BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043340
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0C9F4|RLMN_ACAM1 Probable dual-specificity RNA methyltransferase RlmN
OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3
SV=1
Length = 351
Score = 264 bits (675), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 152/318 (47%), Positives = 188/318 (59%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G + +P+ +R ++ A VGR I A DGTVK L+K
Sbjct: 34 RGQQVHQWIYQKGV-HSLSDITVLPKQWRTEI--ADIPVGRSQIHHRSAAQDGTVKYLLK 90
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D ++IETVGIP + RLT CVSSQVGCP+ C FCATGKG + RNL+ HEIV QV
Sbjct: 91 LADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQV 145
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV NVVFMGMGEP+LNL+ VL A R LN+DV IGQR +T+STVG+P I K
Sbjct: 146 LTVQEDFQQRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILK 205
Query: 210 LASYKLQSTLA---------IRS------------------------------------A 224
LA ++LQ TLA IR+ +
Sbjct: 206 LAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLEKLLKDCRAYVTQTGRRVTFEYIVLS 265
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVNDQ EHA+ELA H G HVNLIP+NPI DYQRP +K + F +L+S IT
Sbjct: 266 GVNDQTEHALELAH--HLRGFQSHVNLIPYNPISEVDYQRPTQKQLQQFLNSLQSQHITA 323
Query: 285 SIRQTRGLDASAACGQLR 302
SIR++RGLD AACGQLR
Sbjct: 324 SIRRSRGLDKDAACGQLR 341
>sp|Q8DG98|RLMN_THEEB Probable dual-specificity RNA methyltransferase RlmN
OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN
PE=3 SV=1
Length = 337
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 186/319 (58%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W R GA ++ + P+ +R L A +GR I A DGTVKLL+
Sbjct: 24 RGQQLHQWLYRKGA-RSLQEITVFPKQWRAAL--ADVEIGRSEIRYRHDAQDGTVKLLLA 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D IETVGIP D RLT CVSSQVGCP+ C FCATGKGG+ RNL+ HEI+ QV
Sbjct: 81 LADGETIETVGIPSSD-----RLTVCVSSQVGCPMACDFCATGKGGYRRNLACHEILDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L I+ RV++VVFMGMGEP+LNL +VL+A CLN+D+ IGQR ITISTVG+P I++
Sbjct: 136 LTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQR 195
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA ++LQ+TLA+ A
Sbjct: 196 LAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPLSQLIADCRAYVQQTGRRITFEYTVLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND+ +HA ELA+LL G HVNLIP+NPI + YQRP + + F L++ +T
Sbjct: 256 GVNDRPQHAEELAQLLR--GFQSHVNLIPYNPIAEAAYQRPTDQHLRQFLSQLQALGVTA 313
Query: 285 SIRQTRGLDASAACGQLRN 303
SIR++RGLD AACGQLR
Sbjct: 314 SIRRSRGLDRQAACGQLRQ 332
>sp|B0JT33|RLMN_MICAN Probable dual-specificity RNA methyltransferase RlmN OS=Microcystis
aeruginosa (strain NIES-843) GN=rlmN PE=3 SV=1
Length = 337
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/319 (45%), Positives = 182/319 (57%), Gaps = 55/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G + PQ +R+ + A + +GR I A D T K L+K
Sbjct: 24 RGKQLHQWLYEKGVH-SLADISVFPQEWRSKM--ADYPIGRSLIHYRSVAPDRTRKYLLK 80
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IE VGIP E RLT CVSSQVGCP+ C FCATGKGGF+RNL +HEIV QV
Sbjct: 81 LADGLIIEAVGIPSEK-----RLTVCVSSQVGCPMACDFCATGKGGFTRNLKAHEIVDQV 135
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LN+ V+ A CLNKDV IGQR +TISTVG+P+ IK+
Sbjct: 136 LTVQEDFQQRVSHVVFMGMGEPLLNIPEVVTAIHCLNKDVGIGQRCLTISTVGLPHKIKQ 195
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA + LQ T A I A
Sbjct: 196 LAEHNLQITFAVSLHASNQQVRAKLIPSADHYLLSNLIQDCQEYVQITGRRVTFEYILLA 255
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND EHA ELA+L+ G HVNLIP+NPI+ DYQRP +K + AF LE K+
Sbjct: 256 GVNDLPEHARELAKLVK--GFQSHVNLIPYNPIQEVDYQRPDEKRIKAFKTILEQEKVAV 313
Query: 285 SIRQTRGLDASAACGQLRN 303
++R +RGL AACGQLR+
Sbjct: 314 TVRYSRGLATDAACGQLRS 332
>sp|Q2JRQ8|RLMN_SYNJA Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1
Length = 356
Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 187/327 (57%), Gaps = 56/327 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W G ++ + P+++R LQE + VGR + + + + DGTVK L++
Sbjct: 29 RGQQLHTWLYHKGI-RSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQ 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D LIETVGIP RLT CVSSQVGCP+ C+FCATGK G+ RNL HEI+ QV
Sbjct: 86 LADGELIETVGIPTA-----RRLTVCVSSQVGCPMACNFCATGKMGYRRNLKLHEILDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV++VVFMGMGEP+LN +V++A R LN+D+ IGQR IT+STVGVP I
Sbjct: 141 LTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPW 200
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA LQ TLA+ A
Sbjct: 201 LAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLDALIQDCRDYMLCSGRRISFEYTLLA 260
Query: 225 GVNDQVEHAVELAELLH---EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
GVND HA +LA LL + G HVNLIP+NPI +DYQRP+ V F LE H
Sbjct: 261 GVNDLPIHARQLAHLLRQASQAGARLHVNLIPYNPIAEADYQRPHPTRVAEFVRLLEEHH 320
Query: 282 ITTSIRQTRGLDASAACGQLRNEFQKS 308
+ S+RQTRGLD++AACGQLR F ++
Sbjct: 321 VQVSVRQTRGLDSNAACGQLRGSFLRA 347
>sp|Q7NIV3|RLMN_GLOVI Probable dual-specificity RNA methyltransferase RlmN OS=Gloeobacter
violaceus (strain PCC 7421) GN=rlmN PE=3 SV=1
Length = 348
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/294 (46%), Positives = 174/294 (59%), Gaps = 54/294 (18%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P+++R + VGR + R AADGT+K L+ D +ETVGIP + RLT
