIEYTLMAGVNDHVDQARELAEVLR--GLPCKINLIPFNPFPESGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A F L ++R RG D AACGQL
Sbjct: 311 RPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACGQL 348
>gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
Length = 365
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 141/281 (50%), Gaps = 55/281 (19%)
Query: 70 RLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSF 128
RLP + + TAADGT K L +L+D +E+V + + TAC+SSQVGCPLRC F
Sbjct: 87 RLPKLAKRQTAADGTRKYLWRLDDGEYVESVLMDHGNH-----YTACISSQVGCPLRCEF 141
Query: 129 CATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--N 186
CATG+ GF RNLS+ EIV A+E H + NVVFMGMGEP+LN ++V++A R
Sbjct: 142 CATGQQGFKRNLSAGEIVSHFAAMESDVGHDINNVVFMGMGEPLLNYENVVKAVRMFLEP 201
Query: 187 KDVQIGQRMITISTVGVPNTIKKLASYKLQSTL-------------------------AI 221
K + R +TIST G+P I++LA L L A+
Sbjct: 202 KMRGLSVRHVTISTSGIPEGIRRLADEGLDIYLCLSLHAPNNELRSRIMPVNERFPLGAV 261
Query: 222 RSA--------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
SA VND + A ELA L +VNLIP+NP+ G+
Sbjct: 262 FSALEYWQKKTGVRLTIEYVMLKNVNDTPDCAYELATLFSNLQV--YVNLIPYNPVAGTQ 319
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ RP + F L+ + +R+ G D AACGQLR
Sbjct: 320 FARPSASRIAPFMKILKGLNVECEVRKEHGADIDAACGQLR 360
>gi|441500899|ref|ZP_20983045.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
gi|441435297|gb|ELR68695.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
Length = 348
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 166/324 (51%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + A K + + R L++ +T+ + + + + DGT+K +K
Sbjct: 31 RAKQVYEWLWKKSA-KDFDQMTNISLDTREKLKQE-FTINHIAVDQMQRSNDGTIKNAVK 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP + R+TAC+SSQVGC L C+FCAT + RNL+ EI QV
Sbjct: 89 LFDGMIVESVLIPTD-----KRITACISSQVGCSLDCNFCATARLKRMRNLNPDEIYDQV 143
Query: 150 LAI----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
+AI E+ F +TN+VFMGMGEP+LN +V+EA + K +G + IT+STVG+
Sbjct: 144 VAIKEQSEQFFSRPLTNIVFMGMGEPLLNYGNVIEAIEKITKPEGLGMSPKRITLSTVGI 203
Query: 204 PNTIKKLASYKLQSTLAIR-SAGVNDQVEHAV---------ELAELLHEWG--------- 244
P IKKLA +++ LA+ +G+N+ + +LA+ L W
Sbjct: 204 PKMIKKLADDEVKFNLAVSLHSGINETRSKVMPINEKNPLEDLADALKYWYHKTKSKVTY 263
Query: 245 -----RG-------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
RG VNLI +NPI+ ++Q+ + A+ + LE+
Sbjct: 264 EYVVWRGVNDKERDADALVKFCKIIPSKVNLIEYNPIDEGEFQQASEDALNMYIQKLEAA 323
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
I +R++RG D AACGQL N+
Sbjct: 324 DIVVKVRRSRGKDIDAACGQLANK 347
>gi|338731523|ref|YP_004660915.1| 23S rRNA m(2)A-2503 methyltransferase [Thermotoga thermarum DSM
5069]
gi|335365874|gb|AEH51819.1| 23S rRNA m(2)A-2503 methyltransferase [Thermotoga thermarum DSM
5069]
Length = 343
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 160/337 (47%), Gaps = 71/337 (21%)
Query: 14 YPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI 73
Y A QV+ + + Q+ + + ++ R +PQ F DL + +
Sbjct: 23 YRADQVLDWVY--------QKLVFSFDQMTNLSKEHRRLLPQHFSIDLPKV--------V 66
Query: 74 FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGK 133
+ V+ D T K L +L+D IE+V + E TAC+S+QVGCP+RCSFCATG+
Sbjct: 67 EKKVSKFDKTTKYLFELKDGNTIESVLLFHEGYA-----TACISTQVGCPIRCSFCATGQ 121
Query: 134 GGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
GF RNL EIV Q+LAIE + ++ NVV+MGMGEP+LN +V+++ R LN K I
Sbjct: 122 SGFVRNLEVDEIVSQILAIEADSRQKIRNVVYMGMGEPLLNYDNVVKSVRILNHKKMKNI 181
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI------------------------------ 221
G R ITISTVG+P I KL L LAI
Sbjct: 182 GIRRITISTVGIPEKIIKLGQEGLDINLAISLHASSNEKRMQIIPLASKYAIEEILDAAK 241
Query: 222 -------RSAGV--------NDQVEHAVELAELLHEWGRGHHVNLIPFNP-IEGSDYQRP 265
R + ND E A LA++L E VNLIP NP + G +RP
Sbjct: 242 QFQQNTDRRVTIEYILIKEFNDYDEDARRLAKILKEMKMKVFVNLIPVNPALPG--LERP 299
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ F L I +R+ +G+D AACGQLR
Sbjct: 300 SIWKINRFKEILVESGIEAEVRREKGVDIEAACGQLR 336
>gi|78778287|ref|YP_394602.1| ribosomal RNA large subunit methyltransferase N [Sulfurimonas
denitrificans DSM 1251]
gi|123727504|sp|Q30NR4.1|RLMN_SULDN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78498827|gb|ABB45367.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
1251]
Length = 356
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 169/335 (50%), Gaps = 62/335 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + +++ + +PQ +++L ++ + V L I + + DGT+K L +
Sbjct: 22 RAKQIYGW-LYHNYAQSFDDMKNIPQQLKDELAKS-YVVNLLKIVKKELSNDGTIKYLFE 79
Query: 90 LEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L+D + IETV + ++DE+ + T CVS+QVGC + C+FC T KGGF+R+L+
Sbjct: 80 LQDGKTIETVWLKMKDEQIDEEGCVTQEAKYTICVSTQVGCKVGCAFCLTAKGGFTRDLT 139
Query: 142 SHEIVGQVLAIEEIFKH---RVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMI 196
+ EIV QV+A+++ H R+ N+V+MGMGEP+ NL ++ A ++ + I +
Sbjct: 140 AGEIVAQVVALKKDNDHKHNRMINIVYMGMGEPLDNLDNLSRAIEIFKEEDGLCISGKRQ 199
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------------ 226
T+ST G+ N I +L L +AI V
Sbjct: 200 TVSTSGLSNKIDRLGEMDLGVHIAISLHAVDDELRTELIPMNKAHNISSIIEAVKRFPID 259
Query: 227 ---------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
ND + A +L +LL G VNLI FNP + Y+RP K ++
Sbjct: 260 TRKRVMFEYLVIKNKNDDLGSAKKLVKLLS--GIKAKVNLIYFNPYPDTPYERPQKSDMI 317
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
AF L +H + +IR ++G+D SAACGQL+ + Q
Sbjct: 318 AFQEYLINHGLLCTIRDSKGIDISAACGQLKEKTQ 352
>gi|372211039|ref|ZP_09498841.1| ribosomal RNA large subunit methyltransferase N [Flavobacteriaceae
bacterium S85]
Length = 344
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 159/324 (49%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W A K + + R L+E + + + + ++DGTVK +K
Sbjct: 27 RGNQVYEWLWSKSAHKFEDMTN-ISKKTREILEE-NFVINHIEVDNMQRSSDGTVKNAVK 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP E R TACVSSQVGC L C FCAT + RNL++ EI QV
Sbjct: 85 LHDGLIVESVLIPTES-----RTTACVSSQVGCSLDCEFCATARLKRMRNLNADEIFDQV 139
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
AI + + H+++N+V+MGMGEP++N +V+++ + + +G + IT+ST G+
Sbjct: 140 SAINQESLLYYNHKLSNIVYMGMGEPLMNYNNVIKSIEKITSEEGLGMSPKRITVSTSGL 199
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGHH----- 248
P IKKLA +++ LA+ ++ + + +L E L W +
Sbjct: 200 PKMIKKLADDEVKFNLAVSLHSAIEETRNKIMPFSKNFPLTDLRESLEYWYNKTNSRVTY 259
Query: 249 ----------------------------VNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ +YQ+ KA A+ LE +
Sbjct: 260 EYVIWKDINDKQEDINALVKFCSYIPCKVNLIEYNPIDDGEYQQASSKATDAYMHTLEKN 319
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
I ++R++RG D AACGQL N+
Sbjct: 320 GIVVNVRRSRGKDIDAACGQLANK 343
>gi|359787063|ref|ZP_09290134.1| hypothetical protein MOY_13915 [Halomonas sp. GFAJ-1]
gi|359295713|gb|EHK59976.1| hypothetical protein MOY_13915 [Halomonas sp. GFAJ-1]
Length = 394
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 139/280 (49%), Gaps = 62/280 (22%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K ++++ED +ETV IP E+ K R T CVSSQVGC L CSFC+TGK GF
Sbjct: 98 TSSDGTRKWVLEVEDGSYVETVLIPAENGK---RRTLCVSSQVGCSLDCSFCSTGKQGFQ 154
Query: 138 RNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV + R VTNVV MGMGEP+LN +V+ A + + D
Sbjct: 155 RNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNVVPAMKLMLDDNG 214
Query: 191 IG--QRMITISTVGVPNTIKKLASYKLQSTLAIRSAG----------------------- 225
G +R +T+ST GV I KL ++ +LAI
Sbjct: 215 YGLSKRRVTLSTSGVVPMIDKLGD-EMDVSLAISLHASTDELRNELVPINRKYNIRALLD 273
Query: 226 ------------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+NDQ EHA +LA LL E +NLIPFNP S
Sbjct: 274 ACHRYLSKCPDNRQVTIEYTLIRDINDQQEHAEQLAALLKEL--PCKINLIPFNPFPNSG 331
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y+ P + V+ F L ++R TRG D AACGQL
Sbjct: 332 YETPSRNQVMRFQQWLYDQGYNATVRVTRGEDIDAACGQL 371
>gi|410627452|ref|ZP_11338191.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
gi|410152944|dbj|GAC24960.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
Length = 380
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 156/330 (47%), Gaps = 65/330 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W +AG S + + ++ R L+ A V I A+DGT+K
Sbjct: 33 PFRADQMMKWIYQAGVSDFDQMTN-LNKALREKLK-AQCEVKAPEIAYQQGASDGTIKFA 90
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++LE + +ETV IP D R T CVSSQVGC L C+FC+T + GF+RNLS EI+G
Sbjct: 91 LRLEGGQEVETVWIPDAD-----RATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIG 145
Query: 148 QVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + K +TNVV MGMGEP+LNLK+V+ A + D+ G +R +T+
Sbjct: 146 QVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTL 205
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + L Y +Q LA
Sbjct: 206 STSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNA 265
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A ELA++L + +NLIPFNP GS Y R +
Sbjct: 266 NQGKVTVEYVMLNGINDSTDQAHELAKVLAD--TPCKINLIPFNPYPGSPYSRSSNSRID 323
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
FA L S+ + +R+TRG D AACGQL
Sbjct: 324 RFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|358450412|ref|ZP_09160875.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
gi|385331231|ref|YP_005885182.1| hypothetical protein HP15_1490 [Marinobacter adhaerens HP15]
gi|311694381|gb|ADP97254.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
gi|357225343|gb|EHJ03845.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
Length = 370
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 168/344 (48%), Gaps = 66/344 (19%)
Query: 15 PAAQVICFFFFTCPSRGR--QRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP 72
P A++ FF R R Q W + GA + + ++ R L++ G
Sbjct: 14 PKAKLEAFFESLGEKRFRATQVLQWIHQRGADDFDQMTN-MSKALREKLKQVAEIRGPEV 72
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
++ T+ DGT K ++++++ +ETV IP + E+G T CVSSQ+GC L C+FC+TG
Sbjct: 73 VYDE-TSKDGTRKWVMRMDNGNSVETVLIP-DGERG----TLCVSSQIGCSLDCTFCSTG 126
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
K GF+RNL++ E++GQV + F +TNVV MGMGEP+LN +V++A +
Sbjct: 127 KRGFNRNLTAAEVIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDAMNLM 186
Query: 186 NKDVQIG--QRMITISTVGVPNTIKKLAS---------------------------YKLQ 216
+D+ G +R +T+ST GV + +L+ Y +
Sbjct: 187 MEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLHAPNDELRNKLVPLNKKYPIS 246
Query: 217 STLAI-----------RSA--------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPI 257
LA R A G+NDQ EHA ELA LL + +NLIPFNP
Sbjct: 247 ELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELAVLLRDL--PCKINLIPFNPF 304
Query: 258 EGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
SD++RP A F L T+IR TRG D AACGQL
Sbjct: 305 PESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACGQL 348
>gi|307244457|ref|ZP_07526566.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
17678]
gi|306492150|gb|EFM64194.1| 23S rRNA m2A2503 methyltransferase [Peptostreptococcus stomatis DSM
17678]
Length = 345
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 150/325 (46%), Gaps = 56/325 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W R + +P+S R LQE R + DGT K L +
Sbjct: 29 RGSQIYSWIYRN--IRDFDEMNNIPKSLRTKLQEHAVIGNIEKDLRLDSKIDGTKKYLFR 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETV + + RLT CVS+QVGC + C FCA+ G SRNL + EI+ Q+
Sbjct: 87 LNDGNIIETVAMDYD-----TRLTVCVSNQVGCRMGCRFCASTIDGLSRNLEAWEILDQI 141
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTI 207
+ ++E RV+N+V MG GEP+ N ++ + + +N+ + IG R IT+ST G+ + I
Sbjct: 142 IKVQEDLGKRVSNIVMMGSGEPLDNYENSIRFLKLVNEKNGLNIGNRHITLSTCGIVDRI 201
Query: 208 KKLASYKLQSTLAIR--------------------------------------------- 222
+ LA ++ LAI
Sbjct: 202 RDLADLEIPINLAISLHSPFDEERQKIMPVANKYKVEQIIEACHYYIGKTNRRITFEYSL 261
Query: 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282
GVND + A + +LL G HVNLIP NPIE D+++P + F LE + I
Sbjct: 262 IKGVNDSKKEAERIVKLLK--GMLCHVNLIPINPIEERDFEKPDILYINKFKAYLEKNNI 319
Query: 283 TTSIRQTRGLDASAACGQLRNEFQK 307
+IR + G D S ACGQLR K
Sbjct: 320 PVTIRNSMGADISGACGQLRRSVSK 344
>gi|403049734|ref|ZP_10904218.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 361
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 152/305 (49%), Gaps = 60/305 (19%)
Query: 57 FRNDLQEAGWTVGRL---PIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
F DL+ T+ + I + +GT+K LIKL ++E V IP EK R+T
Sbjct: 51 FNKDLRHKLNTIAHITPPKIEEIHKSEEGTIKYLIKLTSGSMVEMVRIP---EKK--RIT 105
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV-LA-IEEIFKHRVTNVVFMGMGEP 171
C+SSQ GC L+C+FCATG GF NLS++EI+GQV LA + +VTN+VFMGMGEP
Sbjct: 106 LCISSQAGCALQCTFCATGAQGFESNLSANEIIGQVWLANFYNSSQQKVTNIVFMGMGEP 165
Query: 172 MLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTI---------------------- 207
MLN K V+E+ + + + + ++ ITIST G+ I
Sbjct: 166 MLNFKPVIESAKIMKDQMAYSLSRKRITISTSGITPQINQLSSEIDVSLAISLHAPIDSL 225
Query: 208 ---------------------KKLASYKLQSTLAIRSA---GVNDQVEHAVELAELLHEW 243
K LA Y+ + ++ I G+ND ++ A +LA LL +
Sbjct: 226 RDKIVPINKKYPIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKKLARLLSDV 285
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
+NLIPFNP EGS Y+R +K + F L S T++R TRG ACGQL
Sbjct: 286 --SCKINLIPFNPFEGSSYKRSSQKNIEQFKSILMSKGFITTLRVTRGDAVDGACGQLVG 343
Query: 304 EFQKS 308
+ S
Sbjct: 344 KLNNS 348
>gi|336436837|ref|ZP_08616547.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336006656|gb|EGN36689.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 343
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 155/328 (47%), Gaps = 63/328 (19%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI---FRTVTAADGTVK 85
RG+Q W HVR S + ++ R L EA + + P+ R + DGT K
Sbjct: 27 RGKQIYEWLHVRLADSFDE--MTNLSKALREKL-EAQYAI--FPVELAARQESKLDGTNK 81
Query: 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEI 145
L +L D ++E+V + + + C+SSQVGC + C FCA+ GG RNLS E+
Sbjct: 82 FLFRLRDGNMVESVLMRYKHGN-----SVCISSQVGCRMGCRFCASTIGGLERNLSPSEM 136
Query: 146 VGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGV 203
+GQ+ I+++ RV+NVV MG GEP+ N ++ L R L + + I QR IT+ST G+
Sbjct: 137 LGQIYQIQKMIGERVSNVVIMGTGEPLDNYENFLTFIRLLTDEHGLHISQRNITVSTCGI 196
Query: 204 PNTIKKLASYKLQSTLAIR----------------------------------------- 222
+ LA KLQ TLA+
Sbjct: 197 VPRMYDLAKEKLQITLALSLHGSTQEKRKQLMPVANKYDLREVLEACDNYFHETGRRITF 256
Query: 223 ----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
GVND E A EL LL R H+NLIP NPI+ D++RP +K L F LE
Sbjct: 257 EYSMVHGVNDTEEDARELTALLKH--RNCHLNLIPVNPIKERDFERPDRKNALNFKNKLE 314
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQ 306
I +IR+ G D ACGQLR +Q
Sbjct: 315 KSGINVTIRREMGSDIDGACGQLRRSYQ 342
>gi|255656559|ref|ZP_05401968.1| radical SAM protein [Clostridium difficile QCD-23m63]
gi|296449989|ref|ZP_06891753.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
gi|296878370|ref|ZP_06902378.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
gi|296261259|gb|EFH08090.1| cfr family radical SAM enzyme [Clostridium difficile NAP08]
gi|296430668|gb|EFH16507.1| cfr family radical SAM enzyme [Clostridium difficile NAP07]
Length = 343
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 160/327 (48%), Gaps = 58/327 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKL 86
P RG Q W + GA KT +P+S RN L+E +G + I + + D T K
Sbjct: 27 PFRGSQIFSW-IYKGA-KTFEDMNNIPKSLRNKLEEIS-CIGHIDIELKLESKVDNTKKY 83
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L L+D +IETV + + R+T CVS+QVGC + C+FCA+ G RNL EI+
Sbjct: 84 LFLLDDGNIIETVMMDYDS-----RVTVCVSNQVGCRMGCNFCASTMDGLIRNLEPWEIL 138
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVP 204
QV+ I+E RV+N+V MG GEP+ N ++ + + +N+ + IG R IT+ST G+
Sbjct: 139 DQVIKIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIV 198
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
+ +LA ++ LA+
Sbjct: 199 PKMYELADLEIAINLALSLHSPYDEERRKIMPVANAYSIKEILDACRYYIKKTNRRVTFE 258
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND + A LA+LL G HVNLIP N +E +Y++P K + F +LE
Sbjct: 259 YSLIKGVNDSEKEAKALAKLLK--GMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEK 316
Query: 280 HKITTSIRQTRGLDASAACGQLRNEFQ 306
+ I ++R + G D S ACGQLR +++
Sbjct: 317 NNIPATVRMSMGSDISGACGQLRRKYK 343
>gi|257065510|ref|YP_003145182.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
20476]
gi|256793163|gb|ACV23833.1| radical SAM enzyme, Cfr family [Slackia heliotrinireducens DSM
20476]
Length = 344
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 152/322 (47%), Gaps = 56/322 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W GAS T + ++ R +L E + I + DGT K +++
Sbjct: 29 RAKQLVQWIYGRGAS-TYDEMTNLSKALRQELSEKA-PLRTAEIIDKQVSKDGTRKYVVQ 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +E V +P ED R+T C S+QVGCP+ CSFCATGK GF+RNL E++ Q+
Sbjct: 87 FYDGAAVEMVAMPYED-----RMTVCFSTQVGCPMACSFCATGKEGFTRNLLPGEMLDQI 141
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN-KDVQ-IGQRMITISTVGVPNTI 207
+ E+ RV+N+V MG GEP+LN +V+ A R N KD + IG R ITIST G+ I
Sbjct: 142 IIAEKDMNRRVSNLVGMGQGEPLLNYDNVMAALRFANSKDGRGIGARHITISTCGILKGI 201
Query: 208 KKLASYKLQSTLAI-------------------------RSA------------------ 224
+ K Q TLA+ +SA
Sbjct: 202 DDFSREKEQFTLAVSLHSAIQETRDELMPKVANQPLFRLKSALQTYVKRTGRRATLEYIM 261
Query: 225 --GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282
G ND +H L + + HVNLIP N IEGS +Q KK F L +
Sbjct: 262 INGYNDDDDHLDALVDFCDDL--LCHVNLIPLNNIEGSPWQPSSKKQTQKFLNVLNASGT 319
Query: 283 TTSIRQTRGLDASAACGQLRNE 304
++R +RG D ACGQL+N+
Sbjct: 320 EATLRDSRGADIDGACGQLKNK 341
>gi|404481896|ref|ZP_11017125.1| 23S rRNA methyltransferase [Clostridiales bacterium OBRC5-5]
gi|404344866|gb|EJZ71221.1| 23S rRNA methyltransferase [Clostridiales bacterium OBRC5-5]
Length = 346
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 160/326 (49%), Gaps = 55/326 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W +R + + ++FR L+E+ + + DGT K L
Sbjct: 25 RAKQLFEW-MRKSLISSFDECTNLSKAFREKLKESTSLTNLKAVEVFKSKLDGTQKYLFA 83
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
LED +IE+V + E + C+SSQVGC + C FCA+ G RNLS+ E++ Q+
Sbjct: 84 LEDGNIIESVRMKYEHGN-----SVCISSQVGCRMGCKFCASTLDGLVRNLSASEMLDQI 138
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTI 207
+I+++ R++N+V MG GEPM N ++++ + ++ + + I QR IT+ST G+ I
Sbjct: 139 YSIQKLLGERISNIVVMGSGEPMDNYDNIVKFVKIISSEMGLNISQRNITVSTCGIVPKI 198
Query: 208 KKLASYKLQSTLA---------IRS----------------------------------- 223
+ LA L TLA IR
Sbjct: 199 RALADEGLSITLALSLHAPNDEIRKTIMPVANKYALKDVISACDYYFKKTGRRVSYEYSL 258
Query: 224 -AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282
AGVND ++ A+ L +L++ GR H+NLIP NPI+ D+++ K + AF LE H++
Sbjct: 259 VAGVNDNIKEAMNLVKLVN--GRNIHINLIPVNPIKERDFKQSDKLKIKAFRDFLEKHRV 316
Query: 283 TTSIRQTRGLDASAACGQLRNEFQKS 308
++R+ G D ACGQLR F +S
Sbjct: 317 NATVRREMGRDIDGACGQLRRRFIQS 342
>gi|254976171|ref|ZP_05272643.1| radical SAM protein [Clostridium difficile QCD-66c26]
gi|255093561|ref|ZP_05323039.1| radical SAM protein [Clostridium difficile CIP 107932]
gi|255315304|ref|ZP_05356887.1| radical SAM protein [Clostridium difficile QCD-76w55]
gi|255517972|ref|ZP_05385648.1| radical SAM protein [Clostridium difficile QCD-97b34]
gi|255651088|ref|ZP_05397990.1| radical SAM protein [Clostridium difficile QCD-37x79]
gi|260684153|ref|YP_003215438.1| radical SAM protein [Clostridium difficile CD196]
gi|260687812|ref|YP_003218946.1| radical SAM protein [Clostridium difficile R20291]
gi|384361795|ref|YP_006199647.1| ribosomal RNA large subunit methyltransferase N [Clostridium
difficile BI1]
gi|260210316|emb|CBA64637.1| radical SAM protein [Clostridium difficile CD196]
gi|260213829|emb|CBE05812.1| radical SAM protein [Clostridium difficile R20291]
Length = 343
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 160/327 (48%), Gaps = 58/327 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKL 86
P RG Q W + GA KT +P+S RN L+E +G + I + + D T K
Sbjct: 27 PFRGSQIFSW-IYKGA-KTFDDMNNIPKSLRNKLEEVS-CIGNIDIELKLESKVDNTKKY 83
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L L+D +IETV + + R+T CVS+QVGC + C+FCA+ G RNL EI+
Sbjct: 84 LFLLDDGNIIETVMMDYDS-----RVTVCVSNQVGCRMGCNFCASTMDGLIRNLEPWEIL 138
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVP 204
QV+ I+E RV+N+V MG GEP+ N ++ + + +N+ + IG R IT+ST G+
Sbjct: 139 DQVIKIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIV 198
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
+ +LA ++ LA+
Sbjct: 199 PKMYELADLEIAINLALSLHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNRRVTFE 258
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND + A LA+LL G HVNLIP N +E +Y++P K + F +LE
Sbjct: 259 YSLIKGVNDSEKEAKALAKLLK--GMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEK 316
Query: 280 HKITTSIRQTRGLDASAACGQLRNEFQ 306
+ I ++R + G D S ACGQLR +++
Sbjct: 317 NNIPATVRMSMGSDISGACGQLRRKYK 343
>gi|298705390|emb|CBJ28680.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 335
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 149/320 (46%), Gaps = 54/320 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W GA +P++ R L + TVG L + + DGT KL +
Sbjct: 7 RAKQVLKWIFEGGAESFEDMAN-IPKTLRAKLAKVA-TVGALEVAARQVSKDGTKKLAYR 64
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IE+V +P D R TAC+SSQ GC + C FCATG+ GF R LS+ EI Q
Sbjct: 65 LSDGQIIESVLMPYSDG----RRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEIFEQA 120
Query: 150 LAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNT 206
+ + R ++NVVFMGMGEP+ N K+V+EA R +N ++ IG R ITISTVG+
Sbjct: 121 YRFSQELQKRGDRLSNVVFMGMGEPLANYKNVMEAVRRINTELGIGARHITISTVGLVPR 180
Query: 207 IKKLASYKLQSTLAI---------RSA--------------------------------- 224
I +L+ +Q LA+ R A
Sbjct: 181 ILRLSQENIQVKLAVSLHAANDRERGALLPVNRRFPLSELMDACREYVDVSGRRMTFEWA 240
Query: 225 ---GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
G ND E A EL LL HVN+IP NP +G AV F L +
Sbjct: 241 LIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGYKGGPSMADAVNQFVEVLAKNG 300
Query: 282 ITTSIRQTRGLDASAACGQL 301
+ + R RG+D A CGQL
Sbjct: 301 VPATPRIRRGIDIDAGCGQL 320
>gi|126700199|ref|YP_001089096.1| radical SAM-family protein [Clostridium difficile 630]
gi|255101744|ref|ZP_05330721.1| radical SAM protein [Clostridium difficile QCD-63q42]
gi|255307613|ref|ZP_05351784.1| radical SAM protein [Clostridium difficile ATCC 43255]
gi|423084335|ref|ZP_17072840.1| 23S rRNA m2A2503 methyltransferase [Clostridium difficile
002-P50-2011]
gi|423088031|ref|ZP_17076416.1| 23S rRNA m2A2503 methyltransferase [Clostridium difficile
050-P50-2011]
gi|423092610|ref|ZP_17080414.1| 23S rRNA m2A2503 methyltransferase [Clostridium difficile
70-100-2010]
gi|123066578|sp|Q182S0.1|RLMN_CLOD6 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|115251636|emb|CAJ69469.1| putative radical SAM-family protein [Clostridium difficile 630]
gi|357542640|gb|EHJ24682.1| 23S rRNA m2A2503 methyltransferase [Clostridium difficile
002-P50-2011]
gi|357543559|gb|EHJ25576.1| 23S rRNA m2A2503 methyltransferase [Clostridium difficile
050-P50-2011]
gi|357553480|gb|EHJ35227.1| 23S rRNA m2A2503 methyltransferase [Clostridium difficile
70-100-2010]
Length = 343
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 160/327 (48%), Gaps = 58/327 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKL 86
P RG Q W + GA KT +P+S RN L+E +G + I + + D T K
Sbjct: 27 PFRGSQIFSW-IYKGA-KTFDDMNNIPKSLRNKLEEVS-CIGHIDIELKLESKVDNTKKY 83
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L L+D +IETV + + R+T CVS+QVGC + C+FCA+ G RNL EI+
Sbjct: 84 LFLLDDGNIIETVMMDYDS-----RVTVCVSNQVGCRMGCNFCASTMDGLIRNLEPWEIL 138
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVP 204
QV+ I+E RV+N+V MG GEP+ N ++ + + +N+ + IG R IT+ST G+
Sbjct: 139 DQVIKIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIINEKNGLNIGYRHITLSTCGIV 198
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
+ +LA ++ LA+
Sbjct: 199 PKMYELADLEIAINLALSLHSPYDEERRKIMPVANAYSIEEILNACRYYIKKTNRRVTFE 258
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND + A LA+LL G HVNLIP N +E +Y++P K + F +LE
Sbjct: 259 YSLIKGVNDSEKEAKALAKLLK--GMLCHVNLIPINKVEEREYEKPDKAFIYKFRDSLEK 316
Query: 280 HKITTSIRQTRGLDASAACGQLRNEFQ 306
+ I ++R + G D S ACGQLR +++
Sbjct: 317 NNIPATVRMSMGSDISGACGQLRRKYK 343
>gi|431794642|ref|YP_007221547.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784868|gb|AGA70151.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 357
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 154/328 (46%), Gaps = 55/328 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W V+ A + + + + LQ G T+ + + DGT K L +
Sbjct: 30 RGRQVFQW-VQQKAIQGWDEMKNISVLDQKKLQ-TGLTLQPFTKVKEQVSRDGTRKFLFR 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE V + + K R T CVS+Q+GC + CSFCATG GG RNLS EIVGQV
Sbjct: 88 CYDGETIECVLMDYDRLKNRDRHTVCVSTQIGCAVGCSFCATGLGGLRRNLSPGEIVGQV 147
Query: 150 LAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
L I I + +VTN+VFMGMGEP+LN VL+A LN IG R +TIST G
Sbjct: 148 LDITHIMRQEDPDFQVTNIVFMGMGEPLLNYDPVLKALHLLNHPSGQGIGMRRMTISTSG 207
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVNDQV-------------------------------- 230
V I++LA Q LA+ N+
Sbjct: 208 VAAKIRRLARDNPQVGLAVSLHSANNTSRNQLIPMNRRYPLEELMAACQEYTELTNRRIT 267
Query: 231 ------------EHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
E A E+ +LL G+ HVNLIP NP+ + RP + + FA LE
Sbjct: 268 FEIALISGQATREAAEEVGQLLK--GQLSHVNLIPVNPVVETGMARPTAREIQEFAQVLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQ 306
+ I S+R+ +G D AACGQLR + +
Sbjct: 326 AMGIPVSVREEKGTDIDAACGQLRRQVE 353
>gi|291276281|ref|YP_003516053.1| radical SAM protein [Helicobacter mustelae 12198]
gi|290963475|emb|CBG39305.1| Putative radical-SAM-proteins [Helicobacter mustelae 12198]
Length = 379
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 158/310 (50%), Gaps = 61/310 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----G 108
+P++ +N L + + + L I + T+ DGT K L K D E+V I + +EK G
Sbjct: 58 LPKALKNKLSK-DYRIKHLEIMKVETSCDGTKKYLFKTLDGHTFESVLIKMREEKIDCEG 116
Query: 109 PM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
+ R T CVSSQ+GC + C+FC T KGGF RNLSS EIV QVL +++ + +
Sbjct: 117 RIIHGSRYTFCVSSQIGCKVGCAFCFTAKGGFVRNLSSGEIVEQVLQLKKDNSLAPEKRV 176
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+VFMGMGEP+ NL++V +A R +++ + I R TIST G+ I KL L L
Sbjct: 177 NIVFMGMGEPLNNLENVAQAIRIMSELDGLSISPRRQTISTSGIAPKIAKLGELDLGVQL 236
Query: 220 AI---------RS------------------------------------AGVNDQVEHAV 234
AI RS VND ++ A
Sbjct: 237 AISLHAVDDELRSRLIPMNKAYNIKSIIDAVRQFPVDTRKKVMFEYLVIKDVNDDLKSAK 296
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
L +LL G VNLI FNP EGS++QRP + V FA L + +IR++RG+D
Sbjct: 297 ILLKLLD--GIRAKVNLILFNPHEGSEFQRPEMEQVKKFADFLVQRGLLATIRESRGIDI 354
Query: 295 SAACGQLRNE 304
SAACGQLR +
Sbjct: 355 SAACGQLREK 364
>gi|390444460|ref|ZP_10232237.1| ribosomal RNA large subunit methyltransferase N [Nitritalea
halalkaliphila LW7]
gi|389664467|gb|EIM75959.1| ribosomal RNA large subunit methyltransferase N [Nitritalea
halalkaliphila LW7]
Length = 367
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 149/282 (52%), Gaps = 56/282 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K +KL D++++E+V IP E R+TACVSSQVGC L C+FCAT + R
Sbjct: 88 SVDGTIKNAVKLHDDKIVESVLIPTEK-----RITACVSSQVGCSLDCNFCATARLKRMR 142
Query: 139 NLSSHEIVGQVLAI----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ- 193
NL EI QV+AI E+ F+ +TN+VFMGMGEP+LN +VL A + +G
Sbjct: 143 NLQPDEIYDQVVAIKEEAEQFFQRPLTNIVFMGMGEPLLNYANVLAAIEKITSPEGLGMA 202
Query: 194 -RMITISTVGVPNTIKKLASYKLQSTLAI-----------RSAGVNDQVEHAVELAELLH 241
R IT+STVG+P I+++A +++ LA+ R +ND+ ELAE L
Sbjct: 203 PRRITLSTVGIPKMIRRMADEEVKFNLAVSLHSAINETRSRLMPINDK-SPLEELAEALV 261
Query: 242 EWGRGHH---------------------------------VNLIPFNPIEGSDYQRPYKK 268
W + VN+I +NPI+ D+++ ++
Sbjct: 262 YWYQKTQRRVTYEYVIWQGINDDERHARALVKFCRHIPSKVNIIQYNPIDEGDFRQAAQE 321
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
AV + LE + I +R++RG D AACGQL N+ + + L
Sbjct: 322 AVDMYVRILEENGIVAKVRRSRGQDIDAACGQLANKNEVATL 363
>gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
Length = 359
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 159/337 (47%), Gaps = 62/337 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R RQ W + G S + S R L+ + + R TA+DGT K L
Sbjct: 23 PFRARQVLRWIYKGGESDFDAMS-DLAISLREKLKLIA-CIQSPKVMREETASDGTRKWL 80
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ + +ETV IP E+G R T CVS+Q GC L C+FC+TGK GF+RNLS+ EI+G
Sbjct: 81 LDVGTGNAVETVFIP---EEG--RGTLCVSTQAGCALDCAFCSTGKQGFNRNLSTAEIIG 135
Query: 148 QV-LAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIS 199
QV A E+ K VTNVV MGMGEP+LN + + A R + D G +R +T+S
Sbjct: 136 QVWWANRELGKDADGNWPVTNVVLMGMGEPLLNFDNTVNALRLMLDDNAYGLSRRRVTVS 195
Query: 200 TVGVPNTIKKL---------------------------ASYKLQSTLA------------ 220
T GV + +L Y LQ +A
Sbjct: 196 TSGVVPAMDRLRDECPVALAISLHAPNDALRNVLVPINQKYPLQELMAACQRYLEKAPRD 255
Query: 221 ------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
+ AGVND V+HA EL EL+ + NLIPFNP + YQR VL F
Sbjct: 256 FVTFEYVMLAGVNDSVQHARELIELVRD--VPCKFNLIPFNPFPQAPYQRSDMPTVLRFR 313
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
L I T+IR+ RG D +AACGQL + Q R
Sbjct: 314 DVLMQAGIVTTIRKVRGDDIAAACGQLAGQVQDKTKR 350
>gi|237741553|ref|ZP_04572034.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
gi|229429201|gb|EEO39413.1| radical SAM domain-containing protein [Fusobacterium sp. 4_1_13]
Length = 358
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 153/283 (54%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
++ D T K L +LED R IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 ISKIDRTEKFLFELEDKRTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + V
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
VE+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|430744575|ref|YP_007203704.1| 2-vinyl bacteriochlorophyllide hydratase [Singulisphaera acidiphila
DSM 18658]
gi|430016295|gb|AGA28009.1| 23S rRNA m2A2503 methyltransferase [Singulisphaera acidiphila DSM
18658]
Length = 350
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 154/306 (50%), Gaps = 57/306 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L +A W V + + DGT KLL+ D R IE V + E E R
Sbjct: 48 LPKALREQL-DAEWQVFATEVAYHHVSPDGTDKLLLGCADGRRIECV-LMAEGE----RR 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGE 170
T C+S+QVGC + C FCA+G G RNL+ E+V QV+ + + + +TN+V MGMGE
Sbjct: 102 TVCISTQVGCGMGCVFCASGLKGVERNLTRGEMVEQVVRLRNLLPAEETITNLVVMGMGE 161
Query: 171 PMLNLKSVLEA--HRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI------- 221
+ NL ++L A C ++ + +GQR +TISTVG+P + LA Q LA+
Sbjct: 162 SLANLDNLLAALDRICSSEGLGLGQRRVTISTVGLPEKMMVLAGLGRQYHLAVSLHAPTE 221
Query: 222 --------------------------RSA------------GVNDQVEHAVELAELLHEW 243
R++ G+ND+VE A LA+LL
Sbjct: 222 ALRNELVPINEKVGLGAVIDAADAYFRNSGRQVTFEYVMLRGINDRVEDARALADLLE-- 279
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
R HVNLIP+NP+ Y+RP+ + F + ++ S+R+T+G + AACGQLR
Sbjct: 280 ARKAHVNLIPYNPVATLPYERPFPSTIQKFVSIVRGRGVSVSVRKTKGREIDAACGQLRR 339
Query: 304 EFQKSP 309
F+ P
Sbjct: 340 RFEDRP 345
>gi|406900971|gb|EKD43763.1| hypothetical protein ACD_72C00130G0003 [uncultured bacterium]
Length = 346
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 159/311 (51%), Gaps = 61/311 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIP-VEDEKGPM- 110
+ +S R+ L W + + +T + DGT K L++ D R++E+V +P + ++ P
Sbjct: 36 LSKSLRDKLVAEPWMTVKEKVLQT-SKNDGTRKALLEFADGRVVESVLMPRISKKQIPGD 94
Query: 111 --RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR----VTNVV 164
R T CVSSQVGCP+ C+FCATGK GF+RNLS EI+ Q+ ++I + V N+V
Sbjct: 95 RPRYTICVSSQVGCPMACTFCATGKLGFARNLSYREILDQMRYWQQILWEKDEGEVDNIV 154
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK---------- 214
FMG GEP+LN ++V + L K IGQR IT+STVGVP ++ K+ + K
Sbjct: 155 FMGQGEPLLNYENVKLTLKILIKYANIGQRKITLSTVGVPESMTKMVTEKDFPAVRFALS 214
Query: 215 LQSTLA----------------------------------------IRSAGVNDQVEHAV 234
L S LA I G+ND +H
Sbjct: 215 LHSALAETRASIIPSNRPGFLDFLVEWAKKYHTAFPSRTHFIGLEYIMLKGINDDAKHLN 274
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSD-YQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293
L +L+ + G VNLIP+N D +Q + + ++ + +H IT +IR+++GLD
Sbjct: 275 ALIKLVLKLG-SIRVNLIPYNSSSCKDEFQGTDMEIIQSWQKKMNNHDITCTIRRSQGLD 333
Query: 294 ASAACGQLRNE 304
AACGQL N+
Sbjct: 334 IDAACGQLANK 344
>gi|442610727|ref|ZP_21025437.1| Ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747756|emb|CCQ11499.1| Ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 377
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 148/303 (48%), Gaps = 62/303 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 78 ASDGTIKYALALEGGQEVETVWIPEKD-----RATLCVSSQVGCALECTFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + + + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 133 NLKVSEIIGQVWRVATDIGLYNDSTRRPITNVVMMGMGEPLLNLNNVVPAMELMMDDWGF 192
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + L Y ++ LA
Sbjct: 193 GLSKRRVTLSTSGVVPALDLLKERIDVALAISLHAPNNPLRDEIVPINKKYPIEEFLAAC 252
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ G+ND +HA EL ++L G +NLIPFNP GSDYQ
Sbjct: 253 RRYIDGSKANKDVTIEYVMLQGINDTTDHAHELVQVLK--GTPSKINLIPFNPFPGSDYQ 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESDI 323
R + F+ L+ +T +R+TRG D AACGQL + + R+ E+ I
Sbjct: 311 RSSNSRIDRFSKVLQEAGLTCIVRRTRGDDIDAACGQLVGDVKDRTKRLLKKKQMDENAI 370
Query: 324 AVA 326
+++
Sbjct: 371 SIS 373
>gi|372268286|ref|ZP_09504334.1| radical SAM enzyme, Cfr family protein [Alteromonas sp. S89]
Length = 403
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 145/285 (50%), Gaps = 63/285 (22%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ + + +ADGT K LI++ +IETV IP D R T CVSSQVGC L CSFCATG
Sbjct: 99 VLKQMDSADGTRKWLIEVTGGNVIETVYIPDGD-----RGTLCVSSQVGCSLDCSFCATG 153
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH-------RVTNVVFMGMGEPMLNLKSVLEAHRCL 185
K GF+R+L++ EI+GQV + F +VTNVV MGMGEP+LN +V+++ +
Sbjct: 154 KQGFNRDLTAAEIIGQVWIACKSFGQLQPNGPRKVTNVVMMGMGEPLLNFDNVVDSMNLM 213
Query: 186 NKD--VQIGQRMITISTVGVPNTIKKLA-------------------------SYKLQST 218
+D I +R +T+ST GV + +LA + K
Sbjct: 214 MEDNAYGISKRRVTLSTSGVVPALDRLAEVTDVSLAISLHAPNDELRNELVPINKKYPIA 273
Query: 219 LAIRSAG----------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+ + SA VND+ EHA +LAELL + +NLIPFNP
Sbjct: 274 MLLDSAQRYIENMPDNHRKMTIEYTMIREVNDRPEHAHQLAELLRDV--PVKINLIPFNP 331
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
E SDYQR A+ F L T ++R TRG D AACGQL
Sbjct: 332 FELSDYQRVSNNALRRFQQILLDKGYTVTVRTTRGDDIDAACGQL 376
>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
Length = 402
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 163/345 (47%), Gaps = 67/345 (19%)
Query: 15 PAAQVICFFFFTCPSRGR--QRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP 72
P A++I FF + R Q W + GA V ++ R L++
Sbjct: 39 PEAKLIAFFESIGEKKFRAIQVMKWIHQLGADNFDDMSN-VSKALRAKLKDCAEIYAP-E 96
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R + +ADGT K LI++ ++ETV IP D R T CVSSQVGC L CSFCATG
Sbjct: 97 VVRQLDSADGTRKFLIRVAGGNVVETVFIPDGD-----RGTLCVSSQVGCSLDCSFCATG 151
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH-------RVTNVVFMGMGEPMLNLKSVLEAHRCL 185
K GF+R+L++ EI+GQV + F VTNVV MGMGEP+LN +V++A +
Sbjct: 152 KQGFNRDLTAAEIIGQVWIAAKSFGQLQANGPRTVTNVVMMGMGEPLLNFDNVVDAMNLM 211
Query: 186 NKD--VQIGQRMITISTVGVPNTIKKLASY-------------------------KLQST 218
D I +R +T+ST GV + +L+ Y K
Sbjct: 212 MHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHAPNDELRNELVPINRKYPIA 271
Query: 219 LAIRSA----------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+ + SA VND+ +HA +LAELL + +NLIPFNP
Sbjct: 272 MLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLAELLRDV--PVKINLIPFNP 329
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
S+Y+R A+ F L T++R TRG D AACGQL
Sbjct: 330 FNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACGQL 374
>gi|205829720|sp|Q6MDD0.2|RLMN2_PARUW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
2; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 2; AltName:
Full=23S rRNA m2A2503 methyltransferase 2; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
2; AltName: Full=tRNA m2A37 methyltransferase 2
Length = 358
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 143/286 (50%), Gaps = 61/286 (21%)
Query: 70 RLPIFRTVTAADG----TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLR 125
RLP+ V + T+K L +L D L+E+V I +R T CVSSQVGCP +
Sbjct: 59 RLPVLELVRYTESIDQETIKFLWRLRDGNLVESVLIL-----SGIRRTVCVSSQVGCPAK 113
Query: 126 CSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAH 182
C+FCA+G+ GF RNL EI+ Q+L I +V++VV+MGMGEP+ N +SV+ +
Sbjct: 114 CAFCASGQQGFFRNLRPTEIIEQILQINAWLSSKGEKVSHVVYMGMGEPLKNYESVVASI 173
Query: 183 RCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA---------IRS-------- 223
R L+ I QR IT+STVGV IK+L+ L+ L IR
Sbjct: 174 RVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYARK 233
Query: 224 ----------------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255
AG+ND +HA ELA LL G+ VNLIP+N
Sbjct: 234 YPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAHLLK--GKQCTVNLIPYN 291
Query: 256 PIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
PI G +RP KKA+ F L I + R T+G D AACGQL
Sbjct: 292 PIPGLRLKRPEKKAIKQFRSVLYGSHIVNTCRYTKGDDIGAACGQL 337
>gi|163786382|ref|ZP_02180830.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
ALC-1]
gi|159878242|gb|EDP72298.1| hypothetical protein FBALC1_14392 [Flavobacteriales bacterium
ALC-1]
Length = 346
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 151/293 (51%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
+ EA + + + + + ++DGT+K ++L D+ ++E+V IP R TACVSSQV
Sbjct: 58 MLEANFVINHIKVDQMQRSSDGTIKNAVRLHDDLIVESVLIPT-----ATRTTACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHR-VTNVVFMGMGEPMLNLK 176
GC L C FCAT + RNL+ EI QV+AI+ ++ +R ++N+VFMGMGEP++N
Sbjct: 113 GCSLDCKFCATARLKRMRNLNPDEIYDQVVAIDNESRLYHNRPLSNIVFMGMGEPLMNYN 172
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+VL+A + +G + I +ST GVP IKK+A K++ LA+ D V ++
Sbjct: 173 NVLKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDKVKFKLAVSLHSAIDDVRTSI 232
Query: 235 ----------ELAELLHEWGRG---------------------------------HHVNL 251
+L E L W VNL
Sbjct: 233 MPFNATFPLNDLREALQYWYAATKNRITYEYVVWDGINDKRKDVDALVEFCKFAPSKVNL 292
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ ++Q+ KA+ + LE++ IT ++R++RG D AACGQL N+
Sbjct: 293 IEYNPIDDGEFQQANSKALDMYVNVLEANNITVTVRRSRGKDIDAACGQLANK 345
>gi|291297322|ref|YP_003508720.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
gi|290472281|gb|ADD29700.1| radical SAM enzyme, Cfr family [Meiothermus ruber DSM 1279]
Length = 342
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 141/269 (52%), Gaps = 53/269 (19%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DG+VK L L D + E V +P + K T C+SS VGCP C+FCATG+ GF RNL
Sbjct: 73 DGSVKYLFTLLDGQKTEAVYMPYLNRK-----TICISSMVGCPAGCTFCATGRMGFGRNL 127
Query: 141 SSHEIVGQVLAIEEIFKH---RVTNVVFMGMGEPMLNLKSVLEA-HRCLNKD-VQIGQRM 195
++ E++ QVL +H + NVV MGMGEP+LNL++V +A R L+ + + + R
Sbjct: 128 TAAEMLDQVLFAAYHQQHAPREIRNVVLMGMGEPLLNLENVFKALERMLHPEGLAMSPRR 187
Query: 196 ITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVE-------HAVELAELL-------- 240
IT+STVG+P I K+A + L+ LA+ +D+ H +AE++
Sbjct: 188 ITLSTVGIPRGIYKMAEWGLEVRLALSLHAPDDETRQRIIPTAHRYSIAEIMEAVRHYYA 247
Query: 241 ------------------HEW----------GRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
H+W G H+NLIP+NP EG+ +Q + +L
Sbjct: 248 KTKRRITLEYTLLKGVNDHDWQARALAQHFRGLSVHMNLIPWNPWEGAPHQGTPRAQILK 307
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQL 301
FA LE I TS+R +RG D AACGQL
Sbjct: 308 FAAILEQQGIPTSVRWSRGRDVGAACGQL 336
>gi|386287223|ref|ZP_10064398.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
gi|385279755|gb|EIF43692.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
Length = 386
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 149/304 (49%), Gaps = 63/304 (20%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ + + + DGT K +++ N L+E V IP + ++G T CVSSQVGC L CSFCATG
Sbjct: 82 VVKQLDSIDGTRKWAVEVGGNNLVEAVLIP-DGQRG----TLCVSSQVGCSLDCSFCATG 136
Query: 133 KGGFSRNLSSHEIVGQV-LAIEEI------FKHRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
K GF R+L++ EI+GQV LAI+ K VTNVV MGMGEP+LN +V+EA +
Sbjct: 137 KQGFMRDLTAAEIIGQVWLAIKSYDGFNNGNKRIVTNVVMMGMGEPLLNFDNVVEAMSLM 196
Query: 186 NKDVQIG--QRMITISTVGVPNTIKKLAS---------------------------YKLQ 216
D G +R +T+ST GV + KL Y +
Sbjct: 197 LDDFGYGLSKRRVTLSTSGVVPMLDKLGDVSTVSLAISLHAPNDELRSQLVPINKKYPIA 256
Query: 217 STLAIRS--------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
LA AGVND VEHA ELAE+L + VNLIPFNP
Sbjct: 257 ELLAASKRYIAKQDDTHRVVTIEYTLIAGVNDGVEHAKELAEVLRDL--PCKVNLIPFNP 314
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSN 316
S+Y+RP AV F + T++R RG D AACGQL + Q R +
Sbjct: 315 FSLSNYKRPSNNAVNRFWLVMTEAGYVTTVRTPRGDDIDAACGQLAGQVQDRTKRSERHR 374
Query: 317 SSSE 320
+E
Sbjct: 375 QKAE 378
>gi|388257762|ref|ZP_10134941.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
gi|387938929|gb|EIK45481.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
Length = 392
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 162/346 (46%), Gaps = 69/346 (19%)
Query: 15 PAAQVICFFFFTCPSRGR--QRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP 72
P A++I FF + R Q W + GA V + R L+ RLP
Sbjct: 28 PEAKLIAFFESIGEKKFRAIQVMKWIHQLGADNFDDMTN-VSKDLRAKLKNIAEI--RLP 84
Query: 73 -IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCAT 131
+ + + DGT K LI++ +IETV IP D R T CVSSQVGC L CSFCAT
Sbjct: 85 EVVQQFDSTDGTRKFLIRVTGGSVIETVFIPDGD-----RGTLCVSSQVGCSLDCSFCAT 139
Query: 132 GKGGFSRNLSSHEIVGQVLAIEEIFKH-------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
GK GF+R+L++ EI+GQV + F RVTNVV MGMGEP+LN +V+++
Sbjct: 140 GKQGFNRDLTAAEIIGQVWIAAKSFGQLQANGPRRVTNVVMMGMGEPLLNFDNVVDSMNL 199
Query: 185 LNKD--VQIGQRMITISTVGVPNTIKKLASY-------------------------KLQS 217
+ D I +R +T+ST GV + +L+ Y K
Sbjct: 200 MMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHAPNDELRNELVPINRKYPI 259
Query: 218 TLAIRSAG----------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFN 255
+ + SA VND+ HA ELAELL + +NLIPFN
Sbjct: 260 AMLLDSAKRYIEAMPDTHRKITIEYTLIDQVNDRPHHAHELAELLRDVPV--KINLIPFN 317
Query: 256 PIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
P S+Y+R A+ F L T++R TRG D AACGQL
Sbjct: 318 PFNLSNYKRVSNNALRKFQDILMEAGYITTVRTTRGDDIDAACGQL 363
>gi|422879396|ref|ZP_16925862.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
gi|422929242|ref|ZP_16962184.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 29667]
gi|422932213|ref|ZP_16965144.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK340]
gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
gi|339615058|gb|EGQ19741.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 29667]
gi|339618997|gb|EGQ23587.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK340]
Length = 357
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 145/277 (52%), Gaps = 53/277 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGTVK L +L D LIETV + + L+ CV++QVGC + C+FCA+G R
Sbjct: 73 SADGTVKYLFELPDGMLIETVLM-----RQHYGLSVCVTTQVGCNIGCTFCASGLIKKQR 127
Query: 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMI 196
+L++ EIV Q++ +++ F RV+++V MG+GEP N +VL+ R +N D + IG R I
Sbjct: 128 DLNNGEIVAQIMLVQKYFDERVSHIVVMGIGEPFDNYDNVLKFVRTVNDDKGLAIGARHI 187
Query: 197 TISTVGVPNTIKKLASYKLQSTLAI-----------------RS---------------- 223
T+ST G+ + I+ A+ +Q LA+ RS
Sbjct: 188 TVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRTSIMRINRSFPIEKLFAAIEYYIET 247
Query: 224 ------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRPYKKAV 270
VND VE A ELAELL + +VNLIP+NP+ D Y R K+ V
Sbjct: 248 TNRRVTFEYIMLNEVNDGVEQAKELAELLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERV 307
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
+AF L+ + + +RQ G D AACGQLR+ K
Sbjct: 308 MAFYDTLKKNGVNCVVRQEHGTDIDAACGQLRSNTMK 344
>gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM
3043]
gi|123387343|sp|Q1QTL1.1|RLMN_CHRSD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens
DSM 3043]
Length = 375
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 147/305 (48%), Gaps = 63/305 (20%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ ++ R L+E G ++ T+ DGT K ++++ED +ETV IP E G R
Sbjct: 55 LSKALRTRLEELAEIRGPRVVYEG-TSQDGTRKWVLEVEDGSYVETVLIPAE---GGKRR 110
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVF 165
T CVSSQVGC L CSFC+TGK GF RNL+S EI+GQV F R VTNVV
Sbjct: 111 TLCVSSQVGCSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFGARRDTTNRPVTNVVM 170
Query: 166 MGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAIR- 222
MGMGEP+LN +V+ A + + D G +R +T+ST GV + +L +L +LA+
Sbjct: 171 MGMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGD-ELDVSLAVSL 229
Query: 223 ----------------------------------------------SAGVNDQVEHAVEL 236
VNDQ HA EL
Sbjct: 230 HAANDELRNELVPLNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEEL 289
Query: 237 AELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASA 296
A LL + +NLIPFNP S Y++P + V+ F L T +R TRG D A
Sbjct: 290 AALLADL--PSKINLIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDA 347
Query: 297 ACGQL 301
ACGQL
Sbjct: 348 ACGQL 352
>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
Length = 383
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 140/279 (50%), Gaps = 63/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L++ + L+E+V IP D R T CVSSQVGC L CSFC+TGK GF R
Sbjct: 84 SADGTRKWLVRSIEGGLVESVLIPDGD-----RATLCVSSQVGCSLDCSFCSTGKQGFER 138
Query: 139 NLSSHEIVGQV-LAIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
+L++ +I+GQV LAI+ + VTNVV MGMGEP+LN +V+ A + D+
Sbjct: 139 DLTASDIIGQVWLAIDSFDAFQPGKDRVVTNVVMMGMGEPLLNFDAVVSAMDLMMDDLAY 198
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAIR 222
G +R +T+ST GV + KLA Y + LA
Sbjct: 199 GLSKRRVTLSTSGVVPALDKLAEVSCVSLAVSLHAPNDALRNQLVPINKKYPIAELLASA 258
Query: 223 S--------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVNDQ EHA ELA LL + +NLIPFN GS Y
Sbjct: 259 QRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELAVLLKNF--PCKINLIPFNAFPGSSY 316
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
QRP AV F L ++R TRG D SAACGQL
Sbjct: 317 QRPSGNAVSRFWQVLIDAGFIVTVRTTRGDDISAACGQL 355
>gi|376297165|ref|YP_005168395.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans ND132]
gi|323459727|gb|EGB15592.1| radical SAM enzyme, Cfr family [Desulfovibrio desulfuricans ND132]
Length = 348
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 143/282 (50%), Gaps = 57/282 (20%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
I R + DGT+K L+KL D +LIETV IP++D R + C+S+QVGC + C+FC TG
Sbjct: 67 IARVAESRDGTIKFLLKLVDGKLIETVLIPMQD-----RYSQCLSTQVGCAMACTFCNTG 121
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCL--N 186
K GF RNL+ EI+GQ+L + R + N+VFMGMGEP+LNL++++ L
Sbjct: 122 KLGFERNLTYGEIMGQILVGRQYLADRNMNELKNLVFMGMGEPLLNLETLVRVLTDLPCE 181
Query: 187 KDVQIGQRMITISTVGVPNTIK---------------------------KLASYKLQSTL 219
+ + + R +STVG P+ +K K A L +
Sbjct: 182 RGLSLSWRRSMVSTVGFPDKLKILGDLEIALPAISLHAPTQELRARIMPKAARVHLDDLM 241
Query: 220 AIRSA-----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
A SA VND +EHA +LA+L+ R +NLI +N EG Y
Sbjct: 242 AALSAYPMRPRERITFEYLLLKDVNDSMEHADQLAKLIDR--RKGKINLIAYNATEGMPY 299
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
P + V AF L H +T IR++ G D AACGQL+ +
Sbjct: 300 GAPDRDRVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLKAD 341
>gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 330
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 143/286 (50%), Gaps = 61/286 (21%)
Query: 70 RLPIFRTVTAADG----TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLR 125
RLP+ V + T+K L +L D L+E+V I +R T CVSSQVGCP +
Sbjct: 31 RLPVLELVRYTESIDQETIKFLWRLRDGNLVESVLIL-----SGIRRTVCVSSQVGCPAK 85
Query: 126 CSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAH 182
C+FCA+G+ GF RNL EI+ Q+L I +V++VV+MGMGEP+ N +SV+ +
Sbjct: 86 CAFCASGQQGFFRNLRPTEIIEQILQINAWLSSKGEKVSHVVYMGMGEPLKNYESVVASI 145
Query: 183 RCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA---------IRS-------- 223
R L+ I QR IT+STVGV IK+L+ L+ L IR
Sbjct: 146 RVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHAPNQHIRKKIIPYARK 205
Query: 224 ----------------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255
AG+ND +HA ELA LL G+ VNLIP+N
Sbjct: 206 YPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAHLLK--GKQCTVNLIPYN 263
Query: 256 PIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
PI G +RP KKA+ F L I + R T+G D AACGQL
Sbjct: 264 PIPGLRLKRPEKKAIKQFRSVLYGSHIVNTCRYTKGDDIGAACGQL 309
>gi|395803418|ref|ZP_10482665.1| ribosomal RNA large subunit methyltransferase N [Flavobacterium sp.
F52]
gi|395434464|gb|EJG00411.1| ribosomal RNA large subunit methyltransferase N [Flavobacterium sp.
F52]
Length = 347
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 160/324 (49%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W GA V ++ R+ L E + + + + ++DGTVK ++
Sbjct: 29 RGNQVYEWLWSKGAHSFEDMTN-VAKATRSML-ENNFVINHIKVDTMQKSSDGTVKNAVR 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP E R TACVSSQVGC L C+FCAT + RNL EI QV
Sbjct: 87 LHDGLVVESVLIPTE-----TRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQV 141
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
LAI++ + H ++N+VFMGMGEP++N +V++A + + +G + I +ST G+
Sbjct: 142 LAIDKESRLYYNHPLSNIVFMGMGEPLMNYNNVIKAIDMITSEEGLGMSPKRIMVSTSGI 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH------ 247
P IKK+A ++ LA+ D+ + +L E L W R
Sbjct: 202 PKMIKKMADDDVKFKLAVSLHSAIDETRARIMPFSKNFPLKDLREALEYWYRKTKSKVSY 261
Query: 248 ---------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ ++Q+ +++++A+ ALE+
Sbjct: 262 EYVVWKGINDDKASVDALVKFCKYVPCKVNLIEYNPIDDGEFQQASEESIMAYIKALENI 321
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
+ +R++RG D AACGQL N+
Sbjct: 322 GVVVKVRRSRGKDIDAACGQLANK 345
>gi|294783089|ref|ZP_06748413.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
gi|294479967|gb|EFG27744.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 1_1_41FAA]
Length = 358
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 160/306 (52%), Gaps = 62/306 (20%)
Query: 58 RNDLQEAGWTVGRLPIFR----TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRL 112
R L+E + +P F V+ D T K L +LED IETV + D K +R
Sbjct: 56 REILKENAY----IPFFNLLKHQVSKLDKTEKFLFELEDKGTIETVLLRHRDSKNKEIRN 111
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMG 169
T CVSSQVGCP++CSFCATG+GG+ RNLS EI+ QV +E + + + N+VFMGMG
Sbjct: 112 TLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRLRKKDESLNNLVFMGMG 171
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGV 226
EP+LN+ ++ A ++ + + I +R ITIST G+ + I+K+ K+ LA+ + +
Sbjct: 172 EPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEKIPIELAVSLHSAI 231
Query: 227 NDQ--------------------VEH------------------------AVELAELLHE 242
N++ VE+ A LA+ +H+
Sbjct: 232 NEKRDQIIPINKNFPLEDLSAVLVEYQKQTKRRITFEYILIDNFNISEVDANALADFIHQ 291
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQL 301
+ H VNLIP+N +EG +++RP K + F L++ K+ ++RQ +G D ACGQL
Sbjct: 292 F--DHVVNLIPYNEVEGVEHKRPSMKKIDRFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
Query: 302 RNEFQK 307
R +K
Sbjct: 350 RQRNKK 355
>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
profundicola AmH]
gi|259491991|sp|B9L721.1|RLMN_NAUPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
Length = 354
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 166/330 (50%), Gaps = 62/330 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W R + +P+ + L++ + + L + A DGT K L K
Sbjct: 24 RTKQLYQWVYRKYVDDFEEM-KNIPKDLKAKLKKE-FIINPLELINHEIATDGTEKFLFK 81
Query: 90 LEDNRLIETVGIPVEDEK------GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
+ DN +ETV I ++DE+ + T CVS+QVGC + C+FC T KGGF RNLS+
Sbjct: 82 MHDNHTVETVLIKMKDEEIKDGKIKEAKYTVCVSTQVGCKVGCAFCLTAKGGFVRNLSAG 141
Query: 144 EIVGQVLAIEEIFK----HRVTNVVFMGMGEPMLNLKSVLEAHRCL-NKD-VQIGQRMIT 197
EIV QV +++ FK ++ NVV+MGMGEP+ N ++++A + L N D + I R T
Sbjct: 142 EIVAQVWWMKK-FKNFDENKALNVVYMGMGEPLDNYDALVKAIKILANPDGMNISPRRQT 200
Query: 198 ISTVGVPNTIKKLA----------------------------SYKLQSTL-AIRS----- 223
+ST G+ IK+L +Y ++S + AIR
Sbjct: 201 VSTSGIAPKIKRLGNENLGVNLAISLHAVDDELREQLIPLNKAYNIESVIDAIREFPIDK 260
Query: 224 -----------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
VND +E A +L +LL+ G VNLI FNP G++++RP +
Sbjct: 261 RKKVMFEYLVIKDVNDDIESAKKLVKLLN--GIPSKVNLIYFNPYPGTNFKRPDDATMKK 318
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLR 302
F L + I +IR+++G+D SAACGQLR
Sbjct: 319 FQDYLINKGIMCTIRKSKGMDISAACGQLR 348
>gi|397170950|ref|ZP_10494360.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
gi|396087424|gb|EJI85024.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
Length = 375
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K ++ LE + +ETV IP +D R T CVSSQVGC L CSFC+T + GF+R
Sbjct: 78 SADGTIKFVMALEGGQEVETVWIPEKD-----RRTLCVSSQVGCALDCSFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + +I + VTNVV MGMGEP+LNL +V+ A + +D
Sbjct: 133 NLSVSEIIGQVWRVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNVVPAMELMMEDFGF 192
Query: 192 G--QRMITISTVGV---------------------PNT------IKKLASYKLQSTLA-- 220
G +R +T+ST GV PN + Y ++ LA
Sbjct: 193 GLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPVNKKYPMEEFLAAS 252
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ G+ND + A ELA+ L + +NLIPFNP GS Y+
Sbjct: 253 RRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKD--TPSKINLIPFNPYPGSPYK 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F L+ H T +R+TRG D AACGQL
Sbjct: 311 RSSNSRIDRFNKVLQDHGFTVMVRKTRGDDIDAACGQL 348
>gi|237753454|ref|ZP_04583934.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375721|gb|EEO25812.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 354
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 154/300 (51%), Gaps = 57/300 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ + L+E +T I + + DG+VK L + +DN E V + ++++K
Sbjct: 48 LPKELKTYLKET-FTTTSAQICKQEKSLDGSVKYLFQAQDNLTYEAVFLKMKEDK----F 102
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMG 169
T C+SSQVGC + CSFC T KGGF RNLS+ EIV QVLAI + I ++ N+V+MGMG
Sbjct: 103 TLCLSSQVGCKVGCSFCLTAKGGFVRNLSTGEIVYQVLAIKKAQNIPHNKAINIVYMGMG 162
Query: 170 EPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI------ 221
EP+ NL +V + L + + I R TIST G+ IKKL + L LAI
Sbjct: 163 EPLDNLDNVTNTIKILAELDGLSISTRRQTISTSGIAPKIKKLGTLNLGVQLAISLHAVD 222
Query: 222 ---RSA------------------------------------GVNDQVEHAVELAELLHE 242
RS G+ND ++ A +L LL++
Sbjct: 223 DKLRSELMPINKAYNIQAVIDEVVQFPIDSRKRVMFEYLVIDGLNDGLDSAKKLVALLNK 282
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VNLI FNP EGS Y+RP + V AF L + +IR+++GLD SAACGQLR
Sbjct: 283 L--KAKVNLIYFNPHEGSIYKRPSAEKVEAFREFLLKKGLLCTIRESKGLDISAACGQLR 340
>gi|340750687|ref|ZP_08687525.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
mortiferum ATCC 9817]
gi|340562385|gb|EEO35365.2| ribosomal RNA large subunit methyltransferase N [Fusobacterium
mortiferum ATCC 9817]
Length = 352
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 152/282 (53%), Gaps = 57/282 (20%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
++ D T K L +LED IETV + +D++ T C+SSQVGC ++C+FCATG+GGF
Sbjct: 74 ISKIDKTEKFLFQLEDGNTIETVLLRHKDKRN----TLCISSQVGCAVKCAFCATGQGGF 129
Query: 137 SRNLSSHEIVGQVLAIE-EIFKH--RVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
R+L+ EI+ QV IE + K + N+VFMGMGEP+LNL +VL+A L+ + + I
Sbjct: 130 VRDLNVSEIINQVYTIERRLVKQGTNLNNIVFMGMGEPLLNLTNVLKALEILSNENGINI 189
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQVE--------------HAV-- 234
+R ITIST G+ I+K+ K+ LAI + +N++ + HAV
Sbjct: 190 SKRKITISTSGIVPNIEKILLEKVPVELAISLHSAINEKRDEIIPINRRYPLEDLHAVLQ 249
Query: 235 ----------------------------ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
LA+ +H++ H VNLIP NP+EG++ RP
Sbjct: 250 EYQRQTKRRITFEYILINNFNVSEGDANALADFVHDF--DHVVNLIPCNPVEGTEMTRPS 307
Query: 267 KKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ +IR+ +G D ACGQLR + +K
Sbjct: 308 DKKIERFVNFLQNVRKVNVTIRREKGTDIDGACGQLRQKNKK 349
>gi|393764186|ref|ZP_10352798.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
gi|392604816|gb|EIW87715.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
Length = 375
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K ++ LE + +ETV IP +D R T CVSSQVGC L CSFC+T + GF+R
Sbjct: 78 SADGTIKFVMALEGGQEVETVWIPEKD-----RRTLCVSSQVGCALDCSFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + +I + VTNVV MGMGEP+LNL +V+ A + +D
Sbjct: 133 NLSVSEIIGQVWRVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNVVPAMELMMEDFGF 192
Query: 192 G--QRMITISTVGV---------------------PNT------IKKLASYKLQSTLA-- 220
G +R +T+ST GV PN + Y ++ LA
Sbjct: 193 GLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPVNKKYPMEEFLAAS 252
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ G+ND + A ELA+ L + +NLIPFNP GS Y+
Sbjct: 253 RRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKD--TPSKINLIPFNPYPGSPYK 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F L+ H T +R+TRG D AACGQL
Sbjct: 311 RSSNSRIDRFNKVLQEHGFTVMVRKTRGDDIDAACGQL 348
>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
Length = 391
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/277 (42%), Positives = 144/277 (51%), Gaps = 63/277 (22%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGT K I++E L+E V IP D K R T CVSSQVGC L CSFC+TGK GF R+L
Sbjct: 91 DGTRKWAIRVEGGGLVEAVLIP--DGK---RATLCVSSQVGCSLDCSFCSTGKQGFQRDL 145
Query: 141 SSHEIVGQV-LAIE--EIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
S+ EI+GQV LAI+ + F+ VTNVV MGMGEP+LN +V+ A + +D I
Sbjct: 146 SAAEIIGQVWLAIKSYDAFQSAKGRIVTNVVMMGMGEPLLNFDNVVAAMDLMMEDNAYGI 205
Query: 192 GQRMITISTVGVPNTIKKLA---SYKLQSTL-----AIRS-------------------- 223
+R +T+ST GV + KLA L +L A+RS
Sbjct: 206 SKRRVTLSTSGVVPALDKLAKVSEVSLAVSLHAPNDALRSELVPINRKYPIAVLLESARN 265
Query: 224 -------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
AGVNDQ EHA ELA+LL G +NLIPFN + SDY+R
Sbjct: 266 YIDAQSDKKRVVTIEYTLIAGVNDQREHAQELAQLLK--GYPCKINLIPFNTFDQSDYRR 323
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
P AV F L ++R TRG D AACGQL
Sbjct: 324 PSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAACGQL 360
>gi|340345409|ref|ZP_08668541.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520550|gb|EGP94273.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 353
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 156/308 (50%), Gaps = 56/308 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK-- 107
+ +P + R+ L G+T+G V + DG T KLL+ L D +ETV I E K
Sbjct: 45 KQLPTAMRDKLIVDGYTIGSATETHRVVSDDGDTTKLLLNLTDGTPVETVLIQYEPTKIG 104
Query: 108 GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVV 164
G R T CVS+QVGC + C FCATG+ GF RNL + EIV QV+ + + R VTN+V
Sbjct: 105 GHPRSTICVSTQVGCAMGCIFCATGQMGFERNLKAEEIVAQVIHFANLLQQRGQHVTNLV 164
Query: 165 FMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR 222
FMGMGEP+ N + A R L + IGQR ITIST+G+ + I KLA LQ LAI
Sbjct: 165 FMGMGEPLANYDETIRAVRLLTHPRGFGIGQRNITISTIGIISGIDKLAEEDLQIGLAIS 224
Query: 223 --------------SAG-------------------------------VNDQVEHAVELA 237
+AG +ND E A ELA
Sbjct: 225 LHAPNDELRKKLVPTAGPHSVNELVAAGKRYFKRTGRRVTFEYALIENINDSQEIAKELA 284
Query: 238 ELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAA 297
LL G G HVNLIP N G ++QRP KK++L F L + ++R +G + SAA
Sbjct: 285 LLLE--GNGSHVNLIPINSTAG-NFQRPSKKSILEFERILLKSHVNCTVRVEKGSEISAA 341
Query: 298 CGQLRNEF 305
CGQLR +
Sbjct: 342 CGQLRTDI 349
>gi|307722066|ref|YP_003893206.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
DSM 16294]
gi|306980159|gb|ADN10194.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfurimonas autotrophica
DSM 16294]
Length = 364
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 162/314 (51%), Gaps = 61/314 (19%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVED----E 106
+ +P++ + +L + + V L I R ++DGT+K L +L+D + +E V + ++D E
Sbjct: 45 KNIPKAMKEELSQK-YIVNPLKIVRKEESSDGTIKYLFELQDGKTVEAVWLKMKDAQIDE 103
Query: 107 KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH---R 159
G + + T CVS+QVGC + CSFC T KGGF+R+LS+ EIV QV+ ++ H R
Sbjct: 104 NGEIIQEAKYTICVSTQVGCKVGCSFCLTAKGGFTRDLSAGEIVAQVVNLKRDNAHKHNR 163
Query: 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQS 217
N+V+MGMGEP+ NL+++ +A ++ + I + T+ST G+ N I KL L
Sbjct: 164 KINIVYMGMGEPLDNLENLAKAIEIFKEEEGLAISGKRQTVSTSGLSNKIDKLGKMDLGV 223
Query: 218 TLAIRSAGV---------------------------------------------NDQVEH 232
+AI V ND +
Sbjct: 224 HIAISLHAVDDELRTELIPMNKAHNINSIIEAVKRFPIDTRKRVMFEYLVIKNKNDDLGS 283
Query: 233 AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292
A +L +LL G VNLI FNP G+ Y+RP ++ ++ F L +H + ++IR ++G+
Sbjct: 284 AKKLVKLLS--GIKAKVNLIYFNPYPGTPYERPSREDMVKFQEYLINHGLLSTIRDSKGI 341
Query: 293 DASAACGQLRNEFQ 306
D SAACGQL+ + Q
Sbjct: 342 DISAACGQLKEKNQ 355
>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
gi|123753570|sp|Q2SDW1.1|RLMN_HAHCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
Length = 378
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 153/327 (46%), Gaps = 64/327 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W G S + ++ R L+E I+ ++A DGT K +++
Sbjct: 31 RATQLMKWMYHLGVSDFDLMTN-MSKALREKLKEVAEVSVPEVIYEDISA-DGTRKWVMR 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L IETV IP + G R T CVSSQ+GC L CSFC+TGK GF+RNLSS EI+GQ+
Sbjct: 89 LAGGNSIETVYIP---DNG--RGTLCVSSQIGCSLDCSFCSTGKQGFNRNLSSAEIIGQL 143
Query: 150 ------LAIEEIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIST 200
++ K R VTN+VFMGMGEP+LN +V+ A + D G +R +T+ST
Sbjct: 144 WIAARSFGDYDLSKERYVTNIVFMGMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVST 203
Query: 201 VGVPNTIKKLAS---------------------------YKLQSTLA------------- 220
G+ + KL Y ++ LA
Sbjct: 204 SGLVPALDKLGDVTDVSLAISLHAPNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKR 263
Query: 221 ------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
AGVND HA EL +LL + +NLIPFNP S Y+RP + A L F
Sbjct: 264 RITVEYTLIAGVNDSETHAHELRDLLRDL--PCKINLIPFNPFPNSGYERPSRNATLRFQ 321
Query: 275 GALESHKITTSIRQTRGLDASAACGQL 301
L ++R TRG D AACGQL
Sbjct: 322 KVLSDAGYVATVRTTRGDDIDAACGQL 348
>gi|336317392|ref|ZP_08572248.1| methyltransferase [Rheinheimera sp. A13L]
gi|335878325|gb|EGM76268.1| methyltransferase [Rheinheimera sp. A13L]
Length = 374
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 147/304 (48%), Gaps = 63/304 (20%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + R+ L+E + + R +ADGT+K ++ L + +ETV IP +D R
Sbjct: 53 INKKLRDKLKEKAVIAAPVVVTRQ-DSADGTIKFVMGLAGGQEVETVWIPEKD-----RR 106
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVF 165
T CVSSQVGC L C+FC+T + GF+RNL EI+GQV + +I + VTNVV
Sbjct: 107 TLCVSSQVGCALECTFCSTAQQGFNRNLKVSEIIGQVWRVAQIIGSYGDTGEKPVTNVVM 166
Query: 166 MGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS----------- 212
MGMGEP+LNL +V+ A + +D G +R +T+ST GV + L
Sbjct: 167 MGMGEPLLNLNNVVPAMELMLEDFGFGLSKRRVTLSTSGVVPALDMLKERIDVALAISLH 226
Query: 213 ----------------YKLQSTLA-------------------IRSAGVNDQVEHAVELA 237
Y ++ LA + GVND +E A ELA
Sbjct: 227 APNNTLRDELVPVNKKYPMEEFLAAAKRYVTDSRANDKVTVEYVMLDGVNDSMEQAHELA 286
Query: 238 ELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAA 297
L G VNLIPFNP GS Y+R + F L+ H T +R+TRG D AA
Sbjct: 287 HALK--GTPSKVNLIPFNPYPGSPYKRSSNSRIDRFNKVLQEHGYTVMVRKTRGDDIDAA 344
Query: 298 CGQL 301
CGQL
Sbjct: 345 CGQL 348
>gi|358468073|ref|ZP_09177720.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357065731|gb|EHI75907.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 358
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 157/304 (51%), Gaps = 58/304 (19%)
Query: 58 RNDLQEAGWTVGRLPIFR----TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRL 112
R L+E + +P F V+ D T K L +LED IETV + D K +R
Sbjct: 56 REILKEKAY----IPFFNLLKHQVSKLDKTEKFLFELEDKGTIETVLLRHRDSKNKEIRN 111
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMG 169
T CVSSQVGCP++CSFCATG+GG+ RNLS EI+ QV +E + + + N+VFMGMG
Sbjct: 112 TLCVSSQVGCPIKCSFCATGQGGYMRNLSVSEILNQVYTVERRLRKKDESLNNLVFMGMG 171
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGV 226
EP+LN+ ++ A ++ + + I +R ITIST GV I+K+ K+ LAI + +
Sbjct: 172 EPLLNIDNLSTALSIISNENGINISKRKITISTSGVVPGIEKILLEKIPIELAISLHSAI 231
Query: 227 NDQVEHAV---------ELAELLHEWGR-------------------------------- 245
N++ + + +L+ +L E+ +
Sbjct: 232 NEKRDQIIPINKNFPLEDLSAVLVEYQKQTKRRITFEYILIDNFNISEVDAYALSSFIHQ 291
Query: 246 -GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRN 303
H VNLIP+N +EG ++ RP K + F L++ K+ ++RQ +G D ACGQLR
Sbjct: 292 FDHVVNLIPYNEVEGVEHTRPSMKKIEKFYSYLKNVRKVNVTLRQEKGSDIDGACGQLRQ 351
Query: 304 EFQK 307
+K
Sbjct: 352 RNKK 355
>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
Length = 370
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 142/279 (50%), Gaps = 62/279 (22%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
++ DGT K ++++++ +ETV IP + E+G T CVSSQ+GC L C+FC+TGK GF+
Sbjct: 77 SSKDGTRKWVMRMDNGNSVETVLIP-DGERG----TLCVSSQIGCSLDCTFCSTGKRGFN 131
Query: 138 RNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV + F +TNVV MGMGEP+LN +V++A + +D+
Sbjct: 132 RNLTAAEIIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDAMNLMMEDLA 191
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI 221
G +R +T+ST GV + KL Y + LA
Sbjct: 192 YGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLHAPNDELRNQLVPLNKKYPIAELLAA 251
Query: 222 -----------RSA--------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R A GVNDQ EHA ELA +L G +NLIPFNP SD+
Sbjct: 252 TRRYLARLPDKRKATIEYTVIEGVNDQPEHARELAVVLR--GLPCKINLIPFNPFPESDF 309
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+RP A F L ++R TRG D AACGQL
Sbjct: 310 RRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACGQL 348
>gi|374375997|ref|ZP_09633655.1| 23S rRNA m(2)A-2503 methyltransferase [Niabella soli DSM 19437]
gi|373232837|gb|EHP52632.1| 23S rRNA m(2)A-2503 methyltransferase [Niabella soli DSM 19437]
Length = 348
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 147/302 (48%), Gaps = 56/302 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + R L E +T L I T ++DGT+K + + L E V IP E+ K
Sbjct: 51 ISKDLRQQLSE-DFTFPALSIDTTQHSSDGTIKSRFRTIEGHLTEGVLIPTEERK----- 104
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE----EIFKHRVTNVVFMGM 168
TACVSSQ+GC L C FCATG RNLS EI +V I E+F ++TN+VFMGM
Sbjct: 105 TACVSSQIGCSLSCKFCATGYLERKRNLSFDEIYDEVALINQQSLEVFDKKLTNIVFMGM 164
Query: 169 GEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGV 226
GEP+LN K+VL A ++ +G R IT+ST GV IK L K++ LA+
Sbjct: 165 GEPLLNYKNVLAAIDKISAPDGLGMSPRRITVSTAGVAKQIKHLGDDKVKFKLALSLHAA 224
Query: 227 NDQVEHAV----------ELAELLHEWGR------------------------------- 245
ND+ H + L E L+ + +
Sbjct: 225 NDKKRHEIMPINDTNNIQSLIEALNYFYKQTKNEITFEYILFNNFNDSLEDADELIKIYR 284
Query: 246 ---GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VNLI +NPIE + + +P ++ V AF LE HK+ +R++RG D AACGQL
Sbjct: 285 QVPADLVNLIEYNPIEFAKFTKPAEEKVDAFMQYLEKHKVNARLRRSRGKDIDAACGQLA 344
Query: 303 NE 304
N+
Sbjct: 345 NK 346
>gi|402814305|ref|ZP_10863899.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
gi|402508152|gb|EJW18673.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
Length = 360
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 145/281 (51%), Gaps = 60/281 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K L KL+D LIETV + K L+ CV++QVGC + CSFCA+G SR
Sbjct: 74 SADGTIKFLFKLQDGNLIETVLM-----KHKFGLSVCVTTQVGCNIGCSFCASGLLAKSR 128
Query: 139 NLSSHEIVGQVLAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQI 191
+LSS EIV Q++ ++ V+++V MG+GEP N ++++ R + +K + I
Sbjct: 129 DLSSGEIVEQIMKVQHHLDEMGQGDLVSHIVVMGIGEPFDNFENIINFLRVVTDHKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLA------------------------------- 220
G R IT+ST G+ N IK A L+ LA
Sbjct: 189 GARRITVSTSGLANKIKDFADINLRVNLALSLHAPNDELRTRIMKINRAIPIAKVMEAIQ 248
Query: 221 --------------IRSAGVNDQVEHAVELAELLHEWGRGH--HVNLIPFNPI-EGSDYQ 263
I VNDQ EHA+EL +L+ EW +VNLIP+NP+ E S YQ
Sbjct: 249 YFINTTNQRVTLEYILLRDVNDQQEHALELVKLIQEWNMQDEVNVNLIPYNPVDEHSQYQ 308
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
R ++++ F ++ + I+ S+R G D AACGQLR++
Sbjct: 309 RSEQESIRGFYDVMKKNNISCSVRLEHGTDIDAACGQLRSK 349
>gi|406936421|gb|EKD70145.1| hypothetical protein ACD_46C00621G0003, partial [uncultured
bacterium]
Length = 342
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 144/277 (51%), Gaps = 61/277 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT K L++L D IETV IP E +G T C+SSQVGC L C FC+TGK GF+R
Sbjct: 46 ASDGTHKWLLRLNDGNCIETVFIP-EKTRG----TLCISSQVGCILNCDFCSTGKQGFNR 100
Query: 139 NLSSHEIVGQV------LAIEE-IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++ Q+ L++++ I H VTNVV MGMGEP+LN +VL A + D
Sbjct: 101 NLTTAEMISQLWIAVRKLSLQQGIHDHAVTNVVMMGMGEPLLNFDNVLPALNLMLDDFAY 160
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLAI- 221
G +R +T+ST GV + +L Y L+ +A+
Sbjct: 161 GLSKRRVTVSTAGVVPIMYQLREMSEVALAVSLHAPNDELRNKIVPLNKKYPLKELMAVC 220
Query: 222 ---------RS--------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
RS A VND HA +L +LL G VNLIPFNP +DYQR
Sbjct: 221 REYFKDDNRRSITMEYVMLANVNDSPIHAKQLIKLLD--GVRAKVNLIPFNPFPHTDYQR 278
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ ++ F L + T+IR+TRG D AACGQL
Sbjct: 279 SDTETIMRFRDILMQAGLNTTIRRTRGDDIDAACGQL 315
>gi|296329385|ref|ZP_06871885.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153505|gb|EFG94323.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 358
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 153/283 (54%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDGGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ +E + + + N+VFMGMGEP+LN+ ++ +A ++ + +
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG+++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFIHQF--DHVVNLIPYNEVEGAEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKINKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|430377501|ref|ZP_19431634.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
gi|429540638|gb|ELA08667.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
Length = 402
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 142/282 (50%), Gaps = 61/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K + ++ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R
Sbjct: 96 SEDGTRKWVFEVAGGSLVETVLIPADDNKQFGRKTLCISSQVGCALDCSFCSTGKQGFER 155
Query: 139 NLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
NL+ EI+GQ+ + + ++RVTNVV MGMGEP+LN + V+ + + D
Sbjct: 156 NLTESEIIGQLFVANQSYMEGVPAVKRENRVTNVVMMGMGEPLLNYEPVVASMSLMLDDF 215
Query: 190 QIG--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA-----------IR 222
G +R +T+ST GV + LA + KL++ L I+
Sbjct: 216 GFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAPNDKLRNELVPINKKYPLAELIK 275
Query: 223 SA-----------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
+A VND EHA +LA LL + +NLIPFNP
Sbjct: 276 AAKAYVYDENPRHKKHVTIEYVMLKDVNDSDEHAHQLAVLLQDL--PSKINLIPFNPFAH 333
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y+R + AF+G L + +IRQTRG D AACGQL
Sbjct: 334 APYERSSNNRIHAFSGILNNAGFVCTIRQTRGDDIDAACGQL 375
>gi|146299542|ref|YP_001194133.1| radical SAM protein [Flavobacterium johnsoniae UW101]
gi|205829760|sp|A5FJ06.1|RLMN_FLAJ1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|146153960|gb|ABQ04814.1| radical SAM enzyme, Cfr family [Flavobacterium johnsoniae UW101]
Length = 349
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 160/324 (49%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W GA V ++ R+ L+E + + + + + DGTVK ++
Sbjct: 29 RGNQVYEWLWSKGAHSFEDMTN-VAKTTRSMLEE-NFVINHIKVDTMQRSNDGTVKNAVR 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP E R TACVSSQVGC L C+FCAT + RNL EI Q+
Sbjct: 87 LHDGLVVESVLIPTE-----TRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQI 141
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
+AI++ H ++N+VFMGMGEP++N +V++A + + +G + IT+ST G+
Sbjct: 142 MAIDKESRLYHNHPLSNIVFMGMGEPLMNYNNVIKAIDMVTSEEGLGMSPKRITLSTSGI 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH------ 247
P IKK+A ++ LA+ D+ + +L E L W R
Sbjct: 202 PKMIKKMADDDVKFRLAVSLHSAIDETRAKIMPFSKNFPLKDLREALEYWYRKTKSKVSY 261
Query: 248 ---------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ ++Q+ ++++LA+ ALE+
Sbjct: 262 EYVVWKGINDDKASVDALVKFCKYVPCKVNLIEYNPIDDGEFQQASEESILAYIKALENI 321
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
+ +R++RG D AACGQL N+
Sbjct: 322 GVVVKVRRSRGKDIDAACGQLANK 345
>gi|384097550|ref|ZP_09998671.1| ribosomal RNA large subunit methyltransferase N [Imtechella
halotolerans K1]
gi|383837518|gb|EID76918.1| ribosomal RNA large subunit methyltransferase N [Imtechella
halotolerans K1]
Length = 346
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 148/294 (50%), Gaps = 54/294 (18%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
++ E + + + + + + DGT+K ++L D+ ++E+V IP E R TACVSSQ
Sbjct: 57 EMLEENFVINHIKVDQMQRSNDGTIKNAVRLHDDLIVESVLIPTE-----TRTTACVSSQ 111
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNL 175
VGC L C FCAT + RNL+ EI QV+AI+ F ++N+VFMGMGEP++N
Sbjct: 112 VGCSLDCKFCATSRLKRMRNLNPDEIYDQVVAIDNESRLYFDRPLSNIVFMGMGEPLMNY 171
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHA 233
+VL+A + +G + IT+ST GVP I+K+A +++ LA+ D+V +
Sbjct: 172 NNVLKAIDKITSSEGLGMSPKRITVSTSGVPKMIRKMADDEVKFKLAVSLHSAIDEVRTS 231
Query: 234 V----------ELAELLHEWGRG---------------------------------HHVN 250
+ EL E L W VN
Sbjct: 232 IMPFNENFPLSELREALEYWYSKTKSRITYEYVVWKGINDSKRDVDALVKFCRFAPSKVN 291
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
LI +NPI+ ++Q+ +A+ + LE IT ++R++RG D AACGQL N+
Sbjct: 292 LIEYNPIDEGEFQQASDQAIQLYVSTLEQSGITVTVRRSRGKDIDAACGQLANK 345
>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
Length = 381
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 145/287 (50%), Gaps = 65/287 (22%)
Query: 72 PIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCAT 131
P+ ++DGT K L++++ L+ETV IP + R T CVSSQVGC L CSFC+T
Sbjct: 77 PVESQHDSSDGTRKWLVRVDGGGLVETVLIPDGN-----RATLCVSSQVGCSLDCSFCST 131
Query: 132 GKGGFSRNLSSHEIVGQV-LAIE--EIFK----HRVTNVVFMGMGEPMLNLKSVLEAHRC 184
GK GF R+LS+ EI+GQV LAI + FK VTNVV MGMGEP+LN +V+ A
Sbjct: 132 GKQGFQRDLSAAEIIGQVWLAINSYDAFKSGNGRVVTNVVMMGMGEPLLNFDNVVTAMDL 191
Query: 185 LNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAIR-------------------- 222
+ D+ G +R +T+ST GV + KLA +++LA+
Sbjct: 192 MMDDLGYGISKRRVTLSTSGVVPALDKLAEVS-EASLAVSLHAPNDELRNQLVPVNRRYP 250
Query: 223 ----------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPF 254
AGVNDQ + A ELA LL ++ +NLIPF
Sbjct: 251 IAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQARELATLLADF--PCKINLIPF 308
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NP S Y+RP AV F L ++R TRG D AACGQL
Sbjct: 309 NPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQL 355
>gi|340782108|ref|YP_004748715.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
gi|340556261|gb|AEK58015.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
Length = 370
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 134/275 (48%), Gaps = 54/275 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A DGT K L++L D IETV IP ED R T C+SSQVGC L CSFCATG G +R
Sbjct: 85 ACDGTRKWLLRLPDGNAIETVFIPEED-----RGTLCISSQVGCSLACSFCATGAQGLNR 139
Query: 139 NLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRM 195
NLSSHEIV QV +A + +TNVVFMGMGEP+LNLK V+ R L D G R
Sbjct: 140 NLSSHEIVAQVRVARRHLGLDAITNVVFMGMGEPLLNLKQVIPVIRLLLDDFAYGLSSRR 199
Query: 196 ITISTVGVPNTIKKLA---------------------------SYKLQSTLA-------- 220
+T+ST GV +++L Y L +A
Sbjct: 200 VTVSTAGVLPGLEQLGRETPVNLAISLHASRNDLRDELVPINRHYPLAQLMAACRSYPLP 259
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ GVND A L LL G VNLIPFNP GS Y+R +
Sbjct: 260 PRRRITFEYVMLDGVNDSDADARALVRLLR--GLPALVNLIPFNPFPGSPYRRSSLARID 317
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
AF + S I T R+ RG D +AACGQL +
Sbjct: 318 AFREIVLSAGIMTVTRRPRGDDIAAACGQLAGQVH 352
>gi|242310237|ref|ZP_04809392.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523534|gb|EEQ63400.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 346
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 165/324 (50%), Gaps = 60/324 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
R +Q W +VR + +P++ R L++ +T + I + ++DG+VK L
Sbjct: 25 RAKQIYHWLYVRY--ENNFDKMENLPKNLREFLKQ-DFTGDLVSIAKKEQSSDGSVKYLF 81
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
+ DN E V + ++++K T C+SSQ+GC + CSFC T KGGF RNLS+ E+V Q
Sbjct: 82 RTADNLTYEAVFLKMKEDK----FTLCLSSQIGCKVGCSFCLTAKGGFVRNLSAGEMVYQ 137
Query: 149 VLAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGV 203
V AI + I ++ N+V+MGMGEP+ NL++V + + L++ + I +R TIST G+
Sbjct: 138 VFAIKKDQNIPSNKAVNIVYMGMGEPLDNLENVSKCIQILSELDGLSISRRRQTISTSGI 197
Query: 204 PNTIKKLASYKLQSTLAIRSAG-------------------------------------- 225
IKKL + L LAI
Sbjct: 198 APKIKKLGALNLGVQLAISLHAVDDELRTKLMPINKAYNIQSVIDEVAIFPIDTRKRVMF 257
Query: 226 -------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VND +E A +L LL++ VNLI FNP EGS Y+RP K+ V AF L
Sbjct: 258 EYLMIDEVNDSLECAKKLVALLNKI--KAKVNLIYFNPHEGSPYKRPNKEKVEAFREFLL 315
Query: 279 SHKITTSIRQTRGLDASAACGQLR 302
+ +IR+++GLD SAACGQLR
Sbjct: 316 KKGLLCTIRESKGLDISAACGQLR 339
>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
Length = 372
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 160/346 (46%), Gaps = 68/346 (19%)
Query: 24 FFTC----PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVT 78
FFTC P R RQ W + + + +S R L E+ V LP I +
Sbjct: 19 FFTCLGEKPFRARQVLRWIYQRFVTDFSAMT-DLNKSLRKRLAESA--VISLPEIVQQHR 75
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L+++ N IETV IP ED R T C+SSQVGC L CSFCATGK GF+R
Sbjct: 76 SADGTRKWLLRIHGNNCIETVFIPEED-----RGTLCISSQVGCILDCSFCATGKQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG 192
NL+ EI+GQ+ +I + +TNVV MGMGEP+ N +V+ A + D G
Sbjct: 131 NLAISEIIGQLWLANKILGRTPKGERIITNVVMMGMGEPLANFNNVVAAMNLMLDDFSYG 190
Query: 193 Q--RMITISTVGVPNTIKKLAS---------------------------YKLQSTLA--- 220
R +T+ST G+ I +L + Y L+ L+
Sbjct: 191 LSWRRVTLSTAGMVPAIDRLRAVCPVSLAVSLHAPTDKLRDELVPLNKKYPLEDLLSACR 250
Query: 221 ---------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+ A VND HA L LL G VNLIPFNP GS Y+R
Sbjct: 251 RYVAGDRRRAVTFEYVMLADVNDSFSHARALLRLLQ--GLPAKVNLIPFNPFPGSVYRRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
+ + F L I T R+TRG D +AACGQL + Q R
Sbjct: 309 DAETIDRFREKLLRGGIMTVTRKTRGDDIAAACGQLAGQVQDRTRR 354
>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122941195|sp|Q0A989.1|RLMN_ALHEH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 153/293 (52%), Gaps = 58/293 (19%)
Query: 70 RLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSF 128
RLP + + DGT K L++++ + IETV IP + G R T CVSSQVGC L CSF
Sbjct: 61 RLPEVLAEQVSEDGTRKWLLRVDGGQAIETVFIP---DSG--RGTLCVSSQVGCALDCSF 115
Query: 129 CATGKGGFSRNLSSHEIVGQ-VLAIEEI--FKHRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
C+T + GF+RNLS+ EI+GQ +A +++ ++TNVVFMGMGEP+LNL++V+ A R +
Sbjct: 116 CSTAQQGFNRNLSTAEIIGQYYVAYDQLTGTGEQITNVVFMGMGEPLLNLEAVIPAVRLM 175
Query: 186 NKDVQIG--QRMITISTVGVPNTIKKL---ASYKLQSTL-----AIRSA----------- 224
D G +R +TIST GV ++++ L +L A+R
Sbjct: 176 TDDDAYGLSKRKVTISTSGVVTMLERMREQTDVSLAVSLHAPNNALRDELVPINRKHPLE 235
Query: 225 --------------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
GVNDQ HA ELA LL + VNLIPFNP
Sbjct: 236 RLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARLLGDI--PSKVNLIPFNPFP 293
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
G+ Y+ + +L F L+SH +T + R TRG D ACGQL + Q R
Sbjct: 294 GARYRCSPRGRILRFVRILQSHGLTATTRVTRGQDIDGACGQLVGKVQDRTRR 346
>gi|325286898|ref|YP_004262688.1| ribosomal RNA large subunit methyltransferase N [Cellulophaga
lytica DSM 7489]
gi|324322352|gb|ADY29817.1| Ribosomal RNA large subunit methyltransferase N [Cellulophaga
lytica DSM 7489]
Length = 347
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 160/324 (49%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + GA ++ + L + + + + + + ++DGT+K ++
Sbjct: 30 RGNQVYEWLWQKGAHSFEAMTNVSKETRQ--LLDDNFVINHIKVDQMQRSSDGTIKNAVQ 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP + R TACVSSQVGC L C FCAT + RNL+ EI QV
Sbjct: 88 LHDGLIVESVLIPTK-----TRTTACVSSQVGCSLDCRFCATSRLKRMRNLNPDEIYDQV 142
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGV 203
+AI+ F +++N+VFMGMGEP++N +VL+A + + + + + IT+ST GV
Sbjct: 143 VAIDNESRLYFDRKLSNIVFMGMGEPLMNYNNVLKAIDKITSTEGLAMSPKRITVSTSGV 202
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
P IKK+A +++ LA+ D++ ++ +L E L W
Sbjct: 203 PKMIKKMADDEVKFKLAVSLHSAVDEIRTSIMPFNATFPLKDLREALQYWYAKTKSRITY 262
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ ++Q+ KA+ + LE +
Sbjct: 263 EYVVWDGINDTQNDANALVDFCRFAPSKVNLIEYNPIDDGEFQQASNKAIDMYVTTLERN 322
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
IT ++R++RG D AACGQL N+
Sbjct: 323 GITVTVRRSRGKDIDAACGQLANK 346
>gi|294785829|ref|ZP_06751117.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
gi|294487543|gb|EFG34905.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 3_1_27]
Length = 358
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKG-PMRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDKGTIETVLLRHKDSKNREIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + V
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
VE+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|429728018|ref|ZP_19262763.1| 23S rRNA methyltransferase [Peptostreptococcus anaerobius VPI 4330]
gi|429150690|gb|EKX93587.1| 23S rRNA methyltransferase [Peptostreptococcus anaerobius VPI 4330]
Length = 352
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 153/304 (50%), Gaps = 56/304 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP 109
+ VP+S R+ L+E +G L I + + D T K L L D +IETV + +
Sbjct: 51 KNVPKSLRDKLREKS-IIGNLDIELKLESKIDNTKKYLFLLNDGNIIETVAMDYDS---- 105
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG 169
RLT CVS+QVGC + C+FCA+ GG SR+L + EI+ Q++ ++E RV+N+V MG G
Sbjct: 106 -RLTVCVSNQVGCRMGCNFCASTIGGLSRHLEAWEILDQIMKVQEDLGKRVSNIVMMGSG 164
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227
EP+ N + + + +N+ + IG R IT+ST G+ + I +LA ++ LAI
Sbjct: 165 EPLDNFDNSMRFLKLVNEKNGLNIGNRHITLSTCGLVDRILELADMQIPINLAISLHSPY 224
Query: 228 DQ---------------------------------VEHAV------------ELAELLHE 242
D+ E+A+ +L ELL
Sbjct: 225 DEERKEIMPIAKKYTIKELMDACRYYISKTNRRVTFEYALIKDKNNTDREAKKLVELLR- 283
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP NPI DY++P + + F L+ +KI SIR + G D S ACGQLR
Sbjct: 284 -GMLCHVNLIPINPIAERDYEKPNIEYINKFKNYLDKNKIPVSIRNSMGSDISGACGQLR 342
Query: 303 NEFQ 306
+++
Sbjct: 343 RDYK 346
>gi|262066381|ref|ZP_06025993.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
gi|291379946|gb|EFE87464.1| radical SAM enzyme, Cfr family [Fusobacterium periodonticum ATCC
33693]
Length = 358
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 158/306 (51%), Gaps = 62/306 (20%)
Query: 58 RNDLQEAGWTVGRLPIFR----TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRL 112
R L+E + +P F V+ D T K L +LED IETV + D K +R
Sbjct: 56 REILKENAY----IPFFNLLKHQVSKLDKTEKFLFELEDKGTIETVLLRHRDSKNKEIRN 111
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMG 169
T CVSSQVGCP++CSFCATG+GG+ RNLS EI+ QV +E + + + N+VFMGMG
Sbjct: 112 TLCVSSQVGCPVKCSFCATGQGGYMRNLSVSEILNQVYTVERRLRKKDESLNNLVFMGMG 171
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGV 226
EP+LN+ ++ A ++ + + I +R ITIST GV I+K+ K+ LA+ + +
Sbjct: 172 EPLLNIDNLSTALSIISNENGINISKRKITISTSGVVPGIEKILLEKIPIELAVSLHSAI 231
Query: 227 NDQ--------------------VEH------------------------AVELAELLHE 242
N++ VE+ A LA+ +H+
Sbjct: 232 NEKRDQIIPINKNFPLEDLSAVLVEYQKQTKRRITFEYILIDNFNISEVDANALADFIHQ 291
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQL 301
+ H VNLIP+N +EG ++ RP K + F L++ K+ ++RQ +G D ACGQL
Sbjct: 292 F--DHVVNLIPYNEVEGVEHTRPSMKKIERFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
Query: 302 RNEFQK 307
R +K
Sbjct: 350 RQRNKK 355
>gi|375109391|ref|ZP_09755639.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
gi|374570481|gb|EHR41616.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
Length = 375
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K ++ LE + +ETV IP +D R T CVSSQVGC L CSFC+T + GF+R
Sbjct: 78 SADGTIKFVMALEGGQEVETVWIPEKD-----RRTLCVSSQVGCALDCSFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + +I + VTNVV MGMGEP+LNL +V+ A + +D
Sbjct: 133 NLSVSEIIGQVWRVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNVVPAMELMMEDFGF 192
Query: 192 G--QRMITISTVGV---------------------PNT------IKKLASYKLQSTLA-- 220
G +R +T+ST GV PN + Y ++ LA
Sbjct: 193 GLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPVNKKYPMEEFLAAS 252
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ G+ND + A ELA+ L + +NLIPFNP GS Y+
Sbjct: 253 RRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKD--TPSKINLIPFNPYPGSPYK 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F L+ + T +R+TRG D AACGQL
Sbjct: 311 RSSNSRIDRFNKVLQDYGFTVMVRKTRGDDIDAACGQL 348
>gi|254304122|ref|ZP_04971480.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324314|gb|EDK89564.1| hypothetical protein FNP_1792 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 358
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDGGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ QV +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + V
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LA+ + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
VE+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 VEYQKQTKRRVTFEYILIDNFNISETDANALADFIHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|256844888|ref|ZP_05550346.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
gi|256718447|gb|EEU32002.1| radical SAM family enzyme [Fusobacterium sp. 3_1_36A2]
Length = 358
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKG-PMRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDKGTIETVLLRHKDSKNREIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + +
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
VE+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISEADANALADFIHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [gamma proteobacterium HTCC2207]
gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
HTCC2207]
Length = 392
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 161/339 (47%), Gaps = 67/339 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLI 88
RG Q W + G + +S R L + V +P + + DGT K LI
Sbjct: 43 RGTQILKWIHQYGIDDLNEMTN-ISKSLRESLADVAEVV--MPEVVSCQDSVDGTRKWLI 99
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
K++ IE V IP D R T CVSSQ+GC L CSFCATGK GF+R+L++ EI+GQ
Sbjct: 100 KVDGGSCIEMVYIPERD-----RGTLCVSSQIGCALDCSFCATGKQGFARDLTTAEIIGQ 154
Query: 149 VLAIEEIFKH-------RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIS 199
+ + F RVTNVV MGMGEP++N +V++A + D G +R +T+S
Sbjct: 155 LWIAAKSFDQFDTKNPRRVTNVVMMGMGEPLMNFNNVVDAMSLMMDDNAYGLSKRRVTLS 214
Query: 200 TVGVPNTIKKLASY--------------KLQSTLA-----------IRSAG--------- 225
T GV + KL +L++ L I SA
Sbjct: 215 TAGVVPELDKLGDVSDVSLAISLHAPNDELRNQLVPINRKYPLVDFIGSAKRYLDKMPDN 274
Query: 226 -------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
VND+ EHA EL+ LL + +NLIPFNP GS+Y++ K A+
Sbjct: 275 RRKVTVEYTLMDRVNDRDEHAKELSVLLRDL--PCKINLIPFNPFPGSEYKKVTKVALNR 332
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
F L++ T ++R TRG D +AACGQL E R
Sbjct: 333 FRDILQNDGYTVTVRTTRGDDIAAACGQLAGEVNDRTKR 371
>gi|313142339|ref|ZP_07804532.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131370|gb|EFR48987.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 292
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 151/282 (53%), Gaps = 56/282 (19%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
+ I + ++DG+VK L K DN E V + ++++K T C+SSQVGC + CSFC
Sbjct: 10 VEIAKKEQSSDGSVKYLFKTADNLTYEAVFLKMKEDK----FTLCLSSQVGCKVGCSFCL 65
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
T KGGF RNL++ E+V QV AI++ I ++ N+V+MGMGEP+ NL++V + + L++
Sbjct: 66 TAKGGFVRNLNAGEMVYQVFAIKKDQNIPSNKAVNIVYMGMGEPLDNLENVTKCIQILSE 125
Query: 188 --DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------ 224
+ I +R TIST G+ IKKL + L LAI R+
Sbjct: 126 LDGLSISRRRQTISTSGIAPKIKKLGALDLGVQLAISLHAVDDELRTKLMPINKAYNIQN 185
Query: 225 ------------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
G+ND +E A +L LL++ VNLI FNP EGS
Sbjct: 186 IIDEVVAFPIDSRKRVMFEYLMIDGINDSLECAKKLVALLNKI--KAKVNLIYFNPHEGS 243
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y+RP K+ V AF L + +IR+++GLD SAACGQLR
Sbjct: 244 LYKRPSKEKVEAFREYLLKKGLLCTIRESKGLDISAACGQLR 285
>gi|291549489|emb|CBL25751.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus torques L2-14]
Length = 346
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 146/300 (48%), Gaps = 54/300 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ ++ R L+E + + + R ++ DGT K L +L D ++E+V + +
Sbjct: 48 LSKALREKLEENYEILPVVMLERQISQIDGTNKFLFRLYDGNVVESVLMKYKHGN----- 102
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+SSQVGC + C+FCA+ GG RNLS E++GQ+ I++I RV+NVV MG GEPM
Sbjct: 103 SVCISSQVGCRMGCAFCASTIGGLVRNLSPSEMLGQIYQIQKISGERVSNVVIMGTGEPM 162
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
N + L+ L + + I QR +T+ST G+ +K+LA LQ TLA+
Sbjct: 163 DNYDNFLKFIHLLTDEHGLNISQRNVTVSTCGIVPKMKELAKEHLQITLALSLHGSNQEK 222
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
GVND E A EL LL +
Sbjct: 223 RRKLMPVANKYDITEVLAACDEYFKETGRRVSFEYSLVHGVNDTDEDAQELIHLLRH--K 280
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
H+NLIP NP++ D+ RP +K+ L F LE I +IR+ G D ACGQLR +
Sbjct: 281 NCHINLIPVNPVKERDFVRPSRKSALNFKNKLEKSGINVTIRREMGSDIDGACGQLRRRY 340
>gi|422339618|ref|ZP_16420576.1| radical SAM enzyme, Cfr family [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370761|gb|EHG18140.1| radical SAM enzyme, Cfr family [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 358
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDGGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ QV +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + V
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LA+ + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAVSLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
VE+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 VEYQKRTKRRVTFEYILIDNFNISETDANALADFIHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|336171591|ref|YP_004578729.1| ribosomal RNA large subunit methyltransferase N [Lacinutrix sp.