Sbjct: 49 PKAWREQVHSV--PVGRSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-----RLT 101
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML 173
CVSSQVGCP+ C FCATG+ GF+RNL HEIV QVL ++E F RV++VVFMGMGEP+L
Sbjct: 102 VCVSSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLL 161
Query: 174 NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------- 222
NL +V++A R LN D+ IGQR IT+STVGVP I++L +YKLQ TLA+
Sbjct: 162 NLGAVVQALRVLNGDIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLK 221
Query: 223 ----------------------------------SAGVNDQVEHAVELAELLHEWGRGHH 248
AG+ND+ HA ELA +L G H
Sbjct: 222 LIPTAQHYPIEELLEDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAILR--GFQSH 279
Query: 249 VNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
VNLIP+NPIEG +Y+RP + V AF L HKI S+R TRGL+ +AACGQLR
Sbjct: 280 VNLIPYNPIEGVEYERPGEARVRAFERELVRHKIAASVRHTRGLEEAAACGQLR 333
>sp|Q2JMN2|RLMN_SYNJB Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rlmN
PE=3 SV=1
Length = 352
Score = 248 bits (634), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 186/327 (56%), Gaps = 56/327 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G ++ + P+++R +Q + VGR I + A DGTVK L+
Sbjct: 29 RGQQLHAWIYQKGI-RSLEQVTVFPRAWREAVQS--YPVGRSRIVQRTEARDGTVKFLLG 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +LIETVGIP RLT CVSSQVGCP+ C FCATGK G+ RNL HEI+ QV
Sbjct: 86 LADGQLIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV++VVFMGMGEP+LN +V++A R LN+D+ IGQR IT+STVGVP I
Sbjct: 141 LTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAW 200
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA LQ TLA+ +
Sbjct: 201 LAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLDTLIQDCRDYMLRTGRRVSFEYTLLS 260
Query: 225 GVNDQVEHAVELAELLHEWGRGH---HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHK 281
GVND HA +LA+LL + R HVNLIP+NPI +DYQRP+ V F LE H+
Sbjct: 261 GVNDLPIHARQLAQLLQQASRSGVQLHVNLIPYNPISEADYQRPHPTRVREFVRQLEQHQ 320
Query: 282 ITTSIRQTRGLDASAACGQLRNEFQKS 308
+ ++RQTRGLD +AACGQLR F +S
Sbjct: 321 VRATVRQTRGLDGNAACGQLRGSFLRS 347
>sp|Q110I1|RLMN_TRIEI Probable dual-specificity RNA methyltransferase RlmN
OS=Trichodesmium erythraeum (strain IMS101) GN=rlmN PE=3
SV=1
Length = 345
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/318 (44%), Positives = 184/318 (57%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA K+ + +R ++ + + +GR I A D TVK L+K
Sbjct: 34 RGKQLYQWIYQKGA-KSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLK 90
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGGFSRNL +HEI+ QV
Sbjct: 91 LSDGNIIETVGIPTYK-----RLTVCVSSQVGCPMACDFCATGKGGFSRNLEAHEIIDQV 145
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV+++VFMGMGEP+LN K+VL A R LN+D+ IGQR+ITIST G+ + I++
Sbjct: 146 LTVQEDFERRVSHIVFMGMGEPLLNTKNVLAAVRSLNQDLGIGQRLITISTSGIRDRIRQ 205
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA +KLQ TLA I A
Sbjct: 206 LAQHKLQVTLAVSLHASNQRLREHLIPSAKFYPLADLISECREYVKITKRRISFEYILLA 265
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
ND +HA ELA+ + G HVNLIP+NPI DYQRP ++ + FA AL I
Sbjct: 266 SFNDLPDHARELAKNMR--GFQCHVNLIPYNPISEVDYQRPTQEMIKTFANALAEQNIAV 323
Query: 285 SIRQTRGLDASAACGQLR 302
SIR +RGL+A+AACGQLR
Sbjct: 324 SIRYSRGLEANAACGQLR 341
>sp|B1WU13|RLMN_CYAA5 Probable dual-specificity RNA methyltransferase RlmN OS=Cyanothece
sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1
Length = 343
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 185/318 (58%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G ++ P+++R +L++ + +GR I A D T K L+
Sbjct: 29 RGKQLHQWLYQKGV-RSLTEISVFPKAWREELKD--YPIGRSNIVHCTIAPDQTRKYLLS 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGG++RNL+ EIV QV
Sbjct: 86 LGDGLIIETVGIPTSK-----RLTVCVSSQVGCPMNCDFCATGKGGYTRNLTCAEIVDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F+ RV++VVFMGMGEP+LNLK V++A + LN+DV IGQR +TISTVGVP I +
Sbjct: 141 LTVQEDFQRRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGVPKKILE 200
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA ++LQ T A I
Sbjct: 201 LAHHQLQVTFAVSLHAANQTLREQLIPSAKSYPLPKLLADCRKYVEITGRRVTFEYILLG 260
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND E ++LA+ L G HVNLIP+NPIE +DYQRP +++ F LE HKI
Sbjct: 261 GVNDLPEQGIQLAKCLT--GFQSHVNLIPYNPIEEADYQRPDGESINRFKSILEEHKIAV 318
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 319 SVRYSRGLEANAACGQLR 336
>sp|B7K4N4|RLMN_CYAP8 Probable dual-specificity RNA methyltransferase RlmN OS=Cyanothece
sp. (strain PCC 8801) GN=rlmN PE=3 SV=1
Length = 340
Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 186/319 (58%), Gaps = 57/319 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPI-FRTVTAADGTVKLLI 88
RG+Q W GA ++ P+++R L + +GR I +RTV A D T K L+
Sbjct: 29 RGKQLHQWLYEKGA-RSLDEISVFPKTWREKL--INYPIGRSTIDYRTV-APDATRKYLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGG+ R+L +HEIV Q
Sbjct: 85 CLGDGLIIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKGGYQRHLRAHEIVDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
VL ++E F+ RV++VVFMGMGEP+LNL+ V+++ + LN+D+ IGQR +TISTVG+P I
Sbjct: 140 VLTVQEDFQRRVSHVVFMGMGEPLLNLEEVVKSVKILNQDIGIGQRSLTISTVGLPQKII 199
Query: 209 KLASYKLQSTLAIR---------------------------------------------S 223
+LA + LQ TLA+
Sbjct: 200 QLAHHHLQVTLAVSLHASNQPLRETLIPSAQHYTLKNLLADCREYVNITGRRISFEYVLL 259
Query: 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283