5H-3-7-4]
gi|334726163|gb|AEH00301.1| Ribosomal RNA large subunit methyltransferase N [Lacinutrix sp.
5H-3-7-4]
Length = 346
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 156/324 (48%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W GA T + + R LQ+ + + + + ++DGTVK +K
Sbjct: 29 RGNQVYEWLWGKGAH-TFEDMTNISKETRQMLQD-NFVINHISVDTMQRSSDGTVKNAVK 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP E R TACVSSQVGC L C FCAT + RNL+ EI QV
Sbjct: 87 LHDGLIVESVLIPTE-----TRTTACVSSQVGCSLDCKFCATSRLKRMRNLNPDEIYDQV 141
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
+AI++ F ++N+VFMGMGEP++N +V++A + +G + I +ST GV
Sbjct: 142 VAIDKESKLYFNRPLSNIVFMGMGEPLMNYNNVIKAIDKITSPEGLGMSPKRIVVSTSGV 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGHH----- 248
P IKK+A ++ LA+ D+V + +L E L W
Sbjct: 202 PKMIKKMADDAVKFNLAVSLHSAIDEVRTEIMPFNKTFPLNDLKEALEYWYEKTQRKITY 261
Query: 249 ----------------------------VNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
+N+I +NPI+ +Q+ KA+ + ALES+
Sbjct: 262 EYVVWDGINDRREDINALVKFCKYVPCKINIIEYNPIDDGQFQQASSKAIDNYIQALESN 321
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
I ++R++RG D AACGQL N+
Sbjct: 322 NIVVNVRRSRGKDIDAACGQLANK 345
>gi|390943210|ref|YP_006406971.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
gi|390416638|gb|AFL84216.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
Length = 354
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 149/283 (52%), Gaps = 58/283 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +KL D++++E+V IP R+TACVSSQVGC L C+FCAT + R
Sbjct: 77 SSDGTIKNAVKLYDSKIVESVLIPT-----SKRITACVSSQVGCSLDCNFCATARLKRMR 131
Query: 139 NLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ- 193
NL+ EI QV+AI++ FK +TN+VFMGMGEP+LN +V+EA + +G
Sbjct: 132 NLNPDEIYDQVVAIKDEAEIYFKRPLTNIVFMGMGEPLLNYNNVIEAIDKITSPEGLGMA 191
Query: 194 -RMITISTVGVPNTIKKLASYKLQSTLAI---------RS-------------------- 223
R IT+STVG+P IKK+A ++ LAI RS
Sbjct: 192 PRRITLSTVGIPKMIKKMADDGVRFNLAISLHSAINETRSRLMPINNVNPIEDLADSLKY 251
Query: 224 ----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
G+ND HA LA+ VN+I +NPI+ ++++ +
Sbjct: 252 WYEKTKRKVTYEYVIWEGINDDEAHARALAKFCKII--PSKVNIIQYNPIDEGEFRQASQ 309
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
+AV + LE+ I +R++RG D AACGQL N+ + + L
Sbjct: 310 EAVEMYVRILENQGIIAKVRKSRGQDIDAACGQLANKNEVAEL 352
>gi|164687799|ref|ZP_02211827.1| hypothetical protein CLOBAR_01443 [Clostridium bartlettii DSM
16795]
gi|164603074|gb|EDQ96539.1| 23S rRNA m2A2503 methyltransferase [Clostridium bartlettii DSM
16795]
Length = 343
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 155/323 (47%), Gaps = 58/323 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTV-TAADGTVKL 86
P RG Q W + GA KT + +P+S R L++ + +G L + + D T K
Sbjct: 27 PFRGTQIYSW-IYKGA-KTFDDMKNIPKSLREKLEKVSY-IGNLETELVLKSKVDKTKKY 83
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L L D +IE+V + +D R+TAC+S+QVGC + C FCA+ G RNL EI+
Sbjct: 84 LFALNDGNIIESVMMDYDD-----RVTACISNQVGCRMGCKFCASTMEGLIRNLEPWEIL 138
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVP 204
Q++ I+E RV+N+V MG GEP+ N ++ + + +N + IG R IT+ST GV
Sbjct: 139 DQIIKIQEDTGKRVSNLVLMGSGEPLDNFENTKQFLKIVNDKNGLNIGYRHITLSTCGVI 198
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
+ +LA + LA+
Sbjct: 199 PKMYELADLNIPINLALSLHSPFDEKRAEIMPVAKAYKVKDLIKACQNYIDKTNRRVTFE 258
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND + E++ LL G HVNLIP N +E D++RP K + F ALE
Sbjct: 259 YSLIKGVNDSKAESDEISRLLK--GMLCHVNLIPINKVEERDFERPDKTYIYKFRDALEK 316
Query: 280 HKITTSIRQTRGLDASAACGQLR 302
+KI T++R + G D ACGQLR
Sbjct: 317 NKIPTTVRNSMGSDIGGACGQLR 339
>gi|421145204|ref|ZP_15605094.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488403|gb|EJG09268.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 358
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKG-PMRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDKGTIETVLLRHKDSKNREIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + V
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
VE+ A LA+ +H++ H +NLIP+N +EG ++ RP
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQF--DHVINLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|34763242|ref|ZP_00144204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27887095|gb|EAA24204.1| Radical SAM family enzyme [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 358
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKG-PMRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDGGTIETVLLRHKDSKNREIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + V
Sbjct: 135 YMRNLSVSEILNQIYIVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGVN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
VE+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 VEYQKQTKRRITFEYILIDNFNISETDANALADFIHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNIRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|146297083|ref|YP_001180854.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|205829688|sp|A4XL78.1|RLMN_CALS8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|145410659|gb|ABP67663.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 344
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 159/323 (49%), Gaps = 59/323 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKL 86
P R Q W + A+ +P R ++E + + L + + +DG ++K
Sbjct: 24 PFRANQIFEWLYKKNATDVNSFTN-IPTQLRKRIEEE-FILNSLRVVKY--ESDGESIKF 79
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L++L D IE+V +P + C+S+QVGC ++C+FCA+ GG RNLS+ E+V
Sbjct: 80 LLELVDGNAIESVFLPYKYGNA-----ICISTQVGCRMKCAFCASTIGGMIRNLSAGEMV 134
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVP 204
Q++ IE I K +++NVV MG GEP N+++V + +N + IG R ITISTVG+
Sbjct: 135 DQIVNIENITKKKISNVVLMGSGEPFDNIENVFKFIDIINSKEGKNIGARHITISTVGIV 194
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
+ I KL+ Y Q LAI
Sbjct: 195 DGIYKLSEYPKQVNLAISLHAPNNNLRNKLVPMNRKYSIEDILKAVDYYISKTNRRVTFE 254
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND +E A ELA++L G+ HVNLIP NP+ G ++++P K+ V F L
Sbjct: 255 YALIDGVNDSIECANELAKILS--GKLVHVNLIPVNPVNGRNFKKPPKERVKEFYNVLIL 312
Query: 280 HKITTSIRQTRGLDASAACGQLR 302
I +IR+ G +AACGQLR
Sbjct: 313 SGIQVTIRRELGSSIAAACGQLR 335
>gi|421525773|ref|ZP_15972383.1| florfenicol resistance protein [Fusobacterium nucleatum ChDC F128]
gi|402258342|gb|EJU08814.1| florfenicol resistance protein [Fusobacterium nucleatum ChDC F128]
Length = 358
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 156/293 (53%), Gaps = 58/293 (19%)
Query: 71 LPIFR----TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLR 125
+P+F V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++
Sbjct: 65 IPLFNLLKYQVSKIDKTEKFLFELEDGGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVK 124
Query: 126 CSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAH 182
CSFCATG+ G+ RNLS EI+ QV +E + + + N+VFMGMGEP+LN+ ++ ++
Sbjct: 125 CSFCATGQSGYMRNLSVSEILNQVYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLAKSL 184
Query: 183 RCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ---------- 229
++ + V I +R ITIST G+ + I+K+ K+ LAI + +N++
Sbjct: 185 SIISNENGVNISKRKITISTSGIVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKN 244
Query: 230 ----------VEH------------------------AVELAELLHEWGRGHHVNLIPFN 255
VE+ A LA+ +H++ H VNLIP+N
Sbjct: 245 FPLEDLSAVLVEYQKQTKRRITFEYILIDNFNISEADANALADFIHQF--DHVVNLIPYN 302
Query: 256 PIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
+EG ++ RP K + F L++ ++ ++RQ +G D ACGQLR +K
Sbjct: 303 EVEGVEHTRPSVKKIEKFYNYLKNVRRVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|302872121|ref|YP_003840757.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
OB47]
gi|302574980|gb|ADL42771.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor obsidiansis
OB47]
Length = 344
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 155/326 (47%), Gaps = 59/326 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKL 86
P R Q W + A+ + +P R + + + + L I + +DG ++K
Sbjct: 24 PFRASQIFEWLYKKNATDVMQFTN-LPLELREKIGDE-FLINSLQILQH--QSDGESIKF 79
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L +L D IE+V +P CVS+QVGC + C FCA+ GGF RNLS+ E+V
Sbjct: 80 LFELGDKNGIESVFLPYRYGNA-----ICVSTQVGCRMNCRFCASAIGGFVRNLSAGEMV 134
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVP 204
Q++ +E R+TNVV MG GEP N+++V + +N + IG R ITISTVG+
Sbjct: 135 DQIINVENFTGKRITNVVLMGSGEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIA 194
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
I +L + Q LAI
Sbjct: 195 EGIYRLCDFPKQVNLAISLHAPNNRLRDKLVPMNKKYPVEDIMKAVDYYIQKTNRRVTFE 254
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND +E A EL ++L G+ HVNLIP NP+E ++RP K+ + AF L S
Sbjct: 255 YALIDGVNDSIECAEELGQMLK--GKLVHVNLIPVNPVEEKGFRRPSKEKIKAFFETLRS 312
Query: 280 HKITTSIRQTRGLDASAACGQLRNEF 305
++I +IR+ G SAACGQLR +
Sbjct: 313 YQIQVTIRRELGSSISAACGQLRRRY 338
>gi|305664559|ref|YP_003860846.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
gi|88708576|gb|EAR00812.1| radical SAM enzyme, Cfr family protein [Maribacter sp. HTCC2170]
Length = 348
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 147/293 (50%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
L + + + + + + + DGT+K ++L D+ ++E+V IP + R TACVSSQV
Sbjct: 60 LLTSNFVINHIKVDQMQRSKDGTIKNAVRLHDDLVVESVLIPTK-----TRTTACVSSQV 114
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C FCAT + RNL+ EI QV+AI+ F ++N+VFMGMGEP++N
Sbjct: 115 GCSLDCKFCATARLKRMRNLNPDEIFDQVVAIDNESRLYFNRPLSNIVFMGMGEPLMNYN 174
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+VL+A + +G + IT+ST GVP I+K+A +++ LA+ D++ ++
Sbjct: 175 NVLKAIDKITSPDGLGMSPKRITVSTSGVPKMIRKMADEQVKFKLAVSLHSAIDEIRTSI 234
Query: 235 ----------ELAELLHEWGRG---------------------------------HHVNL 251
+L E L W VNL
Sbjct: 235 MPFNATLTLADLREALQYWYSKTKSRITYEYVVWKGINDTLNDAEALVDFCRFAPSKVNL 294
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ D+Q+ KA+ + LE IT ++R++RG D AACGQL N+
Sbjct: 295 IEYNPIDDGDFQQANNKAIDMYVDTLERRGITVTVRRSRGKDIDAACGQLANK 347
>gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
Length = 378
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 137/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K ++ L D + +ETV IP D R T CVSSQVGC L C+FC+TG+ GF+R
Sbjct: 79 SSDGTIKFVMTLFDGQDVETVWIPERD-----RATLCVSSQVGCALECTFCSTGQQGFNR 133
Query: 139 NLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL+ EI+GQV + ++ VTNVV MGMGEP+LNL +V+ A + D
Sbjct: 134 NLNVAEIIGQVWRVNQLLGAYGKTGIKPVTNVVMMGMGEPLLNLNNVVPAMDLMMDDYGF 193
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV + KL Y ++ LA
Sbjct: 194 GLSKRRVTLSTSGVVPALDKLREQIDVMLAISLHAPNDELRNEIVPINKKYNIEQFLASS 253
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ VND ++ A ELA L + +NLIPFNP GSDY
Sbjct: 254 RKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELARTLKD--TPSKINLIPFNPFPGSDYG 311
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + FA L + T +R+TRG D AACGQL
Sbjct: 312 RSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACGQL 349
>gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
gi|417919763|ref|ZP_12563287.1| 23S rRNA m2A2503 methyltransferase [Streptococcus australis ATCC
700641]
gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
gi|342831740|gb|EGU66050.1| 23S rRNA m2A2503 methyltransferase [Streptococcus australis ATCC
700641]
Length = 362
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 148/282 (52%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGTVK L +L D LIETV + + L+ CV++QVGC + C+FCA+G R
Sbjct: 73 SADGTVKYLFELPDGMLIETVLM-----RQHYGLSVCVTTQVGCNIGCTFCASGLIKKQR 127
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+L+S EIV Q++ +++ F RV+++V MG+GEP N K+VL R +N D + I
Sbjct: 128 DLNSGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYKNVLSFVRTVNDDKGLAI 187
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
G R IT+ST G+ + I+ A+ +Q LA+ RS+
Sbjct: 188 GARHITVSTSGLAHKIRDFANEGVQVNLAVSLHAPNNDLRSSIMKINRAFPIEKLFAAIE 247
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND VE A+ELAELL + + +VNLIP+NP+ D Y R
Sbjct: 248 YYIETTNRRVTFEYIMLNEVNDGVEQALELAELLKKIKKLSYVNLIPYNPVSEHDQYSRS 307
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
++ V+AF L+ + + +RQ G D AACGQLR+ K
Sbjct: 308 PRERVMAFYDTLKKNGVNCVVRQEHGTDIDAACGQLRSNTMK 349
>gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans
2-40]
gi|123090598|sp|Q21KT6.1|RLMN_SACD2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans
2-40]
Length = 398
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/355 (34%), Positives = 164/355 (46%), Gaps = 69/355 (19%)
Query: 7 APAWPFLYPAAQVICFFFFTCPSRGRQRA----PWHVRAGASKTRRRPRPVPQSFRNDLQ 62
APA L +Q FF R RA W + G + + + + R+ L
Sbjct: 8 APAKVNLMGLSQAKLEAFFDSLGEKRFRATQVLKWIHQMGVTDFEQMTN-ISKPLRDKLS 66
Query: 63 EAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGC 122
+ V + ++DGT K LI++ +ETV IP D R T CVSSQVGC
Sbjct: 67 QVAEAVAP-EVVNQWDSSDGTRKFLIRVGGGNAVETVYIPDGD-----RGTLCVSSQVGC 120
Query: 123 PLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNL 175
L CSFCATGK GF+R+L++ EI+GQV + F + ++TNVV MGMGEP+LN
Sbjct: 121 SLDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGVGAQRKITNVVMMGMGEPLLNF 180
Query: 176 KSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASY-------------------- 213
+V+++ + D G +R +T+ST GV + KL Y
Sbjct: 181 DNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEYTDACLAISLHAPNNALRNEL 240
Query: 214 -----KLQSTLAIRSAG----------------------VNDQVEHAVELAELLHEWGRG 246
K + + SA VND+ EHA ELAELL +
Sbjct: 241 VPINKKYPIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDRPEHAHELAELLKDIPV- 299
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+NLIPFNP S+Y+R A+ F L TT++R TRG D AACGQL
Sbjct: 300 -KINLIPFNPFNLSNYKRVSNNALRRFQQILIDAGYTTTVRTTRGDDIDAACGQL 353
>gi|19703861|ref|NP_603423.1| florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|81590892|sp|Q8RFZ9.1|RLMN_FUSNN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|19714019|gb|AAL94722.1| Florfenicol resistance protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 358
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 153/283 (54%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDKTEKFLFELEDGGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ +E + + + N+VFMGMGEP+LN+ ++ +A ++ + +
Sbjct: 135 YMRNLSVSEILNQIYTVERRLRKKGENLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPINKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG+++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFIHQF--DHVVNLIPYNEVEGAEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKINKFYIYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|421291572|ref|ZP_15742312.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA56348]
gi|395894874|gb|EJH05851.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA56348]
Length = 344
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 144/282 (51%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGTVK L +L D LIETV + + L+ CV++QVGC + C+FCA+G R
Sbjct: 56 SADGTVKYLFELPDGMLIETVLM-----RQHYGLSVCVTTQVGCNIGCTFCASGLIKKQR 110
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+L++ EIV Q++ +++ F RV+++V MG+GEP N +VL R +N D + I
Sbjct: 111 DLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFFRTINDDKGMTI 170
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
G R IT+ST+G+ + I+ A +Q LA+ RS+
Sbjct: 171 GARHITVSTLGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIE 230
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND VE A+EL ELL + +VNLIP+NP+ D Y R
Sbjct: 231 YYIETTNRRVTFEYIMLNEVNDSVEQALELTELLKNIKKLSYVNLIPYNPVSEHDQYSRS 290
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K+ VLAF L+ + +RQ G D AACGQLR+ K
Sbjct: 291 PKERVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMK 332
>gi|289764771|ref|ZP_06524149.1| radical SAM family enzyme [Fusobacterium sp. D11]
gi|289716326|gb|EFD80338.1| radical SAM family enzyme [Fusobacterium sp. D11]
Length = 358
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
++ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 ISKIDRTEKFLFELEDKGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ IE + + + N+VFMGMGEP+LN+ ++ +A ++ + +
Sbjct: 135 YMRNLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|374596886|ref|ZP_09669890.1| 23S rRNA m(2)A-2503 methyltransferase [Gillisia limnaea DSM 15749]
gi|373871525|gb|EHQ03523.1| 23S rRNA m(2)A-2503 methyltransferase [Gillisia limnaea DSM 15749]
Length = 347
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 155/324 (47%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W GA + + R LQ+ + + + + ++DGT+K +K
Sbjct: 29 RGSQVYEWLWNKGAHSFEDMTN-ISKETRKMLQD-NFVINHIRVDLMQRSSDGTIKNAVK 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L DN +E+V IP P R TACVSSQVGC L C FCAT RNL+ EI QV
Sbjct: 87 LHDNLTVESVLIPT-----PKRTTACVSSQVGCSLDCKFCATATLKRMRNLNPDEIYDQV 141
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEA-HRCLNKD-VQIGQRMITISTVGV 203
+AI+ F ++N+VFMGMGEP++N +V++A + +KD + + + ITIST GV
Sbjct: 142 VAIDNESRLYFDKPLSNIVFMGMGEPLMNYNNVMKAVEKITSKDGLGMSPKRITISTSGV 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH------ 247
P IKKLA + + LA+ D++ + +L E L W
Sbjct: 202 PKMIKKLADDEAKIKLAVSLHSAIDEIRTQIMPFNATFPLQDLREALEYWYAKTKSRITY 261
Query: 248 ---------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ +Q+ +A + LE +
Sbjct: 262 EYIVWEGINDKPKDAEALVRFCKYVPCKVNLIEYNPIDDGQFQQASSQATHMYEKMLEQN 321
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
IT ++R++RG D AACGQL N+
Sbjct: 322 GITVTVRRSRGKDIDAACGQLANK 345
>gi|224370186|ref|YP_002604350.1| putative SAM-dependent methyltransferase [Desulfobacterium
autotrophicum HRM2]
gi|223692903|gb|ACN16186.1| putative SAM-dependent methyltransferase [Desulfobacterium
autotrophicum HRM2]
Length = 345
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 158/326 (48%), Gaps = 63/326 (19%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RG Q W ++R ++T + + R L+E +T+ + R+ + DGT KLL
Sbjct: 25 RGGQVFKWLYLRQ--AQTFDEMTDIGKDLRQRLKE-NFTLSAMVFDRSEISRDGTEKLLF 81
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
+L DN IE V IP +D T C+SSQ GC C FC T KGGF+RNL++ EI+GQ
Sbjct: 82 RLHDNAYIEAVLIPEKDH-----FTLCISSQAGCAQGCKFCLTAKGGFTRNLTTGEIIGQ 136
Query: 149 VLAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNKD---VQIGQRMITIST 200
+ + + R ++N+VFMGMGEP+ N +V+ A + +++ R IT+ST
Sbjct: 137 IRTAKTVLAKRKAQRPLSNIVFMGMGEPLANYDTVVRALSIMTDSDYGLKLSSRRITLST 196
Query: 201 VGVPNTIKKLAS---------------------------YKLQSTLA------------- 220
G+ I +L + Y + L
Sbjct: 197 CGLVPEILRLGNDTEVNLAVSLNATTDETRSMLMPINRRYPMHELLKACTNFQMKPRKKI 256
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I VND ++ A L LL VNLIPFN + SD++RP K+++LAF
Sbjct: 257 TFEYILIKNVNDTMDDAKRLITLLLPI--RAKVNLIPFNEHDQSDFKRPSKESILAFLQM 314
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L H +T +R+++G D SAACGQLR
Sbjct: 315 LLDHNLTAMVRKSKGDDISAACGQLR 340
>gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Lachnoanaerobaculum saburreum DSM
3986]
gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Lachnoanaerobaculum saburreum DSM
3986]
Length = 352
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 156/319 (48%), Gaps = 62/319 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAA-DGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ ++FR L+ + + RL + T+ D T K L L D +IE+V + E
Sbjct: 48 LSKAFREILK-SQVILTRLKMVEVFTSKIDDTRKYLFALSDGNIIESVRMKYEHGN---- 102
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
+ C+SSQVGC + C FCA+ G RNL++ E++ QV +I+ I RV+N+V MG GEP
Sbjct: 103 -SVCISSQVGCRMGCKFCASTLDGLVRNLTTAEMLDQVYSIQRILGERVSNIVVMGSGEP 161
Query: 172 MLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA--------- 220
+ N ++++ R ++ D + I QR IT+ST G+ IKKLA L TLA
Sbjct: 162 LDNYDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLHAPNDE 221
Query: 221 IRS------------------------------------AGVNDQVEHAVELAELLHEWG 244
IR AGVND +E A L L++ G
Sbjct: 222 IRKTIMPVANKYALKDIIAACDYYFKKTGRRVSYEYSLVAGVNDNMEEAKSLVRLVN--G 279
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
R H+NLIP NPI+ D+++ K + AF LE + +IR+ G D ACGQLR
Sbjct: 280 RNIHINLIPVNPIKERDFKQSDKLKIKAFRDFLEKKGVNATIRREMGRDIDGACGQLRRR 339
Query: 305 FQKSPLRIDSSNSSSESDI 323
F I+SSN S ++
Sbjct: 340 F------IESSNKSESLEV 352
>gi|440750150|ref|ZP_20929394.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
gi|436481191|gb|ELP37372.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
Length = 355
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 148/282 (52%), Gaps = 56/282 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +KL D +++E+V IP R+TACVSSQVGC L C+FCAT + R
Sbjct: 77 SSDGTIKNAVKLYDGKIVESVLIPT-----SKRITACVSSQVGCSLDCNFCATARLKRMR 131
Query: 139 NLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ- 193
NL+ EI QV+AI+E F +TN+VFMGMGEP+LN +V+EA + +G
Sbjct: 132 NLNPDEIYDQVVAIKEEAETYFNRPLTNIVFMGMGEPLLNYANVVEAIDKITSPEGLGMA 191
Query: 194 -RMITISTVGVPNTIKKLASYKLQSTLAI-----------RSAGVNDQVEHAVELAELLH 241
R IT+STVG+P IKK+A +++ LAI R +ND +LAE L
Sbjct: 192 ARRITLSTVGIPKMIKKMADDEVKFNLAISLHSAINETRSRLMPINDS-NPLEDLAEALK 250
Query: 242 EW--------------------GRGH-------------HVNLIPFNPIEGSDYQRPYKK 268
W H VN+I +NPI+ ++++ ++
Sbjct: 251 YWYQKTKRKVTYEYVIWDGINDDESHAKALAKFCKIIPSKVNIIQYNPIDEGEFRQASQE 310
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
AV + LE + I +R++RG D AACGQL N+ + + L
Sbjct: 311 AVDMYVRILEQNGIVAKVRKSRGQDIDAACGQLANKNEVAQL 352
>gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
Length = 336
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 151/303 (49%), Gaps = 55/303 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ ++ R L+E + I R V+ D TVK L LED +IE V I K
Sbjct: 41 ISKNLRAKLKEIAYISELKIIERRVSQIDDTVKYLFLLEDKNIIEGVAI-----KYKFGN 95
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TACVS+QVGC ++C FCA+ GG R+L + E+V QV+AI+ + +++N+V MG GEP
Sbjct: 96 TACVSTQVGCNMKCKFCASAIGGKVRDLKASEMVDQVMAIDSDY-GKISNIVLMGSGEPF 154
Query: 173 LNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
N V++ + +N ++IG+R ITISTVG+ I + A +LQ L+I
Sbjct: 155 DNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNEL 214
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
GVND+ EHA +L +LL G
Sbjct: 215 RNELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLK--GM 272
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
HVNLIP N ++ +++ + V+ F +E+ IT ++R+ G D AACGQLR ++
Sbjct: 273 LCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLRRKY 332
Query: 306 QKS 308
K
Sbjct: 333 LKE 335
>gi|421206211|ref|ZP_15663275.1| radical SAM superfamily protein [Streptococcus pneumoniae 2090008]
gi|421229413|ref|ZP_15686089.1| radical SAM superfamily protein [Streptococcus pneumoniae 2061376]
gi|421311514|ref|ZP_15762121.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA58981]
gi|395577291|gb|EJG37836.1| radical SAM superfamily protein [Streptococcus pneumoniae 2090008]
gi|395596917|gb|EJG57126.1| radical SAM superfamily protein [Streptococcus pneumoniae 2061376]
gi|395912092|gb|EJH22955.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA58981]
Length = 361
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 144/282 (51%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGTVK L +L D LIETV + + L+ CV++QVGC + C+FCA+G R
Sbjct: 73 SADGTVKYLFELPDGMLIETVLM-----RQHYGLSVCVTTQVGCNIGCTFCASGLIKKQR 127
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+L++ EIV Q++ +++ F RV+++V MG+GEP N +VL R +N D + I
Sbjct: 128 DLNNGEIVAQIMLVQKYFDERGQDERVSHIVVMGIGEPFDNYNNVLNFFRTINDDKGMTI 187
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
G R IT+ST+G+ + I+ A +Q LA+ RS+
Sbjct: 188 GARHITVSTLGLAHKIRDFADEGVQVNLAVSLHAPNNELRSSIMKINRAFPIEKLFAAIE 247
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND VE A+EL ELL + +VNLIP+NP+ D Y R
Sbjct: 248 YYIETTNRRVTFEYIMLNEVNDSVEQALELTELLKNIKKLSYVNLIPYNPVSEHDQYSRS 307
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K+ VLAF L+ + +RQ G D AACGQLR+ K
Sbjct: 308 PKERVLAFYDTLKKKGVNCVVRQEHGTDIDAACGQLRSNTMK 349
>gi|20807945|ref|NP_623116.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
tengcongensis MB4]
gi|81590646|sp|Q8R9T4.1|RLMN_THETN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
tengcongensis MB4]
Length = 342
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 55/304 (18%)
Query: 52 PVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ ++ R L+E + I R V+ D TVK L LED +IE V I K
Sbjct: 46 DISKNLRAKLKEIAYISELKIIERRVSQIDDTVKYLFLLEDKNIIEGVAI-----KYKFG 100
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
TACVS+QVGC ++C FCA+ GG R+L + E+V QV+AI+ + +++N+V MG GEP
Sbjct: 101 NTACVSTQVGCNMKCKFCASAIGGKVRDLKASEMVDQVMAIDSDY-GKISNIVLMGSGEP 159
Query: 172 MLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------- 222
N V++ + +N ++IG+R ITISTVG+ I + A +LQ L+I
Sbjct: 160 FDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNE 219
Query: 223 --------------------------------------SAGVNDQVEHAVELAELLHEWG 244
GVND+ EHA +L +LL G
Sbjct: 220 LRNELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLK--G 277
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
HVNLIP N ++ +++ + V+ F +E+ IT ++R+ G D AACGQLR +
Sbjct: 278 MLCHVNLIPINYVKEIGFRKSNNEKVMMFKKIIENAGITCTVRRELGSDIEAACGQLRRK 337
Query: 305 FQKS 308
+ K
Sbjct: 338 YLKE 341
>gi|399926211|ref|ZP_10783569.1| ribosomal RNA large subunit methyltransferase N [Myroides
injenensis M09-0166]
Length = 346
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 149/294 (50%), Gaps = 54/294 (18%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
++ EA + + + + + DGT+K +KL D ++E+V IP E R TACVSSQ
Sbjct: 57 EMLEANFVINHIKVDSMQVSTDGTIKNGVKLHDGLIVESVLIPTE-----TRTTACVSSQ 111
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK----HRVTNVVFMGMGEPMLNL 175
VGC L C FCAT + RNL+ EI QVL I++ + H ++N+VFMGMGEP++N
Sbjct: 112 VGCSLDCEFCATARLKRMRNLNPDEIYDQVLTIDQQSRKNHGHPLSNIVFMGMGEPLMNY 171
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHA 233
+V A + + +G + IT+ST G+P IKKLA ++ LA+ +++ +
Sbjct: 172 NNVQAAIDKITSEEGLGMSPKRITVSTSGIPKMIKKLADDGVKYKLAVSLHSAIEEIRNK 231
Query: 234 V----------ELAELLHEWGRGH---------------------------------HVN 250
+ +L E L W VN
Sbjct: 232 IMPFTKSFPLTDLREALQYWYSKTKSRVTYEYVIWGGINDDKASINALVKFCKYVPCKVN 291
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
LI +NPI+ ++Q+ ++A A+ ALE++ IT +R++RG D AACGQL N+
Sbjct: 292 LIEYNPIDDGEFQQASEEATNAYIKALEANDITVVVRRSRGKDIDAACGQLANK 345
>gi|357051317|ref|ZP_09112511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
gi|355380139|gb|EHG27284.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
Length = 354
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 158/308 (51%), Gaps = 59/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+S L E+ + + L A+DGTVK L +L DN +IETV + E G +
Sbjct: 48 LPKSLVTKLNES-FVINPLKQIVLQEASDGTVKYLFQLPDNHMIETV--LMRQEYG---M 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVVFMG 167
+ CV++QVGC + C+FCA+G R+L++ EIV Q++ ++ F RV++VV MG
Sbjct: 102 SVCVTTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDELNAGERVSHVVVMG 161
Query: 168 MGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
+GEP N ++V++ + +N K + IG R IT+ST G+ + IK+ A LQ LAI
Sbjct: 162 IGEPFDNYENVMQFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAISLHA 221
Query: 222 -------------RS----------------------------AGVNDQVEHAVELAELL 240
RS VND+ EHA +L ELL
Sbjct: 222 PNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTNRRITFEYIMLDHVNDRPEHARQLVELL 281
Query: 241 HEWGRGHHVNLIPFNPIEGSD-YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
+ +VNLIP+NP+ D Y R K+ VLAF L+ + I IR+ G D AACG
Sbjct: 282 KNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKNGINCVIRKEHGTDIDAACG 341
Query: 300 QLRNEFQK 307
QLR++ K
Sbjct: 342 QLRSKQMK 349
>gi|154505950|ref|ZP_02042688.1| hypothetical protein RUMGNA_03492 [Ruminococcus gnavus ATCC 29149]
gi|153793968|gb|EDN76388.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus gnavus ATCC 29149]
Length = 346
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 157/330 (47%), Gaps = 63/330 (19%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIF---RTVTAADGTVK 85
R +Q W HV+ S + ++ R L EA + + LP+ R ++ D T K
Sbjct: 26 RAKQIYEWLHVKLADS--FEEMTNLSKALREKL-EAEYEI--LPVKMLERQISKIDATNK 80
Query: 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEI 145
L +L D ++E+V + + + C+SSQVGC + C FCA+ GG RNLS E+
Sbjct: 81 FLFQLSDGNVVESVLMRYKHGN-----SVCISSQVGCRMGCRFCASTIGGLERNLSPSEM 135
Query: 146 VGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGV 203
+GQ+ I++I RV+NVV MG GEPM N ++ L R L + + I QR +T+ST G+
Sbjct: 136 LGQIYQIQKITGERVSNVVVMGTGEPMDNYENFLTFVRMLTDEHGLHISQRNLTVSTCGI 195
Query: 204 PNTIKKLASYKLQSTLAIR----------------------------------------- 222
I++LA LQ TLA+
Sbjct: 196 VPKIRELAMEHLQITLALSLHGSTQEKRKQLMPVANKYDLQEVLKACDFYFQETGRRVTF 255
Query: 223 ----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
GVND E A EL +L R H+NLIP NPI+ D+Q+P +K L F LE
Sbjct: 256 EYSLVHGVNDTQEDAEELIGILK--SRNCHLNLIPVNPIKERDFQQPSRKNALNFKNKLE 313
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQKS 308
I +IR+ G D ACGQLR + K+
Sbjct: 314 KSGINVTIRREMGADIDGACGQLRRRYVKT 343
>gi|444920988|ref|ZP_21240826.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507724|gb|ELV07898.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 371
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 164/368 (44%), Gaps = 70/368 (19%)
Query: 10 WPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVG 69
+ YPA +C P R Q W GAS + + R L+ V
Sbjct: 14 YGLTYPAMLELCEEIGEKPYRAMQIMKWVYHKGASSIDDMT-DISKKTREKLKSR--LVL 70
Query: 70 RLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSF 128
LP + + DGT K LI+LE IE V IP ED++G T CVSSQVGC L CSF
Sbjct: 71 ELPKVLLDKPSNDGTHKWLIQLESGNAIEMVFIP-EDDRG----TLCVSSQVGCALECSF 125
Query: 129 CATGKGGFSRNLSSHEIVGQVLAIEEIF-----------KHRVTNVVFMGMGEPMLNLKS 177
C+T + GF+RNLS+ EIVGQV+ + + RVTNVV MGMGEP+LN +
Sbjct: 126 CSTARQGFNRNLSTAEIVGQVMLAKRLLGEYEGDVQQSQNRRVTNVVLMGMGEPLLNFTN 185
Query: 178 VLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKL------------------------- 210
V +A + D G +R +T+ST GV + +L
Sbjct: 186 VTQAIDIMLNDYGFGLSKRRVTLSTSGVVPALYRLKEVSDVSLAISLHAPYDTLRNELVP 245
Query: 211 ---------------------ASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHV 249
++Y+ + + VND+ E A LA+L+ + V
Sbjct: 246 INKKYPLAELLEACKAYITESSAYRKITWEYVMLKDVNDREEDAFALAKLIKDI--PGKV 303
Query: 250 NLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
NLIPFNP S Y+ + F L+ + T++R+TRG D AACGQL
Sbjct: 304 NLIPFNPFPNSGYECSSMNRINRFREILQRQGVVTTVRKTRGEDIDAACGQLAGRVNDRT 363
Query: 310 LRIDSSNS 317
R ++NS
Sbjct: 364 KRTKTTNS 371
>gi|210617186|ref|ZP_03291453.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
gi|210149461|gb|EEA80470.1| hypothetical protein CLONEX_03675 [Clostridium nexile DSM 1787]
Length = 345
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 154/325 (47%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLL 87
R +Q W HV+ S + ++ R L +A + + + + R + DGT K L
Sbjct: 27 RAKQVYEWLHVKLADS--FEEMTNLSKALREKL-DAAYEIAPVKMLERQESKLDGTNKFL 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
L+D ++E+V + + + C+SSQVGC + C FCA+ GG RNL + E++G
Sbjct: 84 FCLQDGHVVESVLMKYKHGN-----SVCISSQVGCRMGCKFCASTIGGLERNLKASEMLG 138
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPN 205
Q+ I++I RV+NVV MG GEPM N + L+ L + + I QR IT+ST G+
Sbjct: 139 QIYQIQKISGERVSNVVVMGTGEPMDNYDNFLKFIHILTDEHGLHISQRNITVSTCGIVP 198
Query: 206 TIKKLASYKLQSTLAIR------------------------------------------- 222
+K+LA KLQ TLA+
Sbjct: 199 NMKRLAEEKLQITLALSLHGSTQEKRKVLMPVANKYELSEVLAACDYYFEKTGRRVTFEY 258
Query: 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
GVND+ E A EL +L R H+NLIP NPI+ +++P KK + F LE
Sbjct: 259 SLVHGVNDKEEDAAELIHILKH--RNCHLNLIPVNPIKERTFEKPSKKNAMNFKNKLEKS 316
Query: 281 KITTSIRQTRGLDASAACGQLRNEF 305
I +IR+ G D ACGQLR +
Sbjct: 317 GINVTIRREMGSDIDGACGQLRRRY 341
>gi|429749151|ref|ZP_19282291.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429168920|gb|EKY10721.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 357
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 157/326 (48%), Gaps = 56/326 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + G +P++ R ++ EA + + + + + DGT+K ++
Sbjct: 37 RGNQVYEWLWQKGVHSFEAMT-SLPKATR-EMLEAEFVINHIKVDVMQRSDDGTIKNAVR 94
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL + EI QV
Sbjct: 95 LHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLADEIYDQV 149
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
I+E F +TN+VFMGMGEP++N +VL+A + +G + IT+ST GV
Sbjct: 150 RVIDEQSRAFFGRPLTNIVFMGMGEPLMNYNNVLKAIDKITSADGLGMSPKRITVSTSGV 209
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
P IKK+A +++ LA+ V ++ EL E L W +
Sbjct: 210 PKLIKKMADDQVKFKLAVSLHSAIKSVRTSIMPFNEQFPLEELREALQYWYQKTRNRITY 269
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ D+Q+ +A+ + LE
Sbjct: 270 EYVVWKGINDQRKDVEALIKFCKFAPSKVNLIEYNPIDDGDFQQAAPEALQLYQQLLEEA 329
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQ 306
IT ++R +RG D AACGQL N+ Q
Sbjct: 330 GITVTVRHSRGKDIDAACGQLANKGQ 355
>gi|317151954|ref|YP_004120002.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
gi|316942205|gb|ADU61256.1| radical SAM enzyme, Cfr family [Desulfovibrio aespoeensis Aspo-2]
Length = 344
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 143/280 (51%), Gaps = 57/280 (20%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R + DGT+K L++L D +L+ETV IP++D R + C+S+QVGC + C+FC+TG
Sbjct: 67 VARVQQSEDGTIKFLLRLGDGKLVETVLIPMQD-----RYSQCLSTQVGCAMGCTFCSTG 121
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCL--N 186
+ GF RN++ EI+GQVL + + R + N+VFMGMGEP+LNL ++L+ L
Sbjct: 122 QLGFERNMTYGEILGQVLVGRQYLEDRGMNPLKNLVFMGMGEPLLNLDTLLKVLNDLPCE 181
Query: 187 KDVQIGQRMITISTVGVPNTIK---------------------------KLASYKLQSTL 219
+ + + R +STVG P ++ K A L +
Sbjct: 182 RGLSLSWRRSMVSTVGFPEQLRILGEMEVALPAISLHAPTQELRARIMPKAARVHLDDLM 241
Query: 220 AIRSA-----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
A A GVND +EHA +LA L+ + +NLI +N EG Y
Sbjct: 242 AALRAYPMRPRERITFEYLLLKGVNDSLEHADQLARLIDR--KKGKINLIAYNATEGLPY 299
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ P + V AF L H +T IR++ G D AACGQL+
Sbjct: 300 EAPDRAQVEAFEKRLWDHGLTAFIRRSMGADIKAACGQLK 339
>gi|383784040|ref|YP_005468608.1| radical SAM family protein [Leptospirillum ferrooxidans C2-3]
gi|383082951|dbj|BAM06478.1| putative radical SAM family protein [Leptospirillum ferrooxidans
C2-3]
Length = 372
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 144/294 (48%), Gaps = 72/294 (24%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ + + DGT K+L +L+D ++IE+V IP D R T C+SSQVGC + C FC T
Sbjct: 66 VLNVLESKDGTKKILFQLKDEQMIESVIIPRGD-----RATLCISSQVGCGIGCKFCRTA 120
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFK------------------HRVTNVVFMGMGEPMLN 174
+ G RNL+ EIVGQV+ +I K +RV ++VFMGMGEP+ N
Sbjct: 121 EMGLIRNLTMGEIVGQVIMANKILKENPIKDGSTSNLEDQPLLNRVNHIVFMGMGEPLAN 180
Query: 175 LKSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLAS-------------------- 212
L V+ + R L +G R IT+ST G+P+ I +L
Sbjct: 181 LDQVINSIRTLTSSDGLGMSPRRITVSTSGLPSKIIELGQSGIPVNLAVSLTAADDPTRE 240
Query: 213 --------YKLQSTL-AIRS----------------AGVNDQVEHAVELAELLHEWGRGH 247
Y +++ L AIR +GVND+ E A +LA LL +
Sbjct: 241 KLMPINRHYPIRAILDAIRQLPLKKRQRVTFEYVLLSGVNDRPEDAKKLARLLAPF--KS 298
Query: 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
VNLIPFNP EGS + P K VL F L + T+IRQ+RG D ACGQL
Sbjct: 299 KVNLIPFNPYEGSPFVSPSKDDVLLFQKILLEKMVATTIRQSRGDDILGACGQL 352
>gi|331005925|ref|ZP_08329273.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
IMCC1989]
gi|330420281|gb|EGG94599.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
IMCC1989]
Length = 403
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 142/285 (49%), Gaps = 63/285 (22%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ + + + DGT K LIK+ + ++ETV IP D R T CVSSQVGC L CSFCATG
Sbjct: 84 VIKQLDSVDGTRKFLIKVSGDNVVETVFIPDGD-----RGTLCVSSQVGCSLDCSFCATG 138
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
K GF+R+L++ EI+GQV + + VTNVV MGMGEP+LN +V+++ +
Sbjct: 139 KQGFNRDLTAAEIIGQVWIAAKSYGQLDPKADRTVTNVVMMGMGEPLLNFDNVVDSMNLM 198
Query: 186 NKDVQIG--QRMITISTVGVPNTIKKLASY-------------------------KLQST 218
D G +R +T+ST GV + +L + K
Sbjct: 199 MDDNAYGLSKRRVTLSTSGVVPALDRLGEHCDVSLAVSLHAPNDALRNELVPINKKYPIA 258
Query: 219 LAIRSAG----------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+ + SA VND+ HA ELAELL E +NLIPFNP
Sbjct: 259 VLLASAKRYIDGLPDNRRKMTIEYTLIDQVNDRPHHAYELAELLREIPV--KINLIPFNP 316
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ +Y+R A+ F L + TT++R TRG D AACGQL
Sbjct: 317 FDLVNYKRVSNNALRNFQNILINEGFTTTVRTTRGDDIDAACGQL 361
>gi|336432653|ref|ZP_08612484.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336017935|gb|EGN47688.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 346
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 157/330 (47%), Gaps = 63/330 (19%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIF---RTVTAADGTVK 85
R +Q W HV+ S + ++ R L EA + + LP+ R ++ D T K
Sbjct: 26 RAKQIYEWLHVKLADS--FEEMTNLSKALREKL-EAEYEI--LPVKMLERQISKIDATNK 80
Query: 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEI 145
L +L D ++E+V + + + C+SSQVGC + C FCA+ GG RNLS E+
Sbjct: 81 FLFQLSDGNVVESVLMRYKHGN-----SVCISSQVGCRMGCRFCASTIGGLERNLSPSEM 135
Query: 146 VGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGV 203
+GQ+ I++I RV+NVV MG GEPM N ++ L R L + + I QR +T+ST G+
Sbjct: 136 LGQIYQIQKITGERVSNVVVMGTGEPMDNYENFLTFVRMLTDEHGLHISQRNLTVSTCGI 195
Query: 204 PNTIKKLASYKLQSTLAIR----------------------------------------- 222
I++LA LQ TLA+
Sbjct: 196 VPKIRELAMEHLQITLALSLHGSTQEKRKQLMPVANKYDLQEVLKACDFYFQETGRRVTF 255
Query: 223 ----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
GVND E A EL +L R H+NLIP NPI+ D+Q+P +K L F LE
Sbjct: 256 EYSLVHGVNDTQEDAEELIGILK--SRNCHLNLIPVNPIKERDFQQPSRKNALNFKNKLE 313
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQKS 308
I +IR+ G D ACGQLR + K+
Sbjct: 314 KSGINVTIRREMGADIDGACGQLRRRYVKT 343
>gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
Length = 360
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 158/308 (51%), Gaps = 59/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+S L E+ + + L A+DGTVK L +L DN +IETV + E G +
Sbjct: 54 LPKSLVTKLNES-FVINPLKQIVLQEASDGTVKYLFQLPDNHMIETV--LMRQEYG---M 107
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVVFMG 167
+ CV++QVGC + C+FCA+G R+L++ EIV Q++ ++ F RV++VV MG
Sbjct: 108 SVCVTTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDELNAGERVSHVVVMG 167
Query: 168 MGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
+GEP N ++V++ + +N K + IG R IT+ST G+ + IK+ A LQ LAI
Sbjct: 168 IGEPFDNYENVMQFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAISLHA 227
Query: 222 -------------RS----------------------------AGVNDQVEHAVELAELL 240
RS VND+ EHA +L ELL
Sbjct: 228 PNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTNRRITFEYIMLDHVNDRPEHARQLVELL 287
Query: 241 HEWGRGHHVNLIPFNPIEGSD-YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
+ +VNLIP+NP+ D Y R K+ VLAF L+ + I IR+ G D AACG
Sbjct: 288 KNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKNGINCVIRKEHGTDIDAACG 347
Query: 300 QLRNEFQK 307
QLR++ K
Sbjct: 348 QLRSKQMK 355
>gi|238916657|ref|YP_002930174.1| hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
gi|259491988|sp|C4Z523.1|RLMN_EUBE2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|238872017|gb|ACR71727.1| Hypothetical protein EUBELI_00719 [Eubacterium eligens ATCC 27750]
Length = 350
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 150/311 (48%), Gaps = 57/311 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + R L+E V P+ + DGT K L +L D +E+V +
Sbjct: 47 LSNALRQKLKETSEYVCLEPVRVQHSKLDGTEKYLFRLSDGNYVESVLMKYHHGN----- 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+SSQVGC + C FCA+ G R+L E++ Q+ I++I RV+NVV MG GEPM
Sbjct: 102 SVCISSQVGCRMGCRFCASTLNGKVRDLRPSEMLDQIYRIQKITGERVSNVVVMGSGEPM 161
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
N ++++ LN + + I QR IT+S+ G+ +K+LA KLQ TLAI
Sbjct: 162 DNYDNLIKFIELLNDERGLNISQRNITVSSCGIVPKLKELADLKLQITLAISLHAPNDEL 221
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
GVND +E A +L EL+ G
Sbjct: 222 RKTMMPIANKYSIEEIMDVCRYYIECTGRRISFEYSLVKGVNDSMECAKQLIELVK--GM 279
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
H+NLIP NPI+ DY++ K+ V AF LE + I +IR+ G D ACGQLRN++
Sbjct: 280 NCHINLIPVNPIKERDYKQTGKEEVYAFKNKLEKNGINVTIRREMGRDIDGACGQLRNKY 339
Query: 306 QKSPLRIDSSN 316
+ ID S+
Sbjct: 340 MED---IDESD 347
>gi|407695029|ref|YP_006819817.1| ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
gi|407252367|gb|AFT69474.1| Ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
Length = 380
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 139/287 (48%), Gaps = 63/287 (21%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGT K + + + +ETV IP R T CVSSQVGC + C FC+TGK GF R+L
Sbjct: 79 DGTRKWVFEADGGGAVETVFIP-----DGRRGTLCVSSQVGCAVDCGFCSTGKQGFQRDL 133
Query: 141 SSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QI 191
+S EI+GQV F +H +TNVV MGMGEPMLN +VL A R + D+ I
Sbjct: 134 TSAEIIGQVWQAGRAFGPRRNLGEHPITNVVMMGMGEPMLNYDAVLTAMRIMKDDLGYGI 193
Query: 192 GQRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA---- 220
G++ IT+ST GV I +L+ Y L +A
Sbjct: 194 GKKRITLSTSGVVPKIDQLSRDLDVALAVSLHAPNDELRNELVPLNRKYPLAELMAACKR 253
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ VND+ EHA +L +LL+ G VNLIPFNP + Y+R
Sbjct: 254 YSDNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLN--GIPVKVNLIPFNPFPHAGYER 311
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
KK +L F L H + T++R TRG D AACGQL Q R
Sbjct: 312 SRKKDILEFHKFLNDHGLLTTVRTTRGDDIDAACGQLVGTVQDRTRR 358
>gi|332305581|ref|YP_004433432.1| radical SAM family protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410646698|ref|ZP_11357148.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola sp. 4H-3-7+YE-5]
gi|410133870|dbj|GAC05547.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
Length = 380
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 153/330 (46%), Gaps = 65/330 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W +AG S + + ++ R L+ V I A DGT+K
Sbjct: 33 PFRADQVMKWIYQAGVSDFDQMTN-LNKALREKLK-MQCEVKAPEIAYQQGATDGTIKFA 90
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++LE + +ETV IP D R T CVSSQVGC L C+FC+T + GF+RNLS EI+G
Sbjct: 91 LRLEGGQEVETVWIPDAD-----RATLCVSSQVGCALECTFCSTAQQGFNRNLSVAEIIG 145
Query: 148 QVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + K +TNVV MGMGEP+LNLK+V+ A + D+ G +R +T+
Sbjct: 146 QVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTL 205
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + L Y +Q LA
Sbjct: 206 STSGVVPALDMLGDQIDVALAISLHAPDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNA 265
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A LA++L + +NLIPFNP GS Y R +
Sbjct: 266 NQGKVTVEYVMLNGINDSTDQAHALAKVLAD--TPSKINLIPFNPYPGSPYSRSSNSRID 323
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
FA L S+ + +R+TRG D AACGQL
Sbjct: 324 RFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|419720356|ref|ZP_14247592.1| 23S rRNA m2A2503 methyltransferase [Lachnoanaerobaculum saburreum
F0468]
gi|383303456|gb|EIC94905.1| 23S rRNA m2A2503 methyltransferase [Lachnoanaerobaculum saburreum
F0468]
Length = 351
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 154/319 (48%), Gaps = 62/319 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAA-DGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + FR L+ + + RL T+ D T K L L D +IE+V + E
Sbjct: 47 LSKEFRETLK-SQVILTRLKTVEVFTSKIDDTRKYLFALSDGNIIESVRMKYEHGN---- 101
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
+ C+SSQVGC + C FCA+ G RNL++ E++ QV +I+ I RV+N+V MG GEP
Sbjct: 102 -SVCISSQVGCRMGCKFCASTLDGLVRNLTTAEMLDQVYSIQRILGERVSNIVVMGSGEP 160
Query: 172 MLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA--------- 220
+ N ++++ R ++ D + I QR IT+ST G+ IKKLA L TLA
Sbjct: 161 LDNYDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLHAPNDE 220
Query: 221 IRS------------------------------------AGVNDQVEHAVELAELLHEWG 244
IR AGVND +E A L L++ G
Sbjct: 221 IRKTIMPVANKYALKDIIAACDYYFKKTGRRVSYEYSLVAGVNDNMEEAKSLVRLVN--G 278
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
R H+NLIP NPI+ D+++ K + AF LE + +IR+ G D ACGQLR
Sbjct: 279 RNVHINLIPVNPIKERDFKQSDKLKIKAFRDFLEKKGVNATIRREMGRDIDGACGQLRRR 338
Query: 305 FQKSPLRIDSSNSSSESDI 323
F I+SSN S ++
Sbjct: 339 F------IESSNKSESLEV 351
>gi|336417780|ref|ZP_08598065.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 11_3_2]
gi|336164727|gb|EGN67629.1| radical SAM enzyme, Cfr family [Fusobacterium sp. 11_3_2]
Length = 358
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
++ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 ISKIDRTEKFLFELEDKGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ IE + + + N+VFMGMGEP+LN+ ++ ++ ++ + +
Sbjct: 135 YMRNLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|330752186|emb|CBL87145.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteriia
bacterium]
Length = 349
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 147/297 (49%), Gaps = 55/297 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
L A + L + + DGT+K +KL D +E+V IP E R+TACVSSQV
Sbjct: 58 LLNANFNFNLLEVDLMQRSKDGTIKNAVKLHDGAFVESVLIPTEK-----RITACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----EEIFKHRVTNVVFMGMGEPMLNLK 176
GC L C+FCAT RNL EI QV+ I +E F +TN+VFMGMGEP+LN
Sbjct: 113 GCSLDCTFCATASLKRMRNLGPDEIYDQVVVIHNQGKEYFGRPLTNIVFMGMGEPLLNYN 172
Query: 177 SVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQ----- 229
+VL A + K + + R IT+ST+GVP IK++A ++ LAI ++
Sbjct: 173 NVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISLHSAIEEKRAKL 232
Query: 230 --VEHA----VELAELLHEW----GRG-----------------------------HHVN 250
+ H V+L E L W GRG VN
Sbjct: 233 MPLAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALAKFCGAIPTKVN 292
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
+I +NPI+ Y + ++AV + LES I T+IR +RG D AACGQL N+ ++
Sbjct: 293 IIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACGQLANKVEE 349
>gi|239618306|ref|YP_002941628.1| ribosomal RNA large subunit methyltransferase N [Kosmotoga olearia
TBF 19.5.1]
gi|239507137|gb|ACR80624.1| radical SAM enzyme, Cfr family [Kosmotoga olearia TBF 19.5.1]
Length = 343
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 144/297 (48%), Gaps = 55/297 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ FR L + R+++ DGT K L KL D IE+V + + P
Sbjct: 46 LPKDFRKFLSGTFRYPEMTIVRRSLSKIDGTEKFLWKLHDGEFIESVIL-----RHPDHT 100
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T C+S+QVGC L C FCATG GF RNLS EIVGQV+ +E+ VTN+VFMGMGEP
Sbjct: 101 TFCISTQVGCQLGCIFCATGMSGFKRNLSVSEIVGQVIFMEKSMGKNVTNIVFMGMGEPF 160
Query: 173 LNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTIKKLAS------------------ 212
LN +V ++ L++ +G R TIST G+P I +LA
Sbjct: 161 LNTDNVFKSIEILHEPAGRNLGIRHFTISTAGIPEGIIRLADSGMDVRLSLSLHAATDEK 220
Query: 213 ----------YKLQSTLA-----------------IRSAGVNDQVEHAVELAELLHEWGR 245
Y +Q +A I G+ND +E A +LA+L
Sbjct: 221 RSMLMPINKRYNIQQLMASLEYYQRKTNRRITIEYILIDGINDSIEDAKQLAKLFKHL-- 278
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VN+I NP+ + +RP ++ V FA L+ H I +IR +G D AACGQLR
Sbjct: 279 KIFVNIIAINPVVPT-LKRPSREKVERFAIELKKHGIEAAIRTEKGSDIDAACGQLR 334
>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
Length = 380
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 160/338 (47%), Gaps = 68/338 (20%)
Query: 23 FFFTCPS---RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FF T R +Q W + + + + V ++ R L E G ++ +
Sbjct: 20 FFLTMGEKKFRAQQVLKW-IHHHQADSFEQMTDVGKALRQKLSEVAEIRGPKVTHESI-S 77
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT K + ++++ +ETV IP R T CVSSQVGC + CSFC+TGK GF R+
Sbjct: 78 RDGTRKWVFEMDNGGAVETVFIP-----DGRRGTLCVSSQVGCAVDCSFCSTGKQGFQRD 132
Query: 140 LSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--Q 190
++S EI+GQV F +H +TNVV MGMGEP+LN VL A R + D+
Sbjct: 133 MTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYG 192
Query: 191 IGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA--- 220
IG++ IT+ST GV + +L+ Y L+ +A
Sbjct: 193 IGKKRITVSTSGVIPKMNQLSEDLDVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAACK 252
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ VND+ EHA +L +LL+ G VNLIPFNP + Y+
Sbjct: 253 SYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLN--GIPVKVNLIPFNPFPHAGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R K +L F L + + T++R TRG D AACGQL
Sbjct: 311 RSRKNDILEFHKYLNDNGVMTTVRTTRGDDIDAACGQL 348
>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
gi|123050394|sp|Q0VND7.1|RLMN_ALCBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
borkumensis SK2]
Length = 381
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 160/338 (47%), Gaps = 68/338 (20%)
Query: 23 FFFTCPS---RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FF T R +Q W + + + + V ++ R L E G ++ +
Sbjct: 20 FFLTMGEKKFRAQQVLKW-IHHHQADSFEQMTDVGKALRQKLSEVAEIRGPKVTHESI-S 77
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT K + ++++ +ETV IP R T CVSSQVGC + CSFC+TGK GF R+
Sbjct: 78 RDGTRKWVFEMDNGGAVETVFIP-----DGRRGTLCVSSQVGCAVDCSFCSTGKQGFQRD 132
Query: 140 LSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--Q 190
++S EI+GQV F +H +TNVV MGMGEP+LN VL A R + D+
Sbjct: 133 MTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYG 192
Query: 191 IGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA--- 220
IG++ IT+ST GV + +L+ Y L+ +A
Sbjct: 193 IGKKRITVSTSGVIPKMNQLSEDLDVSLAVSLHAPNDELRNQLVPLNRKYPLKDLMAACK 252
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ VND+ EHA +L +LL+ G VNLIPFNP + Y+
Sbjct: 253 RYSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLN--GIPVKVNLIPFNPFPHAGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R K +L F L + + T++R TRG D AACGQL
Sbjct: 311 RSRKNDILEFHKYLNDNGVMTTVRTTRGDDIDAACGQL 348
>gi|410641928|ref|ZP_11352447.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
gi|410138830|dbj|GAC10634.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
Length = 380
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 153/330 (46%), Gaps = 65/330 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W +AG S + + ++ R L+ V I A DGT+K
Sbjct: 33 PFRADQVMKWIYQAGESDFDQMTN-LNKALREKLK-MQCEVKAPEIAYQQGATDGTIKFA 90
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++LE + +ETV IP D R T CVSSQVGC L C+FC+T + GF+RNLS EI+G
Sbjct: 91 LRLEGGQEVETVWIPDAD-----RATLCVSSQVGCALECTFCSTAQQGFNRNLSVAEIIG 145
Query: 148 QVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + K +TNVV MGMGEP+LNLK+V+ A + D+ G +R +T+
Sbjct: 146 QVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTL 205
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + L Y +Q LA
Sbjct: 206 STSGVVPALDMLGDQIDVALAISLHAPDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNA 265
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A LA++L + +NLIPFNP GS Y R +
Sbjct: 266 NQGKVTVEYVMLNGINDSTDQAHALAKVLAD--TPSKINLIPFNPYPGSPYSRSSNSRID 323
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
FA L S+ + +R+TRG D AACGQL
Sbjct: 324 RFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|452853090|ref|YP_007494774.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
piezophilus]
gi|451896744|emb|CCH49623.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
piezophilus]
Length = 344
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 150/285 (52%), Gaps = 57/285 (20%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
I R + DGT+KLL++L D +LIETV IP++D R + C+S+QVGC + C+FC TG
Sbjct: 67 IARVQQSKDGTIKLLLRLGDGKLIETVLIPMQD-----RYSQCLSTQVGCAMACTFCNTG 121
Query: 133 KGGFSRNLSSHEIVGQVLA----IEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--N 186
GF RNLS EI+GQ+L +E+ + + N+VFMGMGEP+LNL+++L+ L
Sbjct: 122 LLGFERNLSYGEIMGQILVGRQYLEDQNMNPLKNLVFMGMGEPLLNLETLLKVLNDLPCE 181
Query: 187 KDVQIGQRMITISTVGVPNTIKKLA--------------SYKLQSTLAIRSA-------- 224
+ + + R +STVG P+ +K L + +L++ + ++A
Sbjct: 182 RGLSLSWRRSMVSTVGFPDKLKILGKLEVALPAISLHAPTQELRAKIMPKAAKVHLNDLM 241
Query: 225 ----------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
VND +E A +LA L+ R +NLI +N +EG Y
Sbjct: 242 AALKTYPMRPRERITFEYLLLKDVNDSLEQADQLARLVDR--RKGKINLIAYNAVEGMPY 299
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
P + V AF L H +T IR++ G D AACGQL+ + Q+
Sbjct: 300 GAPERGKVEAFEKRLWDHGLTAFIRRSMGSDIKAACGQLKADEQQ 344
>gi|153815685|ref|ZP_01968353.1| hypothetical protein RUMTOR_01921 [Ruminococcus torques ATCC 27756]
gi|331088258|ref|ZP_08337177.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336440095|ref|ZP_08619694.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145846926|gb|EDK23844.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus torques ATCC
27756]
gi|330408502|gb|EGG87968.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014444|gb|EGN44293.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 355
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 139/283 (49%), Gaps = 54/283 (19%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
R + DGT K L +L D ++E+V + + + C+SSQ GC + C FCA+ G
Sbjct: 77 RQQSKLDGTNKFLFRLYDGNMVESVLMRYKHGN-----SVCISSQAGCRMGCVFCASTIG 131
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIG 192
G RNLS+ E++GQ+ I++I RV+NVV MG GEP+ N + L+ L + + I
Sbjct: 132 GLKRNLSASEMLGQIYQIQKIIGERVSNVVIMGTGEPLDNYNNFLKFIHILTDEHGLNIS 191
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLAIRSAG--------------------------- 225
QR +T+ST G+ I +LA +LQ TLA+ G
Sbjct: 192 QRNVTVSTCGIVPKILELAEERLQITLALSLHGSTQEKRRKLMPVANKYELGEVLSACDT 251
Query: 226 ------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
VND E A EL+ELL R H+NLIP NP++ +QRP +
Sbjct: 252 YFKKTGRRVTFEYSLVHEVNDTDEDAKELSELL--APRNCHLNLIPVNPVKERSFQRPSR 309
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
K+ L F LE I +IR+ G D ACGQLR +++ +
Sbjct: 310 KSALNFKNKLEKSGINVTIRREMGSDIDGACGQLRRRYEEETM 352
>gi|331004330|ref|ZP_08327805.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
oral taxon 107 str. F0167]
gi|330411396|gb|EGG90811.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
oral taxon 107 str. F0167]
Length = 346
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 148/304 (48%), Gaps = 54/304 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ ++FR L+E G I + D T K L LED +IE+V + E
Sbjct: 47 LSKAFREKLKEVASLTGMEAIEVFESKIDDTKKYLFALEDGNIIESVRMKYEHGN----- 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+SSQVGC + C FCA+ G RNLS E++ QV I+++ RV+N+V MG GEPM
Sbjct: 102 SVCISSQVGCRMGCKFCASTLDGLVRNLSVSEMLDQVYKIQKLLGERVSNIVVMGSGEPM 161
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA---------I 221
N ++++ + ++ D + I QR IT+ST G+ I++LA L TLA I
Sbjct: 162 DNYDNIVKFVKIISSDMGLNISQRNITVSTCGIVPKIRELADEGLSITLALSLHAPNDEI 221
Query: 222 RS------------------------------------AGVNDQVEHAVELAELLHEWGR 245
R AG+ND ++ A+ L +L++ GR
Sbjct: 222 RKTIMPVANKYALKDVISACDYYFKKTGRRVSYEYSLVAGINDNIKEAMNLVKLVN--GR 279
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
H+NLIP NPI+ D+++ K + F LE + ++R+ G D ACGQLR F
Sbjct: 280 NIHINLIPVNPIKERDFKQSDKLKIKEFKDFLEKKGVNATVRREMGRDIDGACGQLRRRF 339
Query: 306 QKSP 309
+S
Sbjct: 340 IQSE 343
>gi|345867752|ref|ZP_08819757.1| radical SAM superfamily protein [Bizionia argentinensis JUB59]
gi|344047919|gb|EGV43538.1| radical SAM superfamily protein [Bizionia argentinensis JUB59]
Length = 345
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 161/330 (48%), Gaps = 68/330 (20%)
Query: 30 RGRQRAPW------HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
RG Q W H A + + R + E + + + + ++DGT
Sbjct: 28 RGNQVYEWLWSKSAHTFADMTNLSKETRT--------MLEDNFVINHIKVDDMQKSSDGT 79
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
+K +KL D ++E+V IP + R TACVSSQVGC L CSFCAT + RNL+
Sbjct: 80 IKNAVKLHDGLIVESVLIPTKS-----RTTACVSSQVGCSLDCSFCATSRLKRMRNLNPD 134
Query: 144 EIVGQVLAIEE---IFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMIT 197
EI QV+AI+ ++ +R ++N+VFMGMGEP++N +VL+A + +G + I
Sbjct: 135 EIYDQVVAIDNESRLYHNRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRIV 194
Query: 198 ISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWG--- 244
+ST GVP IKK+A +++ LA+ D++ ++ +L E L W
Sbjct: 195 VSTSGVPKMIKKMADEEVKFKLAVSLHSAIDEIRTSIMPFNATFPLKDLREALEYWYAKT 254
Query: 245 -----------RG-------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
+G VNLI +NPI+ +Q+ + +A+ +
Sbjct: 255 KNRITYEYIVWKGINDKKKDVEALIEFCKFAPSKVNLIEYNPIDDGMFQQAHDEAIDMYV 314
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNE 304
LE + IT ++R++RG D AACGQL N+
Sbjct: 315 NMLEKNNITVTVRRSRGKDIDAACGQLANK 344
>gi|317501928|ref|ZP_07960112.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
gi|316896608|gb|EFV18695.1| cfr family Radical SAM enzyme [Lachnospiraceae bacterium 8_1_57FAA]
Length = 348
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 139/283 (49%), Gaps = 54/283 (19%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
R + DGT K L +L D ++E+V + + + C+SSQ GC + C FCA+ G
Sbjct: 70 RQQSKLDGTNKFLFRLYDGNMVESVLMRYKHGN-----SVCISSQAGCRMGCVFCASTIG 124
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIG 192
G RNLS+ E++GQ+ I++I RV+NVV MG GEP+ N + L+ L + + I
Sbjct: 125 GLKRNLSASEMLGQIYQIQKIIGERVSNVVIMGTGEPLDNYNNFLKFIHILTDEHGLNIS 184
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLAIRSAG--------------------------- 225
QR +T+ST G+ I +LA +LQ TLA+ G
Sbjct: 185 QRNVTVSTCGIVPKILELAEERLQITLALSLHGSTQEKRRKLMPVANKYELGEVLSACDT 244
Query: 226 ------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
VND E A EL+ELL R H+NLIP NP++ +QRP +
Sbjct: 245 YFKKTGRRVTFEYSLVHEVNDTDEDAKELSELL--APRNCHLNLIPVNPVKERSFQRPSR 302
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
K+ L F LE I +IR+ G D ACGQLR +++ +
Sbjct: 303 KSALNFKNKLEKSGINVTIRREMGSDIDGACGQLRRRYEEETM 345
>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
Length = 381
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 142/283 (50%), Gaps = 65/283 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K L+ ++ L+ETV IP + R T CVSSQVGC L CSFC+TGK GF R
Sbjct: 84 SSDGTRKWLVHVDGGGLVETVLIPDGN-----RATLCVSSQVGCSLDCSFCSTGKQGFQR 138
Query: 139 NLSSHEIVGQV-LAIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
+LS+ EI+GQV LAI+ + VTNVV MGMGEP+LN +V+ A + D+
Sbjct: 139 DLSAAEIIGQVWLAIKSYDAFQSGNGRVVTNVVMMGMGEPLLNFDNVVTAMNLMMDDLGY 198
Query: 192 G--QRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------------- 222
G +R +T+ST GV + KLA +++LA+
Sbjct: 199 GISKRRVTLSTSGVVPALDKLAEVS-EASLAVSLHAPNDELRNQLVPVNRRYPIAQLLAS 257
Query: 223 ---------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
AG+NDQ E A ELA LL ++ +NLIPFNP S
Sbjct: 258 AQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARELALLLADF--PCKINLIPFNPFPNSG 315
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
Y+RP AV F L ++R TRG D AACGQL E
Sbjct: 316 YERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQLVGE 358
>gi|384085567|ref|ZP_09996742.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 363
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 139/287 (48%), Gaps = 58/287 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
AADGT K L+ L D IETV IP ED R T CVSSQVGC L CSFCATG G +R
Sbjct: 84 AADGTRKWLLGLPDGNAIETVFIPEED-----RGTLCVSSQVGCSLACSFCATGAQGLNR 138
Query: 139 NLSSHEIVGQVLAIEEIFK-HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ--IGQRM 195
NL +HEI+ Q+ +I +TN+VFMGMGEP+LNL+ VL A L D G +
Sbjct: 139 NLDTHEIIAQIRTARQIQGLDAITNIVFMGMGEPLLNLRQVLPALDLLRDDFAYGFGPKR 198
Query: 196 ITISTVGVPNTIKKLAS---------------------------YKLQSTLA-------- 220
IT+ST GV + +L + Y L L
Sbjct: 199 ITVSTAGVVPGLDRLGAESPVNLAISLHASRDEVRDVLVPVNRHYPLAELLDACRRYPLL 258
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ GVND A L +L G VNLIPFN GSDY+R +K +
Sbjct: 259 PRRRITFEYVMLDGVNDSDADARALLRILS--GIPAMVNLIPFNSFPGSDYKRSPQKRID 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL----RNEFQKSPLRIDS 314
AF + + T R+ RG D +AACGQL R+ + PLR+ +
Sbjct: 317 AFRDIILRGDVMTVTRRPRGDDIAAACGQLAGQVRDGRRSIPLRVQA 363
>gi|436840639|ref|YP_007325017.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432169545|emb|CCO22913.1| Ribosomal RNA large subunit methyltransferase N [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 345
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 149/287 (51%), Gaps = 63/287 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T+ DGT+KLL++L D L+ETV IP+E R T C+S+QVGC + C+FC TG GF
Sbjct: 72 TSKDGTIKLLLRLADGALVETVLIPMES-----RYTQCLSTQVGCAMGCTFCNTGLMGFE 126
Query: 138 RNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
RN++ EI+GQVLA + + + N+VFMGMGEP+LNL +++++ + LN + +
Sbjct: 127 RNMTMSEILGQVLAGRKYLQDNNLNPLKNLVFMGMGEPLLNLDNLIKSLKTLNNPEGLSF 186
Query: 192 GQRMITISTVGVPNTIK---------------------------KLASYKLQSTLA---- 220
R IT+S+VG ++ K A + LA
Sbjct: 187 VPRRITVSSVGFIKPLEILGETGLTLPAISLHAPTQELREKIMPKAAKTHIDDLLAAMDK 246
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
+ GVND +EHA +L +L R VNLI +NP + Y+ P +
Sbjct: 247 FPLKPRERVTYEYLLLGGVNDSIEHARQLVRILGH--RKCKVNLIAYNPGDRPLYEAPAR 304
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDS 314
+ VLAF L KIT +IR++ G D AACGQL+ + R+DS
Sbjct: 305 EKVLAFEKYLWDKKITATIRRSMGQDIKAACGQLKAD------RLDS 345
>gi|420263010|ref|ZP_14765650.1| cfr family radical SAM enzyme [Enterococcus sp. C1]
gi|394769974|gb|EJF49792.1| cfr family radical SAM enzyme [Enterococcus sp. C1]
Length = 355
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 156/311 (50%), Gaps = 63/311 (20%)
Query: 50 PRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP 109
P+PV + A + + L A+DGTVK L +L DN +IETV + E G
Sbjct: 49 PKPVIEKLT-----AAFVINPLKQMVVQEASDGTVKYLFQLPDNHMIETV--LMRQEYG- 100
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVV 164
++ CV++QVGC + C+FCA+G R+L++ EIV Q++ ++ F RV++VV
Sbjct: 101 --MSVCVTTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDERNEGERVSHVV 158
Query: 165 FMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI- 221
MG+GEP N +V+ + +N K + IG R IT+ST G+ + IK+ A LQ LAI
Sbjct: 159 VMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAIS 218
Query: 222 --------RSA------------------------------------GVNDQVEHAVELA 237
R++ VND+ EHA +LA
Sbjct: 219 LHAPNNEVRTSMMRINRNFPIEKLMAAVDYYLEKTNRRITFEYIMLDHVNDRPEHARQLA 278
Query: 238 ELLHEWGRGHHVNLIPFNPIEGSD-YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASA 296
LL + + +VNLIP+NP+ D Y R K VLAF L+ + I IR+ G D A
Sbjct: 279 ALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEHGTDIDA 338
Query: 297 ACGQLRNEFQK 307
ACGQLR++ K
Sbjct: 339 ACGQLRSKQMK 349
>gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 413
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 141/285 (49%), Gaps = 57/285 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP------MRLTACVSSQVGCPLRCSF 128
R + DGTVK L++L D R IE+V IP E GP R+T CVS+QVGC ++C+F
Sbjct: 115 RQERSQDGTVKFLLRLADGRHIESVFIPDETPAGPDGSPRAARITFCVSTQVGCAMKCAF 174
Query: 129 CATGKGGFSRNLSSHEIVGQ--VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN 186
C TGK G R+L++ EI GQ VLA E F N+V MGMGEP+ N + ++A R L
Sbjct: 175 CLTGKMGIDRSLTAGEIAGQVRVLARELGFLETRFNIVLMGMGEPLHNYEETMKALRVLA 234
Query: 187 KD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RSAG-- 225
+ + R +T+STVGV +++LA+ L LAI R G
Sbjct: 235 DEHGFAMSARRMTLSTVGVLPALERLATEPLMPNLAISLHATTEDQRDLLVPINRKYGLK 294
Query: 226 --------------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
VND E A L +LLH G VNL+P N G
Sbjct: 295 ELLDACRRFPLKRRERITFEYVLLREVNDTPEDARRLVKLLH--GIKGKVNLLPLNEAAG 352
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
++RP V +FA L H I S+R++RG D AACGQL E
Sbjct: 353 IPFERPSDDRVNSFARILADHGIPVSVRKSRGRDIRAACGQLITE 397
>gi|168027205|ref|XP_001766121.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682764|gb|EDQ69180.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 180
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 109/161 (67%), Gaps = 11/161 (6%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
VGR PI +T+ DGTV++L+ LED+RL+E VGIPV KG RLT CV GC L C+
Sbjct: 1 VGRSPIHHFITSKDGTVQVLLSLEDDRLVEAVGIPVTYRKGGSRLTDCV----GCALNCT 56
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAH----- 182
FC TGK GF+RNL SHEIV + ++++ + +TN+VFMGMGEP++NL +VL+ H
Sbjct: 57 FCCTGKDGFARNLKSHEIVDRACILQDLLRKPMTNMVFMGMGEPLINLGAVLDDHLSKTD 116
Query: 183 --RCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI 221
+ ++ + Q+M+ I TVG+ NTI++LA +K S L +
Sbjct: 117 VLYIIIQESKTAQQMMVILTVGILNTIRRLAPHKFHSMLVV 157
>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
Length = 342
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 153/305 (50%), Gaps = 57/305 (18%)
Query: 52 PVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ ++ R+ L+E + + +L I R V+ D TVK L LEDN +IE V I K
Sbjct: 46 DISKNLRSKLKEIAY-ISQLKIEARRVSEVDDTVKYLFLLEDNNIIEGVAI-----KYRF 99
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
TAC+S+QVGC +RCSFCA+ GG R+L + E+V QV+AI+ + +++N+V MG GE
Sbjct: 100 GNTACISTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVIAIDGDY-GKISNIVLMGSGE 158
Query: 171 PMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
P N V++ + +N + IG R ITIST G+ I + A KLQ L+I
Sbjct: 159 PFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPND 218
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
GVND+ EHA +L +LL
Sbjct: 219 ELRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLK-- 276
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
G HVNLIP N ++ +++ + V+ F +E I+ ++R+ G D AACGQLR
Sbjct: 277 GMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQLRR 336
Query: 304 EFQKS 308
++ K
Sbjct: 337 KYLKE 341
>gi|197302405|ref|ZP_03167461.1| hypothetical protein RUMLAC_01133 [Ruminococcus lactaris ATCC
29176]
gi|197298526|gb|EDY33070.1| 23S rRNA m2A2503 methyltransferase [Ruminococcus lactaris ATCC
29176]
Length = 351
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 154/331 (46%), Gaps = 57/331 (17%)
Query: 28 PSRGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86
P R +Q W HV+ + ++ R L+E + + R ++ DGT K
Sbjct: 24 PFRAKQVYEWLHVKLADDFDEMTN--LSKALREKLKEEYVILPVKMLERQISQIDGTNKF 81
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L +L D ++E+V + + + C+SSQ GC + C+FCA+ GG RNLSS E++
Sbjct: 82 LFQLYDGNVVESVLMRYKHGN-----SVCISSQAGCRMGCAFCASTIGGLQRNLSSSEML 136
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVP 204
GQ+ I++I + RV+NVV MG GEP+ N ++ L L + + I QR +T+ST G+
Sbjct: 137 GQIYQIQKITQERVSNVVVMGTGEPLDNYENFLNFVHLLTDEHGLNISQRNVTVSTCGIV 196
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
I +LA LQ TLA+
Sbjct: 197 PKILELAKEHLQITLALSLHGSTQEKRKRLMPVANKYHLPEVLDACDTYFRETGRRVTFE 256
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND E A EL LL R H+NLIP NP+ D+ RP +K L F LE
Sbjct: 257 YSLVHGVNDTEEDARELTALLKP--RNCHLNLIPVNPVRERDFVRPSRKNALNFKNKLEK 314
Query: 280 HKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
I +IR+ G D ACGQLR + K+ +
Sbjct: 315 SGINVTIRREMGSDIDGACGQLRRSYVKADV 345
>gi|345017808|ref|YP_004820161.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033151|gb|AEM78877.1| Ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 342
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 154/305 (50%), Gaps = 57/305 (18%)
Query: 52 PVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ ++ R+ L+E + + +L I R V+ D TVK L LEDN +IE V I K
Sbjct: 46 DISKNLRSKLKEIAY-ISQLKIEARRVSEVDDTVKYLFLLEDNNIIEGVAI-----KYRF 99
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
TACVS+QVGC +RCSFCA+ GG R+L + E++ QV+AI+ + +++N+V MG GE
Sbjct: 100 GNTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMIDQVIAIDGDY-GKISNIVLMGSGE 158
Query: 171 PMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
P N V++ + +N + + IG R ITIST G+ I + A KLQ L+I
Sbjct: 159 PFDNYDEVMKFIKIVNNPQGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHAPND 218
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
GVND+ EHA +L +LL
Sbjct: 219 ELRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLK-- 276
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
G HVNLIP N ++ +++ + V+ F +E I+ ++R+ G D AACGQLR
Sbjct: 277 GMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQLRR 336
Query: 304 EFQKS 308
++ K
Sbjct: 337 KYLKE 341
>gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 342
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 164/335 (48%), Gaps = 58/335 (17%)
Query: 22 FFFFTCPSRGRQRAPWHVRAGASKTR-RRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTA 79
FF SR R + + G T + + ++ R+ L+E + + +L + R V+
Sbjct: 15 FFVNIGESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEIAY-ISQLKVEARRVSE 73
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
D TVK L LED +IE V I K TACVS+QVGC +RCSFCA+ GG R+
Sbjct: 74 IDNTVKYLFLLEDKNIIEGVAI-----KYRFGNTACVSTQVGCNMRCSFCASAIGGKVRD 128
Query: 140 LSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMIT 197
L + E+V QV++I+ + +++N+V MG GEP N + V++ + +N + IG R IT
Sbjct: 129 LKASEMVDQVMSIDSDY-GKISNIVLMGSGEPFDNYEEVMKFIKIVNNPYGLGIGSRHIT 187
Query: 198 ISTVGVPNTIKKLASYKLQSTLAIR----------------------------------- 222
IST G+ I + A KLQ L+I
Sbjct: 188 ISTCGIIPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEELMKACKYYIEKT 247
Query: 223 ----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
GVND+ EHA +L +LL G HVNLIP N ++ +++ + V+
Sbjct: 248 RRRITFEYSLIEGVNDKKEHAYQLVDLLQ--GMLCHVNLIPINYVKEIGFKKAANEKVMM 305
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
F +E+ I+ ++R+ G D AACGQLR ++ K
Sbjct: 306 FKKIIENAGISCTVRRELGSDIEAACGQLRRKYLK 340
>gi|392940848|ref|ZP_10306492.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
gi|392292598|gb|EIW01042.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
Length = 342
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 153/305 (50%), Gaps = 57/305 (18%)
Query: 52 PVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ ++ R+ L+E + + +L I R V+ D TVK L LEDN +IE V I K
Sbjct: 46 DISKNLRSKLKEIAY-ISQLKIEARRVSEVDDTVKYLFLLEDNNIIEGVAI-----KYRF 99
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
TACVS+QVGC +RCSFCA+ GG R+L + E+V QV+AI+ + +++N+V MG GE
Sbjct: 100 GNTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVIAIDGDY-GKISNIVLMGSGE 158
Query: 171 PMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
P N V++ + +N + IG R ITIST G+ I + A KLQ L+I
Sbjct: 159 PFDNYDEVMKFIKIVNNPYGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHAPND 218
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
GVND+ EHA +L +LL
Sbjct: 219 ELRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLK-- 276
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
G HVNLIP N ++ +++ + V+ F +E I+ ++R+ G D AACGQLR
Sbjct: 277 GMLCHVNLIPINYVKEIGFKKANNEKVMMFKKIIEDAGISCTVRRELGSDIEAACGQLRR 336
Query: 304 EFQKS 308
++ K
Sbjct: 337 KYLKE 341
>gi|330752065|emb|CBL80576.1| radical SAM superfamily protein, UPF0063 [uncultured Flavobacteriia
bacterium]
Length = 349
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 147/297 (49%), Gaps = 55/297 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
L A + L + + DGT+K +KL D +E+V IP E R+TACVSSQV
Sbjct: 58 LLNANFNFNLLEVDLMQRSKDGTIKNAVKLHDGAFVESVLIPTEK-----RITACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----EEIFKHRVTNVVFMGMGEPMLNLK 176
GC L C+FCAT RNL EI QV+ I +E F +TN+VFMGMGEP+LN
Sbjct: 113 GCSLDCTFCATASLKRMRNLGLDEIYDQVVVIHNQGKEYFGRPLTNIVFMGMGEPLLNYN 172
Query: 177 SVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQ----- 229
+VL A + K + + R IT+ST+GVP IK++A ++ LAI ++
Sbjct: 173 NVLAAIEKITDPKGLGLSPRRITLSTIGVPKLIKRMADDGVKFNLAISLHSAIEEKRAKL 232
Query: 230 --VEHA----VELAELLHEW----GRG-----------------------------HHVN 250
+ H V+L E L W GRG VN
Sbjct: 233 MPLAHKSATLVDLRESLQYWYAKTGRGVTFEYVIWKDLNDTEQDVKALAKFCGAIPTKVN 292
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
+I +NPI+ Y + ++AV + LES I T+IR +RG D AACGQL N+ ++
Sbjct: 293 IIQYNPIDNGPYTQASQEAVNMYKETLESKGIITTIRHSRGQDIDAACGQLANKVEE 349
>gi|262199015|ref|YP_003270224.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
gi|262082362|gb|ACY18331.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
Length = 378
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 158/338 (46%), Gaps = 61/338 (18%)
Query: 17 AQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRP-VPQSFRNDLQEAGWTVGRLPIFR 75
A+ + R R W GA TR +P++ R L E T+G L +
Sbjct: 26 AETVALALELGQPRYRGEQIWRWVHGAGVTRLEDMANLPRTLRELLAERT-TLGTLRVDA 84
Query: 76 TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGG 135
T+ DGT KL ++ D R IETV IP D +LT C+SSQVGC L C FCAT K G
Sbjct: 85 AQTSRDGTRKLRLRTRDGRAIETVLIPDGD-----KLTQCISSQVGCALDCDFCATAKLG 139
Query: 136 FSRNLSSHEIVGQV-----LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV- 189
+R+L EIV QV L E + R+TN+V+MGMGEP+ N +V+++ R L ++
Sbjct: 140 LTRHLDPGEIVDQVYRGRALLAEVEPERRITNLVYMGMGEPLHNYANVVKSLRLLTSELG 199
Query: 190 -QIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------------------------- 222
+ QR IT+STVG I+KL ++ LAI
Sbjct: 200 ANLSQRRITVSTVGQVPGIEKLGREDVRPNLAISLNASSDEIRDRIMPVNRKWNIARLLQ 259
Query: 223 -------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
AGVND + A L+ LL G +N+IP+NP G+ YQ
Sbjct: 260 AVRDYPLERRRRVTFEYVLLAGVNDSMADAARLSRLLR--GIPCKLNIIPWNPHPGAPYQ 317
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP AV AF + + T +R RG D AACGQL
Sbjct: 318 RPSAHAVEAFQNEAKRLGLPTYLRTPRGDDIDAACGQL 355
>gi|336400464|ref|ZP_08581243.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
21_1A]
gi|336162652|gb|EGN65616.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
21_1A]
Length = 358
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
++ D T K L +LED IETV + +D K +R T C+SSQVGCP++CSFCATG+ G
Sbjct: 75 ISKIDRTEKFLFELEDKGTIETVLLRHKDSKNKEIRNTLCISSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ Q+ IE + + + N+VFMGMGEP+LN+ ++ ++ ++ + +
Sbjct: 135 YMRNLSVSEILNQIYTIERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ K+ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|408372889|ref|ZP_11170588.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
gi|407767241|gb|EKF75679.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
Length = 381
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 142/287 (49%), Gaps = 63/287 (21%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGT K + +L+ +ETV IP R T CVSSQVGC + CSFC+TGK GF R++
Sbjct: 79 DGTRKWVFRLDTGGAVETVFIP-----DGRRGTLCVSSQVGCAVDCSFCSTGKQGFQRDM 133
Query: 141 SSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QI 191
+S EI+GQV F +H +TNVV MGMGEP+LN +VL A R + D+ I
Sbjct: 134 TSAEIIGQVWQASRAFGPRRNLGEHPITNVVMMGMGEPLLNYDNVLTAMRIMKDDLGYGI 193
Query: 192 GQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA---- 220
G++ IT+ST GV + +L+ Y L+ +A
Sbjct: 194 GKKRITLSTSGVIPKMDQLSDDLDVALAVSLHAPNDELRNELVPLNRKYPLKELMAACRR 253
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ VND+ EHA +L +LL+ G +NLIPFNP + Y+R
Sbjct: 254 YSKNITHRHNTITMEYVMLRDVNDKPEHARQLVKLLN--GIPVKINLIPFNPFPHAGYER 311
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
K +L F L + + T++R TRG D AACGQL + Q R
Sbjct: 312 SRKSDILEFHKYLNDNGLLTTVRTTRGDDIDAACGQLVGQVQDRTRR 358
>gi|315918044|ref|ZP_07914284.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|317058012|ref|ZP_07922497.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313683688|gb|EFS20523.1| radical SAM domain-containing protein [Fusobacterium sp. 3_1_5R]
gi|313691919|gb|EFS28754.1| radical SAM domain-containing protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 349
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 53/281 (18%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
V+ D T K L +LED IETV + D++ T C+SSQVGCP++CSFCATG+ GF
Sbjct: 73 VSKIDKTEKFLFQLEDGNTIETVLLRHRDQRN----TLCISSQVGCPVKCSFCATGQDGF 128
Query: 137 SRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
RNL EI+ QV +E R +TN+VFMGMGEP++N++++L+A L+ + + I
Sbjct: 129 VRNLRVSEILNQVYTVERRLNKRGEKLTNLVFMGMGEPLINIEALLKALEILSSEEGICI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQVEHAV---------ELAELLH 241
+R ITIST G+ I+++ K+ LA+ + +N++ + + +LA +L
Sbjct: 189 SKRRITISTSGIVPAIERILMEKVPVELAVSLHSAINEKRDQIIPINKAYPLEDLAAVLG 248
Query: 242 EWGR---------------------------------GHHVNLIPFNPIEGSDYQRPYKK 268
E+ R H VNLIP NP+ + +RP +K
Sbjct: 249 EYQRQTKRRLTFEYILIKDFNVSEGDANALADFAHQFDHVVNLIPCNPVADTGLERPSEK 308
Query: 269 AVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQKS 308
+ F L++ K+ S+RQ +G D ACGQLR +K
Sbjct: 309 KIERFYDYLKNVRKVNVSLRQEKGTDIDGACGQLRQNQRKK 349
>gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato Max13]
gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato K40]
gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
Length = 382