GVND E A+ELA LL G HVNLIP+NPI+ +DYQRP + + F LE HKI
Sbjct: 260 GGVNDLPEQAIELANLLK--GFQSHVNLIPYNPIDEADYQRPNQTQIQTFVQVLEQHKIA 317
Query: 284 TSIRQTRGLDASAACGQLR 302
S+R +RGL+A+AACGQLR
Sbjct: 318 VSVRYSRGLEANAACGQLR 336
>sp|Q7U8K0|RLMN_SYNPX Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain WH8102) GN=rlmN PE=3 SV=1
Length = 344
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 182/332 (54%), Gaps = 59/332 (17%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RGRQ W GA ++ +P+++R L+E G VGRL AAD T KLL
Sbjct: 21 PFRGRQLHDWLYAKGA-RSLSEITVLPKAWRESLKEDGVEVGRLKEVHRSVAADATTKLL 79
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ +D IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV
Sbjct: 80 LSTDDGETIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLRTHEIVD 134
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL++ E+ R +++VFMGMGEP+LN ++VL+A RCLN D+ IGQR IT+STVGVP T+
Sbjct: 135 QVLSVREVMDRRPSHIVFMGMGEPLLNSQAVLDAIRCLNDDLGIGQRRITVSTVGVPKTL 194
Query: 208 KKLASYKL------QSTLA----------------------------------------- 220
+LA L Q TLA
Sbjct: 195 PQLAELALATLGRAQFTLAVSLHAPNQALREELIPTAHAYPYEALLEDCRHYLAVTGRRV 254
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I G+ND EHA ELA+ + G HVNLI +NPIE ++QRP + + F
Sbjct: 255 SFEYILLGGLNDAPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFQRPTRARIEGFQRV 312
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
LE + S+R +RGLD +AACGQLR Q S
Sbjct: 313 LERRGVAVSLRASRGLDQNAACGQLRRRRQGS 344
>sp|Q3M9B9|RLMN_ANAVT Probable dual-specificity RNA methyltransferase RlmN OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3
SV=1
Length = 355
Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 170/282 (60%), Gaps = 52/282 (18%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+GR I A+DGTVK L++L D ++ETVGIP + RLT CVS+QVGCP+ C
Sbjct: 78 IGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTDK-----RLTVCVSTQVGCPMACD 132
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
FCATGKGG+ RNL HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL A R LN+
Sbjct: 133 FCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAALRSLNQ 192
Query: 188 DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS------- 223
DV IGQR +T+STVG+ + I +LA + LQ TLA+ RS
Sbjct: 193 DVGIGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLL 252
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVND EHA+EL++ H G +HVNLIP+NPI DY
Sbjct: 253 AECREYVAITGRRISFEYILLAGVNDLPEHALELSK--HLRGFQNHVNLIPYNPISEVDY 310
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+RP + AF L+ I S+R +RGL+A AACGQLR +
Sbjct: 311 KRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTK 352
>sp|A9BCH2|RLMN_PROM4 Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain MIT 9211) GN=rlmN
PE=3 SV=1
Length = 356
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 180/329 (54%), Gaps = 59/329 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + G K +P+ +R L + G GRL + + A DGT+KLL++
Sbjct: 34 RGRQIHEWLYQKGVRKLEE-ISVLPKLWRTTLSDQGVCTGRLEEVKRLVANDGTIKLLLE 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE VGIP RLT CVSSQVGC + C FCATGKGGF R+L HEIV QV
Sbjct: 93 TSDRESIEAVGIPTNS-----RLTTCVSSQVGCSMGCRFCATGKGGFQRSLEVHEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L+I E F R +++VFMGMGEP+LN++SVLE+ CLN D+ IGQR IT+STVGV NT+ +
Sbjct: 148 LSIREAFDRRPSHIVFMGMGEPLLNIESVLESISCLNNDLGIGQRRITVSTVGVVNTLPQ 207
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA L Q TLA
Sbjct: 208 LAELALAKLGRVQFTLALSLHAPNQHLREMLVPSAKVYPIQDLLSDCRHYLDITGRRISF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I A VND+VEHA ELA+L+ G HVNLI +NPI+ DYQRP + F L+
Sbjct: 268 EYILLATVNDKVEHAEELADLIS--GFQSHVNLIAYNPIDEEDYQRPSLARINRFMTVLQ 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQK 307
S + S+R +RGLD AACGQLR++ +
Sbjct: 326 SRGVAVSLRASRGLDQDAACGQLRHQHTR 354
>sp|Q3AHX9|RLMN_SYNSC Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain CC9605) GN=rlmN PE=3 SV=1
Length = 351
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/333 (43%), Positives = 183/333 (54%), Gaps = 60/333 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RGRQ W + A +++ P+++R L EAG VGRL A D T KLL
Sbjct: 24 PFRGRQLHDW-IYAKGARSLADITVFPKTWRAALVEAGVDVGRLKEVHHSVATDATTKLL 82
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ ED IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV
Sbjct: 83 LSTEDGETIETVGIPTD-----QRLTVCVSSQVGCPMACRFCATGKGGLQRSLQTHEIVD 137
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL++ E R +++VFMGMGEP+LN +VLEA RCLN D+ IGQR IT+STVGVP T+
Sbjct: 138 QVLSVREAMDRRPSHIVFMGMGEPLLNSSAVLEAIRCLNDDLGIGQRRITVSTVGVPKTL 197
Query: 208 KKLASYKLQS------TLA----------------------------------------- 220
+LA +Q TLA
Sbjct: 198 PQLAELAMQRLGRAQFTLAVSLHAPNQRLREELIPTAHAYPYDALLEDCRHYLDVTGRRV 257
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I G+NDQ EHA ELA+ + G HVNLI +NPIE +++RP + + AF
Sbjct: 258 SFEYILLGGLNDQPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFKRPTPQRIEAFRRV 315
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEFQKSP 309
LE + S+R +RGLD +AACGQLR + Q +P
Sbjct: 316 LERRGVAVSLRASRGLDQNAACGQLRRQ-QMAP 347
>sp|B1XQH8|RLMN_SYNP2 Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=rlmN PE=3 SV=1
Length = 346
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 183/324 (56%), Gaps = 55/324 (16%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + G P+++R Q + VGR I TA DGT K L++
Sbjct: 27 RGKQLYNWLYQKGIHDLSE-ITVFPKAWRE--QMGTYPVGRSQIHHQRTAPDGTRKYLLQ 83
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP E RLT CVSSQVGC + C FCATGK GF+R+L +HEI+ QV
Sbjct: 84 LHDGLIIETVGIPTEK-----RLTVCVSSQVGCAMACDFCATGKSGFTRHLQAHEIIDQV 138
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++ F+ RV++VVFMGMGEP+ NL+ VL++ + LN+D+ IGQR +T+STVGVP+ I+
Sbjct: 139 LTVQTDFQQRVSHVVFMGMGEPLANLEQVLKSIQSLNQDIGIGQRSLTVSTVGVPDQIRA 198
Query: 210 LASYKLQSTLA---------------------------------------------IRSA 224
LA LQ TLA I A
Sbjct: 199 LAQQNLQITLAVSLHAPNQALRESIIPTAVHYPIEALLDECREYVAITRRRLSFEYILLA 258
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVND +HA ELA+ L G HVNLIP+NPI +QRP KK + F L+ HKI
Sbjct: 259 GVNDLPDHAAELAKKLK--GFQSHVNLIPYNPITEVPFQRPGKKRINVFKQILQDHKIAV 316
Query: 285 SIRQTRGLDASAACGQLRNEFQKS 308
S+R ++GL+A AACGQLR+ ++S
Sbjct: 317 SVRYSKGLEADAACGQLRSNLRRS 340
>sp|Q55880|RLMN_SYNY3 Probable dual-specificity RNA methyltransferase RlmN
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rlmN
PE=3 SV=1
Length = 350
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 177/318 (55%), Gaps = 55/318 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RG+Q W + GA ++ +P+ +R + + +GR I A D T K L++
Sbjct: 29 RGKQIHQWLYQKGA-RSLTAMTDLPKVWRE--KNVHYPIGRSVIDHCAVAPDHTRKYLLR 85
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
L D +IETVGIP RLT CVSSQVGC + C+FCATGKGGF RNL SHEIV QV
Sbjct: 86 LADGLIIETVGIP-----SSKRLTVCVSSQVGCAMDCNFCATGKGGFIRNLESHEIVDQV 140
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L ++E F RV+NVVFMGMGEP+LNL V++A CLN+ V IGQR +TISTVG+P I++
Sbjct: 141 LTVQEEFHERVSNVVFMGMGEPLLNLPQVVKAVECLNQVVGIGQRALTISTVGLPGKIRQ 200
Query: 210 LASYKLQSTLAIR---------------------------------------------SA 224
LA LQ T A+ A
Sbjct: 201 LADRHLQVTFAVSLHAPNQTLRQSLIPSARHYPLEQLLADCRAYVETTGRRVTFEYVLLA 260
Query: 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284
GVNDQ HA ELA+ L G HVNLIP+NPI DYQRP + + FA L H+I
Sbjct: 261 GVNDQPVHAEELAQKLR--GFQTHVNLIPYNPISEVDYQRPTEAQINQFAQVLSDHRIAV 318
Query: 285 SIRQTRGLDASAACGQLR 302
S+R +RG+ A AACGQLR
Sbjct: 319 SVRYSRGVQADAACGQLR 336
>sp|Q31MD1|RLMN_SYNE7 Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus elongatus (strain PCC 7942) GN=rlmN
PE=3 SV=1
Length = 361
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/300 (45%), Positives = 175/300 (58%), Gaps = 60/300 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P+++R LQ VGR I + GT+K L++L D +IE VGIP D RLT
Sbjct: 61 PKAWRQSLQAV--PVGRSQIVDRSVSPSGTIKYLLRLHDGEIIEAVGIPSGD-----RLT 113
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML 173
CVSSQ+GC + C FCATGKGGF R+L+ HEI+ QVL ++E ++ RV+N+VFMGMGEP+L
Sbjct: 114 VCVSSQLGCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLL 173
Query: 174 NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLA------- 220
NL +VL A RCLN+D+ IGQR IT+STVG+P I++LA K LQ TLA
Sbjct: 174 NLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPN 233
Query: 221 --------------------------------------IRSAGVNDQVEHAVELAELLHE 242
I AG+NDQ E A +LA+LL
Sbjct: 234 QAIRDRLIPSSRHYPITDLLQECRDYVQITGRRVTFEYILLAGLNDQPEQAEQLAQLLR- 292
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP+NPI+ +YQRP K V AFA AL ++ ++R ++GL A AACGQLR
Sbjct: 293 -GFQSHVNLIPYNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAACGQLR 351
>sp|B2J6D0|RLMN_NOSP7 Probable dual-specificity RNA methyltransferase RlmN OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3
SV=1
Length = 364
Score = 238 bits (607), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/283 (44%), Positives = 169/283 (59%), Gaps = 50/283 (17%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKG---PMRLTACVSSQVGCPL 124
+GR + A DGTVK L++L D ++IETVGIP E+G RLT CVS+QVGCP+
Sbjct: 80 IGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQVGCPM 139
Query: 125 RCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRC 184
C FCATGKGG+ RNL+ HEI+ QVL ++E F+ RV+NVVFMG+GEP+LN ++VL A +
Sbjct: 140 ACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENVLAALKS 199
Query: 185 LNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------------------- 222
LN+D+ IGQR +T+STVG+ + I++ A LQ TLA+
Sbjct: 200 LNQDIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVSLHAPNQALREKLIPSARAYPLE 259
Query: 223 -----------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259
AGVND EHA+EL++ + G HVNLIP+NPI+
Sbjct: 260 ELLAECREYVEITGRRVTFEYVLLAGVNDLPEHALELSKCMR--GFQSHVNLIPYNPIQE 317
Query: 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
DY+RP + + AF L+ S+R +RGL+A AACGQLR
Sbjct: 318 VDYKRPNRDRIEAFVNVLKQQNTAVSVRYSRGLEADAACGQLR 360
>sp|A5GNG9|RLMN_SYNPW Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain WH7803) GN=rlmN PE=3 SV=1
Length = 351
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 180/329 (54%), Gaps = 59/329 (17%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA + +P+++R LQ+ G +GRL A D T KLL+
Sbjct: 31 RGRQLHDWLYAKGACDLQD-ITVLPKAWRASLQDKGVIIGRLKEQDRKVAGDATTKLLLG 89
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+D +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV QV
Sbjct: 90 TDDGETLETVGIPTD-----QRLTVCVSSQVGCPMACRFCATGKGGLQRSLYTHEIVAQV 144
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E+ + R ++VVFMGMGEP+LN+++VL+A RCLN D+ IGQR IT+STVGVP T+ +