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 STDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A R + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMRLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y LQ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHAPNDALRNQLVPINKKYPLQMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|410618485|ref|ZP_11329430.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
gi|410162027|dbj|GAC33568.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
Length = 380
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 63/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K +++LE + +ETV IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 82 ASDGTIKFVLRLEGGQEVETVWIPDAD-----RATLCVSSQVGCALECTFCSTAQQGFNR 136
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + K +TNVV MGMGEP+LNLK+V+ A + D+
Sbjct: 137 NLSVSEIIGQVWRVATTIGLSNDSSKRPITNVVMMGMGEPLLNLKNVVPAMELMLDDLAF 196
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + L Y +Q LA
Sbjct: 197 GLSKRRVTLSTSGVVPALDILGDKIDVALAISLHAPDDKLRDELVPVNKKYPIQEFLAGV 256
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ GVND + A LA++L + +NLIPFNP GS Y
Sbjct: 257 RRYLAKSHANQGKVTVEYVMLNGVNDSTDQAHALAKVLAD--TPCKLNLIPFNPYPGSPY 314
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + FA L S+ + +R+TRG D AACGQL
Sbjct: 315 TRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|289422335|ref|ZP_06424185.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
653-L]
gi|289157280|gb|EFD05895.1| radical SAM enzyme, Cfr family [Peptostreptococcus anaerobius
653-L]
Length = 352
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 152/304 (50%), Gaps = 56/304 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP 109
+ VP+S R+ L+E +G L I + + D T K L L D +IETV + +
Sbjct: 51 KNVPKSLRDKLREKS-IIGNLDIELKLESKIDNTKKYLFLLNDGNIIETVAMDYDS---- 105
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG 169
RLT CVS+QVGC + C+FCA+ GG SR+L + EI+ Q++ ++E RV+N+V MG G
Sbjct: 106 -RLTVCVSNQVGCRMGCNFCASTIGGLSRHLEAWEILDQIMKVQEDLGKRVSNIVMMGSG 164
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227
EP+ N + + + +N+ + IG R IT+S G+ + I +LA ++ LAI
Sbjct: 165 EPLDNFDNSMRFLKLVNEKNGLNIGNRHITLSRCGLVDRILELADMQIPINLAISLHSPY 224
Query: 228 DQ---------------------------------VEHAV------------ELAELLHE 242
D+ E+A+ +L ELL
Sbjct: 225 DEERKEIMPIAKKYTIKELMDACRYYISKTNRRVTFEYALIKDKNNTDREAKKLVELLR- 283
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP NPI DY++P + + F L+ +KI SIR + G D S ACGQLR
Sbjct: 284 -GMLCHVNLIPINPIAERDYEKPNIEYINKFKNYLDKNKIPVSIRNSMGSDISGACGQLR 342
Query: 303 NEFQ 306
+++
Sbjct: 343 RDYK 346
>gi|444377292|ref|ZP_21176524.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
gi|443678582|gb|ELT85250.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
Length = 373
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ N+ +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMRV-GNQDVETVYIPEDD-----RATLCVSSQVGCALDCKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAKEIGVEKETGRRPITNVVMMGMGEPLLNMKNLIPALNLMLDDLAY 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++A Y +++ LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMAGKIDVALAISLHAPTDELRSQIMPINDRYDIETFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND +EHA +LAELL + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGRVTVEYILLDHVNDDMEHARQLAELLKD--TPAKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L + T +R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYDYTVIVRKTRGDDIDAACGQL 347
>gi|436838552|ref|YP_007323768.1| radical SAM enzyme, Cfr family [Fibrella aestuarina BUZ 2]
gi|384069965|emb|CCH03175.1| radical SAM enzyme, Cfr family [Fibrella aestuarina BUZ 2]
Length = 353
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 147/288 (51%), Gaps = 49/288 (17%)
Query: 63 EAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGC 122
+A + + L + + DGT+K KL D L+E V IP R+TACVSSQVGC
Sbjct: 57 DAHFAINALTVATEQRSNDGTIKSSFKLYDGNLVEGVLIPALRTDDQDRMTACVSSQVGC 116
Query: 123 PLRCSFCATGKGGFSRNLSSHEIVGQVLAIE----EIFKHRVTNVVFMGMGEPMLNLKSV 178
L C FCATG RNL++ EIV QV+ I+ E + +TN+V+MGMGEP+LN K+V
Sbjct: 117 SLTCKFCATGYMDRKRNLTAAEIVDQVVEIDRQAKETYSSPLTNIVYMGMGEPLLNYKNV 176
Query: 179 LEA-HRCLNKD-VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV-- 234
LE+ R + D + + + ITIST G+ I++L +++ LA+ NDQ +
Sbjct: 177 LESVDRITSPDGLGMSPKRITISTAGIAKMIRQLGDDGVKTNLALSLHAANDQKRDQIMP 236
Query: 235 --------ELAELLHEWGRG------------HH---------------------VNLIP 253
LA+ L+ + R +H VN+I
Sbjct: 237 INESNSLANLADALNYFYRKTGTRVTFEYIVFYHFNDTIQDAKELFEFTKKVPAKVNIIE 296
Query: 254 FNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+NPI ++++ + + FAG L+ +T +IR++RG D AACGQL
Sbjct: 297 YNPIAEANFKNTDPQTLDKFAGYLDDRGVTVNIRRSRGKDIDAACGQL 344
>gi|383451596|ref|YP_005358317.1| ribosomal RNA large subunit methyltransferase N [Flavobacterium
indicum GPTSA100-9]
gi|380503218|emb|CCG54260.1| Ribosomal RNA large subunit methyltransferase N [Flavobacterium
indicum GPTSA100-9]
Length = 346
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 150/293 (51%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
+ EA + + + + + DGTVK ++L D+ ++E+V IP E R TACVSSQV
Sbjct: 58 MLEANFVINHIKVDTMQRSEDGTVKNAVRLHDDLIVESVLIPTE-----TRTTACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHR-VTNVVFMGMGEPMLNLK 176
GC L C+FCAT + RNL+ EI QV AI+ ++ +R ++N+VFMGMGEP++N
Sbjct: 113 GCSLDCNFCATARLKRMRNLNPDEIYDQVAAIDNESRLYYNRPLSNIVFMGMGEPLMNYP 172
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+V++A + +G + IT+ST GV IKK+A +++ LA+ +++ + +
Sbjct: 173 NVMKAIEKITSPEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAVSLHSAVEEIRNEI 232
Query: 235 ----------ELAELLHEWGRGH---------------------------------HVNL 251
EL E L W + VNL
Sbjct: 233 MPFTKSFPLPELKEALEYWYKKTKSKVTYEYVVWKGINDDKKSIDALVKFCKYVPCKVNL 292
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ +Q+ ++A+ + ALE H I +R++RG D AACGQL N+
Sbjct: 293 IEYNPIDDGMFQQASEQAINNYISALEKHDIVVKVRRSRGKDIDAACGQLANK 345
>gi|374620265|ref|ZP_09692799.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
gi|374303492|gb|EHQ57676.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
Length = 378
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 142/279 (50%), Gaps = 63/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K IK++ L+E V IP D R T CVSSQVGC L C FC+TGK GF R
Sbjct: 85 SADGTRKWAIKVDGGALVEAVLIPEGD-----RATLCVSSQVGCSLDCKFCSTGKQGFQR 139
Query: 139 NLSSHEIVGQV-LAIE-----EIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
+L++ EI+GQV LAI + K R VTNVV MGMGEP+LN +V+ + + D+
Sbjct: 140 DLTAAEIIGQVWLAINSYDGWQAGKGRVVTNVVMMGMGEPLLNFDNVVSSMDLMCDDLAY 199
Query: 192 G--QRMITISTVGVPNTIKKLA---SYKLQSTL-----AIRS------------------ 223
G +R +T+ST GV + +LA L +L AIR+
Sbjct: 200 GLSKRKVTLSTSGVVPALDRLAELSDVSLAVSLHAPNDAIRNKIVPINRRYPIAKLLDSA 259
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVNDQVEHA ELA LL ++ +NLIPFN S +
Sbjct: 260 RAYIDAQTDRKRVVTIEYTLLAGVNDQVEHAHELAALLKDY--PCKINLIPFNDFPNSGF 317
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+RP AV F L ++R TRG D AACGQL
Sbjct: 318 ERPSGNAVSRFWKVLMEAGFIVTVRTTRGDDIDAACGQL 356
>gi|336451639|ref|ZP_08622076.1| methyltransferase [Idiomarina sp. A28L]
gi|336281452|gb|EGN74732.1| methyltransferase [Idiomarina sp. A28L]
Length = 378
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 142/278 (51%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K ++L D + +E+V IP D R T CVSSQVGC L C+FC+TG+ GF+R
Sbjct: 78 SIDGTIKFAMELSDGQEVESVWIPEAD-----RATLCVSSQVGCALECTFCSTGQQGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + ++ VTNVV MGMGEP+LN+K+++ A + + +D
Sbjct: 133 NLKVSEIIGQVWRVNKLLGSYGDTGVKPVTNVVMMGMGEPLLNMKNLVPALQLMLEDFGY 192
Query: 192 G--QRMITISTVGV---------------------PNT--------IKK----------- 209
G +R IT+ST GV PN I K
Sbjct: 193 GLSKRRITVSTSGVVPALDQLREQVDVALAISLHAPNNKLRDEIVPINKKYPIAEFLAAS 252
Query: 210 ---LASYKLQSTLAIRSA---GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ + K Q+ + + +ND EHA ELAE+L + +NLIPFNP GS+Y
Sbjct: 253 RRYVEASKAQTKVTVEYVMIDHINDSTEHAHELAEVLKD--TPSKINLIPFNPFPGSEYG 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L + T +R+TRG D AACGQL
Sbjct: 311 RSSNSRIDRFSKVLMDYGYTVIVRKTRGDDIDAACGQL 348
>gi|403386877|ref|ZP_10928934.1| ribosomal RNA large subunit methyltransferase N [Clostridium sp.
JC122]
Length = 344
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 154/303 (50%), Gaps = 56/303 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGP 109
+ + +S + L++ + +G + + DG T K L K++DN LIE+V + +
Sbjct: 44 KNLSKSTKEKLKD-NFYIGVPKVLEKYNSVDGNTRKYLYKMKDNNLIESVVMQYKHGN-- 100
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG 169
+ CVS+QVGC + C FCA+ G RNL+S EI+GQ++ +E R++NVV MG G
Sbjct: 101 ---SICVSTQVGCRMGCKFCASTIDGVVRNLTSGEILGQIIKAQEELGERISNVVLMGSG 157
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----- 222
EP+ N ++V++ +N D + IGQR IT+ST G+ IK+LA +Q TLAI
Sbjct: 158 EPLDNFENVIKFLELVNADYGLNIGQRHITLSTCGIVPKIKELADKDMQITLAISLHAPN 217
Query: 223 ----------------------------------------SAGVNDQVEHAVELAELLHE 242
G ND+ E A+EL+++L
Sbjct: 218 NEMRKQTMPIAKAFNIDELLEACNYYIDKTNRRITFEYALVKGFNDREEDALELSKILK- 276
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP N I+ S+ +R K + F L + I T++R+ GLD +AACGQLR
Sbjct: 277 -GMLCHVNLIPINEIKESELKRANIKEINNFKDILIKNGIETTVRKEMGLDINAACGQLR 335
Query: 303 NEF 305
+
Sbjct: 336 RSY 338
>gi|365093283|ref|ZP_09330349.1| radical SAM protein [Acidovorax sp. NO-1]
gi|363414457|gb|EHL21606.1| radical SAM protein [Acidovorax sp. NO-1]
Length = 373
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 144/295 (48%), Gaps = 64/295 (21%)
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
LP+ + DGTVK L + D +E V IP ED++G T CVSSQ GC + C FC+
Sbjct: 65 LPVISEHVSTDGTVKWLFDVGDGNAVEAVFIP-EDDRG----TLCVSSQAGCAVGCRFCS 119
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHR 183
TG GFSRNL++ EIV Q+ E + R ++NVV MGMGEP+ N +++ A R
Sbjct: 120 TGHQGFSRNLTTGEIVAQLWFAEHSLRQRLQSGDRVISNVVMMGMGEPLQNYSALVPALR 179
Query: 184 CLNKDVQIG--QRMITISTVGVPNTIKKLA---------------------------SYK 214
+ D G +R +T+ST GV + +LA Y
Sbjct: 180 VMLDDHGYGLSRRRVTVSTSGVVPMMDRLALDCPVALAVSLHAPNDPLRDNLVPLNRKYP 239
Query: 215 LQSTLAIRS------------------AGVNDQVEHAVELAELLHEWGRGHHV----NLI 252
++ +A + GVNDQVEHA +L EL+ RG V NLI
Sbjct: 240 IEELMAACNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIELVKP-ARGAGVRCKFNLI 298
Query: 253 PFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
PFNP S R + VLAFA L I T++R+TRG D AACGQL + +
Sbjct: 299 PFNPFPASGLLRSPQNQVLAFAKVLSEAGIVTTVRKTRGDDIDAACGQLAGDVKD 353
>gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
Length = 388
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 154/320 (48%), Gaps = 70/320 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGI---PVEDEKG 108
+P R L+E +G L + V++ D T K+L++L D +LIE+V + P+ +
Sbjct: 64 LPLKLRQRLEEEA-CIGPLVVRSEVSSKDDRTRKILLELADGKLIESVLMLYPPLGESSA 122
Query: 109 PMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK----------- 157
R T CVSSQ GC C+FCATG+ GF R+L S EI+ QVL +
Sbjct: 123 --RATICVSSQAGCAFGCTFCATGQMGFDRHLQSGEIIAQVLHFARELRATPWSAAGLPG 180
Query: 158 ----HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTIKKLA 211
+TN+V MGMGEP+ N +VL+A R LN +G R +T+STVG+ I+KL+
Sbjct: 181 STPIDHITNIVLMGMGEPLHNYDNVLQALRILNSAAGFNLGARHMTVSTVGLVPAIRKLS 240
Query: 212 SYKLQSTLAI---------RS------------------------------------AGV 226
+LQ LAI RS AGV
Sbjct: 241 QEQLQVNLAISLHAPTNEARSQTMPVNRKYPLEELLAACQDYIAATRRQVTFEYVLLAGV 300
Query: 227 NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSI 286
ND E A +LAELL + HVN IP N + Y+ P A+ AF L I+ S+
Sbjct: 301 NDTPERAQQLAELLAPLKQFAHVNCIPVNAT-SAGYRPPGPDAIRAFRNILFERGISNSV 359
Query: 287 RQTRGLDASAACGQLRNEFQ 306
R RG D +AACGQLR F+
Sbjct: 360 RAERGDDIAAACGQLRTRFE 379
>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
gi|123741643|sp|Q31I07.1|RLMN_THICR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 155/330 (46%), Gaps = 67/330 (20%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R Q W + G S + +S R L + R P I +ADGT+K
Sbjct: 30 PFRAAQVMKWIHQFGVSDFEEMTN-ISKSLREKLSKTALI--RTPKIVSEQRSADGTIKW 86
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L++++++ +E V IP E +G T C+SSQVGC L CSFC+TG+ GF+RNL + EIV
Sbjct: 87 LLEVDNHNCVEAVFIP-EKSRG----TLCISSQVGCALECSFCSTGQQGFNRNLENWEIV 141
Query: 147 GQVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
Q+ + + ++NVVFMGMGEP+LN+K R L D G +R +TI
Sbjct: 142 AQMWVANKALGCKPKEERIISNVVFMGMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTI 201
Query: 199 STVGVPNTIKKLASYKLQSTLAIRSAG--------------------------------- 225
ST GV I K+ L +LAI
Sbjct: 202 STAGVVPAIDKIKE-SLDVSLAISLHAPNNALRDELVPINKKYPLEVLMPALHRYVEGGH 260
Query: 226 --------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
VND++EHA +L ELL + VNLIPFNP +DY+R AV
Sbjct: 261 SKKHVTVEYVMLDHVNDRLEHAQQLIELLGDL--PCKVNLIPFNPFPNTDYKRSSNNAVH 318
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
F AL + ++R+TRG D AACGQL
Sbjct: 319 RFKDALMEAGVNCTVRRTRGDDIDAACGQL 348
>gi|260654398|ref|ZP_05859888.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
gi|260631031|gb|EEX49225.1| radical SAM enzyme, Cfr family [Jonquetella anthropi E3_33 E1]
Length = 352
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 139/269 (51%), Gaps = 51/269 (18%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L +L D +E+V + + LTAC+SSQVGCPL+C+FCATG+GGF R
Sbjct: 76 SADGTKKYLWELSDGARVESVLMDHGNH-----LTACLSSQVGCPLKCAFCATGRGGFER 130
Query: 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMI 196
N+++ EIVG LA+E + NVVFMGMGEP+LN +V A RCL K +G R +
Sbjct: 131 NMTAGEIVGHFLAMEADLGKPIGNVVFMGMGEPLLNFVNVERAIRCLLEPKMRGMGVRHV 190
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQ--------------------------- 229
TIST GV + I+KLA L L + ND+
Sbjct: 191 TISTAGVADGIRKLADSGLGVYLCLSLHAPNDELRSRLMPINERYPLPQVLDALKYWQGK 250
Query: 230 ------VEHAV-----ELAELLHEW-----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAF 273
VE+ + +L EL +E +VNLIP+NP+ S + RP + F
Sbjct: 251 TGVRLTVEYVLIKGVTDLPELAYELPTLFSDLQTYVNLIPYNPVIPS-FSRPSASRIEPF 309
Query: 274 AGALESHKITTSIRQTRGLDASAACGQLR 302
A L + +R+ +G D AACGQLR
Sbjct: 310 AKILRELGMEVEVRREKGTDIDAACGQLR 338
>gi|422941346|ref|ZP_16967816.1| cfr family radical SAM enzyme, partial [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339889541|gb|EGQ78830.1| cfr family radical SAM enzyme [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 349
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 150/277 (54%), Gaps = 54/277 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
V+ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 VSKIDRTEKFLFELEDKGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCL-NKD-VQ 190
+ RNLS EI+ QV +E + + + N+VFMGMGEP+LN+ ++ +A + NK+ +
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNKNGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQL 301
K + F L++ K+ ++RQ +G D ACGQL
Sbjct: 313 SVKKIDKFYNYLKNVRKVNVTLRQEKGSDIDGACGQL 349
>gi|343085190|ref|YP_004774485.1| ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
gi|342353724|gb|AEL26254.1| Ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
Length = 349
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 154/303 (50%), Gaps = 59/303 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ +S R L+E +T+ + + + + DGT+K +KL DN ++E+V IP R+
Sbjct: 52 ISKSTREILKE-NFTINHILVDQFQRSTDGTIKNAVKLYDNNIVESVLIPT-----SKRI 105
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGM 168
TACVSSQVGC L C+FCAT + RNL+ EI QV+AI+E F +TN+VFMGM
Sbjct: 106 TACVSSQVGCSLDCNFCATARLKRMRNLNPDEIYDQVVAIQEEASLYFDRPLTNIVFMGM 165
Query: 169 GEPMLNLKSVLEAHR--CLNKDVQIGQRMITISTVGVPNTIKKLAS--YKLQSTLAIRSA 224
GEP+LN ++VL A C + + I + IT+STVG+ I+KLA K L++ SA
Sbjct: 166 GEPLLNYQNVLSAIEKICSPEGLGISPKRITLSTVGIGKMIRKLADDEVKFNLALSLHSA 225
Query: 225 -------------------------------------------GVNDQVEHAVELAELLH 241
G+ND +HA LA+
Sbjct: 226 INETRTRLMPINETNTVEDLAMALKYWYSKTKRKVTYEYVIWDGINDDEKHARALAKFCK 285
Query: 242 EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
VN+I +NPI+ ++++ + + + LE I ++R++RG D AACGQL
Sbjct: 286 HI--PSKVNIIQYNPIDEGEFRQASQDKIDLYLSILEGSGIIANVRKSRGQDIDAACGQL 343
Query: 302 RNE 304
N+
Sbjct: 344 ANK 346
>gi|86140644|ref|ZP_01059203.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
MED217]
gi|85832586|gb|EAQ51035.1| hypothetical protein MED217_15870 [Leeuwenhoekiella blandensis
MED217]
Length = 347
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 148/288 (51%), Gaps = 54/288 (18%)
Query: 66 WTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLR 125
+ + + + + ++DGT+K +KL DN +E+V IP R+TACVSSQVGC L
Sbjct: 63 FVINHIKVDQMQRSSDGTIKNAVKLHDNLTVESVLIPT-----ASRITACVSSQVGCSLN 117
Query: 126 CSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHR-VTNVVFMGMGEPMLNLKSVLEA 181
C FCAT + RNL+ EI QV+AI++ ++ +R ++N+VFMGMGEP++N K+V+++
Sbjct: 118 CKFCATARLKRMRNLNPDEIFDQVVAIDQQSRLYHNRPLSNIVFMGMGEPLMNYKNVVKS 177
Query: 182 HRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----- 234
+ +G + IT+ST GVP IKK+A +++ LA+ D V +
Sbjct: 178 IEKITDPEGLGMSPKRITVSTSGVPKIIKKMADDEVKFNLAVSLHSALDDVRTDIMPFNE 237
Query: 235 -----ELAELLHEWG--------------RG-------------------HHVNLIPFNP 256
EL E L W RG VNLI +NP
Sbjct: 238 QMPLQELKEALQYWYVKTKKRITYEYVVWRGINDQDKDIEALIDFCLAVPSKVNLIEYNP 297
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I+ +Q+ A+ + LE IT ++R++RG D AACGQL N+
Sbjct: 298 IDDGQFQQADPLAIDRYVAKLEDRGITVTVRRSRGKDIDAACGQLANK 345
>gi|260494797|ref|ZP_05814927.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
gi|260197959|gb|EEW95476.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
3_1_33]
Length = 358
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
++ D T K L +LED IETV + +D K +R T C+SSQVGCP++CSFCATG+ G
Sbjct: 75 ISKIDRTEKFLFELEDKGTIETVLLRHKDSKNKEIRNTLCISSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ QV +E + + + N+VFMGMGEP+LN+ ++ +A ++ + +
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLSKALSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ ++ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|163753003|ref|ZP_02160127.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
gi|161326735|gb|EDP98060.1| hypothetical protein KAOT1_12622 [Kordia algicida OT-1]
Length = 347
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + GA + + R L+E + + + + + + DGT+K ++
Sbjct: 30 RGNQVYEWLWQKGAHSFDDMTN-ISKETRKMLEE-NFVINHIRVDKMQRSNDGTIKNAVR 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP R TACVSSQVGC L C FCAT + RNL+ EI QV
Sbjct: 88 LHDGLVVESVLIPT-----STRTTACVSSQVGCSLDCKFCATARLKRMRNLNPDEIYDQV 142
Query: 150 LAIE---EIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
+AI+ ++ R ++N+VFMGMGEP++N +VL+A + + +G + IT+ST GV
Sbjct: 143 VAIDRESRLYHGRPLSNIVFMGMGEPLMNYNNVLKAIEKITSEEGLGMSPKRITVSTSGV 202
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
P IKK+A +++ LA+ D+V + +L E L W
Sbjct: 203 PKMIKKMADDEVKFKLAVSLHSAIDEVRTEIMPFNEHFPLKDLKEALTYWYDKTKNKITY 262
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ +Q+ KA+ + +LE +
Sbjct: 263 EYVVWDGINDQQKDINALVKFCKDVPSKVNLIEYNPIDDGQFQQASNKAIDRYVDSLEQN 322
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
IT ++R++RG D AACGQL N+
Sbjct: 323 GITVTVRRSRGKDIDAACGQLANK 346
>gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
Length = 361
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 155/311 (49%), Gaps = 63/311 (20%)
Query: 50 PRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP 109
P+P+ + A + + L A+DGTVK L +L DN +IETV + E G
Sbjct: 55 PKPLIEKL-----SAAFVINPLKQMVVQEASDGTVKYLFQLPDNHMIETV--LMRQEYG- 106
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVV 164
++ CV++QVGC + C+FCA+G R+L++ EIV Q++ ++ F RV++VV
Sbjct: 107 --MSVCVTTQVGCNIGCTFCASGLLKKQRDLTAGEIVAQIMLVQHYFDERNEGERVSHVV 164
Query: 165 FMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI- 221
MG+GEP N +V+ + +N K + IG R IT+ST G+ + IK+ A LQ LAI
Sbjct: 165 VMGIGEPFDNYDNVMHFLQIINDPKGLAIGARHITVSTSGLAHKIKEFAENGLQVNLAIS 224
Query: 222 ----------------RS----------------------------AGVNDQVEHAVELA 237
RS VND+ EHA +LA
Sbjct: 225 LHAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNRRITFEYIMLDHVNDRPEHARQLA 284
Query: 238 ELLHEWGRGHHVNLIPFNPIEGSD-YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASA 296
LL + + +VNLIP+NP+ D Y R K VLAF L+ + I IR+ G D A
Sbjct: 285 ALLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKNGINCVIRKEHGTDIDA 344
Query: 297 ACGQLRNEFQK 307
ACGQLR++ K
Sbjct: 345 ACGQLRSKQMK 355
>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
Length = 342
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 163/335 (48%), Gaps = 58/335 (17%)
Query: 22 FFFFTCPSRGRQRAPWHVRAGASKTR-RRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTA 79
FF SR R + + G T + + ++ R+ L+E + + +L + R V+
Sbjct: 15 FFVNIGESRYRAKQIYKWIYGKKITDFDKMTDISKNLRSKLKEIAY-ISQLKVEARRVSE 73
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
D TVK L LED +IE V I K TACVS+QVGC +RCSFCA+ GG R+
Sbjct: 74 IDNTVKYLFLLEDKNIIEGVAI-----KYRFGNTACVSTQVGCNMRCSFCASAIGGKVRD 128
Query: 140 LSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMIT 197
L + E+V QV++I+ + +++N+V MG GEP N V++ + +N + IG R IT
Sbjct: 129 LKASEMVDQVMSIDSDY-GKISNIVLMGSGEPFDNYDEVMKFIKIVNNPYGLGIGSRHIT 187
Query: 198 ISTVGVPNTIKKLASYKLQSTLAIR----------------------------------- 222
IST G+ I + A KLQ L+I
Sbjct: 188 ISTCGIIPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEELMKACKYYIEKT 247
Query: 223 ----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
GVND+ EHA +L +LL G HVNLIP N ++ +++ + V+
Sbjct: 248 RRRITFEYSLIEGVNDKKEHAYQLVDLLK--GMLCHVNLIPINYVKEIGFKKAANEKVMM 305
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
F +E+ I+ ++R+ G D AACGQLR ++ K
Sbjct: 306 FKKIIENAGISCTVRRELGSDIEAACGQLRRKYLK 340
>gi|449146973|ref|ZP_21777724.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
gi|449077467|gb|EMB48450.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
Length = 373
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + ++++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAEL+ G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|406676649|ref|ZP_11083834.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
gi|423206308|ref|ZP_17192864.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|423209225|ref|ZP_17195779.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|404617083|gb|EKB14019.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|404621860|gb|EKB18725.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|404624963|gb|EKB21780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
Length = 367
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 139/280 (49%), Gaps = 59/280 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
I R +ADGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T
Sbjct: 70 ISREQRSADGTIKWALQVGDQE-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTA 123
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
+ GF+RNL EI+GQV + K +TNVV MGMGEP+LNL +V+ A R + D
Sbjct: 124 QQGFNRNLKVSEIIGQVWRAARVVGGKRPITNVVMMGMGEPLLNLANVVPAMRLMMDDYG 183
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +TIST GV + KL Y ++ LA
Sbjct: 184 FGISKRRVTISTSGVVPALDKLGDQIDVALAISLHAPNDKLRSEIMPINDKYNIEEFLAG 243
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ +ND ++HA ELA++L + +NLIPFNP G+
Sbjct: 244 VRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD--TPSKINLIPFNPFPGNP 301
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y +P + F+ L + T +R+TRG D AACGQL
Sbjct: 302 YGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQL 341
>gi|334143334|ref|YP_004536490.1| ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
gi|333964245|gb|AEG31011.1| Ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
Length = 385
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 154/329 (46%), Gaps = 65/329 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R +Q W + G S + +S R L++ W R P I + DGT+K
Sbjct: 38 PFRAKQVMKWIHQMGVSDFDLMTN-ISKSLREKLKQNAWI--RSPKIIAEQISDDGTIKW 94
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
LI+++ IETV IP D R T C+SSQVGC L CSFCAT + GF+RNL + EI+
Sbjct: 95 LIEVDQQNSIETVFIPEAD-----RGTLCISSQVGCALDCSFCATAQQGFNRNLENWEII 149
Query: 147 GQVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
Q+ + + + +++NVVFMGMGEP+LN+ V + L D G +R +TI
Sbjct: 150 AQMWVVNKALGANPKAERKISNVVFMGMGEPLLNVTHVFPVAKLLMDDNAYGLSKRRVTI 209
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTL-AIRS------- 223
ST GV I KL + Y L+ + A+R
Sbjct: 210 STAGVVPAIDKLKAEVDVSLAISLHAPNNALRDELVPVNKKYPLEVLMPALRRYVADGHA 269
Query: 224 -----------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
VND++EHA +L LL + VNLIPFNP + Y R V
Sbjct: 270 KKHITVEYVMLDQVNDEIEHAHQLVGLLGDL--VCKVNLIPFNPFPNTPYLRSSNNRVHR 327
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQL 301
F L I +IR+TRG D AACGQL
Sbjct: 328 FQRVLHEAGINCTIRKTRGDDIDAACGQL 356
>gi|319953716|ref|YP_004164983.1| 23S rRNA m(2)a-2503 methyltransferase [Cellulophaga algicola DSM
14237]
gi|319422376|gb|ADV49485.1| 23S rRNA m(2)A-2503 methyltransferase [Cellulophaga algicola DSM
14237]
Length = 347
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 159/334 (47%), Gaps = 59/334 (17%)
Query: 23 FFFTCPS---RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FF T RG Q W + GA ++ D+ E + + + + +
Sbjct: 20 FFVTNGDKAFRGNQVYEWLWQKGAHSFEAMTNVSKET--RDMLEQNFVINHIKVDVMQRS 77
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT+K ++L D+ ++E+V IP + R TACVSSQVGC L C FCAT + RN
Sbjct: 78 NDGTIKNAVRLHDDLIVESVLIPTK-----TRSTACVSSQVGCSLDCKFCATSRLKRMRN 132
Query: 140 LSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ-- 193
L+ EI QV+AI+ F ++N+VFMGMGEP++N +VL+A + +G
Sbjct: 133 LNPDEIYDQVVAIDNESRLYFNRPLSNIVFMGMGEPLMNYNNVLKAIDMITSPEGLGMSP 192
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW 243
+ I +ST GVP I+K+A +++ LA+ D++ ++ +L + L W
Sbjct: 193 KRIVVSTSGVPKMIRKMADDEVKFKLAVSLHSAIDEIRTSIMPFNANFTLTDLRQSLQYW 252
Query: 244 G--------------RG-------------------HHVNLIPFNPIEGSDYQRPYKKAV 270
+G VNLI +NPI+ ++Q+ A+
Sbjct: 253 YAKTRSRITYEYVIWKGINDSQKDVDALVDFCKFAPSKVNLIEYNPIDDGEFQQASNAAI 312
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ LE H I ++R++RG D AACGQL N+
Sbjct: 313 DMYVNTLEQHNIAVTVRRSRGKDIDAACGQLANK 346
>gi|406947137|gb|EKD78125.1| hypothetical protein ACD_42C00034G0001 [uncultured bacterium]
Length = 368
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 144/300 (48%), Gaps = 59/300 (19%)
Query: 57 FRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACV 116
FR L+ A + L T++DGT K L +L D IETV IP E +G T CV
Sbjct: 55 FREKLK-AETCITLLETISDQTSSDGTRKFLFRLYDGNAIETVFIP-EKTRG----TLCV 108
Query: 117 SSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPM 172
SSQVGC L CSFC+TGK GF+RNLS EI+GQV + + K + +TNVV MGMGEP+
Sbjct: 109 SSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQVFLVRDKLKDKPRLTITNVVMMGMGEPL 168
Query: 173 LNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKL-------------------- 210
LN V+EA + D+ G + +T+ST GV + +L
Sbjct: 169 LNYPPVIEAMDLMTHDLAYGLSKYRVTLSTSGVVPMMLQLKKDSPVSLAVSLHAPTNELR 228
Query: 211 -------ASYKLQSTL------------------AIRSAGVNDQVEHAVELAELLHEWGR 245
Y L+ + + +ND + HA +L LL
Sbjct: 229 EQLVPINKKYPLEVLMPVCRNYFPADSKRCIVFEYVMLKNINDSLTHAKQLIRLLDNM-- 286
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
VNLIPFNP ++Y + +LAF L + I T IR+TRG D ACGQL +F
Sbjct: 287 PCKVNLIPFNPFPKTNYVCSDMETILAFQNRLTAAGIKTWIRKTRGEDIDGACGQLAGDF 346
>gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
lettingae TMO]
gi|205829915|sp|A8F8C2.1|RLMN_THELT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO]
Length = 343
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 142/275 (51%), Gaps = 55/275 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V++ D T K L +L D IE+V + E TAC+S+Q+GCP++CSFCATG+
Sbjct: 68 KRVSSIDKTTKYLYELSDGNTIESVLLFHEGYA-----TACISTQIGCPVKCSFCATGQS 122
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIG 192
GF RNL + EIV Q+LAIE+ K V N+V+MGMGEP+LN +V+++ + L K IG
Sbjct: 123 GFVRNLDAGEIVSQILAIEKDSKQTVRNIVYMGMGEPLLNYDNVIKSIKILIDKKTKNIG 182
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RSAGV--------- 226
R +T+STVG+P I KL+ +L LAI R +
Sbjct: 183 IRRVTLSTVGIPEMILKLSEERLDLNLAISLHASTNEKRDQIIPINRKYSIQEIINAAKN 242
Query: 227 -------------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
ND E A +LA+LL+ G VNLIP N S++++P K
Sbjct: 243 YQERSDRRLTIEYILIKEFNDFDEDARKLAKLLN--GLKVFVNLIPVNST-FSNFEKPAK 299
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ F L + I IR +G D AACGQLR
Sbjct: 300 WKINRFKEILINSGIEAEIRYEKGADIEAACGQLR 334
>gi|422643971|ref|ZP_16707110.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 382
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y LQ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLQMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +NDQVEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
Length = 357
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 132/270 (48%), Gaps = 54/270 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A D T K L++L D IETV IP ED R T C+SSQVGC L CSFCATG G +R
Sbjct: 72 ARDETRKWLLRLPDGNAIETVFIPEED-----RGTLCISSQVGCSLACSFCATGAQGLNR 126
Query: 139 NLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRM 195
NLSSHEIV QV +A + +TNVVFMGMGEP+LNLK V+ R L D G R
Sbjct: 127 NLSSHEIVAQVRVARRHLGLDAITNVVFMGMGEPLLNLKQVIPVIRLLLDDFAYGLSSRR 186
Query: 196 ITISTVGVPNTIKKLAS---------------------------YKLQSTLA-------- 220
+T+ST GV +++L Y L +A
Sbjct: 187 VTVSTAGVLPGLEQLGRETPVNLAISLHASRNDLRDELVPINRHYPLAQLMAACRSYPLP 246
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ GVND A L LL G VNLIPFNP GS Y+R +
Sbjct: 247 PRRRITFEYVMLDGVNDSDADARALVRLLR--GLPALVNLIPFNPFPGSPYRRSSLARID 304
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
AF + S I T R+ RG D +AACGQL
Sbjct: 305 AFREIVLSAGIMTVTRRPRGDDIAAACGQL 334
>gi|344203307|ref|YP_004788450.1| ribosomal RNA large subunit methyltransferase N [Muricauda
ruestringensis DSM 13258]
gi|343955229|gb|AEM71028.1| Ribosomal RNA large subunit methyltransferase N [Muricauda
ruestringensis DSM 13258]
Length = 346
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 147/293 (50%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
+ E + + + + + ++DGT+K ++L D ++E+V IP E R TACVSSQV
Sbjct: 58 MLEDNFVINHIRVDQMQRSSDGTIKNAVRLHDGLIVESVLIPTE-----TRTTACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C FCAT + RNL+ EI QV+AI+ F ++N+VFMGMGEP++N
Sbjct: 113 GCSLDCRFCATARLKRMRNLNPDEIYDQVVAIDNESRLYFDRPLSNIVFMGMGEPLMNYN 172
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+VL+A + +G + I +ST GVP IKK+A +++ LA+ D+V ++
Sbjct: 173 NVLKAIEKITSPEGLGMSPKRIIVSTSGVPKIIKKMADEEVKFGLAVSLHSAIDEVRTSI 232
Query: 235 ----------ELAELLHEWGRG---------------------------------HHVNL 251
+L E L W VN+
Sbjct: 233 MPFNATFPLKDLREALEYWYSKTKNRITYEYVVWKGINDTQEAVDALVKFCKFAPSKVNI 292
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ ++Q+ KAV + LE + IT ++R++RG D AACGQL N+
Sbjct: 293 IEYNPIDDGEFQQASSKAVEMYQNTLERNGITVTVRRSRGKDIDAACGQLANK 345
>gi|322435186|ref|YP_004217398.1| radical SAM enzyme, Cfr family [Granulicella tundricola MP5ACTX9]
gi|321162913|gb|ADW68618.1| radical SAM enzyme, Cfr family [Granulicella tundricola MP5ACTX9]
Length = 383
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 150/317 (47%), Gaps = 62/317 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVED------- 105
+P + R L GW VG + +T + DGT + L++L D +ETV +P D
Sbjct: 65 LPIAVRERLAAEGWVVGLPELAQTAKSVDGTERYLVRLADGETVETVWMPGGDGAELQEG 124
Query: 106 EKGP--MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE-----IFKH 158
++GP R T CVSSQVGC + C FC T K G RNL++ EI GQV A+ I K
Sbjct: 125 DEGPGYKRATICVSSQVGCAVNCQFCLTAKLGMRRNLTAGEIAGQVTAVLNRQGIVIGKD 184
Query: 159 RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQST 218
R+ N+VFMGMGEP LN S ++A R L ++ I +T+ST G+ I++ A ++
Sbjct: 185 RI-NLVFMGMGEPFLNYDSFMDAVRLLVNEMGIPASRMTVSTSGIEPAIRRFALEPIRPN 243
Query: 219 LAIR---------------------------------------------SAGVNDQVEHA 233
LA+ GVNDQ EHA
Sbjct: 244 LALSLNASNDVVRESIMPITRKWDIEALLDAVKSVPLRRQEYVTFEYVLLGGVNDQPEHA 303
Query: 234 VELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293
E+ LL G VNLI +NP G Y++P ++A AF L + R+ RG D
Sbjct: 304 REVLALLK--GMQAKVNLIVWNPGPGVAYEQPSQEAADAFHKMLVVGGVPAFTRRPRGRD 361
Query: 294 ASAACGQLRNEFQKSPL 310
AACGQL+ ++ L
Sbjct: 362 IYAACGQLKRTVEEPGL 378
>gi|375013343|ref|YP_004990331.1| 2-vinyl bacteriochlorophyllide hydratase [Owenweeksia hongkongensis
DSM 17368]
gi|359349267|gb|AEV33686.1| 23S rRNA m2A2503 methyltransferase [Owenweeksia hongkongensis DSM
17368]
Length = 352
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GA K+ + + R +Q+ + + + + + DGT+K ++
Sbjct: 28 RATQVFEWLWKKGA-KSFEDMTNLSLTLREKMQQE-FVINHIRVDEMQRSNDGTIKNAVR 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +++E+V IP + R+TACVSSQVGC L C FCATG+ RNL++ EI QV
Sbjct: 86 LYDGKVVESVLIPTDK-----RITACVSSQVGCSLDCHFCATGQLKRMRNLNADEIYDQV 140
Query: 150 LAI----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGV 203
+A+ E F +TN+VFMGMGEP++N K+VL+A + + + + R IT+STVG+
Sbjct: 141 VAVMNEAENFFDRPLTNIVFMGMGEPLMNYKNVLDAIEKITSPEGLNMAPRRITVSTVGL 200
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
IKKLA +++ LA+ D V + +LAE L W +
Sbjct: 201 AKMIKKLADDEVKFNLALSLHSARDVVRDTIMPINLKNPVADLAEALKYWYQKTKKRVTY 260
Query: 247 ----------------------HH----VNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
+H VNLI +NP + + + ++ + LE
Sbjct: 261 EYVVWKGVNDQPEDIAALVKFCNHIPCKVNLIEYNPTDDERFVKASEEVYNQYVNELEKA 320
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
I IR++RG D AACGQL N+
Sbjct: 321 GIVAKIRRSRGKDIDAACGQLANK 344
>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
Length = 373
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + ++++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAEL+ G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|335047110|ref|ZP_08540131.1| 23S rRNA m2A2503 methyltransferase [Parvimonas sp. oral taxon 110
str. F0139]
gi|333760918|gb|EGL38473.1| 23S rRNA m2A2503 methyltransferase [Parvimonas sp. oral taxon 110
str. F0139]
Length = 348
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 142/299 (47%), Gaps = 54/299 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ +P+ L+E G+ + + D T K LIKL DNR+IETV +
Sbjct: 49 KQLPKVLIEKLKEIGYINTSSIYTKYESKLDNTKKYLIKLYDNRIIETVFMDY-----GS 103
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
T C+SSQVGC + C+FCA+ K F RNL+S E++ Q+ IE + NVV MG+GE
Sbjct: 104 YCTVCISSQVGCRMGCTFCASTKENFKRNLTSAEMLNQIYLIENDLNLTINNVVIMGIGE 163
Query: 171 PMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
P+ N +V+ + +N K + R ITIST G+ + I KLA KL TL I
Sbjct: 164 PLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPVTLTISLHNPFQ 223
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
G ND +HA+EL +L
Sbjct: 224 NERREIMPISDNFSIDEILKACKYYFDKTSRRVSFEYTLIKGQNDSKKHALELKNILK-- 281
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G H+N+IP N I+ D + P K + +F LE++ I +IR+ +G D + ACGQLR
Sbjct: 282 GLNCHINIIPLNSIKEFDGEAPSTKYIYSFKSMLENYGINATIRKKQGDDINGACGQLR 340
>gi|302039009|ref|YP_003799331.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrospira defluvii]
gi|300607073|emb|CBK43406.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrospira defluvii]
Length = 366
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 140/283 (49%), Gaps = 56/283 (19%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+ R + ++ DGT KL++ L D +E V IP ED RLT C+S+QVGC L C
Sbjct: 73 IERTSAVQIFSSQDGTKKLVLTLADGNQVECVLIPDED-----RLTLCLSTQVGCTLDCG 127
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFK--HRVTNVVFMGMGEPMLNLKSVLEA-HRC 184
FC TG G RNL +HEI+ QVL ++ + R+TN+VFMGMGEP+ NL +V +A R
Sbjct: 128 FCLTGTLGLQRNLRAHEIIDQVLLAQDHLQEGQRLTNLVFMGMGEPLANLDAVADAVTRL 187
Query: 185 LNKDVQIG--QRMITISTVGVPNTIKKLASYKLQ-------STLAIRS------------ 223
N+ +G R ITIST G+ + IK +A K+ +T A+R
Sbjct: 188 TNQTWGLGFSGRRITISTAGLASRIKDVAPLKVNLAISLNATTDALRDQLMPAANRLHSL 247
Query: 224 -------------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
A VND+ E A L +LL G VNLI FNP
Sbjct: 248 DALLAACRAYPLADRDRLTFEYVLLADVNDRTEDAARLVKLLR--GLRCKVNLIAFNPFP 305
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G+ Y+RP A+ F L + +R++RG D ACGQL
Sbjct: 306 GNPYRRPSDAAIDTFQDTLRRGHVDVYLRRSRGRDVLGACGQL 348
>gi|237750344|ref|ZP_04580824.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
ATCC 43879]
gi|229373874|gb|EEO24265.1| ribosomal RNA large subunit methyltransferase N [Helicobacter bilis
ATCC 43879]
Length = 366
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 162/331 (48%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + S + +P++ + L++ ++ L R + DGT K L +
Sbjct: 34 RAKQIYNWLYKHYVSNIESM-KNIPKNLQEILKQT-FSFPNLKPIRIEESGDGTKKYLFQ 91
Query: 90 LEDNRLIETVGIPVEDE--------KGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
D E+V I + ++ K + T CVSSQVGC + C+FC+T KGGF RNLS
Sbjct: 92 TSDGATFESVFIKMREKEYDENNRVKKSEKYTFCVSSQVGCRVGCAFCSTAKGGFVRNLS 151
Query: 142 SHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMI 196
+ EIV QV+A++ + H+ N+VFMGMGEP+ NL +V +A + L+ + + I R
Sbjct: 152 AGEIVEQVVALKRDNNLSAHKSINIVFMGMGEPLDNLNNVAKAIKILSHEEGLCIATRRQ 211
Query: 197 TISTVGVPNTIKKLASYKLQSTLA---------IRS------------------------ 223
TIST G+ I+KL + L +A +RS
Sbjct: 212 TISTSGIAPQIEKLGAMNLGVQIALSLHAVDDSLRSRLIPMNKVYNIERVLQALKNFPLD 271
Query: 224 ------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ND + A +L +LLH G VNLIPFNP S++QRP +
Sbjct: 272 TRKRILFEYLVIKDINDDLASAKKLVKLLH--GFRAKVNLIPFNPHAESEFQRPCIDKMQ 329
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
FA L I +IR+++G+D SAACGQLR
Sbjct: 330 GFADYLYKRGIVATIRESKGIDISAACGQLR 360
>gi|395235042|ref|ZP_10413262.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
gi|394730327|gb|EJF30185.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
Length = 387
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 150/309 (48%), Gaps = 67/309 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + +ADGT+K IK+ D +L+ETV IP ED R
Sbjct: 66 INKVLRNKLKEIAEI--RAPEVAEEQRSADGTIKWAIKIAD-QLVETVYIPEED-----R 117
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I + +TNVV
Sbjct: 118 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKKTGVRPITNVV 177
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 178 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 237
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA +
Sbjct: 238 HAPTDDIRDEIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHVNDGTEHAHQ 297
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAE L + +NLIP+NP G+ Y R + F+ L S+ TT +R+TRG D
Sbjct: 298 LAECLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 355
Query: 296 AACGQLRNE 304
AACGQL E
Sbjct: 356 AACGQLAGE 364
>gi|423138477|ref|ZP_17126120.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371957842|gb|EHO75585.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 358
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
++ D T K L +LED IETV + +D K +R T CVSSQVGCP++CSFCATG+ G
Sbjct: 75 ISKIDRTEKFLFELEDKGTIETVLLRHKDSKNKEIRNTLCVSSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ QV +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + +
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ ++ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|424808315|ref|ZP_18233717.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|342324852|gb|EGU20633.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
Length = 373
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + ++++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAEL+ G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|88799903|ref|ZP_01115475.1| radical SAM enzyme, Cfr family protein [Reinekea blandensis MED297]
gi|88777334|gb|EAR08537.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
Length = 386
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 142/278 (51%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K ++K+ +ETV IP ED++G T CVSSQ+GC L CSFC+TGK GF+R
Sbjct: 79 SKDGTRKWVMKMPGGSAVETVYIP-EDDRG----TLCVSSQIGCALDCSFCSTGKQGFNR 133
Query: 139 NLSSHEIVGQVLAI----EEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
+LS+ EI+GQ+ +E K R VTNVV MGMGEP+LN +V+EA + +D
Sbjct: 134 DLSAAEIIGQLWVAARSWDEPGKKRERHVTNVVMMGMGEPLLNYDNVVEAMNLMMEDNAY 193
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV I LA Y L+ TL A+
Sbjct: 194 GLSKRRVTLSTSGVVPRILDLAEETDVSMALSLHAPNDALRNELVPLNKRYGLKQTLDAV 253
Query: 222 RS------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ VND+ EHA EL +LL E +NLIPFNP S Y+
Sbjct: 254 NTYFARLPDKRVPTIEYTLINEVNDKPEHAHELVDLLRE--TPCKINLIPFNPFPNSGYE 311
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP + F L ++R+TRG D AACGQL
Sbjct: 312 RPSNNRIHRFKDILHQAGYNVTVRKTRGDDIDAACGQL 349
>gi|343520695|ref|ZP_08757664.1| 23S rRNA m2A2503 methyltransferase [Parvimonas sp. oral taxon 393
str. F0440]
gi|343397653|gb|EGV10187.1| 23S rRNA m2A2503 methyltransferase [Parvimonas sp. oral taxon 393
str. F0440]
Length = 349
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 141/299 (47%), Gaps = 54/299 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ +P+ L+E G+ + + D T K LIKL DNR+IETV +
Sbjct: 49 KQLPKVLIEKLKEIGYINTSSIYTKYESKLDNTKKYLIKLFDNRIIETVFMDY-----GS 103
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
T C+SSQVGC + C+FCA+ K F RNL+S E++ Q+ IE + NVV MG+GE
Sbjct: 104 YCTVCISSQVGCRMGCTFCASTKENFKRNLTSAEMLNQIYLIENDLNLTINNVVIMGIGE 163
Query: 171 PMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
P+ N +V+ + +N K + R ITIST G+ + I KLA KL TL I
Sbjct: 164 PLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPITLTISLHNPFQ 223
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
G ND EHA+EL +L
Sbjct: 224 KERREIMPISDNFSIDEILKACKYYFDKTSRRVSFEYTIIKGQNDSREHALELKNILK-- 281
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G H+N+IP N I+ D + P K + F LE++ I +IR+ +G D + ACGQLR
Sbjct: 282 GLNCHINIIPLNSIKEFDGEAPSTKYIYVFKSMLENYGINATIRKKQGDDINGACGQLR 340
>gi|420149031|ref|ZP_14656213.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
335 str. F0486]
gi|394754257|gb|EJF37690.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
335 str. F0486]
Length = 350
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 155/326 (47%), Gaps = 56/326 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RG Q W + G T +P++ R L E +++ + + + DGT+K
Sbjct: 26 PFRGNQVYEWLWQKGVH-TFEEMTSLPKATREMLSEH-FSINHIKVDVMQRSNDGTIKNA 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI
Sbjct: 84 VRLHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFD 138
Query: 148 QVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTV 201
QV I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST
Sbjct: 139 QVKVIDEQSLAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTS 198
Query: 202 GVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG----- 246
G+P IKK+A +++ LA+ V + EL E L W +
Sbjct: 199 GIPKLIKKMADDEVKFKLAVSLHSAIGSVRTGIMPFNEQFPLEELREALAYWYQKTKNRI 258
Query: 247 ----------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VNLI +NPI+ D+Q+ KA+ + LE
Sbjct: 259 TYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGDFQQADPKALELYQTMLE 318
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
IT ++R +RG D AACGQL N+
Sbjct: 319 EAGITVTVRHSRGKDIDAACGQLANK 344
>gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
Length = 373
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + ++++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAEL+ G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
loihiensis L2TR]
gi|81363032|sp|Q5QYC0.1|RLMN_IDILO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
Length = 378
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 137/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K + L D + +ETV IP D R T CVSSQVGC L C+FC+TG GF+R
Sbjct: 79 SSDGTIKFAMTLFDGQDVETVWIPEGD-----RATLCVSSQVGCALECTFCSTGAQGFNR 133
Query: 139 NLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + ++ VTNVV MGMGEP+LNL +V+ A + D+
Sbjct: 134 NLSVAEIIGQVWRVNQLLGAYGKTGIKPVTNVVMMGMGEPLLNLNNVVPAMELMLDDLGF 193
Query: 192 G--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA-- 220
G +R +T+ST GV ++KL Y ++ LA
Sbjct: 194 GLSKRRVTLSTSGVVPALEKLRERIDVMLAISLHAPDDELRNEIVPINKKYNIEEFLASS 253
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ VND + A LA+ L + +NLIPFNP GSDY
Sbjct: 254 RRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALAKTLKD--TPSKINLIPFNPFPGSDYG 311
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + FA L + +T +R+TRG D AACGQL
Sbjct: 312 RSSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACGQL 349
>gi|410612514|ref|ZP_11323591.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
psychrophila 170]
gi|410167855|dbj|GAC37480.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
psychrophila 170]
Length = 380
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 159/350 (45%), Gaps = 65/350 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + G + + + ++ R LQ A V I TAADGT+K
Sbjct: 34 PFRAEQVMKWIYQQGVADFEQMSN-LNKALRAKLQ-AKCEVKAPEIAYQKTAADGTIKFA 91
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+KLE + +ETV IP D R T CVSSQVGC L C+FC+TG+ GF+RNL EI+G
Sbjct: 92 LKLEGGQEVETVWIPDGD-----RATLCVSSQVGCALECTFCSTGQQGFNRNLKVSEIIG 146
Query: 148 QVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + + K +TNVV MGMGEP+LN+K+V+ A + D+ G +R +T+
Sbjct: 147 QVWRVATTIGLNNDTAKRPITNVVMMGMGEPLLNVKNVVPAMELMLDDLAFGLSKRRVTL 206
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + L Y ++ LA
Sbjct: 207 STSGVVPALDMLGDQIDVALAISLHAPDNALRDVLVPVNKKYPIEVFLASVRRYLAKSNA 266
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A LA++L + +NLIPFNP GS Y +
Sbjct: 267 NQGKVTVEYVMLNGINDSTDQAHALAKVLAD--TPCKINLIPFNPYPGSPYTCSSNSRID 324
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSES 321
FA L + + +R+TRG D AACGQL E R+ ES
Sbjct: 325 RFAKVLMEYGLIVVVRRTRGDDIDAACGQLVGEVVDRTKRVLKKQLKGES 374
>gi|410637360|ref|ZP_11347940.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
gi|410142983|dbj|GAC15145.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
Length = 378
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 154/330 (46%), Gaps = 65/330 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + G + + + +S R L E + I A DGT+K
Sbjct: 31 PFRADQLMKWIYQQGETDFEKMTN-LNKSLRAKLVER-CEIKAPEIAYQQNATDGTIKFA 88
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+KLE + +ETV IP D R T CVSSQVGC L C+FC+T + GF+RNL+ EI+G
Sbjct: 89 LKLEGGQEVETVWIPEAD-----RATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIIG 143
Query: 148 QVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + ++ K +TNVV MGMGEP+LNLK V+ A + D+ G +R +T+
Sbjct: 144 QVWRVATTIGLSKDTAKRPITNVVMMGMGEPLLNLKHVVPAMDIMLDDLGFGLSKRRVTL 203
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + KL Y ++ LA
Sbjct: 204 STSGVVPALDKLGDMIDVALAISLHAPTNDLRDEIVPVNKKYPIEEFLAGVRRYLAKSNA 263
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A +LA++L E +NLIPFNP GS Y +
Sbjct: 264 NQGKVTVEYVMLNGINDSTDQAHQLAKVLKE--TPCKINLIPFNPYPGSPYTCSSNSRID 321
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
F+ L + IT +R+TRG D AACGQL
Sbjct: 322 RFSKVLMEYGITVVVRKTRGDDIDAACGQL 351
>gi|258545517|ref|ZP_05705751.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
gi|258519217|gb|EEV88076.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
Length = 367
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 146/298 (48%), Gaps = 63/298 (21%)
Query: 70 RLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSF 128
R P I TA+DGT K + + + IE V IP ED++G T C+SSQ GC L C F
Sbjct: 65 RFPTIIADKTASDGTRKWIFRYDCGNSIEAVFIP-EDDRG----TLCISSQAGCALACPF 119
Query: 129 CATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEA 181
C+TG GF+RNL++ EI+ QV ++I VTNVV MGMGEP++N +VL A
Sbjct: 120 CSTGHAGFNRNLTTGEIIVQVWLAKDILNCDRHGNNRVVTNVVLMGMGEPLVNFNNVLPA 179
Query: 182 HRCLNKDVQIG--QRMITISTVGVPNTIKKL---------------------------AS 212
R + D G +R +T+ST G+ I L A
Sbjct: 180 TRLMMDDHAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVSLHAPNDELRNQIVPVNAR 239
Query: 213 YKLQSTLA-----IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIP 253
Y L + L +R G VND +EHA +LAELL G +NLIP
Sbjct: 240 YGLAALLDACHQYVRHNGQHGGVTWEYVMLRDVNDSLEHARQLAELLR--GIPGKINLIP 297
Query: 254 FNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
FN GS YQ + +LAF L + +IR+TRG D AACGQL +F+ +R
Sbjct: 298 FNAFPGSRYQCSRRSDILAFQRYLTENGYVATIRKTRGEDIDAACGQLVGQFKDRLIR 355
>gi|420491731|ref|ZP_14990307.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-15]
gi|420525497|ref|ZP_15023900.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-15b]
gi|393108426|gb|EJC08960.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-15]
gi|393133518|gb|EJC33934.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-15b]
Length = 357
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 159/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIVHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA KL LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKKLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|28210911|ref|NP_781855.1| ribosomal RNA large subunit methyltransferase N [Clostridium tetani
E88]
gi|75542526|sp|Q895P8.1|RLMN_CLOTE RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|28203350|gb|AAO35792.1| florfenicol resistance protein [Clostridium tetani E88]
Length = 349
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 148/305 (48%), Gaps = 54/305 (17%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ +P+ N LQE + + + V+ + TVK L K D +IE+V + +
Sbjct: 47 KNIPKVITNKLQENFYLSVPSVVQKYVSKDESTVKFLFKYNDGNIIESVVMKYKHGN--- 103
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
T CVS+QVGC + C+FCA+ GG R+LS EI+GQVL +E R++N+V MG GE
Sbjct: 104 --TICVSTQVGCKMGCTFCASTIGGIVRSLSHGEILGQVLKAQEETGERISNIVMMGSGE 161
Query: 171 PMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
P+ N + L R +N + + IGQR IT+ST G+ I++LA LQ TLAI
Sbjct: 162 PLDNYDNSLNFIRMVNAENGLNIGQRHITLSTCGIVPKIRQLAEENLQITLAISLHAPND 221
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
+ +ND+ HA ELA LL
Sbjct: 222 NIRRKTMPIASVYSVEELIEACNYYINKTNRRITFEYALVSNLNDKEVHAEELATLLK-- 279
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
G HVNLIP N I+ D++ + F+ L I T+IR+ G D +AACGQLR
Sbjct: 280 GMLCHVNLIPVNKIDEKDFKSSSTNRIKNFSNILLKSGIQTTIRREMGSDINAACGQLRR 339
Query: 304 EFQKS 308
+ K+
Sbjct: 340 RYVKN 344
>gi|87308293|ref|ZP_01090434.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
gi|87288850|gb|EAQ80743.1| hypothetical protein DSM3645_12021 [Blastopirellula marina DSM
3645]
Length = 351
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 152/301 (50%), Gaps = 61/301 (20%)
Query: 53 VPQSFRNDLQEAG--WTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+P+ R+ L E W+ I R TAADGT KLL++L D IE V + D
Sbjct: 49 LPKPLRSQLAEKAQLWST---EIARHTTAADGTEKLLLQLHDGGRIECVLLRDGD----- 100
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK--HRVTNVVFMGM 168
R T C+S+QVGC + C FCA+G G RNL+ EI+ Q+L ++ + R++++V MGM
Sbjct: 101 RRTICISTQVGCAMGCVFCASGLDGVERNLTVGEIIEQMLRLQRLLPVGERLSHIVVMGM 160
Query: 169 GEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS----YKLQSTL--- 219
GEP+ N+ +L A + + +G R ITISTVG+P I+KLA Y L +L
Sbjct: 161 GEPLANVDRLLSALDFASSEEGLGISHRRITISTVGLPPAIRKLADRDSRYHLAVSLHAP 220
Query: 220 ------------------AIRSAG--------------------VNDQVEHAVELAELLH 241
AI A +NDQ EHA LA+LL
Sbjct: 221 DDQLRNQIVPTNKNIGIHAILEAADHYFEISGRRLTFEYVLLAELNDQPEHAHRLAKLLR 280
Query: 242 EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
GR +N+IP+NP+ G Y+ P K+A AF LE +T RQ +G +AACGQL
Sbjct: 281 --GRPALLNIIPYNPVAGLPYRTPSKEAQHAFRAILEGAGLTVKFRQKKGDKINAACGQL 338
Query: 302 R 302
R
Sbjct: 339 R 339
>gi|331086042|ref|ZP_08335125.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330406965|gb|EGG86470.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 358
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 137/278 (49%), Gaps = 54/278 (19%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
R V+A DGT K L +L D ++E+V + + + C+SSQVGC + C FCA+ G
Sbjct: 73 RQVSAMDGTNKFLFRLSDGHVVESVLMKYKHGN-----SVCISSQVGCRMGCRFCASTIG 127
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIG 192
G RNL+ E++GQ+ I+ I RV NVV MG GEP+ N +++L+ + L + + I
Sbjct: 128 GLERNLTPSEMLGQIYQIQRISGERVANVVVMGTGEPLDNYENLLKFIQMLTDEHGLHIS 187
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLAIR------------------------------ 222
QR +T+ST G+ + +LA LQ TLA+
Sbjct: 188 QRNVTVSTCGIVPKMLELAEEHLQITLALSLHGSTQEKRKKLMPVANKYELSEVLEACDI 247
Query: 223 ---------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
GVND E A EL+ LL R H+NLIP NPI+ D++RP +
Sbjct: 248 YFAKTGRRMTFEYSLVHGVNDTEEDAKELSALLSH--RNCHINLIPVNPIKERDFERPTR 305
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
+A F LE I +IR+ G D ACGQLR +
Sbjct: 306 EAAEKFKNKLEKSGINVTIRREMGSDIDGACGQLRKRY 343
>gi|325105966|ref|YP_004275620.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
12145]
gi|324974814|gb|ADY53798.1| 23S rRNA m(2)A-2503 methyltransferase [Pedobacter saltans DSM
12145]
Length = 351
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 157/323 (48%), Gaps = 56/323 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + A+ T + + R+ L+E + + + I + ++D T+K
Sbjct: 29 PFRANQIYEWIWKKSAT-TFDEMTNISKDLRDKLKEI-FVINAVKINSSQFSSDKTIKNS 86
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
L D LIE V IP P R+TACVSSQVGC L C FCATG RNL+ EI
Sbjct: 87 FILHDTHLIEGVLIPT-----PERMTACVSSQVGCSLTCKFCATGYMDRKRNLNPDEIYD 141
Query: 148 QVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEA-HRCLNKD-VQIGQRMITISTV 201
QV+ I++ K +TN+V+MGMGEP+LN +VL++ R ++D + + + IT+ST
Sbjct: 142 QVVLIDKQAKENYGIPLTNIVYMGMGEPLLNYANVLKSIERITSEDGLNMASKRITVSTA 201
Query: 202 GVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELL----------- 240
G+ IKKL ++ LA+ NDQ + + LAE L
Sbjct: 202 GIAKMIKKLGDDNVKFNLALSLHAANDQKRNEIMPINEQNSLQALAEALKYFYAKTKNPV 261
Query: 241 -------HEWGRGHH---------------VNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
+++ G VN+I +NPI +D+ + + AFA L
Sbjct: 262 TYEYIVFNDFNDGIEDARELAKFCKHIPCKVNIIEYNPISFADFANAQEDKIEAFAEHLR 321
Query: 279 SHKITTSIRQTRGLDASAACGQL 301
+TT+IR++RG D AACGQL
Sbjct: 322 KQGVTTNIRRSRGKDIDAACGQL 344
>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 371
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 161/348 (46%), Gaps = 65/348 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W R G + + + FR L ++ + + R + DG VK +
Sbjct: 31 RGRQILAWIYRPGIIDFTQMT-DLAKEFRAILTQSAF-MSRFDDCMVECSRDGAVKFAFR 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L+D ++IE+V IP ED R T CVSSQVGC + CSFC TG GF RNL++ EIV QV
Sbjct: 89 LDDGQIIESVLIPEED-----RNTLCVSSQVGCAMGCSFCLTGAMGFCRNLTTAEIVNQV 143
Query: 150 LAIEEIF----KHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGV 203
A+ + K +TN+VFMGMGEP+ N ++L+A L + + R IT+ST G+
Sbjct: 144 CAVRDWTLAHDKGLLTNIVFMGMGEPLANFDNLLDAIAILTEQRGLDFSNRRITVSTCGL 203
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVE-------------------------------- 231
+++L + LA+ VND+V
Sbjct: 204 VPQMRRLGE-ETDVNLAVSLHAVNDEVRSRLMPVNKRYPIAELIEVCRTYRQKRRKRIMF 262
Query: 232 -------------HAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
AV+LAELL E +NL+ NP GS YQ P ++ VL F L
Sbjct: 263 EYTLLQGINDSDADAVQLAELLREV--PCKINLLAVNPGSGSAYQSPGEERVLCFQRILR 320
Query: 279 SHKITTSIRQTRGLDASAACGQLR----NEFQKSPLRIDSSNSSSESD 322
T IR +RG D SAACGQL NE Q L + S+ D
Sbjct: 321 DRGYTVFIRTSRGEDISAACGQLAGKGWNEEQAISLDKTTLQSTGTDD 368
>gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 396
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 100 SADGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 153
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 154 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 213
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + ++++ + +Q LA
Sbjct: 214 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATV 273
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAEL+ G +NLIPFNP GS Y
Sbjct: 274 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMK--GTPCKINLIPFNPYPGSPY 331
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 332 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 370
>gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
Length = 373
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ N+ +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRV-GNQDVETVYIPEDD-----RATLCVSSQVGCALDCKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAKEIGVEKETGRRPITNVVMMGMGEPLLNMKNLIPALNLMLDDLGY 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + ++++ Y +++ LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGKIDVALAISLHAPNDELRSQIMPINDRYDIETFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND +EHA +LAELL + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGRVTVEYILLDHVNDDMEHARQLAELLKD--TPAKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L + T +R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYDYTVIVRKTRGDDIDAACGQL 347
>gi|237745020|ref|ZP_04575501.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
gi|229432249|gb|EEO42461.1| radical SAM family enzyme [Fusobacterium sp. 7_1]
Length = 358
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 152/283 (53%), Gaps = 54/283 (19%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP-MRLTACVSSQVGCPLRCSFCATGKGG 135
++ D T K L +LED IETV + +D K +R T C+SSQVGCP++CSFCATG+ G
Sbjct: 75 ISKIDRTEKFLFELEDKGTIETVLLRHKDSKNKEIRNTLCISSQVGCPVKCSFCATGQSG 134
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
+ RNLS EI+ QV +E + + + N+VFMGMGEP+LN+ ++ ++ ++ + +
Sbjct: 135 YMRNLSVSEILNQVYTVERRLRKKGETLNNLVFMGMGEPLLNIDNLAKSLSIISNENGIN 194
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQ-------------------- 229
I +R ITIST GV + I+K+ K+ LAI + +N++
Sbjct: 195 ISKRKITISTSGVVSGIEKILLDKIPIELAISLHSAINEKRDKIIPLNKNFPLEDLSAVL 254
Query: 230 VEH------------------------AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+E+ A LA+ +H++ H VNLIP+N +EG ++ RP
Sbjct: 255 IEYQKQTKRRITFEYILIDNFNISETDANALADFVHQF--DHVVNLIPYNEVEGVEHTRP 312
Query: 266 YKKAVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
K + F L++ ++ ++RQ +G D ACGQLR +K
Sbjct: 313 SVKKIDKFYNYLKNVRRVNVTLRQEKGSDIDGACGQLRQRNKK 355
>gi|389808181|ref|ZP_10204591.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter thiooxydans
LCS2]
gi|388443059|gb|EIL99218.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter thiooxydans
LCS2]
Length = 376
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 156/335 (46%), Gaps = 65/335 (19%)
Query: 24 FFTC----PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FFT P R Q W + V ++ R L EA + +G A
Sbjct: 24 FFTQIGEKPYRAEQVMKW-IYHDLEDNFENMTDVGKALRAKLTEACY-IGAPKTLLDKVA 81
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT K L+ ++ IETV IP P R T CVSSQ+GC L C FC+TG GF+RN
Sbjct: 82 TDGTHKWLLGMDSGNAIETVYIP-----EPTRGTLCVSSQIGCALNCQFCSTGAQGFNRN 136
Query: 140 LSSHEIVGQVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG- 192
LS+ EI+GQV + R+TNVV MGMGEP+ N +VL+A + + D+ G
Sbjct: 137 LSTAEIIGQVWVAAKYLGNVTHQNRRITNVVMMGMGEPLANFDNVLKAMKLMRDDLGFGL 196
Query: 193 -QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI--- 221
+ +T+ST G+ I +L+ Y L LA
Sbjct: 197 AAKRVTLSTAGLVPLIDQLSDAIDVSLAVSLHAANDELRTELMPINKRYPLAELLAACQR 256
Query: 222 ------RSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
R++ GVNDQ EHA +L +L+ + VNLIPFNP G+ ++R
Sbjct: 257 WIARKPRTSITFEYTLMQGVNDQPEHARQLIKLMRKLPTC-KVNLIPFNPFPGTQFKRSA 315
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ + F L + + T +R+TRG D AACGQL
Sbjct: 316 PEDIHQFQTQLLNAGVLTMLRRTRGDDIDAACGQL 350
>gi|407793032|ref|ZP_11140067.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
xiamenensis 10-D-4]
gi|407215392|gb|EKE85231.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
xiamenensis 10-D-4]
Length = 378
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 139/290 (47%), Gaps = 64/290 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K ++ L D + +ETV IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 79 SSDGTIKFVMTLFDGQDVETVWIPESD-----RATLCVSSQVGCALECTFCSTAQQGFNR 133
Query: 139 NLSSHEIVGQVLAIEEIFK-------HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + ++ VTNVV MGMGEP+LNLK+V+ A R + D
Sbjct: 134 NLRVAEIIGQVWRVNKLLGAYAETGVKAVTNVVMMGMGEPLLNLKNVVPAMRLMMDDWGF 193
Query: 192 G--QRMITISTVGVPNTIKKLASYKLQSTLAIRSAG------------------------ 225
G +R +T+ST GV + L ++ LAI
Sbjct: 194 GLSKRRVTLSTSGVVPAL-DLMKEQIDVALAISLHAPDDALRDQIVPINKKYPIAEFLAA 252
Query: 226 -----------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
VND E A LA+ L G VNLIPFNP G++Y
Sbjct: 253 SRRYIDGSKANKAVTVEYVMLDHVNDSTEQAHALAKTLA--GTPSKVNLIPFNPFPGNEY 310
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + FA L SH +T +R+TRG D AACGQL + RI
Sbjct: 311 GRSSNSRIDRFAKVLMSHGLTVMVRKTRGDDIDAACGQLVGDVVDRTKRI 360
>gi|239815175|ref|YP_002944085.1| Cfr family radical SAM protein [Variovorax paradoxus S110]
gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
Length = 382
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 141/293 (48%), Gaps = 59/293 (20%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
V LP+ + DGT+K L + D +E V IP ED++G T CVSSQ GC + C
Sbjct: 63 VEALPVITQHESKDGTIKWLFDVGDGNAVEAVFIP-EDDRG----TLCVSSQAGCAVGCR 117
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLE 180
FC+TG GFSRNLS+ EIV Q+ E + ++NVV MGMGEP+ N +++
Sbjct: 118 FCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGEPLQNYTALVP 177
Query: 181 AHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS-------------------------- 212
A R + D G +R +T+ST GV I +L +
Sbjct: 178 ALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCPVAMAVSLHAPNDALRDDLVPLNR 237
Query: 213 -YKLQSTL---------AIRS---------AGVNDQVEHAVELAELLHEWGRGHHVNLIP 253
Y + L A R GVNDQ EHA +L EL+ G NLIP
Sbjct: 238 KYPIAELLEACKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLVELVRTHGVSCKFNLIP 297
Query: 254 FNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
FNP S R + VLAFA AL + T++R+TRG D AACGQL + +
Sbjct: 298 FNPFPASGLLRSPQPRVLAFAKALSEAGLVTTVRKTRGDDIDAACGQLAGDVK 350
>gi|317489233|ref|ZP_07947750.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
gi|325832221|ref|ZP_08165220.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
gi|316911634|gb|EFV33226.1| cfr family radical SAM enzyme [Eggerthella sp. 1_3_56FAA]
gi|325486057|gb|EGC88511.1| 23S rRNA m2A2503 methyltransferase [Eggerthella sp. HGA1]
Length = 353
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 138/273 (50%), Gaps = 48/273 (17%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K L++ +D +ETVGIP + RLT C S+Q GCP+ C+FCATG+ GF+R
Sbjct: 81 SKDGTRKYLVEFDDGIRVETVGIPSRNGD---RLTVCFSTQAGCPIACAFCATGQEGFAR 137
Query: 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMI 196
NL+ EIV QVL ++E RVTN V MG GEP LN + + A R LN K ++IG R I
Sbjct: 138 NLTPGEIVDQVLIVQEDMGKRVTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHI 197
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAG----VNDQVEHAVELAEL--LHEWGRGH--- 247
++ST G+ +++ + Q TLA+ + D + V EL L E + +
Sbjct: 198 SVSTCGILPGLERFSEEPEQFTLAVSLHAARQPIRDLIMPNVARYELPSLKEALQNYVAK 257
Query: 248 ----------------------------------HVNLIPFNPIEGSDYQRPYKKAVLAF 273
HVNLIP N IEGS++Q + + +
Sbjct: 258 TNRRVTLEYIMIEGVNDAPADLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLW 317
Query: 274 AGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+ ++R +RG D S ACGQL+N F+
Sbjct: 318 LSEISKKGTEATLRDSRGSDISGACGQLKNTFK 350
>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
Length = 345
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 155/329 (47%), Gaps = 64/329 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q A W + S + + + R L E + L + + + DGT K L
Sbjct: 23 PYRAKQIAQWLYKKRVSSFDQMTN-LSKEARKLLSEKA-QIDLLKLVKVEESKDGTRKYL 80
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+LED IE+V IP +D T CVS+QVGCP C FC T K GF+RNL++ EIV
Sbjct: 81 FELEDGSRIESVFIPEKDWN-----TLCVSTQVGCPAGCRFCLTAKDGFTRNLTAGEIVD 135
Query: 148 QVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEA-----HRCLNKDVQIGQRMITIST 200
Q + ++ R++NVVFMGMGEP+LN +V +A HR + + + R +T+ST
Sbjct: 136 QYIQVQRDVGENRRISNVVFMGMGEPLLNFDNVKKAVEIMTHRDM---LDLSTRKVTVST 192
Query: 201 VGVPNTIKKLASYKLQSTLAIR-------------------------------------- 222
VG+ I ++A + LA+
Sbjct: 193 VGIVPGIDRMAKEMNKVKLAVSLHATTDEVRNMLVPLNRKYPIGEIMAALRRYPADNNRR 252
Query: 223 -------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
GVND +E A L +L+ G VNLIPFNP G++++ ++ + AF
Sbjct: 253 IMIEYVMLKGVNDSLEDARRLVKLVK--GIPVKVNLIPFNPYPGAEFEPTPREQIEAFQK 310
Query: 276 ALESHKITTSIRQTRGLDASAACGQLRNE 304
L H I IR +RG D SAACG LR +
Sbjct: 311 VLWDHNIAAFIRDSRGQDISAACGMLRTK 339
>gi|189485422|ref|YP_001956363.1| conserved hypothetical protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|205829922|sp|B1H070.1|RLMN_UNCTG RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|170287381|dbj|BAG13902.1| conserved hypothetical protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 350
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 55/299 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ RN L E + + + + D T++ + D + V +P +
Sbjct: 55 IPKELRNKLDEKFFLRTLKIVKKEKSLIDSTIRYTFRTADKKYFFAVFLPANGKN----- 109
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+SSQ+GCP+ C+FC++GK +RNLS EI+ Q+L +E K +++ ++FMGMGEPM
Sbjct: 110 SVCISSQIGCPIMCAFCSSGKTKLARNLSRGEIIEQILQVENDTKEKISGILFMGMGEPM 169
Query: 173 LNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLAS------------------ 212
LN +++ L +K+ IG+R IT+S+VG+ +KKLA
Sbjct: 170 LNFNNLISVLNSLLSSKEFGIGKRHITVSSVGIVPAVKKLADDNFGVRLALSLHAVDERQ 229
Query: 213 ---------------------YKLQST---LAIRSA---GVNDQVEHAVELAELLHE--- 242
Y L+ T L I G+N A +LA LL
Sbjct: 230 RKKLVPDNLGFSIEDILKAGKYYLKKTNSHLTIEYVLVKGINISSADAHKLARLLKRCDL 289
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
VNLIPFNP+ +QRP KK++ F L+ + IT ++RQ++G + +AACGQL
Sbjct: 290 INSDVQVNLIPFNPVTDVQFQRPDKKSINKFKSILKLNGITVNVRQSKGANINAACGQL 348
>gi|399026543|ref|ZP_10728261.1| 23S rRNA methyltransferase [Flavobacterium sp. CF136]
gi|398075975|gb|EJL67070.1| 23S rRNA methyltransferase [Flavobacterium sp. CF136]
Length = 347
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 147/293 (50%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
+ E + + + + ++DGTVK + L D ++E+V IP E R TACVSSQV
Sbjct: 58 MLENNFVINHIKVDTMQRSSDGTVKNAVLLHDGLVVESVLIPTE-----TRTTACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C+FCAT + RNL EI QVLAI++ H ++N+VFMGMGEP++N
Sbjct: 113 GCSLDCNFCATARLKRMRNLEPGEIYDQVLAIDKESRLYHNHPLSNIVFMGMGEPLMNYN 172
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+V++A + +G + I +ST G+P IKK+A ++ LA+ D++ +
Sbjct: 173 NVIKAIDMITSPEGLGMSPKRIIVSTSGIPKMIKKMADDDVKFKLAVSLHSAIDEIRAKI 232
Query: 235 ----------ELAELLHEWGRGH---------------------------------HVNL 251
+L E L W R VNL
Sbjct: 233 MPFSKNFPLADLREALEYWYRKTKNKISYEYVVWKGINDDKASIDALVKFCKYVPCKVNL 292
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ ++Q+ ++++LA+ ALE+ + +R++RG D AACGQL N+
Sbjct: 293 IEYNPIDDGEFQQASEESILAYIKALENIGVVVKVRRSRGKDIDAACGQLANK 345
>gi|205373324|ref|ZP_03226128.1| YloN [Bacillus coahuilensis m4-4]
Length = 362
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 143/283 (50%), Gaps = 57/283 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K L +L D IETV + E G + CV++QVGC + C+FCA+ GG R
Sbjct: 87 SSDGTIKFLFELHDGYSIETV--LMRHEYGN---SVCVTTQVGCRIGCTFCASTLGGLKR 141
Query: 139 NLSSHEIVGQVLAIEEIF---KHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQ 193
NL + EIV QVL +++ + RV++VV MG+GEP N +S++ R +N K + IG
Sbjct: 142 NLEAGEIVAQVLKVQQALDETEERVSSVVIMGIGEPFDNYESMMSFLRTINNEKGLNIGA 201
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RS--------------------- 223
R IT+ST G+ I K A K Q AI RS
Sbjct: 202 RHITVSTSGIIPKIYKFADEKTQINFAISLHAANTELRSRLMPINRAYKLPDLMDAVKYY 261
Query: 224 ---------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
GVND VEHA ELA+L+ + H+NLIP N + DY R K+
Sbjct: 262 IDKTGRRVSFEYGLFGGVNDSVEHAEELADLVKDV--KCHINLIPVNYVPERDYVRTPKE 319
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
+ F AL+ + +IR+ +G D AACGQLR + +K R
Sbjct: 320 KIFEFEKALKKRGVNVTIRREQGHDIDAACGQLRAKERKEETR 362
>gi|343494437|ref|ZP_08732699.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
gi|342825342|gb|EGU59841.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
Length = 372
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 STDGTIKWAMRVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA--------------- 220
G +R +T+ST GV + + ++ + KL+S +
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHAPNDKLRSEIMPINDRWDIEDFLTSV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND +EHA +LAELL + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTIEYVLLDHVNDDMEHARQLAELLKD--TPAKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L H T ++R+TRG D AACGQL
Sbjct: 309 RKPSNSRIDRFMKTLMKHDYTVTVRKTRGDDIDAACGQL 347
>gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
sp. X514]
gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|320116142|ref|YP_004186301.1| Cfr family radical SAM protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|205829918|sp|B0KA06.1|RLMN_THEP3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829919|sp|B0K1Y9.1|RLMN_THEPX RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 342
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 161/336 (47%), Gaps = 58/336 (17%)
Query: 22 FFFFTCPSRGRQRAPWHVRAGASKTR-RRPRPVPQSFRNDLQEAGWTVGRLPIF-RTVTA 79
FF SR R + + G T + + ++ R+ L+E + V +L I R V+
Sbjct: 15 FFVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEIAY-VSQLKIEERRVSE 73
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
D TVK L LED +IE V I K TACVS+QVGC +RCSFCA+ GG R+
Sbjct: 74 IDDTVKYLFLLEDGNIIEGVAI-----KYRFGNTACVSTQVGCNMRCSFCASAIGGKVRD 128
Query: 140 LSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMIT 197
L + E+V QV+AI+ + +++N+V MG GEP N V++ + +N + IG R IT
Sbjct: 129 LKASEMVDQVMAIDSDY-GKISNIVLMGSGEPFDNYDEVMKFIKIVNNPHGLGIGSRHIT 187
Query: 198 ISTVGVPNTIKKLASYKLQSTLAIR----------------------------------- 222
IST G+ I + A KLQ L+I
Sbjct: 188 ISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLEELMKACKYYVDKT 247
Query: 223 ----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
GVND+ EHA +L +LL G H+NLIP N + +++ + V+
Sbjct: 248 RRRITFEYSLIEGVNDKKEHAYQLVDLLK--GMLCHINLIPINYVREIGFKKANNEKVMM 305
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
F +E I+ ++R+ G D AACGQLR ++ K
Sbjct: 306 FKRIIEDAGISCTVRRELGSDIEAACGQLRRKYLKE 341
>gi|352082098|ref|ZP_08952921.1| radical SAM enzyme, Cfr family [Rhodanobacter sp. 2APBS1]
gi|389796713|ref|ZP_10199764.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 116-2]
gi|351682236|gb|EHA65342.1| radical SAM enzyme, Cfr family [Rhodanobacter sp. 2APBS1]
gi|388448238|gb|EIM04223.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 116-2]
Length = 376
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 156/335 (46%), Gaps = 65/335 (19%)
Query: 24 FFTC----PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FFT P R Q W + V ++ R L EA + +G A
Sbjct: 24 FFTQLGEKPYRAEQVMKW-IYHDLEDDFENMTDVGKALRAKLTEACY-IGAPKTLLDKVA 81
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT K L+ ++ IETV IP P R T CVSSQ+GC L C FC+TG GF+RN
Sbjct: 82 TDGTHKWLLGMDSGNAIETVYIP-----EPTRGTLCVSSQIGCALNCQFCSTGAQGFNRN 136
Query: 140 LSSHEIVGQVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG- 192
LS+ EI+GQV + R+TNVV MGMGEP+ N +VL+A + + D+ G
Sbjct: 137 LSTAEIIGQVWVAAKYLGNVTHQNRRITNVVMMGMGEPLANFDNVLKAMKLMRDDLGFGL 196
Query: 193 -QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI--- 221
+ +T+ST G+ I +L+ Y + LA
Sbjct: 197 AAKRVTLSTAGLVPLIDQLSEAIDVSLAVSLHAANDELRTELMPINKRYPIAELLAACQR 256
Query: 222 ------RSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
R++ GVNDQ EHA +L +L+ + VNLIPFNP G+ ++R
Sbjct: 257 WIARKPRTSITFEYTLMQGVNDQPEHARQLIKLMRKLPTC-KVNLIPFNPFPGTQFKRSD 315
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ AF L + + T +R+TRG D AACGQL
Sbjct: 316 AADIHAFQTQLLNAGVLTMLRRTRGDDIDAACGQL 350
>gi|343501746|ref|ZP_08739615.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|418481170|ref|ZP_13050218.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342816871|gb|EGU51763.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|384571122|gb|EIF01660.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 375
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLAF 190
Query: 192 G--QRMITISTVGVPNTIKK------------------------------------LASY 213
G +R +T+ST GV + + + LAS
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIEDFLASV 250
Query: 214 K--LQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +QS+ A R VND ++HA ELAELL + +NLIPFNP GS Y
Sbjct: 251 RRYIQSSNANRGKVTVEYVLLDHVNDDMDHARELAELLKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|392552324|ref|ZP_10299461.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
spongiae UST010723-006]
Length = 377
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 147/305 (48%), Gaps = 62/305 (20%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
A+DGT+K + LE + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+
Sbjct: 77 VASDGTIKYALVLEGGQEVETVWIPEKD-----RATLCVSSQVGCALECTFCSTAQQGFN 131
Query: 138 RNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL EI+GQV + + K VTNVV MGMGEP+LNL +V+ A + D
Sbjct: 132 RNLKVSEIIGQVWRVAKDIGLHGDSTKRPVTNVVMMGMGEPLLNLNNVVPAMELMMDDWA 191
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +T+ST GV + L Y ++ LA
Sbjct: 192 FGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNELRDVLVPINKKYPIEEFLAA 251
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ GVND +HA EL ++L G +NLIPFNP G++Y
Sbjct: 252 CRRYIDGSKANKDITIEYVMLQGVNDSTDHAHELVKVLK--GTPSKINLIPFNPFPGNEY 309
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + F+ L++ +T +R+TRG D AACGQL + R+ ++
Sbjct: 310 GRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVVDRTKRVMKKKQLDDNK 369
Query: 323 IAVAS 327
I+V +
Sbjct: 370 ISVNT 374
>gi|310644715|ref|YP_003949474.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
polymyxa SC2]
gi|309249666|gb|ADO59233.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa SC2]
gi|392305371|emb|CCI71734.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa M1]
Length = 365
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 150/292 (51%), Gaps = 62/292 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGTVK L +L+D LIETV + + L+ CV++QVGC + CSFCA+G SR
Sbjct: 74 SADGTVKFLFRLQDGNLIETVLM-----RHKFGLSVCVTTQVGCNIGCSFCASGLLKKSR 128
Query: 139 NLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQI 191
+LSS EIVGQ++ ++ RV++VV MG+GEP N ++ + R + +K + I
Sbjct: 129 DLSSGEIVGQIMKVQLYLDQERPGDRVSHVVVMGIGEPFDNFVNLSDFIRVIKDHKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIR----------------------------- 222
GQR IT+ST G+ + I + A L LAI
Sbjct: 189 GQRHITVSTSGLADKIIEFADSDLHVNLAISLHAPNNEIRTRIMKINRAIPIEKLMQAID 248
Query: 223 ----------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPI-EGSDYQRP 265
VND EHA+ELAEL+ +VNLIP+NP+ E S YQR
Sbjct: 249 YYLDKTNRRITLEYILLKDVNDGKEHALELAELVGHRRNLANVNLIPYNPVDEHSQYQRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNS 317
+++ F L+ I+ S+R G+D AACGQLR++ +R D+++S
Sbjct: 309 ESESITGFYDVLKKQGISCSVRLEHGVDIDAACGQLRSK----QIRKDANSS 356
>gi|417320649|ref|ZP_12107192.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus 10329]
gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus 10329]
Length = 375
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ E +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKE--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|295696043|ref|YP_003589281.1| radical SAM enzyme, Cfr family [Kyrpidia tusciae DSM 2912]
gi|295411645|gb|ADG06137.1| radical SAM enzyme, Cfr family [Kyrpidia tusciae DSM 2912]
Length = 360
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 152/304 (50%), Gaps = 57/304 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ RN L+E + R V+ DGT K L +L D +ETV + +
Sbjct: 60 LPKALRNVLRERARLGTMEELTRQVSKKDGTTKFLFRLFDGATVETVLM-----RHSYGH 114
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMG 169
+ CVSSQVGC + C FCA+ GG RNL + E+V QVLA + + RV++VV MG G
Sbjct: 115 SVCVSSQVGCHMGCQFCASTLGGLVRNLEAGEMVEQVLACQRMLDQQGQRVSSVVVMGSG 174
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA------- 220
EP+ N + L R + D ++IGQR IT+ST G+ I+KLA +LQ TLA
Sbjct: 175 EPLENYGATLRFIRLITADEGLRIGQRHITVSTSGMVPAIRKLAEERLQITLAVSLHASN 234
Query: 221 --IRS------------------------------------AGVNDQVEHAVELAELLHE 242
+RS G+ND+++ A ELA+ L