Sbjct: 145 LSVREVMERRPSHVVFMGMGEPLLNIEAVLDAIRCLNDDLGIGQRRITVSTVGVPRTLPR 204
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 205 LAELAMERLGRAQFTLAVSLHAPNQSLREELIPTAHAYPYDALLDDCRHYLAITGRRVSF 264
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND HA ELA+ + G HVNLI +NPIE ++QRP + + F LE
Sbjct: 265 EYILLGGLNDHPAHAEELADRV--GGFQSHVNLIAYNPIEEEEFQRPTRDRIEGFRRVLE 322
Query: 279 SHKITTSIRQTRGLDASAACGQLRNEFQK 307
S + S+R +RGLD AACGQLR QK
Sbjct: 323 SRGVAVSLRASRGLDQDAACGQLRRSRQK 351
>sp|Q8YZV0|RLMN_NOSS1 Probable dual-specificity RNA methyltransferase RlmN OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rlmN PE=3 SV=2
Length = 355
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/282 (45%), Positives = 168/282 (59%), Gaps = 52/282 (18%)
Query: 68 VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS 127
+GR I A+DGTVK L++L D ++E VGIP + RLT CVS+QVGCP+ C
Sbjct: 78 IGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTDK-----RLTVCVSTQVGCPMACD 132
Query: 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187
FCATGKGG+ RNL HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL R LN+
Sbjct: 133 FCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQ 192
Query: 188 DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI-----------------RS------- 223
DV IGQR +T+STVG+ + I +LA + LQ TLA+ RS
Sbjct: 193 DVGIGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIEDLL 252
Query: 224 ---------------------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262
AGVND EHA+EL++ H G +HVNLIP+N I+ DY
Sbjct: 253 AECREYVAITGRRISFEYILLAGVNDLPEHALELSK--HLRGFQNHVNLIPYNSIDEVDY 310
Query: 263 QRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
+RP + AF L+ I S+R +RGL+A AACGQLR +
Sbjct: 311 KRPSGDRIQAFLTVLQQQHIAVSVRYSRGLEADAACGQLRTK 352
>sp|Q0I7M1|RLMN_SYNS3 Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1
Length = 346
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 180/324 (55%), Gaps = 59/324 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + A + + +P+++R LQ G +VGRL +AD T KLL+
Sbjct: 26 RGRQLHDW-LYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLG 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
ED +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L+ HEIV QV
Sbjct: 85 TEDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAGHEIVAQV 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L+I E+ + R ++VVFMGMGEP+LN+++VLE+ RCLN D+ IGQR IT+STVGVP+T+ +
Sbjct: 140 LSIREVMERRPSHVVFMGMGEPLLNIEAVLESIRCLNDDLGIGQRRITVSTVGVPHTLPR 199
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA L Q TLA
Sbjct: 200 LADLALKQLGRAQFTLAVSLHAPNQALREELIPTAKTYPYDALLDDCRYYLNKTGRRVSF 259
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I GVND HA ELA+ + G HVNLI +NPIE ++QRP + + F LE
Sbjct: 260 EYILLGGVNDHPHHASELADRV--GGFQSHVNLIAYNPIEEEEFQRPTTQRIEGFRRVLE 317
Query: 279 SHKITTSIRQTRGLDASAACGQLR 302
+ S+R +RGLD AACGQLR
Sbjct: 318 RRGVAVSLRASRGLDQDAACGQLR 341
>sp|Q5MZJ6|RLMN_SYNP6 Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=rlmN PE=3 SV=1
Length = 351
Score = 234 bits (597), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 174/300 (58%), Gaps = 60/300 (20%)
Query: 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLT 113
P+++R LQ VGR I + G++K L++L D +IE VGIP D RLT
Sbjct: 51 PKAWRQSLQAV--PVGRSQIVDRSVSPSGSIKYLLRLHDGEIIEAVGIPSGD-----RLT 103
Query: 114 ACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML 173
CVSSQ+GC + C FCATGKGGF R+L+ HEI+ QVL ++E ++ RV+N+VFMGMGEP+L
Sbjct: 104 VCVSSQLGCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLL 163
Query: 174 NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLA------- 220
NL +VL A RCLN+D+ IGQR IT+STVG+P I++LA K LQ TLA
Sbjct: 164 NLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPN 223
Query: 221 --------------------------------------IRSAGVNDQVEHAVELAELLHE 242
I AG+NDQ E A +LA+LL
Sbjct: 224 QAIRDRLIPSSRHYPITDLLQECRDYVQITGRRVTFEYILLAGLNDQPEQAEQLAQLLR- 282
Query: 243 WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G HVNLIP NPI+ +YQRP K V AFA AL ++ ++R ++GL A AACGQLR
Sbjct: 283 -GFQSHVNLIPCNPIDEVEYQRPSKARVDAFADALRQQRVAVTVRWSKGLGADAACGQLR 341
>sp|Q3AZA0|RLMN_SYNS9 Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1
Length = 351
Score = 231 bits (588), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 177/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W G K+ +P+ +R +L+ + VGRL + AAD T KLL+
Sbjct: 26 RGRQIHDWLYNKGV-KSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLA 84
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
+D IETVGIP + RLT C+SSQVGCP+ C FCATGK G R+L++HEIV QV
Sbjct: 85 TDDGETIETVGIPTD-----QRLTVCISSQVGCPMACRFCATGKSGLQRSLATHEIVDQV 139
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E R ++VVFMGMGEP+LN ++VLE RCLN D+ IGQR IT+STVGVP T+ +
Sbjct: 140 LSVREAMDRRPSHVVFMGMGEPLLNSEAVLETIRCLNTDLGIGQRRITVSTVGVPKTLPQ 199
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 200 LAELAMEKLGRAQFTLAVSLHAPNQQLREELIPTAHAYPYDDLLDDCRHYLDLTGRRVSF 259
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +ND EHA ELA+ + G HVNLI +NPIE +++RP + + AF LE
Sbjct: 260 EYILLGELNDHPEHAAELADRV--GGFQSHVNLIAYNPIEEEEFKRPTSQRIEAFRRVLE 317
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ S+R +RGLD +AACGQLR +
Sbjct: 318 RRGVAVSLRASRGLDQNAACGQLRRQ 343
>sp|A2C6T3|RLMN_PROM3 Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain MIT 9303) GN=rlmN
PE=3 SV=1
Length = 356
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 179/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA ++ +P+S+R LQ+ G T+GRL A D T KLL+
Sbjct: 34 RGRQLHDWLYAKGA-RSFDAITVLPKSWRISLQQRGLTIGRLLEVNRAVAVDDTTKLLLA 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE+VGIP + RLT C+SSQVGCP+ C FCA+GKGG R+L++HEIV QV
Sbjct: 93 TVDGETIESVGIPTQQ-----RLTVCLSSQVGCPMACRFCASGKGGLQRSLATHEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E R ++VVFMGMGEP+LN+++VL + RCLN D+ I QR IT+STVGVP+T+ +
Sbjct: 148 LSLREAMDRRPSHVVFMGMGEPLLNIEAVLASIRCLNIDLGIAQRRITVSTVGVPHTLPQ 207
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 208 LAELAMKRLGRAQFTLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGRRVTF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +NDQ +HA ELAE + G HVNLI +NPI+ +QRP + + AF LE
Sbjct: 268 EYILLGALNDQPQHAEELAERVR--GFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ S+R +RGLD +AACGQLR +
Sbjct: 326 QRGVAVSLRASRGLDQNAACGQLRRQ 351
>sp|Q7V5P5|RLMN_PROMM Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain MIT 9313) GN=rlmN
PE=3 SV=1
Length = 356
Score = 225 bits (573), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 178/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W GA ++ +P+S+R LQ+ G T+GRL A D T KLL+
Sbjct: 34 RGRQLHEWLYAKGA-RSFEAITVLPKSWRLSLQQRGITIGRLLEVNRAVAVDDTTKLLLA 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D IE+VGIP + RLT C+SSQVGCP+ C FCA+GKGG R+L++HEIV QV
Sbjct: 93 TVDGETIESVGIPTQQ-----RLTVCLSSQVGCPMACRFCASGKGGLQRSLATHEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
L++ E R ++VVFMGMGEP+LN+++VL A RCLN D+ I QR IT+STVGVP+T+
Sbjct: 148 LSLREAMDRRPSHVVFMGMGEPLLNIEAVLAAIRCLNIDLGIAQRRITVSTVGVPHTLPH 207
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA + Q TLA
Sbjct: 208 LAELAMKRLGRAQFTLAVSLHAPNQELRERLIPTACAYPFETLLQDCRHYLAVTGRRVTF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +NDQ +HA ELA+ + G HVNLI +NPI+ +QRP + + AF LE
Sbjct: 268 EYILLGALNDQPQHAEELADRVR--GFQSHVNLIAYNPIDDEGFQRPNPETIEAFRRVLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ S+R +RGLD +AACGQLR +
Sbjct: 326 QRGVAVSLRASRGLDQNAACGQLRRQ 351
>sp|Q46J26|RLMN_PROMT Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain NATL2A) GN=rlmN PE=3
SV=1
Length = 359
Score = 224 bits (571), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 177/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + GA K+ +P+ +R+ L G +GRL V A D T+KLL+
Sbjct: 34 RGRQIHEWIYQRGA-KSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EIV QV
Sbjct: 93 TFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
+++ E R T+VVFMGMGEP+LN+++VL++ CL D+ IGQR IT+STVG+PNT+
Sbjct: 148 ISVRETMNRRPTHVVFMGMGEPLLNIRNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSD 207
Query: 210 LA----------------------------------SYKLQSTLA--------------- 220
LA SY + S L
Sbjct: 208 LAKLAQDRLGRVKFTLAVSLHAPNQTLRELIIPSASSYPINSLLKDCKKYIELTGRRVSF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND+ HA +LA L+ G HVNLI +NPI +++RP + V AF LE
Sbjct: 268 EYILLGGLNDKDIHAEQLANLMR--GFQSHVNLIAYNPIAEENFKRPSQSRVNAFRELLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ + S+R +RG D AACGQLR +
Sbjct: 326 NRGVAVSVRASRGRDKDAACGQLRRQ 351
>sp|A2C4M8|RLMN_PROM1 Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3
SV=1
Length = 359
Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 178/326 (54%), Gaps = 59/326 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + GA K+ +P+ +R+ L G +GRL V A D T+KLL+
Sbjct: 34 RGRQIHEWIYQRGA-KSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMG 92
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EIV QV
Sbjct: 93 TFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQV 147
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
+++ E R T+VVFMGMGEP+LN+++VL++ CL D+ IGQR IT+STVG+PNT+
Sbjct: 148 ISVRETMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSD 207
Query: 210 LASY------KLQSTLA------------------------------------------- 220
LA ++Q TLA
Sbjct: 208 LAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSASSYPINSLLKDCKKYIDLTGRRVSF 267
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I G+ND+ HA +LA L+ G HVNLI +NPI +++RP + V AF LE
Sbjct: 268 EYILLGGLNDKDIHAEQLANLMR--GFQSHVNLIAYNPIAEENFKRPSQSRVNAFRELLE 325
Query: 279 SHKITTSIRQTRGLDASAACGQLRNE 304
+ + S+R +RG D AACGQLR +
Sbjct: 326 NRGVAVSVRASRGRDKDAACGQLRRQ 351
>sp|Q7VA32|RLMN_PROMA Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=rlmN PE=3 SV=1
Length = 348
Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 175/325 (53%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W + G +P+++RN L + G +VG L A D T+KLL+
Sbjct: 29 RGRQLHQWLYQKGVDNLDD-ITVLPKAWRNSLIQKGISVGGLVEVNRFIAGDRTIKLLLS 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +IETVGIP + RLT CVSSQ+GCP+ C FCATGK G R+L +EIV QV
Sbjct: 88 TGDGEIIETVGIPSGN-----RLTICVSSQIGCPMGCQFCATGKDGLKRSLKVNEIVAQV 142
Query: 150 LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209
A+++ F +NVVFMGMGEP+LN++ VL + CLNKD+ IGQR IT+STVGV NT+ +
Sbjct: 143 FAVKKAFNRSPSNVVFMGMGEPLLNIEEVLSSICCLNKDLGIGQRRITVSTVGVKNTLPQ 202
Query: 210 LASYKL------QSTLA------------------------------------------- 220
LA L Q TLA
Sbjct: 203 LAELALQFLGSVQFTLALSLHAPNQKLRESLIPSAQNYPIKLLLEDCRHYLDLTGRRVSF 262