Sbjct: 235 DEVRSRLMPINRAYPIAVLLEACREYWEKTGRRLTFEYALIGGINDRLDQADELADRLR- 293
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP N + + R ++ V AF LE H I+ ++R+ G D +AACGQLR
Sbjct: 294 -GLPCHVNLIPVNYVPERRFDRTPRRQVEAFRERLERHGISCTVRREMGADIAAACGQLR 352
Query: 303 NEFQ 306
++
Sbjct: 353 AGYE 356
>gi|406945406|gb|EKD76900.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium]
Length = 374
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 155/327 (47%), Gaps = 69/327 (21%)
Query: 57 FRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACV 116
FR L++ + +L + DGT K L +L D IETV IP E +G T CV
Sbjct: 55 FREKLKQET-CISKLETITDQESRDGTRKFLFRLYDGSAIETVFIP-EKTRG----TLCV 108
Query: 117 SSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPML 173
SSQVGC L CSFC+TGK GF+RNLS EI+GQ+ + K H++TNVV MGMGEP+L
Sbjct: 109 SSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQLFLARDKLKNTPHQITNVVMMGMGEPLL 168
Query: 174 NLKSVLEAHRCLNKDVQIG--QRMITISTVGV--------PNTIKKLA------------ 211
N + V++A + D+ G + +T+ST GV ++I LA
Sbjct: 169 NYQPVIDAMELMMHDLAYGLSKYRVTLSTSGVVPQLLQFKKDSIASLAVSLHAPTNELRE 228
Query: 212 -------SYKLQSTL------------------AIRSAGVNDQVEHAVELAELLHEWGRG 246
Y L+ + + G+ND + A +L LL
Sbjct: 229 QLVPINKKYPLEVLMPVCRDYFPTDSKRCIVFEYVMLKGINDSLLQAKQLIRLLDNM--P 286
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+NLIPFNP +DY + +LAF L + T +R+TRG D ACGQL +F+
Sbjct: 287 CKINLIPFNPFPKTDYVCSDMQTILAFQDRLTKAGVKTWVRKTRGDDIDGACGQLAGDFK 346
Query: 307 K-----------SPLRIDSSNSSSESD 322
L I +N +S++D
Sbjct: 347 DRTGRHARWKKTGKLVIRKTNYASDTD 373
>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
Length = 399
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 147/292 (50%), Gaps = 67/292 (22%)
Query: 70 RLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSF 128
R+P + + DGT K LI++ IETV IP + E+G T CVSSQVGC L CSF
Sbjct: 80 RIPEVIEQWDSTDGTRKFLIRVGGGNAIETVFIP-DGERG----TLCVSSQVGCSLDCSF 134
Query: 129 CATGKGGFSRNLSSHEIVGQVLAIEEIF----------KHRVTNVVFMGMGEPMLNLKSV 178
CATGK GF+R+L+S EI+GQV + F +VTNVV MGMGEP+LN ++V
Sbjct: 135 CATGKQGFNRDLTSDEIIGQVWIAAKSFGQLQEGGARGDRKVTNVVLMGMGEPLLNFENV 194
Query: 179 LEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASY--------------KLQSTLA-- 220
+EA + D I +R +T+ST GV + +L Y +L++ L
Sbjct: 195 VEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDACLAISLHAPNDELRNQLVPI 254
Query: 221 ---------IRSAG----------------------VNDQVEHAVELAELLHEWGRGHHV 249
+ SA VND++EHA EL ELL + +
Sbjct: 255 NKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELVELLKDVPV--KI 312
Query: 250 NLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NLIPFNP S+Y++ A+ F L T ++R TRG D AACGQL
Sbjct: 313 NLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGDDIDAACGQL 364
>gi|340616820|ref|YP_004735273.1| radical SAM protein [Zobellia galactanivorans]
gi|339731617|emb|CAZ94882.1| Radical SAM family protein [Zobellia galactanivorans]
Length = 346
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 155/330 (46%), Gaps = 68/330 (20%)
Query: 30 RGRQRAPW------HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
RG Q W H G + + R D+ EA + + + + + + DGT
Sbjct: 29 RGNQVYEWLWQKAAHSFEGMTNISKETR--------DMLEANFVINHIKVDQMQRSNDGT 80
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
+K + L D+ ++E+V IP + R TACVSSQVGC L C FCAT + RNL+
Sbjct: 81 IKNAVILHDDLVVESVLIPTK-----TRTTACVSSQVGCSLDCRFCATARLKRMRNLNPD 135
Query: 144 EIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMIT 197
EI QV+AI+ F ++N+VFMGMGEP++N +VL+A + +G + IT
Sbjct: 136 EIYDQVVAIDNESRLYFDRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRIT 195
Query: 198 ISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG- 246
+ST GVP I+K+A +++ LA+ D + ++ +L E L W
Sbjct: 196 VSTSGVPKMIRKMADDEVKFKLAVSLHSAIDDIRTSIMPFNATFTLADLREALEYWYAKT 255
Query: 247 --------------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
VNLI +NPI+ ++Q+ A+ +
Sbjct: 256 KSRITYEYVVWQGINDSQTDVDALVDFCRFAPSKVNLIEYNPIDDGEFQQASNSAIDMYV 315
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNE 304
LE + I ++R++RG D AACGQL N+
Sbjct: 316 NTLERNGIVVTVRRSRGKDIDAACGQLANK 345
>gi|373111126|ref|ZP_09525386.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CCUG 10230]
gi|423132460|ref|ZP_17120110.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CCUG 12901]
gi|423135856|ref|ZP_17123501.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CIP 101113]
gi|423329578|ref|ZP_17307384.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CCUG 3837]
gi|371639531|gb|EHO05147.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CCUG 12901]
gi|371640033|gb|EHO05640.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CIP 101113]
gi|371641187|gb|EHO06774.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CCUG 10230]
gi|404603206|gb|EKB02881.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CCUG 3837]
Length = 346
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 148/294 (50%), Gaps = 54/294 (18%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
++ +A + + + + + DGT+K +KL D ++E+V IP E R TACVSSQ
Sbjct: 57 EMLDANFVINHIKVDSMQVSTDGTIKNGVKLHDGLIVESVLIPTE-----TRTTACVSSQ 111
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK----HRVTNVVFMGMGEPMLNL 175
VGC L C FCAT + RNL+ EI QVL I++ + H ++N+VFMGMGEP++N
Sbjct: 112 VGCSLDCEFCATARLKRMRNLNPDEIYDQVLTIDQQSRQNHGHPLSNIVFMGMGEPLMNY 171
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHA 233
+V +A + + +G + IT+ST G+P IKKLA ++ LA+ ++ +
Sbjct: 172 NNVQKAIEKITSEEGLGMSPKRITVSTSGLPKMIKKLADDGVKFKLAVSLHSAIEETRNR 231
Query: 234 V----------ELAELLHEWGRGH---------------------------------HVN 250
+ EL E L W VN
Sbjct: 232 IMPFTKNFPLTELRESLQYWYSKTKSRVTYEYVIWKGINDDKASVDALVKFCKYVPCKVN 291
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
LI +NPI+ ++Q+ ++A ++ ALE + IT +R++RG D AACGQL N+
Sbjct: 292 LIEYNPIDDGEFQQADERATNSYIAALEKNDITVVVRRSRGKDIDAACGQLANK 345
>gi|399025541|ref|ZP_10727535.1| 23S rRNA methyltransferase [Chryseobacterium sp. CF314]
gi|398077800|gb|EJL68755.1| 23S rRNA methyltransferase [Chryseobacterium sp. CF314]
Length = 344
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 155/334 (46%), Gaps = 59/334 (17%)
Query: 23 FFFTC---PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
+F T P R +Q W + +S R + E +T+ + + +
Sbjct: 15 YFLTLGEKPFRAKQVYDWLWSKNLHSIDEMTN-LSKSLREKISEE-YTINPVSVDLLQKS 72
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
+DGT+K +KL D L+E+V IP E R TACVSSQVGC L C FCAT + RN
Sbjct: 73 SDGTIKNGVKLHDGLLVESVLIPTE-----TRTTACVSSQVGCSLNCEFCATARLKRMRN 127
Query: 140 LSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ-- 193
L EIV QV I+ F +TN+VFMGMGEPM+N K+V+EA R + + +G
Sbjct: 128 LEVAEIVDQVALIDSQSKMYFDRPLTNIVFMGMGEPMMNYKNVVEAIRKITQPEGLGMSP 187
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW 243
R IT+ST G+P IK LA +L+ LA+ + + + ++ E L W
Sbjct: 188 RRITVSTSGIPKMIKMLADDELRVKLALSLHSAIESKRNEIMPFSDKFPLTDIMEALQYW 247
Query: 244 GRG---------------------------------HHVNLIPFNPIEGSDYQRPYKKAV 270
+ VNLI +NPI Y + K+A
Sbjct: 248 YKKTGSVITFEYCVWKGINDGDEDIKALIKYCKQVPSKVNLIQYNPIGDGKYDQCNKQAE 307
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ LE+ IT IR++RG D AACGQL N+
Sbjct: 308 ENYVRQLENAGITVMIRKSRGGDIDAACGQLANK 341
>gi|429765804|ref|ZP_19298084.1| 23S rRNA methyltransferase [Clostridium celatum DSM 1785]
gi|429185657|gb|EKY26631.1| 23S rRNA methyltransferase [Clostridium celatum DSM 1785]
Length = 343
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 154/325 (47%), Gaps = 60/325 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTV--TAADGTVKLL 87
R +Q W + K + +P + R L+E LP V + D T K+L
Sbjct: 25 RAKQVISWIYKG--VKEFDEMKNIPVALREKLKENFLI--SLPTIVEVYESKVDDTKKML 80
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ L+DN LIE V + + + CVS+QVGC + C FCA+ GG R+LS+ EI+
Sbjct: 81 LSLKDNNLIECVIMKYKHGN-----SICVSTQVGCRMGCKFCASTLGGRIRDLSAGEILS 135
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPN 205
QV+ + R++N+V MG GEP+ N ++V + + +N + + IGQR IT+ST G+
Sbjct: 136 QVMVAQNYIGERISNIVLMGSGEPLDNFENVTKFLKLVNAEYGLNIGQRHITLSTCGIVP 195
Query: 206 TIKKLASYKLQSTLAIR------------------------------------------- 222
IK+LA L TLAI
Sbjct: 196 KIKELADLDLSITLAISLHAFSDEKRKVIMPIANKYSISEILDACKYYMDKTGRRITYEY 255
Query: 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
+GVND E A LA LL HVNLIP N I+ + +RP +K V F L+S+
Sbjct: 256 SLVSGVNDSREDAKSLATLLKSM--NCHVNLIPVNEIKENTLKRPSRKTVEDFENILKSY 313
Query: 281 KITTSIRQTRGLDASAACGQLRNEF 305
I +IR+ G D +AACGQLR +
Sbjct: 314 GIEVTIRREMGTDINAACGQLRRSY 338
>gi|409123132|ref|ZP_11222527.1| ribosomal RNA large subunit methyltransferase N [Gillisia sp.
CBA3202]
Length = 347
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 142/293 (48%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
+ E + + + + + ++DGT+K ++L DN +E+V IP P R TACVSSQV
Sbjct: 58 MLEDNFVINHIRVDQMQRSSDGTIKNAVRLHDNLTVESVLIPT-----PKRTTACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C FCAT RNL+ EI QV+AI+ F ++N+VFMGMGEP++N
Sbjct: 113 GCSLDCKFCATATLKRMRNLNPDEIYDQVVAIDNESRLYFDKPLSNIVFMGMGEPLMNYN 172
Query: 177 SVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+V++A + +G + ITIST GVP IKKLA + + LA+ D++ +
Sbjct: 173 NVMKAVEKITSKEGLGMSSKRITISTSGVPKMIKKLADDETKVKLAVSLHSAIDEIRTTI 232
Query: 235 ----------ELAELLHEWGRGH---------------------------------HVNL 251
+L E L W VNL
Sbjct: 233 MPFNATFPLEDLREALEYWYLKTKSRITYEYIVWEGINDTRKDAEALVRFCKYVPCKVNL 292
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ +Q+ A + LE + IT ++R++RG D AACGQL N+
Sbjct: 293 IEYNPIDDGVFQQASSDATHMYESMLERNGITVTVRRSRGKDIDAACGQLANK 345
>gi|423200200|ref|ZP_17186780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
gi|404620171|gb|EKB17070.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
Length = 367
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 139/280 (49%), Gaps = 59/280 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
I R ++DGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T
Sbjct: 70 ISREQRSSDGTIKWALQVGDQE-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTA 123
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
+ GF+RNL EI+GQV + K +TNVV MGMGEP+LNL +V+ A R + D
Sbjct: 124 QQGFNRNLKVSEIIGQVWRAARVVGGKRPITNVVMMGMGEPLLNLANVVPAMRLMMDDYG 183
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +TIST GV + KL Y ++ LA
Sbjct: 184 FGISKRRVTISTSGVVPALDKLGDQIDVALAISLHAPNDKLRSEIMPINDKYNIEEFLAG 243
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ +ND ++HA ELA++L + +NLIPFNP G+
Sbjct: 244 VRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD--TPSKINLIPFNPFPGNP 301
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y +P + F+ L + T +R+TRG D AACGQL
Sbjct: 302 YGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQL 341
>gi|333369698|ref|ZP_08461804.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
Length = 403
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 134/282 (47%), Gaps = 61/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K + K+ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R
Sbjct: 96 SEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISSQVGCALDCSFCSTGKQGFER 155
Query: 139 NLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
+L++ EI+GQ+ + ++ VTNVV MGMGEP+LN K V+ + + D
Sbjct: 156 DLTAAEIIGQLWVANASYMEGVDSSEWQNNVTNVVMMGMGEPLLNYKPVVSSMSLMLSDH 215
Query: 190 QIG--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA 220
G +R +T+ST GV + L Y L +A
Sbjct: 216 AYGLSKRRVTLSTSGVVPKMYDLYKDIDVALAISLHAPNDELRNELVPINKKYPLSELIA 275
Query: 221 ---------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
+ AGVND EHA +L LL G +NLIPFNP
Sbjct: 276 AAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAHQLVALLE--GLPSKINLIPFNPFPH 333
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + AF+ L + +IRQTRG D AACGQL
Sbjct: 334 APYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAACGQL 375
>gi|379727602|ref|YP_005319787.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius DAT561]
gi|376318505|dbj|BAL62292.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius DAT561]
Length = 357
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 149/290 (51%), Gaps = 61/290 (21%)
Query: 71 LPIFRTVT---AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+P+ R A DGTVK L +L D +IETV + E G L+ CV++QVGC + C+
Sbjct: 68 IPVLRQTIIQEAKDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNMGCT 122
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAH 182
FCA+G +RNL++ EIV Q++ ++ F RV++VV MG+GEP N + +++
Sbjct: 123 FCASGLLKKNRNLTAGEIVAQIMMVQRYFDQRKLGERVSHVVVMGIGEPFDNYEQLMQFI 182
Query: 183 RCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA---------IRSA------- 224
+ +N K + IG R +T+ST G+ IKK A LQ LA IRS+
Sbjct: 183 QIINDEKGLAIGARHLTVSTCGLVPQIKKFAQTGLQVNLAISLHASNNQIRSSIMRINHT 242
Query: 225 -----------------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255
VND EHA ELA+LL + + +VNLIP+N
Sbjct: 243 FPIEKLMQTIDEYIEQTNRRVTFEYIMLQKVNDYPEHAQELADLLKDKKKLAYVNLIPYN 302
Query: 256 PIEGSD-YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
P+ D Y R K +VL F L+ + I IR+ G D AACGQLR++
Sbjct: 303 PVNEHDQYCRSEKASVLKFYDILKKNGINCVIRKEHGTDIDAACGQLRSK 352
>gi|332879827|ref|ZP_08447516.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332682204|gb|EGJ55112.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 349
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 157/328 (47%), Gaps = 56/328 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + G +P++ R ++ + + + + + + DGT+K ++
Sbjct: 29 RGNQVYEWLWQKGVHSFEAMTN-LPKATR-EMLDKHFVINHIKVDVMQRSDDGTIKNAVR 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI QV
Sbjct: 87 LHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFDQV 141
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST GV
Sbjct: 142 RVIDEQSKAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSTEGLGMSAKRITLSTSGV 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
P IKK+A +++ LA+ D V ++ EL E L W +
Sbjct: 202 PKLIKKMADDEVKFKLAVSLHSAIDSVRTSIMPFNEQFPLSELREALQYWYQKTKNRITY 261
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ ++Q+ +A+ + LE
Sbjct: 262 EYVVWKGINDQRKDVEALIKFCKFAPSKVNLIEYNPIDDGEFQQADSRALTLYQTMLEEA 321
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQKS 308
IT ++R +RG D AACGQL N+ K+
Sbjct: 322 GITVTVRHSRGKDIDAACGQLANKTTKN 349
>gi|255533736|ref|YP_003094108.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
gi|255346720|gb|ACU06046.1| radical SAM enzyme, Cfr family [Pedobacter heparinus DSM 2366]
Length = 348
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 163/321 (50%), Gaps = 56/321 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + ++++ +P+ R L +A + + + + ++ + D T+K +
Sbjct: 30 RAKQVYQW-LWEKSARSFAEMSNLPKDLRAKL-DAQYAINVVEVNKSQISNDHTIKNAFR 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E V IP++D R+TACVSSQVGC L C FCATG RNL++ EI QV
Sbjct: 88 LYDGNIVEGVLIPMDD-----RMTACVSSQVGCSLTCKFCATGYMDRKRNLNADEIYDQV 142
Query: 150 LAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEA-HRCLNKD-VQIGQRMITISTVGV 203
+ I++ K +TN+V+MGMGEP+LN +VL++ R D + + + IT+ST G+
Sbjct: 143 VLIDQQAKKNYNAPLTNIVYMGMGEPLLNYANVLKSIERITAPDGLNMSYKRITVSTAGI 202
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELL------------H 241
IKKL ++ LA+ ND+ + + LAE L +
Sbjct: 203 SKMIKKLGDDGVKFNLALSLHAANDKKRNEIMPINEHNSLKALAESLKYYFAKTKNPVTY 262
Query: 242 EWGRGHH---------------------VNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
E+ +H VNLI +NPI+ +D+ + AF+ L+S
Sbjct: 263 EYIVFNHFNDEIEDAMELAKFCKHVPCKVNLIEYNPIQFADFINAEGDKIDAFSNYLKSQ 322
Query: 281 KITTSIRQTRGLDASAACGQL 301
ITT+IR++RG D AACGQL
Sbjct: 323 GITTNIRRSRGKDIDAACGQL 343
>gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|422584772|ref|ZP_16659873.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 382
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y LQ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLQMLLDSC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|421855029|ref|ZP_16287411.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403189529|dbj|GAB73612.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 411
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 137/285 (48%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G +R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGDGTGSLVETVLIPAEDKTG-LRKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLAIEEIFKH---------RVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ + + VTNVV MGMGEP+LN +VL + +
Sbjct: 160 QRDLTPDEIIGQLWVANQSYMEDVPVAERTRSVTNVVMMGMGEPLLNYDAVLSSMHIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELVPINKKYPLAQL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVND +EHA ++ LL +NLIPFNP
Sbjct: 280 IAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQMIRLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + ++AF AL +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|416018175|ref|ZP_11565169.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
gi|416025545|ref|ZP_11569279.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|422403702|ref|ZP_16480759.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|422594704|ref|ZP_16668994.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422679836|ref|ZP_16738109.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|123761313|sp|Q48LZ7.1|RLMN_PSE14 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 382
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y LQ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLQMLLDSC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|257792840|ref|YP_003183446.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
gi|257476737|gb|ACV57057.1| radical SAM enzyme, Cfr family [Eggerthella lenta DSM 2243]
Length = 353
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 151/327 (46%), Gaps = 60/327 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVT----AADGTV 84
R +Q W + AS +P S R L E R P+ TV + DGT
Sbjct: 34 RAQQLQEWLYQRHASSYDEMTN-LPGSLRATLAE------RFPLTMPTVVDRQISKDGTR 86
Query: 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHE 144
K L++ +D +ETVGIP + RLT C S+Q GCP+ C+FCATG+ GF+RNL E
Sbjct: 87 KYLVEFDDGIRVETVGIPSRNGD---RLTVCFSTQAGCPIACAFCATGQEGFARNLIPGE 143
Query: 145 IVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
IV QVL ++E RVTN V MG GEP LN + + A R LN K ++IG R I++ST G
Sbjct: 144 IVDQVLIVQEDMGKRVTNAVGMGQGEPFLNYDNTMAALRILNHKKGLEIGARHISVSTCG 203
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH----- 247
+ +++ + Q TLA+ + + L E L +
Sbjct: 204 ILPGLERFSGEPEQFTLAVSLHAARQPIRDLIMPNVARYKLPSLKEALQNYVAKTNRRIT 263
Query: 248 ----------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
HVNLIP N IEGS++Q + + + +
Sbjct: 264 LEYIMIEGVNDAPVDLKALQKFCSNLLCHVNLIPINAIEGSEFQPSSPETINLWLSEISK 323
Query: 280 HKITTSIRQTRGLDASAACGQLRNEFQ 306
++R +RG D S ACGQL+N F+
Sbjct: 324 KGTEATLRDSRGSDISGACGQLKNTFK 350
>gi|325955527|ref|YP_004239187.1| ribosomal RNA large subunit methyltransferase N [Weeksella virosa
DSM 16922]
gi|323438145|gb|ADX68609.1| Ribosomal RNA large subunit methyltransferase N [Weeksella virosa
DSM 16922]
Length = 348
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 161/327 (49%), Gaps = 56/327 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + A + ++ R +L +A + + + + + DGT+K +K
Sbjct: 29 RGKQVYEWLWKKNAHDFNDMTN-LSKNLRENL-DAAFRIQPVEVDFLQKSNDGTIKNAVK 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP E R TAC+SSQVGC L C+FCAT + RNL++ EIV QV
Sbjct: 87 LHDGNVVESVLIPTE-----TRTTACISSQVGCSLDCTFCATAQLKRMRNLTAAEIVDQV 141
Query: 150 LAIE----EIFKHRVTNVVFMGMGEPMLNLKSVLEAHR--CLNKDVQIGQRMITISTVGV 203
+ I+ E F ++N+VFMGMGEP+LN V+EA + L + + + R IT+ST G+
Sbjct: 142 VIIDRESREYFDRPLSNIVFMGMGEPLLNYTEVVEAIKKITLPEGLGMSPRRITLSTSGI 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
P I+KLA L+ LA+ +++ + + +L + L W
Sbjct: 202 PKMIEKLADEDLKIGLAVSLHSAREEIRNKIMPFSVKFPLTDLLKSLQYWYDTTKSKITF 261
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VN+I +N I+ YQ+ + + A+ ALE +
Sbjct: 262 EYIVWKDINDKKEDIDALVRFCKRVPSKVNIIEYNTIDDGPYQQASPQVLNAYIDALEKN 321
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQK 307
I ++R++RG D AACGQL N+ K
Sbjct: 322 GIIVNVRRSRGKDIDAACGQLANKTTK 348
>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|421464220|ref|ZP_15912910.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|400204973|gb|EJO35954.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
Length = 411
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 137/285 (48%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G +R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGDGAGSLVETVLIPAEDKTG-LRKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLAIEEIFKH---------RVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ + + VTNVV MGMGEP+LN +VL + +
Sbjct: 160 QRDLTPDEIIGQLWVANQSYMEDVPVAERTRSVTNVVMMGMGEPLLNYDAVLSSMYIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELVPINKKYPLAQL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVND +EHA ++ LL +NLIPFNP
Sbjct: 280 IAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQMIRLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + ++AF AL +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 382
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y LQ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLQMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|404403282|ref|ZP_10994866.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas fuscovaginae
UPB0736]
Length = 377
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 137/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 73 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 127
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A R + D+
Sbjct: 128 NLTAAEVIGQVWIANKSFGSIPASIDRAITNVVMMGMGEPLLNFDNVIAAMRLMMDDLGY 187
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I LA +
Sbjct: 188 GISKRRVTLSTSGVVPMIDVLAEHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 247
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ TL + VNDQVEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 248 RRYMDTLGEKRVLTVEYTLLKDVNDQVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 305
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 306 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 343
>gi|402494787|ref|ZP_10841524.1| ribosomal RNA large subunit methyltransferase N [Aquimarina
agarilytica ZC1]
Length = 350
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 146/293 (49%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
L E + + + + + ++DGT+K ++L D ++E+V IP R TACVSSQV
Sbjct: 62 LLETHFVINHIRVDQMQRSSDGTIKNAVRLHDGLVVESVLIPT-----ATRTTACVSSQV 116
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C FCAT + RNL+ EI QV+AI+ H ++N+VFMGMGEP++N
Sbjct: 117 GCSLDCKFCATARLKRMRNLNPDEIYDQVVAIDNESRLYHNHPLSNIVFMGMGEPLMNYN 176
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQV---- 230
+V++A + +G + IT+ST GVP IKK+A ++ LA+ D+V
Sbjct: 177 NVIKAIDKITSTEGLGMSPKRITVSTSGVPKIIKKMADDGVRFQLAVSLHSAIDEVRTQI 236
Query: 231 ----EH--AVELAELLHEWGRGHH---------------------------------VNL 251
EH +L E L W VNL
Sbjct: 237 MPFNEHFPLTDLREALEYWYEKTQSRITYEYVVWKGINDKKKDIDALVRFCMYVPCKVNL 296
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ ++Q+ +AV + ALE KI ++R++RG D AACGQL N+
Sbjct: 297 IEYNPIDDGEFQQASNEAVDNYIKALEKRKIVVNVRRSRGKDIDAACGQLANK 349
>gi|325662241|ref|ZP_08150856.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471493|gb|EGC74714.1| ribosomal RNA large subunit methyltransferase N [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 358
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 137/278 (49%), Gaps = 54/278 (19%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
R V+A DGT K L +L D ++E+V + + + C+SSQVGC + C FCA+ G
Sbjct: 73 RQVSAMDGTNKFLFRLSDGHVVESVLMKYKHGN-----SVCISSQVGCRMGCRFCASTIG 127
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIG 192
G RNL+ E++GQ+ I+ I RV NVV MG GEP+ N +++L+ + L + + I
Sbjct: 128 GLERNLTPSEMLGQIYQIQRISGERVANVVVMGTGEPLDNYENLLKFIQMLTDEHGLHIS 187
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLAIR------------------------------ 222
QR +T+ST G+ + +LA LQ TLA+
Sbjct: 188 QRNVTVSTCGIVPKMLELAEEHLQITLALSLHGSTQEKRKKLMPVANKYELSEVLEACDI 247
Query: 223 ---------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
GVND E A EL+ LL + H+NLIP NPI+ D++RP +
Sbjct: 248 YFAKTGRRMTFEYSLVHGVNDTEEDAKELSALLSH--KNCHINLIPVNPIKERDFERPTR 305
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
+A F LE I +IR+ G D ACGQLR +
Sbjct: 306 EAAEKFKNKLEKSGINVTIRREMGSDIDGACGQLRKRY 343
>gi|160947211|ref|ZP_02094378.1| hypothetical protein PEPMIC_01144 [Parvimonas micra ATCC 33270]
gi|158446345|gb|EDP23340.1| 23S rRNA m2A2503 methyltransferase [Parvimonas micra ATCC 33270]
Length = 348
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 141/299 (47%), Gaps = 54/299 (18%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
+ +P+ L+E G+ + + D T K LIKL DNR+IETV +
Sbjct: 49 KQLPKVLIEKLKEIGYINTSSIYTKYESKLDNTKKYLIKLFDNRIIETVFMDY-----GS 103
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
T C+SSQVGC + C+FCA+ K F RNL+S E++ Q+ IE + NVV MG+GE
Sbjct: 104 YCTVCISSQVGCRMGCTFCASTKENFKRNLTSGEMLNQIYLIENDLNLTINNVVIMGIGE 163
Query: 171 PMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222
P+ N +V+ + +N K + R ITIST G+ + I KLA KL TL I
Sbjct: 164 PLDNYNNVIGFLKIINSEKGKNLSLRNITISTCGLVHNIYKLADEKLPITLTISLHNPFQ 223
Query: 223 ---------------------------------------SAGVNDQVEHAVELAELLHEW 243
G ND EHA+EL +L
Sbjct: 224 KERREIMPISDNFSIDEILKACKYYFDKTSRRVSFEYTIIKGQNDSREHALELKNILK-- 281
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G H+N+IP N I+ D P K + +F LE++ I +IR+ +G D + ACGQLR
Sbjct: 282 GLNCHINIIPLNSIKEFDGVAPSTKYIYSFKSMLENYGINATIRKKQGDDINGACGQLR 340
>gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
Length = 352
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 147/278 (52%), Gaps = 60/278 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +KL D++++E+V IP R+TACVSSQVGC L C+FCAT + R
Sbjct: 77 SSDGTIKNAVKLYDDKIVESVLIPT-----SKRITACVSSQVGCSLDCNFCATARLKRMR 131
Query: 139 NLSSHEIVGQVLAI----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ- 193
NL+ EI QV+AI E+ F+ +TN+VFMGMGEP+LN +VL A + +G
Sbjct: 132 NLNPDEIYDQVVAIKEEAEKYFERPLTNIVFMGMGEPLLNYANVLAAIDKITSPEGLGMA 191
Query: 194 -RMITISTVGVPNTIKKLASYKLQSTLAI-----------RSAGVNDQ--VEHAVELAEL 239
R IT+STVGV I+K+A +++ LA+ R +ND VE EL E
Sbjct: 192 ARRITLSTVGVTKMIRKMADDEVKFNLAVSLHSAINETRSRLMPINDSNPVE---ELGES 248
Query: 240 LHEW----GRG-----------------------------HHVNLIPFNPIEGSDYQRPY 266
L W GR VN+I +NPI+ ++++
Sbjct: 249 LKYWYKKTGRKVTYEYVIWDGVNDDERHARALAKFCKLIPSKVNIIQYNPIDEGEFRQAK 308
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
++AV + LES + +R++RG D AACGQL N+
Sbjct: 309 QEAVDMYIRVLESQGVIAKVRKSRGQDIDAACGQLANK 346
>gi|15640776|ref|NP_230406.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|360034664|ref|YP_004936427.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|379740604|ref|YP_005332573.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|417812800|ref|ZP_12459457.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|417815665|ref|ZP_12462297.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|418331799|ref|ZP_12942739.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|418336563|ref|ZP_12945461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|418343056|ref|ZP_12949850.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|418348225|ref|ZP_12952959.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|418354747|ref|ZP_12957468.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|419825217|ref|ZP_14348722.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|421316095|ref|ZP_15766666.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|421320395|ref|ZP_15770952.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|421324391|ref|ZP_15774917.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|421328052|ref|ZP_15778566.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|421331070|ref|ZP_15781550.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|421334645|ref|ZP_15785112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|421338538|ref|ZP_15788973.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|421346881|ref|ZP_15797263.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|422890860|ref|ZP_16933268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|422901735|ref|ZP_16937095.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|422905960|ref|ZP_16940802.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|422912555|ref|ZP_16947078.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|422921978|ref|ZP_16955180.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|422925036|ref|ZP_16958065.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|423144356|ref|ZP_17131969.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|423149008|ref|ZP_17136366.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|423152853|ref|ZP_17140050.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|423155662|ref|ZP_17142770.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|423159493|ref|ZP_17146464.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|423164180|ref|ZP_17150965.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|423730312|ref|ZP_17703629.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|423749156|ref|ZP_17711643.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|423892030|ref|ZP_17725716.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|423926805|ref|ZP_17730332.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|424001360|ref|ZP_17744448.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|424005516|ref|ZP_17748499.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|424023527|ref|ZP_17763190.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|424026330|ref|ZP_17765945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|424585655|ref|ZP_18025248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|424594351|ref|ZP_18033688.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|424598216|ref|ZP_18037413.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|424600969|ref|ZP_18040125.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|424605949|ref|ZP_18044913.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|424609782|ref|ZP_18048639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|424612585|ref|ZP_18051391.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|424616406|ref|ZP_18055096.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|424621344|ref|ZP_18059871.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|424644321|ref|ZP_18082074.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|424651965|ref|ZP_18089486.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|424655912|ref|ZP_18093213.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|440709044|ref|ZP_20889702.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443502858|ref|ZP_21069846.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443506771|ref|ZP_21073560.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443510878|ref|ZP_21077541.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443514440|ref|ZP_21080978.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443518253|ref|ZP_21084669.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443523120|ref|ZP_21089359.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443530752|ref|ZP_21096767.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443534509|ref|ZP_21100420.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443538101|ref|ZP_21103956.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|449056719|ref|ZP_21735387.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
gi|81623203|sp|Q9KTX3.1|RLMN_VIBCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|340041391|gb|EGR02357.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|340042104|gb|EGR03069.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|341624720|gb|EGS50204.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|341625937|gb|EGS51358.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|341626532|gb|EGS51905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|341640341|gb|EGS64931.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|341647343|gb|EGS71426.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|341648033|gb|EGS72100.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|356419961|gb|EHH73491.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|356420909|gb|EHH74417.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|356425758|gb|EHH79104.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|356432141|gb|EHH85338.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|356433744|gb|EHH86929.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|356437494|gb|EHH90583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|356442563|gb|EHH95402.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|356446964|gb|EHH99754.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|356449792|gb|EHI02530.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|356453149|gb|EHI05812.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|356456125|gb|EHI08736.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|356645818|gb|AET25873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|378794114|gb|AFC57585.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|395920061|gb|EJH30883.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|395921052|gb|EJH31872.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|395923377|gb|EJH34188.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|395929558|gb|EJH40307.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|395932334|gb|EJH43077.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|395936506|gb|EJH47229.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|395943486|gb|EJH54160.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|395945941|gb|EJH56605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|395961834|gb|EJH72144.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|395963271|gb|EJH73543.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|395965953|gb|EJH76089.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|395974209|gb|EJH83742.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|395977203|gb|EJH86622.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|395978636|gb|EJH88011.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|408009242|gb|EKG47157.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|408016022|gb|EKG53583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|408036554|gb|EKG72979.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|408044443|gb|EKG80361.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|408046037|gb|EKG81758.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|408056511|gb|EKG91389.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|408610754|gb|EKK84119.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|408626825|gb|EKK99659.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|408639974|gb|EKL11776.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|408657806|gb|EKL28882.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|408658862|gb|EKL29920.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|408847951|gb|EKL88007.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|408848879|gb|EKL88915.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|408872904|gb|EKM12112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|408880917|gb|EKM19832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|439975344|gb|ELP51467.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443432755|gb|ELS75277.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443436580|gb|ELS82698.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443440142|gb|ELS89832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443444236|gb|ELS97511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443448074|gb|ELT04710.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443450848|gb|ELT11113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443457835|gb|ELT25231.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443462293|gb|ELT33333.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443465690|gb|ELT40349.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|448263887|gb|EMB01127.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
Length = 373
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA--------------- 220
G +R +T+ST GV + ++++ + KL+S +
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAELL G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|430750392|ref|YP_007213300.1| 2-vinyl bacteriochlorophyllide hydratase [Thermobacillus composti
KWC4]
gi|430734357|gb|AGA58302.1| 23S rRNA m2A2503 methyltransferase [Thermobacillus composti KWC4]
Length = 347
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 153/306 (50%), Gaps = 58/306 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P++ R L EA V I R +T+ DGTVK L L DN IETV + + +
Sbjct: 48 LPKALRAKLDEAFAFVALSEITR-LTSKDGTVKYLFGLHDNHAIETVVM-----RHNYGI 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMG 169
+ CV++QVGC + C+FCA+ GG RNL++ EIV QV+ +++ R+ ++V MG G
Sbjct: 102 SICVTTQVGCRIGCTFCASTLGGLKRNLTAGEIVAQVVTAQQMLDETVERIASIVIMGSG 161
Query: 170 EPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI------ 221
EP N + ++ R + K + IGQR IT+ST G+ I + A Q LAI
Sbjct: 162 EPFENYDATMKFLRIVTHAKGLNIGQRHITVSTSGIVPNIYRFADENTQINLAISIHAPN 221
Query: 222 ---RS------------------------------------AGVNDQVEHAVELAELLHE 242
RS GVND+ EHA ELA++L+
Sbjct: 222 DALRSKLMPVNRRYPFDEVMEAIRYYIAKTGRRVTFEYALIGGVNDRPEHAEELADVLN- 280
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP N + Y R ++ + AF L+S I +IR+ +G D +AACGQLR
Sbjct: 281 -GMLCHVNLIPVNYVPERKYVRTPREDIFAFHRILQSRGINATIRREQGHDIAAACGQLR 339
Query: 303 NEFQKS 308
+ +S
Sbjct: 340 AKHMES 345
>gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
Length = 374
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKK------------------------------------LASY 213
G +R +T+ST GV + + + LAS
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSDIMPINDRWDIEDFLASV 250
Query: 214 K--LQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +QS+ A R VND ++HA ELAELL + +NLIPFNP GS Y
Sbjct: 251 RRYIQSSNANRGKVTVEYVLLDHVNDDMDHARELAELLKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
Length = 374
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080936|ref|YP_002809487.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
M66-2]
gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|384423989|ref|YP_005633347.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|417820180|ref|ZP_12466794.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|417823870|ref|ZP_12470461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|419829369|ref|ZP_14352855.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|419832339|ref|ZP_14355801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|419835669|ref|ZP_14359113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|421342513|ref|ZP_15792919.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|421350580|ref|ZP_15800945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|421353555|ref|ZP_15803887.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|422306247|ref|ZP_16393429.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|422916540|ref|ZP_16950876.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|423734032|ref|ZP_17707246.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|423818058|ref|ZP_17715479.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|423850017|ref|ZP_17719268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|423879140|ref|ZP_17722873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|423950223|ref|ZP_17733663.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|423977919|ref|ZP_17737211.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|423996962|ref|ZP_17740223.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|424008316|ref|ZP_17751265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|424015666|ref|ZP_17755511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|424018605|ref|ZP_17758403.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|424589995|ref|ZP_18029441.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|424624146|ref|ZP_18062621.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|424628642|ref|ZP_18066945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|424632676|ref|ZP_18070790.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|424635765|ref|ZP_18073784.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|424639680|ref|ZP_18077574.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|424647742|ref|ZP_18085416.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|429884994|ref|ZP_19366599.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443526528|ref|ZP_21092607.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
gi|254807221|sp|C3LT10.1|RLMN_VIBCM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|340037811|gb|EGQ98785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|340047555|gb|EGR08478.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|341640017|gb|EGS64620.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|395945264|gb|EJH55934.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|395951025|gb|EJH61639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|395952680|gb|EJH63293.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|408015207|gb|EKG52801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|408020588|gb|EKG57884.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|408026436|gb|EKG63443.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|408026850|gb|EKG63844.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|408035820|gb|EKG72275.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|408036323|gb|EKG72761.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|408058508|gb|EKG93304.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|408620954|gb|EKK93957.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|408626931|gb|EKK99760.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|408631478|gb|EKL04018.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|408636371|gb|EKL08519.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|408643360|gb|EKL15085.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|408644484|gb|EKL16168.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|408650983|gb|EKL22239.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|408661139|gb|EKL32132.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|408665931|gb|EKL36737.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|408854015|gb|EKL93785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|408858423|gb|EKL98097.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|408861652|gb|EKM01225.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|408865756|gb|EKM05148.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|408869611|gb|EKM08905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|429228326|gb|EKY34254.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443455091|gb|ELT18879.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
Length = 373
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA--------------- 220
G +R +T+ST GV + ++++ + KL+S +
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAELL G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|94501127|ref|ZP_01307650.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
gi|94426703|gb|EAT11688.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
Length = 378
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 153/329 (46%), Gaps = 64/329 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W + G V + R L++ +F ++ DGT K +
Sbjct: 29 PFRAQQILKWIHQVGIDNFDDMTN-VSKVMREKLKDVATVQYPEVVFHDISK-DGTKKWV 86
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+++ +ETV IP D R T CVSSQ+GC L CSFC+TGK GF+R+LS EI+G
Sbjct: 87 MRMPGGSSVETVYIPEGD-----RGTLCVSSQIGCSLDCSFCSTGKQGFNRDLSVAEIIG 141
Query: 148 QVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + F + ++TNVV MGMGEP++N +V++A + D G +R +T+
Sbjct: 142 QVYVAAKSFDKPGEKRERKITNVVMMGMGEPLMNFDNVVDAMDLMMDDFCYGLSKRRVTL 201
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLAIRS-------- 223
ST GV + LA Y ++ +A +
Sbjct: 202 STSGVVPKLYDLADVSDVSLAVSLHAPNDELRNELVPINKKYPIKDLMAACNHYMGSLSD 261
Query: 224 -----------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
VND++EHA +LA+LL + +NLIPFNP S Y+RP V
Sbjct: 262 RRKLTVEYTLINKVNDELEHAQQLAKLLKDT--PCKINLIPFNPFPNSGYERPSNNRVYK 319
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQL 301
F L S +IR TRG D AACGQL
Sbjct: 320 FRDYLHSQGFIVTIRTTRGDDIDAACGQL 348
>gi|224003697|ref|XP_002291520.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973296|gb|EED91627.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 343
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 148/326 (45%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R RQ W G + +P R L+E TVG L + + DGT K K
Sbjct: 22 RARQIHNWIFSQGVTSIDDMS-DLPLKLRTMLKERA-TVGSLHLEVEQVSQDGTRKRAYK 79
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IE+V +P ED R TACVSSQ GC + C FCATG+ GF+R L+S EI QV
Sbjct: 80 LHDGQMIESVLMPYEDG----RRTACVSSQAGCAMGCVFCATGQMGFARQLTSDEIFEQV 135
Query: 150 LAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNT 206
K R++NVV MGMGEP+ N ++VL A +N D+ IG R ITISTVGV
Sbjct: 136 ATFANELKGEGERLSNVVMMGMGEPLANYRNVLAAMHRMNTDLGIGARKITISTVGVVPN 195
Query: 207 IKKLASYKLQSTLAI---------RSA--------------------------------- 224
IKKL LQ LA+ R+A
Sbjct: 196 IKKLIEEDLQVRLALSLHCATDEERTALLPANRRYGGLDELMTTIREYIRVKKMRVTFEW 255
Query: 225 ----GVNDQVEHAVELAELLHEWG---RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
G ND + A L LL + HVNLIP NP G + V F L
Sbjct: 256 ALIEGQNDSKDVARTLGRLLQKHDIRPDMAHVNLIPLNPTGGYGGGPSGRNNVHRFVEVL 315
Query: 278 ESH-KITTSIRQTRGLDASAACGQLR 302
E I+ + R RG+D A CGQL+
Sbjct: 316 EKEFGISATPRMRRGIDIDAGCGQLK 341
>gi|424743184|ref|ZP_18171497.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
gi|422943445|gb|EKU38461.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
Length = 411
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G +R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGDGAGSLVETVLIPAEDKTG-LRKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLA-----IEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ +EE+ + VTNVV MGMGEP+LN +VL + + +
Sbjct: 160 QRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVMMGMGEPLLNYDAVLSSMQIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELVPINKKYPLAQL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVNDQ EHA ++ +LL +NLIPFNP
Sbjct: 280 IAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQMIKLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + +++F L +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|88858483|ref|ZP_01133125.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas tunicata D2]
gi|88820100|gb|EAR29913.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas tunicata D2]
Length = 392
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 148/303 (48%), Gaps = 62/303 (20%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
AADGT+K + LE + +ETV IP ++ R T CVSSQVGC L C+FC+T + GF+
Sbjct: 89 VAADGTIKYALLLEGGQEVETVWIPEKE-----RATLCVSSQVGCALECTFCSTAQQGFN 143
Query: 138 RNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL EI+GQV + + + VTNVV MGMGEP+LN+ +V+ A + D
Sbjct: 144 RNLKVSEIIGQVWRVAKDIGLYGDSTRRPVTNVVMMGMGEPLLNINNVVPAMELMMDDWA 203
Query: 191 IG--QRMITISTVGV----------------------PNTIKKL-----ASYKLQSTLA- 220
G +R +T+ST GV N ++ + Y ++ LA
Sbjct: 204 FGLSKRRVTLSTSGVVPALDILKERIDVALAISLHAPDNALRDVLVPINKKYPIEEFLAA 263
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ G+ND +E A +L E L G VNLIPFNP G++Y
Sbjct: 264 CRRYIDGSKANKDVTVEYVMLDGINDSMEQAHQLVETLK--GTPSKVNLIPFNPFPGNEY 321
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + F+ L++ IT +R+TRG D AACGQL + R+ E++
Sbjct: 322 GRSSNSRIDRFSKILQAAGITCIVRRTRGDDIDAACGQLVGDVVDRTKRLAKRQLQKENE 381
Query: 323 IAV 325
IAV
Sbjct: 382 IAV 384
>gi|402698607|ref|ZP_10846586.1| hypothetical protein PfraA_02215 [Pseudomonas fragi A22]
Length = 382
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 137/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 STDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATADRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I +LA +
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRSQLVPINKKYPLKMLLESC 252
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ STL + +ND VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSTLGEKRVLTVEYTMLKDINDHVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|385216579|ref|YP_005776536.1| hypothetical protein HPF32_1312 [Helicobacter pylori F32]
gi|317181108|dbj|BAJ58894.1| hypothetical protein HPF32_1312 [Helicobacter pylori F32]
Length = 357
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS+++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSNFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|299771620|ref|YP_003733646.1| hypothetical protein AOLE_16930 [Acinetobacter oleivorans DR1]
gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter oleivorans DR1]
Length = 411
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G +R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGDGAGSLVETVLIPAEDKTG-LRKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLA-----IEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ +EE+ + VTNVV MGMGEP+LN +VL + + +
Sbjct: 160 QRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVMMGMGEPLLNYDAVLSSMQIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELVPINKKYPLAQL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVNDQ EHA ++ +LL +NLIPFNP
Sbjct: 280 IAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQMIKLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + +++F L +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
Length = 377
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 81 SADGTIKWAMRVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 134
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 135 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 194
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA--------------- 220
G +R +T+ST GV + ++++ + KL+S +
Sbjct: 195 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVV 254
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAELL G +NLIPFNP GS Y
Sbjct: 255 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLK--GTPCKINLIPFNPYPGSPY 312
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 313 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 351
>gi|422297377|ref|ZP_16385015.1| radical SAM enzyme, Cfr family [Pseudomonas avellanae BPIC 631]
gi|422587126|ref|ZP_16661797.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422652852|ref|ZP_16715629.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|407991223|gb|EKG33126.1| radical SAM enzyme, Cfr family [Pseudomonas avellanae BPIC 631]
Length = 382
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 139/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 STDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y LQ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLQMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|392543678|ref|ZP_10290815.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
piscicida JCM 20779]
Length = 378
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 149/305 (48%), Gaps = 67/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 78 ASDGTIKYALLLEGGQEVETVWIPEKD-----RATLCVSSQVGCALECTFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAI-EEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
NL EI+GQV + +I H+ +TN+V MGMGEP+LNL +V+ A + D
Sbjct: 133 NLKVSEIIGQVWRVATDIGLHKGDSTKRPITNIVMMGMGEPLLNLNNVVPAMELMMDDWA 192
Query: 191 IG--QRMITISTVGV---------------------PNT--------IKKLASYKLQSTL 219
G +R +T+ST GV PN I K Y ++ L
Sbjct: 193 FGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNPLRDVLVPINK--KYPIEEFL 250
Query: 220 A-------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
A + VND +HA EL E+L G +NLIPFNP G+
Sbjct: 251 AACRRYIDGSKANKDVTIEYVMLQDVNDSTDHAHELVEVLK--GTPSKINLIPFNPFPGN 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSE 320
+Y R + F+ L++ +T +R+TRG D AACGQL + R+ +
Sbjct: 309 EYGRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVVDRTKRLAKKKQRDD 368
Query: 321 SDIAV 325
+ IAV
Sbjct: 369 NAIAV 373
>gi|359437404|ref|ZP_09227469.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20311]
gi|359447503|ref|ZP_09237097.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20439]
gi|358027909|dbj|GAA63718.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20311]
gi|358038601|dbj|GAA73346.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20439]
Length = 376
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 146/302 (48%), Gaps = 62/302 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +E V IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 77 ASDGTIKYALVLEGGQEVEAVWIPEKD-----RATLCVSSQVGCALECTFCSTAQQGFNR 131
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + + K VTNVV MGMGEP+LN+K+V+ A + D
Sbjct: 132 NLKVSEIIGQVWRVAKDIGLDGNSEKRPVTNVVMMGMGEPLLNVKNVVPAMELMMDDWGF 191
Query: 192 G--QRMITISTVGV----------------------PNTIKKL-----ASYKLQSTLA-- 220
G +R +T+ST GV N ++ + Y ++ LA
Sbjct: 192 GLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPINKKYPIEEFLAAC 251
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ GVND + A EL + L G VNLIPFNP G++Y
Sbjct: 252 RRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELVKTLK--GTPSKVNLIPFNPFPGNEYT 309
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESDI 323
R + F+ L++ IT +R+TRG D AACGQL + R+ E+ I
Sbjct: 310 RSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACGQLAGDVVDRTKRMAKKKMRDENAI 369
Query: 324 AV 325
AV
Sbjct: 370 AV 371
>gi|384899659|ref|YP_005775039.1| hypothetical protein HPF30_1294 [Helicobacter pylori F30]
gi|317179603|dbj|BAJ57391.1| hypothetical protein HPF30_1294 [Helicobacter pylori F30]
Length = 357
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLIDNHTFEAVFLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV N I LA L LAI RS+
Sbjct: 198 KRITISTSGVANKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|168702822|ref|ZP_02735099.1| hypothetical protein GobsU_25056 [Gemmata obscuriglobus UQM 2246]
Length = 355
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 154/312 (49%), Gaps = 64/312 (20%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ R DL A + V + + R A+D T K +++L D R+IE V I +D+ R
Sbjct: 41 LPKGLRADLAGA-FRVFSMSVERHFAASDDTHKFVLRLADGRMIEAVLI--QDDG---RA 94
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH---------RVTNV 163
TAC+S+QVGC + C FCA+G G RNL++ E+V Q++ + + R+T++
Sbjct: 95 TACISTQVGCGMGCVFCASGLNGVVRNLTAGEMVEQLVLLRNLTDANSTNPERAPRLTHI 154
Query: 164 VFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAI 221
V MGMGEP+ NL ++L+A + IG R +TISTVG+P I+KLA Q LA+
Sbjct: 155 VVMGMGEPLANLDNLLDALAVAGDKNGLGIGARHVTISTVGLPAKIRKLAESGKQYHLAV 214
Query: 222 R---------------------------------------------SAGVNDQVEHAVEL 236
G+NDQ HA +L
Sbjct: 215 SLHAPNDELRTRIVPTNDKVGMDAILAAADEFYEKTGRQVTYEYVVLGGLNDQAPHARQL 274
Query: 237 AELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASA 296
A LL GR HVNLIP+N +EG ++RP + L I+ +R+ +G + A
Sbjct: 275 AGLLR--GRQAHVNLIPWNAVEGLAFKRPADADLQYLIDTLRRGGISVKVRKRKGAEIDA 332
Query: 297 ACGQLRNEFQKS 308
ACGQLR + + +
Sbjct: 333 ACGQLRRQAEAA 344
>gi|389704826|ref|ZP_10185930.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
gi|388611070|gb|EIM40179.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
Length = 411
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 138/285 (48%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDNR--LIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGS-RKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+LS EI+GQ+ + + VTNVV MGMGEP+LN +VL + R +
Sbjct: 160 QRDLSQAEIIGQLWMANYSYMEDVPVAERERSVTNVVMMGMGEPLLNYDAVLSSMRIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L+
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELVPINKKYPLEHL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVND+ EHA ++ +LL +NLIPFNP
Sbjct: 280 IAACQRYITKDGNESARKHVTIEYVMLDGVNDKPEHAQQMIKLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + +++F L +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Xenopus (Silurana) tropicalis]
Length = 328
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 149/310 (48%), Gaps = 63/310 (20%)
Query: 55 QSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTA 114
+S R LQ+ G LP+ +ADGTVK L + +ETV IP ED++G T
Sbjct: 6 KSLREKLQDRACITG-LPVLTEQASADGTVKWLFDVGGGNAVETVFIP-EDDRG----TL 59
Query: 115 CVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMG 167
CVSSQ GC + C FC+TG GFSRNLS+ EI+ Q+ E + R ++NVV MG
Sbjct: 60 CVSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQRLGSSERVISNVVMMG 119
Query: 168 MGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLA-------------- 211
MGEP+ N +++ A R + D G +R +T+ST GV +++LA
Sbjct: 120 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLALDCPVALAVSLHAP 179
Query: 212 -------------SYKLQSTL--AIRS----------------AGVNDQVEHAVELAELL 240
Y L+ L +R GVNDQ EHA +L +L+
Sbjct: 180 NDALRDHLVSLNRKYPLEELLQTCVRYLDHAPRDFITFEYCMLDGVNDQPEHAQQLIQLV 239
Query: 241 HEWGRGH---HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAA 297
+G NLIPFNP S R + V FA L I T++R+TRG D AA
Sbjct: 240 RGHAQGKVWCKFNLIPFNPFPESGLVRSPPQRVSGFARLLSDAGIVTTVRKTRGDDIDAA 299
Query: 298 CGQLRNEFQK 307
CGQL E +
Sbjct: 300 CGQLAGEVKD 309
>gi|397696914|ref|YP_006534797.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
DOT-T1E]
gi|421524502|ref|ZP_15971124.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
LS46]
gi|397333644|gb|AFO50003.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
DOT-T1E]
gi|402751681|gb|EJX12193.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
LS46]
Length = 381
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 135/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +I++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVIRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVIAAMKIMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|91225141|ref|ZP_01260363.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
gi|91190084|gb|EAS76355.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
Length = 375
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND+++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDEMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
gi|205829923|sp|A1WE19.1|RLMN_VEREI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
Length = 391
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 140/290 (48%), Gaps = 59/290 (20%)
Query: 72 PIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCAT 131
P+ +ADG+VK L + +E V IP EDE+G T CVSSQ GC + C FC+T
Sbjct: 67 PVISGQASADGSVKWLFDVGAGNAVEAVFIP-EDERG----TLCVSSQAGCAVGCRFCST 121
Query: 132 GKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRC 184
G GFSRNLSS EI+ Q+ E + R ++N+V MGMGEP+ NL ++L A R
Sbjct: 122 GHQGFSRNLSSGEIIAQLWFAEHALRRRLKTEDRVISNLVMMGMGEPLQNLAALLPALRV 181
Query: 185 LNKDVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKL 215
+ D G +R +T+ST GV I +LA Y +
Sbjct: 182 MLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSLHAPNDALRDQLVPLNRKYPI 241
Query: 216 QSTL---------AIRS---------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPI 257
L A R GVNDQ+ HA +L EL+ NLIPFNP
Sbjct: 242 DELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLVELVGRAAIRCKFNLIPFNPF 301
Query: 258 EGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
S R +LAFA L + I T++R+TRG D +AACGQL + +
Sbjct: 302 PASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIAAACGQLAGDVRD 351
>gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440]
gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1]
gi|386010513|ref|YP_005928790.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
BIRD-1]
gi|395447288|ref|YP_006387541.1| radical SAM enzyme, Cfr family [Pseudomonas putida ND6]
gi|81586431|sp|Q88PK0.1|RLMN_PSEPK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829824|sp|A5VYT2.1|RLMN_PSEP1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida
KT2440]
gi|148510182|gb|ABQ77042.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas putida F1]
gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
BIRD-1]
gi|388561285|gb|AFK70426.1| radical SAM enzyme, Cfr family [Pseudomonas putida ND6]
Length = 381
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 135/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +I++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVIRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVIAAMKIMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKVLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|422671333|ref|ZP_16730699.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
str. M302273]
gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
str. M302273]
Length = 382
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 152/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I + S+
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERYIAVRDLSA 370
Query: 320 ESDIA 324
E+D A
Sbjct: 371 EADAA 375
>gi|71278436|ref|YP_270905.1| ribosomal RNA large subunit methyltransferase N [Colwellia
psychrerythraea 34H]
gi|123774847|sp|Q47WB7.1|RLMN_COLP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71144176|gb|AAZ24649.1| radical SAM enzyme, Cfr family [Colwellia psychrerythraea 34H]
Length = 386
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 153/330 (46%), Gaps = 66/330 (20%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W G S + + + R LQ + I + DGT+K
Sbjct: 29 PFRADQIMKWIYHFGYSDFEQMTN-INKKLREKLQR-NCIISAPDISEKQVSEDGTIKYA 86
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+KLE + +ETV IP D R T CVSSQVGC L C+FCAT + GF+RNLS EI+G
Sbjct: 87 LKLEGGQEVETVWIPEND-----RATLCVSSQVGCALECTFCATAQQGFNRNLSMAEIIG 141
Query: 148 QVLAI-EEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + +I R +TN+V MGMGEP+LN+K+++ A + D+ G +R +T+
Sbjct: 142 QVWRVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTV 201
Query: 199 STVGVPNTIKKLASYKLQSTLAIR--------------------------SAG------- 225
ST GV + L + K+ LAI +AG
Sbjct: 202 STSGVVPALDMLKA-KIDCALAISIHAPNNKLRDELVPINKKYPLEDFIAAAGRYIEGSK 260
Query: 226 --------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
VND + A ELA L G +NLIPFNP GS Y R +
Sbjct: 261 ANKQATIEYVMLDHVNDSTDQAHELAHALK--GLPSKINLIPFNPYPGSPYSRSSNSRID 318
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQL 301
F L+S+ +T R+TRG D AACGQL
Sbjct: 319 RFDKVLQSYGLTVITRRTRGEDIDAACGQL 348
>gi|375264584|ref|YP_005022027.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. EJY3]
gi|369839908|gb|AEX21052.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. EJY3]
Length = 375
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREVGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|385222781|ref|YP_005771914.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori SouthAfrica7]
gi|317011560|gb|ADU85307.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori SouthAfrica7]
Length = 357
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 159/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIASLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EIV Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIVQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LAS L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILASKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKNLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|433656884|ref|YP_007274263.1| Ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus BB22OP]
gi|432507572|gb|AGB09089.1| Ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus BB22OP]
Length = 375
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|358010804|ref|ZP_09142614.1| UPF0063 protein yfgB [Acinetobacter sp. P8-3-8]
Length = 411
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 141/285 (49%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G +R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGDGDGSLVETVLIPAEDKTG-LRKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLA-----IEEIF----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ +E++ + VTNVV MGMGEP+LN +VL + +
Sbjct: 160 QRDLTPDEIIGQLWVANYSYMEDVAVAERERSVTNVVMMGMGEPLLNYDAVLSSMHIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L+
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELVPINKKYPLEQL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVNDQ EHA ++ +LL +NLIPFNP
Sbjct: 280 IAACQRYIGKDGNESSRKHVTIEYVMLEGVNDQPEHAQQMIKLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + +++F L +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
Length = 374
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMRVGDQD-VETVYIPDDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREVGLEKETGRRPITNVVMMGMGEPLLNMKNLMPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA--------------- 220
G +R +T+ST GV + + ++ + KL+S +
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGEIDVALAISLHAPNDKLRSEIMPINDRWDIEDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAELL + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELLKD--TPAKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L + T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFMKTLMQYDYTVTVRKTRGDDIDAACGQL 347
>gi|158522322|ref|YP_001530192.1| radical SAM protein [Desulfococcus oleovorans Hxd3]
gi|205829745|sp|A8ZV25.1|RLMN_DESOH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|158511148|gb|ABW68115.1| radical SAM enzyme, Cfr family [Desulfococcus oleovorans Hxd3]
Length = 371
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 156/332 (46%), Gaps = 64/332 (19%)
Query: 28 PSRGRQRAPW---HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTV 84
P R Q W H + +PV R L E+ + +GRL I RT +ADGT
Sbjct: 47 PYRADQVFKWLFVHRAESFDQMTNISKPV----RTLLAES-FIIGRLKIARTQQSADGTR 101
Query: 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHE 144
K L +L D IE+V IP ED T CVS+QVGC C+FC T K GF RNL+ E
Sbjct: 102 KYLFELSDGEHIESVLIPEEDH-----FTLCVSTQVGCAQGCAFCMTAKKGFVRNLTPAE 156
Query: 145 IVGQVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCL---NKDVQIGQRMITIS 199
I GQVL + + R+TN+V MGMGEP+ N +V+ + + + +Q R +T+S
Sbjct: 157 ITGQVLGALKTLAPEERLTNIVLMGMGEPLANYDNVITSLDTICDGDCGLQFSTRRVTLS 216
Query: 200 TVG-VPN-------TIKKLA-------------------SYKLQSTLA------------ 220
T G VP T LA +Y ++ L
Sbjct: 217 TSGLVPRMAPLGLATTVNLAVSLNATDNKTRDMLMPINKTYPIEVLLEACRTYPLSNRRK 276
Query: 221 -----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
I AGVND + A+ L +LL VNLIPFN EG+ ++RP A+ F
Sbjct: 277 ITFEYILMAGVNDSEKDALRLVKLLRSI--KAKVNLIPFNEHEGAAFKRPDDAAIERFKQ 334
Query: 276 ALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
L + T RQ++G D SAACGQL + +K
Sbjct: 335 ILHDRQYTVMTRQSKGADISAACGQLAADIKK 366
>gi|392988680|ref|YP_006487273.1| ribosomal RNA large subunit methyltransferase N [Enterococcus hirae
ATCC 9790]
gi|392336100|gb|AFM70382.1| ribosomal RNA large subunit methyltransferase N [Enterococcus hirae
ATCC 9790]
Length = 357
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 144/282 (51%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 74 ATDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNIGCTFCASGLLKKNR 128
Query: 139 NLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
+L++ EIV Q++ ++ F RV++VV MG+GEP N +V+ +N K + I
Sbjct: 129 DLTAGEIVAQIMMVQHYFDERQEGERVSHVVVMGIGEPFDNYDNVMNFLHIINDAKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS----------- 223
G R IT+ST G+ N IK+ A LQ LAI RS
Sbjct: 189 GARHITVSTSGLANKIKEFADNGLQVNLAISLHAPNNEIRTSIMRINRSFPIEKLMAAVD 248
Query: 224 -----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND+ EHA +LA+LL + + +VNLIP+NP+ D Y R
Sbjct: 249 EYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLTYVNLIPYNPVSEHDQYSRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K VL F L+ + I IR+ G D AACGQLR++ K
Sbjct: 309 PKADVLKFYDVLKKNGINCVIRKEHGTDIDAACGQLRSKQMK 350
>gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48]
gi|122985951|sp|Q1IEI4.1|RLMN_PSEE4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila
L48]
Length = 379
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 136/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K ++++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVVRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + +D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAMKIMMEDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282691|gb|EDT48115.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 366
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 144/282 (51%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D+ LIETV + + L+ CV+SQVGC + CSFCA+G R
Sbjct: 80 ASDGTVKYLFELPDSMLIETVLM-----RQHYGLSVCVTSQVGCNIGCSFCASGLIKKQR 134
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+L+S EI Q++ +++ F RV++VV MG+GEP N +VL R +N D + I
Sbjct: 135 DLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDNGLAI 194
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
G R ITIST G+ + I++ A LQ LA+ RS
Sbjct: 195 GARHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFTAIE 254
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND E+A ELA+L + + ++NLIP+NP+ D Y+R
Sbjct: 255 YYIETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYRRS 314
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K+ V AF L+ + + +RQ G D AACGQLR+ K
Sbjct: 315 SKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMK 356
>gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1]
gi|205829825|sp|B0KPI4.1|RLMN_PSEPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1]
Length = 381
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 135/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +I++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVIRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVIAAMKIMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKVLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|420467737|ref|ZP_14966486.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-9]
gi|393082997|gb|EJB83711.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-9]
Length = 357
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SAKMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|420437820|ref|ZP_14936801.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-28]
gi|393051345|gb|EJB52297.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-28]
Length = 357
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIASLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS+++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSNFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SAKMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|24374826|ref|NP_718869.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
gi|81589118|sp|Q8EC29.1|RLMN_SHEON RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24349512|gb|AAN56313.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
Length = 373
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 148/303 (48%), Gaps = 64/303 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SADGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + +E + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFAKETGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND E A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + F+ L + +T +R+TRG D AACGQL + + R+ + E+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL-AKKRMQENQ 367
Query: 323 IAV 325
I+V
Sbjct: 368 ISV 370
>gi|420405745|ref|ZP_14904918.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY6271]
gi|393021564|gb|EJB22694.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY6271]
Length = 357
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILADKNLGVQLAISLHAVDDKTRSSLMPLNKRYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|384895196|ref|YP_005769185.1| Fe-S-cluster redox protein [Helicobacter pylori 35A]
gi|315585812|gb|ADU40193.1| Fe-S-cluster redox protein [Helicobacter pylori 35A]
Length = 357
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 160/338 (47%), Gaps = 66/338 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTV 84
PS ++ W + A K + + + +F D E +T+ + I + DG+
Sbjct: 19 PSFRAKQLYWWLYA---KYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSK 75
Query: 85 KLLIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKG 134
K L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KG
Sbjct: 76 KYLFKSLRDNHTFEAVFLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKG 135
Query: 135 GFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
GF RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 136 GFVRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQI 195
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 196 SPKRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVR 255
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP
Sbjct: 256 KWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPS 313
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
++ FA L S + +IR+++ LD AACGQLR +
Sbjct: 314 LESARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073]
gi|123752954|sp|Q2RK16.1|RLMN_MOOTA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC
39073]
Length = 354
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 161/331 (48%), Gaps = 65/331 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP---IFRTVTAADG-T 83
P RGRQ W + A +K +P++FR L V LP + + AADG T
Sbjct: 26 PYRGRQIFRW-LHARRAKGIEVMSDLPRAFRERLA----LVAELPPVRVLNRLVAADGLT 80
Query: 84 VKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSH 143
KLL+ L D IE V + +D G R TAC+SSQVGC + CSFCATG+GG RNL++
Sbjct: 81 RKLLLGLGDGNSIECVLMIYKD--GRRRNTACLSSQVGCAMGCSFCATGQGGLQRNLTAS 138
Query: 144 EIVGQVLAI-----EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QIGQRMI 196
EI+ Q LA+ E +R++N+VFMGMGEP+ N ++V++ R I R I
Sbjct: 139 EIILQALALGAELAEGEGGNRISNIVFMGMGEPLNNYEAVMKGVRIFEDPSGWGISHRRI 198
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIR---------------------------------- 222
T+ST G+ I++LA K LA+
Sbjct: 199 TLSTCGIVPGIERLAREKPPLELAVSLHAVTNELRDKLMPINRRYPLEELIPACRRYAEI 258
Query: 223 -----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
AGVND+ E A L+ LL + VN+IP NP+ GS ++ A
Sbjct: 259 TGRRVTFEYALIAGVNDRREDARGLSRLLRDM--LAFVNIIPLNPVAGSGFKGVPPAAAR 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
AF L+ + +IR +RG D +AACGQLR
Sbjct: 317 AFVALLQEAGLEAAIRDSRGQDIAAACGQLR 347
>gi|421528926|ref|ZP_15975477.1| radical SAM protein [Pseudomonas putida S11]
gi|402213563|gb|EJT84909.1| radical SAM protein [Pseudomonas putida S11]
Length = 388
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 136/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K ++++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVVRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + +D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAMKIMMEDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|269965168|ref|ZP_06179302.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269830154|gb|EEZ84381.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 375
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|420434694|ref|ZP_14933694.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-27]
gi|420505231|ref|ZP_15003747.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-74]
gi|393052462|gb|EJB53408.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-27]
gi|393116763|gb|EJC17267.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-74]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIVHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
Length = 375
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TN+V MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|168186788|ref|ZP_02621423.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
Eklund]
gi|169295142|gb|EDS77275.1| radical SAM enzyme, Cfr family [Clostridium botulinum C str.