Query: 221 --IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278
I +ND +EHA ELA+L+ G HVNLI +NPI+G +QRP + V F L+
Sbjct: 263 EYILLGHLNDHIEHAEELADLV--GGFQSHVNLIAYNPIDGESFQRPSNQRVNIFIKTLQ 320
Query: 279 SHKITTSIRQTRGLDASAACGQLRN 303
I S+R +RGLD +AACGQLR+
Sbjct: 321 KRGIVVSLRASRGLDKNAACGQLRS 345
>sp|A8G6Y2|RLMN_PROM2 Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain MIT 9215) GN=rlmN
PE=3 SV=1
Length = 348
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 177/325 (54%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + K+ + +P FR L++ G+ + L + A DGT+KLL+
Sbjct: 25 RGRQIHNWIYNYRNKKKSIDQIEALPLDFRKKLKDDGFKLSELSVQERNLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 SANDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +NKD QI QR IT+STV VP I
Sbjct: 140 ILFIENEMNRKVTNIVFMGMGEPLLNIDDLLVSIRSINKDFQISQRKITVSTVAVPKMIN 199
Query: 209 KLA--SYKL----QSTLAIR---------------------------------------- 222
KL+ S+++ Q TLAI
Sbjct: 200 KLSAKSFQILGNCQFTLAISLHASNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGRRVS 259
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
+GVND++EHA EL+ LL G HVNLI +N I+ ++QR K++ +F L
Sbjct: 260 FEYLMLSGVNDKLEHANELSNLLR--GFQCHVNLIQYNQIDEVEFQRTSLKSLQSFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
+ I S+R++RGLD +AACGQLR
Sbjct: 318 SHNGIAVSLRKSRGLDKNAACGQLR 342
>sp|A3PEX0|RLMN_PROM0 Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain MIT 9301) GN=rlmN
PE=3 SV=1
Length = 347
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 176/325 (54%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + K + +P FR L++ G+ V L I A DGT+KLL+
Sbjct: 25 RGRQIYNWIYNYRNKKKNIDQIEVLPLDFRKRLKDDGFKVSDLSIHERNLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
EDN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L EI+ Q
Sbjct: 85 STEDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKVSEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N+D++I QR IT+STV VP I
Sbjct: 140 ILFIENEMNRKVTNIVFMGMGEPLLNIDDLLLSIRSINEDLKISQRKITVSTVAVPKMIN 199
Query: 209 KLA--SYKL----QSTLA---------IRSA----------------------------- 224
KL+ S+K+ Q TLA IR
Sbjct: 200 KLSAKSFKILGNCQFTLAVSLHAPNQKIRETIIPSAKNYEIENIIEDCKQYVRDTGRRVS 259
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
GVND++EHA EL+ LL G HVNLI +N I+ ++QR K + +F L
Sbjct: 260 FEYLMLRGVNDKIEHANELSHLLK--GFQCHVNLIQYNQIDEVEFQRACLKDLQSFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
+ I S+R++RGLD +AACGQLR
Sbjct: 318 SHNGIAVSLRKSRGLDKNAACGQLR 342
>sp|A2BT57|RLMN_PROMS Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain AS9601) GN=rlmN PE=3
SV=1
Length = 348
Score = 220 bits (561), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 175/325 (53%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + +K + +P FR L+ G+ V L I A DGT+KLL+
Sbjct: 25 RGRQIYNWIYNYRNKNKNIDQIEVLPLDFREKLKVDGFKVSELVIKERNLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
EDN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 STEDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N D QI QR IT+STV +P I
Sbjct: 140 ILFIEYEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINNDFQISQRKITVSTVAIPKMIS 199
Query: 209 KLA--SYKL----QSTLAIR---------------------------------------- 222
KL+ S+++ Q TLAI
Sbjct: 200 KLSAKSFQILSNCQFTLAISLHASNQKTRETIIPSAKNYEIKNIIEDCKTFVRETGRRVS 259
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
+GVND++EHA EL+ LL G HVNLI +N I+ ++QR K + F L
Sbjct: 260 FEYLMLSGVNDKLEHACELSNLLK--GFQCHVNLIQYNQIDEVEFQRTSLKNLQLFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
++ I S+R++RGLD +AACGQLR
Sbjct: 318 VNNGIAVSLRKSRGLDKNAACGQLR 342
>sp|Q318R1|RLMN_PROM9 Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain MIT 9312) GN=rlmN
PE=3 SV=1
Length = 348
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 175/325 (53%), Gaps = 59/325 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + +K + +P FR L++ G+ V L A DGT+KLL+
Sbjct: 25 RGRQIYSWIYNYRNKNKNIDQIEVLPLDFRKKLKDDGFKVSELSFQEKKLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN IE VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 STNDNESIECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N+D QI QR IT+STV VP +
Sbjct: 140 ILFIENEMNRKVTNIVFMGMGEPLLNIDELLLSIRSINEDFQISQRKITVSTVAVPKMMS 199
Query: 209 KLA--SYKL----QSTLAIR---------------------------------------- 222
KL+ S+++ Q TLAI
Sbjct: 200 KLSARSFQILGNCQFTLAISLHASNQKTRETIIPSAKNYEIKNIIEDSKQFVKDTGRRVS 259
Query: 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL 277
+GVND++EHA EL+ LL G HVNLI +N I+ +++R K + F L
Sbjct: 260 FEYLMLSGVNDKLEHANELSNLLR--GFQCHVNLIQYNQIDEVEFKRASLKNLQLFQSRL 317
Query: 278 ESHKITTSIRQTRGLDASAACGQLR 302
++ IT S R++RGLD +AACGQLR
Sbjct: 318 SNNGITVSFRKSRGLDKNAACGQLR 342
>sp|A2BYK7|RLMN_PROM5 Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus (strain MIT 9515) GN=rlmN
PE=3 SV=1
Length = 348
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 177/326 (54%), Gaps = 61/326 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + SK+ +P +FRN L++ G+ G L + A DGT+KLL+
Sbjct: 25 RGRQIYSWLYNYKNRSKSIDEINVLPLNFRNQLKKEGFIFGELILKEKYLANDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN +E VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L + EI+ Q
Sbjct: 85 NTRDNESVECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKASEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +VTN+VFMGMGEP+LN+ +L + R +N+D + QR IT+STV +PN I+