Eklund]
Length = 343
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 137/272 (50%), Gaps = 54/272 (19%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGT K L + ED +IE+V + + + CVS+Q+GC + C FCA+ G RNL
Sbjct: 75 DGTEKFLFEYEDGNIIESVVMKYKHGN-----SICVSTQIGCRMGCKFCASTVDGVVRNL 129
Query: 141 SSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITI 198
+S EI+ QVL ++ R++NVV MG GEP+ N +VL+ + +N D ++IGQR IT+
Sbjct: 130 TSGEIIAQVLKAQKEIDDRISNVVLMGSGEPLDNYDNVLKFLKLINHDDTLKIGQRHITL 189
Query: 199 STVGVPNTIKKLASYKLQSTLAIR------------------------------------ 222
ST GV IK+LA K+Q TLAI
Sbjct: 190 STCGVVPKIKELADEKMQITLAISLHAPNNEIRKSMMPIASKYTLDELLETCRYYYITTN 249
Query: 223 ---------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAF 273
GVND E+A EL + L G H+NLIP N I+ ++Y+R K + F
Sbjct: 250 RRITFEYALVKGVNDSRENAEELIKKLK--GMLCHINLIPVNEIKENNYERSKSKDIEEF 307
Query: 274 AGALESHKITTSIRQTRGLDASAACGQLRNEF 305
L + I T+IR+ G D + ACGQLR +
Sbjct: 308 KETLIKYGIETTIRREMGSDINGACGQLRRNY 339
>gi|425789965|ref|YP_007017885.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Aklavik117]
gi|425628280|gb|AFX91748.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Aklavik117]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|420449491|ref|ZP_14948361.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-44]
gi|393062509|gb|EJB63361.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-44]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILADKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|387782942|ref|YP_005793655.1| hypothetical protein KHP_1277 [Helicobacter pylori 51]
gi|261838701|gb|ACX98467.1| hypothetical protein KHP_1277 [Helicobacter pylori 51]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFQEMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAILESEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
Length = 373
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 140/290 (48%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + D + +ETV IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SADGTIKFSINVGDGQEVETVYIPEGD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EI+GQV + + + +TNVV MGMGEP+LNLK+V+ A + D
Sbjct: 131 NLTVSEIIGQVWRVADFIGFIKKTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAANDELRDVLVPVNKKYPLQEFLASI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND + A ELA+L+ + +NLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT--PCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAACGQLAGDIRDRTKRL 358
>gi|420402880|ref|ZP_14902066.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY6261]
gi|393020046|gb|EJB21185.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY6261]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|424844216|ref|ZP_18268827.1| 23S rRNA m2A2503 methyltransferase [Jonquetella anthropi DSM 22815]
gi|363985654|gb|EHM12484.1| 23S rRNA m2A2503 methyltransferase [Jonquetella anthropi DSM 22815]
Length = 352
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 138/269 (51%), Gaps = 51/269 (18%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K L +L D +E+V + + LTAC+SSQVGCPL+C+FCATG+ GF R
Sbjct: 76 SADGTKKYLWELSDGARVESVLMDHGNH-----LTACLSSQVGCPLKCAFCATGRDGFER 130
Query: 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMI 196
N+++ EIVG LA+E + NVVFMGMGEP+LN +V A RCL K +G R +
Sbjct: 131 NMTAGEIVGHFLAMEADLGKPIGNVVFMGMGEPLLNFVNVERAIRCLLEPKMRGMGVRHV 190
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQ--------------------------- 229
TIST GV + I+KLA L L + ND+
Sbjct: 191 TISTAGVADGIRKLADSGLGVYLCLSLHAPNDELRSRLMPINERYPLPQVLDALKYWQGK 250
Query: 230 ------VEHAV-----ELAELLHEW-----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAF 273
VE+ + +L EL +E +VNLIP+NP+ S + RP + F
Sbjct: 251 TGVRLTVEYVLIKGVTDLPELAYELPTLFSDLQTYVNLIPYNPVIPS-FSRPSASRIEPF 309
Query: 274 AGALESHKITTSIRQTRGLDASAACGQLR 302
A L + +R+ +G D AACGQLR
Sbjct: 310 AKILRELGMEVEVRREKGTDIDAACGQLR 338
>gi|386747183|ref|YP_006220391.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
cetorum MIT 99-5656]
gi|384553425|gb|AFI05181.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
cetorum MIT 99-5656]
Length = 359
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 144/280 (51%), Gaps = 54/280 (19%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+F+++ +L+K++D ++ E G+ +E EK T CVS QVGC + C+FC T
Sbjct: 78 LFKSLIDGHTFEAVLLKMKDKKIDEESGVILEGEK----YTVCVSCQVGCQVGCAFCFTQ 133
Query: 133 KGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
KGGF+RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A + N +
Sbjct: 134 KGGFARNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIKIFNHGL 193
Query: 190 QIGQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA---------------- 224
QI + ITIST GV + I LAS L LAI RS+
Sbjct: 194 QISPKRITISTSGVADKIPVLASKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNE 253
Query: 225 --------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ND ++ A +L +LL+ G VNLI FNP GS +QR
Sbjct: 254 VRQWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHAGSKFQR 311
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
P ++ FA L S + +IR+++ LD AACGQLR +
Sbjct: 312 PSIESARIFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|213963853|ref|ZP_03392101.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
gi|213953533|gb|EEB64867.1| radical SAM enzyme, Cfr family [Capnocytophaga sputigena Capno]
Length = 350
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 161/333 (48%), Gaps = 66/333 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + G T +P++ R L E +++ + + + DGT+K ++
Sbjct: 28 RGNQVYEWLWQKGVH-TFEAMTSLPKATREMLAEH-FSINHIKVDVMQRSNDGTIKNAVR 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI QV
Sbjct: 86 LHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFDQV 140
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST G+
Sbjct: 141 KVIDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGI 200
Query: 204 PNTIKKLASYKLQSTLAI-------------------------RSA-------------- 224
P IKK+A +++ LA+ R A
Sbjct: 201 PKLIKKMADDEVKFKLAVSLHSAIGSVRTGIMPFNEQFPLEELRDALAYWYQKTKNRITY 260
Query: 225 ------GVNDQ---VEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
G+NDQ VE ++ + VNLI +NPI+ D+Q+ KA+ +
Sbjct: 261 EYVVWKGINDQKKDVEALIKFCKFA-----PSKVNLIEYNPIDDGDFQQADPKALELYQT 315
Query: 276 ALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
LE+ IT ++R +RG D AACGQL N+ KS
Sbjct: 316 MLEAAGITVTVRHSRGKDIDAACGQLANKKVKS 348
>gi|429752386|ref|ZP_19285250.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177054|gb|EKY18398.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 346
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 155/324 (47%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + G T +P++ R L E +++ + + + DGT+K ++
Sbjct: 28 RGNQVYEWLWQKGVH-TFDEMTSLPKATREMLAEH-FSINHIKVDVMQRSNDGTIKNAVR 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI QV
Sbjct: 86 LHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFDQV 140
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST G+
Sbjct: 141 KVIDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTSGI 200
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
P IKK+A +++ LA+ V + EL E L W +
Sbjct: 201 PKLIKKMADDEVKFKLAVSLHSAIGSVRTGIMPFNEQFPLEELREALAYWYQKTKNRITY 260
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ D+Q+ KA+ + LE+
Sbjct: 261 EYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGDFQQADPKALELYQTMLEAA 320
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
IT ++R +RG D AACGQL N+
Sbjct: 321 GITVTVRHSRGKDIDAACGQLANK 344
>gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 375
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ E +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKE--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L + T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQL 347
>gi|420427732|ref|ZP_14926774.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-9]
gi|393040302|gb|EJB41321.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-9]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDAETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLSIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|332686368|ref|YP_004456142.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius ATCC 35311]
gi|332370377|dbj|BAK21333.1| ribosomal RNA large subunit methyltransferase N [Melissococcus
plutonius ATCC 35311]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 58/279 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 79 AKDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNMGCTFCASGLLKKNR 133
Query: 139 NLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
NL++ EIV Q++ ++ F RV++VV MG+GEP N + +++ + +N K + I
Sbjct: 134 NLTAGEIVAQIMMVQRYFDQRKLGERVSHVVVMGIGEPFDNYEQLMQFIQIINDEKGLAI 193
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLA---------IRSA------------------ 224
G R +T+ST G+ IKK A LQ LA IRS+
Sbjct: 194 GARHLTVSTCGLVPQIKKFAQTGLQVNLAISLHASNNQIRSSIMRINHTFPIEKLMQTID 253
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND EHA ELA+LL + + +VNLIP+NP+ D Y R
Sbjct: 254 EYIEQTNRRVTFEYIMLQKVNDYPEHAQELADLLKDKKKLAYVNLIPYNPVNEHDQYCRS 313
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
K +VL F L+ + I IR+ G D AACGQLR++
Sbjct: 314 EKASVLKFYDILKKNGINCVIRKEHGTDIDAACGQLRSK 352
>gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
Length = 373
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELA+L+ G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|339485847|ref|YP_004700375.1| radical SAM protein [Pseudomonas putida S16]
gi|338836690|gb|AEJ11495.1| radical SAM protein [Pseudomonas putida S16]
Length = 381
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 136/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K ++++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVVRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + +D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAMKIMMEDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|385249835|ref|YP_005778054.1| hypothetical protein HPF57_1340 [Helicobacter pylori F57]
gi|317182630|dbj|BAJ60414.1| hypothetical protein HPF57_1340 [Helicobacter pylori F57]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRQSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|337286227|ref|YP_004625700.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
gi|335359055|gb|AEH44736.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
Length = 349
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 158/326 (48%), Gaps = 64/326 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLI 88
RGRQ W + G + +P++ R +L + LP I++ ++DGT KL +
Sbjct: 28 RGRQVFKWLAQPGIYSFAQMT-DLPKALREELSKEFCLF--LPEIYKEEVSSDGTRKLAL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
+L+D+ LIE V IP ED T CVSSQVGC + C+FC T K GF RNLS HEI Q
Sbjct: 85 RLKDDELIECVIIPEEDH-----YTLCVSSQVGCAMGCAFCLTAKMGFRRNLSPHEITAQ 139
Query: 149 VLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITIS 199
VL +E+ + + N+VFMGMGEP+ N +++L A + L K +R +T+S
Sbjct: 140 VLRAKEVLIREGLIKEKPLRNIVFMGMGEPLANYENILRALKILLDEKGFNFSRRRVTVS 199
Query: 200 TVGVPNTIKKLAS---------------------------YKLQSTL------------- 219
TVG+ ++KL Y L+ +
Sbjct: 200 TVGLIPQMEKLGKDITAKLAISLHAADEDKRTQLMPINKRYPLKELIPACRRYPLPKGWR 259
Query: 220 ----AIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275
+ GVND A +LA+LL G +NLIPFN ++ ++ + F G
Sbjct: 260 ITFEYLMLKGVNDSSHDAHKLAKLLK--GVPAKINLIPFNEHPALPFKCSDEETIFRFQG 317
Query: 276 ALESHKITTSIRQTRGLDASAACGQL 301
L S+ +IR+++G D SAACGQL
Sbjct: 318 ILLSYGYVATIRKSKGRDISAACGQL 343
>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
halifaxensis HAW-EB4]
gi|205829881|sp|B0TLI1.1|RLMN_SHEHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
Length = 373
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 146/303 (48%), Gaps = 64/303 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K I + D + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SVDGTIKFAINVGDGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + + + +TNVV MGMGEP+LNLK+V+ A + D
Sbjct: 131 NLTVAEIVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y L+ L
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDVLVPVNKKYPLEEFLGGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND + A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + F+ L + +T +R+TRG D AACGQL + + R+ + ES
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL-AKKQMQESQ 367
Query: 323 IAV 325
I+V
Sbjct: 368 ISV 370
>gi|386753330|ref|YP_006226549.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Shi169]
gi|384559588|gb|AFI00056.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Shi169]
Length = 357
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|422909265|ref|ZP_16943914.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-09]
gi|424658618|ref|ZP_18095874.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-16]
gi|341635412|gb|EGS60128.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-09]
gi|408054526|gb|EKG89496.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-16]
Length = 373
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA--------------- 220
G +R +T+ST GV + ++++ + KL+S +
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIQAFLEVV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAEL+ G +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
Length = 389
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 148/306 (48%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L++A R P I + + DGT+K I + + + +ETV IP +D R
Sbjct: 68 INKVLRNKLKQAAEI--RAPEIAQEQRSTDGTIKWAITVGEQQ-VETVYIPEDD-----R 119
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV ++ + +TNVV
Sbjct: 120 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIGSLKSSGRRPITNVV 179
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 180 MMGMGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 239
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + GVND +EHA +
Sbjct: 240 HAPTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQ 299
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAE L +NLIP+NP G+ Y R + FA L + TT +R+TRG D
Sbjct: 300 LAECLKH--TPSKINLIPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDID 357
Query: 296 AACGQL 301
AACGQL
Sbjct: 358 AACGQL 363
>gi|420401148|ref|ZP_14900346.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY3281]
gi|393015833|gb|EJB16997.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY3281]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEKTNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|310659155|ref|YP_003936876.1| putative Fe-S-cluster redox enzyme [[Clostridium] sticklandii]
gi|308825933|emb|CBH21971.1| putative Fe-S-cluster redox enzyme [[Clostridium] sticklandii]
Length = 341
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 156/298 (52%), Gaps = 56/298 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAA-DGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + + L+E + + ++ +++ +T+ DGT K L++L+D +IE V + +
Sbjct: 47 ISKVLKEKLKERLY-ISKVSVYKVLTSELDGTRKYLLQLDDKNIIEAVLM-----RYKHG 100
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
L+ C+SSQVGC + CSFCA+ G RNL++ E++GQ+LA++ K R++NVV MG GEP
Sbjct: 101 LSICISSQVGCLMGCSFCASTIDGLVRNLTAGEMIGQILAVQNDVKERISNVVMMGSGEP 160
Query: 172 MLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLA--------- 220
+ N ++++ ++++ + IG R ITIST GV + +LA LA
Sbjct: 161 LDNFDNLIKFLDIVHQEDSLNIGYRHITISTCGVVPKVNELAKLGYPINLAISLHETTHE 220
Query: 221 -----------------IRSA-------------------GVNDQVEHAVELAELLHEWG 244
I++A GVND E A L++LL G
Sbjct: 221 KRKIIMPVENAYPIDSVIKAAKDYANTTKRRVTFEYALIKGVNDSNEDANRLSKLLK--G 278
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
HVNLIP N +E Y+RP K A+ AF L+S+ I ++R+ G D + ACGQLR
Sbjct: 279 MLCHVNLIPVNTVEERTYKRPDKAAINAFLSVLKSNHIEATVRREMGKDINGACGQLR 336
>gi|108563778|ref|YP_628094.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori HPAG1]
gi|123246875|sp|Q1CRK2.1|RLMN_HELPH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|107837551|gb|ABF85420.1| hypothetical protein HPAG1_1353 [Helicobacter pylori HPAG1]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
R IT+ST GV + I LA L LAI RS+
Sbjct: 198 RRITVSTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|400287779|ref|ZP_10789811.1| hypothetical protein PPAM21_06876 [Psychrobacter sp. PAMC 21119]
Length = 409
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 157/340 (46%), Gaps = 70/340 (20%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + G + + + +S R+ L V I R + DGT K +
Sbjct: 50 PFRSTQVVRWIYQQGVTDFEQMTN-LSKSLRDKLSANACVVPPKVIHRQYSD-DGTRKWV 107
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++ L+ETV IP +D K R T CVSSQVGC L CSFC+TGK GF R+L++ EI+G
Sbjct: 108 FEVTGGSLVETVLIPADDSKINGRKTLCVSSQVGCALDCSFCSTGKQGFERDLTAAEIIG 167
Query: 148 QVL------------AIEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
Q+ ++E + +++ VTNVV MGMGEP+LN K V+ + + D
Sbjct: 168 QLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYKPVVGSMELMLSDHAY 227
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + +LA Y L+ +A
Sbjct: 228 GLSKRRVTLSTSGVVPKMYQLAQDIDVALAISLHAPNDELRNELVPINKKYPLEELMAAA 287
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ GVND EHA +L LL + +NLIPFNP ++
Sbjct: 288 RNYVYDVNPRHKKHVTIEYVMLDGVNDSNEHAHQLVALLGDLPS--KINLIPFNPFPHAN 345
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y + + AF+ L +IRQTRG D AACGQL
Sbjct: 346 YDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAACGQL 385
>gi|420407555|ref|ZP_14906719.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY6311]
gi|393021013|gb|EJB22147.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY6311]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|392398164|ref|YP_006434765.1| 23S rRNA m(2)A-2503 methyltransferase [Flexibacter litoralis DSM
6794]
gi|390529242|gb|AFM04972.1| 23S rRNA m(2)A-2503 methyltransferase [Flexibacter litoralis DSM
6794]
Length = 366
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 160/324 (49%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W A+ + Q R LQE + + L I + DGTVK +
Sbjct: 48 RAKQVWQWLWEKSATSFEEMTN-LSQKLREILQE-NFAINLLTIAEEQKSDDGTVKSSFR 105
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +++E V IPV+D R+TAC+SSQVGC L C FCATG G RN+ + EI QV
Sbjct: 106 LYDGKIVEGVLIPVKD-----RMTACISSQVGCSLSCKFCATGYMGKKRNIEAAEIYDQV 160
Query: 150 LAI----EEIFKHRVTNVVFMGMGEPMLNLKSVLEA-HRCLNKD-VQIGQRMITISTVGV 203
+AI EE F +TN+V+MGMGEP++N K+VL++ R + D + + + IT+ST G+
Sbjct: 161 VAIARQAEENFNQPLTNIVYMGMGEPLMNYKNVLQSIDRLTSPDGLNMSPKRITVSTAGI 220
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAVE----------LAELLHEWGRGHH----- 248
IK LA ++ LA+ +D+ + + LAE L +
Sbjct: 221 AKFIKMLADDNVKFNLALSLHAAHDEKRNEIMDINESNSLDVLAEALKYFYEKTENRITF 280
Query: 249 ----------------------------VNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VN++ +NPIE ++Y++P + + FA L
Sbjct: 281 EYILFDNFNDSLKDADELYQFTKHVPCRVNILEYNPIEEAEYKKPTAERMDKFANYLIRR 340
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
+ T++R++RG D AACGQL N+
Sbjct: 341 GVRTTVRRSRGKDIDAACGQLANK 364
>gi|385226046|ref|YP_005785971.1| cfr family radical SAM enzyme [Helicobacter pylori 83]
gi|332674192|gb|AEE71009.1| cfr family radical SAM enzyme [Helicobacter pylori 83]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|429747749|ref|ZP_19280997.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162428|gb|EKY04749.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 350
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 154/326 (47%), Gaps = 56/326 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RG Q W + G T +P++ R L E +++ + + + DGT+K
Sbjct: 26 PFRGNQVYEWLWQKGVH-TFEEMTSLPKATREMLSEH-FSINHIKVDVMQRSNDGTIKNA 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI
Sbjct: 84 VRLHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFD 138
Query: 148 QVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTV 201
QV I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST
Sbjct: 139 QVKVIDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTS 198
Query: 202 GVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG----- 246
G+P IKK+A +++ LA+ V + EL E L W +
Sbjct: 199 GIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKTKNRI 258
Query: 247 ----------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VNLI +NPI+ +Q+ KA+ + LE
Sbjct: 259 TYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLE 318
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
IT +IR +RG D AACGQL N+
Sbjct: 319 EAGITVTIRHSRGKDIDAACGQLANK 344
>gi|431800905|ref|YP_007227808.1| radical SAM protein [Pseudomonas putida HB3267]
gi|430791670|gb|AGA71865.1| radical SAM protein [Pseudomonas putida HB3267]
Length = 378
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 136/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K ++++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 75 SADGTRKWVVRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 129
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + +D+
Sbjct: 130 NLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAMKIMMEDLGY 189
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 190 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKMLLESC 249
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 250 MGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 307
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 308 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 345
>gi|420450967|ref|ZP_14949821.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-45]
gi|393064899|gb|EJB65729.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-45]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|379704816|ref|YP_005203275.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Streptococcus infantarius
subsp. infantarius CJ18]
gi|374681515|gb|AEZ61804.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 366
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 143/282 (50%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D LIETV + + L+ CV+SQVGC + CSFCA+G R
Sbjct: 80 ASDGTVKYLFELPDGMLIETVLM-----RQHYGLSVCVTSQVGCNIGCSFCASGLIKKQR 134
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+L+S EI Q++ +++ F RV++VV MG+GEP N +VL R +N D + I
Sbjct: 135 DLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDNGLAI 194
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
G R ITIST G+ + I++ A LQ LA+ RS
Sbjct: 195 GARHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFTAIE 254
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND E+A ELA+L + + ++NLIP+NP+ D Y+R
Sbjct: 255 YYIETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYRRS 314
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K+ V AF L+ + + +RQ G D AACGQLR+ K
Sbjct: 315 SKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMK 356
>gi|421710887|ref|ZP_16150236.1| 23S rRNA methyltransferase [Helicobacter pylori R018c]
gi|421722463|ref|ZP_16161722.1| 23S rRNA methyltransferase [Helicobacter pylori R056a]
gi|407208763|gb|EKE78671.1| 23S rRNA methyltransferase [Helicobacter pylori R018c]
gi|407226247|gb|EKE96013.1| 23S rRNA methyltransferase [Helicobacter pylori R056a]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|420397858|ref|ZP_14897071.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY1962]
gi|393014532|gb|EJB15703.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY1962]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
Length = 346
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 157/323 (48%), Gaps = 58/323 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA-ADGTVKL 86
P R RQ W + G + + +P++ L+E + + ++ I++ + D TVK
Sbjct: 25 PYRARQIFRW-IYKGVTDFEKMT-DLPRTLVEKLKELSY-IDKIGIYKKFQSRKDATVKY 81
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L L DN +IE+V + E G ++ CVSSQVGC + C+FCA+ G R+L+S E+V
Sbjct: 82 LFLLSDNNIIESVKM--EHSYG---VSVCVSSQVGCAMGCAFCASTIDGLKRSLNSGEMV 136
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVP 204
Q+L I+E K R+++VV MG GEP+LN +++ +N + I R IT+ST G+
Sbjct: 137 DQILVIQEDIKKRISHVVIMGSGEPLLNYDELIKFLNIINSPLAFNISYRRITVSTCGIV 196
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
I++LA L TL++
Sbjct: 197 PEIRRLADEGLPITLSVSLHAPEDDLRDKLVPVNRRYPILELLDACKYYIIKTNRRITFE 256
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
+ VND E AV+LA LL G HVNLIP NP+ D+ R + + F L
Sbjct: 257 YALISDVNDSKECAVKLARLLK--GLLCHVNLIPLNPVRERDFMRSKPENIRLFQEILRH 314
Query: 280 HKITTSIRQTRGLDASAACGQLR 302
+ I+ ++RQ G D AACGQLR
Sbjct: 315 YGISVTVRQEMGADIEAACGQLR 337
>gi|420416033|ref|ZP_14915146.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4053]
gi|393031938|gb|EJB33009.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4053]
Length = 357
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|373106184|ref|ZP_09520487.1| 23S rRNA methyltransferase [Stomatobaculum longum]
gi|371652559|gb|EHO17967.1| 23S rRNA methyltransferase [Stomatobaculum longum]
Length = 354
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 143/305 (46%), Gaps = 62/305 (20%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+S R L+E G + V+ +DGT K L L D +IE+V MR
Sbjct: 50 LPKSLRETLKEHARLPGLVQEVVQVSKSDGTEKYLFSLPDGNMIESV---------LMRY 100
Query: 113 ----TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM 168
+ C+SSQVGC + C FCA+ G +RNL++ E++ QV AIE RV+NVV MG
Sbjct: 101 NYGNSVCISSQVGCRMGCRFCASTVDGLARNLTAGEMLAQVYAIERKIGERVSNVVVMGS 160
Query: 169 GEPMLNLKSVLEAHRCL-NKD-VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---- 222
GEPM N +V+ R L +KD + I QR IT+ST G+ I++ A KLQ TLA+
Sbjct: 161 GEPMDNYDNVVRFIRLLSDKDGLNISQRNITVSTCGLVPEIRRFADEKLQVTLALSLHAA 220
Query: 223 -----------------------------------------SAGVNDQVEHAVELAELLH 241
AGVND A +L LL
Sbjct: 221 DDATRQRLMPIANRYALCDVLDACAYYFEKTGRRVSFEYSLVAGVNDTPAEAAKLIALLR 280
Query: 242 EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R HVNLIP NP+ + P AV F LE + I +IR+ G D ACGQL
Sbjct: 281 H--RKGHVNLIPVNPVVERSLKEPSLAAVHYFRDTLEKNGINVTIRKEMGRDIDGACGQL 338
Query: 302 RNEFQ 306
R ++
Sbjct: 339 RRRYR 343
>gi|150026118|ref|YP_001296944.1| hypothetical protein FP2080 [Flavobacterium psychrophilum JIP02/86]
gi|205829761|sp|A6H1B8.1|RLMN_FLAPJ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|149772659|emb|CAL44142.1| Protein of unknown function YloN [Flavobacterium psychrophilum
JIP02/86]
Length = 347
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 155/324 (47%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W GA V + R L E + + + + ++DGTVK ++
Sbjct: 29 RGNQVYEWLWSKGAHSFEDMTN-VSKGTRQMLVE-NFVINHIKVDTMQRSSDGTVKNAVR 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++E+V IP E R TACVSSQVGC L C+FCAT + RNL EI QV
Sbjct: 87 LHDGLIVESVLIPTE-----TRTTACVSSQVGCSLDCNFCATARLKRMRNLEPGEIYDQV 141
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV 203
LAI+ F ++N+VFMGMGEP++N +V++A + +G + IT+ST GV
Sbjct: 142 LAIDRESKLYFNRPLSNIVFMGMGEPLMNYNNVIKAIDMITSSEGLGMSPKRITVSTSGV 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH------ 247
IKK+A +++ LA+ +++ + + EL E L W
Sbjct: 202 SKMIKKMADDEVKFKLAVSLHSAVEEIRNKIMPFTKSFPLPELREALQYWYHKTKSKITY 261
Query: 248 ---------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ ++Q+ +++ A+ ALE++
Sbjct: 262 EYVVWKGINDNKESVDALVKFCKHVPCKVNLIEYNPIDDGEFQQASPESINAYIKALEAN 321
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
I +R +RG D AACGQL N+
Sbjct: 322 GIIAKVRHSRGKDIDAACGQLANK 345
>gi|424864659|ref|ZP_18288562.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
gi|400759405|gb|EJP73587.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
Length = 360
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 152/330 (46%), Gaps = 61/330 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
R Q W H R + +P R L+E ++ I + + DGT K I
Sbjct: 28 RANQFLKWVHQRGCLNFDEMTDFNIP--LREQLKEIA-SIETPKILESSLSKDGTEKFAI 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
KL ++E V IP E R T C+SSQ GC L+C+FCATG GF NL+S EI+GQ
Sbjct: 85 KLNSGSIVEMVVIPEEK-----RNTLCISSQAGCALQCTFCATGAQGFDSNLTSSEIIGQ 139
Query: 149 VLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGV- 203
+ K ++TNVVFMGMGEP+LN ++V+E+ + + G ++ ITIST G+
Sbjct: 140 LWLANNFSTNKRKITNVVFMGMGEPLLNYENVVESAQIMKDQNAYGLSRKRITISTSGIV 199
Query: 204 ------PNTIK------------------------------------KLASYKLQSTLAI 221
PN I L S+ + + I
Sbjct: 200 PQILNLPNDIDVSLAISLHAPNDDLRNEIVPINNKYPLKELISSCKTYLKSFTNKKNITI 259
Query: 222 RS---AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VND +EHA EL+++L+ +NLIPFNP +G DY+R + + AF L
Sbjct: 260 EYILIKEVNDSLEHAKELSKILNHL--NCKINLIPFNPFDGCDYERSSDQDINAFKSFLM 317
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQKS 308
++R+TRG ACGQL K+
Sbjct: 318 KKGFIATVRRTRGDLIDGACGQLVGNLNKA 347
>gi|392968699|ref|ZP_10334115.1| radical SAM enzyme, Cfr family [Fibrisoma limi BUZ 3]
gi|387843061|emb|CCH56169.1| radical SAM enzyme, Cfr family [Fibrisoma limi BUZ 3]
Length = 348
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 139/272 (51%), Gaps = 49/272 (18%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +L D L+E V IP P R+TACVSSQVGC L C FCATG R
Sbjct: 73 SSDGTIKSSFRLFDGNLVEGVLIPALRNDDPDRMTACVSSQVGCSLTCKFCATGYMDRKR 132
Query: 139 NLSSHEIVGQVLAIE----EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ- 193
NL + EI QV+AI+ E + ++N+V+MGMGEP+LN K+V+E+ + + +G
Sbjct: 133 NLDAAEIYDQVVAIDRQAKENYGTSLSNIVYMGMGEPLLNYKNVMESVKLITSPEGLGMS 192
Query: 194 -RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHE 242
+ IT+ST G+ IK+L +++ LA+ NDQ + L + L+
Sbjct: 193 PKRITVSTAGIAKMIKQLGDDQVKFNLALSLHAANDQKRDQIMPINESNTLEALGDALNY 252
Query: 243 WGRGH---------------------------------HVNLIPFNPIEGSDYQRPYKKA 269
+ + VN+I +NPI ++++ +
Sbjct: 253 FYKKTGTRVTFEYILFYNFNDTLQDAKELWAFTKRVPAKVNIIEYNPIAEANFKNTDPQT 312
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ FAG LES +T ++R++RG D AACGQL
Sbjct: 313 LDKFAGFLESKGVTVNVRRSRGKDIDAACGQL 344
>gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi
SZ]
gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ]
Length = 351
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 144/288 (50%), Gaps = 55/288 (19%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+ RL +DGT K L LED +E+V IP ED R T C+SSQ GC ++C+
Sbjct: 66 ISRLEPETVEVGSDGTRKYLFMLEDGNAVESVIIPDED-----RNTLCISSQAGCAMQCA 120
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
FC TG +RNL++ EIV Q+LA++ + R N+V MGMGEP+ NL +V+ A + + +
Sbjct: 121 FCLTGTFSLTRNLTTAEIVNQILAVQRDVEVR--NIVMMGMGEPLHNLDNVIPALQIMAE 178
Query: 188 D--VQIGQRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D +Q+ R +T+ST G+ +++L +Y + +
Sbjct: 179 DNGLQLSSRRVTVSTCGLVPELERLGREVTVNLAVSLNATTDELRDRIMPVNKAYPIATL 238
Query: 219 LA-----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
LA + G+ND E A L LL + +NLIPFNP EG+D
Sbjct: 239 LAALKNYPLPGRRKITIEYVLLGGLNDTPEDAKRLVRLLSDI--PCKINLIPFNPHEGAD 296
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
++ P + A+ AF L T R +RG D SAACGQL+ + + P
Sbjct: 297 FRPPSRAALDAFHKYLLDRHFTVITRDSRGSDISAACGQLKGKLDRKP 344
>gi|260776635|ref|ZP_05885530.1| ribosomal RNA large subunit methyltransferase N [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607858|gb|EEX34123.1| ribosomal RNA large subunit methyltransferase N [Vibrio
coralliilyticus ATCC BAA-450]
Length = 374
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|420484700|ref|ZP_14983322.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-3]
gi|420515081|ref|ZP_15013548.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-3b]
gi|393098710|gb|EJB99292.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-3]
gi|393155524|gb|EJC55796.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-3b]
Length = 357
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K R T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDERTNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|210622414|ref|ZP_03293146.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
gi|210154230|gb|EEA85236.1| hypothetical protein CLOHIR_01094 [Clostridium hiranonis DSM 13275]
Length = 342
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 152/321 (47%), Gaps = 58/321 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLI 88
RG Q W + GA KT + +P+S R L+E + +G + I + + DG T K L
Sbjct: 28 RGTQVYSW-IYKGA-KTFDDMKNIPKSLREKLEEVSY-IGNIDIELKLESKDGKTKKYLF 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
L D +IETV + + R+T CVS+QVGC + C FCA+ G RNL EI+ Q
Sbjct: 85 LLNDGNIIETVMMDYDS-----RVTVCVSNQVGCRMGCRFCASTMDGLVRNLEPWEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNT 206
++ I+E RV+N+V MG GEP+ N + + + +N + + IG R IT+ST G+
Sbjct: 140 IMKIQEDTGKRVSNLVLMGSGEPLDNYDNTKQFLKIVNDENGLNIGYRHITLSTCGIVPK 199
Query: 207 IKKLASYKLQSTLAIR-------------------------------------------- 222
I +LA ++ LAI
Sbjct: 200 IYELADLEIPINLAISLHSPYDEKRKEIMPVANKYSIKEILDACRYYIKKTNRRVTFEYS 259
Query: 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
GVND + A LA LL G HVNLIP N ++ D+++P K + F LE
Sbjct: 260 LIKGVNDGKKEAEALASLLK--GMLCHVNLIPINEVDERDFKKPDKAFIYKFRDYLEERN 317
Query: 282 ITTSIRQTRGLDASAACGQLR 302
I ++R + G D S ACGQLR
Sbjct: 318 IPATVRISMGSDISGACGQLR 338
>gi|384894926|ref|YP_005768975.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Sat464]
gi|308064180|gb|ADO06067.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Sat464]
Length = 357
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|315123120|ref|YP_004065126.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
gi|392555092|ref|ZP_10302229.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
undina NCIMB 2128]
gi|315016880|gb|ADT70217.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
Length = 376
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 146/302 (48%), Gaps = 62/302 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +E V IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 77 ASDGTIKYALVLEGGQEVEAVWIPEKD-----RATLCVSSQVGCALECTFCSTAQQGFNR 131
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + + K VTNVV MGMGEP+LN+K+V+ A + D
Sbjct: 132 NLKVSEIIGQVWRVAKDIGLDGNSEKRPVTNVVMMGMGEPLLNVKNVVPAMELMMDDWGF 191
Query: 192 G--QRMITISTVGV----------------------PNTIKKL-----ASYKLQSTLA-- 220
G +R +T+ST GV N ++ + Y ++ LA
Sbjct: 192 GLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPINKKYPIEEFLAAC 251
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ GVND + A EL + L G VNLIPFNP G++Y
Sbjct: 252 RRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELVKTLK--GTPSKVNLIPFNPFPGNEYT 309
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESDI 323
R + F+ L++ IT +R+TRG D AACGQL + R+ ++ I
Sbjct: 310 RSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACGQLAGDVVDRTKRMAKKKMRDDNAI 369
Query: 324 AV 325
AV
Sbjct: 370 AV 371
>gi|385229089|ref|YP_005789022.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Puno120]
gi|344335527|gb|AEN15971.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Puno120]
Length = 357
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
gi|205829658|sp|A1TM24.1|RLMN_ACIAC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
Length = 373
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 158/336 (47%), Gaps = 66/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GAS R + +S R L V LP+ +ADGTVK L
Sbjct: 26 RAVQLFRWIHQRGASDFARMS-DLAKSLREKLSGCAH-VAALPVISEHVSADGTVKWLFD 83
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+ D +E+V IP ED++G T C+SSQ GC + C FC+TG GFSRNL+S EIV Q+
Sbjct: 84 VGDGNAVESVFIP-EDDRG----TLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQL 138
Query: 150 LAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIST 200
E + R ++NVV MGMGEP+ N +++ A R + D G +R +T+ST
Sbjct: 139 WFAEHALRARLGTQERVISNVVMMGMGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVST 198
Query: 201 VGVPNTIKKLA---------------------------SYKLQSTL---------AIRS- 223
GV + +L+ Y L+ L A R
Sbjct: 199 SGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDF 258
Query: 224 --------AGVNDQVEHAVELAELLHEWGRGHHV----NLIPFNPIEGSDYQRPYKKAVL 271
GVNDQ EHA +L +L+ G G V NLIPFNP S R + V
Sbjct: 259 ITFEYCMLDGVNDQPEHARQLIDLVRPRG-GEGVRCKFNLIPFNPFPASGLHRSNPQQVA 317
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
AFA L I T++R+TRG D AACGQL + +
Sbjct: 318 AFAKMLSDAGIVTTVRKTRGDDIDAACGQLAGDVKD 353
>gi|385230703|ref|YP_005790619.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Puno135]
gi|344337141|gb|AEN19102.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Puno135]
Length = 357
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNHLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|295106390|emb|CBL03933.1| 23S rRNA m(2)A-2503 methyltransferase [Gordonibacter pamelaeae
7-10-1-b]
Length = 349
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 141/298 (47%), Gaps = 54/298 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+PQ+ R L A + + + + T+ DGT K +I D +ETV IP D RL
Sbjct: 54 LPQTLRVQLS-ADYPLFTPAVIDSQTSQDGTAKYVISYHDGARVETVAIPSSDG----RL 108
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T C S+Q GC + C+FCATGK GF+RNLS+ EIV Q+L + RV+NVV MG GEP
Sbjct: 109 TVCCSTQAGCAMGCTFCATGKEGFTRNLSAGEIVDQILIAQTRMGERVSNVVVMGQGEPF 168
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAI--------- 221
LN + L A LN + + IG R IT+ST G+ + I +L + Q TLA+
Sbjct: 169 LNYEQTLNALHILNDEKLLNIGARHITLSTCGILSGIDRLGTEPEQFTLAVSLHAAIQRT 228
Query: 222 ----------------------------RSAG--------VNDQVEHAVELAELLHEWGR 245
R A VND E L E G
Sbjct: 229 RDKIMPGVANYGLGKLKTVLLKYIERTNRRATLEYAMMNRVNDNEEDLKALIEFC--TGL 286
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
HVNLIP N IE S++ + + L I T+IR +RG D + ACGQL+N
Sbjct: 287 LCHVNLIPLNEIEESEFSPSKAPTMNHWYLTLNRSGIETTIRHSRGSDIAGACGQLKN 344
>gi|333985584|ref|YP_004514794.1| ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
gi|333809625|gb|AEG02295.1| Ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
Length = 371
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 156/334 (46%), Gaps = 60/334 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R Q W + GA + +S R+ L+E R P I A+DGT K
Sbjct: 34 PFRATQLLKWIYQEGAVDFDDMTN-LSKSLRSYLKENCCI--RTPEIVAEQLASDGTCKW 90
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
++ +ETV IP E R T C+SSQVGC L CSFC+T + GF+RNLS+ E++
Sbjct: 91 AMQTHCGNKVETVYIPEE-----RRATLCISSQVGCALACSFCSTAQQGFNRNLSTAEVI 145
Query: 147 GQVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVG 202
GQ+ ++ +HR+TNVV MGMGEP+LN +V+ A + D G +R +TIST G
Sbjct: 146 GQLYLAQQRLGSEHRITNVVMMGMGEPLLNFDNVVAAMNLMMDDFAFGLSKRRVTISTSG 205
Query: 203 VPNTIKKL---------------------------ASYKLQSTL-AIRS----------- 223
V + +L Y L + A R+
Sbjct: 206 VVPAMHRLHDVCDVSMAVSLHAPNDELRNQLVPINIKYPLTELMDACRAYAKNGPRKHIT 265
Query: 224 ------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
G+ND +E A L +LL VNLIPFNP S Y+ A+L F L
Sbjct: 266 FEYVMLDGINDSMEDARTLVKLLKNV--PSKVNLIPFNPFPQSQYRCSEMAAILKFRDIL 323
Query: 278 ESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
+ I T+IR+TRG D AACGQL + Q R
Sbjct: 324 HNAGIVTTIRKTRGDDIDAACGQLVGQVQDKSRR 357
>gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
Length = 366
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 142/282 (50%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D LIETV + + L+ CV+SQVGC + CSFCA+G R
Sbjct: 80 ASDGTVKYLFELPDGMLIETVLM-----RQHYGLSVCVTSQVGCNMGCSFCASGLIKKQR 134
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+L+S EI Q++ +++ F RV++VV MG+GEP N +VL R +N D + I
Sbjct: 135 DLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYDNVLRFVRTINNDNGLAI 194
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
G R ITIST G+ + I++ A LQ LA+ RS
Sbjct: 195 GARHITISTSGLAHKIREFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFAAIE 254
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND E+A ELA+L + + ++NLIP+NP+ D Y R
Sbjct: 255 YYVETTNRRVTFEYIMLNDVNDSPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYSRS 314
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K+ V AF L+ + + +RQ G D AACGQLR+ K
Sbjct: 315 SKEHVAAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMK 356
>gi|244538894|dbj|BAH82937.1| predicted enzyme [Candidatus Ishikawaella capsulata Mpkobe]
Length = 387
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 141/280 (50%), Gaps = 65/280 (23%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K ++++D +LIETV IP + R T C+SSQ+GC + C FCATGK GF+R
Sbjct: 106 SADGTIKWSMRIDD-QLIETVYIPENN-----RSTLCISSQIGCTVGCKFCATGKQGFNR 159
Query: 139 NLSSHEIVGQVLAIEEIF--------KHRVTNVVFMGMGEPMLNLKSVLEA-HRCLNK-D 188
NL EI+GQ+ +I K TN+V MGMGEP+LN+K+V+ + H L+K
Sbjct: 160 NLEVAEIIGQIWQASKILRETKLSSRKRLFTNIVLMGMGEPLLNVKNVVSSIHIMLDKFG 219
Query: 189 VQIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
+ +R +TIST G+ I KLAS Y + LA
Sbjct: 220 FGLSKRRVTISTAGIVPAIYKLASMIDVGLAISLHAPNDLIRDKIMPINKKYNIAMLLAA 279
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ +ND VEHA +LA LL +NLIP+N +GS
Sbjct: 280 VKHYIENGVANRGKITIEYVMLNHINDSVEHAHQLARLLKNIPS--KINLIPWNYFKGSS 337
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y R + FA L + TT IR+TRG D AACGQL
Sbjct: 338 YLRSSDSQINIFAKILIEYGFTTIIRKTRGDDIDAACGQL 377
>gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-4]
gi|122943998|sp|Q0HKW2.1|RLMN_SHESM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4]
Length = 373
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 140/290 (48%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SADGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFAKDTGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND E A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|332664665|ref|YP_004447453.1| ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
hydrossis DSM 1100]
gi|332333479|gb|AEE50580.1| Ribosomal RNA large subunit methyltransferase N [Haliscomenobacter
hydrossis DSM 1100]
Length = 343
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 139/275 (50%), Gaps = 52/275 (18%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +L D +IE+V IPV D+K R T CVS QVGC L C FCATG+ R
Sbjct: 71 SADGTIKSRFRLHDGHMIESVLIPVPDDK---RFTVCVSCQVGCSLTCKFCATGRMNRVR 127
Query: 139 NLSSHEIVGQVLAIE----EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
NL + EI QV+ + E F H ++N+V+MGMGEP+L +V+E+ L + +
Sbjct: 128 NLDAAEIYDQVVMVNQQCLETFGHPLSNIVYMGMGEPLLAYNNVMESIERLTAPDGLHMS 187
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLAIRSAG-----------VNDQVEHAVELAELLH 241
R ITIST G+ IKKLA ++ LA+ +N+Q AV + L +
Sbjct: 188 PRRITISTAGIAKMIKKLADDGCKTNLALSLHAADDLKRDELMPINEQNNLAVLMDALEY 247
Query: 242 EWGRGHH--------------------------------VNLIPFNPIEGSDYQRPYKKA 269
+ + H+ VN+I +NPI Y + +
Sbjct: 248 FYRKTHNRISYEYITFQNVNDGLDDAANLAKLCRRFPVRVNIIEYNPIGDVPYLKSEEDR 307
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ AFA L +IT ++R++RG D AACGQL N+
Sbjct: 308 IDAFARYLREREITVTVRRSRGKDIDAACGQLANK 342
>gi|420413153|ref|ZP_14912277.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4099]
gi|393029140|gb|EJB30221.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4099]
Length = 357
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKINEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDNLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis
DSM 9187]
gi|259491997|sp|C4LC34.1|RLMN_TOLAT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187]
Length = 373
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 137/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP D R T CVSSQVGC L C FC+TG+ GF+R
Sbjct: 77 SSDGTIKWAMRVGDQE-VETVYIPEAD-----RATLCVSSQVGCALECKFCSTGQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL+ EI+GQV ++ K +TNVV MGMGEP+LNL +++ A + +D
Sbjct: 131 NLTVSEIIGQVWRAAQVVGFPKDTGKRVITNVVMMGMGEPLLNLSNLVPALSLMMEDFGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +Q L
Sbjct: 191 GLSKRRVTVSTSGVVPALDKLGDMIDVALAISLHAPNDKLRSEIMPINDKYNIQEFLGSV 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND +EHA ELAELL + +NLIPFNP + Y
Sbjct: 251 QRYLSKSNANHGRVTVEYVLLDHVNDDMEHARELAELLKD--TPSKINLIPFNPFPSNPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+P V F+ L + T +R+TRG D AACGQL
Sbjct: 309 GKPSNSRVDRFSKVLMEYGYTVIVRKTRGDDIDAACGQL 347
>gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae
B728a]
gi|75503082|sp|Q4ZX26.1|RLMN_PSEU2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|63255200|gb|AAY36296.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas syringae pv.
syringae B728a]
Length = 382
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 151/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
E+D A
Sbjct: 371 EADAA 375
>gi|420419380|ref|ZP_14918470.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4076]
gi|393031286|gb|EJB32358.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4076]
Length = 357
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKINEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|406038656|ref|ZP_11046011.1| hypothetical protein AursD1_02268 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 408
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 138/285 (48%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G R T C+SSQVGC L CSFC+TGK GF
Sbjct: 98 SKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGS-RKTLCISSQVGCALDCSFCSTGKQGF 156
Query: 137 SRNLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ + + + VTNVV MGMGEP+LN +VL + + +
Sbjct: 157 QRDLNPDEIIGQLWVANQSYMEDVPVAERERSVTNVVMMGMGEPLLNYDAVLSSMQLMLD 216
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L+
Sbjct: 217 DFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELVPINKKYPLEQL 276
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVND EHA ++ +LL +NLIPFNP
Sbjct: 277 IAACQRYLAKGGNESTRKHVTIEYVMLDGVNDHPEHAQQMIKLLKNL--PSKINLIPFNP 334
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + ++AF L +IRQTRG D AACGQL
Sbjct: 335 FPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQL 379
>gi|373486544|ref|ZP_09577217.1| 23S rRNA m(2)A-2503 methyltransferase [Holophaga foetida DSM 6591]
gi|372011405|gb|EHP12000.1| 23S rRNA m(2)A-2503 methyltransferase [Holophaga foetida DSM 6591]
Length = 371
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 148/284 (52%), Gaps = 52/284 (18%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DG+ KL+++L D IE V +P E + P R+T CVSSQVGC + C+FCATG G RNL
Sbjct: 89 DGSTKLMLRLGDGECIEAVHMPRE-VRNP-RVTLCVSSQVGCAMGCAFCATGTLGIRRNL 146
Query: 141 SSHEIVGQVL-AIEEIFKHR--VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRM 195
S+ EIVGQVL A+ E+ R +VFMGMGEP+ NL+ V A + LN + + I R
Sbjct: 147 SAGEIVGQVLAALRELGPERPHAITLVFMGMGEPLHNLEQVHRAIQILNHTRGLNISTRR 206
Query: 196 ITISTVGVPNTIKKLASYKLQSTLAI---------RS----------------------- 223
IT+ST G+ I++LA + + LA+ RS
Sbjct: 207 ITVSTSGLVPGIERLAHMEPRPWLAVSLNATTDEARSALMPVNRAWGLARLREALDAWSL 266
Query: 224 -------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
AG ND +E A LAE + E RGH+VNLI N E + ++ P + V
Sbjct: 267 GDRERLTIEYVLVAGQNDTMEDAERLAEWMGELRRGHNVNLIRLNEHEAASFREPDEAQV 326
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDS 314
AF L++ ++R++RG D ACGQL + + RI++
Sbjct: 327 NAFVARLKALNCFVTVRKSRGRDIQGACGQLVKKSKGPSKRIEN 370
>gi|158320465|ref|YP_001512972.1| ribosomal RNA large subunit methyltransferase N [Alkaliphilus
oremlandii OhILAs]
gi|205829712|sp|A8MH89.1|RLMN_ALKOO RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|158140664|gb|ABW18976.1| radical SAM enzyme, Cfr family [Alkaliphilus oremlandii OhILAs]
Length = 343
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 156/320 (48%), Gaps = 56/320 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W V G KT + ++ R+ L E + + +++ DGT+K L
Sbjct: 27 RGKQIFQW-VNKGV-KTFDEMTNLSKNLRDQLAERTYITNIKIEKKLISSIDGTIKYLFL 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
LED +IE G+ ++ G LTAC+S+QVGC + C+FCA+ G RNL + E++ Q+
Sbjct: 85 LEDCNIIE--GVVMKYHHG---LTACISTQVGCAMGCTFCASTLDGLVRNLRAGEMIDQI 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTI 207
L ++E R++N+V MG GEP+ N + + +N + + IG R IT+ST G+ I
Sbjct: 140 LTMQEDTGERISNIVLMGSGEPLHNYDETINFLKIINDENGLNIGNRHITLSTSGLVPQI 199
Query: 208 KKLASYKLQSTLAIR--------------------------------------------- 222
K LA K+ LAI
Sbjct: 200 KTLADLKIPINLAISLHAPNDELRQQTMPVAKKYAIDELIDSCRYYIEKTGRRITFEYAL 259
Query: 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282
GVND+ + A EL +LL G HVNLIP N ++ Y++P +++ F L+ I
Sbjct: 260 IKGVNDRDKDARELGDLLK--GMLCHVNLIPVNNVDERGYKKPSIESIHQFQNTLKKAGI 317
Query: 283 TTSIRQTRGLDASAACGQLR 302
T++R+ G D +AACGQLR
Sbjct: 318 ETTVRREMGADINAACGQLR 337
>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
Length = 404
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 161/347 (46%), Gaps = 76/347 (21%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GAS + + +S R L+ A G LP+ +ADGT+K L
Sbjct: 27 RATQLFRWIHQRGASDFDQMS-DLAKSLRAKLKTAAHIQG-LPVITQQESADGTIKWLFD 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+ D +E V IP ED++G T CVSSQ GC + C FC+TG GFSRNLS+ EIV Q+
Sbjct: 85 VGDGNAVEAVYIP-EDDRG----TLCVSSQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQL 139
Query: 150 LAIEEIFK------------HRV-TNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QR 194
E + HRV TNVV MGMGEP+ N +++ A R + D G +R
Sbjct: 140 WHAEHFLRARRQHPLQPGEDHRVITNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRR 199
Query: 195 MITISTVGVPNTIKKLAS---------------------------YKLQSTL-------- 219
+T+ST GV +++L+ Y + L
Sbjct: 200 RLTVSTSGVVPMMERLSEDCPVALAVSLHAPNDGLRDGLVPLNRKYPIHELLDTCLSYLA 259
Query: 220 -AIRS---------AGVNDQVEHAVELAELLHEW---------GRGHHVNLIPFNPIEGS 260
A R GVNDQ EHA EL L+ + G G +NLIPFNP S
Sbjct: 260 HAPRDFITFEYCMLDGVNDQPEHARELLALMQVFRQRAADLGHGVGCKLNLIPFNPFPES 319
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
+R + V AFA L I T++R+TRG D AACGQL + Q
Sbjct: 320 GLKRSPGERVQAFAKILLEAGIVTTVRKTRGDDIDAACGQLAGDVQD 366
>gi|374335136|ref|YP_005091823.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
gi|372984823|gb|AEY01073.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
Length = 372
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 140/279 (50%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 76 SADGTIKWAMQVGDQE-VETVYIPDGD-----RATLCVSSQVGCALDCKFCSTAQQGFNR 129
Query: 139 NLSSHEIVGQVLA-------IEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + + + +TNVV MGMGEP+LNL +V+ A R + +D
Sbjct: 130 NLKVSEIIGQVWRAASRVGFVRDSGRKPITNVVMMGMGEPLLNLNNVVPAMRLMLEDYGF 189
Query: 192 G--QRMITISTVGVPNTIKKLASY----------------------------------KL 215
G +R +T+ST GV + KLA +
Sbjct: 190 GLSKRRVTLSTSGVVPALDKLADMIDVALAVSLHAPNDQLRSEIMPINDKYNIAELIASI 249
Query: 216 QSTLAIRSAG-------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ LA+ +A VND ++HA ELAELL + +NLIPFNP G+ Y
Sbjct: 250 RRYLAVSNANHGKVTIEYVLLDHVNDDMQHAHELAELLKDL--PCKINLIPFNPFPGNPY 307
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+P + F L + T +IR+TRG D AACGQL
Sbjct: 308 GKPSNSRIDRFNKVLMQYGNTVTIRKTRGDDIDAACGQL 346
>gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|422660785|ref|ZP_16723190.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|81732046|sp|Q886Z3.1|RLMN_PSESM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 382
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 140/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKYPLKVLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|375336921|ref|ZP_09778265.1| ribosomal RNA large subunit methyltransferase N
[Succinivibrionaceae bacterium WG-1]
Length = 369
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 141/291 (48%), Gaps = 63/291 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
+ADGT+K + D +LIETV IP D R T CVS+QVGC + C+FCATG G++
Sbjct: 76 NSADGTIKWALDAGDGQLIETVYIPDGD-----RATLCVSTQVGCAVNCAFCATGAQGYN 130
Query: 138 RNLSSHEIVGQV------LAIEEIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL + EI+GQV + K R + NVV MGMGEP+ NL +V+ A + + D+
Sbjct: 131 RNLKTSEIIGQVWRATSCIGFTPNPKLRAIDNVVLMGMGEPLFNLDNVVPAMKIMLDDLG 190
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +TIST GV I KL Y ++S L
Sbjct: 191 FGLSKRRVTISTAGVVPNIDKLGDMIDVALAISLHAPNDELRTKLVPLNERYNIKSILDA 250
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ AGVND + A ELA+ L +NLIPFNP + S
Sbjct: 251 VARYVSKSNANSGRVTIEYVLLAGVNDSPKQAKELAKTLA--NTPCKINLIPFNPHQDSS 308
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
+++P +AV F L H T R+TRG D AACGQL E + +I
Sbjct: 309 FKKPSIEAVNKFYQVLIDHGFTVVTRKTRGDDIKAACGQLVGEVKNKMKKI 359
>gi|156973378|ref|YP_001444285.1| ribosomal RNA large subunit methyltransferase N [Vibrio harveyi
ATCC BAA-1116]
gi|388601640|ref|ZP_10160036.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
DS40M4]
gi|444426831|ref|ZP_21222235.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|205829926|sp|A7MU39.1|RLMN_VIBHB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
gi|444239929|gb|ELU51482.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 375
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|127512219|ref|YP_001093416.1| ribosomal RNA large subunit methyltransferase N [Shewanella loihica
PV-4]
gi|205829882|sp|A3QCF9.1|RLMN_SHELP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4]
Length = 373
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 142/290 (48%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + + + +ETV IP ED R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SADGTIKFAINVGNGQEVETVYIPEED-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + +E + ++NVV MGMGEP+LNLK+V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLKNVMPAIDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + L Y LQ LA
Sbjct: 191 SLSKRRVTVSTSGVVPALDILGDNLDVALAVSIHAPNDELRDVLVPVNKKYPLQEFLAAI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND + A ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKDT--PCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|398845270|ref|ZP_10602311.1| 23S rRNA methyltransferase [Pseudomonas sp. GM84]
gi|398253722|gb|EJN38838.1| 23S rRNA methyltransferase [Pseudomonas sp. GM84]
Length = 381
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 135/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +I++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVIRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAMKIMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNQLVPINKKYPLKVLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ + VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGEDIDAACGQL 348
>gi|397164379|ref|ZP_10487834.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
gi|396093527|gb|EJI91082.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
Length = 388
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 147/306 (48%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + ++DGT+K I + D R +ETV IP ED R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSSDGTIKWAIAVGDQR-VETVYIPEED-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTL-AIRS-------------------AGVNDQVEHAVE 235
Y +++ L A+R VND EHA E
Sbjct: 239 HAPNDEIRDEIVPINKKYNIETFLGAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHE 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F L S+ TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMSYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|429755476|ref|ZP_19288128.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429174214|gb|EKY15700.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 351
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 154/326 (47%), Gaps = 56/326 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RG Q W + G T +P++ R L E +++ + + + DGT+K
Sbjct: 26 PFRGNQVYEWLWQKGVH-TFEEMTSLPKATREMLSEH-FSINHIKVDVMQRSNDGTIKNA 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI
Sbjct: 84 VRLHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFD 138
Query: 148 QVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTV 201
QV I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST
Sbjct: 139 QVKVIDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTS 198
Query: 202 GVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG----- 246
G+P IKK+A +++ LA+ V + EL E L W +
Sbjct: 199 GIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKTKNRI 258
Query: 247 ----------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VNLI +NPI+ +Q+ KA+ + LE
Sbjct: 259 TYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLE 318
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
IT ++R +RG D AACGQL N+
Sbjct: 319 EAGITVTVRHSRGKDIDAACGQLANK 344
>gi|119025804|ref|YP_909649.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
adolescentis ATCC 15703]
gi|154487364|ref|ZP_02028771.1| hypothetical protein BIFADO_01214 [Bifidobacterium adolescentis
L2-32]
gi|205829670|sp|A1A1I4.1|RLMN_BIFAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|118765388|dbj|BAF39567.1| hypothetical protein BAD_0786 [Bifidobacterium adolescentis ATCC
15703]
gi|154083882|gb|EDN82927.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium adolescentis
L2-32]
Length = 386
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 146/306 (47%), Gaps = 63/306 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P + R+D EA + + R V T+K L +L D LIE+V + + P R T
Sbjct: 80 PAARRSDAAEAFFPELIHEVTRQVADGGTTIKTLWRLFDGSLIESVLM-----RYPTRTT 134
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVF 165
C+SSQVGC + C FCATG+ G +RN+S+ EIV QV + + R++N+VF
Sbjct: 135 LCISSQVGCGMGCPFCATGQLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGSGRLSNIVF 194
Query: 166 MGMGEPMLNLKSVLEAHRCLN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI 221
MGMGEPM N KSVL A R ++ + I R IT+STVGV I+KLA + LA+
Sbjct: 195 MGMGEPMGNYKSVLSAVRQISSMPPEGFGISARNITVSTVGVVPGIRKLAEEGIPVRLAV 254
Query: 222 R---------------------------------------------SAGVNDQVEHAVEL 236
G+NDQ EHA L
Sbjct: 255 SLHAPSDELRDELVPMNKRFNTKQVLDAAHDYYLASKRRVSIEYALMRGINDQAEHAKLL 314
Query: 237 AELLHEWGRG-HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
A+ L+ +G HVN IP NPIEGS + + F L + IT ++R TRG D
Sbjct: 315 AKRLNHYGDDWAHVNPIPLNPIEGSKWTASKPEDERRFLEILHNAGITATLRDTRGQDID 374
Query: 296 AACGQL 301
ACGQL
Sbjct: 375 GACGQL 380
>gi|420447710|ref|ZP_14946597.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-43]
gi|393062204|gb|EJB63062.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-43]
Length = 357
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SAKMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv.
syringae FF5]
gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv.
syringae 642]
gi|422616365|ref|ZP_16685071.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
str. M301072]
gi|424071090|ref|ZP_17808517.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|440720311|ref|ZP_20900730.1| hypothetical protein A979_05905 [Pseudomonas syringae BRIP34876]
gi|440726439|ref|ZP_20906693.1| hypothetical protein A987_10307 [Pseudomonas syringae BRIP34881]
gi|443645105|ref|ZP_21128955.1| 23S Ribosomal RNA methyltransferase N [Pseudomonas syringae pv.
syringae B64]
gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
str. M301072]
gi|407999549|gb|EKG39931.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|440366347|gb|ELQ03431.1| hypothetical protein A979_05905 [Pseudomonas syringae BRIP34876]
gi|440366600|gb|ELQ03679.1| hypothetical protein A987_10307 [Pseudomonas syringae BRIP34881]
gi|443285122|gb|ELS44127.1| 23S Ribosomal RNA methyltransferase N [Pseudomonas syringae pv.
syringae B64]
Length = 382
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 151/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKYPLKVLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
E+D A
Sbjct: 371 EADAA 375
>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|417673263|ref|ZP_12322718.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
Length = 384
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 ERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|383750457|ref|YP_005425560.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori ELS37]
gi|380875203|gb|AFF20984.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori ELS37]
Length = 357
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDNLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619]
gi|205829826|sp|B1JDQ5.1|RLMN_PSEPW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619]
Length = 381
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 135/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +I++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVIRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAMKIMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNQLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ + VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
amazonensis SB2B]
gi|205829877|sp|A1S866.1|RLMN_SHEAM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 373
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 147/303 (48%), Gaps = 64/303 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SSDGTIKFAINVGQGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL+ EIVGQ+ + +E + ++NVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLANVVPAMNIMLDDYGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y LQ LA
Sbjct: 191 GLSKRRVTLSTSGVVPALDKLGDVIDVALAVSIHAPNDELRDVLVPINKKYPLQEFLAAI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND + A ELA+L+ + +NLIPFNP GS Y
Sbjct: 251 RRYLEKSNANRGRVTLEYVMLDHINDSTDQAHELAKLMKDT--PCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + FA L + +T +R+TRG D AACGQL + + R+ + ES
Sbjct: 309 GRSSNSRIDRFAKVLMEYDLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL-AKKRMQESQ 367
Query: 323 IAV 325
I+V
Sbjct: 368 ISV 370
>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
gi|123748144|sp|Q4FTX0.1|RLMN_PSYA2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71038230|gb|AAZ18538.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter arcticus
273-4]
Length = 409
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 157/340 (46%), Gaps = 70/340 (20%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + G + + + +S R+ L + I R + DGT K +
Sbjct: 50 PFRSTQVIKWIYQQGVTDFEQMTN-LSKSLRDKLSANACVIPPKVIHRQYSD-DGTRKWV 107
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R+L++ EI+G
Sbjct: 108 FEVTGGSLVETVLIPADDSKLNGRKTLCISSQVGCALDCSFCSTGKQGFERDLTAAEILG 167
Query: 148 QVL------------AIEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
Q+ ++E I +++ VTNVV MGMGEP+LN + V+ + + D
Sbjct: 168 QLWVANASYMSDENDSLENIDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAY 227
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV + +LA Y L+ +A
Sbjct: 228 GLSKRRVTLSTSGVVPKMYELAKELDVALAISLHAPNDELRNELVPINKKYPLEQLMAAA 287
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ GVND EHA +L LL + +NLIPFNP ++
Sbjct: 288 RNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGDLPS--KINLIPFNPFPHAN 345
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y + + AF+ L +IRQTRG D AACGQL
Sbjct: 346 YDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAACGQL 385
>gi|420396004|ref|ZP_14895227.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY1124]
gi|393011665|gb|EJB12851.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY1124]
Length = 357
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNVGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|422628419|ref|ZP_16693628.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 382
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 151/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKYPLKVLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
E+D A
Sbjct: 371 EADAA 375
>gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 389
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 158/336 (47%), Gaps = 66/336 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W R GA + + +SFR L++ G I R TAADGT K L
Sbjct: 31 PFRAKQLERWIHRRGA-RDFSEMTDLAKSFRAKLEKVAEIRGP-EIIRDKTAADGTRKWL 88
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ + +E V IP +D +G T CVSSQ GC + C FC+TGK GF+RNL + EI+G
Sbjct: 89 LDVGSGNAVEMVYIP-QDGRG----TLCVSSQAGCAMNCLFCSTGKQGFNRNLKASEIIG 143
Query: 148 QV----------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRM 195
Q+ L I + + ++NVV MGMGEP+ NL +V+ + + + D G +R
Sbjct: 144 QLRHAEHTLRKDLGITDENERVISNVVMMGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRR 203
Query: 196 ITISTVGVPNTIKKLAS---------------------------YKLQSTLA-------- 220
+T+ST G+ + KLA + L+ LA
Sbjct: 204 VTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKHPLEQLLAACKRYLEH 263
Query: 221 ----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
I GVND + A EL L+ + NLIPFNP GS +R + V
Sbjct: 264 APRDFITFEYILIGGVNDSLAQAKELITLVQDI--PCKFNLIPFNPFPGSGLERSKPEEV 321
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
AFA L I T++R+ RG D AACGQL E +
Sbjct: 322 KAFADRLNGAGIVTTVRKVRGDDIDAACGQLAGEIK 357
>gi|424066438|ref|ZP_17803904.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408002287|gb|EKG42546.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 387
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 151/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 83 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 137
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 138 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 197
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 198 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKYPLKVLLESC 257
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 258 RRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 315
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 316 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERYIAVRELSA 375
Query: 320 ESDIA 324
E+D A
Sbjct: 376 EADAA 380
>gi|217034559|ref|ZP_03439968.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
gi|216942979|gb|EEC22462.1| hypothetical protein HP9810_874g16 [Helicobacter pylori 98-10]
Length = 357
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 157/336 (46%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRQSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + + D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMRDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|392547027|ref|ZP_10294164.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
rubra ATCC 29570]
Length = 376
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 146/303 (48%), Gaps = 63/303 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + L+ + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 78 ASDGTIKYALVLDGGQEVETVWIPEKD-----RATLCVSSQVGCALECTFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF--------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
NL EI+GQV + + K +TNVV MGMGEP+LN+ +V+ A + D
Sbjct: 133 NLKVSEIIGQVWRVAKDIGLHDGDSTKRPITNVVMMGMGEPLLNINNVVPAMELMMDDWA 192
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +T+ST GV + L Y ++ LA
Sbjct: 193 FGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNPLRDELVPINKKYPIEEFLAA 252
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ GVND +HA EL ++L G +NLIPFNP G++Y
Sbjct: 253 CRRYIDGSKANKDVTIEYVMLQGVNDSTDHAHELVQVLK--GTPSKINLIPFNPFPGNEY 310
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + F+ L++ +T +R+TRG D AACGQL + R+ ++
Sbjct: 311 GRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVVDRTKRLAKKKQLEDNA 370
Query: 323 IAV 325
IAV
Sbjct: 371 IAV 373
>gi|350530359|ref|ZP_08909300.1| ribosomal RNA large subunit methyltransferase N [Vibrio
rotiferianus DAT722]
Length = 375
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|308185186|ref|YP_003929319.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori SJM180]
gi|308061106|gb|ADO03002.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori SJM180]
Length = 357
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
Length = 383
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 156/336 (46%), Gaps = 65/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GAS + + +S R L+ G I V+A DGTVK L
Sbjct: 35 RATQLFRWIHQRGASDFDQMS-DLAKSLREKLRGCAHVAGLQAISEHVSA-DGTVKWLFD 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+ D +ETV IP ED++G T C+SSQ GC + C FC+TG GFSRNL++ EI+ Q+
Sbjct: 93 VGDGNAVETVFIP-EDDRG----TLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQL 147
Query: 150 LAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIST 200
E + R ++NVV MGMGEP+ N +++ A R + D G +R +T+ST
Sbjct: 148 WYAEHALRQRRGDGERVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVST 207
Query: 201 VGVPNTIKKLA---------------------------SYKLQSTLA------------- 220
GV + +LA Y L LA
Sbjct: 208 SGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDF 267
Query: 221 -----IRSAGVNDQVEHAVELAELL----HEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
GVNDQ EHA +L +L+ + G NLIPFNP S +R AV
Sbjct: 268 ITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVT 327
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
AFA L I T++R+TRG D AACGQL + +
Sbjct: 328 AFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKD 363
>gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4]
gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4]
Length = 375
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ +ND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHINDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|420397635|ref|ZP_14896851.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY1313]
gi|393011180|gb|EJB12368.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori CPY1313]
Length = 357
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 157/336 (46%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRQSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + + D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMRDKKIDEETNVILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|383934221|ref|ZP_09987663.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383704677|dbj|GAB57754.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 375
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 138/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K ++ L + +ETV IP +D R T CVSSQVGC L CSFC+T + GF+R
Sbjct: 78 SSDGTIKFVMGLSGGQEVETVWIPEKD-----RRTLCVSSQVGCALDCSFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL+ EI+GQV + ++ VTNVV MGMGEP+LNL +V+ A + +D
Sbjct: 133 NLTVAEIIGQVWRVAQLIGSYGDTGDKPVTNVVMMGMGEPLLNLNNVVPAMELMLEDFGF 192
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + L Y ++ LA
Sbjct: 193 GLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNELRNELVPVNRKYPMEEFLAAS 252
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ GVND +E A ELA+ L + +NLIPFNP GS Y+
Sbjct: 253 RRYVANSKANDKVTVEYVMLEGVNDSMEQAHELAQALKD--TPSKINLIPFNPYPGSPYK 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F L+ + T +R+TRG D AACGQL
Sbjct: 311 RSSNSRIDRFNKVLQEYGFTVIVRKTRGDDIDAACGQL 348
>gi|386746842|ref|YP_006220059.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori HUP-B14]
gi|384553091|gb|AFI08039.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori HUP-B14]
Length = 357
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|377576744|ref|ZP_09805728.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
gi|377542776|dbj|GAB50893.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
Length = 388
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 149/309 (48%), Gaps = 67/309 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + +ADGT+K IK+ D +L+ETV IP ED R
Sbjct: 67 INKVLRNKLKEIAEI--RAPEVAEEQRSADGTIKWAIKIAD-QLVETVYIPEED-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I + +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKKTGVRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + +ND EHA +
Sbjct: 239 HAPTDEIRDRIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHINDGTEHAHQ 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAE L + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAECLKD--TPCKLNLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQLRNE 304
AACGQL E
Sbjct: 357 AACGQLAGE 365
>gi|401677597|ref|ZP_10809571.1| RlmN Protein [Enterobacter sp. SST3]
gi|400215120|gb|EJO46032.1| RlmN Protein [Enterobacter sp. SST3]
Length = 388
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 146/306 (47%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + +ADGT+K I + D R +ETV IP ED R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSADGTIKWAIAVGDQR-VETVYIPEED-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA +
Sbjct: 239 HAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQ 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|376316638|emb|CCG00024.1| radical SAM enzyme, Cfr family [uncultured Flavobacteriia
bacterium]
Length = 348
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 160/336 (47%), Gaps = 60/336 (17%)
Query: 24 FFTCPS----RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FFT RG Q W + GA ++ + + +A +++ + + +
Sbjct: 19 FFTSNGDQAFRGTQVYEWLWQKGAHHFDDMTNLSKETRQ--MMDANFSINHIKVDSMQRS 76
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT+K I+L D ++E+V IP R TACVSSQVGC L C FCAT + RN
Sbjct: 77 TDGTIKNGIRLHDGMIVESVLIPT-----AKRSTACVSSQVGCSLDCKFCATSRLKRMRN 131
Query: 140 LSSHEIVGQVLAIE---EIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ-- 193
L+ EI QV+AI+ +++ +R ++N+VFMGMGEP++N ++L+A + +G
Sbjct: 132 LNPDEIYDQVVAIDKQSKLYYNRPLSNIVFMGMGEPLMNYNNLLKAIEKITSKEGLGMSP 191
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW 243
+ I +ST GVP IKK+A ++ LA+ D V ++ +L E L W
Sbjct: 192 KRIVVSTSGVPKMIKKMADDAVKFNLAVSLHSAIDSVRTSIMPFNETFPLKDLREALKHW 251
Query: 244 GRG---------------------------------HHVNLIPFNPIEGSDYQRPYKKAV 270
VNLI +NPI+ +Q+ A+
Sbjct: 252 YAATSRIITYEYVVWEGINDTKIDIEALIDFCKFAPSKVNLIEYNPIDDGVFQQASNAAI 311
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+ LE+ IT ++R++RG D AACGQL N+ Q
Sbjct: 312 DLYVSMLEAKNITVTVRRSRGKDIDAACGQLANKDQ 347
>gi|401764742|ref|YP_006579749.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
gi|400176276|gb|AFP71125.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
Length = 388
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 146/306 (47%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + +ADGT+K I + D R +ETV IP ED R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSADGTIKWAIAVGDQR-VETVYIPEED-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA +
Sbjct: 239 HAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQ 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|365971621|ref|YP_004953182.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
gi|365750534|gb|AEW74761.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
Length = 388
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 146/306 (47%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + +ADGT+K I + D R +ETV IP ED R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSADGTIKWAIAVGDQR-VETVYIPEED-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA +
Sbjct: 239 HAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQ 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|373113514|ref|ZP_09527739.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
gi|371654473|gb|EHO19841.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
Length = 284
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 146/280 (52%), Gaps = 53/280 (18%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
V+ D T K L +LED IETV + D++ T C+SSQVGCP++C+FCATG+ GF
Sbjct: 8 VSKIDKTEKFLFQLEDGNTIETVLLRHRDQRN----TLCISSQVGCPVKCTFCATGQDGF 63
Query: 137 SRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
RNL EI+ QV IE R +TN+VFMGMGEP++N+ ++L+A L+ + + I
Sbjct: 64 VRNLRVSEILNQVYTIERRLNKRGEKLTNLVFMGMGEPLINIDALLKALEILSCEEGICI 123
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQVEHAV---------ELAELLH 241
+R ITIST G+ I+++ K LAI + +N++ + + +L+ +L
Sbjct: 124 SKRKITISTSGIVPAIERILMEKTPVELAISLHSAINEKRDRIIPINKAYPLEDLSAVLL 183
Query: 242 EWGR---------------------------------GHHVNLIPFNPIEGSDYQRPYKK 268
E+ R H VNLIP NP+ + +RP +K
Sbjct: 184 EYQRQTKRRLTFEYILIKDFNVSEGDANALADFAHQFDHIVNLIPCNPVSETGLERPSEK 243
Query: 269 AVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQK 307
+ F L++ K+ S+RQ +G D ACGQLR +K
Sbjct: 244 KIERFYEYLKNVRKVNVSLRQEKGTDIDGACGQLRQNQRK 283
>gi|363580506|ref|ZP_09313316.1| ribosomal RNA large subunit methyltransferase N [Flavobacteriaceae
bacterium HQM9]
Length = 350
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 143/293 (48%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
L E + + + + + +ADGT+K ++L D ++E+V IP R TACVSSQV
Sbjct: 62 LLETHFVINHIRVDQMQRSADGTIKNAVRLHDGLVVESVLIPT-----ATRTTACVSSQV 116
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C FCAT + RNL+ EI QV+AI+ H ++N+VFMGMGEP++N
Sbjct: 117 GCSLNCKFCATARLKRMRNLNPDEIYDQVVAIDNESRLYHNHPLSNIVFMGMGEPLMNYN 176
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+V +A + +G + IT+ST GVP IKK+A ++ LA+ D+V +
Sbjct: 177 NVTKAIAMITSPEGLGMSPKRITVSTSGVPKMIKKMADDAVRFQLAVSLHSAIDEVRTKI 236
Query: 235 ----------ELAELLHEWGRGHH---------------------------------VNL 251
+L E L W VNL
Sbjct: 237 MPFNENFPLADLKESLQYWYAKTQSRITYEYVVWKGINDKKKDIDALVKFCMYVPCKVNL 296
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI+ ++Q+ ++V + ALE I ++R++RG D AACGQL N+
Sbjct: 297 IEYNPIDDGEFQQASSESVTNYINALEKRNIVVNVRRSRGKDIDAACGQLANK 349
>gi|317472521|ref|ZP_07931841.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
gi|316899998|gb|EFV21992.1| cfr family radical SAM enzyme [Anaerostipes sp. 3_2_56FAA]
Length = 354
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 158/339 (46%), Gaps = 61/339 (17%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
R +Q W H R +S +P++ + LQE + V+ DGT K L
Sbjct: 25 RAKQIFEWFHKRLASSLDE--MNNLPKNLKEKLQEKYEAAELKEVETYVSRIDGTRKYLF 82
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
+L D +IE+V + + + C+SSQ GC + C FCA+ GG RNL E++GQ
Sbjct: 83 QLNDGNMIESVLMKYKHGN-----SVCISSQAGCRMGCRFCASTLGGLDRNLLPSEMLGQ 137
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNT 206
+ I++ RV+NVV MG GEP+ N +++L R L K + + QR +T+ST G+
Sbjct: 138 IYYIQKDTGERVSNVVVMGTGEPLDNYENLLRFIRLLTDEKGLNLSQRNLTVSTCGLVPK 197
Query: 207 IKKLASYKLQSTLAIR-------------------------------------------- 222
I++LA KLQ TLAI
Sbjct: 198 IRELADEKLQMTLAISLHASNDEMRKSLMPVANQYSMEDLLAACKYYFDRTGRRITFEYS 257
Query: 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
A VND ++A EL L G HVNLIP NPI+ D+++ + V F LE ++
Sbjct: 258 LVAEVNDSPQNAKELCRFL--GGFPCHVNLIPVNPIKERDFRQSMPEFVNDFKNILEKNR 315
Query: 282 ITTSIRQTRGLDASAACGQLR----NEFQKSPLRIDSSN 316
+ +IR+ G D +AACGQLR N +K +R N
Sbjct: 316 VNVTIRREMGRDINAACGQLRRKKLNSVEKQEIRTKKEN 354
>gi|345300389|ref|YP_004829747.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
gi|345094326|gb|AEN65962.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
Length = 388
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 146/306 (47%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + +ADGT+K I + D R +ETV IP +D R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSADGTIKWAIAVGDQR-VETVYIPEDD-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA E
Sbjct: 239 HAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHE 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51]
gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51]
Length = 381
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 135/278 (48%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +I++ +ETV IP +D R T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVIRVASGSCVETVYIPTDD-----RGTLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + + D+
Sbjct: 133 NLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAMKIMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ + VNDQ EHA ++ ELL + +NLIPFNP S Y+
Sbjct: 253 MGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L + R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|256819328|ref|YP_003140607.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
gi|256580911|gb|ACU92046.1| radical SAM enzyme, Cfr family [Capnocytophaga ochracea DSM 7271]
Length = 350
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 154/326 (47%), Gaps = 56/326 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RG Q W + G T +P++ R L E +++ + + + DGT+K
Sbjct: 26 PFRGNQVYEWLWQKGVH-TFEEMTSLPKATREMLSEH-FSINHIKVDVMQRSNDGTIKNA 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI
Sbjct: 84 VRLHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFD 138
Query: 148 QVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTV 201
QV I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST
Sbjct: 139 QVKVIDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTS 198
Query: 202 GVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG----- 246
G+P IKK+A +++ LA+ V + EL E L W +
Sbjct: 199 GIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKTKNRI 258
Query: 247 ----------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VNLI +NPI+ +Q+ KA+ + LE
Sbjct: 259 TYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLE 318
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
IT ++R +RG D AACGQL N+
Sbjct: 319 EAGITVTVRHSRGKDIDAACGQLANK 344
>gi|384893391|ref|YP_005767484.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Cuz20]
gi|308062688|gb|ADO04576.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Cuz20]
Length = 357
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCTFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|381393545|ref|ZP_09919266.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379330761|dbj|GAB54399.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 388
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 136/279 (48%), Gaps = 63/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K I L+ + +ETV IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 90 ASDGTIKFAIMLDGGQEVETVWIPETD-----RATLCVSSQVGCALECTFCSTAQQGFNR 144
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + ++ K +TNVV MGMGEP+LNLK+V+ A + D
Sbjct: 145 NLSVAEIIGQVWRVATFIGLSKDTSKRPITNVVMMGMGEPLLNLKNVVPAMDIMLDDFGF 204
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + L Y ++ LA
Sbjct: 205 GLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAADNELRDELVPVNKKYPIEEFLAAV 264
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ GVND + A LA +L + +NLIPFNP GS Y
Sbjct: 265 RRYLAKSKANQGRVTVEYVMLNGVNDSTDQAHALARVLQD--TPSKINLIPFNPYPGSPY 322
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ F+ L S+ TT +R+TRG D AACGQL
Sbjct: 323 TCSSNSRIDRFSKVLMSYGFTTVVRKTRGDDIDAACGQL 361
>gi|118444223|ref|YP_878314.1| ribosomal RNA large subunit methyltransferase N [Clostridium novyi
NT]
gi|205829738|sp|A0Q112.1|RLMN_CLONN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|118134679|gb|ABK61723.1| radical SAM enzyme, Cfr family [Clostridium novyi NT]
Length = 343
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ +S + L+E + + + V+ DGT K L + ED +IE+V + +
Sbjct: 47 ISKSTKEKLKENFYIQIPNVVKKYVSNIDGTEKFLFEYEDGNIIESVVMKYKHGN----- 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ CVS+Q+GC + C FCA+ G RNL+S EI+ QVL ++ R++NVV MG GEP+
Sbjct: 102 SICVSTQIGCRMGCKFCASTVDGVVRNLTSGEIIAQVLKAQKEICDRISNVVLMGSGEPL 161
Query: 173 LNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
N +V++ + +N + + IGQR IT+ST G+ IK+LA K+Q TLAI
Sbjct: 162 DNYDNVIKFLKLINDEDALNIGQRHITLSTCGIVPKIKELADQKMQITLAISLHAPNNEI 221
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
GVND E+A EL ++ G
Sbjct: 222 RKSMMPIANKYTLEELLDACRYYYRTTNRRITFEYALVKGVNDSRENAEELIKI--SKGM 279
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
H+NLIP N I+ ++Y+R K + F L H I T+IR+ G D + ACGQLR +
Sbjct: 280 LCHINLIPVNEIKENNYERSKSKDIEEFKETLIKHGIETTIRREMGSDINGACGQLRRNY 339
>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
gi|205829828|sp|A5WGQ4.1|RLMN_PSYWF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148572786|gb|ABQ94845.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter sp. PRwf-1]
Length = 403
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 150/334 (44%), Gaps = 65/334 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R Q W + G + + + + R L E LP + + DGT K
Sbjct: 45 PFRATQVMKWIYQHGVTDFAQMTN-LSKGLREKLSEQACI--ELPEVMHKEFSEDGTRKW 101
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
+ K+ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R+L++ EI+
Sbjct: 102 VFKVAGGSLVETVLIPADDSKVNGRKTLCISSQVGCALDCSFCSTGKQGFERDLTAAEII 161
Query: 147 GQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRM 195
GQ+ + ++ VTNVV MGMGEP+LN V+ + + D G +R
Sbjct: 162 GQLWVANASYMEGVDSTEWQNNVTNVVMMGMGEPLLNYTPVVSSMGLMLSDHAYGLSKRR 221
Query: 196 ITISTVGVPNTIKKL---------------------------ASYKLQSTLA-------- 220
+T+ST GV + +L Y L +A
Sbjct: 222 VTLSTSGVVPKMYELYKDIDVALAISLHAPNDELRNELVPINKKYPLSELIAAAKAYVHD 281
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
+ AGVND EHA +L LL G +NLIPFNP + Y R
Sbjct: 282 NNPRHKKHVTIEYVMLAGVNDSDEHAQQLVALLD--GLPSKINLIPFNPFPHAPYDRSSN 339
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ AF+ L + +IRQTRG D AACGQL
Sbjct: 340 NRIHAFSNILNNAGFVCTIRQTRGDDIDAACGQL 373
>gi|50083794|ref|YP_045304.1| Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1]
gi|81393776|sp|Q6FEM6.1|RLMN_ACIAD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme
[Acinetobacter sp. ADP1]
Length = 414
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 136/285 (47%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDNR--LIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ + L+ETV IP ED+ G R T C+SSQVGC L CSFC+TGK GF
Sbjct: 104 SKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGS-RKTLCISSQVGCALDCSFCSTGKQGF 162
Query: 137 SRNLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ + + VTNVV MGMGEP+LN K V+ + +
Sbjct: 163 QRDLTPAEIIGQLWVANQSYVEDVPVAERTRAVTNVVMMGMGEPLLNFKPVVHSMSIMLD 222
Query: 188 DVQIG--QRMITISTVGVPNTIKKLAS---------------------------YKLQST 218
D G +R +T+ST GV I KLA Y L+
Sbjct: 223 DYAYGMSKRRVTLSTSGVVPMIDKLAEELDVALAISLHAPNNPLRDELVPINKKYPLEQL 282
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVND EHA +L +LL +NLIPFNP
Sbjct: 283 IAAAQRYITKDGNESARKHVTIEYVMLDGVNDHPEHAQQLVKLLKNL--PSKINLIPFNP 340
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + ++AF L +IRQTRG D AACGQL
Sbjct: 341 FPHAPYGRSSRNRIMAFQKTLSDAGFVCTIRQTRGDDIDAACGQL 385
>gi|315224773|ref|ZP_07866595.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
gi|420160254|ref|ZP_14667039.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga ochracea str.
Holt 25]
gi|314945266|gb|EFS97293.1| cfr family radical SAM enzyme [Capnocytophaga ochracea F0287]
gi|394760834|gb|EJF43325.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga ochracea str.
Holt 25]
Length = 350
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 154/326 (47%), Gaps = 56/326 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RG Q W + G T +P++ R L E +++ + + + DGT+K
Sbjct: 26 PFRGNQVYEWLWQKGVH-TFEEMTSLPKATREMLSEH-FSINHIKVDVMQRSNDGTIKNA 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI
Sbjct: 84 VRLHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFD 138
Query: 148 QVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTV 201
QV I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST
Sbjct: 139 QVKVIDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTS 198
Query: 202 GVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG----- 246
G+P IKK+A +++ LA+ V + EL E L W +
Sbjct: 199 GIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKTKNRI 258
Query: 247 ----------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VNLI +NPI+ +Q+ KA+ + LE
Sbjct: 259 TYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLE 318
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
IT ++R +RG D AACGQL N+
Sbjct: 319 EAGITVTVRHSRGKDIDAACGQLANK 344
>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
gi|205829704|sp|A1W574.1|RLMN_ACISJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
Length = 374
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 156/336 (46%), Gaps = 65/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GAS + + +S R L+ G I V+A DGTVK L
Sbjct: 26 RATQLFRWIHQRGASDFDQMS-DLAKSLREKLRGCAHVAGLQAISEHVSA-DGTVKWLFD 83
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+ D +ETV IP ED++G T C+SSQ GC + C FC+TG GFSRNL++ EI+ Q+
Sbjct: 84 VGDGNAVETVFIP-EDDRG----TLCISSQAGCAVGCRFCSTGHQGFSRNLTTGEILAQL 138
Query: 150 LAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIST 200
E + R ++NVV MGMGEP+ N +++ A R + D G +R +T+ST
Sbjct: 139 WYAEHALRQRRGDGERVISNVVMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVST 198
Query: 201 VGVPNTIKKLA---------------------------SYKLQSTLA------------- 220
GV + +LA Y L LA
Sbjct: 199 SGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDF 258
Query: 221 -----IRSAGVNDQVEHAVELAELL----HEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
GVNDQ EHA +L +L+ + G NLIPFNP S +R AV
Sbjct: 259 ITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFNLIPFNPFPASGLRRSPPAAVT 318
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
AFA L I T++R+TRG D AACGQL + +
Sbjct: 319 AFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKD 354
>gi|358063778|ref|ZP_09150380.1| ribosomal RNA large subunit methyltransferase N [Clostridium
hathewayi WAL-18680]
gi|356698026|gb|EHI59584.1| ribosomal RNA large subunit methyltransferase N [Clostridium
hathewayi WAL-18680]
Length = 364
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 148/298 (49%), Gaps = 58/298 (19%)
Query: 72 PIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCAT 131
P+ ++ DGT K L +LED +IE+V + + + C+SSQVGC + C FCA+
Sbjct: 69 PVDVKISQIDGTRKYLFRLEDGNVIESVLMKYKHGN-----SVCISSQVGCRMGCRFCAS 123
Query: 132 GKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDV 189
G RNL++ E++ Q+ I+ RV+NVV MG GEPM N +VL R L+ +
Sbjct: 124 TLDGLERNLTASEMLEQIYRIQCHTGERVSNVVIMGSGEPMDNYDNVLRFIRLLSDGNGL 183
Query: 190 QIGQRMITISTVGVPNTIKKLASYKLQSTLAI----------RS---------------- 223
I QR IT+ST G+ +K+LA LQ TLA+ RS
Sbjct: 184 NISQRNITVSTCGIVPKMKELADENLQITLALSLHAPNDTVRRSLMPIANRYTLDEVMEA 243
Query: 224 -------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+GVND +E A L L+ + + HVNLIP NPI+ DY +
Sbjct: 244 CHYYFDKTGRRLTFEYSLVSGVNDNLEEARALTALIKD--QHGHVNLIPVNPIKERDYVQ 301
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
+KA+ F LE + I +IR+ G D + ACGQLR KS L + S SS S+
Sbjct: 302 SNQKAIADFKNLLEKNGINVTIRREMGRDINGACGQLR----KSYLEENQSGESSPSE 355
>gi|407684519|ref|YP_006799693.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407688447|ref|YP_006803620.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407700813|ref|YP_006825600.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407246130|gb|AFT75316.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407249960|gb|AFT79145.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407291827|gb|AFT96139.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 372
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 136/279 (48%), Gaps = 63/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +E+V IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 74 ASDGTIKFALTLEGGQEVESVWIPETD-----RATLCVSSQVGCALECTFCSTAQQGFNR 128
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + K +TNVV MGMGEP+LNLK+V+ A + D
Sbjct: 129 NLSVSEIIGQVWRVATFLGLSKDSSKRPITNVVMMGMGEPLLNLKNVVPAMDIMLDDFGF 188
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + L Y +++ LA
Sbjct: 189 GLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPTDELRNEIVPINKKYNIEAFLAGV 248
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ + +ND E A +LA++L + +NLIPFNP GS Y
Sbjct: 249 RRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQLAKVLKD--TPSKINLIPFNPYPGSPY 306
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ FA L + TT +R+TRG D AACGQL
Sbjct: 307 TCSSNSRIDRFAKVLMEYGFTTVVRKTRGDDIDAACGQL 345
>gi|386754900|ref|YP_006228118.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Shi112]
gi|384561158|gb|AFI01625.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Shi112]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|424032150|ref|ZP_17771570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|424045068|ref|ZP_17782635.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
gi|408876155|gb|EKM15284.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|408886922|gb|EKM25572.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
Length = 375
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 144/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L + T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQL 347
>gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
Length = 384
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 158/336 (47%), Gaps = 66/336 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W R GA + + +SFR L++ G I R TAADGT K L
Sbjct: 26 PFRAKQLERWIHRRGA-RDFSEMTDLAKSFRAKLEKVAEIRGP-EIIRDKTAADGTRKWL 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ + +E V IP +D +G T CVSSQ GC + C FC+TGK GF+RNL + EI+G
Sbjct: 84 LDVGSGNAVEMVYIP-QDGRG----TLCVSSQAGCAMNCLFCSTGKQGFNRNLKASEIIG 138
Query: 148 QV----------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRM 195
Q+ L I + + ++NVV MGMGEP+ NL +V+ + + + D G +R
Sbjct: 139 QLRHAEHTLRKDLGITDENERVISNVVMMGMGEPLQNLDAVIPSLKLMLDDNAYGLSRRR 198
Query: 196 ITISTVGVPNTIKKLAS---------------------------YKLQSTLA-------- 220
+T+ST G+ + KLA + L+ LA
Sbjct: 199 VTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKHPLEQLLAACKRYLEH 258
Query: 221 ----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
I GVND + A EL L+ + NLIPFNP GS +R + V
Sbjct: 259 APRDFITFEYILIGGVNDSLAQAKELITLVQDI--PCKFNLIPFNPFPGSGLERSKPEEV 316
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
AFA L I T++R+ RG D AACGQL E +
Sbjct: 317 KAFADRLNGAGIVTTVRKVRGDDIDAACGQLAGEIK 352
>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 388
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 148/306 (48%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + ++DGT+K I + D R +ETV IP +D R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSSDGTIKWAIAVGDQR-VETVYIPEDD-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I + +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA +
Sbjct: 239 HAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQ 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L S+ TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|367470443|ref|ZP_09470146.1| Ribosomal RNA large subunit methyltransferase N [Patulibacter sp.
I11]
gi|365814500|gb|EHN09695.1| Ribosomal RNA large subunit methyltransferase N [Patulibacter sp.
I11]
Length = 574
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 146/299 (48%), Gaps = 66/299 (22%)
Query: 53 VPQSFRNDLQEAGWTVGRLPI-----FRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK 107
+P + R L E R+P R+ A+DGT KLL+ D R IETV + +D
Sbjct: 285 LPAALREQLSE------RVPFSTLHQVRSAKASDGTEKLLLTTHDGRPIETVLMRYKDG- 337
Query: 108 GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG 167
R + CVSSQ GCPL C+FCATG+ F RNL++ EI+ Q LA+ + + + VFMG
Sbjct: 338 ---RRSICVSSQSGCPLTCTFCATGQMKFGRNLTAWEILDQALALRRLDA--LNHCVFMG 392
Query: 168 MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA------- 220
MGEPM+NL +VLE R L D+ I R ISTVG I +L + LA
Sbjct: 393 MGEPMMNLPNVLEVCRRL-PDLGITNRRTGISTVGWVPGIDQLTESDVPVRLAWSLHAPE 451
Query: 221 --IRS------------------------------------AGVNDQVEHAVELAELLHE 242
+RS AGVND V A +LA+LL
Sbjct: 452 DQLRSEIMPVNDRYALADVKAACDRFYERRRKMIFVEYVMLAGVNDSVAQARQLADLLEP 511
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
W + +NLIP+NP + S Y + ++ AF ALE +IR RG D AACGQL
Sbjct: 512 W--KYKINLIPYNPTD-SIYDGSARGSMDAFRDALEDRGYNATIRLIRGRDIDAACGQL 567
>gi|336124879|ref|YP_004566927.1| Radical SAM family enzyme [Vibrio anguillarum 775]
gi|335342602|gb|AEH33885.1| Radical SAM family enzyme [Vibrio anguillarum 775]
Length = 386
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 144/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 90 SSDGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 143
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 144 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 203
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 204 GLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 263
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND ++HA ELA+L+ G +NLIPFNP GS Y
Sbjct: 264 RRYIATSNANRGKVTVEYVLLDHVNDDMDHAHELAKLMK--GTPCKINLIPFNPYPGSPY 321
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 322 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 360
>gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 162/338 (47%), Gaps = 71/338 (21%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVT---AADGTV 84
P R Q W + G + + + + DL+E + + VT ++DGTV
Sbjct: 19 PFRATQFLKWIYQYGVTDF-----DLMTNIKKDLREKLKEIACIKAPEIVTEQRSSDGTV 73
Query: 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHE 144
K + + D +L+ETV IP E+G R T C+S+QVGCP++C+FC TG GF+RNLS E
Sbjct: 74 KWALDIGDGQLVETVLIP---EEG--RNTLCISTQVGCPVKCAFCRTGASGFNRNLSVSE 128
Query: 145 IVGQV------LAIEEIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRM 195
I+GQV + + + + ++NVV MGMGEP+ N+ +VL+ L D + +R
Sbjct: 129 IIGQVWRAASRVGFSQNEEQKPISNVVMMGMGEPLYNVDAVLKVTEILLNDNAFALSKRR 188
Query: 196 ITISTVGVPNTIKKLA---------------------------SYKLQSTL-AIRS---- 223
+TIST GV I K+A YK+ L ++R+
Sbjct: 189 VTISTSGVAPIIDKIAGKVDVALALSLHAPNDELRDVLVPLNKKYKIDVVLKSVRNYLSK 248
Query: 224 ---------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND + A ELA LL + +NLIPFNP E S+++RP
Sbjct: 249 SNANCGKATIEYVLLDHINDSTDQAEELARLLKD--TPCKINLIPFNPHEQSEFKRPSNS 306
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
V F L H T R TRG D +AACGQL + +
Sbjct: 307 RVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQLAGQVK 344
>gi|424038688|ref|ZP_17777220.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
gi|408893832|gb|EKM30909.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
Length = 375
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 144/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L + T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQL 347
>gi|408371759|ref|ZP_11169519.1| ribosomal RNA large subunit methyltransferase N [Galbibacter sp.
ck-I2-15]
gi|407742812|gb|EKF54399.1| ribosomal RNA large subunit methyltransferase N [Galbibacter sp.
ck-I2-15]
Length = 347
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
L + + + + + + ++DGT+K ++L D ++E+V IP P R TACVSSQV
Sbjct: 58 LLDENFVINHIRVDQMQRSSDGTIKNAVQLHDGLIVESVLIPT-----PSRTTACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C FCAT K RNL+ EI QV+AI+ F ++N+VFMGMGEP++N
Sbjct: 113 GCSLDCKFCATAKLKRMRNLNPDEIYDQVVAIDNESRLYFDRPLSNIVFMGMGEPLMNFN 172
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+VL A + +G + IT+ST GVP I+KLA +++ LA+ D+V ++
Sbjct: 173 NVLLAIDKITDPEGLGMSPKRITVSTSGVPKMIRKLADDQVKFKLAVSLHSAIDEVRTSI 232
Query: 235 ----------ELAELLHEWGRG---------------------------------HHVNL 251
+L E L W + VNL
Sbjct: 233 MPFNATFPLKDLREALEYWYQKTKSRITYEYVVWKGINDRQKDVDALVQFCKFAPSKVNL 292
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI +++ + A+ + L+ + IT ++R++RG D AACGQL N+
Sbjct: 293 IEYNPIGDQMFEQAEESAIQMYQTNLQRNNITVTVRRSRGKDIDAACGQLANK 345
>gi|420421106|ref|ZP_14920189.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4161]
gi|393035159|gb|EJB36206.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4161]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii Q321]
gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
gi|254807166|sp|B6J7Q9.1|RLMN_COXB1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii Q321]
gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
Length = 370
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 150/304 (49%), Gaps = 59/304 (19%)
Query: 53 VPQSFRNDLQEAGWT-VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + FR L EA + V L + R +ADGT K L +L DN IETV IP D K R
Sbjct: 50 LSKPFRQQLSEASFVRVPELALERV--SADGTHKWLFRLADNNKIETVFIP--DRK---R 102
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK--HRVTNVVFMGMG 169
T CVSSQVGC L CSFCATGK GF+RNL+ EI+GQV + K +++TNVV MGMG
Sbjct: 103 GTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVVMMGMG 162
Query: 170 EPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKL----------------- 210
EP+LN ++V+ A + D G + +T+ST GV +++L
Sbjct: 163 EPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPND 222
Query: 211 ----------ASYKLQSTL------------------AIRSAGVNDQVEHAVELAELLHE 242
Y L + + G+ND++ A +L LL +
Sbjct: 223 ALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLAD 282
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+NLIPFN +G+ Y+ + A+ F L T +R+TRG D + ACGQL
Sbjct: 283 V--PCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
Query: 303 NEFQ 306
+F
Sbjct: 341 GQFH 344
>gi|420494682|ref|ZP_14993250.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-16]
gi|393110362|gb|EJC10888.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-16]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLERDFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDKETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|386751775|ref|YP_006224995.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Shi417]
gi|384558033|gb|AFH98501.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Shi417]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|384888271|ref|YP_005762782.1| hypothetical protein HPKB_1325 [Helicobacter pylori 52]
gi|261840101|gb|ACX99866.1| hypothetical protein HPKB_1325 [Helicobacter pylori 52]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 156/334 (46%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESIDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + + D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMRDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493]
gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331]
gi|81628860|sp|Q83C77.1|RLMN_COXBU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829741|sp|A9KFV0.1|RLMN_COXBN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829742|sp|A9NDW2.1|RLMN_COXBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493]
gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331]
Length = 370
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 150/304 (49%), Gaps = 59/304 (19%)
Query: 53 VPQSFRNDLQEAGWT-VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + FR L EA + V L + R +ADGT K L +L DN IETV IP D K R
Sbjct: 50 LSKPFRQQLSEASFVRVPELALERV--SADGTHKWLFRLADNNKIETVFIP--DRK---R 102
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK--HRVTNVVFMGMG 169
T CVSSQVGC L CSFCATGK GF+RNL+ EI+GQV + K +++TNVV MGMG
Sbjct: 103 GTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVVMMGMG 162
Query: 170 EPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKL----------------- 210
EP+LN ++V+ A + D G + +T+ST GV +++L
Sbjct: 163 EPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPND 222
Query: 211 ----------ASYKLQSTL------------------AIRSAGVNDQVEHAVELAELLHE 242
Y L + + G+ND++ A +L LL +
Sbjct: 223 ALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLAD 282
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+NLIPFN +G+ Y+ + A+ F L T +R+TRG D + ACGQL
Sbjct: 283 V--PCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
Query: 303 NEFQ 306
+F
Sbjct: 341 GQFH 344
>gi|420469689|ref|ZP_14968400.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-11]
gi|393086735|gb|EJB87405.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-11]
Length = 357
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLSIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|225011596|ref|ZP_03702034.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
gi|225004099|gb|EEG42071.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-2A]
Length = 358
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 149/295 (50%), Gaps = 54/295 (18%)
Query: 60 DLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 119
+L +A + + + I + DGT+K +KL DN ++E+V IP R TACVSSQ
Sbjct: 66 NLLDAHFEIKHINIDFQQRSTDGTIKNAVKLHDNLVVESVLIPT-----STRTTACVSSQ 120
Query: 120 VGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHR-VTNVVFMGMGEPMLNL 175
VGC L C+FCAT RNL++ EI QV+A+++ ++ R ++N+VFMGMGEP++N
Sbjct: 121 VGCSLDCTFCATAALKRMRNLNADEIYDQVVAMDQQSKLYHQRPLSNIVFMGMGEPLMNY 180
Query: 176 KSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHA 233
+VL A + +G R IT+ST G+P I+K+A K++ LA+ +V
Sbjct: 181 NNVLAAIEKITDTEALGMSPRRITLSTSGIPKLIRKMADDKVKFGLAVSLHSARQEVRER 240
Query: 234 V----------ELAELLHEWGRG---------------------------------HHVN 250
+ EL E L W VN
Sbjct: 241 IMPFAKKFPLTELIESLEYWYAYTKKQITFEYVVWEGVNDLKEDIQALVGLCRRIPSKVN 300
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
+I +NPI+GS ++ + + A+ AL +I+ + R++RG+D AACGQL N+
Sbjct: 301 IIQYNPIDGSSMKQGNQTVIDAYIAALTKARISVTYRRSRGVDIDAACGQLANKI 355
>gi|373955834|ref|ZP_09615794.1| Ribosomal RNA large subunit methyltransferase N [Mucilaginibacter
paludis DSM 18603]
gi|373892434|gb|EHQ28331.1| Ribosomal RNA large subunit methyltransferase N [Mucilaginibacter
paludis DSM 18603]
Length = 350
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 146/303 (48%), Gaps = 65/303 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + R L+E +T+ + + + +AD T+K L D LIE V IP +D R+
Sbjct: 51 LSKELRQKLEEQ-FTINNVKVNTSQFSADKTIKNSFILHDGHLIEGVLIPADD-----RM 104
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEI----FKHRVTNVVFMGM 168
TACVSSQVGC L C FCATG RNL+ EI QV+ I++ + H +TN+V+MGM
Sbjct: 105 TACVSSQVGCSLTCKFCATGYMERKRNLNPDEIYDQVVLIDQQARQNYDHHLTNIVYMGM 164
Query: 169 GEPMLNLKSVLEA-HRCLNKD-VQIGQRMITISTVGVPNTIKKLASYKLQSTLA------ 220
GEP+LN +VL++ R +D + + + IT+ST G+ IKKL +++ LA
Sbjct: 165 GEPLLNYANVLKSIERITAEDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLALSLHAA 224
Query: 221 ---------------------------------------IRSAGVNDQVEHAVELAELLH 241
I ND+++ AVELA
Sbjct: 225 NDAKRNEIMPINEQNSLKALAEALKYYYAKTKNPVTYEYIVFNDFNDEIQDAVELAAFCK 284
Query: 242 EWGRGH---HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAAC 298
H VN+I +NPI + Y + AFA L I T++R++RG D AAC
Sbjct: 285 -----HIPCKVNIIEYNPISFASYTNADVDKIEAFADYLRKQDINTNVRRSRGKDIDAAC 339
Query: 299 GQL 301
GQL
Sbjct: 340 GQL 342
>gi|381187383|ref|ZP_09894947.1| ribosomal RNA large subunit methyltransferase N [Flavobacterium
frigoris PS1]
gi|379650511|gb|EIA09082.1| ribosomal RNA large subunit methyltransferase N [Flavobacterium
frigoris PS1]
Length = 347
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 156/334 (46%), Gaps = 59/334 (17%)
Query: 23 FFFTCPS---RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FF T RG Q W GA ++ + E+ + + + + +
Sbjct: 19 FFVTSGDKSFRGNQVYEWLWSKGAHSFEDMTNISKET--RAMLESNFVINHIKVDTIQRS 76
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT+K ++L D ++E+V IP R TACVSSQVGC L CSFCAT + RN
Sbjct: 77 DDGTIKNAVRLHDGLVVESVLIPTN-----TRTTACVSSQVGCSLDCSFCATARLKRMRN 131
Query: 140 LSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ-- 193
L EI QVLAI++ H ++N+VFMGMGEP++N ++++A + +G
Sbjct: 132 LEPGEIYDQVLAIDKESRLYHNHPLSNIVFMGMGEPLMNYNNMMKAIDMIISPEGLGMSP 191
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEW 243
+ I +ST GVP IKKLA ++ LA+ D++ + +L E L W
Sbjct: 192 KRIMVSTSGVPKMIKKLADDDVKFKLAVSLHSAIDEIRARIMPFSANFPLADLQESLEYW 251
Query: 244 GRGH---------------------------------HVNLIPFNPIEGSDYQRPYKKAV 270
+ VNLI +NPI+ ++Q+ ++A
Sbjct: 252 YKKTKSKISYEYVVWKDINDNKESIDALVKFCKYVPCKVNLIEYNPIDDGEFQQASEEAT 311
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
A+ ALE+ I +R++RG D AACGQL N+
Sbjct: 312 NAYIKALEASGIVVKVRRSRGKDIDAACGQLANK 345
>gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36]
gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36]
Length = 371
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 137/277 (49%), Gaps = 62/277 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +K+ D + ETV IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SADGTIKWALKV-DGQEYETVYIPDGD-----RATLCVSSQVGCALECTFCSTAQQGFNR 129
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG- 192
NL EI+GQV ++ K +TNVV MGMGEP+LN+ +++ A + D G
Sbjct: 130 NLRVSEIIGQVWRASQVIGFNNKKRAITNVVMMGMGEPLLNMTNLVPALNIMLDDYGFGL 189
Query: 193 -QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA---- 220
+R +T+ST GV + KLA Y ++ LA
Sbjct: 190 SKRRVTVSTSGVVPALDKLADSIDVALAISLHASNDTLRDELVPINKKYNIEMLLASVKN 249
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ VND + A ELA LL + +NLIPFNP GSDY +
Sbjct: 250 YIGKSNANRKKVTIEYVLLDHVNDSTDQAHELAHLLKD--TPCKINLIPFNPFPGSDYGK 307
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
P + F L ++ T +IR+TRG D AACGQL
Sbjct: 308 PSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAACGQL 344
>gi|313676931|ref|YP_004054927.1| 23S rRNA m(2)a-2503 methyltransferase [Marivirga tractuosa DSM
4126]
gi|312943629|gb|ADR22819.1| 23S rRNA m(2)A-2503 methyltransferase [Marivirga tractuosa DSM
4126]
Length = 360
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 141/291 (48%), Gaps = 54/291 (18%)
Query: 63 EAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGC 122
+ + + R+ I ++D T+K+ +L D +E V IP E+ R+TACVSSQVGC
Sbjct: 74 DQNYCINRITIADKQLSSDRTIKVAFRLHDGNEVEGVLIPTEN-----RMTACVSSQVGC 128
Query: 123 PLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEI----FKHRVTNVVFMGMGEPMLNLKSV 178
L C FCATG RNL + EI QV+ I+E+ + ++N+V+MGMGEP+LN K++
Sbjct: 129 SLSCKFCATGYLKRMRNLEAAEIYDQVVMIKELAETHYDMPLSNIVYMGMGEPLLNYKNM 188
Query: 179 LEA--HRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV-- 234
+E+ H K + + + IT+ST G+ IKKLA + LA+ ND+ +
Sbjct: 189 MESIEHITSEKGLHMSPKRITVSTAGISKMIKKLADDDAKFNLALSLHAANDEKRSQIMS 248
Query: 235 -----------ELAELLHEWGRGH------------------------------HVNLIP 253
E E H + VNLI
Sbjct: 249 INDSNNLPVLREALEYYHSKTKNRVTFEYCVFNNFNDSLEDAKELWQFTKYVPAKVNLIE 308
Query: 254 FNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+NPI+ +D+ + + FA LE + ++R++RG D AACGQL N+
Sbjct: 309 YNPIDQADFTNTDEDKLDKFAAFLEDRGVIVNVRRSRGKDIDAACGQLANK 359
>gi|389840011|ref|YP_006342095.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
gi|387850487|gb|AFJ98584.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
Length = 388
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI- 221
G +R +T+ST GV + KL Y +++ LA
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 265
Query: 222 -RSAG------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R G VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 266 RRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375137029|ref|YP_004997679.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|427423139|ref|ZP_18913305.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|425700239|gb|EKU69830.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
Length = 411
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 141/285 (49%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ + L+ETV IP ED+ G +R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGEGAGSLVETVLIPAEDKTG-LRKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLA-----IEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ +EE+ + VTNVV MGMGEP+LN +VL + + +
Sbjct: 160 QRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVMMGMGEPLLNYDAVLSSMQIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELVPINKKYPLAQL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVNDQ EHA ++ +LL +NLIPFNP
Sbjct: 280 IAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQMIKLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + +++F L +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|387128396|ref|YP_006297001.1| ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM1]
gi|386275458|gb|AFI85356.1| Ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM1]
Length = 368
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 160/339 (47%), Gaps = 65/339 (19%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R RQ W + + + + +S R L + R+P + + DGT K
Sbjct: 27 PFRARQLLQWIHQYRVTDFDQMSN-LSKSLREKLTQIAEI--RVPELLHEHISTDGTRKW 83
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
+IK++ + IETV IP E G R T CVSSQVGC L C+FC+TG+ GF+RNLS+ EI+
Sbjct: 84 IIKMDGDNSIETVFIP---ENG--RGTLCVSSQVGCALTCTFCSTGQQGFNRNLSAAEII 138
Query: 147 GQVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
Q+ E VTNVV MGMGEP+ N +V+ A + D+ G R +T+
Sbjct: 139 AQLWIANEALGKDPKGNRMVTNVVMMGMGEPLTNYNNVISAMNLMRDDLAYGISWRRLTL 198
Query: 199 STVGVPNTIKKL--------------ASYKLQSTLA------------------------ 220
ST GV I +L A+ KL+S +
Sbjct: 199 STSGVVPMIDRLKEDCHVSLAISLHAANDKLRSEIIPLNDKYPIAELLAACKRYVTGEQL 258
Query: 221 --------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272
+ AG+ND + A +L +L G + +NLIPFNP G+DYQ + ++
Sbjct: 259 RRHITVEYVMLAGINDSEQDARDLIRILK--GLPNKINLIPFNPFPGTDYQCSSRNVIIR 316
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
F L + + ++R+TRG D AACGQL E Q R
Sbjct: 317 FKEQLIAAGLVATVRKTRGDDIVAACGQLAGEVQDKTRR 355
>gi|384891780|ref|YP_005765913.1| Ribosomal RNA large subunit methyl transferase N [Helicobacter
pylori 908]
gi|385224460|ref|YP_005784386.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori 2017]
gi|385232313|ref|YP_005792232.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori 2018]
gi|307638089|gb|ADN80539.1| Ribosomal RNA large subunit methyl transferase N [Helicobacter
pylori 908]
gi|325996690|gb|ADZ52095.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori 2018]
gi|325998282|gb|ADZ50490.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori 2017]
Length = 357
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 158/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKHTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + +V N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKVLNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|206900837|ref|YP_002251150.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
gi|254807170|sp|B5YF42.1|RLMN_DICT6 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|206739940|gb|ACI18998.1| radical SAM enzyme, Cfr family [Dictyoglomus thermophilum H-6-12]
Length = 348
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 154/306 (50%), Gaps = 59/306 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P+ R + E + +P +T T K L++LED IETV I ++ R
Sbjct: 47 LPKGLRQKIAE--YFSFDIPKVVKITGEGNTKKYLLELEDGENIETVLISHKN-----RN 99
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE-EIFK--HRVTNVVFMGMG 169
T CVS QVGC + C FCATG G RNL++HEIVGQ++ I+ E+F+ R++NVV+MGMG
Sbjct: 100 TVCVSVQVGCAIGCKFCATGLVGLRRNLNTHEIVGQIILIQKELFEKGDRISNVVYMGMG 159
Query: 170 EPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAI------ 221
EP+LN +V+++ R +N++ + IG + IT+ST+G+ I +L L+ LAI
Sbjct: 160 EPLLNYDNVVKSIRIINREWGLNIGSKHITLSTIGIVPKIYQLGEEDLKVRLAISLHAPN 219
Query: 222 ---RSAGV------------------------------------NDQVEHAVELAELLHE 242
RS + ND+ EHA+ELA LL
Sbjct: 220 NELRSKIIPINKEYPIEKLLESAFYYAEKTGRRVTFEYVLIKNFNDREEHAIELAGLLK- 278
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ HVNLIP+N + ++ K + F L I ++R + G A CGQLR
Sbjct: 279 -NKPVHVNLIPWNKVPEYPWETSDLKDIFKFKKILSDAGINVTLRISYGSRIKAGCGQLR 337
Query: 303 NEFQKS 308
+ KS
Sbjct: 338 ALYLKS 343
>gi|420478224|ref|ZP_14976877.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-34]
gi|393096998|gb|EJB97592.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-34]
Length = 357
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|326798558|ref|YP_004316377.1| ribosomal RNA large subunit methyltransferase N [Sphingobacterium
sp. 21]
gi|326549322|gb|ADZ77707.1| Ribosomal RNA large subunit methyltransferase N [Sphingobacterium
sp. 21]
Length = 379
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 147/300 (49%), Gaps = 59/300 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + R+ L+E + + + I ++ +AD T+K KL DN +IE V IP P R+
Sbjct: 78 LSKKLRDSLKE-NFIINAVRIDKSQYSADKTIKSTFKLFDNNIIEGVLIPT-----PDRM 131
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----EEIFKHRVTNVVFMGM 168
TACVSSQVGC L C FCATG RNL++ EI QV+ I EE + ++N+V+MGM
Sbjct: 132 TACVSSQVGCSLTCKFCATGYMDRKRNLNADEIYDQVVLINKQAEENYSIPLSNIVYMGM 191
Query: 169 GEPMLNLKSVLEA-HRCLNKD-VQIGQRMITISTVGVPNTIKKLASYKLQSTLA------ 220
GEP+LN +VL++ R D + + + IT+ST G+ IKKL +++ LA
Sbjct: 192 GEPLLNYANVLKSIERITAPDGLNMAAKRITVSTAGIAKMIKKLGDDQVKFNLALSLHAA 251
Query: 221 ---------------------------------------IRSAGVNDQVEHAVELAELLH 241
I ND++E A ELA
Sbjct: 252 NDAKRNEIMPINEQNSLKALAEALKYYFAKTKNPVTYEYIVFNNFNDELEDAAELASFCK 311
Query: 242 EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
VN+I +NPI +D++ + FA L ITT++R++RG D AACGQL
Sbjct: 312 HL--PCKVNIIEYNPIAFADFENAEGDKIDRFAAFLRKRGITTNVRRSRGKDIDAACGQL 369
>gi|217032118|ref|ZP_03437618.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
gi|216946266|gb|EEC24874.1| hypothetical protein HPB128_16g78 [Helicobacter pylori B128]
Length = 365
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 159/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|416218218|ref|ZP_11624766.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|416237493|ref|ZP_11631003.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
Length = 395
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 136/282 (48%), Gaps = 61/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K + ++ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R
Sbjct: 90 SQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCISSQVGCALDCSFCSTGKQGFER 149
Query: 139 NLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
+L+ EI+GQ+ + + ++RVTNVV MGMGEP+LN V+ + + D
Sbjct: 150 DLTPSEIIGQLWVANQSYMENVPPTERENRVTNVVMMGMGEPLLNYDPVVASMSLMLDDH 209
Query: 190 QIG--QRMITISTVGV---------------------PNT------------------IK 208
G +R +T+ST GV PN IK
Sbjct: 210 AFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAPNDELRNELVPINKKYPLKDLIK 269
Query: 209 KLASY---------KLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
SY K + + AGVND EHA +L +LL + +NLIPFNP
Sbjct: 270 AAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKDLPS--KINLIPFNPFPH 327
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + AF+ L +IRQTRG D AACGQL
Sbjct: 328 APYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAACGQL 369
>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|419921561|ref|ZP_14439613.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|432534838|ref|ZP_19771810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|388397512|gb|EIL58490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|431059593|gb|ELD68946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
Length = 384
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|389793875|ref|ZP_10197036.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter fulvus
Jip2]
gi|388433508|gb|EIL90474.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter fulvus
Jip2]
Length = 377
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 157/335 (46%), Gaps = 65/335 (19%)
Query: 24 FFTC----PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA 79
FFT P R Q W + V ++ R L E + +G A
Sbjct: 25 FFTQIGEKPYRAEQVMKW-IYHDLEDNFENMTDVGKALRAKLTEVCY-IGAPKTLLNKVA 82
Query: 80 ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRN 139
DGT K L+ ++ IETV IP P R T CVSSQ+GC L C FC+TG GF+RN
Sbjct: 83 TDGTHKWLLGMDSGNAIETVYIP-----EPTRGTLCVSSQIGCALNCGFCSTGAQGFNRN 137
Query: 140 LSSHEIVGQV-LAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG- 192
LS+ EI+GQV +A +++ R+TNVV MGMGEP+ N +V+ A + D+ G
Sbjct: 138 LSTAEIIGQVWVAAKQLGNVTHQNRRITNVVMMGMGEPLANFDNVVRAMHLMRDDLGFGL 197
Query: 193 -QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI--- 221
+ +T+ST G+ I +L++ Y + LA
Sbjct: 198 ASKRVTLSTAGMVPLIDQLSAQIDVSLAVSLHAANDELRTELMPINKRYPIADLLAACDR 257
Query: 222 ------RSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266
R++ GVNDQ EHA +L +L+ + VNLIPFNP G+ YQR
Sbjct: 258 WIARKPRTSITFEYTLMKGVNDQPEHARQLIKLMRKLPTC-KVNLIPFNPFPGTQYQRSD 316
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ F L + + T +R+TRG D AACGQL
Sbjct: 317 ANDIHDFQTRLLNAGVLTMLRRTRGDDIDAACGQL 351
>gi|420473026|ref|ZP_14971708.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-18]
gi|393086712|gb|EJB87383.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-18]
Length = 357
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|440744297|ref|ZP_20923601.1| hypothetical protein A988_12848 [Pseudomonas syringae BRIP39023]
gi|440374311|gb|ELQ11047.1| hypothetical protein A988_12848 [Pseudomonas syringae BRIP39023]
Length = 382
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 149/305 (48%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I +L+ +
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKYPLKMLLESC 252
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S L + +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSNLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVMDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
E+D A
Sbjct: 371 EADAA 375
>gi|420473218|ref|ZP_14971896.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-19]
gi|393090346|gb|EJB90979.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-19]
Length = 357
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQCKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
Length = 384
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 144/303 (47%), Gaps = 62/303 (20%)
Query: 61 LQEAGWTVGR---LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVS 117
L+E T R LP+ + DGT+K L + D +E V IP ED++G T CVS
Sbjct: 53 LREKLATTARVEALPVLTQHESKDGTIKWLFDVGDGNAVEAVFIP-EDDRG----TLCVS 107
Query: 118 SQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGE 170
SQ GC + C FC+TG GFSRNLS+ EIV Q+ E + ++NVV MGMGE
Sbjct: 108 SQAGCAVGCRFCSTGHQGFSRNLSTGEIVAQLWFAEHFLRKHLKRDERVISNVVMMGMGE 167
Query: 171 PMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------------- 212
P+ N +++ A R + D G +R +T+ST GV I +L +
Sbjct: 168 PLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGTDCAVAMAVSLHAPNDA 227
Query: 213 -----------YKLQSTL---------AIRS---------AGVNDQVEHAVELAELLHEW 243
Y + L A R GVNDQ EHA +L EL+ +
Sbjct: 228 LRDDLVPLNRKYPIAELLEACKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLVELVRKH 287
Query: 244 GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
NLIPFNP S R + VLAFA L + T++R+TRG D AACGQL
Sbjct: 288 DVSCKFNLIPFNPFPASGLLRSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAACGQLAG 347
Query: 304 EFQ 306
+ +
Sbjct: 348 DVK 350
>gi|308183521|ref|YP_003927648.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori PeCan4]
gi|308065706|gb|ADO07598.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori PeCan4]
Length = 357
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDNLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
ANA-3]
gi|205829885|sp|A0KUJ2.1|RLMN_SHESA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3]
Length = 373
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 141/290 (48%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K I + + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 STDGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + +E + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFAKETGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND E A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|157374568|ref|YP_001473168.1| ribosomal RNA large subunit methyltransferase N [Shewanella
sediminis HAW-EB3]
gi|205829886|sp|A8FT67.1|RLMN_SHESH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
Length = 373
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 141/290 (48%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + + +ETV IP ED R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SADGTIKFAINVGQGQEVETVYIPEED-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EI+GQV + +E + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIIGQVWRVANFIGFQKETGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y L+ LA
Sbjct: 191 SLSKRRVTVSTSGVVPALDKLGDALDVALAVSIHAPNDELRDVLVPVNKKYPLEEFLAGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND + A ELA+L+ + +NLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT--PCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|120434720|ref|YP_860407.1| radical SAM protein [Gramella forsetii KT0803]
gi|205829770|sp|A0LY94.1|RLMN_GRAFK RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|117576870|emb|CAL65339.1| radical SAM superfamily protein, UPF0063 [Gramella forsetii KT0803]
Length = 352
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 142/289 (49%), Gaps = 54/289 (18%)
Query: 65 GWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPL 124
+ + + + R ++DGT+K +KL D +E+V IP + R TACVSSQVGC L
Sbjct: 67 NFVINHIRVDRMQRSSDGTIKNAVKLHDALTVESVLIPTKS-----RTTACVSSQVGCSL 121
Query: 125 RCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLE 180
C FCAT K RNL+ EI QV+AI+ F ++N+VFMGMGEP++N +V++
Sbjct: 122 DCQFCATAKLKRMRNLNPDEIYDQVVAIDNESRLYFDRPLSNIVFMGMGEPLMNYNNVMK 181
Query: 181 AHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV---- 234
A + +G + ITIST GVP IKKLA + + LA+ ++V +
Sbjct: 182 AVEKITSPEGLGMSPKRITISTSGVPKMIKKLADDEAKIKLAVSLHSARNEVRTQIMPFN 241
Query: 235 ------ELAELLHEWGRGH---------------------------------HVNLIPFN 255
+L E L W VNLI +N
Sbjct: 242 ETFPLEDLREALEYWYSKTTSRITYEYIVWKDINDTREDAQALVRFCKYVPCKVNLIEYN 301
Query: 256 PIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
PI+ ++Q+ +A + LE + IT ++R++RG D AACGQL N+
Sbjct: 302 PIDDGNFQQAAIEATNMYQDMLERNGITVTVRRSRGKDIDAACGQLANK 350
>gi|37678948|ref|NP_933557.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
YJ016]
gi|81758246|sp|Q7MNF3.1|RLMN_VIBVY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016]
Length = 374
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREVGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELA+L+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
Length = 411
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 140/285 (49%), Gaps = 65/285 (22%)
Query: 79 AADGTVKLLIKLEDN--RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K + ++ D L+ETV IP ED+ G +R T C+SSQVGC L CSFC+TGK GF
Sbjct: 101 SKDGTRKWVFRVGDGAGSLVETVLIPAEDKTG-LRKTLCISSQVGCALDCSFCSTGKQGF 159
Query: 137 SRNLSSHEIVGQVLA-----IEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
R+L+ EI+GQ+ +EE+ + VTNVV MGMGEP+LN +VL + + +
Sbjct: 160 QRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVMMGMGEPLLNYDAVLSSMQIMLD 219
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV I +LA Y L
Sbjct: 220 DFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELVPINKKYPLAQL 279
Query: 219 LA----------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
+A + GVND EHA ++ +LL +NLIPFNP
Sbjct: 280 IAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHPEHAQQMIKLLKNL--PSKINLIPFNP 337
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + +++F L +IRQTRG D AACGQL
Sbjct: 338 FPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|385221397|ref|YP_005782869.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori India7]
gi|317010204|gb|ADU80784.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori India7]
Length = 357
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKEMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLQASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SAKMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|28897379|ref|NP_796984.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus RIMD 2210633]
gi|153838534|ref|ZP_01991201.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
gi|260363554|ref|ZP_05776383.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
gi|260876339|ref|ZP_05888694.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
gi|260898610|ref|ZP_05907106.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
gi|260899290|ref|ZP_05907685.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
gi|81728415|sp|Q87S19.1|RLMN_VIBPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|28805591|dbj|BAC58868.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149748049|gb|EDM58908.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
gi|308086920|gb|EFO36615.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
gi|308092880|gb|EFO42575.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
gi|308106603|gb|EFO44143.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
gi|308113028|gb|EFO50568.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
Length = 375
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND + HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMGHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|393778670|ref|ZP_10366934.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
412 str. F0487]
gi|392611646|gb|EIW94378.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
412 str. F0487]
Length = 351
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 153/326 (46%), Gaps = 56/326 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RG Q W + G T +P++ R L E + + + + + DGT+K
Sbjct: 26 PFRGNQVYEWLWQKGVH-TFEEMTSLPKATREMLSEH-FNINHIKVDVMQRSNDGTIKNA 83
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++L D L+E+V IP + R TACVSSQVGC L CSFCAT + RNL EI
Sbjct: 84 VRLHDGLLVESVLIPTD-----TRTTACVSSQVGCSLNCSFCATARLKRMRNLLPDEIFD 138
Query: 148 QVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTV 201
QV I+E F ++N+VFMGMGEP++N +VL+A + +G + IT+ST
Sbjct: 139 QVKVIDEQSRAFFGRPLSNIVFMGMGEPLMNYNNVLKAIDKITSPEGLGMSPKRITLSTS 198
Query: 202 GVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG----- 246
G+P IKK+A +++ LA+ V + EL E L W +
Sbjct: 199 GIPKLIKKMADDEVKFKLAVSLHSAISSVRTGIMPFNEQFPLEELREALAYWYQKTKNRI 258
Query: 247 ----------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
VNLI +NPI+ +Q+ KA+ + LE
Sbjct: 259 TYEYVVWKGINDQKKDVEALIKFCKFAPSKVNLIEYNPIDDGAFQQADPKALELYQTMLE 318
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
IT ++R +RG D AACGQL N+
Sbjct: 319 EAGITVTVRHSRGKDIDAACGQLANK 344
>gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
gi|341941982|sp|Q8DEZ6.2|RLMN_VIBVU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
Length = 374
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMRVGDQD-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREVGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELA+L+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|416157002|ref|ZP_11604848.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|416225542|ref|ZP_11626890.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|416231838|ref|ZP_11628904.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|416235984|ref|ZP_11630379.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|416242273|ref|ZP_11633309.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|416246881|ref|ZP_11635250.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|416249828|ref|ZP_11636925.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|416255365|ref|ZP_11639202.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|421780199|ref|ZP_16216689.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis BBH18]
gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|407812993|gb|EKF83777.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
Length = 395
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 136/282 (48%), Gaps = 61/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K + ++ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R
Sbjct: 90 SQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCISSQVGCALDCSFCSTGKQGFER 149
Query: 139 NLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
+L+ EI+GQ+ + + ++RVTNVV MGMGEP+LN V+ + + D
Sbjct: 150 DLTPSEIIGQLWVANQSYMENVPPTERENRVTNVVMMGMGEPLLNYDPVVASMSLMLDDH 209
Query: 190 QIG--QRMITISTVGV---------------------PNT------------------IK 208
G +R +T+ST GV PN IK
Sbjct: 210 AFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAPNDELRNELVPINKKYPLKDLIK 269
Query: 209 KLASY---------KLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
SY K + + AGVND EHA +L +LL + +NLIPFNP
Sbjct: 270 AAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKDLPS--KINLIPFNPFPH 327
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + AF+ L +IRQTRG D AACGQL
Sbjct: 328 APYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAACGQL 369
>gi|397597978|gb|EJK57125.1| hypothetical protein THAOC_22868 [Thalassiosira oceanica]
Length = 572
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 154/335 (45%), Gaps = 59/335 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R RQ W + G S +P R L+E VG L + + DGT K K
Sbjct: 83 RARQINNWIFKQGVSDIDDMT-DLPLKLRTLLRERA-IVGSLHLEVEQISRDGTKKRAYK 140
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IE+V +P D R TAC+SSQ GC + C FCATG+ GF+R L+S EI QV
Sbjct: 141 LHDGQMIESVLMPYTDG----RRTACISSQAGCAMGCVFCATGQMGFARQLTSDEIFEQV 196
Query: 150 LAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNT 206
K R++NVV MGMGEP+ N ++V+ A R +N ++ IGQR IT+STVGV
Sbjct: 197 ATFHHELKGKNERLSNVVMMGMGEPLANYRNVIAAIRRMNNELGIGQRKITLSTVGVVPN 256
Query: 207 IKKLASYKLQSTLAI---------RSA--------------------------------- 224
I+KL +Q LA+ RS+
Sbjct: 257 IRKLMDEDIQIRLALSLHCATDEERSSLLPANRRYGGLDELMTTIREYIEVKKMRVTFEW 316
Query: 225 ----GVNDQVEHAVELAELLHEWG---RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
G ND + A L LL G HVNLIP NP G + V F L
Sbjct: 317 ALIEGENDSRDVARTLGHLLKRHGIRPDMAHVNLIPLNPTGGYVGSPSGRNNVERFVDVL 376
Query: 278 ESH-KITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
++ I+ + R RG+D A CGQL++ +K R
Sbjct: 377 QNEFGISATPRMRRGIDIDAGCGQLKSAVKKKEDR 411
>gi|298735612|ref|YP_003728137.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori B8]
gi|298354801|emb|CBI65673.1| Ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori B8]
Length = 357
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 159/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDGETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|340756027|ref|ZP_08692664.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
D12]
gi|421501135|ref|ZP_15948108.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313687351|gb|EFS24186.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
D12]
gi|402266248|gb|EJU15688.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 349
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 146/281 (51%), Gaps = 53/281 (18%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
V+ D T K L +LED IETV + D++ T C+SSQVGCP++C+FCATG+ GF
Sbjct: 73 VSKIDKTEKFLFQLEDGNTIETVLLRHRDQRN----TLCISSQVGCPVKCTFCATGQDGF 128
Query: 137 SRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
RNL EI+ QV IE R +TN+VFMGMGEP++N+ ++++A L+ + + I
Sbjct: 129 VRNLRVSEILNQVYTIERRLNKRGEKLTNLVFMGMGEPLINMDALMKALEILSCEEGICI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQVEHAV---------ELAELLH 241
+R ITIST G+ I+++ K LAI + +N++ + + +L+ +L
Sbjct: 189 SKRKITISTSGIVPAIERILMEKTPVELAISLHSAINEKRDRIIPINKAYPLEDLSAVLL 248
Query: 242 EWGR---------------------------------GHHVNLIPFNPIEGSDYQRPYKK 268
E+ R H VNLIP NP+ + +RP +K
Sbjct: 249 EYQRQTKRRLTFEYILIKDFNVSEGDANALADFAHQFDHIVNLIPCNPVSETGLERPSEK 308
Query: 269 AVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQKS 308
+ F L++ K+ S+RQ +G D ACGQLR +K
Sbjct: 309 KIERFYEYLKNVRKVNVSLRQEKGTDIDGACGQLRQNQRKK 349
>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ATCC BAA-894]
gi|417791222|ref|ZP_12438697.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|424800635|ref|ZP_18226177.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|429116542|ref|ZP_19177460.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|429121143|ref|ZP_19181789.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449307260|ref|YP_007439616.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
gi|205829756|sp|A7MGV3.1|RLMN_CROS8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
gi|333954665|gb|EGL72492.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|423236356|emb|CCK08047.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|426319671|emb|CCK03573.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|426324427|emb|CCK12526.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449097293|gb|AGE85327.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
Length = 388
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI- 221
G +R +T+ST GV + KL Y +++ LA
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 265
Query: 222 -RSAG------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R G VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 266 RRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|420505089|ref|ZP_15003613.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-62]
gi|393154235|gb|EJC54520.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-62]
Length = 357
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDKETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|383329602|ref|YP_005355486.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|389869456|ref|YP_006376879.1| Fe-S-cluster redox protein [Enterococcus faecium DO]
gi|406579734|ref|ZP_11054962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|406582048|ref|ZP_11057181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|406584140|ref|ZP_11059176.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|406589619|ref|ZP_11064049.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410936165|ref|ZP_11368034.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|415899923|ref|ZP_11551718.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|416139196|ref|ZP_11599133.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|424792617|ref|ZP_18218830.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|424797774|ref|ZP_18223326.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|424826294|ref|ZP_18251204.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|424857869|ref|ZP_18281953.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|424868563|ref|ZP_18292305.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|424950906|ref|ZP_18366047.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|424955308|ref|ZP_18370150.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|424958812|ref|ZP_18373437.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|424961262|ref|ZP_18375717.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|424964863|ref|ZP_18378925.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|424967212|ref|ZP_18380920.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|424971640|ref|ZP_18385067.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|424973752|ref|ZP_18387017.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|424977232|ref|ZP_18390264.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|424981352|ref|ZP_18394088.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|424984783|ref|ZP_18397301.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|424989513|ref|ZP_18401777.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|424991169|ref|ZP_18403337.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|424994655|ref|ZP_18406586.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|424999328|ref|ZP_18410955.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|425000596|ref|ZP_18412152.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|425005055|ref|ZP_18416333.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|425008633|ref|ZP_18419703.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|425011933|ref|ZP_18422790.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|425013474|ref|ZP_18424204.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|425017031|ref|ZP_18427567.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|425020688|ref|ZP_18430983.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|425023764|ref|ZP_18433865.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|425035059|ref|ZP_18439911.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|425038929|ref|ZP_18443507.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|425042369|ref|ZP_18446709.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|425045819|ref|ZP_18449888.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|425049029|ref|ZP_18452905.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|425053288|ref|ZP_18456841.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|425058808|ref|ZP_18462183.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|425059772|ref|ZP_18463091.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|427395601|ref|ZP_18888523.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430820558|ref|ZP_19439186.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430823875|ref|ZP_19442444.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430826729|ref|ZP_19444903.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430829314|ref|ZP_19447410.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430832244|ref|ZP_19450291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430845039|ref|ZP_19462935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430847340|ref|ZP_19465179.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430850546|ref|ZP_19468306.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430853708|ref|ZP_19471435.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430856549|ref|ZP_19474235.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430863746|ref|ZP_19480191.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430866956|ref|ZP_19482182.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430924609|ref|ZP_19485396.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430961994|ref|ZP_19487277.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|431012240|ref|ZP_19490031.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|431204832|ref|ZP_19500709.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|431238555|ref|ZP_19503424.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|431260023|ref|ZP_19505529.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|431309281|ref|ZP_19508662.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|431381565|ref|ZP_19511167.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|431451877|ref|ZP_19514057.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|431517056|ref|ZP_19516446.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|431549988|ref|ZP_19519301.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|431682644|ref|ZP_19524607.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|431744636|ref|ZP_19533504.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|431745283|ref|ZP_19534132.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|431749688|ref|ZP_19538425.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|431755622|ref|ZP_19544271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|431760784|ref|ZP_19549378.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|431765743|ref|ZP_19554246.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|431768217|ref|ZP_19556657.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|431771402|ref|ZP_19559786.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|431774199|ref|ZP_19562511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|431777322|ref|ZP_19565576.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|431779992|ref|ZP_19568181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|431783071|ref|ZP_19571195.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|431786532|ref|ZP_19574544.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|447913545|ref|YP_007394957.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|364089102|gb|EHM31819.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|364090753|gb|EHM33298.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|378939296|gb|AFC64368.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|388534705|gb|AFK59897.1| Fe-S-cluster redox enzyme [Enterococcus faecium DO]
gi|402917477|gb|EJX38264.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|402920323|gb|EJX40847.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|402924452|gb|EJX44661.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|402927865|gb|EJX47789.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|402932138|gb|EJX51671.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|402934375|gb|EJX53731.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|402936959|gb|EJX56104.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|402938962|gb|EJX57924.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|402944252|gb|EJX62679.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|402945450|gb|EJX63796.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|402954876|gb|EJX72458.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|402958008|gb|EJX75362.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|402958591|gb|EJX75898.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|402963945|gb|EJX80782.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|402966747|gb|EJX83360.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|402967916|gb|EJX84429.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|402968627|gb|EJX85099.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|402977520|gb|EJX93331.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|402979267|gb|EJX94943.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|402979458|gb|EJX95124.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|402987699|gb|EJY02744.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|402988903|gb|EJY03874.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|402991921|gb|EJY06658.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|402995225|gb|EJY09702.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|403000887|gb|EJY14971.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|403005671|gb|EJY19361.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|403008795|gb|EJY22286.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|403008869|gb|EJY22355.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|403018127|gb|EJY30834.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|403018855|gb|EJY31508.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|403023631|gb|EJY35869.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|403026258|gb|EJY38259.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|403029162|gb|EJY40932.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|403030899|gb|EJY42552.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|403037510|gb|EJY48780.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|403043242|gb|EJY54163.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|404455065|gb|EKA01934.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|404458710|gb|EKA05118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|404464533|gb|EKA10061.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|404470522|gb|EKA15147.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410735406|gb|EKQ77318.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|425723590|gb|EKU86477.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430439433|gb|ELA49785.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430441908|gb|ELA51979.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430444754|gb|ELA54572.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430480235|gb|ELA57423.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430481220|gb|ELA58381.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430495873|gb|ELA71993.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430535414|gb|ELA75822.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430537283|gb|ELA77627.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430540261|gb|ELA80471.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430544309|gb|ELA84347.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430547806|gb|ELA87720.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430551006|gb|ELA90776.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430553808|gb|ELA93489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430555904|gb|ELA95432.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|430559751|gb|ELA99075.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|430571355|gb|ELB10271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|430572256|gb|ELB11118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|430576762|gb|ELB15387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|430579210|gb|ELB17733.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|430581927|gb|ELB20365.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|430585056|gb|ELB23359.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|430585610|gb|ELB23889.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|430590676|gb|ELB28730.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|430598550|gb|ELB36287.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|430605379|gb|ELB42784.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|430610719|gb|ELB47850.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|430611275|gb|ELB48377.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|430616844|gb|ELB53739.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|430623454|gb|ELB60146.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|430627682|gb|ELB64165.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|430629601|gb|ELB65997.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|430633466|gb|ELB69632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|430634601|gb|ELB70719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|430639434|gb|ELB75307.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|430641073|gb|ELB76893.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|430645425|gb|ELB80940.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|430646093|gb|ELB81588.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|445189254|gb|AGE30896.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
Length = 355
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 148/285 (51%), Gaps = 58/285 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 74 ASDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNIGCTFCASGLLKKNR 128
Query: 139 NLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
+L++ EIV Q++ ++ F RV++VV MG+GEP N +V++ +N K + I
Sbjct: 129 DLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS----------- 223
G R IT+ST G+ + IK+ A+ LQ LAI RS
Sbjct: 189 GARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVD 248
Query: 224 -----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND+ EHA +LA+LL + + +VNLIP+NP+ D Y R
Sbjct: 249 EYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
K VL F L+ + + IR+ G D AACGQLR++ K +
Sbjct: 309 PKADVLRFYDVLKKNGVNCVIRKEHGTDIDAACGQLRSKQMKKTV 353
>gi|256830852|ref|YP_003159580.1| radical SAM protein [Desulfomicrobium baculatum DSM 4028]
gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 166/358 (46%), Gaps = 67/358 (18%)
Query: 11 PFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGR 70
P L A Q + F R RQ W R G + + + FR L W +
Sbjct: 10 PELEEAVQAMGHQSF----RARQLWQWLWRKGVREFSAMTN-LARDFREQLMRE-WALDW 63
Query: 71 LPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
+ T++DGTVKLL++L D L+ETV IP ++ R T C+S Q+GCP+ C+FC+
Sbjct: 64 PEVHEVQTSSDGTVKLLLRLADGALVETVLIPDKE-----RYTQCLSCQIGCPMGCTFCS 118
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCL 185
TG GFSRN++ EI QVL + + V N+V+MGMGEP+ N V + + L
Sbjct: 119 TGLMGFSRNMTGGEIAAQVLVARDYLRAHGLGDEVKNLVYMGMGEPLTNWDEVRRSLQIL 178
Query: 186 N--KDVQIGQRMITISTVGVPNTIKKL---------------------------ASYKLQ 216
+ + ++ +R IT+ST + + A + ++
Sbjct: 179 SNAEGLEFSRRRITLSTCAIKGKMDVFGIEGLALPAISLHAPTQEIRESLMPGAARWPIE 238
Query: 217 STLA-----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
+A I GVND ++HA +L LL +NLI +NP G
Sbjct: 239 ELIAALQGMELKARERVTIEYILIKGVNDSLQHARQLVRLLSHL--KCKINLIAYNPGPG 296
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNS 317
+Y P VLAF L T ++R+++G D +AACGQL+ E Q R++S+ S
Sbjct: 297 IEYAAPAPGDVLAFEELLRKKGFTVTLRKSKGQDIAAACGQLKTEAQG---RMNSTTS 351
>gi|444375424|ref|ZP_21174716.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori A45]
gi|443620057|gb|ELT80511.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori A45]
Length = 357
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|431741675|ref|ZP_19530578.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
gi|430601407|gb|ELB39013.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
Length = 355
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 148/282 (52%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 74 ASDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNIGCTFCASGLLKKNR 128
Query: 139 NLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
+L++ EIV Q++ ++ F RV++VV MG+GEP N +V++ +N K + I
Sbjct: 129 DLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS----------- 223
G R IT+ST G+ + IK+ A+ LQ LAI RS
Sbjct: 189 GARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVD 248
Query: 224 -----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND+ EHA +LA+LL + + +VNLIP+NP+ D Y R
Sbjct: 249 EYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSERDQYSRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K VL F L+ + + IR+ G D +AACGQLR++ K
Sbjct: 309 PKADVLRFYDVLKKNGVNCVIRKEHGTDINAACGQLRSKQMK 350
>gi|429081719|ref|ZP_19144819.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
gi|426549611|emb|CCJ70860.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
Length = 388
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI- 221
G +R +T+ST GV + KL Y +++ LA
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 265
Query: 222 -RSAG------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R G VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 266 RRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|420496666|ref|ZP_14995227.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-25]
gi|420528698|ref|ZP_15027088.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-25c]
gi|420528859|ref|ZP_15027247.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-25d]
gi|393114363|gb|EJC14878.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-25]
gi|393132297|gb|EJC32718.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-25c]
gi|393137973|gb|EJC38355.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-25d]
Length = 357
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 345
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 149/322 (46%), Gaps = 58/322 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q A W + K+ + ++ R L E + L + + + DGT K L +
Sbjct: 25 RAKQIAQW-IYKKRVKSFDEMTNISKAARKVLSENA-KIDVLKLVKVEKSMDGTKKYLFE 82
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
LED +E+V IP +D T CVS+QVGCP+ C FC T K GF+RNL++ EIV Q
Sbjct: 83 LEDGNRVESVFIPEKDWN-----TLCVSTQVGCPVGCKFCLTAKDGFTRNLTAAEIVDQY 137
Query: 150 LAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPN 205
+ ++ R++NVVFMGMGEP LN ++V +A + + + R ITISTVGV
Sbjct: 138 IHVQRDVGEDKRISNVVFMGMGEPFLNFENVKKAVEIMTDKNMLDLSTRKITISTVGVVP 197
Query: 206 TIKKLASYKLQSTLAIR------------------------------------------- 222
I ++A + LAI
Sbjct: 198 GIDRMAKEMNKVKLAISLHATTDEVREKIVPLNRKYPISEIMAALRRYPADNIRRIMIEY 257
Query: 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
GVND VE A L +L+ G VNLIPFN G+ ++ K+ F L H
Sbjct: 258 VMLEGVNDSVEDAKRLVKLVK--GIPVKVNLIPFNSYPGAPFKPSSKEQTEKFQKVLWDH 315
Query: 281 KITTSIRQTRGLDASAACGQLR 302
I IR +RG D SAACG LR
Sbjct: 316 NIAAFIRDSRGQDISAACGMLR 337
>gi|125973091|ref|YP_001037001.1| ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum ATCC 27405]
gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|385779008|ref|YP_005688173.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|419721503|ref|ZP_14248666.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
gi|419725127|ref|ZP_14252180.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|205829739|sp|A3DCX9.1|RLMN_CLOTH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|125713316|gb|ABN51808.1| radical SAM enzyme, Cfr family [Clostridium thermocellum ATCC
27405]
gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|380771448|gb|EIC05315.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|380782443|gb|EIC12078.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
Length = 349
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 154/298 (51%), Gaps = 56/298 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRT-VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + R L+E + + RL + + V+ DGT+K L KL D +IE+V +
Sbjct: 49 LSKDLREKLKERAY-INRLEVIKKFVSKIDGTIKYLFKLNDGNIIESVLMQY-----LHG 102
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
+AC+SSQVGC + C FCA+ GF RNL+ E++ Q+L I+ K+R+ NVV MG+GEP
Sbjct: 103 YSACISSQVGCKMGCKFCASTGVGFVRNLTPGEMLDQILTIQNDTKNRIGNVVIMGIGEP 162
Query: 172 MLNLKSVLEAHRCLN-KD-VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------- 222
+ N ++V++ R +N KD + +G R I++ST G+ I +LA K+ TL+I
Sbjct: 163 LDNYENVVKFLRLVNHKDGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISLHAPNDE 222
Query: 223 --------------------------------------SAGVNDQVEHAVELAELLHEWG 244
G+ND E+A+ELA+ + G
Sbjct: 223 IREKIMPINKRYSIDKIIEACKIYTETTNRRITFEYAMIDGLNDSKENALELAKRIR--G 280
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
HVNLIP N + + ++R ++ + AF LE + T++R+ G D +AACGQLR
Sbjct: 281 MLCHVNLIPVNTVSDTGFKRSSREKITAFKEILERFGVETTVRRELGSDINAACGQLR 338
>gi|420500220|ref|ZP_14998766.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-30]
gi|393151987|gb|EJC52288.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-30]
Length = 357
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNSLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|430840529|ref|ZP_19458453.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
gi|430495016|gb|ELA71232.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
Length = 355
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 148/282 (52%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 74 ASDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNIGCTFCASGLLKKNR 128
Query: 139 NLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
+L++ EIV Q++ ++ F RV++VV MG+GEP N +V++ +N K + I
Sbjct: 129 DLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS----------- 223
G R IT+ST G+ + IK+ A+ LQ LAI RS
Sbjct: 189 GARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVD 248
Query: 224 -----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND+ EHA +LA+LL + + +VNLIP+NP+ D Y R
Sbjct: 249 EYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K VL F L+ + + IR+ G D +AACGQLR++ K
Sbjct: 309 PKADVLRFYDVLKKNGVNCVIRKEHGTDINAACGQLRSKQMK 350
>gi|420460903|ref|ZP_14959698.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-27]
gi|393074477|gb|EJB75236.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-27]
Length = 357
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
pealeana ATCC 700345]
gi|205829883|sp|A8H242.1|RLMN_SHEPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
Length = 373
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 140/290 (48%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K I + D + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 SVDGTIKFAINVGDGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + + + +TNVV MGMGEP+LNLK+V+ A + D
Sbjct: 131 NLTVAEIVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPLLNLKNVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y L+ L
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIHAPNDELRDVLVPVNKKYPLEEFLGGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND + A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
gi|205829755|sp|A4WD95.1|RLMN_ENT38 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
Length = 388
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 137/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + D R +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SADGTIKWAIAVGDQR-VETVYIPEED-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPVNKKYNIETFLAAV 265
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND+ +HA +LAELL + +NLIP+NP G+ Y
Sbjct: 266 RRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLAELLKD--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L + TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQL 362
>gi|429091189|ref|ZP_19153877.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
gi|429097418|ref|ZP_19159524.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426283758|emb|CCJ85637.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426744313|emb|CCJ79990.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
Length = 388
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI- 221
G +R +T+ST GV + KL Y +++ LA
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 265
Query: 222 -RSAG------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R G VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 266 RRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|384890020|ref|YP_005764322.1| radical SAM enzyme, Cfr family [Helicobacter pylori v225d]
gi|297380586|gb|ADI35473.1| radical SAM enzyme, Cfr family [Helicobacter pylori v225d]
Length = 357
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDGETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQHKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|197336065|ref|YP_002155383.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
MJ11]
gi|254807222|sp|B5FAW9.1|RLMN_VIBFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
Length = 372
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 143/280 (51%), Gaps = 66/280 (23%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPDGD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV-- 189
NL EIVGQ+ + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA---------------- 224
+ +R +T+ST GV + + ++ K+ LAI RS
Sbjct: 191 ALSKRRVTVSTSGVVSGLDQMTG-KIDVALAISLHAPTDELRSQIMPINDRWDIDAFLAS 249
Query: 225 -----------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
VND ++HA +LAELL + +NLIPFNP GS
Sbjct: 250 VRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKD--TPAKINLIPFNPYPGSP 307
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y++P + F L + T +IR+TRG D AACGQL
Sbjct: 308 YKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQL 347
>gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter
uraniireducens Rf4]
gi|205829769|sp|A5GEC2.1|RLMN_GEOUR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens
Rf4]
Length = 343
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 144/302 (47%), Gaps = 56/302 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + FR +L++ W + L +ADGT K L +L D +E+V IP ED R
Sbjct: 49 LSKDFRQELEKTAW-ISNLDAEAVEASADGTKKYLFRLADGNAVESVLIPDED-----RT 102
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
T C+SSQVGC + C FC TG +RNL++ EIV QV A++ + V N+VFMGMGEP+
Sbjct: 103 TLCISSQVGCAMGCEFCLTGTFKLTRNLTTAEIVNQVCAVKR--QEPVRNIVFMGMGEPL 160
Query: 173 LNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLAS------------------ 212
NLK+V+ A + L Q R +T+ST G+ + +L +
Sbjct: 161 ANLKNVVGALKILTDPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSLNATTDEVR 220
Query: 213 ---------YKLQSTLAIRSA-----------------GVNDQVEHAVELAELLHEWGRG 246
Y L+ LA A GVND ++ A L L+
Sbjct: 221 DRIMPINRRYPLKELLAACKAFPLPSRRWITIEYVMIRGVNDSLDDAKRLVRLISNI--P 278
Query: 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
VNLIPFN +G +Q P + ++ F L +T R +RG D SAACGQL+
Sbjct: 279 SKVNLIPFNEHDGCTFQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACGQLKGRLD 338
Query: 307 KS 308
K+
Sbjct: 339 KA 340
>gi|421715858|ref|ZP_16155170.1| 23S rRNA methyltransferase [Helicobacter pylori R037c]
gi|407221756|gb|EKE91559.1| 23S rRNA methyltransferase [Helicobacter pylori R037c]
Length = 357
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDAETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|410089050|ref|ZP_11285679.1| hypothetical protein AAI_00450 [Pseudomonas viridiflava UASWS0038]
gi|409763709|gb|EKN48663.1| hypothetical protein AAI_00450 [Pseudomonas viridiflava UASWS0038]
Length = 382
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 138/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++E +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVESGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I +L+ +
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S L + +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 RRYMSNLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|291522861|emb|CBK81154.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus catus GD/7]
Length = 352
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 149/326 (45%), Gaps = 57/326 (17%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
R +Q W HVR S + + R L E + + V+A DGT K L
Sbjct: 29 RAKQIYEWMHVRLADSFDE--MTNLSKDLRQKLSEQCVLTHLEMVEKYVSAIDGTAKYLF 86
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
KL D+R+IE+V + + + C+SSQVGC + C FCA+ GG R + + E++ +
Sbjct: 87 KLSDDRIIESVLMHYKHGN-----SVCISSQVGCRMGCRFCASTLGGLERQMLASEMLDE 141
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNT 206
+ I++ RV+NVV MG GEP+ N +++ L + I QR +T+ST G+
Sbjct: 142 IYQIQKDSGERVSNVVVMGTGEPLDNYDALVRMIDILTHAPGLDISQRNVTVSTCGLVPK 201
Query: 207 IKKLASYKLQSTLAIR-------------------------------------------- 222
I +LA KLQ TLAI
Sbjct: 202 IYELADLKLQITLAISLHAVNDEKRRELMPIANTYSIEEILKACRYYYSQTNRRITFEYS 261
Query: 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
GVND E A LA LL G H+NLIP NPIE Y++ AVL F LE +
Sbjct: 262 LVKGVNDSREDAKALAALLE--GINCHINLIPVNPIEERSYRQTEADAVLKFKNMLEKYG 319
Query: 282 ITTSIRQTRGLDASAACGQLRNEFQK 307
+IR+ G D AACGQLR ++ +
Sbjct: 320 RNVTIRREMGRDIQAACGQLRKKYME 345
>gi|254779939|ref|YP_003058046.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori B38]
gi|254001852|emb|CAX30102.1| Conserved hypothetical protein [Helicobacter pylori B38]
Length = 357
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDAETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|21674009|ref|NP_662074.1| ribosomal RNA large subunit methyltransferase N [Chlorobium tepidum
TLS]
gi|81791215|sp|Q8KD71.1|RLMN_CHLTE RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|21647156|gb|AAM72416.1| florfenicol resistance protein, putative [Chlorobium tepidum TLS]
Length = 374
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 143/278 (51%), Gaps = 59/278 (21%)
Query: 76 TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGG 135
++ + T K LIKLEDN L+E+V IP E+ R+TAC+SSQ+GCPLRC+FCATG G
Sbjct: 98 SLVTGNPTAKFLIKLEDNELVESVLIPSEE-----RITACISSQIGCPLRCTFCATGHMG 152
Query: 136 FSRNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSVLEAHRCLN-KDVQ 190
F RNL++ EI QV +E+ + R +TN+VFMGMGEP+LNL +VLE+ L KD Q
Sbjct: 153 FRRNLTASEITDQVFLLEKEAQKRHWRGLTNIVFMGMGEPLLNLDNVLESIGTLTEKDYQ 212
Query: 191 --IGQRMITISTVGVPNTIKKLASYKLQSTLAI--RSA---------------------- 224
I +R ITISTVG+P + ++A L++ LAI SA
Sbjct: 213 FSISERKITISTVGLPVEMDRIARSGLKTKLAISLHSADQLIRERMMPIAADITLDKLAK 272
Query: 225 ---------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
G+ND E A +L +NLI +N I ++
Sbjct: 273 AINSYNSVTSQPVTLVYMLLEGINDSPEDARKLVRFAKRV--LCKINLIDYNSIVTLKFK 330
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ F L + ++R+++G +AACGQL
Sbjct: 331 PGCSSSKTMFIQQLLDAGLLVTVRKSQGATINAACGQL 368
>gi|430835133|ref|ZP_19453129.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430836828|ref|ZP_19454805.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430839860|ref|ZP_19457797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430859356|ref|ZP_19476968.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
gi|430484562|gb|ELA61536.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430488151|gb|ELA64844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430490309|gb|ELA66841.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430543717|gb|ELA83772.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
Length = 355
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 147/282 (52%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 74 ASDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNIGCTFCASGLLKKNR 128
Query: 139 NLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
+L++ EIV Q++ ++ F RV++VV MG+GEP N +V++ +N K + I
Sbjct: 129 DLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS----------- 223
G R IT+ST G+ + IK+ A+ LQ LAI RS
Sbjct: 189 GARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVD 248
Query: 224 -----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND+ EHA +LA+LL + + +VNLIP+NP+ D Y R
Sbjct: 249 EYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K VL F L+ + + IR+ G D AACGQLR++ K
Sbjct: 309 PKADVLRFYDVLKKNGVNCVIRKEHGTDIDAACGQLRSKQMK 350
>gi|421714147|ref|ZP_16153471.1| 23S rRNA methyltransferase [Helicobacter pylori R32b]
gi|407213460|gb|EKE83317.1| 23S rRNA methyltransferase [Helicobacter pylori R32b]
Length = 357
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|188528191|ref|YP_001910878.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Shi470]
gi|205829774|sp|B2UVG6.1|RLMN_HELPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|188144431|gb|ACD48848.1| hypothetical protein HPSH_07275 [Helicobacter pylori Shi470]
Length = 357
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADEIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|109946741|ref|YP_663969.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
acinonychis str. Sheeba]
gi|123362803|sp|Q17ZF6.1|RLMN_HELAH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|109713962|emb|CAJ98970.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 353
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 156/334 (46%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E + + + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIASLEQEFVLRTIEITHVSHSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVFLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAEKNLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND + A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKNLNDSLNCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|425431887|ref|ZP_18812467.1| 23S rRNA methyltransferase [Helicobacter pylori GAM100Ai]
gi|410715550|gb|EKQ72965.1| 23S rRNA methyltransferase [Helicobacter pylori GAM100Ai]
Length = 357
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNDLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|408480037|ref|ZP_11186256.1| hypothetical protein PsR81_05719 [Pseudomonas sp. R81]
Length = 382
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 138/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVISAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I +LA +
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ +TL + +ND+VEHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 QRYMATLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|420439450|ref|ZP_14938414.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-29]
gi|393053957|gb|EJB54896.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-29]
Length = 357
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQHKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|114562291|ref|YP_749804.1| ribosomal RNA large subunit methyltransferase N [Shewanella
frigidimarina NCIMB 400]
gi|122300423|sp|Q085U9.1|RLMN_SHEFN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina
NCIMB 400]
Length = 373
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 139/288 (48%), Gaps = 63/288 (21%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGT+K I + + +ETV IP ED R T CVSSQVGC L C+FC+TG+ GF+RNL
Sbjct: 78 DGTIKFAINVGQGQEVETVYIPEED-----RATLCVSSQVGCALECTFCSTGQQGFNRNL 132
Query: 141 SSHEIVGQVLAIEEIFK-HR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+ EI+GQV + + H+ ++NVV MGMGEP+LNL +V+ A + D +
Sbjct: 133 TVSEIIGQVWRVSQFLGFHKDTGDRPISNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSL 192
Query: 192 GQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA---- 220
+R +T+ST GV + KL Y LQ LA
Sbjct: 193 SKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAPNDELRDVLVPVNKKYPLQEFLAGIRR 252
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ +ND + A ELA L+ + +NLIPFNP GS Y R
Sbjct: 253 YLEKSNANRGRVTVEYVMLDHINDSTDQAHELAILMKDT--PCKINLIPFNPYPGSPYGR 310
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
+ F+ L H +T +R+TRG D AACGQL + + R+
Sbjct: 311 SSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|59711233|ref|YP_204009.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
ES114]
gi|423685341|ref|ZP_17660149.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
gi|75354452|sp|Q5E775.1|RLMN_VIBF1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
gi|371495253|gb|EHN70849.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
Length = 372
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 143/280 (51%), Gaps = 66/280 (23%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +K+ D +ETV IP D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMKVGDQD-VETVYIPDGD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV-- 189
NL EIVGQ+ + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIVGQIWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA---------------- 224
+ +R +T+ST GV + + ++ K+ LAI RS
Sbjct: 191 ALSKRRVTVSTSGVVSGLDQMTG-KIDVALAISLHAPTDELRSQIMPINDRWDIDAFLAS 249
Query: 225 -----------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
VND ++HA +LAELL + +NLIPFNP GS
Sbjct: 250 VRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKD--TPAKINLIPFNPYPGSP 307
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y++P + F L + T +IR+TRG D AACGQL
Sbjct: 308 YKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQL 347
>gi|410633396|ref|ZP_11344042.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola arctica
BSs20135]
gi|410147111|dbj|GAC20909.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola arctica
BSs20135]
Length = 381
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 157/350 (44%), Gaps = 65/350 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + G + + + ++ R LQ A + I A+DGT+K
Sbjct: 34 PFRAEQIMKWIYQQGVADFEQMTN-LNKALRTKLQ-AKCEIKAPEIAYQQNASDGTIKFA 91
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+KLE + +ETV IP D R T CVSSQVGC L C+FC+T + GF+RNL EI+G
Sbjct: 92 LKLEGGQEVETVWIPDGD-----RATLCVSSQVGCALECTFCSTAQQGFNRNLKVSEIIG 146
Query: 148 QVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITI 198
QV + + K +TNVV MGMGEP+LN+K+V+ A + D+ G +R +T+
Sbjct: 147 QVWRVATTIGLNNDTAKRPITNVVMMGMGEPLLNVKNVVPAMELMMDDLAFGLSKRRVTL 206
Query: 199 STVGVPNTIKKLAS---------------------------YKLQSTLA----------- 220
ST GV + L Y L+ LA
Sbjct: 207 STSGVVPALDMLGDQIDVALAISIHAPDNALRDVLVPVNKKYPLEVFLASVRRYLAKSNA 266
Query: 221 ---------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
+ G+ND + A LA+++ + +NLIPFNP GS Y +
Sbjct: 267 NQGKVTVEYVMLNGINDSTDQAHALAKVMAD--TPCKINLIPFNPYPGSPYTCSSNSRID 324
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSES 321
FA L + + +R+TRG D AACGQL E RI ES
Sbjct: 325 RFAKVLMEYGLIVVVRRTRGEDIDAACGQLVGEVVDRTKRILKKKLKGES 374
>gi|420446127|ref|ZP_14945029.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-42]
gi|393059671|gb|EJB60548.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-42]
Length = 357
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|223940814|ref|ZP_03632646.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
gi|223890519|gb|EEF57048.1| radical SAM enzyme, Cfr family [bacterium Ellin514]
Length = 378
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 150/323 (46%), Gaps = 77/323 (23%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE---KGP 109
+P+ R LQ+ +T+ L + R + D T K L KL D +IE+V IP +
Sbjct: 48 LPKGLREVLQKE-FTLQTLELVRRQGSRDTTQKFLWKLNDGAMIESVLIPANPALYGEAS 106
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE---------------- 153
R T CVS+QVGC C FCA+G G+ RNL EIV Q+LAIE
Sbjct: 107 DRHTLCVSTQVGCAYGCKFCASGLEGWKRNLRVEEIVEQILAIERWNAAEEAKGSKPPEA 166
Query: 154 -------EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVP 204
E+ + + N+V MGMGEP+ N +++L+A R LN IG R ITIST G+
Sbjct: 167 NPKPKTTEVTRF-INNLVIMGMGEPLANYENLLKALRILNAPWGGGIGARKITISTSGLA 225
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
I+KLA LQ LAI
Sbjct: 226 PQIRKLADDPLQFRLAISLHGATDEVRNKIMPVNKKYPLKELTAACEYYQQKKDRMITFE 285
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
AGVND ++ LA+L H VNLIP+N +E ++RP + A AF LE
Sbjct: 286 YILIAGVNDGLDQVKPLAQLAHRL--NAKVNLIPYNKVEDLTWERPTEAAQEAFLATLEK 343
Query: 280 HKITTSIRQTRGLDASAACGQLR 302
++ ++R+ +G D AACGQLR
Sbjct: 344 ERVVATLRREKGHDIDAACGQLR 366
>gi|147675306|ref|YP_001216242.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
O395]
gi|227117131|ref|YP_002819027.1| hypothetical protein VC395_0774 [Vibrio cholerae O395]
gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
gi|205829925|sp|A5F3F8.1|RLMN_VIBC3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
Length = 373
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 146/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTLA--------------- 220
G +R +T+ST GV + ++++ + KL+S +
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND EHA ELAELL +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKR--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T +IR+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 410
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 109/310 (35%), Positives = 146/310 (47%), Gaps = 65/310 (20%)
Query: 60 DLQEAGWTVGRLP---IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACV 116
DL+E V +P I + DGT K +I+L++ +ETV IP + +G T CV
Sbjct: 56 DLREKLKAVAVIPAPAISYENISKDGTRKWVIRLDNGNAVETVFIP-DGNRG----TLCV 110
Query: 117 SSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF------KHR-VTNVVFMGMG 169
SSQVGC L CSFC+TGK GF R+L++ EI+ Q+ F HR +TNVV MGMG
Sbjct: 111 SSQVGCSLDCSFCSTGKQGFQRDLTAAEIIAQLWVANRSFGVPDNKGHRNITNVVMMGMG 170
Query: 170 EPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGV---------------------PNT 206
EP+LNL +V+ A + D+ G ++ +T+ST GV PN
Sbjct: 171 EPLLNLDNVVSAMEIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSLHAPND 230
Query: 207 -------------------------IKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLH 241
+ K + + + G+ND HA EL ELL
Sbjct: 231 TLRDELMPINRKYPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAELVELLR 290
Query: 242 EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ +NLIPFNP + Y+RP V AF L T+IR TRG D AACGQL
Sbjct: 291 DV--PSKINLIPFNPFPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAACGQL 348
Query: 302 RNEFQKSPLR 311
+ Q R
Sbjct: 349 VGQVQDRTRR 358
>gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 373
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 147/279 (52%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K +++ D +ETV IP ED R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SADGTIKWAMRVGDQD-VETVYIPDED-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A +EI + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAKEIGVQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLA--------------SYKLQSTL--------------AI 221
G +R +T+ST GV + ++++ + +L+S + A+
Sbjct: 191 GLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINNRWDIETFLDAV 250
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND +EHA +LA++L + +NLIPFNP GS Y
Sbjct: 251 RRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKD--TPAKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L + T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQL 347
>gi|78045218|ref|YP_360312.1| radical SAM protein [Carboxydothermus hydrogenoformans Z-2901]
gi|123770585|sp|Q3AC22.1|RLMN_CARHZ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|77997333|gb|ABB16232.1| radical SAM enzyme, Cfr family [Carboxydothermus hydrogenoformans
Z-2901]
Length = 342
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 158/324 (48%), Gaps = 57/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLI 88
R +Q W + G + +P R L+E + + L I + + DG ++K L+
Sbjct: 25 RLKQINEWIFKHGELDFNKMTN-LPVRLREKLKE-NFLLPSLKIIHSKKSRDGQSIKYLL 82
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
KL+DN IE V + K T C+S+QVGC + C FCATG GGFSRNL++ E++ Q
Sbjct: 83 KLKDNLGIEAVLL-----KYRYGNTVCLSTQVGCKMGCKFCATGLGGFSRNLTAGEMIEQ 137
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN-KD-VQIGQRMITISTVGVPNT 206
+L ++ ++T VV MG GEP+ N VL+ R +N KD + I R IT+ST G+
Sbjct: 138 ILVLKASSSEKITRVVLMGSGEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQ 197
Query: 207 IKKLASYKLQSTLAIR-------------------------------------------- 222
IK LA KL TLAI
Sbjct: 198 IKALAEEKLPVTLAISLHAPDDALRNELIPINKRWGLAELLDAAWYFIDKTGRRVSFEYA 257
Query: 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
VND VEHA++LA+LL + HVNLIP+N IE +++ P + + F L+
Sbjct: 258 LIENVNDTVEHALKLAQLLQR--KLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAG 315
Query: 282 ITTSIRQTRGLDASAACGQLRNEF 305
I ++R+ G + ACGQL+ ++
Sbjct: 316 IPVTVRRELGDEIDGACGQLKAKY 339
>gi|420489843|ref|ZP_14988434.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-11]
gi|420523473|ref|ZP_15021891.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-11b]
gi|393104736|gb|EJC05291.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-11]
gi|393125822|gb|EJC26274.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-11b]
Length = 357
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|421863302|ref|ZP_16295001.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 364
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 160/337 (47%), Gaps = 62/337 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W ++GA + +S R+ L E +G + + ++DGT K L
Sbjct: 24 PFRAKQVMRWIHQSGAQNFDEMT-DLAKSLRHKLNEQA-NIGIPKLMMSQESSDGTRKWL 81
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ + +ETV IP E E+G T C+SSQVGC L C+FC+TG+ GF+RNL++ EI+G
Sbjct: 82 LDVGTGNGVETVFIP-ESERG----TLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIG 136
Query: 148 QV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIS 199
Q+ + + + ++NVV MGMGEPM N +V+ A + D G +R +T+S
Sbjct: 137 QLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDYGYGLSRRRVTVS 196
Query: 200 TVGVPNTIKKL---------------------------ASYKLQSTLA------------ 220
T G+ + + +L Y L+ +A
Sbjct: 197 TSGMVSQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRD 256
Query: 221 ------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
+ GVND+ +HA EL L+ + NLIPFNP S Y+R K+ + F
Sbjct: 257 FITFEYVMLDGVNDKAQHAHELINLVKD--VPCKFNLIPFNPFPNSGYERSSKENIRVFK 314
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
L+ ++R+TRG D AACGQL + Q R
Sbjct: 315 DILQQAGFVVTVRKTRGDDIDAACGQLAGQVQDKTRR 351
>gi|398965245|ref|ZP_10680872.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM30]
gi|398147360|gb|EJM36070.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM30]
Length = 382
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 150/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
SA VND++EHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 QRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKDI--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVLDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
+SD+A
Sbjct: 371 DSDLA 375
>gi|420483169|ref|ZP_14981801.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-2]
gi|420513592|ref|ZP_15012070.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-2b]
gi|393096898|gb|EJB97494.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-2]
gi|393156009|gb|EJC56280.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-2b]
Length = 357
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SAKMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|420417741|ref|ZP_14916836.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4044]
gi|393030922|gb|EJB31995.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4044]
Length = 357
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKINGETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPRLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L S + +IR+++ LD AACGQLR
Sbjct: 316 SARIFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|358067540|ref|ZP_09154018.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
gi|356694193|gb|EHI55856.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
Length = 344
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 143/301 (47%), Gaps = 54/301 (17%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
VP + L + + G + + DGT K L KL+D +IE+V + +
Sbjct: 47 VPSELKKKLAKEYYISGLKEVMFKESPIDGTRKYLFKLDDGNIIESVFMRYKHGN----- 101
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
+ C+SSQVGC + C+FCA+ GG RNL++ E++ QV +I R++N+V MG+GEPM
Sbjct: 102 SVCISSQVGCRMGCTFCASTLGGLVRNLTNAEMLAQVYSIGRSVGERISNIVIMGVGEPM 161
Query: 173 LNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------- 222
N ++++ ++ + I QR ITIST G+ IKKLA KL TLA+
Sbjct: 162 DNYENIVSFVHMISDIHGLNISQRNITISTCGIVPQIKKLADEKLSVTLALSLHAPDNIT 221
Query: 223 -------------------------------------SAGVNDQVEHAVELAELLHEWGR 245
AGVND + A +L +L+ +
Sbjct: 222 RKRLMPVAEIYDINEVLDACSYYFKKTGRRVSFEYALVAGVNDSKQEAYKLIKLIK--NQ 279
Query: 246 GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF 305
HVNLIP NPIE Y++ KK F L I T+IR+ G D ACGQLR +
Sbjct: 280 KAHVNLIPVNPIEERQYRQSDKKKAEDFKNLLLKAGINTTIRREMGRDIDGACGQLRRHY 339
Query: 306 Q 306
+
Sbjct: 340 E 340
>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 150/317 (47%), Gaps = 77/317 (24%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQ------------LRNEFQKSPL 310
R + F+ L S+ TT +R+TRG D AACGQ LR Q +
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAI 379
Query: 311 RIDS-SNSSSESDIAVA 326
I + NSSS +A A
Sbjct: 380 DIKAVGNSSSVDKLAAA 396
>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|429101334|ref|ZP_19163308.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|426287983|emb|CCJ89421.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
Length = 388
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 265
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 266 RRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|111225135|ref|YP_715929.1| ribosomal RNA large subunit methyltransferase N [Frankia alni
ACN14a]
gi|122953799|sp|Q0RDQ8.1|RLMN_FRAAA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|111152667|emb|CAJ64408.1| Fe-S-cluster redox enzyme [Frankia alni ACN14a]
Length = 419
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 65/299 (21%)
Query: 75 RTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGK 133
RT++ DG T K + D L+E+V + + P R T CVSSQ GC + C FCATG+
Sbjct: 101 RTLSCDDGLTRKTAWRTADGALLESVIM-----RYPDRATVCVSSQAGCGMGCPFCATGQ 155
Query: 134 GGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRCL 185
GG +RNLS+ EIV QV+ + + R++NVVFMGMGEP+ N +V A R L
Sbjct: 156 GGLTRNLSTAEIVEQVVHAARVLRRQELAGGQGRLSNVVFMGMGEPLANYTAVTAALRRL 215
Query: 186 ----NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------- 222
+ + + R +T+STVG+ +++LA L TLA+
Sbjct: 216 IAPSPEGLGLSARGLTVSTVGLVPAMRRLAGEGLPVTLAVSLHAPDDELRDELVPINTRW 275
Query: 223 --------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256
GVND V A LA LL GR HVNLIP NP
Sbjct: 276 PVAEVLAAAWEYAEVTGRRVSIEYALIDGVNDDVARADALATLLA--GRLAHVNLIPLNP 333
Query: 257 IEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSS 315
EGS +Q AF L I T++R TRG + +AACGQL E R++S+
Sbjct: 334 TEGSSWQASAPAGQRAFVRRLRERGIATTVRDTRGREIAAACGQLAAEPAGRARRVESA 392
>gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1]
gi|123772061|sp|Q3K7B3.1|RLMN_PSEPF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 382
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 150/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
SA VND++EHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 QRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKDI--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVLDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
+SD+A
Sbjct: 371 DSDLA 375
>gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|424764142|ref|ZP_18191598.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|425055517|ref|ZP_18458991.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|431040136|ref|ZP_19492643.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|431064364|ref|ZP_19493711.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|431123802|ref|ZP_19498515.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|431593526|ref|ZP_19521855.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|431738470|ref|ZP_19527413.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|431751095|ref|ZP_19539788.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|431758108|ref|ZP_19546736.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|431763569|ref|ZP_19552118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|402421174|gb|EJV53436.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|403033825|gb|EJY45310.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|430561988|gb|ELB01241.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|430567434|gb|ELB06518.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|430569005|gb|ELB08035.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|430591403|gb|ELB29441.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|430597198|gb|ELB35001.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|430615912|gb|ELB52844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|430617771|gb|ELB54635.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|430621942|gb|ELB58683.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
Length = 355
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 147/282 (52%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 74 ASDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNIGCTFCASGLLKKNR 128
Query: 139 NLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
+L++ EIV Q++ ++ F RV++VV MG+GEP N +V++ +N K + I
Sbjct: 129 DLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS----------- 223
G R IT+ST G+ + IK+ A+ LQ LAI RS
Sbjct: 189 GARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVD 248
Query: 224 -----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND+ EHA +LA+LL + + +VNLIP+NP+ D Y R
Sbjct: 249 EYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRS 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K VL F L+ + + IR+ G D AACGQLR++ K
Sbjct: 309 PKADVLRFYDVLKKNGVNCVIRKEHGTDIDAACGQLRSKQMK 350
>gi|365540822|ref|ZP_09365997.1| ribosomal RNA large subunit methyltransferase N [Vibrio ordalii
ATCC 33509]
Length = 373
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 144/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP E+ R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMRVGDQD-VETVYIPEEE-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND +EHA ELA+L+ G +NLIPFNP GS Y
Sbjct: 251 RRYIATSNANRGKVTVEYVLLDHVNDDMEHAHELAKLMK--GTPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C]
gi|205829744|sp|B1I501.1|RLMN_DESAP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator
MP104C]
Length = 318
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 147/298 (49%), Gaps = 56/298 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRT-VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+P FR L VGRL + + V+AA TVK L+ L+D +ETV + + +
Sbjct: 19 LPAGFRKRLAGEA-VVGRLEVLDSRVSAAGDTVKYLLGLDDGHAVETVLMRHDYGR---- 73
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
T CVSSQVGC + C FCA+ GG+ RNL S E+ QVLA+ VT+VV MGMGEP
Sbjct: 74 -TVCVSSQVGCRMACRFCASALGGWIRNLRSGELYEQVLAVRRASGEPVTHVVLMGMGEP 132
Query: 172 MLNLKSVLE--AHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------- 222
+ N ++ L+ A+ +++ QR IT+ST G+ I+KLA +L TLAI
Sbjct: 133 LDNYENTLKFVANVTAPYGLRLSQRRITLSTCGLVPEIQKLARERLALTLAISLHAPNNA 192
Query: 223 --------------------------------------SAGVNDQVEHAVELAELLHEWG 244
GVND E A EL++LL G
Sbjct: 193 LRDTLVPVNRKYPLEQLIPACAEYARRTGRRVSFEYILLGGVNDSPELARELSDLL--TG 250
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
HVNLIP NP+ S Y+ P +AV F LE + S+R+ G D AACGQLR
Sbjct: 251 LLGHVNLIPANPVPESGYRAPSPEAVRTFRRVLEEGGVPVSLRRELGADIGAACGQLR 308
>gi|406915762|gb|EKD54811.1| hypothetical protein ACD_60C00041G0002 [uncultured bacterium]
Length = 381
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 141/288 (48%), Gaps = 61/288 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T+ DGT K +++L D IETV IP E +G T CVSSQVGC L C FC+TGK GF+
Sbjct: 79 TSLDGTHKWVLRLADGNCIETVFIP-EKTRG----TLCVSSQVGCTLNCDFCSTGKQGFN 133
Query: 138 RNLSSHEIVGQV-LAIEEIFK------HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++HEI+GQ+ +A+ + K H VTNVV MGMGEP+LN ++V+ A + D
Sbjct: 134 RNLTAHEIIGQLFIAVRSLSKQQGLHDHAVTNVVMMGMGEPLLNFENVVNAMNIMLDDFG 193
Query: 191 IG--QRMITISTVGVPNTIKKL---------------------------ASYKLQSTLA- 220
G +R +T+ST GV + +L Y L+ +
Sbjct: 194 YGLSKRRVTLSTAGVIPAMYELRKVSDVALAVSLHAPTDELRNVLVPLNKKYPLKELMTA 253
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ AG+ND +HA +L LL G VNLIPFNP + Y+
Sbjct: 254 CKEYFKEDKRRYVTMEYVMLAGINDSDQHAQQLIRLLK--GVRAKVNLIPFNPFPNTAYK 311
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
R + + F L I R+TRG AACGQL E + R
Sbjct: 312 RSDQPTIDRFRETLMRAGINAITRKTRGDAIDAACGQLVGEVKDRTKR 359
>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CFT073]
gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|386630287|ref|YP_006150007.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|386635207|ref|YP_006154926.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|386640048|ref|YP_006106846.1| radical SAM protein [Escherichia coli ABU 83972]
gi|422364837|ref|ZP_16445347.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|432412690|ref|ZP_19655352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|432432766|ref|ZP_19675193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|432437249|ref|ZP_19679637.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|432457589|ref|ZP_19699771.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|432496585|ref|ZP_19738381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|432505328|ref|ZP_19747051.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|432524722|ref|ZP_19761849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|432569611|ref|ZP_19806121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|432593743|ref|ZP_19830058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|432608411|ref|ZP_19844595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|432652051|ref|ZP_19887804.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|432784442|ref|ZP_20018621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|432845479|ref|ZP_20078279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|432974678|ref|ZP_20163515.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|432996233|ref|ZP_20184819.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|433000804|ref|ZP_20189328.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|433059003|ref|ZP_20246046.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|433088210|ref|ZP_20274580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|433116416|ref|ZP_20302205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|433126086|ref|ZP_20311641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|433140154|ref|ZP_20325407.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|433150071|ref|ZP_20335089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|433208650|ref|ZP_20392324.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|433213434|ref|ZP_20397024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|442608263|ref|ZP_21023023.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
gi|81475264|sp|Q8FF55.1|RLMN_ECOL6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|355421186|gb|AER85383.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|355426106|gb|AER90302.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|430934545|gb|ELC54900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|430952134|gb|ELC71341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|430962580|gb|ELC80437.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|430981596|gb|ELC98323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|431023843|gb|ELD37038.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|431037678|gb|ELD48654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|431051173|gb|ELD60848.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|431099101|gb|ELE04402.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|431127071|gb|ELE29386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|431137355|gb|ELE39202.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|431189906|gb|ELE89323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|431328865|gb|ELG16169.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|431394335|gb|ELG77871.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|431488410|gb|ELH68045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|431505263|gb|ELH83885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|431508196|gb|ELH86470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|431568536|gb|ELI41509.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|431603987|gb|ELI73403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|431633237|gb|ELJ01518.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|431643598|gb|ELJ11289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|431659158|gb|ELJ26056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|431669865|gb|ELJ36230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|431729935|gb|ELJ93554.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|431734459|gb|ELJ97860.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|441710868|emb|CCQ09000.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
Length = 384
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI- 221
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 222 -RSAG------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R G VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|395003902|ref|ZP_10387999.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
gi|394318186|gb|EJE54646.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
Length = 396
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 142/297 (47%), Gaps = 64/297 (21%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
V LP+ +ADGTVK L + +E V IP ED++G T C+SSQ GC + C
Sbjct: 85 VQALPVITEHVSADGTVKWLFDVGGGNAVEAVFIP-EDDRG----TLCISSQAGCAVGCR 139
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLE 180
FC+TG GFSRNL++ EIV Q+ E + R ++NVV MGMGEP+ N +++
Sbjct: 140 FCSTGHQGFSRNLTTGEIVAQLWFAEHALRKRLGKDERVISNVVMMGMGEPLQNYSALVP 199
Query: 181 AHRCLNKDVQIG--QRMITISTVGVPNTIKKLA--------------------------- 211
A R + D G +R +T+ST GV I +LA
Sbjct: 200 ALRVMLDDHAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDPLRDNLVPLNR 259
Query: 212 SYKLQSTLAIRS------------------AGVNDQVEHAVELAELLHEWGRGHHV---- 249
Y ++ LA + GVNDQ+EHA +L EL+ RG V
Sbjct: 260 KYPIEELLAACNRYLEHAPRDFITFEYCMLDGVNDQIEHARQLIELVKP-ARGEGVRCKF 318
Query: 250 NLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
NLIPFNP S R V AF L I T++R+TRG D AACGQL + +
Sbjct: 319 NLIPFNPFPASGLLRSSHAQVQAFGKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVK 375
>gi|420411163|ref|ZP_14910295.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4228]
gi|393029952|gb|EJB31031.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4228]
Length = 357
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKAFNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|422031852|ref|ZP_16377997.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|427552549|ref|ZP_18928490.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|427569106|ref|ZP_18933208.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|427589368|ref|ZP_18938001.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|427612789|ref|ZP_18942863.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|427637095|ref|ZP_18947765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|427656844|ref|ZP_18952524.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|427662098|ref|ZP_18957436.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|427672719|ref|ZP_18962252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
gi|414017601|gb|EKT01308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|414018305|gb|EKT01968.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|414031052|gb|EKT14130.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|414032534|gb|EKT15537.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|414035751|gb|EKT18608.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|414045819|gb|EKT28186.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|414046455|gb|EKT28782.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|414051403|gb|EKT33506.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|414058564|gb|EKT40224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
Length = 388
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 140/279 (50%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVL-------AIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A++ + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAVKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|344343058|ref|ZP_08773928.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
gi|343805610|gb|EGV23506.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
Length = 364
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 152/307 (49%), Gaps = 57/307 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+P + R L+E T RLP I +ADGT+K +++L D + IETV IP +G R
Sbjct: 53 LPLALRQQLRER--TEIRLPRIVHAHPSADGTIKWVMELTDGQHIETVFIP----EG-RR 105
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171
T CVSSQVGC L C FCAT K GF+RNL+ EI+ QV + TNVV MGMGEP
Sbjct: 106 STICVSSQVGCALDCRFCATAKQGFNRNLAVSEIIAQVWHATRHLQASPTNVVMMGMGEP 165
Query: 172 MLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTIKKL---ASYKLQSTL-----AI 221
+ N +V++A + D+ + ++ +T+STVG+ I++L + L +L A+
Sbjct: 166 LANFDAVVKAMAVMQDDLAYMLAKQRVTVSTVGIVPAIERLREVSDVSLAVSLHAPNDAL 225
Query: 222 RS-------------------------------------AGVNDQVEHAVELAELLHEWG 244
R+ AG+ND + HA +L LL G
Sbjct: 226 RNELVPINRKYPLAELIPACRRYVAADKRRKVTWEYIMIAGLNDSIAHAKQLIRLLE--G 283
Query: 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+NLIPFNP G DY + V AF L + + R+TRG + +AACGQL
Sbjct: 284 TPSKINLIPFNPFPGVDYATSPPEQVEAFRQRLIRSGLIATTRKTRGEEIAAACGQLVGR 343
Query: 305 FQKSPLR 311
Q R
Sbjct: 344 VQDRTRR 350
>gi|441504685|ref|ZP_20986678.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
gi|441427784|gb|ELR65253.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
Length = 374
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 150/299 (50%), Gaps = 66/299 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMRVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLRVSEIIGQVWRAAKEIGVEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA---------------- 224
G +R +T+ST GV + + ++ + LAI RS
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTD-NIDVALAISLHAPTDELRSQIMPINDRWNIDDFLGS 249
Query: 225 -----------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
VND +EHA +LA+ L + +NLIPFNP GS
Sbjct: 250 VRRYIASSNANRGRVTVEYVLLDHVNDDMEHARQLAKTLKD--TPAKINLIPFNPYPGSP 307
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSE 320
Y++P V F L + T ++R+TRG D AACGQL + R +++ ++E
Sbjct: 308 YKKPSNSRVDRFMKTLMEYDFTVTVRKTRGDDIDAACGQLVGDVIDRTKRTKANDENAE 366
>gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
gi|254807167|sp|B6IZM7.1|RLMN_COXB2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
Length = 370
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 149/304 (49%), Gaps = 59/304 (19%)
Query: 53 VPQSFRNDLQEAGWT-VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + FR L EA + V L + R +ADGT K L +L DN IETV IP D K R
Sbjct: 50 LSKPFRQQLSEASFVRVPELALERV--SADGTHKWLFRLADNNKIETVFIP--DRK---R 102
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK--HRVTNVVFMGMG 169
T CVSSQVGC L CSFCATGK GF+RNL+ EI+GQV + K +++TNVV MGMG
Sbjct: 103 GTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVVMMGMG 162
Query: 170 EPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKL----------------- 210
EP+LN ++V+ A + D G + +T+ST GV +++L
Sbjct: 163 EPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPND 222
Query: 211 ----------ASYKLQSTL------------------AIRSAGVNDQVEHAVELAELLHE 242
Y L + + G+ND++ A L LL +
Sbjct: 223 ALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRLIRLLAD 282
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+NLIPFN +G+ Y+ + A+ F L T +R+TRG D + ACGQL
Sbjct: 283 V--PCKINLIPFNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
Query: 303 NEFQ 306
+F
Sbjct: 341 GQFH 344
>gi|334125110|ref|ZP_08499104.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|419958889|ref|ZP_14474947.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
gi|449474378|ref|XP_004154155.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like
[Cucumis sativus]
gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|333387680|gb|EGK58874.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|388606192|gb|EIM35404.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
Length = 388
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 146/306 (47%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + ++DGT+K I + D R +ETV IP +D R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSSDGTIKWAIAVGDQR-VETVYIPEDD-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA E
Sbjct: 239 HAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHE 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|420476381|ref|ZP_14975048.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-21]
gi|393090288|gb|EJB90922.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-21]
Length = 357
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEKTNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|340623030|ref|YP_004741482.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga canimorsus Cc5]
gi|339903296|gb|AEK24375.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga canimorsus Cc5]
Length = 349
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/328 (31%), Positives = 155/328 (47%), Gaps = 56/328 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W G T + +P+S R ++ A + + + + + DGT+K ++
Sbjct: 29 RGNQVYEWLWTKGVH-TFEQMTNLPKSTR-EMLTANFVINHIKVDVMQRSTDGTIKNAVR 86
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D L+E+V IP P R TACVSSQVGC L C FCAT + RNL EI QV
Sbjct: 87 LHDGLLVESVLIPT-----PTRTTACVSSQVGCSLDCKFCATARLKRMRNLQPDEIYDQV 141
Query: 150 LAIE----EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGV 203
I+ F ++N+VFMGMGEP++N +VL+A + D + + + IT+ST G+
Sbjct: 142 KVIDTQSRTYFGRPLSNIVFMGMGEPLMNYNNVLKAIEKITSDEGLALSPKRITVSTSGI 201
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRG------- 246
P I+K+A ++ LA+ D+V ++ EL + L W
Sbjct: 202 PKMIRKMADDAVKFKLAVSLHSAIDEVRTSIMPFNEHFPLGELRKALEYWYSKTKSRITY 261
Query: 247 --------------------------HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ ++ +A+ + LE
Sbjct: 262 EYVVWKGINDQPKDIEALIKFCRFAPSKVNLIEYNPIDQGEFLSADAQAITLYQQLLEQA 321
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQKS 308
IT ++R++RG D AACGQL N+ K+
Sbjct: 322 GITVTVRRSRGKDIDAACGQLANKGSKA 349
>gi|110597428|ref|ZP_01385715.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
gi|110340972|gb|EAT59443.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
Length = 362
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 136/273 (49%), Gaps = 61/273 (22%)
Query: 83 TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSS 142
T K+L+KL DN LIETV IP E+ RLTAC+SSQ GC +C+FCATGK G RNL++
Sbjct: 88 TEKILLKLPDNELIETVLIPAEN-----RLTACLSSQAGCAFQCTFCATGKMGLHRNLTA 142
Query: 143 HEIVGQVLAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCL---NKDVQIGQR 194
EI GQV A+ I R +TN+VFMGMGEP++N ++LE+ L N +V + Q+
Sbjct: 143 GEIAGQVYALNAIVSMRKPDKKITNIVFMGMGEPLMNYDNILESIETLTTKNYNVTLSQK 202
Query: 195 MITISTVGVPNTIKKLASYKLQSTLAIR-------------------------------- 222
ITISTVGV I+KL + L++ LA+
Sbjct: 203 KITISTVGVIPQIRKLGASGLKTKLAVSLHAAEQQKRESLMPVAAKLYPLNELGKALAGY 262
Query: 223 --------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
G+ND +E A LA H G +NLI +N I ++
Sbjct: 263 SSATAMPVTIVYMLQKGINDSLEDAKLLARFAH--GFLCKINLIDYNSIINIRFKPVNSS 320
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ F L + ++R++ G +AACGQL
Sbjct: 321 SREVFQQYLIDSGLHVTVRKSYGTTINAACGQL 353
>gi|420409463|ref|ZP_14908612.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4216]
gi|393021276|gb|EJB22409.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4216]
Length = 357
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|419841704|ref|ZP_14365067.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|386904079|gb|EIJ68877.1| 23S rRNA m2A2503 methyltransferase [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
Length = 349
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 145/281 (51%), Gaps = 53/281 (18%)
Query: 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
V+ D T K L +LED IETV + D++ T C+SSQVGCP++C+FCATG+ GF
Sbjct: 73 VSKIDKTEKFLFQLEDGNTIETVLLRHRDQRN----TLCISSQVGCPVKCTFCATGQDGF 128
Query: 137 SRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
RNL EI+ QV IE R +TN+VFMGMGEP++N+ ++L+A L+ + + I
Sbjct: 129 VRNLRVSEILNQVYTIERRLNKRGEKLTNLVFMGMGEPLINIDALLKALEILSCEEGICI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIR-SAGVNDQVEHAV---------ELAELLH 241
+R ITIST G+ I+++ K LAI + +N++ + +L+ +L
Sbjct: 189 SKRKITISTSGIVPAIERILMEKTPVELAISLHSAINEKRNRIIPINKAYPLEDLSAVLL 248
Query: 242 EWGR---------------------------------GHHVNLIPFNPIEGSDYQRPYKK 268
E+ R H VNLIP NP+ + +RP +K
Sbjct: 249 EYQRQTKRRLTFEYILIKDFNVSEGDANALAGFAHQFDHIVNLIPCNPVSETGLERPSEK 308
Query: 269 AVLAFAGALES-HKITTSIRQTRGLDASAACGQLRNEFQKS 308
+ F L++ K+ S+RQ +G D ACGQLR +K
Sbjct: 309 KIERFYEYLKNVRKVNVSLRQEKGTDIDGACGQLRQNQRKK 349
>gi|254228668|ref|ZP_04922092.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
gi|262395120|ref|YP_003286974.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
gi|451970707|ref|ZP_21923932.1| radical SAM enzyme, Cfr family [Vibrio alginolyticus E0666]
gi|151938847|gb|EDN57681.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
gi|262338714|gb|ACY52509.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
gi|451933435|gb|EMD81104.1| radical SAM enzyme, Cfr family [Vibrio alginolyticus E0666]
Length = 375
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 145/279 (51%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K + + D +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 77 SSDGTIKWAMNVGDQD-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQV------LAIE-EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV + +E E + +TNVV MGMGEP+LN+K+++ A + D+
Sbjct: 131 NLKVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGF 190
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + + ++ + +Q LA
Sbjct: 191 GLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASV 250
Query: 221 ---IRSAG---------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
I S+ VND ++HA ELAEL+ + +NLIPFNP GS Y
Sbjct: 251 RRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD--TPCKINLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
++P + F L ++ T ++R+TRG D AACGQL
Sbjct: 309 KKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|421722357|ref|ZP_16161621.1| 23S rRNA methyltransferase [Helicobacter pylori R055a]
gi|407222955|gb|EKE92750.1| 23S rRNA methyltransferase [Helicobacter pylori R055a]
Length = 357
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ FA L + + +IR+++ LD AACGQLR
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|424924744|ref|ZP_18348105.1| radical SAM enzyme [Pseudomonas fluorescens R124]
gi|404305904|gb|EJZ59866.1| radical SAM enzyme [Pseudomonas fluorescens R124]
Length = 382
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 150/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY-------------------------------KLQST 218
G +R +T+ST GV I +LA + L+S
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 219 LAIRSA---------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
SA VND++EHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 QRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKDI--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVLDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
+SD+A
Sbjct: 371 DSDLA 375
>gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-7]
gi|123326715|sp|Q0HX60.1|RLMN_SHESR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7]
Length = 373
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 139/290 (47%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K I + + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 STDGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFAKDTGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND E A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410862372|ref|YP_006977606.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410819634|gb|AFV86251.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
Length = 372
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 136/279 (48%), Gaps = 63/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +E+V IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 74 ASDGTIKFALTLEGGQEVESVWIPETD-----RATLCVSSQVGCALECTFCSTAQQGFNR 128
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + K +TNVV MGMGEP+LNLK+V+ A + D
Sbjct: 129 NLSVSEIIGQVWRVATFLGLSKDSSKRPITNVVMMGMGEPLLNLKNVVPAMDIMLDDFGF 188
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + L Y +++ LA
Sbjct: 189 GLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPTDELRNEIVPVNKKYNIEAFLAGV 248
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ + +ND E A +LA++L + +NLIPFNP GS Y
Sbjct: 249 RRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQLAKVLKD--TPSKINLIPFNPYPGSPY 306
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ F+ L + TT +R+TRG D AACGQL
Sbjct: 307 TCSSNSRIDRFSKVLMEYGFTTVVRKTRGDDIDAACGQL 345
>gi|425791448|ref|YP_007019365.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Aklavik86]
gi|425629763|gb|AFX90303.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Aklavik86]
Length = 357
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 157/334 (47%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L+DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLKDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
FA L S + +IR+++ LD AACGQLR
Sbjct: 316 NARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|406831254|ref|ZP_11090848.1| radical SAM protein [Schlesneria paludicola DSM 18645]
Length = 359
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 143/282 (50%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A D T KLL++L D +LIE V + D R T C+S+QVGC + C FCA+G G R
Sbjct: 84 ANDRTEKLLLELGDGQLIECVLMRETD-----RRTICISTQVGCAMGCVFCASGMLGLKR 138
Query: 139 NLSSHEIVGQVLAIEEIFK--HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQR 194
NL++ EI+ Q+L ++ + ++TNVV MG+GEP+ NLKS++ A LN+ + IG R
Sbjct: 139 NLTTGEILEQILRLDRLLAKGEQITNVVVMGIGEPLANLKSLVPALDTLNEKGGLGIGAR 198
Query: 195 MITISTVGVPNTIKKLASYKLQSTLAIR-------------------------------- 222
ITISTVG+P I++LA Q LA+
Sbjct: 199 RITISTVGLPEKIRELAKLGKQYNLAVSLHAPNDELRNRLVPVNDKIGIDAILAAADEYF 258
Query: 223 -------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
+GVND+ HA +LA+ L R HVNLIP N + ++ P
Sbjct: 259 EITGRRVTYEYVLLSGVNDEPFHARQLAKRLQ--SRIAHVNLIPMNGVTELEFVAPTAPR 316
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLR--NEFQKSP 309
F LES I ++R+ +G D AACGQLR E +K+P
Sbjct: 317 TDEFVQVLESFGIPATVRKRKGADIDAACGQLRLAKEREKTP 358
>gi|392980211|ref|YP_006478799.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
gi|392326144|gb|AFM61097.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 146/306 (47%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + ++DGT+K I + D R +ETV IP ED R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSSDGTIKWAIAVGDQR-VETVYIPEED-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA +
Sbjct: 239 HAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQ 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|410621688|ref|ZP_11332534.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410158926|dbj|GAC27908.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 385
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 154/331 (46%), Gaps = 67/331 (20%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRT-VTAADGTVKL 86
P R Q W + G S + + + R+ L+ V + P+ A DGT+K
Sbjct: 38 PFRAEQIMKWIYQVGESDFDKMTN-INKDLRSKLKSN--CVIKAPVISEHQQATDGTIKF 94
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
+ LE + IE+V IP D R T CVSSQVGC L C+FC+TG+ GF+RNLS EI+
Sbjct: 95 AMLLEGGQEIESVWIPETD-----RATLCVSSQVGCALECTFCSTGQQGFNRNLSVAEII 149
Query: 147 GQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMIT 197
GQV + ++ + +TNVV MGMGEP+LNLK+V+ A R + D G +R +T
Sbjct: 150 GQVWRVATFIGLSKDTSQRPITNVVMMGMGEPLLNLKNVVPAMRIMLDDFGFGLSKRRVT 209
Query: 198 ISTVGVPNTIKKLAS---------------------------YKLQSTLA---------- 220
+ST GV + L Y ++ LA
Sbjct: 210 LSTSGVVPALDMLGDQIDVALAISLHAPDNKLRDEIVPVNKKYPIEEFLASVRRYLAKSK 269
Query: 221 ----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
+ +ND + A ELA++L E +NLIPFNP G+ Y +
Sbjct: 270 ANQGKVTVEYVMLNQINDSTDQAHELAKVLKE--TPCKINLIPFNPYPGTPYTCSSNSRM 327
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQL 301
F+ L + T IR+TRG D AACGQL
Sbjct: 328 DRFSKVLMEYGFTVVIRKTRGDDIDAACGQL 358
>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
gi|123264706|sp|Q1QD22.1|RLMN_PSYCK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|92393156|gb|ABE74431.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter cryohalolentis
K5]
Length = 413
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 156/340 (45%), Gaps = 70/340 (20%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + G + + + +S R+ L + I R + DGT K +
Sbjct: 54 PFRSTQVIKWIYQQGVTDFEQMTN-LSKSLRDKLSANACVIPPKVIHRQYSD-DGTRKWV 111
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
++ L+ETV IP +D K R T CVSSQVGC L CSFC+TGK GF R+L++ EI+G
Sbjct: 112 FEVTGGSLVETVLIPADDSKLNGRKTLCVSSQVGCALDCSFCSTGKQGFERDLTAAEILG 171
Query: 148 QVL------------AIEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
Q+ ++E + +++ VTNVV MGMGEP+LN + V+ + + D
Sbjct: 172 QLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAY 231
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + +LA Y L+ +A
Sbjct: 232 GLSKRRVTLSTSGVVPKMYELAQELDVALAISLHAPNDELRNELVPINKKYPLEQLMAAA 291
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ GVND EHA +L LL +NLIPFNP ++
Sbjct: 292 RNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGNLPS--KINLIPFNPFPHAN 349
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y + + AF+ L +IRQTRG D AACGQL
Sbjct: 350 YDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAACGQL 389
>gi|291456892|ref|ZP_06596282.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|384196900|ref|YP_005582644.1| 2-vinyl bacteriochlorophyllide hydratase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|291382169|gb|EFE89687.1| radical SAM enzyme, Cfr family [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|333110216|gb|AEF27232.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|339479311|gb|ABE95779.1| Radical SAM family enzyme [Bifidobacterium breve UCC2003]
Length = 389
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMGCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EIV QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIVEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTTQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEKQFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|432835471|ref|ZP_20069009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
gi|431384635|gb|ELG68681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVL-------AIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A++ + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAVKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 146/306 (47%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + ++DGT+K I + D R +ETV IP +D R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSSDGTIKWAIAVGDQR-VETVYIPEDD-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA E
Sbjct: 239 HAPNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHE 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|420441103|ref|ZP_14940053.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-30]
gi|393054244|gb|EJB55173.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-30]
Length = 357
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|389783332|ref|ZP_10194765.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter
spathiphylli B39]
gi|388434846|gb|EIL91775.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter
spathiphylli B39]
Length = 374
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 151/327 (46%), Gaps = 61/327 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R Q W + V ++ R L E + +G A DGT K L
Sbjct: 30 PYRAEQVMKW-IYHDLEDNFENMTDVGKALRAKLTEVCY-IGAPKTLLDKVATDGTHKWL 87
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ ++ IETV IP P R T CVSSQ+GC L C FC+TG GF+RNLS+ EI+G
Sbjct: 88 LGMDSGNAIETVYIP-----EPTRGTLCVSSQIGCALNCQFCSTGAQGFNRNLSTAEIIG 142
Query: 148 QVLAIEEIF------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIS 199
QV + R+TNVV MGMGEP+ N ++VL+A + + D+ G + +T+S
Sbjct: 143 QVWVAAKYLGNVTHQNRRITNVVMMGMGEPLANFENVLKAMKLMRDDLGFGLAAKRVTLS 202
Query: 200 TVGVPNTIKKLAS---------------------------YKLQSTLAI---------RS 223
T G+ I +L+ Y L LA R+
Sbjct: 203 TAGMVPLIDQLSDAIDVSLAVSLHAANDDLRTELMPINKRYPLAELLAACQRWVARKPRT 262
Query: 224 A---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
+ G+NDQ EH +L +L+ + VNLIPFNP G+ ++R + F
Sbjct: 263 SITFEYTLMKGINDQPEHVRQLIKLMRKLPTC-KVNLIPFNPFPGTQFKRSDANDIHQFQ 321
Query: 275 GALESHKITTSIRQTRGLDASAACGQL 301
L + + T +R+TRG D AACGQL
Sbjct: 322 TQLLNAGVLTMLRRTRGDDIDAACGQL 348
>gi|423141156|ref|ZP_17128794.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379053710|gb|EHY71601.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SADGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND +HA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTDHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ATCC 35469]
gi|422806473|ref|ZP_16854905.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|424815430|ref|ZP_18240581.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
gi|254807182|sp|B7LKC1.1|RLMN_ESCF3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|322691316|ref|YP_004220886.1| hypothetical protein BLLJ_1127 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456172|dbj|BAJ66794.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 389
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMDCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTKQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 357
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 142/279 (50%), Gaps = 58/279 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K L++L D LIETV + + L+ CV++QVGC + CSFCA+G SR
Sbjct: 76 STDGTIKFLLRLTDGNLIETVLM-----RHKFGLSVCVTTQVGCNIGCSFCASGLLAKSR 130
Query: 139 NLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQI 191
+L+S EIVGQ++ ++ RVT++V MG+GEP N ++++ + +K + I
Sbjct: 131 DLTSGEIVGQIMKVQLHLDQAGQGERVTHIVVMGIGEPFDNFANMVDFINVVKDHKGLAI 190
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAIR----------------------------- 222
G R IT+ST G+ N I + LQ LAI
Sbjct: 191 GPRHITVSTSGLANKIYEFTDSNLQVNLAISLHAPNDELRTRIMKINRAIPIAKLMEAID 250
Query: 223 ----------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPI-EGSDYQRP 265
VND+ EHA+ELAEL+ E +VNLIP+NP+ E S YQR
Sbjct: 251 YYLAKTNRRITLEYILLKDVNDRKEHALELAELVGERRSLANVNLIPYNPVDEHSQYQRS 310
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ ++ F L+ ++ S+R G D AACGQLR++
Sbjct: 311 EQDSIREFYDTLKKQGVSCSVRLEHGTDIDAACGQLRSK 349
>gi|417708574|ref|ZP_12357605.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|417713570|ref|ZP_12362535.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|417718409|ref|ZP_12367306.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|417828928|ref|ZP_12475479.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|420321407|ref|ZP_14823235.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|420331866|ref|ZP_14833523.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|335574783|gb|EGM61101.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|391247478|gb|EIQ06727.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|391251426|gb|EIQ10641.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|306822705|ref|ZP_07456083.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
gi|304554250|gb|EFM42159.1| cfr family radical SAM enzyme [Bifidobacterium dentium ATCC 27679]
Length = 393
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 144/306 (47%), Gaps = 63/306 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P + R + EA + + R V T+K L +L D LIE+V + + P R T
Sbjct: 87 PANKRAEAAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSLIESVLM-----RYPTRTT 141
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVF 165
C+SSQVGC + C FCATGK G +RN+S+ EIV QV + + R++N+VF
Sbjct: 142 LCISSQVGCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPGRLSNIVF 201
Query: 166 MGMGEPMLNLKSVLEAHRCLN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI 221
MGMGEPM N +SVL A R ++ + I R IT+STVGV IKKL + + LA+
Sbjct: 202 MGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAV 261
Query: 222 R---------------------------------------------SAGVNDQVEHAVEL 236
G+NDQ EHA L
Sbjct: 262 SLHAPSDELRDELVPMNKRFDITQVLDAAHDYYLASKRRVSIEYALMRGINDQAEHARLL 321
Query: 237 AELLHEWGRG-HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
A+ L+ +G HVN IP NPIEGS + + F L +T ++R TRG D
Sbjct: 322 AKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDID 381
Query: 296 AACGQL 301
ACGQL
Sbjct: 382 GACGQL 387
>gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 389
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMGCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTKQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRSGITATLRDTRGQDIDGACGQL 384
>gi|23466064|ref|NP_696667.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum NCC2705]
gi|81753640|sp|Q8G481.1|RLMN_BIFLO RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|23326790|gb|AAN25303.1| widely conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 389
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMDCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTKQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|374599017|ref|ZP_09672019.1| 23S rRNA m(2)A-2503 methyltransferase [Myroides odoratus DSM 2801]
gi|423324154|ref|ZP_17301995.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CIP 103059]
gi|373910487|gb|EHQ42336.1| 23S rRNA m(2)A-2503 methyltransferase [Myroides odoratus DSM 2801]
gi|404608638|gb|EKB08096.1| ribosomal RNA large subunit methyltransferase N [Myroides
odoratimimus CIP 103059]
Length = 346
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 145/291 (49%), Gaps = 54/291 (18%)
Query: 63 EAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGC 122
E + + + + ++DGT+K +KL D ++E+V IP E R TACVSSQVGC
Sbjct: 60 EDHFVINHIRVDNMQISSDGTIKNGVKLHDGLIVESVLIPTE-----TRTTACVSSQVGC 114
Query: 123 PLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR----VTNVVFMGMGEPMLNLKSV 178
L C FCAT K RNL+ EI QVL I++ + ++N+VFMGMGEP++N +V
Sbjct: 115 SLDCEFCATAKLKRMRNLNPDEIYDQVLTIDQQSRQNHGRPLSNIVFMGMGEPLMNYNNV 174
Query: 179 LEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV-- 234
A + + +G + IT+ST G+P I+KLA +++ LA+ ++ + +
Sbjct: 175 QAAIDKITSEEGLGMSPKRITVSTSGIPKMIRKLADDQVKFKLAVSLHSAIEETRNRIMP 234
Query: 235 --------ELAELLHEWGRG---------------------------------HHVNLIP 253
+L + L W VNLI
Sbjct: 235 FSKSFPLTDLRDALQYWYSKTKSRITFEYVVWKGINDDKASIDALVKFCKQMPSKVNLIE 294
Query: 254 FNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+NPI+ ++Q+ +A+ + ALES+ IT +R++RG D AACGQL N+
Sbjct: 295 YNPIDDGEFQQADNQAINNYIKALESNDITVVVRRSRGKDIDAACGQLANK 345
>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|415822426|ref|ZP_11511054.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|417188986|ref|ZP_12012544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|417207662|ref|ZP_12019883.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|417592852|ref|ZP_12243547.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|419198017|ref|ZP_13741403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|419204532|ref|ZP_13747712.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|419222526|ref|ZP_13765447.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|419887608|ref|ZP_14408182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|419894069|ref|ZP_14414009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|420087423|ref|ZP_14599393.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
gi|420097590|ref|ZP_14608885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|345337027|gb|EGW69460.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|378046574|gb|EHW08953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|378047653|gb|EHW10015.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|378065101|gb|EHW27251.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|386192531|gb|EIH81255.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|386196976|gb|EIH91184.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|388362476|gb|EIL26483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|388365275|gb|EIL29078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|394383752|gb|EJE61339.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|394393294|gb|EJE69983.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|171742890|ref|ZP_02918697.1| hypothetical protein BIFDEN_02007 [Bifidobacterium dentium ATCC
27678]
gi|171278504|gb|EDT46165.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium dentium ATCC
27678]
Length = 393
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 144/306 (47%), Gaps = 63/306 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P + R + EA + + R V T+K L +L D LIE+V + + P R T
Sbjct: 87 PANKRAEAAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSLIESVLM-----RYPTRTT 141
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVF 165
C+SSQVGC + C FCATGK G +RN+S+ EIV QV + + R++N+VF
Sbjct: 142 LCISSQVGCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPGRLSNIVF 201
Query: 166 MGMGEPMLNLKSVLEAHRCLN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI 221
MGMGEPM N +SVL A R ++ + I R IT+STVGV IKKL + + LA+
Sbjct: 202 MGMGEPMGNYRSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAV 261
Query: 222 R---------------------------------------------SAGVNDQVEHAVEL 236
G+NDQ EHA L
Sbjct: 262 SLHAPSDELRDELVPMNKRFDTTQVLDAAHDYYLASKRRVSIEYALMRGINDQAEHARLL 321
Query: 237 AELLHEWGRG-HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
A+ L+ +G HVN IP NPIEGS + + F L +T ++R TRG D
Sbjct: 322 AKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDID 381
Query: 296 AACGQL 301
ACGQL
Sbjct: 382 GACGQL 387
>gi|432863380|ref|ZP_20087427.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
gi|431403978|gb|ELG87238.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 372
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 150/286 (52%), Gaps = 68/286 (23%)
Query: 76 TVTAA----DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCAT 131
TV+AA DGT+K +++ D +ETV IP +D R T CVSSQVGC L C FC+T
Sbjct: 70 TVSAAQYSKDGTIKWAMRVGDQD-VETVYIPDDD-----RATLCVSSQVGCALECKFCST 123
Query: 132 GKGGFSRNLSSHEIVGQVL-AIEEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRC 184
+ GF+RNL EI+GQV A +EI + +TNVV MGMGEP+LN+K++L A
Sbjct: 124 AQQGFNRNLCVSEIIGQVWRAAKEIGVQKETGRRPITNVVMMGMGEPLLNMKNLLPALEI 183
Query: 185 LNKDVQIG--QRMITISTVGVPNTIKKLA--------------SYKLQSTL--------- 219
+ D+ G +R +T+ST GV + ++++ + +L+S +
Sbjct: 184 MLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINNRWNI 243
Query: 220 -----AIRS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255
A+R +ND +EHA +LA++L + +NLIPFN
Sbjct: 244 EEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLAKVLKD--TPAKINLIPFN 301
Query: 256 PIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
P GS Y +P + F L + IT ++R+TRG D AACGQL
Sbjct: 302 PYPGSPYNKPSNSRIDRFMKTLMEYDITVTVRKTRGDDIDAACGQL 347
>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UMN026]
gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|417587516|ref|ZP_12238285.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|419933201|ref|ZP_14450469.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|432354433|ref|ZP_19597704.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|432402782|ref|ZP_19645534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|432427048|ref|ZP_19669547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|432461514|ref|ZP_19703661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|432476738|ref|ZP_19718735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|432518616|ref|ZP_19755802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|432538739|ref|ZP_19775639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|432632278|ref|ZP_19868203.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|432641994|ref|ZP_19877826.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|432666943|ref|ZP_19902522.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|432775597|ref|ZP_20009866.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|432887494|ref|ZP_20101547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|432913734|ref|ZP_20119367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|433019580|ref|ZP_20207780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|433054161|ref|ZP_20241335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|433068807|ref|ZP_20255593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|433159562|ref|ZP_20344397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|433179352|ref|ZP_20363747.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
gi|254807179|sp|B7N6A5.1|RLMN_ECOLU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|345335546|gb|EGW67984.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|388414231|gb|EIL74197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|430874840|gb|ELB98392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|430925253|gb|ELC45926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|430954747|gb|ELC73602.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|430988335|gb|ELD04829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|431004556|gb|ELD19770.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|431050410|gb|ELD60160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|431068619|gb|ELD77093.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|431169856|gb|ELE70071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|431181257|gb|ELE81128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|431199769|gb|ELE98496.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|431317601|gb|ELG05379.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|431415843|gb|ELG98338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|431438999|gb|ELH20368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|431529888|gb|ELI06579.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|431569590|gb|ELI42532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|431582690|gb|ELI54702.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|431677054|gb|ELJ43136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|431700235|gb|ELJ65217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
Length = 339
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 43 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 96
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 97 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 156
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 157 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 216
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 217 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 274
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 275 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 313
>gi|225010483|ref|ZP_03700954.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
gi|225005312|gb|EEG43263.1| radical SAM enzyme, Cfr family [Flavobacteria bacterium MS024-3C]
Length = 353
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 154/324 (47%), Gaps = 56/324 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG Q W + GA + + R L E + + + + + + DGT+K ++
Sbjct: 31 RGNQVYEWLWQKGAHSFESMTN-ISKETRAFL-ETHFVINHIRVDQMQRSNDGTIKNAVR 88
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L DN ++E+V IP + R TACVSSQVGC L C FCAT + RNL EI QV
Sbjct: 89 LHDNLVVESVLIPTK-----TRTTACVSSQVGCSLDCKFCATSRLKRMRNLQPDEIYDQV 143
Query: 150 LAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGV 203
+AI++ F ++N+VFMGMGEP++N +VL+A + + + + + I +ST GV
Sbjct: 144 VAIDQQSRLYFNRPLSNIVFMGMGEPLMNYNNVLKAIEKITDPEGLAMSPKRIIVSTSGV 203
Query: 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELLHEWGRGH------ 247
P I+K+A ++ LA+ D V + +L E L W
Sbjct: 204 PKMIRKMAEDGVKFKLAVSLHSAIDSVRTTIMPFNETFPLAQLREALQFWYEKTKSRITY 263
Query: 248 ---------------------------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
VNLI +NPI+ + + + A+ A+ LE H
Sbjct: 264 EYVVWKGINDNKAAIDALVEFCKFAPAKVNLIEYNPIDDGMFSQASQAAIDAYVNTLERH 323
Query: 281 KITTSIRQTRGLDASAACGQLRNE 304
IT ++R++RG D AACGQL N+
Sbjct: 324 NITCTVRRSRGKDIDAACGQLANK 347
>gi|417476930|ref|ZP_12171284.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353639177|gb|EHC84531.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
Length = 401
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 105 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 158
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 159 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 218
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 219 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 278
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 279 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 336
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 337 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 375
>gi|385218082|ref|YP_005779558.1| hypothetical protein HPF16_1323 [Helicobacter pylori F16]
gi|317178131|dbj|BAJ55920.1| hypothetical protein HPF16_1323 [Helicobacter pylori F16]
Length = 357
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 157/336 (46%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + + D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMRDKKIDGETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 IRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNAGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLIPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|239621375|ref|ZP_04664406.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|384201448|ref|YP_005587195.1| hypothetical protein BLNIAS_01312 [Bifidobacterium longum subsp.
longum KACC 91563]
gi|239515836|gb|EEQ55703.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|338754455|gb|AEI97444.1| hypothetical protein BLNIAS_01312 [Bifidobacterium longum subsp.
longum KACC 91563]
Length = 389
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMDCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTKQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|208435296|ref|YP_002266962.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori G27]
gi|254807184|sp|B5Z947.1|RLMN_HELPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|208433225|gb|ACI28096.1| hypothetical protein HPG27_1349 [Helicobacter pylori G27]
Length = 357
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRKSIDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCTFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
coli str. K-12 substr. MG1655]
gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
Ss046]
gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
Sb227]
gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UTI89]
gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
gi|117624746|ref|YP_853659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O1]
gi|157157838|ref|YP_001463839.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E24377A]
gi|170019200|ref|YP_001724154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 8739]
gi|170082127|ref|YP_001731447.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
str. K-12 substr. DH10B]
gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SMS-3-5]
gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
CDC 3083-94]
gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SE11]
gi|215487867|ref|YP_002330298.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O127:H6 str. E2348/69]
gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI1]
gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
S88]
gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ED1a]
gi|218696144|ref|YP_002403811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
55989]
gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI39]
gi|222157223|ref|YP_002557362.1| hypothetical protein LF82_3091 [Escherichia coli LF82]
gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238901682|ref|YP_002927478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
BW2952]
gi|251785842|ref|YP_003000146.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
str. REL606]
gi|254289252|ref|YP_003055000.1| hypothetical protein ECD_02409 [Escherichia coli BL21(DE3)]
gi|260845147|ref|YP_003222925.1| enzyme [Escherichia coli O103:H2 str. 12009]
gi|260856611|ref|YP_003230502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. 11368]
gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|378712022|ref|YP_005276915.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|383179527|ref|YP_005457532.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
53G]
gi|386281584|ref|ZP_10059246.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386594714|ref|YP_006091114.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|386600495|ref|YP_006102001.1| 2-vinyl bacteriochlorophyllide hydratase [Escherichia coli IHE3034]
gi|386603443|ref|YP_006109743.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|386609919|ref|YP_006125405.1| radical SAM protein [Escherichia coli W]
gi|386615220|ref|YP_006134886.1| hypothetical protein UMNK88_3167 [Escherichia coli UMNK88]
gi|386620124|ref|YP_006139704.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|386625254|ref|YP_006144982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|386700537|ref|YP_006164374.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|386705782|ref|YP_006169629.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|386710407|ref|YP_006174128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|387608167|ref|YP_006097023.1| radical SAM superfamily protein [Escherichia coli 042]
gi|387613113|ref|YP_006116229.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|387617833|ref|YP_006120855.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|387622217|ref|YP_006129845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|387830414|ref|YP_003350351.1| hypothetical protein ECSF_2361 [Escherichia coli SE15]
gi|388478553|ref|YP_490745.1| hypothetical protein Y75_p2470 [Escherichia coli str. K-12 substr.
W3110]
gi|407470413|ref|YP_006783144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407480925|ref|YP_006778074.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410481491|ref|YP_006769037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|414577238|ref|ZP_11434417.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|415778573|ref|ZP_11489619.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|415784568|ref|ZP_11492389.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|415803712|ref|ZP_11500691.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|415815169|ref|ZP_11506689.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|415828718|ref|ZP_11515190.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|415840204|ref|ZP_11521693.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|415844083|ref|ZP_11523887.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|415862465|ref|ZP_11535931.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|415874042|ref|ZP_11541184.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|416268576|ref|ZP_11642205.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|416283497|ref|ZP_11646839.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|416299209|ref|ZP_11652290.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|416335671|ref|ZP_11672364.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|416344049|ref|ZP_11677949.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|416898710|ref|ZP_11928256.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|417085917|ref|ZP_11953227.1| methyltransferase [Escherichia coli cloneA_i1]
gi|417115193|ref|ZP_11966329.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|417135332|ref|ZP_11980117.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|417140771|ref|ZP_11983882.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|417146392|ref|ZP_11987350.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|417155465|ref|ZP_11993594.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|417163553|ref|ZP_11998741.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|417175320|ref|ZP_12005116.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|417185071|ref|ZP_12010567.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|417221985|ref|ZP_12025425.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|417231146|ref|ZP_12032544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|417237952|ref|ZP_12035683.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|417251892|ref|ZP_12043657.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|417261683|ref|ZP_12049171.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|417269007|ref|ZP_12056367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|417272691|ref|ZP_12060040.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|417278205|ref|ZP_12065521.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|417280820|ref|ZP_12068120.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|417286506|ref|ZP_12073795.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|417290622|ref|ZP_12077903.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|417299867|ref|ZP_12087094.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|417309002|ref|ZP_12095843.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|417582020|ref|ZP_12232822.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|417597826|ref|ZP_12248461.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|417603171|ref|ZP_12253741.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|417613983|ref|ZP_12264441.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|417619101|ref|ZP_12269515.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|417624472|ref|ZP_12274771.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|417629816|ref|ZP_12280053.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|417635489|ref|ZP_12285701.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|417640270|ref|ZP_12290411.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|417663074|ref|ZP_12312655.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|417667919|ref|ZP_12317464.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|417683190|ref|ZP_12332540.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|417756774|ref|ZP_12404848.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|417806068|ref|ZP_12453014.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|417833812|ref|ZP_12480259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|417863144|ref|ZP_12508192.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|417943679|ref|ZP_12586926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|417975814|ref|ZP_12616611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|418041587|ref|ZP_12679806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|418267013|ref|ZP_12886456.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|418303966|ref|ZP_12915760.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|418941814|ref|ZP_13495126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|418957110|ref|ZP_13509034.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|418997594|ref|ZP_13545188.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|419003071|ref|ZP_13550595.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|419008754|ref|ZP_13556185.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|419014428|ref|ZP_13561776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|419019446|ref|ZP_13566752.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|419024946|ref|ZP_13572172.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|419029983|ref|ZP_13577144.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|419035279|ref|ZP_13582365.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|419040669|ref|ZP_13587697.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|419143467|ref|ZP_13688205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|419149288|ref|ZP_13693941.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|419154916|ref|ZP_13699477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|419160204|ref|ZP_13704709.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|419165320|ref|ZP_13709776.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|419171186|ref|ZP_13715072.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|419176148|ref|ZP_13719964.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|419181817|ref|ZP_13725430.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|419187264|ref|ZP_13730778.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|419192563|ref|ZP_13736015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|419210746|ref|ZP_13753823.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|419216607|ref|ZP_13759606.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|419227872|ref|ZP_13770723.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|419233595|ref|ZP_13776370.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|419238885|ref|ZP_13781600.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|419244362|ref|ZP_13787000.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|419250173|ref|ZP_13792752.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|419255999|ref|ZP_13798512.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|419262309|ref|ZP_13804723.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|419268253|ref|ZP_13810605.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|419273750|ref|ZP_13816045.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|419279050|ref|ZP_13821296.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|419285217|ref|ZP_13827388.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|419290445|ref|ZP_13832537.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|419295839|ref|ZP_13837882.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|419301234|ref|ZP_13843233.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|419307362|ref|ZP_13849261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|419312372|ref|ZP_13854234.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|419317808|ref|ZP_13859610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|419323957|ref|ZP_13865650.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|419329946|ref|ZP_13871550.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|419335579|ref|ZP_13877104.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|419340956|ref|ZP_13882420.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|419346164|ref|ZP_13887538.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|419350624|ref|ZP_13891961.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|419356047|ref|ZP_13897304.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|419361141|ref|ZP_13902358.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|419366035|ref|ZP_13907196.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|419371001|ref|ZP_13912120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|419376450|ref|ZP_13917474.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|419381786|ref|ZP_13922736.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|419387130|ref|ZP_13928008.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|419392635|ref|ZP_13933442.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|419397620|ref|ZP_13938388.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|419402962|ref|ZP_13943686.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|419408081|ref|ZP_13948770.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|419413671|ref|ZP_13954323.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|419701361|ref|ZP_14228962.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|419803528|ref|ZP_14328698.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|419810226|ref|ZP_14335108.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|419865991|ref|ZP_14388362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|419872747|ref|ZP_14394772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|419878645|ref|ZP_14400109.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|419885683|ref|ZP_14406371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|419899550|ref|ZP_14419053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|419906599|ref|ZP_14425489.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|419914745|ref|ZP_14433133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|419920343|ref|ZP_14438461.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|419931193|ref|ZP_14448781.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|419939154|ref|ZP_14455955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|419947494|ref|ZP_14463840.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|419950859|ref|ZP_14467064.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|420105077|ref|ZP_14615658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|420111510|ref|ZP_14621341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|420113629|ref|ZP_14623350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|420119922|ref|ZP_14629165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|420124623|ref|ZP_14633470.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|420134514|ref|ZP_14642619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|420326674|ref|ZP_14828425.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|420337236|ref|ZP_14838802.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|420348433|ref|ZP_14849819.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|420353933|ref|ZP_14855033.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|420359717|ref|ZP_14860687.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|420363922|ref|ZP_14864805.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|420381539|ref|ZP_14880986.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|420386570|ref|ZP_14885919.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|420392263|ref|ZP_14891514.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|421683601|ref|ZP_16123394.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|421774685|ref|ZP_16211297.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|422333549|ref|ZP_16414559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|422351899|ref|ZP_16432704.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|422358132|ref|ZP_16438793.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|422367766|ref|ZP_16448192.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|422377482|ref|ZP_16457721.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|422380266|ref|ZP_16460445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|422752155|ref|ZP_16806059.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|422755899|ref|ZP_16809723.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|422761951|ref|ZP_16815708.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|422767166|ref|ZP_16820893.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|422771579|ref|ZP_16825268.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|422777776|ref|ZP_16831428.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|422780582|ref|ZP_16833367.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|422787134|ref|ZP_16839873.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|422792447|ref|ZP_16845147.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|422799830|ref|ZP_16848329.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|422819331|ref|ZP_16867542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|422830004|ref|ZP_16878166.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|422835597|ref|ZP_16883651.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|422837412|ref|ZP_16885385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|422972902|ref|ZP_16975514.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|422988643|ref|ZP_16979416.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|422995535|ref|ZP_16986299.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|423000680|ref|ZP_16991434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|423004352|ref|ZP_16995098.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|423010852|ref|ZP_17001586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|423020080|ref|ZP_17010789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|423025246|ref|ZP_17015943.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|423031066|ref|ZP_17021754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|423038892|ref|ZP_17029566.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044012|ref|ZP_17034679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045740|ref|ZP_17036400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054279|ref|ZP_17043086.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061254|ref|ZP_17050050.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423704104|ref|ZP_17678529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|423706637|ref|ZP_17681020.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|424754455|ref|ZP_18182369.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424764628|ref|ZP_18192047.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|425115994|ref|ZP_18517793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|425120759|ref|ZP_18522455.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|425273667|ref|ZP_18665078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|425278918|ref|ZP_18670156.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|425284212|ref|ZP_18675250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|425289655|ref|ZP_18680495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|425301372|ref|ZP_18691263.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|425306247|ref|ZP_18695949.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|425380693|ref|ZP_18764710.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|425423361|ref|ZP_18804529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|427805698|ref|ZP_18972765.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|427810194|ref|ZP_18977259.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|429720107|ref|ZP_19255036.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772008|ref|ZP_19304029.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429776953|ref|ZP_19308929.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785680|ref|ZP_19317576.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429791570|ref|ZP_19323425.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429792418|ref|ZP_19324268.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429798994|ref|ZP_19330793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429807507|ref|ZP_19339232.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429812407|ref|ZP_19344091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429817928|ref|ZP_19349567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429823140|ref|ZP_19354735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429904515|ref|ZP_19370494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908653|ref|ZP_19374617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914524|ref|ZP_19380472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919554|ref|ZP_19385486.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925374|ref|ZP_19391288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929311|ref|ZP_19395213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935850|ref|ZP_19401736.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941530|ref|ZP_19407404.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944210|ref|ZP_19410073.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951769|ref|ZP_19417615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955118|ref|ZP_19420950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432358858|ref|ZP_19602078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|432363616|ref|ZP_19606780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|432370740|ref|ZP_19613825.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|432377727|ref|ZP_19620716.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|432382212|ref|ZP_19625155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|432388027|ref|ZP_19630914.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|432393029|ref|ZP_19635859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|432398473|ref|ZP_19641252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|432407598|ref|ZP_19650306.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|432417998|ref|ZP_19660596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|432422869|ref|ZP_19665413.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|432441983|ref|ZP_19684323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|432447089|ref|ZP_19689388.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|432450649|ref|ZP_19692911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|432466706|ref|ZP_19708793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|432471844|ref|ZP_19713888.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|432481867|ref|ZP_19723822.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|432486299|ref|ZP_19728214.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|432490285|ref|ZP_19732154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|432501009|ref|ZP_19742766.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|432514823|ref|ZP_19752045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|432527279|ref|ZP_19764371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|432544102|ref|ZP_19780944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|432549593|ref|ZP_19786359.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|432554564|ref|ZP_19791285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|432559732|ref|ZP_19796401.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|432564807|ref|ZP_19801387.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|432574617|ref|ZP_19811095.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|432576780|ref|ZP_19813237.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|432584732|ref|ZP_19821124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|432588799|ref|ZP_19825155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|432598523|ref|ZP_19834797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|432603148|ref|ZP_19839392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|432612382|ref|ZP_19848544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|432617659|ref|ZP_19853772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|432622748|ref|ZP_19858776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|432628141|ref|ZP_19864117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|432637759|ref|ZP_19873628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|432647045|ref|ZP_19882834.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|432656680|ref|ZP_19892383.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|432661728|ref|ZP_19897368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|432671622|ref|ZP_19907150.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|432675641|ref|ZP_19911097.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|432681127|ref|ZP_19916500.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|432686343|ref|ZP_19921638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|432692465|ref|ZP_19927692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|432695336|ref|ZP_19930534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|432699951|ref|ZP_19935104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|432705295|ref|ZP_19940394.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|432711537|ref|ZP_19946595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|432714257|ref|ZP_19949294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|432719665|ref|ZP_19954633.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|432723993|ref|ZP_19958910.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|432728574|ref|ZP_19963452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|432733259|ref|ZP_19968088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|432738008|ref|ZP_19972765.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|432742258|ref|ZP_19976977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|432746516|ref|ZP_19981181.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|432750966|ref|ZP_19985568.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|432755351|ref|ZP_19989899.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|432760341|ref|ZP_19994835.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|432765875|ref|ZP_20000313.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|432771469|ref|ZP_20005794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|432779421|ref|ZP_20013654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|432788423|ref|ZP_20022553.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|432793708|ref|ZP_20027792.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|432799667|ref|ZP_20033688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|432802712|ref|ZP_20036681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|432806697|ref|ZP_20040625.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|432810186|ref|ZP_20044079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|432816244|ref|ZP_20050027.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|432821869|ref|ZP_20055560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|432828007|ref|ZP_20061656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|432832574|ref|ZP_20066146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|432840309|ref|ZP_20073774.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|432852175|ref|ZP_20082217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|432869853|ref|ZP_20090446.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|432876262|ref|ZP_20094302.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|432895491|ref|ZP_20107211.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|432899594|ref|ZP_20110183.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|432905846|ref|ZP_20114646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|432920496|ref|ZP_20124131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|432928093|ref|ZP_20129346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|432935414|ref|ZP_20134768.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|432938859|ref|ZP_20137102.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|432948364|ref|ZP_20143520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|432956071|ref|ZP_20147890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|432962782|ref|ZP_20152314.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|432968596|ref|ZP_20157510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|432972676|ref|ZP_20161542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|432981896|ref|ZP_20170671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|432986233|ref|ZP_20174954.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|432991624|ref|ZP_20180288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|433005980|ref|ZP_20194408.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|433008576|ref|ZP_20196992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|433014799|ref|ZP_20203141.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|433024371|ref|ZP_20212352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|433029455|ref|ZP_20217311.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|433034343|ref|ZP_20222052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|433039522|ref|ZP_20227120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|433044069|ref|ZP_20231563.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|433048933|ref|ZP_20236280.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|433063957|ref|ZP_20250876.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|433073746|ref|ZP_20260397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|433078697|ref|ZP_20265225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|433083431|ref|ZP_20269887.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|433092891|ref|ZP_20279155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|433097338|ref|ZP_20283521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|433102057|ref|ZP_20288137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|433106782|ref|ZP_20292754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|433111758|ref|ZP_20297619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|433121076|ref|ZP_20306746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|433131059|ref|ZP_20316494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|433135727|ref|ZP_20321068.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|433145120|ref|ZP_20330261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|433154598|ref|ZP_20339536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|433164411|ref|ZP_20349146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|433169485|ref|ZP_20354110.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|433174419|ref|ZP_20358941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|433184221|ref|ZP_20368466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|433189257|ref|ZP_20373354.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|433194574|ref|ZP_20378560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|433199174|ref|ZP_20383071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|433204186|ref|ZP_20387953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|433322937|ref|ZP_20400326.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|442592524|ref|ZP_21010499.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442599048|ref|ZP_21016783.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443618572|ref|YP_007382428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|450191399|ref|ZP_21891208.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
gi|450219669|ref|ZP_21896211.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|450246570|ref|ZP_21901007.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|549552|sp|P36979.1|RLMN_ECOLI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123084401|sp|Q1R8L6.1|RLMN_ECOUT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123147826|sp|Q0TEW8.1|RLMN_ECOL5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123728531|sp|Q32D45.1|RLMN_SHIDS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123755559|sp|Q31XX3.1|RLMN_SHIBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123773477|sp|Q3YZ35.1|RLMN_SHISS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829749|sp|A7ZPW0.1|RLMN_ECO24 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829750|sp|B1XAZ2.1|RLMN_ECODH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829752|sp|A1AE55.1|RLMN_ECOK1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829753|sp|B1IWE4.1|RLMN_ECOLC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829754|sp|B1LNH2.1|RLMN_ECOSM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829888|sp|B2TXU2.1|RLMN_SHIB3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807172|sp|B7UGW3.1|RLMN_ECO27 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807173|sp|B7MI02.1|RLMN_ECO45 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807174|sp|B7LDA9.1|RLMN_ECO55 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807176|sp|B7NRG7.1|RLMN_ECO7I RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807177|sp|B7N304.1|RLMN_ECO81 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807178|sp|B7M7M1.1|RLMN_ECO8A RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807180|sp|B6I589.1|RLMN_ECOSE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|259491986|sp|C4ZX92.1|RLMN_ECOBW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
gi|1788865|gb|AAC75570.1| dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37
methyltransferase, SAM-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
[Escherichia coli 536]
gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|333970625|gb|AEG37430.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|338769630|gb|EGP24409.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|339416064|gb|AEJ57736.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|340733456|gb|EGR62587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|340739363|gb|EGR73598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|341916433|gb|EGT66050.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|342364541|gb|EGU28641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|342930490|gb|EGU99212.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|344194583|gb|EGV48656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|345337791|gb|EGW70223.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|345350837|gb|EGW83112.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|345352349|gb|EGW84598.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|345362177|gb|EGW94334.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|345372563|gb|EGX04527.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|345375815|gb|EGX07762.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|345377433|gb|EGX09365.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|345387029|gb|EGX16858.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|345393272|gb|EGX23050.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|349738991|gb|AEQ13697.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|354862370|gb|EHF22808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|354867654|gb|EHF28076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|354868755|gb|EHF29168.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|354873651|gb|EHF34028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|354880335|gb|EHF40671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|354889124|gb|EHF49377.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|354893354|gb|EHF53558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|354894305|gb|EHF54501.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354897097|gb|EHF57258.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|354898461|gb|EHF58615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354912229|gb|EHF72230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354915185|gb|EHF75165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354917419|gb|EHF77385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355350895|gb|EHG00090.1| methyltransferase [Escherichia coli cloneA_i1]
gi|359332826|dbj|BAL39273.1| predicted enzyme [Escherichia coli str. K-12 substr. MDS42]
gi|371597535|gb|EHN86356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|371607191|gb|EHN95769.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|371612209|gb|EHO00725.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|371615228|gb|EHO03656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|373245520|gb|EHP64988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|375322871|gb|EHS68604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|377843421|gb|EHU08461.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|377844272|gb|EHU09309.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|377846674|gb|EHU11681.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|377856396|gb|EHU21256.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|377859449|gb|EHU24280.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|377863730|gb|EHU28535.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|377873348|gb|EHU37985.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|377876983|gb|EHU41581.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|377879635|gb|EHU44207.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|377890709|gb|EHU55166.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|377992410|gb|EHV55557.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|377993980|gb|EHV57111.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|377995849|gb|EHV58960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|378007548|gb|EHV70517.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|378009772|gb|EHV72726.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|378015230|gb|EHV78127.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|378023450|gb|EHV86127.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|378029256|gb|EHV91872.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|378032120|gb|EHV94702.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|378037916|gb|EHW00438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|378053442|gb|EHW15742.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|378060798|gb|EHW22986.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|378073270|gb|EHW35323.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|378076654|gb|EHW38658.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|378083924|gb|EHW45855.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|378090298|gb|EHW52138.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|378094148|gb|EHW55950.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|378099465|gb|EHW61171.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|378104989|gb|EHW66637.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|378110904|gb|EHW72498.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|378116237|gb|EHW77770.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|378127751|gb|EHW89139.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|378130246|gb|EHW91616.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|378130561|gb|EHW91925.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|378140564|gb|EHX01787.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|378148345|gb|EHX09485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|378150850|gb|EHX11965.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|378158000|gb|EHX19031.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|378165033|gb|EHX25974.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|378168501|gb|EHX29405.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|378170262|gb|EHX31148.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|378181011|gb|EHX41688.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|378185612|gb|EHX46237.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|378187867|gb|EHX48478.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|378199885|gb|EHX60344.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|378200309|gb|EHX60765.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|378202788|gb|EHX63215.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|378212344|gb|EHX72667.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|378217595|gb|EHX77874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|378219173|gb|EHX79442.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|378227429|gb|EHX87601.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|378231657|gb|EHX91768.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|378236829|gb|EHX96868.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|378243741|gb|EHY03687.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|378247496|gb|EHY07415.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|378254460|gb|EHY14324.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|378259103|gb|EHY18919.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|380347562|gb|EIA35849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|383103950|gb|AFG41459.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|383392064|gb|AFH17022.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|383406099|gb|AFH12342.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|383475446|gb|EID67406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|384379757|gb|EIE37624.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|384473440|gb|EIE57481.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|385156948|gb|EIF18942.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|385537110|gb|EIF83993.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|385707220|gb|EIG44252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|385711602|gb|EIG48560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|386121723|gb|EIG70338.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386140612|gb|EIG81764.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|386153186|gb|EIH04475.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|386156104|gb|EIH12451.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|386163844|gb|EIH25639.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|386168554|gb|EIH35070.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|386172778|gb|EIH44792.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|386178012|gb|EIH55491.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|386183133|gb|EIH65884.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|386201787|gb|EII00778.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|386204145|gb|EII08656.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|386213730|gb|EII24155.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|386218741|gb|EII35224.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|386224810|gb|EII47145.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|386227812|gb|EII55168.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|386236391|gb|EII68367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|386239173|gb|EII76107.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|386245149|gb|EII86879.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|386249965|gb|EII96134.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|386252944|gb|EIJ02634.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|386256702|gb|EIJ12196.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|388333720|gb|EIL00337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|388334450|gb|EIL01041.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|388336172|gb|EIL02719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|388348459|gb|EIL14054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|388378693|gb|EIL41407.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|388379687|gb|EIL42334.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|388384875|gb|EIL46581.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|388385715|gb|EIL47386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|388398928|gb|EIL59739.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|388408645|gb|EIL68986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|388410502|gb|EIL70726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|388415965|gb|EIL75872.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|391250191|gb|EIQ09414.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|391260114|gb|EIQ19179.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|391268909|gb|EIQ27828.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|391277266|gb|EIQ36016.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|391281287|gb|EIQ39939.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|391283880|gb|EIQ42489.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|391293585|gb|EIQ51844.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|391299858|gb|EIQ57797.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|391304857|gb|EIQ62659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|391312030|gb|EIQ69653.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|394396699|gb|EJE73031.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|394398243|gb|EJE74431.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|394400229|gb|EJE76165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|394411219|gb|EJE85490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|394421284|gb|EJE94760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|394430590|gb|EJF02904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|397785065|gb|EJK95918.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|397899130|gb|EJL15506.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|404337957|gb|EJZ64405.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|406776653|gb|AFS56077.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053222|gb|AFS73273.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407066448|gb|AFS87495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|408192944|gb|EKI18503.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|408200543|gb|EKI25720.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|408201389|gb|EKI26544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|408212764|gb|EKI37277.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|408213030|gb|EKI37534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|408227879|gb|EKI51448.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|408295564|gb|EKJ13869.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|408343253|gb|EKJ57657.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|408460433|gb|EKJ84212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|408567706|gb|EKK43760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|408568509|gb|EKK44540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|412963880|emb|CCK47806.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|412970373|emb|CCJ45019.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|421933102|gb|EKT90896.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|421937594|gb|EKT95203.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|429348258|gb|EKY85028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429359004|gb|EKY95670.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429361335|gb|EKY97990.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429361642|gb|EKY98295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429364282|gb|EKZ00902.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429375131|gb|EKZ11669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429376288|gb|EKZ12817.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429378597|gb|EKZ15105.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429379461|gb|EKZ15961.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429391164|gb|EKZ27569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429405528|gb|EKZ41794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429406064|gb|EKZ42325.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409969|gb|EKZ46194.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413881|gb|EKZ50061.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429420659|gb|EKZ56784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429428831|gb|EKZ64906.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429432384|gb|EKZ68424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429436590|gb|EKZ72606.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429438795|gb|EKZ74788.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429447164|gb|EKZ83088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429451417|gb|EKZ87308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429458075|gb|EKZ93913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430876278|gb|ELB99797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|430884544|gb|ELC07483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|430885821|gb|ELC08691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|430897747|gb|ELC19941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|430905530|gb|ELC27139.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|430907687|gb|ELC29185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|430914721|gb|ELC35816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|430918185|gb|ELC39224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|430929072|gb|ELC49593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|430938103|gb|ELC58346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|430943605|gb|ELC63712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|430966437|gb|ELC83845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|430973362|gb|ELC90330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|430979141|gb|ELC95927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|430992989|gb|ELD09348.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|430997586|gb|ELD13847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|431006389|gb|ELD21395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|431015508|gb|ELD29063.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|431019737|gb|ELD33131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|431028586|gb|ELD41630.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|431041209|gb|ELD51740.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|431063099|gb|ELD72356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|431073852|gb|ELD81490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|431079225|gb|ELD86195.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|431083229|gb|ELD89536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|431090952|gb|ELD96703.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|431092778|gb|ELD98459.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|431107064|gb|ELE11252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|431114454|gb|ELE17996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|431115486|gb|ELE18989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|431121132|gb|ELE24130.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|431130036|gb|ELE32145.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|431141722|gb|ELE43487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|431148556|gb|ELE49847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|431153647|gb|ELE54551.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|431158408|gb|ELE59007.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|431162752|gb|ELE63193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|431170499|gb|ELE70692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|431179700|gb|ELE79592.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|431190546|gb|ELE89945.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|431198687|gb|ELE97470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|431209904|gb|ELF07971.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|431213448|gb|ELF11322.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|431219857|gb|ELF17246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|431221063|gb|ELF18385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|431226395|gb|ELF23560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|431233424|gb|ELF29015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|431242177|gb|ELF36598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|431242927|gb|ELF37317.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|431248489|gb|ELF42683.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|431256107|gb|ELF49184.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|431261858|gb|ELF53881.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|431264585|gb|ELF56290.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|431273126|gb|ELF64224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|431274468|gb|ELF65525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|431281797|gb|ELF72696.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|431283949|gb|ELF74808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|431291054|gb|ELF81577.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|431295984|gb|ELF85714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|431301781|gb|ELF90982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|431307995|gb|ELF96285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|431310050|gb|ELF98243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|431313935|gb|ELG01890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|431326237|gb|ELG13599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|431336618|gb|ELG23726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|431339371|gb|ELG26433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|431342775|gb|ELG29746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|431347854|gb|ELG34731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|431354839|gb|ELG41565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|431362954|gb|ELG49532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|431363659|gb|ELG50212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|431367521|gb|ELG53998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|431371495|gb|ELG57204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|431374852|gb|ELG60197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|431388343|gb|ELG72079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|431399431|gb|ELG82838.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|431410439|gb|ELG93601.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|431419784|gb|ELH02124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|431421858|gb|ELH04070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|431425723|gb|ELH07791.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|431431917|gb|ELH13691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|431441698|gb|ELH22806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|431443058|gb|ELH24136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|431452197|gb|ELH32646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|431458342|gb|ELH38679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|431462845|gb|ELH43052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|431466922|gb|ELH46938.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|431470012|gb|ELH49936.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|431472656|gb|ELH52543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|431480814|gb|ELH60530.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|431491205|gb|ELH70812.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|431495706|gb|ELH75292.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|431499127|gb|ELH78308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|431513678|gb|ELH91760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|431523191|gb|ELI00335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|431529785|gb|ELI06480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|431534432|gb|ELI10915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|431542507|gb|ELI17674.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|431549735|gb|ELI23811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|431550634|gb|ELI24623.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|431555375|gb|ELI29217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|431563710|gb|ELI36908.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|431580743|gb|ELI53300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|431587114|gb|ELI58495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|431595821|gb|ELI65808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|431601555|gb|ELI71071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|431609574|gb|ELI78891.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|431614919|gb|ELI84053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|431618336|gb|ELI87310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|431626490|gb|ELI95039.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|431627501|gb|ELI95903.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|431641776|gb|ELJ09510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|431645856|gb|ELJ13400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|431655655|gb|ELJ22686.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|431660749|gb|ELJ27612.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|431673120|gb|ELJ39350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|431686686|gb|ELJ52246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|431686833|gb|ELJ52389.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|431691631|gb|ELJ57089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|431705174|gb|ELJ69772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|431705318|gb|ELJ69915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|431715074|gb|ELJ79243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|431720133|gb|ELJ84167.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|431720559|gb|ELJ84586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|432348510|gb|ELL42960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|441607795|emb|CCP95946.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441652218|emb|CCQ02280.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443423080|gb|AGC87984.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|449316974|gb|EMD07070.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|449319217|gb|EMD09272.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|449319546|gb|EMD09595.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|427799644|ref|ZP_18967554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|414064192|gb|EKT45183.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAVKVPGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|406927611|gb|EKD63617.1| hypothetical protein ACD_51C00246G0004 [uncultured bacterium]
Length = 340
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 150/306 (49%), Gaps = 69/306 (22%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIF-----RTVTAADGTV-KLLIKLE-DNRLIETVGIPVED 105
+P + R+ L E LPI ++ A DG+V K+L + + D + IE V + +D
Sbjct: 42 LPVTLRDYLNE------NLPILSIEEKQSSVAVDGSVRKVLFRCKKDGKKIEAVLMRFKD 95
Query: 106 EKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTN 162
R T CVSSQVGC + CSFCATGK GF RNL+ EI QVL + ++N
Sbjct: 96 G----RRTVCVSSQVGCAMGCSFCATGKMGFKRNLTYEEISDQVLYFASDIRSYGETISN 151
Query: 163 VVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA 220
VVFMGMGEP N +V+ A R LN + + IG R IT+ST GV I KL LQ LA
Sbjct: 152 VVFMGMGEPFNNYDNVMRAVRFLNDARGLNIGARNITLSTSGVVPGILKLMDDGLQVNLA 211
Query: 221 IR---------------------------------------------SAGVNDQVEHAVE 235
I AGVND + A +
Sbjct: 212 ISLHAPNQELRESMMPVAKKYGLDELMDAVTKYTNKTHRRVSYEYVMIAGVNDDLSLAHQ 271
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
L L+ G+ HVNLIP+N +G+ ++R + + F LE++++ T+IR + G D
Sbjct: 272 LGNLIE--GQLCHVNLIPYNLTDGNKFKRSLNRKMDDFVKILETYRVPTTIRVSLGQDID 329
Query: 296 AACGQL 301
AACGQL
Sbjct: 330 AACGQL 335
>gi|420496342|ref|ZP_14994905.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-23]
gi|393110400|gb|EJC10925.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-23]
Length = 357
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|422026819|ref|ZP_16373193.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
gi|414016811|gb|EKT00570.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 140/279 (50%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVL-------AIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV A++ + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAVKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSTSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|452123647|ref|YP_007473895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
gi|451912651|gb|AGF84457.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|417351020|ref|ZP_12128956.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|418512885|ref|ZP_13079121.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
gi|353569453|gb|EHC34017.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|366083097|gb|EHN47025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|348590089|ref|YP_004874551.1| ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
gi|347973993|gb|AEP36528.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
Length = 380
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 159/341 (46%), Gaps = 72/341 (21%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKL 86
P R +Q W + G S + FR+ L E ++V P + ++DGT+K
Sbjct: 28 PFRAKQLINWIHQKGKSDFSNMTN-LANDFRSHLTE--YSVIATPKVITKQVSSDGTIKW 84
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L +++N IETV IP ED++G T C+SSQ GC + C FC+TG GF+RNLS+ EI+
Sbjct: 85 LFDVQNNNAIETVYIP-EDDRG----TLCISSQAGCTVACRFCSTGHQGFNRNLSTSEII 139
Query: 147 GQV-LAIEEIFK-------------HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG 192
GQV A +EI K +TNVVFMGMGEP+LN VL A + L G
Sbjct: 140 GQVWWARDEIKKSLNTDSGFEAEDDRVITNVVFMGMGEPLLNYDQVLPAIKLLIDQNAYG 199
Query: 193 --QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA--- 220
+R +T+ST GV + KL+ Y L+ +
Sbjct: 200 LSKRRVTVSTSGVIPFMDKLSQDCPVALAVSLHAPNDELRDQLIPLNKKYPLRELMDACN 259
Query: 221 ---------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
I GVND HA +L ++ E VNLIPFNP S +R
Sbjct: 260 RYIDFAPRDFITFEYIMLDGVNDTDAHAKQLIDICRE--VKSKVNLIPFNPFPESGLRRS 317
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306
+ V AF+ L I + R+TRG D AACGQL + +
Sbjct: 318 SHERVRAFSAILNGAGIVATTRKTRGDDIDAACGQLAGDIK 358
>gi|437838913|ref|ZP_20846081.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
gi|435298122|gb|ELO74366.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
Length = 347
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 51 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 104
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 105 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 164
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 165 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 224
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 225 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 282
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 283 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 321
>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|374981957|ref|ZP_09723279.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378445942|ref|YP_005233574.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378451265|ref|YP_005238624.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700426|ref|YP_005182383.1| hypothetical protein SL1344_2487 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378985084|ref|YP_005248239.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378989905|ref|YP_005253069.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|379701754|ref|YP_005243482.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497213|ref|YP_005397902.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|417540943|ref|ZP_12192814.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|81594911|sp|Q8ZN52.1|RLMN_SALTY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|353661724|gb|EHD00962.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|380464034|gb|AFD59437.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|366160142|ref|ZP_09460004.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
TW09308]
gi|432373144|ref|ZP_19616182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
gi|430895150|gb|ELC17421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|417335554|ref|ZP_12118355.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|417532885|ref|ZP_12187111.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
gi|353571081|gb|EHC35147.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|353661789|gb|EHD00996.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
Length = 354
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 58 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 111
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 112 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 171
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 172 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 231
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 232 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 289
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 290 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 328
>gi|333892268|ref|YP_004466143.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
SN2]
gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
SN2]
Length = 372
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/279 (35%), Positives = 138/279 (49%), Gaps = 63/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +ETV IP D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 74 ASDGTIKFALALEGGQEVETVWIPEAD-----RATLCVSSQVGCALECTFCSTAQQGFNR 128
Query: 139 NLSSHEIVGQVLAI-------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NLS EI+GQV + ++ K +TNVV MGMGEP+LNLK+V+ A + D
Sbjct: 129 NLSVSEIIGQVWRVATFLGLSKDTSKRPITNVVMMGMGEPLLNLKNVVPAMNIMLDDFGF 188
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + L Y +++ LA
Sbjct: 189 GLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPNDELRNEIVPVNKKYNIEAFLAGV 248
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ + +ND + A ELA++L + +NLIPFNP GS Y
Sbjct: 249 RRYLEKSKANQGRVTVEYVMLSHINDSTDQAHELAKVLKD--TPCKINLIPFNPYPGSPY 306
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ F+ L + TT +R+TRG D AACGQL
Sbjct: 307 LCSSNSRIDRFSKVLMDYGFTTVVRKTRGDDIDAACGQL 345
>gi|386820071|ref|ZP_10107287.1| 23S rRNA m2A2503 methyltransferase [Joostella marina DSM 19592]
gi|386425177|gb|EIJ39007.1| 23S rRNA m2A2503 methyltransferase [Joostella marina DSM 19592]
Length = 346
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 144/293 (49%), Gaps = 54/293 (18%)
Query: 61 LQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 120
+ E + + + + + + DGT+K ++L D+ ++E+V IP R TACVSSQV
Sbjct: 58 MLEDNFVINHIKVDQMQRSNDGTIKNAVRLHDDLIVESVLIPTAS-----RTTACVSSQV 112
Query: 121 GCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLK 176
GC L C FCAT K RNL+ EI QV+AI+ F ++N+VFMGMGEP++N
Sbjct: 113 GCSLDCKFCATAKLKRMRNLNPDEIYDQVVAIDNESRLYFDKPLSNIVFMGMGEPLMNYN 172
Query: 177 SVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV 234
+VL A + +G R IT+ST GVP IKK+A +++ LA+ D+V ++
Sbjct: 173 NVLAAIEKITSPEGLGMSPRRITVSTSGVPKMIKKMADTEVKFKLAVSLHSAIDEVRTSI 232
Query: 235 ----------ELAELLHEWG--------------RG-------------------HHVNL 251
+L E L W RG VN+
Sbjct: 233 MPFNATFPLADLREALQYWYDKTKSRITYEYVVWRGINDTRKDADALVKFCKFAPSKVNI 292
Query: 252 IPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
I +NPI + + A+ + LE + IT ++R++RG D AACGQL N+
Sbjct: 293 IEYNPIGDEVFNQADTSAIEMYQQILERNGITVTVRRSRGKDIDAACGQLANK 345
>gi|317482872|ref|ZP_07941880.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
gi|419848065|ref|ZP_14371191.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 1-6B]
gi|419856052|ref|ZP_14378795.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 44B]
gi|291516841|emb|CBK70457.1| 23S rRNA m(2)A-2503 methyltransferase [Bifidobacterium longum
subsp. longum F8]
gi|316915717|gb|EFV37131.1| cfr family radical SAM enzyme [Bifidobacterium sp. 12_1_47BFAA]
gi|386408743|gb|EIJ23635.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 1-6B]
gi|386414340|gb|EIJ28899.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 44B]
Length = 389
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMDCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTKQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|167747880|ref|ZP_02420007.1| hypothetical protein ANACAC_02609 [Anaerostipes caccae DSM 14662]
gi|167652702|gb|EDR96831.1| 23S rRNA m2A2503 methyltransferase [Anaerostipes caccae DSM 14662]
Length = 354
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 157/339 (46%), Gaps = 61/339 (17%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
R +Q W H R +S +P++ + LQE + V+ DGT K L
Sbjct: 25 RAKQIFEWFHKRLASSLDE--MNNLPKNLKEKLQEKYEAAELKEVETYVSRIDGTRKYLF 82
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
+L D IE+V + + + C+SSQ GC + C FCA+ GG RNL E++GQ
Sbjct: 83 QLNDGNTIESVLMKYKHGN-----SVCISSQAGCRMGCRFCASTLGGLDRNLLPSEMLGQ 137
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNT 206
+ I++ RV+NVV MG GEP+ N +++L R L K + + QR +T+ST G+
Sbjct: 138 IYYIQKDTGERVSNVVVMGTGEPLDNYENLLRFIRLLTDEKGLNLSQRNLTVSTCGLVPK 197
Query: 207 IKKLASYKLQSTLAIR-------------------------------------------- 222
I++LA KLQ TLAI
Sbjct: 198 IRELADEKLQMTLAISLHASNDEMRKSLMPVANQYSMEDLLAACKYYFDRTGRRITFEYS 257
Query: 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
A VND ++A EL L G HVNLIP NPI+ D+++ + V F LE ++
Sbjct: 258 LVAEVNDSPQNAKELCRFL--GGFPCHVNLIPVNPIKERDFRQSMPEFVNDFKNILEKNR 315
Query: 282 ITTSIRQTRGLDASAACGQLR----NEFQKSPLRIDSSN 316
+ +IR+ G D +AACGQLR N +K +R N
Sbjct: 316 VNVTIRREMGRDINAACGQLRRKKLNSVEKQEIRTKKEN 354
>gi|117619957|ref|YP_856292.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|205829708|sp|A0KJ41.1|RLMN_AERHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 367
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 140/283 (49%), Gaps = 59/283 (20%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R ++DGT+K +++ + +ETV IP ED R T CVSSQVGC L C FC+T
Sbjct: 70 VSREQRSSDGTIKWALQV-GGQEVETVYIPEED-----RATLCVSSQVGCALECKFCSTA 123
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
+ GF+RNL EI+GQV +I K +TNVV MGMGEP+LNL +V+ A R + D
Sbjct: 124 QQGFNRNLKVSEIIGQVWRAAKIVGGKRPITNVVMMGMGEPLLNLANVVPAMRLMMDDFG 183
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +TIST GV + L Y ++ LA
Sbjct: 184 YGISKRRVTISTSGVVPALDMLGDQIDVALAISLHAPNDKLRSEIMPINDKYNIEEFLAG 243
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ +ND ++HA ELA++L + +NLIPFNP G+
Sbjct: 244 VRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD--TPSKINLIPFNPFPGNP 301
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
Y +P + F+ L + T +R+TRG D AACGQL E
Sbjct: 302 YGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLVGE 344
>gi|424772058|ref|ZP_18199173.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
gi|421939046|gb|EKT96577.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 136/280 (48%), Gaps = 66/280 (23%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLASYKLQSTLAIRSAG------------------------ 225
G +R +T+ST GV + KL Y + LAI
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLG-YMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGA 264
Query: 226 ------------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
VND EHA +LAELL E +NLIP+NP G+
Sbjct: 265 VRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAP 322
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
Y R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 323 YGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:- str.
RSK2980]
gi|205829874|sp|A9MHL3.1|RLMN_SALAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
Length = 364
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 159/337 (47%), Gaps = 62/337 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W + G +++ + +S R LQE VG + + DGT K L
Sbjct: 24 PFRAKQVMRW-IHQGGAESFDEMTDLAKSLRAKLQEKA-VVGIPVLMAAQESRDGTRKWL 81
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ + +ETV IP E E+G T C+SSQVGC L C+FC+TG+ GF+RNL++ EI+G
Sbjct: 82 LDVGTGNGVETVFIP-ETERG----TLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIG 136
Query: 148 QV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIS 199
Q+ L + + ++NVV MGMGEPM N +V+ A + D G +R +T+S
Sbjct: 137 QLWWANKALGVTPKNERVISNVVMMGMGEPMANYDNVVTALSIMLDDHGYGLSRRRVTVS 196
Query: 200 TVGVPNTIKKLAS---------------------------YKLQSTLA------------ 220
T G+ + +L Y L+ +A
Sbjct: 197 TSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLTKAPRD 256
Query: 221 ------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
+ GVND+ EHA EL +L+ + NLIPFNP S Y+R K + F
Sbjct: 257 FITFEYVMLDGVNDKPEHAHELVQLVKD--TPCKFNLIPFNPFPNSGYERSSNKNINIFK 314
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
L + T++R+TRG D AACGQL + Q R
Sbjct: 315 EILMEAGLVTTVRKTRGDDIDAACGQLAGQVQDKTKR 351
>gi|386815051|ref|ZP_10102269.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
gi|386419627|gb|EIJ33462.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
Length = 409
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 143/291 (49%), Gaps = 63/291 (21%)
Query: 67 TVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLR 125
TV R P I +ADGT K L++L+D IETV IP ED++G T CVSSQVGC L
Sbjct: 106 TVIRAPQIIMDQHSADGTHKWLLRLDDGNAIETVFIP-EDDRG----TLCVSSQVGCALD 160
Query: 126 CSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR------VTNVVFMGMGEPMLNLKSVL 179
C+FC+T + GF+RNL++ EI+GQ+ + + ++NVV MGMGEP+LN +V
Sbjct: 161 CTFCSTARQGFNRNLTTAEIIGQLWVAKRTLQADPGGARVISNVVMMGMGEPLLNFDNVA 220
Query: 180 EAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS------------------------- 212
A + D G +R +T+ST GV + +LA
Sbjct: 221 NALMLMMDDNAYGLSKRRVTLSTSGVLPALARLADTMDVSLAVSLHAPNNEVRNQLVPLN 280
Query: 213 --YKLQSTLA--------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVN 250
Y +Q +A + G+ND+ EHA +L +LL G +N
Sbjct: 281 RKYPIQELMAVCRQFLAKKTTERNHITWEYVMLEGINDKDEHAHQLVKLLK--GIPSKIN 338
Query: 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
LIPFNP + Y+R + F L + T R+TRG D AACGQL
Sbjct: 339 LIPFNPFPETRYKRSSNNRIHRFRDILAAAGYTVITRKTRGEDIDAACGQL 389
>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|440765905|ref|ZP_20944916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|440766943|ref|ZP_20945929.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
gi|440773642|ref|ZP_20952535.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|254807201|sp|B5F1A0.1|RLMN_SALA4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|436411112|gb|ELP09066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|436415369|gb|ELP13289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|436421442|gb|ELP19287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
Length = 388
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
Length = 384
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|406941482|gb|EKD73958.1| hypothetical protein ACD_45C00125G0007 [uncultured bacterium]
Length = 368
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/278 (37%), Positives = 136/278 (48%), Gaps = 61/278 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T+ DGT K +++L D IE V IP E +G T CVSSQVGC L C FC+TGK GFS
Sbjct: 79 TSPDGTHKWILRLTDGNCIEAVFIP-EKTRG----TLCVSSQVGCTLNCDFCSTGKQGFS 133
Query: 138 RNLSSHEIVGQV-LAIEEIFK------HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
RNL++ EI+GQV LA+ K H +TNVV MGMGEP+LN ++V+ A + D
Sbjct: 134 RNLTTDEIIGQVWLAVRHFAKNHRVHDHAITNVVMMGMGEPLLNFENVVNAMDIMLDDFA 193
Query: 191 IG--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
G +R +T+ST GV + +L + Y L+ +
Sbjct: 194 YGLSKRRVTLSTAGVVPAMYELRNVSDVALAVSLHAPNDELRNVLVPLNKKYPLKELMTA 253
Query: 221 -----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ AG+ND EHA +L LL+ G VNLIPFNP + YQ
Sbjct: 254 CKEYFKEDKRRYVTMEYVMLAGINDTDEHAQQLIRLLN--GIRAKVNLIPFNPFPNTSYQ 311
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F L I R+TRG AACGQL
Sbjct: 312 RSDAPTIDRFRETLMHAGINAITRKTRGDAIDAACGQL 349
>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
putrefaciens CN-32]
gi|205829884|sp|A4Y8U3.1|RLMN_SHEPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
Length = 373
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 138/290 (47%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K I + + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 STDGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFAKDTGDRPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND E A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMEDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|438030924|ref|ZP_20855304.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
gi|435327567|gb|ELO99234.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
Length = 371
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 75 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 128
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 129 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 188
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 189 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 248
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 249 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 306
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 307 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 345
>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|375002364|ref|ZP_09726704.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|375115433|ref|ZP_09760603.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|375120078|ref|ZP_09765245.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375124474|ref|ZP_09769638.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|378954139|ref|YP_005211626.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378958479|ref|YP_005215965.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|386592330|ref|YP_006088730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|409251192|ref|YP_006886994.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416426049|ref|ZP_11692668.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|416431782|ref|ZP_11695884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|416438159|ref|ZP_11699368.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|416443974|ref|ZP_11703374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|416450747|ref|ZP_11707773.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|416460671|ref|ZP_11714931.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|416471027|ref|ZP_11719080.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|416481236|ref|ZP_11723220.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416493203|ref|ZP_11727876.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|416498355|ref|ZP_11730204.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416506705|ref|ZP_11734847.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|416514798|ref|ZP_11738361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|416530920|ref|ZP_11745334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|416539116|ref|ZP_11749825.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|416546116|ref|ZP_11753671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|416552143|ref|ZP_11756872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|416560905|ref|ZP_11761460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|416571191|ref|ZP_11766523.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|416577256|ref|ZP_11769642.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|416583531|ref|ZP_11773344.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|416591355|ref|ZP_11778359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|416599607|ref|ZP_11783766.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|416603734|ref|ZP_11785595.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|416613829|ref|ZP_11792280.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|416620343|ref|ZP_11795682.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|416628617|ref|ZP_11799739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|416637684|ref|ZP_11803589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|416648943|ref|ZP_11809479.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|416662072|ref|ZP_11815732.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|416666825|ref|ZP_11817795.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|416677344|ref|ZP_11822238.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|416697135|ref|ZP_11828110.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|416707776|ref|ZP_11832816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|416711416|ref|ZP_11835196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|416720590|ref|ZP_11842224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|416722275|ref|ZP_11843268.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|416730102|ref|ZP_11848461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|416738011|ref|ZP_11853109.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|416750297|ref|ZP_11859691.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|416755652|ref|ZP_11862196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|416762658|ref|ZP_11866596.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|416770818|ref|ZP_11872148.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|417328050|ref|ZP_12113296.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|417342964|ref|ZP_12123639.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|417359948|ref|ZP_12134190.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417423420|ref|ZP_12160259.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|417469081|ref|ZP_12165516.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|417512615|ref|ZP_12176894.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|417519799|ref|ZP_12181855.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|418482578|ref|ZP_13051593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|418490208|ref|ZP_13056758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|418493543|ref|ZP_13060007.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|418498467|ref|ZP_13064882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|418504940|ref|ZP_13071292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|418506586|ref|ZP_13072916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|418525948|ref|ZP_13091927.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|418762279|ref|ZP_13318409.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|418766898|ref|ZP_13322969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|418770295|ref|ZP_13326317.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|418775717|ref|ZP_13331669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|418781348|ref|ZP_13337232.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|418782848|ref|ZP_13338703.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|418790860|ref|ZP_13346629.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|418792015|ref|ZP_13347764.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|418799204|ref|ZP_13354872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|418800818|ref|ZP_13356465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|418805483|ref|ZP_13361071.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|418814210|ref|ZP_13369730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|418818907|ref|ZP_13374371.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|418819222|ref|ZP_13374675.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|418830875|ref|ZP_13385834.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|418837560|ref|ZP_13392433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|418841940|ref|ZP_13396754.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|418843034|ref|ZP_13397838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|418850326|ref|ZP_13405043.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|418855649|ref|ZP_13410302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|418859511|ref|ZP_13414114.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|418861742|ref|ZP_13416294.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|418867652|ref|ZP_13422106.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|419729187|ref|ZP_14256147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|419735242|ref|ZP_14262125.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|419737762|ref|ZP_14264533.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|419742615|ref|ZP_14269287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|419751225|ref|ZP_14277649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|419787826|ref|ZP_14313531.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|419795431|ref|ZP_14321030.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|421357046|ref|ZP_15807359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|421361384|ref|ZP_15811648.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|421367137|ref|ZP_15817338.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|421372683|ref|ZP_15822831.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|421375739|ref|ZP_15825851.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|421381055|ref|ZP_15831111.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|421383737|ref|ZP_15833768.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|421388652|ref|ZP_15838640.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|421396299|ref|ZP_15846230.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|421401580|ref|ZP_15851455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|421402018|ref|ZP_15851882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|421408915|ref|ZP_15858712.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|421413709|ref|ZP_15863461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|421415483|ref|ZP_15865209.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|421423620|ref|ZP_15873275.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|421424832|ref|ZP_15874470.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|421429350|ref|ZP_15878947.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|421437194|ref|ZP_15886716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|421437850|ref|ZP_15887360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|421446290|ref|ZP_15895706.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|421449716|ref|ZP_15899098.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|421568827|ref|ZP_16014538.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|421576406|ref|ZP_16022005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|421581147|ref|ZP_16026694.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|421584179|ref|ZP_16029688.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|421884943|ref|ZP_16316147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|436622893|ref|ZP_20514792.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|436778287|ref|ZP_20521095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|436802866|ref|ZP_20525565.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|436811044|ref|ZP_20530040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|436817145|ref|ZP_20534227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|436845491|ref|ZP_20538818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|436853356|ref|ZP_20543316.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|436859555|ref|ZP_20547468.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|436863726|ref|ZP_20550021.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|436868438|ref|ZP_20553198.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|436882806|ref|ZP_20561431.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|436887164|ref|ZP_20563564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|436898919|ref|ZP_20570554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|436901142|ref|ZP_20572066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|436909403|ref|ZP_20576127.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|436921338|ref|ZP_20583741.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|436930031|ref|ZP_20588542.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|436938075|ref|ZP_20592987.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|436945340|ref|ZP_20597494.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|436949504|ref|ZP_20599485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|436960762|ref|ZP_20604399.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|436974665|ref|ZP_20611164.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|436983928|ref|ZP_20614248.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|436991132|ref|ZP_20617311.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|437007433|ref|ZP_20623286.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|437016658|ref|ZP_20626074.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|437033326|ref|ZP_20632520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|437037918|ref|ZP_20634328.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|437049624|ref|ZP_20640216.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|437054922|ref|ZP_20643222.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|437066405|ref|ZP_20649483.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|437072824|ref|ZP_20652666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|437080646|ref|ZP_20657196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|437088891|ref|ZP_20661796.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|437111632|ref|ZP_20668219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|437118552|ref|ZP_20670386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|437133447|ref|ZP_20678420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|437139489|ref|ZP_20681822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|437143581|ref|ZP_20684405.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|437149983|ref|ZP_20688493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|437160241|ref|ZP_20694517.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|437172216|ref|ZP_20701014.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|437180343|ref|ZP_20706066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|437185725|ref|ZP_20709146.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|437206828|ref|ZP_20712554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|437262189|ref|ZP_20718909.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|437270377|ref|ZP_20723173.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|437275158|ref|ZP_20725704.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|437284176|ref|ZP_20729429.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|437315446|ref|ZP_20737135.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|437330767|ref|ZP_20741794.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|437336094|ref|ZP_20742916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|437377383|ref|ZP_20750038.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|437420458|ref|ZP_20754632.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|437439230|ref|ZP_20757170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|437461323|ref|ZP_20762272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|437472192|ref|ZP_20765427.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|437489918|ref|ZP_20770700.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|437510806|ref|ZP_20776884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|437524989|ref|ZP_20779556.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|437549561|ref|ZP_20783360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|437576688|ref|ZP_20790759.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|437593491|ref|ZP_20795424.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|437606102|ref|ZP_20799636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|437613324|ref|ZP_20801508.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|437627613|ref|ZP_20805896.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|437662560|ref|ZP_20813525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|437676523|ref|ZP_20816984.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|437695092|ref|ZP_20822062.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|437713633|ref|ZP_20827513.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|437721442|ref|ZP_20829060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|437793254|ref|ZP_20837334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|437814539|ref|ZP_20842361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|437869053|ref|ZP_20848292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|438100713|ref|ZP_20863980.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|438109166|ref|ZP_20867229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|438131978|ref|ZP_20873745.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|445130531|ref|ZP_21381340.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|445140334|ref|ZP_21384892.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|445150596|ref|ZP_21389812.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|445173607|ref|ZP_21396748.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|445191693|ref|ZP_21399867.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|445232237|ref|ZP_21406008.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|445275224|ref|ZP_21410560.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|445334903|ref|ZP_21415283.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|445344447|ref|ZP_21417623.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|445361962|ref|ZP_21424025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|75481689|sp|Q57LI4.1|RLMN_SALCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81362045|sp|Q5PNI4.1|RLMN_SALPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81628152|sp|Q8Z4P2.1|RLMN_SALTI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829875|sp|A9N1Z8.1|RLMN_SALPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807202|sp|B5FR66.1|RLMN_SALDC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807203|sp|B5R584.1|RLMN_SALEP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807204|sp|B5RCZ4.1|RLMN_SALG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807205|sp|B4TD95.1|RLMN_SALHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807206|sp|B4T0Q1.1|RLMN_SALNS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807207|sp|C0PYM8.1|RLMN_SALPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807208|sp|B5BAY3.1|RLMN_SALPK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807209|sp|B4TR97.1|RLMN_SALSV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|353077052|gb|EHB42812.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353568964|gb|EHC33697.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|353588033|gb|EHC47184.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353618239|gb|EHC68978.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|353628473|gb|EHC76519.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|353639317|gb|EHC84626.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|353645696|gb|EHC89327.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|357204750|gb|AET52796.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357955978|gb|EHJ81597.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|363549922|gb|EHL34253.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|363554248|gb|EHL38484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|363560874|gb|EHL45005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|363564855|gb|EHL48895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|363565051|gb|EHL49089.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|363574248|gb|EHL58117.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|363574434|gb|EHL58302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|366063051|gb|EHN27272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|366064121|gb|EHN28325.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|366066554|gb|EHN30716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|366069326|gb|EHN33450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|366074244|gb|EHN38308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|366082645|gb|EHN46576.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|366829122|gb|EHN56000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|372205935|gb|EHP19440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|374352351|gb|AEZ44112.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|379985477|emb|CCF88420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|381295393|gb|EIC36507.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|381297517|gb|EIC38607.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|381303927|gb|EIC44938.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|381304428|gb|EIC45412.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|381313544|gb|EIC54326.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|383799374|gb|AFH46456.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392612865|gb|EIW95332.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|392618905|gb|EIX01293.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|392736208|gb|EIZ93374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|392737459|gb|EIZ94619.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|392737485|gb|EIZ94643.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|392747279|gb|EJA04278.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|392747593|gb|EJA04589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|392756896|gb|EJA13790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|392758392|gb|EJA15259.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|392764392|gb|EJA21192.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|392769147|gb|EJA25891.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|392772544|gb|EJA29245.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|392783226|gb|EJA39855.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|392784526|gb|EJA41124.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|392785184|gb|EJA41765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|392795144|gb|EJA51525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|392798457|gb|EJA54730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|392800572|gb|EJA56806.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|392807690|gb|EJA63758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|392817806|gb|EJA73708.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|392818939|gb|EJA74818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|392820968|gb|EJA76801.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|392830062|gb|EJA85720.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|392837967|gb|EJA93534.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|392839041|gb|EJA94586.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|395988769|gb|EJH97915.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|395992348|gb|EJI01466.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|395993387|gb|EJI02482.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|395999599|gb|EJI08617.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|396002149|gb|EJI11154.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|396004654|gb|EJI13636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|396009908|gb|EJI18823.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|396019635|gb|EJI28487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|396020974|gb|EJI29807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|396021108|gb|EJI29939.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|396026474|gb|EJI35241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|396033294|gb|EJI42004.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|396036341|gb|EJI45002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|396038850|gb|EJI47484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|396047720|gb|EJI56291.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|396050619|gb|EJI59142.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|396058914|gb|EJI67373.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|396059007|gb|EJI67465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|396063219|gb|EJI71620.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|396069224|gb|EJI77564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|396075023|gb|EJI83300.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|402518296|gb|EJW25681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|402518748|gb|EJW26120.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|402529211|gb|EJW36450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|402531242|gb|EJW38454.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|434941375|gb|ELL47826.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|434956970|gb|ELL50652.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|434960396|gb|ELL53778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|434963652|gb|ELL56733.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|434964575|gb|ELL57573.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|434971594|gb|ELL64097.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|434978460|gb|ELL70493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|434984085|gb|ELL75846.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|434987715|gb|ELL79347.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|434997209|gb|ELL88474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|435003008|gb|ELL94047.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|435004120|gb|ELL95113.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|435011067|gb|ELM01804.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|435013335|gb|ELM03989.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|435021723|gb|ELM12091.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|435025432|gb|ELM15580.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|435028827|gb|ELM18887.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|435032855|gb|ELM22778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|435034526|gb|ELM24395.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|435036118|gb|ELM25940.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|435052573|gb|ELM42064.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|435052668|gb|ELM42156.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|435053258|gb|ELM42711.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|435064571|gb|ELM53698.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|435068655|gb|ELM57666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|435068842|gb|ELM57852.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|435077340|gb|ELM66095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|435082640|gb|ELM71252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|435087918|gb|ELM76391.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|435096068|gb|ELM84342.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|435098301|gb|ELM86544.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|435099270|gb|ELM87481.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|435109508|gb|ELM97455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|435112300|gb|ELN00169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|435116314|gb|ELN04060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|435118041|gb|ELN05722.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|435120677|gb|ELN08242.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|435131377|gb|ELN18590.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|435132088|gb|ELN19289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|435139666|gb|ELN26649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|435145216|gb|ELN32040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|435147167|gb|ELN33946.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|435147658|gb|ELN34415.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|435149135|gb|ELN35848.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|435159276|gb|ELN45628.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|435162114|gb|ELN48310.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|435171108|gb|ELN56751.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|435175081|gb|ELN60509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|435180911|gb|ELN66011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|435186163|gb|ELN71012.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|435189377|gb|ELN74011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|435197810|gb|ELN82066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|435201136|gb|ELN85068.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|435204110|gb|ELN87822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|435206317|gb|ELN89856.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|435212624|gb|ELN95593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|435220381|gb|ELO02678.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|435226424|gb|ELO08002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|435231128|gb|ELO12386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|435231948|gb|ELO13093.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|435243381|gb|ELO23647.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|435246744|gb|ELO26734.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|435248690|gb|ELO28546.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|435251805|gb|ELO31403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|435256371|gb|ELO35680.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|435264579|gb|ELO43491.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|435267471|gb|ELO46169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|435276260|gb|ELO54272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|435278045|gb|ELO55921.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|435285837|gb|ELO63199.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|435286577|gb|ELO63830.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|435293060|gb|ELO69790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|435294461|gb|ELO71094.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|435295604|gb|ELO72053.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|435324984|gb|ELO96877.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|435332743|gb|ELP03646.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|435335282|gb|ELP05555.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|444851732|gb|ELX76818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|444852360|gb|ELX77440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|444856755|gb|ELX81779.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|444859847|gb|ELX84783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|444862587|gb|ELX87435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|444867881|gb|ELX92554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|444874995|gb|ELX99227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|444880208|gb|ELY04288.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|444884408|gb|ELY08241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|444887710|gb|ELY11400.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 388
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|409200956|ref|ZP_11229159.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
flavipulchra JG1]
Length = 378
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 148/305 (48%), Gaps = 67/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 78 ASDGTIKYALLLEGGQEVETVWIPEKD-----RATLCVSSQVGCALECTFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAI-EEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
NL EI+GQV + +I H+ +TN+V MGMGEP+LNL +V+ A + D
Sbjct: 133 NLKVSEIIGQVWRVATDIGLHKGDSTKRPITNIVMMGMGEPLLNLNNVVPAMELMMDDWA 192
Query: 191 IG--QRMITISTVGV---------------------PNT--------IKKLASYKLQSTL 219
G +R +T+ST GV PN I K Y ++ L
Sbjct: 193 FGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNPLRDVLVPINK--KYPIEEFL 250
Query: 220 A-------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
A + VND +HA EL ++L G +NLIPFNP G+
Sbjct: 251 AACRRYIDGSKANKDVTIEYVMLQDVNDSTDHAHELVQVLK--GTPSKINLIPFNPFPGN 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSE 320
+Y R + F+ L++ +T +R+TRG D AACGQL + R+ +
Sbjct: 309 EYGRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVVDRTKRLAKKKQRDD 368
Query: 321 SDIAV 325
+ I V
Sbjct: 369 NAITV 373
>gi|417384855|ref|ZP_12150096.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353607512|gb|EHC61371.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
Length = 353
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 57 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 110
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 111 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 170
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 171 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 230
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 231 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 288
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 289 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 327
>gi|392309331|ref|ZP_10271865.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
citrea NCIMB 1889]
Length = 378
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 148/304 (48%), Gaps = 63/304 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT+K + LE + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 78 ASDGTIKYALVLEGGQEVETVWIPDKD-----RATLCVSSQVGCALECTFCSTAQQGFNR 132
Query: 139 NLSSHEIVGQVLAIEEIF--------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190
NL EI+GQV + + K VTNVV MGMGEP+LN+ +V+ A + D
Sbjct: 133 NLKVSEIIGQVWRVAKDIGLHDGDSTKRPVTNVVMMGMGEPLLNVNNVVPAMELMMDDWA 192
Query: 191 IG--QRMITISTVGV----------------------PNTIKKL-----ASYKLQSTLA- 220
G +R +T+ST GV N ++ + Y ++ LA
Sbjct: 193 FGLSKRRVTLSTSGVVPALDILKERIDVALAISLHAPTNDLRDVLVPINKKYPIEEFLAA 252
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ G+ND + A EL ++L G +NLIPFNP G++Y
Sbjct: 253 CRRYIDGSKANKDVTIEYVMLQGINDSTDQAHELVKVLK--GTPSKINLIPFNPFPGNEY 310
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + F+ L++ +T +R+TRG D AACGQL + R+ ++
Sbjct: 311 GRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVVDRTKRLAKKQMREDNA 370
Query: 323 IAVA 326
IAV+
Sbjct: 371 IAVS 374
>gi|335045301|ref|ZP_08538324.1| 23S rRNA m2A2503 methyltransferase [Oribacterium sp. oral taxon 108
str. F0425]
gi|333759087|gb|EGL36644.1| 23S rRNA m2A2503 methyltransferase [Oribacterium sp. oral taxon 108
str. F0425]
Length = 350
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 148/303 (48%), Gaps = 58/303 (19%)
Query: 55 QSFRNDLQEA---GWTVGRLPIFRTVTAA-DGTVKLLIKLEDNRLIETVGIPVEDEKGPM 110
++ R DL++A +++ ++R T+ D T K L L D IE V +
Sbjct: 45 ENLRKDLRQALREEFSLALPELYRRYTSKLDETEKFLFTLADGHRIEAVFMAYHHGN--- 101
Query: 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170
TAC+S+QVGC + C+FCA+ G +RN SS E++GQ++AIE + +++NVV MG GE
Sbjct: 102 --TACISTQVGCRMGCAFCASTLSGLARNCSSGEMLGQIVAIEHLTGKKISNVVLMGSGE 159
Query: 171 PMLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTIKKLASYKLQSTLAI------- 221
P+ N VL R L+ + I QR IT+ST G+ I +LA KL TLA+
Sbjct: 160 PLDNYTEVLRFIRLLSGKIGRNISQRNITLSTCGIVPRILELAEEKLGITLALSLHAATD 219
Query: 222 -----------RSA---------------------------GVNDQVEHAVELAELLHEW 243
R A GVND E EL+ LL +
Sbjct: 220 EKRKKIMPIANRYALSDVMEAVRFYFKKTGRRISFEYALVFGVNDGEEDIRELSGLLRKK 279
Query: 244 GRGH--HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
G HVNLIP NPI+ D+ P +K + F LE IT +IR+ G D S ACGQL
Sbjct: 280 GEHFPAHVNLIPVNPIKERDFTAPDRKKINRFKEGLEKQGITCTIRREMGADISGACGQL 339
Query: 302 RNE 304
R +
Sbjct: 340 RRD 342
>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
Length = 384
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 88 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 141
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 142 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 201
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 202 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 261
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 262 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFLGAPY 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 320 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>gi|420455894|ref|ZP_14954720.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-14]
gi|393071532|gb|EJB72316.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-14]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 156/334 (46%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPMR---------LTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEKTNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
FA L S + +IR+++ LD AACGQLR
Sbjct: 316 NARMFADFLNSKGLLCTIRESKALDIEAACGQLR 349
>gi|398893847|ref|ZP_10646356.1| 23S rRNA methyltransferase [Pseudomonas sp. GM55]
gi|398183469|gb|EJM70952.1| 23S rRNA methyltransferase [Pseudomonas sp. GM55]
Length = 382
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 150/305 (49%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G VND+VEHAVE+ ELL +NLIPFNP S Y+
Sbjct: 253 QRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKNI--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVLDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
+SD+A
Sbjct: 371 DSDVA 375
>gi|420426142|ref|ZP_14925200.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori Hp A-5]
gi|393039763|gb|EJB40787.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori Hp A-5]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIVHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVFLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|379715605|ref|YP_005303942.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
pseudotuberculosis 316]
gi|377654311|gb|AFB72660.1| Ribosomal RNA large subunit methyltransferase N [Corynebacterium
pseudotuberculosis 316]
Length = 396
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 144/305 (47%), Gaps = 58/305 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P R +QE + V PI T A T K L +L D L+E+V + + P R
Sbjct: 95 LPAGVREKVQEKLFPVLMNPIRAIETDAGETQKTLWQLHDGTLLESVLM-----RYPNRA 149
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH---RVTNVVFMGMG 169
T C+SSQ GC + C FCATG+GG RNLS+ EIV QV A R++N+VFMGMG
Sbjct: 150 TLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAASATMNAEGGRLSNIVFMGMG 209
Query: 170 EPMLNLKSVLEAHRCLNKDVQ----IGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
EP+ N K V+ A R + V I QR +T+STVG+ I+KLA L TLA+
Sbjct: 210 EPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVSLHT 269
Query: 222 ------------------------------RSA-----------GVNDQVEHAVELAELL 240
RS VNDQ A L + L
Sbjct: 270 PDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVNDQPWRADMLGKKL 329
Query: 241 HE-WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
H+ G HVNLIP NP GS++ K F + + + ++R TRG + +AACG
Sbjct: 330 HKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIAAACG 389
Query: 300 QLRNE 304
QL E
Sbjct: 390 QLAAE 394
>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 356
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 60 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 113
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 114 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 173
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 174 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 233
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 234 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 291
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 292 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 330
>gi|210135589|ref|YP_002302028.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori P12]
gi|254807183|sp|B6JNS0.1|RLMN_HELP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|210133557|gb|ACJ08548.1| radical SAM domain-containing enzyme [Helicobacter pylori P12]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDKETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVKKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDGLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|420424473|ref|ZP_14923540.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-4]
gi|393039308|gb|EJB40336.1| 23S rRNA methyltransferase [Helicobacter pylori Hp A-4]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEREFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|419418215|ref|ZP_13958560.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori NCTC 11637 = CCUG 17874]
gi|384374580|gb|EIE29968.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori NCTC 11637 = CCUG 17874]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPLEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEMRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
W3-18-1]
gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
Length = 399
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 144/303 (47%), Gaps = 64/303 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K I + + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 102 STDGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 156
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 157 NLTVSEIVGQIWRVSHFLGFAKDTGDRPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 216
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 217 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGI 276
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND E A ELA+L+ + VNLIPFNP GS Y
Sbjct: 277 RRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKD--TPCKVNLIPFNPYPGSPY 334
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSSESD 322
R + F+ L + +T +R+TRG D AACGQL + + R+ + E+
Sbjct: 335 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL-AKKRMQENQ 393
Query: 323 IAV 325
I+V
Sbjct: 394 ISV 396
>gi|338211352|ref|YP_004655405.1| ribosomal RNA large subunit methyltransferase N [Runella
slithyformis DSM 19594]
gi|336305171|gb|AEI48273.1| Ribosomal RNA large subunit methyltransferase N [Runella
slithyformis DSM 19594]
Length = 353
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 137/272 (50%), Gaps = 54/272 (19%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGTVK KL D LIE V IP +D R+TACVSSQVGC L C FCATG RNL
Sbjct: 82 DGTVKSAFKLHDGHLIEGVLIPADD-----RMTACVSSQVGCSLTCKFCATGYMDRKRNL 136
Query: 141 SSHEIVGQVLAIE----EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--R 194
+ E+ QV+AI+ E F +TN+V+MGMGEP+LN +VLE+ + +G +
Sbjct: 137 DAAEMYDQVVAIDRQAKENFNVPLTNIVYMGMGEPLLNYANVLESIEKITSPEGLGMSPK 196
Query: 195 MITISTVGVPNTIKKLASYKLQSTLAIRSAGVNDQVEHAV----------ELAELL-HEW 243
IT+ST G+ IKKL +++ LA+ ND + + LAE L + +
Sbjct: 197 RITVSTAGIAKMIKKLGDDEVKFNLALSLHAANDVKRNQIMPINESNSLENLAEALQYFY 256
Query: 244 GRGHH--------------------------------VNLIPFNPIEGSDYQRPYKKAVL 271
G+ + VN+I +NPI +D++ +
Sbjct: 257 GKTKNRITFEYIVFNNFNDTLQDAKELWEFTKKVPAKVNIIEYNPIAEADFKNTGVDKLE 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRN 303
FA LES + ++R++RG D AACGQL N
Sbjct: 317 QFARFLESKGVIVNVRRSRGKDIDAACGQLAN 348
>gi|384898087|ref|YP_005773515.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Lithuania75]
gi|317013192|gb|ADU83800.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori Lithuania75]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRKSVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDKETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|312132647|ref|YP_003999986.1| fe-s-cluster redox enzyme [Bifidobacterium longum subsp. longum
BBMN68]
gi|419849125|ref|ZP_14372188.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 35B]
gi|419852089|ref|ZP_14374986.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 2-2B]
gi|311773598|gb|ADQ03086.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
subsp. longum BBMN68]
gi|386411863|gb|EIJ26573.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 2-2B]
gi|386412749|gb|EIJ27399.1| 23S rRNA m2A2503 methyltransferase [Bifidobacterium longum subsp.
longum 35B]
Length = 389
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMGCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTKQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|283456084|ref|YP_003360648.1| radical SAM family enzyme [Bifidobacterium dentium Bd1]
gi|283102718|gb|ADB09824.1| Radical SAM family enzyme [Bifidobacterium dentium Bd1]
Length = 389
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 144/306 (47%), Gaps = 63/306 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P + R + EA + + R V T+K L +L D LIE+V + + P R T
Sbjct: 83 PANKRAEAAEAFFPTLITEVTRQVADEGTTIKTLWRLFDGSLIESVLM-----RYPTRTT 137
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVF 165
C+SSQVGC + C FCATGK G +RN+S+ EIV QV + + R++N+VF
Sbjct: 138 LCISSQVGCGMGCPFCATGKLGLTRNMSAGEIVEQVRVAAKAMRDGEVAGGPGRLSNIVF 197
Query: 166 MGMGEPMLNLKSVLEAHRCLN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI 221
MGMGEPM N +SVL A R ++ + I R IT+STVGV IKKL + + LA+
Sbjct: 198 MGMGEPMGNYRSVLSAVRQISAMPPEGFVISARNITVSTVGVVPGIKKLTAEGIPVRLAV 257
Query: 222 R---------------------------------------------SAGVNDQVEHAVEL 236
G+NDQ EHA L
Sbjct: 258 SLHAPSDELRDELVPMNKRFDTTQVLDAAHDYYLASKRRVSIEYALMRGINDQAEHARLL 317
Query: 237 AELLHEWGRG-HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
A+ L+ +G HVN IP NPIEGS + + F L +T ++R TRG D
Sbjct: 318 AKRLNHYGDNWAHVNPIPLNPIEGSKWTASKPEDERRFLDILHQAGVTATLRDTRGQDID 377
Query: 296 AACGQL 301
ACGQL
Sbjct: 378 GACGQL 383
>gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
Length = 399
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 135/282 (47%), Gaps = 61/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K + ++ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R
Sbjct: 92 SEDGTRKWVFEVAGGSLVETVLIPADDNKQFGRKTLCISSQVGCALDCSFCSTGKQGFER 151
Query: 139 NLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
+LS EI+GQ+ + + ++RVTNVV MGMGEP+LN + V+ + + D
Sbjct: 152 DLSPSEIIGQLWVANQSYMENVPVTERENRVTNVVMMGMGEPLLNYEPVVASMSLMLDDF 211
Query: 190 QIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA 220
G +R +T+ST G+ + +LA Y L+ +A
Sbjct: 212 GFGLSKRRVTLSTSGIVPKMYELAKDIDVALAISLHAPNDELRNELVPINKKYPLKELIA 271
Query: 221 ---------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
+ VND EHA +L LL + +NLIPFNP
Sbjct: 272 AAKSYVYDENPRHKKHVTIEYVMLKDVNDTDEHARQLVNLLKDL--PCKINLIPFNPFPH 329
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ Y R + AF+ L +IRQTRG D AACGQL
Sbjct: 330 APYGRSSNNRIHAFSNILNQAGFVCTIRQTRGDDIDAACGQL 371
>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
symbiont]
Length = 376
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I++ D +L+ETV IP D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 80 SSDGTIKWAIRVGD-QLVETVYIPEAD-----RATLCVSSQVGCALECKFCSTAQQGFNR 133
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 134 NLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 193
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLAI- 221
G +R +T+ST GV + KL Y +++ LA
Sbjct: 194 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDDIVPINKKYNIEAFLAAV 253
Query: 222 -RSAG------------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R G VND EHA ELA LL E +NLIP+NP G+ Y
Sbjct: 254 KRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHELAALLKE--TPCKINLIPWNPFPGAPY 311
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L + TT +R+TRG D AACGQL
Sbjct: 312 GRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQL 350
>gi|420466170|ref|ZP_14964931.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-6]
gi|393079010|gb|EJB79746.1| 23S rRNA methyltransferase [Helicobacter pylori Hp H-6]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKHKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|386740639|ref|YP_006213819.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
pseudotuberculosis 31]
gi|384477333|gb|AFH91129.1| Ribosomal RNA large subunit methyltransferase N [Corynebacterium
pseudotuberculosis 31]
Length = 396
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 144/305 (47%), Gaps = 58/305 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P R +QE + V PI T A T K L +L D L+E+V + + P R
Sbjct: 95 LPAGVREKVQEKLFPVLMNPIRAIETDAGETQKTLWQLHDGTLLESVLM-----RYPNRA 149
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH---RVTNVVFMGMG 169
T C+SSQ GC + C FCATG+GG RNLS+ EIV QV A R++N+VFMGMG
Sbjct: 150 TLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAASATMNAEGGRLSNIVFMGMG 209
Query: 170 EPMLNLKSVLEAHRCLNKDVQ----IGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
EP+ N K V+ A R + V I QR +T+STVG+ I+KLA L TLA+
Sbjct: 210 EPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVSLHT 269
Query: 222 ------------------------------RSA-----------GVNDQVEHAVELAELL 240
RS VNDQ A L + L
Sbjct: 270 PDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVNDQPWRADMLGKKL 329
Query: 241 HE-WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
H+ G HVNLIP NP GS++ K F + + + ++R TRG + +AACG
Sbjct: 330 HKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIAAACG 389
Query: 300 QLRNE 304
QL E
Sbjct: 390 QLAAE 394
>gi|385807787|ref|YP_005844184.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
pseudotuberculosis 267]
gi|383805180|gb|AFH52259.1| Ribosomal RNA large subunit methyltransferase N [Corynebacterium
pseudotuberculosis 267]
Length = 350
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 144/305 (47%), Gaps = 58/305 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P R +QE + V PI T A T K L +L D L+E+V + + P R
Sbjct: 49 LPAGVREKVQEKLFPVLMNPIRAIETDAGETQKTLWQLHDGTLLESVLM-----RYPNRA 103
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH---RVTNVVFMGMG 169
T C+SSQ GC + C FCATG+GG RNLS+ EIV QV A R++N+VFMGMG
Sbjct: 104 TLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAASATMNAEGGRLSNIVFMGMG 163
Query: 170 EPMLNLKSVLEAHRCLNKDVQ----IGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
EP+ N K V+ A R + V I QR +T+STVG+ I+KLA L TLA+
Sbjct: 164 EPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVSLHT 223
Query: 222 ------------------------------RSA-----------GVNDQVEHAVELAELL 240
RS VNDQ A L + L
Sbjct: 224 PDDELRNTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVNDQPWRADMLGKKL 283
Query: 241 HE-WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
H+ G HVNLIP NP GS++ K F + + + ++R TRG + +AACG
Sbjct: 284 HKALGSLVHVNLIPLNPTPGSEWDASPKDRQHEFVRRVIAQGVPCTVRDTRGQEIAAACG 343
Query: 300 QLRNE 304
QL E
Sbjct: 344 QLAAE 348
>gi|374337519|ref|YP_005094223.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
gi|372283623|emb|CCF01815.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
Length = 368
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 141/282 (50%), Gaps = 58/282 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D LIETV + + L+ CV+SQVGC + CSFCA+G R
Sbjct: 80 ASDGTVKYLFELPDGMLIETVLM-----RQHYGLSVCVTSQVGCDMGCSFCASGLIKKQR 134
Query: 139 NLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191
+L+S EI Q++ +++ F RV++VV MG+GEP N +VL R +N D + I
Sbjct: 135 DLTSGEITSQIMMVQKYFDERGQDERVSHVVVMGIGEPFDNYNNVLRFLRTINDDNGLAI 194
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA------------------ 224
G R IT+ST G+ + I+ A LQ LA+ RS
Sbjct: 195 GARHITVSTSGLAHKIRDFAHESLQVNLAVSLHAPNNELRSQIMRVNRSFPLEKLFAAIE 254
Query: 225 ------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND E+A ELA+L + + ++NLIP+NP+ D Y R
Sbjct: 255 YYVETTNRRVTFEYIMLNEVNDFPENAQELADLTKKIRKLSYINLIPYNPVSEHDQYSRS 314
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
K+ V AF L+ + + +RQ G D AACGQLR+ K
Sbjct: 315 SKERVAAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMK 356
>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 315
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 42 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 95
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 96 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 155
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 156 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 215
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 216 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 273
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 274 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 312
>gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
Length = 355
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 148/285 (51%), Gaps = 58/285 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGTVK L +L D +IETV + E G L+ CV++QVGC + C+FCA+G +R
Sbjct: 74 ASDGTVKYLFELPDKNMIETV--LMRQEYG---LSVCVTTQVGCNIGCTFCASGLLKKNR 128
Query: 139 NLSSHEIVGQVLAIEEIFK-----HRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQI 191
+L++ EIV Q++ ++ F RV++VV MG+GEP N +V++ +N K + I
Sbjct: 129 DLTAGEIVAQIMMVQHYFDERNLGERVSHVVVMGIGEPFDNYDNVMDFLHIINDAKGLAI 188
Query: 192 GQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS----------- 223
G R IT+ST G+ + IK+ A+ LQ LAI RS
Sbjct: 189 GARHITVSTSGLAHKIKEFANNGLQVNLAISLHAPNNEVRTSIMRINRSFPIEKLMEAVD 248
Query: 224 -----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-YQRP 265
VND+ EHA +LA+LL + + +VNLIP+NP+ D Y R
Sbjct: 249 EYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLLKDKKKLAYVNLIPYNPVSEHDQYSRC 308
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPL 310
K VL F L+ + + IR+ G D AACGQLR++ K +
Sbjct: 309 PKADVLRFYDVLKKNGVNCVIRKEHGTDIDAACGQLRSKQMKKTV 353
>gi|326316277|ref|YP_004233949.1| radical SAM family protein [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 373
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 155/335 (46%), Gaps = 64/335 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GAS R + +S R L V LP+ +ADGTVK L
Sbjct: 26 RAVQLFRWIHQRGASDFARMS-DLAKSLREKLSGCAH-VAALPVISEHVSADGTVKWLFD 83
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+ D +E+V IP ED++G T C+SSQ GC + C FC+TG GFSRNL+S EIV Q+
Sbjct: 84 VGDGNAVESVFIP-EDDRG----TLCISSQAGCAVGCRFCSTGHQGFSRNLTSGEIVAQL 138
Query: 150 LAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIST 200
E + R ++NVV MGMGEP+ N +++ A R + D G +R +T+ST
Sbjct: 139 WFAEHALRARLGTQERVISNVVMMGMGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVST 198
Query: 201 VGVPNTIKKLA---------------------------SYKLQSTL---------AIRS- 223
GV + +L+ Y L+ L A R
Sbjct: 199 SGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDF 258
Query: 224 --------AGVNDQVEHAVELAELLHEWGRGH---HVNLIPFNPIEGSDYQRPYKKAVLA 272
GVNDQ EHA +L +L+ G NLIPFNP S R V A
Sbjct: 259 ITFEYCMLDGVNDQPEHARQLIDLVRPRGAEGVRCKFNLIPFNPFPASGLHRSNPGQVAA 318
Query: 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307
FA L I T++R+TRG D AACGQL + +
Sbjct: 319 FAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDVKD 353
>gi|387895486|ref|YP_006325783.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas fluorescens
A506]
gi|423693449|ref|ZP_17667969.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens SS101]
gi|387162859|gb|AFJ58058.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens A506]
gi|387998288|gb|EIK59617.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens SS101]
Length = 382
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 138/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I +LA +
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ +TL + VND++EHAVE+ ELL + +NLIPFNP S Y+
Sbjct: 253 QRYMATLGEKRVLTIEYTMLKDVNDKLEHAVEMIELLKD--TPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 386
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 92 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 145
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 146 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 205
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 206 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 265
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 266 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 323
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 324 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 362
>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
gi|81680833|sp|Q603C0.1|RLMN_METCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
str. Bath]
Length = 366
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 138/272 (50%), Gaps = 56/272 (20%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +++++ +ETV IP E R T CVSSQVGC L CSFC+T + GF+R
Sbjct: 84 SADGTRKWVLQVDAVNRVETVLIPDEG-----RNTLCVSSQVGCSLECSFCSTARQGFNR 138
Query: 139 NLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QR 194
NL++ EI+GQ+ + + R++NVV MGMGEP+LN +V+ A R + D G +R
Sbjct: 139 NLTTAEIIGQLWVAQHRLDEEQRISNVVLMGMGEPLLNFGNVVAATRLMMDDFAYGLSKR 198
Query: 195 MITISTVGVPNTIKKLAS---------------------------YKLQSTLA------- 220
+T+ST G+ + +LA Y ++ LA
Sbjct: 199 RVTLSTSGIVPALDRLAEVSDISLAVSLHAPDDTLRNELVPINRKYPIRELLAACKRYVG 258
Query: 221 -----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269
+ GVND+ EHA L LL VNLIPFNP S Y+ + +
Sbjct: 259 TENRRKVTFEYVMLDGVNDRPEHARALVRLLSHV--PSKVNLIPFNPFPNSAYRCSHPET 316
Query: 270 VLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ FA L+ + T+ R+TRG D AACGQL
Sbjct: 317 IARFAQTLQDAGLITTTRKTRGRDIDAACGQL 348
>gi|423097174|ref|ZP_17084970.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens Q2-87]
gi|397884551|gb|EJL01034.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens Q2-87]
Length = 382
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 138/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +LA Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G VND+VEHAVE+ ELL +NLIPFNP S Y+
Sbjct: 253 QRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKNI--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|417609142|ref|ZP_12259645.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
gi|345358351|gb|EGW90539.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
Length = 336
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 138/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 40 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 93
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 94 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGF 153
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y +++ LA
Sbjct: 154 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAV 213
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ VND EHA +LAELL + +NLIP+NP G+ Y
Sbjct: 214 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIPWNPFPGAPY 271
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 272 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 310
>gi|334705279|ref|ZP_08521145.1| ribosomal RNA large subunit methyltransferase N [Aeromonas caviae
Ae398]
Length = 367
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 142/283 (50%), Gaps = 59/283 (20%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
I R +ADGT+K +++ D +ETV IP D R T CVSSQVGC L C+FC+T
Sbjct: 70 ISREQRSADGTIKWALQVGDQE-VETVYIPEAD-----RATLCVSSQVGCALACTFCSTA 123
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIF--KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD-- 188
+ GF+RNL EI+GQV ++ K +TNVV MGMGEP+LNL +V+ A + + D
Sbjct: 124 QQGFNRNLKVSEIIGQVWRAAKVVGGKRPITNVVMMGMGEPLLNLANVVPAMKLMMDDFG 183
Query: 189 VQIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA- 220
I +R +T+ST GV + L Y +++ LA
Sbjct: 184 FSISKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPNDALRSEIMPINDKYNIEAFLAG 243
Query: 221 -------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261
+ +ND ++HA ELA++L E +NLIPFNP G+
Sbjct: 244 VRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKE--TPCKINLIPFNPFPGNP 301
Query: 262 YQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ +P + F+ L + +T +R+TRG D AACGQL E
Sbjct: 302 FGKPSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLVGE 344
>gi|417392623|ref|ZP_12155396.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|353611246|gb|EHC63965.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
Length = 363
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT+K I + D R +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 67 SSDGTIKWAIAVGDQR-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 120
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 121 NLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGF 180
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTL-AI 221
G +R +T+ST GV + KL Y +++ L A+
Sbjct: 181 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAV 240
Query: 222 RS-------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
R VND EHA +LAELL E +NLIP+NP G+ Y
Sbjct: 241 RRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE--TPCKINLIPWNPFPGAPY 298
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + F+ L S+ TT +R+TRG D AACGQL
Sbjct: 299 GRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 337
>gi|337291022|ref|YP_004630043.1| hypothetical protein CULC22_01414 [Corynebacterium ulcerans
BR-AD22]
gi|384515934|ref|YP_005711026.1| hypothetical protein CULC809_01400 [Corynebacterium ulcerans 809]
gi|397654283|ref|YP_006494966.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
ulcerans 0102]
gi|334697135|gb|AEG81932.1| hypothetical protein CULC809_01400 [Corynebacterium ulcerans 809]
gi|334699328|gb|AEG84124.1| hypothetical protein CULC22_01414 [Corynebacterium ulcerans
BR-AD22]
gi|393403239|dbj|BAM27731.1| ribosomal RNA large subunit methyltransferase N [Corynebacterium
ulcerans 0102]
Length = 396
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 144/305 (47%), Gaps = 58/305 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+P + R +QE + P+ T A T K L KL D L+E+V + + P R
Sbjct: 95 LPAAARVKVQEKLFPTLMTPVRAIETDAGETQKTLWKLHDGTLLESVLM-----RYPNRA 149
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH---RVTNVVFMGMG 169
T C+SSQ GC + C FCATG+GG RNLS+ EIV QV A R++N+VFMGMG
Sbjct: 150 TLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAASATMTAEGGRLSNIVFMGMG 209
Query: 170 EPMLNLKSVLEAHRCLNKDVQ----IGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
EP+ N K V+ A R + V I QR +T+STVG+ I+KLA L TLA+
Sbjct: 210 EPLANYKRVVSAVRQITSPVPEGFGISQRNVTVSTVGLAPAIRKLAEEDLSVTLAVSLHT 269
Query: 222 ------------------------------RSA-----------GVNDQVEHAVELAELL 240
RS VNDQ A L + L
Sbjct: 270 PDDELRDTLVPTNNRWEVAEVLDAARYYADRSGRRVSIEYALIRDVNDQPWRADMLGKKL 329
Query: 241 HE-WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
H+ G HVNLIP NP GS++ K F + + + ++R TRG + +AACG
Sbjct: 330 HKALGSLVHVNLIPLNPTPGSEWDASPKDRQDEFVRRVIAQGVPCTVRDTRGQEIAAACG 389
Query: 300 QLRNE 304
QL E
Sbjct: 390 QLAAE 394
>gi|429332403|ref|ZP_19213128.1| radical SAM protein [Pseudomonas putida CSV86]
gi|428762902|gb|EKX85092.1| radical SAM protein [Pseudomonas putida CSV86]
Length = 380
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 141/278 (50%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SADGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY---KLQSTL-----AIRS------------------ 223
G +R +T+ST GV I +LA + L +L A+R+
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNELVPINKKYPLKVVLDSC 252
Query: 224 --------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
VNDQ+EHA E+AELL + +NLIPFNP S Y+
Sbjct: 253 MRYMSELGEKRVLTIEYTLLKDVNDQLEHAKEMAELLKDV--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F + + ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDYMHNAGYNVTVRTTRGEDIDAACGQL 348
>gi|420491522|ref|ZP_14990101.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-13]
gi|420525443|ref|ZP_15023848.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-13b]
gi|393104949|gb|EJC05501.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-13]
gi|393130249|gb|EJC30679.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-13b]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 156/334 (46%), Gaps = 67/334 (20%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEREKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
FA L + + +IR+++ LD AACGQLR
Sbjct: 316 NARMFADFLNAKGLLCTIRESKALDIEAACGQLR 349
>gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948956|ref|YP_005206444.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens F113]
gi|423695452|ref|ZP_17669942.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens
Q8r1-96]
gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758970|gb|AEV61049.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens F113]
gi|388009256|gb|EIK70507.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens
Q8r1-96]
Length = 382
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 138/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVSAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +LA Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G VND+VEHAVE+ ELL +NLIPFNP S Y+
Sbjct: 253 QRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKNI--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25]
gi|440741229|ref|ZP_20920678.1| hypothetical protein A986_22863 [Pseudomonas fluorescens BRIP34879]
gi|447918225|ref|YP_007398793.1| hypothetical protein H045_16170 [Pseudomonas poae RE*1-1-14]
gi|259491993|sp|C3K1L7.1|RLMN_PSEFS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
gi|440373210|gb|ELQ09975.1| hypothetical protein A986_22863 [Pseudomonas fluorescens BRIP34879]
gi|445202088|gb|AGE27297.1| hypothetical protein H045_16170 [Pseudomonas poae RE*1-1-14]
Length = 382
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 137/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I +LA +
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ +TL + +ND+VEHAVE+ ELL +NLIPFNP S Y+
Sbjct: 253 QRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLK--NTPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|23335166|ref|ZP_00120404.1| COG0820: Predicted Fe-S-cluster redox enzyme [Bifidobacterium
longum DJO10A]
gi|189439272|ref|YP_001954353.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum DJO10A]
gi|322689304|ref|YP_004209038.1| hypothetical protein BLIF_1118 [Bifidobacterium longum subsp.
infantis 157F]
gi|189427707|gb|ACD97855.1| Hypothetical Fe-S-cluster redox enzyme [Bifidobacterium longum
DJO10A]
gi|320460640|dbj|BAJ71260.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 389
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMGCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGEGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTAQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|420500179|ref|ZP_14998728.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-26]
gi|393148705|gb|EJC49023.1| 23S rRNA methyltransferase [Helicobacter pylori Hp P-26]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIVHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
Length = 332
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 155/317 (48%), Gaps = 63/317 (19%)
Query: 37 WHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLI 96
W +AG + + ++ R+ LQ+ + + R + + + DGTVKLL+ L D I
Sbjct: 23 WQKKAGDFQEMTN---ISKALRSSLQQE-FVLQRPAVVQKKESIDGTVKLLLGLNDGFFI 78
Query: 97 ETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLA----I 152
ETV IP +D T C+S+QVGCP+ C FC+TG GF RNL+ EI QVL +
Sbjct: 79 ETVIIPEKD-----YYTQCISTQVGCPMGCVFCSTGCMGFKRNLTPGEIASQVLVACRHL 133
Query: 153 EE--IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIK 208
E+ + R+TNVV MGMGEP+LN +V +A + + +G +R +T+STVGV + ++
Sbjct: 134 EDTGLDSTRLTNVVLMGMGEPLLNWDAVKKAMYMMTDSLGLGISRRRLTLSTVGVRDRLQ 193
Query: 209 KLASYKL-----------------------------------QSTLAIRS---------A 224
+ S +L Q LA R
Sbjct: 194 EFGSSRLGMLAVSLHAPDQDLRRRLMPGAATWDIKDLVRALEQYPLAPRERITIEYVLLK 253
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
+ND A L LL VNL+ +NP E YQ P +K +L F L S +T
Sbjct: 254 DINDSPAQARALVRLLSR--VKCKVNLLAYNPGEQEGYQPPQEKTILTFEEVLRSKGLTV 311
Query: 285 SIRQTRGLDASAACGQL 301
++R+++G D SAACGQL
Sbjct: 312 TLRKSKGQDISAACGQL 328
>gi|213691945|ref|YP_002322531.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
longum subsp. infantis ATCC 15697 = JCM 1222]
gi|384199100|ref|YP_005584843.1| hypothetical protein [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213523406|gb|ACJ52153.1| radical SAM enzyme, Cfr family [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320458052|dbj|BAJ68673.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 389
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 137/287 (47%), Gaps = 63/287 (21%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+ R V T+K L KL D LIE+V + + P R T C+SSQVGC + C FCATG
Sbjct: 103 VTRQVADEGTTIKTLWKLFDGSLIESVLM-----RYPTRTTLCISSQVGCGMGCPFCATG 157
Query: 133 KGGFSRNLSSHEIVGQVLAIEEIFKH--------RVTNVVFMGMGEPMLNLKSVLEAHRC 184
K G +RN+S+ EI+ QV ++ + R++N+VFMGMGEPM N SVL A R
Sbjct: 158 KLGLTRNMSTGEIIEQVRVAAKMMRDGEVAGGAGRLSNIVFMGMGEPMGNYNSVLSAVRQ 217
Query: 185 LN----KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222
++ + I R IT+STVGV IKKL + + LA+
Sbjct: 218 ISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSLHAPSDELRDELVPMNKR 277
Query: 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRG-HHVNLIPF 254
G+NDQ EHA LA+ L+ +G HVN IP
Sbjct: 278 FNTTQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAKRLNHYGDNWAHVNPIPL 337
Query: 255 NPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
NPIEGS + + F L IT ++R TRG D ACGQL
Sbjct: 338 NPIEGSKWTASKPEDEQRFLEILHRAGITATLRDTRGQDIDGACGQL 384
>gi|225021120|ref|ZP_03710312.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
ATCC 33806]
gi|224946120|gb|EEG27329.1| hypothetical protein CORMATOL_01132 [Corynebacterium matruchotii
ATCC 33806]
Length = 389
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 150/306 (49%), Gaps = 60/306 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+P + R+ + EA + P+ R VTA DG T K L +L D L+E+V + + P R
Sbjct: 85 LPAAVRDAVAEALFPTLMTPV-RQVTADDGETHKTLWRLHDGTLLESVLM-----RYPNR 138
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGM 168
T C+SSQ GC + C FCATG+ G RNLS+ EI+ QV + +R++N+VFMGM
Sbjct: 139 ATLCISSQAGCGMACPFCATGQAGLDRNLSTGEIIDQVRSAARTMAAEGNRLSNIVFMGM 198
Query: 169 GEPMLNLKSVLEAHRCLNKDVQ----IGQRMITISTVGVPNTIKKLASYKLQSTLAI--- 221
GEP+ N K V+ A R + V I QR +T+STVG+ I+KLA L TLA+
Sbjct: 199 GEPLANYKRVVSAVRQITAPVPQGFGISQRNVTVSTVGMAPMIRKLADENLSVTLAVSLH 258
Query: 222 -------------------------------RSA-----------GVNDQVEHAVELAEL 239
RS +NDQ A L +
Sbjct: 259 TPDDELRDTLVPVNNRWSVAEVLDAAAYYADRSGRRVSIEYALIRDINDQGWRADLLGKK 318
Query: 240 LHE-WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAAC 298
LH+ G HVNLIP NP GS + ++ F + + +T ++R T+G + +AAC
Sbjct: 319 LHKALGSKAHVNLIPLNPTPGSKWDASPREQQAEFVRRVIAQGVTCTVRDTKGQEIAAAC 378
Query: 299 GQLRNE 304
GQL E
Sbjct: 379 GQLAAE 384
>gi|388467704|ref|ZP_10141914.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas synxantha BG33R]
gi|388011284|gb|EIK72471.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas synxantha BG33R]
Length = 382
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 137/278 (49%), Gaps = 62/278 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
++DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 SSDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLASY------------------------------------ 213
G +R +T+ST GV I +LA +
Sbjct: 193 GISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 214 -KLQSTLAIRSA---------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ +TL + +ND+VEHAVE+ ELL +NLIPFNP S Y+
Sbjct: 253 QRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLK--NTPCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
RP A+ F L ++R TRG D AACGQL
Sbjct: 311 RPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|336310628|ref|ZP_08565600.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
gi|386314500|ref|YP_006010665.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|205829898|sp|A1RHQ0.2|RLMN_SHESW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|335866358|gb|EGM71349.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
Length = 373
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 138/290 (47%), Gaps = 63/290 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT+K I + + + +ETV IP +D R T CVSSQVGC L C+FC+T + GF+R
Sbjct: 76 STDGTIKFAIHVGEGQEVETVYIPEDD-----RATLCVSSQVGCALECTFCSTAQQGFNR 130
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--V 189
NL+ EIVGQ+ + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 131 NLTVSEIVGQIWRVSHFLGFAKDTGDRPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGF 190
Query: 190 QIGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
+ +R +T+ST GV + KL Y LQ LA
Sbjct: 191 SLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGI 250
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND E A ELA+L+ + VNLIPFNP GS Y
Sbjct: 251 RRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKDT--PCKVNLIPFNPYPGSPY 308
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRI 312
R + F+ L + +T +R+TRG D AACGQL + + R+
Sbjct: 309 GRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRL 358
>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
Length = 378
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 136/291 (46%), Gaps = 66/291 (22%)
Query: 79 AADGTVKLLIKLED--NRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGF 136
+ DGT K +I+ E N +ETV IP D R T CVSSQVGC L CSFC+TGK GF
Sbjct: 84 SNDGTRKWIIRTEGGGNNCVETVLIPDGD-----RATLCVSSQVGCSLDCSFCSTGKQGF 138
Query: 137 SRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
+RNL+ E++GQV + F RVTNVV MGMGEP++N + V++A + D
Sbjct: 139 NRNLTPSEVIGQVWVAIKSFGPFDPNGPRRVTNVVMMGMGEPLMNFEPVVDAMTLMMDDN 198
Query: 190 QIG--QRMITISTVGVPNTIKKLASYKLQSTLAIR------------------------- 222
G +R +T+ST GV I +LA + +LAI
Sbjct: 199 AYGMSKRRVTLSTSGVVPKIYELAE-RTDVSLAISLHAPTNELRDVLVPINKKYPINELL 257
Query: 223 ----------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
AGVND E A L++LL +NLIPFNP S
Sbjct: 258 GACQHYLTSLPDKRHITIEYTMMAGVNDSEEQARALSKLLKTL--ECKINLIPFNPFPNS 315
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
Y +P V F L T ++R TRG D AACGQL +F R
Sbjct: 316 GYDKPSNNQVRRFQKVLADDGYTVTVRTTRGDDIDAACGQLVGDFHDKTRR 366
>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
Length = 388
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 139/282 (49%), Gaps = 63/282 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT K +++ L+E V IP E G R T CVSSQVGC L C FC+TGK GF R
Sbjct: 87 SADGTRKWAVRVAGGALVEAVLIP---EAG--RATLCVSSQVGCSLDCKFCSTGKQGFQR 141
Query: 139 NLSSHEIVGQV-LAIE-----EIFKHR-VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
+L++ EI+GQV LAI + K R VTNVV MGMGEP+LN +V+ A + D+
Sbjct: 142 DLTAAEIIGQVWLAINSYSGWQSGKGRIVTNVVMMGMGEPLLNFDNVVSAMSLMTDDLAY 201
Query: 192 G--QRMITISTVGVPNTIKKLASYK-------------------------------LQST 218
G +R +T+ST GV + +LA + LQS
Sbjct: 202 GLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHAPNDEIRNKIVPINRRYPIQQLLQSA 261
Query: 219 LAIRS----------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ AGVNDQ EHA EL+ LL ++ +NLIPFN S +
Sbjct: 262 KSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELSTLLKDF--PCKINLIPFNHFPNSGF 319
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
RP AV F L ++R TRG D AACGQL E
Sbjct: 320 DRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACGQLVGE 361
>gi|440286596|ref|YP_007339361.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440046118|gb|AGB77176.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 388
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 147/306 (48%), Gaps = 67/306 (21%)
Query: 53 VPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR 111
+ + RN L+E R P + ++DGT+K I + D R +ETV IP +D R
Sbjct: 67 INKVLRNKLKEVAEI--RAPEVVEEQRSSDGTIKWAIAVGDQR-VETVYIPEDD-----R 118
Query: 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVV 164
T CVSSQVGC L C FC+T + GF+RNL EI+GQV +I + +TNVV
Sbjct: 119 ATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVV 178
Query: 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLAS---------- 212
MGMGEP+LNL +V+ A + D G +R +T+ST GV + KL
Sbjct: 179 MMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISL 238
Query: 213 -----------------YKLQSTLA--------------------IRSAGVNDQVEHAVE 235
Y +++ LA + VND EHA +
Sbjct: 239 HAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQ 298
Query: 236 LAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295
LAELL + +NLIP+NP G+ Y R + F+ L + TT +R+TRG D
Sbjct: 299 LAELLKD--TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDID 356
Query: 296 AACGQL 301
AACGQL
Sbjct: 357 AACGQL 362
>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81419944|sp|Q7N709.1|RLMN_PHOLL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 392
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 135/279 (48%), Gaps = 64/279 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ADGT+K I + D + +ETV IP +D R T CVSSQVGC L C FC+T + GF+R
Sbjct: 96 SADGTIKWAITVGDQQ-VETVYIPEDD-----RATLCVSSQVGCALECKFCSTAQQGFNR 149
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL EI+GQV +I + +TNVV MGMGEP+LNL +V+ A + D
Sbjct: 150 NLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAMEIMMDDFGF 209
Query: 192 G--QRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA-- 220
G +R +T+ST GV + KL Y ++ LA
Sbjct: 210 GLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDVRDDIVPINRKYNIEQFLAGV 269
Query: 221 ------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
+ +ND VE A +LAE L E +NLIP+NP G+ Y
Sbjct: 270 RRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQLAECLKE--TPSKINLIPWNPFPGAPY 327
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
R + FA L + TT +R+TRG D AACGQL
Sbjct: 328 GRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACGQL 366
>gi|357634644|ref|ZP_09132522.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
gi|357583198|gb|EHJ48531.1| radical SAM enzyme, Cfr family [Desulfovibrio sp. FW1012B]
Length = 350
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 153/328 (46%), Gaps = 60/328 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R RQ W + G ++ R L E T+ + R +ADGTVK L
Sbjct: 23 PYRARQVWQWLWQKGCRDIAAMT-DTSKALRARLAEVA-TIAWPQVARVSESADGTVKFL 80
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ L D +E V IP +D TAC+S+QVGC + C+FCATG GF RN++ E++G
Sbjct: 81 LTLGDGESVECVLIPEKDH-----YTACLSTQVGCAMGCAFCATGMMGFRRNMTPGEMLG 135
Query: 148 QVLAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITIST 200
QVL + + + N+VFMGMGEP+LN ++++ L+ + I R IT+ST
Sbjct: 136 QVLVARQYLLEKGVALALRNLVFMGMGEPLLNYDNLVKTLEALHHPQGFDISGRRITVST 195
Query: 201 VGVPNTIKKLASYKLQS--------TLAIRSA---------------------------- 224
GV + L L S T A+R
Sbjct: 196 AGVARHLLDLGRTGLCSLAVSLHAPTQALREKIMPGAAKLPLGELIEILRQYPMKPRERL 255
Query: 225 --------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
GVND +E A EL LL VNLI FN G YQ P + V AF A
Sbjct: 256 TFEYLMLDGVNDSLEDARELVRLLSRV--KAKVNLIVFNATPGLPYQPPPAERVFAFQEA 313
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNE 304
L++ +T ++R+++G D +AACGQLR E
Sbjct: 314 LKAKGLTATVRKSKGADIAAACGQLRAE 341
>gi|420410801|ref|ZP_14909937.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4200]
gi|393026014|gb|EJB27114.1| 23S rRNA m2A2503 methyltransferase [Helicobacter pylori NQ4200]
Length = 357
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 158/336 (47%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEITHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEK---------GPMRLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + C+FC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAILEGEKYTVCVSCQIGCQVGCAFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEDNNLPIEKAFNIVFMGMGEPLNNLDEVCKAIEIFNTGMQISS 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L S + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|255535320|ref|YP_003095691.1| radical SAM protein [Flavobacteriaceae bacterium 3519-10]
gi|255341516|gb|ACU07629.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
3519-10]
Length = 358
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 144/301 (47%), Gaps = 57/301 (18%)
Query: 56 SFRNDLQEA---GWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ DL+E +T+ + + + ++DGT+K +KL D L+E+V IP E R
Sbjct: 60 NLSKDLREKIAQEYTINPISVDQLQKSSDGTIKNGVKLHDGLLVESVLIPTE-----TRT 114
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGM 168
TACVSSQVGC L C FCAT + RNL EIV QV I+ F ++N+VFMGM
Sbjct: 115 TACVSSQVGCSLNCEFCATARLKRMRNLEVAEIVDQVALIDRQSKMYFDRPLSNIVFMGM 174
Query: 169 GEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGVPNTIKKLASYKLQSTLAIRSAGV 226
GEPM+N K+V+EA R + +G R IT+ST G+P IK LA L+ LA+
Sbjct: 175 GEPMMNYKNVVEAIRKITAPDGLGMAPRRITVSTSGIPKMIKMLADENLRVNLALSLHSA 234
Query: 227 NDQVEHAV----------ELAELLHEWGRGH----------------------------- 247
++ + + ++ + L W
Sbjct: 235 IEKTRNEIMPFSDRFPLTDIMDSLKHWYEKTGNIVTFEYCVWKGINDEDEDIKALIRYCK 294
Query: 248 ----HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRN 303
VNLI +NPI Y R K A + LE+ IT IR++RG D AACGQL N
Sbjct: 295 QIPCKVNLIQYNPIGDGKYDRCNKAAEENYVRQLENAGITVLIRRSRGGDIDAACGQLAN 354
Query: 304 E 304
+
Sbjct: 355 K 355
>gi|386749073|ref|YP_006222280.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
cetorum MIT 00-7128]
gi|384555316|gb|AFI03650.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
cetorum MIT 00-7128]
Length = 357
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 142/280 (50%), Gaps = 54/280 (19%)
Query: 73 IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATG 132
+F+++ +L+K++D ++ E G +E EK T CVS QVGC + C+FC T
Sbjct: 78 LFKSLIDGHTFEAVLLKMKDKKIDEESGAILEGEK----YTVCVSCQVGCQVGCTFCFTQ 133
Query: 133 KGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189
KGGF+RNL + EI+ Q L I+E + + N+VFMGMGEP+ NL V +A +
Sbjct: 134 KGGFARNLKASEIIQQALLIKEDNNLPIEKALNIVFMGMGEPLNNLDEVCKAIEIFKVGL 193
Query: 190 QIGQRMITISTVGVPNTIKKLASYKLQSTLAI---------RSA---------------- 224
QI + ITIST GV + I LAS L LAI RS+
Sbjct: 194 QISPKRITISTSGVADKIPVLASKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNE 253
Query: 225 --------------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ND ++ A +L +LL+ G VNLI FNP EGS +QR
Sbjct: 254 VRLWPLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFQR 311
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
P ++ FA L S + +IR+++ LD AACGQLR +
Sbjct: 312 PSIESARIFADFLNSKGLLCTIRESKALDIEAACGQLREK 351
>gi|430806169|ref|ZP_19433284.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
gi|429501549|gb|EKZ99880.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
Length = 384
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 139/284 (48%), Gaps = 64/284 (22%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T++DGT K L+ + D +ETV IP ED +G T CVSSQ GC + C FC+TGK GFS
Sbjct: 74 TSSDGTRKWLLDVGDGNAVETVYIP-EDTRG----TLCVSSQAGCAVNCRFCSTGKQGFS 128
Query: 138 RNLSSHEIVGQVLAIEEIFKHR----------VTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
RNLS+ EI+GQ+ E + + ++NVV MGMGEP+LN +V+ A R +
Sbjct: 129 RNLSTGEIIGQLWMAEFAMRAQLGRGPKDERVISNVVMMGMGEPLLNYDAVVPAMRLMLD 188
Query: 188 DVQIG--QRMITISTVGVPNTIKKLA---------------------------SYKLQST 218
D G +R +T+ST GV + +L+ Y L
Sbjct: 189 DNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNRKYPLAEL 248
Query: 219 LA------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
+A GVND VEHA EL +L+ + NLIPFNP S
Sbjct: 249 MAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVADV--PCKFNLIPFNPFPES 306
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+R + + FA L I T+IR+TRG D AACGQL E
Sbjct: 307 GLKRSNNEQIRRFAQILMDAGIVTTIRKTRGDDIDAACGQLAGE 350
>gi|333375090|ref|ZP_08466914.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
Length = 364
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 160/337 (47%), Gaps = 62/337 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W + G ++ + + +S R L++ VG + + + DGT K L
Sbjct: 24 PFRAKQVMRW-IHQGGAENFEQMTDLAKSLRAKLEQQA-EVGIPALMTSQESKDGTRKWL 81
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ + +ETV IP E E+G T C+SSQVGC L C+FC+TG+ GF+RNLS+ EI+G
Sbjct: 82 LDVGTGNGVETVFIP-ETERG----TLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIG 136
Query: 148 QV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIS 199
Q+ L + + ++NVV MGMGEP+ N +V+ A + D G +R +T+S
Sbjct: 137 QLWWANKALGVTPKNERVISNVVMMGMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVS 196
Query: 200 TVGVPNTIKKLAS---------------------------YKLQSTLA------------ 220
T G+ + +L Y L+ +A
Sbjct: 197 TSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRD 256
Query: 221 ------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
+ GVND+ EHA EL EL+ + NLIPFNP S Y+R K + F
Sbjct: 257 FITFEYVMLDGVNDKPEHARELVELVKD--TPCKFNLIPFNPFPNSGYERSSNKNINIFK 314
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
L + T++R+TRG D AACGQL + + R
Sbjct: 315 EILMEADLVTTVRKTRGDDIDAACGQLAGQVKDKTKR 351
>gi|295091952|emb|CBK78059.1| 23S rRNA m(2)A-2503 methyltransferase [Clostridium cf.
saccharolyticum K10]
Length = 376
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 149/326 (45%), Gaps = 57/326 (17%)
Query: 28 PSRGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86
P R +Q W HV+ AS + + R L + P+ ++A DGT K
Sbjct: 54 PFRAKQLYQWMHVKLAASFDE--MTNLSKGLRETLGRQCFYASLTPVDVRISAVDGTRKY 111
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L +L D +IE+V + + + C+SSQVGC + C FCA+ G RNL E++
Sbjct: 112 LFELSDGNVIESVLMRYKHGN-----SVCISSQVGCRMGCRFCASTLDGLERNLKPSEML 166
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVP 204
Q+ I+ RV+NVV MG GEPM N +++ L + + I QR +T+ST G+
Sbjct: 167 EQIYRIQRDTGERVSNVVVMGSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIV 226
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
I++ A LQ TLA+
Sbjct: 227 PRIRQFAEEGLQVTLALSLHAPNDEVRKTLMPVAKSYALRDVLDACHYYFEKTGRRLTFE 286
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND +E A LAEL+ + + HVNLIP NPI+ DY++ +KA+ F LE
Sbjct: 287 YSLVKGVNDNLEEARALAELIKD--QHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLER 344
Query: 280 HKITTSIRQTRGLDASAACGQLRNEF 305
I ++R+ G D ACGQLR +
Sbjct: 345 RGINVTVRREMGRDIDGACGQLRKSY 370
>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
Length = 378
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 136/276 (49%), Gaps = 59/276 (21%)
Query: 78 TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFS 137
T+ADG K L+ L+ + IETV IP P R T CVSSQ+GCPL C+FC+TG+ GF+
Sbjct: 87 TSADGVRKWLLTLDGDNAIETVFIP-----EPGRGTLCVSSQLGCPLACTFCSTGQQGFN 141
Query: 138 RNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQ 190
RNL++ EIVGQ+L + + RVTNVVFMGMGEP+ N SVL+A + +
Sbjct: 142 RNLTAAEIVGQLLFVTQALAADGVAGRVTNVVFMGMGEPLANFASVLKASNLMVDEHAYN 201
Query: 191 IGQRMITISTVGVPNTIKKLAS---------------------------YKLQSTLA--- 220
+ +R +T+ST G+ + +LA Y + LA
Sbjct: 202 LSRRRVTLSTSGIVPALYRLAEVSRISLAVSLHAPDDALRDELVPINRKYPIAELLAACR 261
Query: 221 ---------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
+ VND HA LA LL G +NLIPFN G+ Y+
Sbjct: 262 NYVECTPHHRITWEYVMLDAVNDTDGHAQALARLLK--GVPSKINLIPFNAFPGAPYRSS 319
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
+ V F L+ T++R+TRG D ACGQL
Sbjct: 320 PPQRVARFTEILQRAGYITTVRKTRGDDIDGACGQL 355
>gi|331269682|ref|YP_004396174.1| radical SAM family protein [Clostridium botulinum BKT015925]
gi|329126232|gb|AEB76177.1| radical SAM enzyme, Cfr family [Clostridium botulinum BKT015925]
Length = 343
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 137/275 (49%), Gaps = 54/275 (19%)
Query: 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNL 140
DGT K L + +D +IE+V + + + CVS+Q+GC + C FCA+ G RNL
Sbjct: 75 DGTEKFLFEYKDGNIIESVVMRYKHGN-----SICVSTQIGCRMGCKFCASTVDGVVRNL 129
Query: 141 SSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITI 198
+S EI Q+L ++ R++NVV MG GEP+ N +VL+ + +N D ++IGQR IT+
Sbjct: 130 TSGEIAAQILKAQQEIGERISNVVLMGSGEPLDNYDNVLKFIKLINDDNALKIGQRHITL 189
Query: 199 STVGVPNTIKKLASYKLQSTLAIR------------------------------------ 222
ST G+ IK+LA KLQ TLAI
Sbjct: 190 STCGIVPKIKELADEKLQITLAISLHAPNDDIRKSMMPVANKYNINELLDACKYYSKITN 249
Query: 223 ---------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAF 273
G+ND ++A EL L G H+NLIP N I+ +DY+R K + F
Sbjct: 250 RRITFEYALVNGINDSAKNAEELFNQLK--GILCHINLIPVNEIKENDYKRSGAKDIEEF 307
Query: 274 AGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
L + I T+IR+ G D + ACGQLR + K+
Sbjct: 308 KNILNKYGIETTIRREMGSDINGACGQLRRNYIKN 342
>gi|381400771|ref|ZP_09925691.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
gi|380834257|gb|EIC14105.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
Length = 364
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 160/337 (47%), Gaps = 62/337 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P R +Q W + G ++ + + +S R L++ VG + + + DGT K L
Sbjct: 24 PFRAKQVMRW-IHQGGAENFEQMTDLAKSLRAKLEQQA-EVGIPALMTSQESKDGTRKWL 81
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ + +ETV IP E E+G T C+SSQVGC L C+FC+TG+ GF+RNLS+ EI+G
Sbjct: 82 LDVGTGNGVETVFIP-ETERG----TLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIG 136
Query: 148 QV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITIS 199
Q+ L + + ++NVV MGMGEP+ N +V+ A + D G +R +T+S
Sbjct: 137 QLWWANKALGVTPKNERVISNVVMMGMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVS 196
Query: 200 TVGVPNTIKKLAS---------------------------YKLQSTLA------------ 220
T G+ + +L Y L+ +A
Sbjct: 197 TSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRD 256
Query: 221 ------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274
+ GVND+ EHA EL EL+ + NLIPFNP S Y+R K + F
Sbjct: 257 FITFEYVMLDGVNDKPEHARELVELVKD--TPCKFNLIPFNPFPNSGYERSSNKNINIFK 314
Query: 275 GALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLR 311
L + T++R+TRG D AACGQL + + R
Sbjct: 315 EILMEANLVTTVRKTRGDDIDAACGQLAGQVKDKTKR 351
>gi|283797835|ref|ZP_06346988.1| radical SAM enzyme, Cfr family [Clostridium sp. M62/1]
gi|291074523|gb|EFE11887.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. M62/1]
Length = 376
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 149/326 (45%), Gaps = 57/326 (17%)
Query: 28 PSRGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86
P R +Q W HV+ AS + + R L + P+ ++A DGT K
Sbjct: 54 PFRAKQLYQWMHVKLAASFDE--MTNLSKGLRETLGRQCFYASLTPVDVRISAVDGTRKY 111
Query: 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV 146
L +L D +IE+V + + + C+SSQVGC + C FCA+ G RNL E++
Sbjct: 112 LFELSDGNVIESVLMRYKHGN-----SVCISSQVGCRMGCRFCASTLDGLERNLKPSEML 166
Query: 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVP 204
Q+ I+ RV+NVV MG GEPM N +++ L + + I QR +T+ST G+
Sbjct: 167 EQIYRIQRDTGERVSNVVVMGSGEPMDNYDNLIRFIHLLTDENGLNISQRNVTVSTCGIV 226
Query: 205 NTIKKLASYKLQSTLAIR------------------------------------------ 222
I++ A LQ TLA+
Sbjct: 227 PRIRQFAEEGLQVTLALSLHAPNDEVRKTLMPVAKSYALRDVLDACHYYFEKTGRRLTFE 286
Query: 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES 279
GVND +E A LAEL+ + + HVNLIP NPI+ DY++ +KA+ F LE
Sbjct: 287 YSLVKGVNDNLEEARALAELIKD--QHGHVNLIPVNPIKERDYKQSDRKAIEDFKNYLER 344
Query: 280 HKITTSIRQTRGLDASAACGQLRNEF 305
I ++R+ G D ACGQLR +
Sbjct: 345 RGINVTVRREMGRDIDGACGQLRKSY 370
>gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
Length = 377
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 145/277 (52%), Gaps = 61/277 (22%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGTVK +++L D IETV IP E G R T C+SSQVGC L C+FC+T + GF+R
Sbjct: 79 SGDGTVKWVLRLADGNAIETVFIP---ESG--RGTLCISSQVGCALDCTFCSTAQQGFNR 133
Query: 139 NLSSHEIVGQV-LAIE-----EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG 192
NL++ EI+GQV LA++ E + V+NVV MGMGEP+ N +V+ A + + D G
Sbjct: 134 NLTAAEIIGQVWLAMQRLPAPEGRQRAVSNVVLMGMGEPLANYDAVVAACQLMTDDNAYG 193
Query: 193 --QRMITISTVGVPNTIKKLASY--------------KLQSTLA---------------- 220
+R +T+ST G+ + +L+ + +L+ L
Sbjct: 194 LSRRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPNDELRDRLVPINRKYPIARLMESCR 253
Query: 221 ----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR 264
+ AGVND+ EHA +LA +L G +NLIPFNP G+ + R
Sbjct: 254 RYVEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVLR--GIPGKINLIPFNPFPGAPFDR 311
Query: 265 PYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
P + + F L+ T++R+TRG D AACGQL
Sbjct: 312 PAEGDIERFERQLQKAGYVTTVRRTRGDDIDAACGQL 348
>gi|15612390|ref|NP_224043.1| ribosomal RNA large subunit methyltransferase N [Helicobacter
pylori J99]
gi|11387372|sp|Q9ZJI4.1|RLMN_HELPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|4155932|gb|AAD06899.1| putative [Helicobacter pylori J99]
Length = 357
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 157/336 (46%), Gaps = 67/336 (19%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDL---QEAGWTVGRLPIFRTVTAADGTVKL 86
R +Q W +K + + + +F D E +T+ + I + DG+ K
Sbjct: 22 RAKQLYLWLY----AKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKY 77
Query: 87 LIK-LEDNRLIETVGIPVEDEKGPM---------RLTACVSSQVGCPLRCSFCATGKGGF 136
L K L DN E V + ++D+K + T CVS Q+GC + CSFC T KGGF
Sbjct: 78 LFKSLRDNHTFEAVLLKMKDKKIDEETNAVLEGEKYTVCVSCQIGCQVGCSFCFTQKGGF 137
Query: 137 SRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193
R+L + EI+ Q L I+E + N+VFMGMGEP+ NL V +A N +QI
Sbjct: 138 VRDLKASEIIQQALLIKEANNLPIEKALNIVFMGMGEPLNNLDEVCKAVEIFNTGMQISP 197
Query: 194 RMITISTVGVPNTIKKLASYKLQSTLAI---------RSA-------------------- 224
+ ITIST GV + I LA L LAI RS+
Sbjct: 198 KRITISTSGVADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
Query: 225 ----------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268
+ND ++ A +L +LL+ G VNLI FNP EGS ++RP +
Sbjct: 258 PLEQRKRVMFEYLLIKDLNDSLDCAKKLLKLLN--GIKSKVNLILFNPHEGSKFERPSLE 315
Query: 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+ FA L + + +IR+++ LD AACGQLR +
Sbjct: 316 SARMFADFLNAKGLLCTIRESKALDIEAACGQLREK 351
>gi|398841605|ref|ZP_10598816.1| 23S rRNA methyltransferase [Pseudomonas sp. GM102]
gi|398907354|ref|ZP_10653803.1| 23S rRNA methyltransferase [Pseudomonas sp. GM50]
gi|398107918|gb|EJL97908.1| 23S rRNA methyltransferase [Pseudomonas sp. GM102]
gi|398171720|gb|EJM59617.1| 23S rRNA methyltransferase [Pseudomonas sp. GM50]
Length = 382
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 149/305 (48%), Gaps = 66/305 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
+ DGT K ++++ +ETV IP + ++G T CVSSQ GC L CSFC+TGK GF+
Sbjct: 78 STDGTRKWVVRVASGSCVETVYIP-QGKRG----TLCVSSQAGCALDCSFCSTGKQGFNS 132
Query: 139 NLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191
NL++ E++GQV + F +TNVV MGMGEP+LN +V+ A + D+
Sbjct: 133 NLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAMHLMMDDLGY 192
Query: 192 G--QRMITISTVGVPNTIKKLA---------------------------SYKLQSTLA-- 220
G +R +T+ST GV I +L+ Y L+ L
Sbjct: 193 GISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKYPLKMLLESC 252
Query: 221 ---IRSAG--------------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ 263
+ S G +ND+VEHAVE+ ELL +NLIPFNP S Y+
Sbjct: 253 QRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNI--PCKINLIPFNPFPHSGYE 310
Query: 264 RPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEF----QKSPLRIDSSNSSS 319
RP A+ F L ++R TRG D AACGQL + ++S I S+
Sbjct: 311 RPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVLDRTRRSERYIAVRELSA 370
Query: 320 ESDIA 324
E+DIA
Sbjct: 371 ENDIA 375
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,756,203,673
Number of Sequences: 23463169
Number of extensions: 188659336
Number of successful extensions: 448208
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 431321
Number of HSP's gapped (non-prelim): 7739
length of query: 327
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 185
effective length of database: 9,027,425,369
effective search space: 1670073693265
effective search space used: 1670073693265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)