Sbjct: 140 ILFIENEMNQKVTNIVFMGMGEPLLNIDELLFSIRSINEDFDVSQRRITVSTVAIPNMIR 199
Query: 209 KLASY------KLQSTLAIR--------------SA------------------------ 224
KL+ K Q TLAI SA
Sbjct: 200 KLSEMSFQVLGKCQFTLAISLHASNQKTRETIIPSAKNYHIKYIIDDCREFVKKTGRRVS 259
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGA 276
GVND++EHA EL+ L+ G HVNLI +N IE ++ Q P K A L F
Sbjct: 260 FEYLMLHGVNDKLEHADELSNLIK--GFQCHVNLIQYNQIEEVEFKQTPSKNAQL-FQNR 316
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L ++ I S+R++RG D +AACGQLR
Sbjct: 317 LSNNGINVSLRKSRGSDRNAACGQLR 342
>sp|A5GVE8|RLMN_SYNR3 Probable dual-specificity RNA methyltransferase RlmN
OS=Synechococcus sp. (strain RCC307) GN=rlmN PE=3 SV=1
Length = 346
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 169/330 (51%), Gaps = 62/330 (18%)
Query: 28 PSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLL 87
P RGRQ W GA + +P + R Q+ +GR A DGT+KLL
Sbjct: 25 PFRGRQLHDWLYAKGA-RHWHDITVLPAALR---QQEPLPLGRSNELERHLAQDGTLKLL 80
Query: 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVG 147
+ +D +ETVGIP D RLT CVSSQVGCP+ C FCATGK G R+L HEIV
Sbjct: 81 LATDDGLSLETVGIPTRD-----RLTVCVSSQVGCPMACRFCATGKEGLQRSLEPHEIVD 135
Query: 148 QVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207
QVL + E+ + R ++VVFMGMGEP+LN VL A CL++D+ + R IT+STVGVPNT+
Sbjct: 136 QVLTVREVMQRRPSHVVFMGMGEPLLNSDHVLTAIDCLSRDLGMAMRQITVSTVGVPNTL 195
Query: 208 KKLASYKL------QSTLA----------------------------------------- 220
+LA L Q TLA
Sbjct: 196 PRLAELALERLGRAQFTLAVSLHAPDQALREELIPTARAYPYEQLLEDCRHYVAISGRRV 255
Query: 221 ----IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276
I +ND A LAE + G HVNLIP+NPI ++QRP V AFA A
Sbjct: 256 SFEYILLGNLNDSPRQAQALAEQVR--GFQSHVNLIPYNPIAEEEFQRPEPARVDAFAAA 313
Query: 277 LESHKITTSIRQTRGLDASAACGQLRNEFQ 306
L+ + S+R +RGLD +AACGQLR + Q
Sbjct: 314 LKQRGVAVSVRASRGLDQNAACGQLRRQRQ 343
>sp|Q7V010|RLMN_PROMP Probable dual-specificity RNA methyltransferase RlmN
OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=rlmN PE=3 SV=1
Length = 348
Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 169/326 (51%), Gaps = 61/326 (18%)
Query: 30 RGRQRAPW-HVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88
RGRQ W + SK+ +P FR+ L+ + G L + A DGT+KLL+
Sbjct: 25 RGRQIYNWLYNYKNRSKSIDEINVLPLKFRDQLKNEAFLFGELTLKEKYLATDGTLKLLL 84
Query: 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 148
DN +E VGIP E RLTAC+SSQVGCP+ C FCATGK G R+L EI+ Q
Sbjct: 85 NTRDNESVECVGIPTEK-----RLTACLSSQVGCPMDCKFCATGKEGLKRSLKVSEILDQ 139
Query: 149 VLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIK 208
+L IE +V+N+VFMGMGEP+LN+ +L + R +N+D I QR IT+STV +P I
Sbjct: 140 ILFIENQMNQKVSNIVFMGMGEPLLNIDELLLSIRSINEDFAISQRKITVSTVAIPKMIS 199
Query: 209 KLASY------KLQSTLA---------IRSA----------------------------- 224
KL+ K Q TLA IR A
Sbjct: 200 KLSELSFQVLGKCQFTLAISLHASNQKIREAIIPSAKNYHIKNIIDDCREYVRETGRRVS 259
Query: 225 -------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGA 276
GVND++EHA EL+ L+ G HVNLI +N IE ++ Q P K A L F
Sbjct: 260 FEYLMLHGVNDKLEHADELSNLIK--GFQCHVNLIQYNHIEEVEFKQTPIKNAQL-FQTR 316
Query: 277 LESHKITTSIRQTRGLDASAACGQLR 302
L + I S R++RG D +AACGQLR
Sbjct: 317 LSNSGINVSFRKSRGSDRNAACGQLR 342
>sp|A9A3L9|RLMN_NITMS Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus
maritimus (strain SCM1) GN=rlmN PE=3 SV=1
Length = 351
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 156/306 (50%), Gaps = 56/306 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEK--GP 109
+P+ R + EAG+T+G V + DG T KLL++L D +ETV + E K G
Sbjct: 47 LPKKLREEFTEAGYTIGSAKEIHRVVSDDGDTTKLLLELSDGSSVETVLMQYEPTKIGGH 106
Query: 110 MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFM 166
R T CVS+Q+GC + C FCATG+ GF NL + IV QV+ E+ + R VTN+VFM
Sbjct: 107 PRSTICVSTQIGCAMGCVFCATGQMGFETNLKAEHIVSQVIHFAELLEQRGEHVTNLVFM 166
Query: 167 GMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-- 222
GMGEPM N ++ A + L D +GQR ITIST+G+ + I+KLA LQ LAI
Sbjct: 167 GMGEPMANYDEMIRAVKILTHDRGFGLGQRHITISTIGITSGIEKLAEENLQIGLAISLH 226
Query: 223 -------------------------------------------SAGVNDQVEHAVELAEL 239
GVND E A ELA L
Sbjct: 227 APNNELRKKLVPTAGPNSVEDIIKSGRDYFKKTGRRVTFEYALMEGVNDSPEIAHELARL 286
Query: 240 LHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299
L G G HVN+IP NP G D++RP +K VL F L + ++R +G + SAACG
Sbjct: 287 LR--GNGSHVNIIPINPTAG-DFKRPSEKNVLEFEQILRKSGVNCTVRVEKGTEISAACG 343
Query: 300 QLRNEF 305
QLR +
Sbjct: 344 QLRTDI 349
>sp|A7HNQ1|RLMN_FERNB Probable dual-specificity RNA methyltransferase RlmN
OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
5306 / Rt17-B1) GN=rlmN PE=3 SV=1
Length = 348
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 159/303 (52%), Gaps = 57/303 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+ + RN L E + + ++ D T K L KLED+ IE+V + P R+
Sbjct: 48 LSKEHRNTLSERFYIYVPELLDMQISQIDKTTKFLWKLEDDNTIESVLLF-----HPDRV 102
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172
TAC+S+QVGCP +C+FCATG+ GF RNLS+ EIV Q++A+E+ K + N+V+MGMGEP+
Sbjct: 103 TACISTQVGCPAKCAFCATGQSGFVRNLSAGEIVSQIIAMEKHRKVNIGNIVYMGMGEPL 162
Query: 173 LNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA---------- 220
LN K V+++ + LN K I R I+ISTVG+P I +LA + LA
Sbjct: 163 LNYKEVVKSVKMLNHKKGKNISMRRISISTVGIPEKIVELAQDLPEVKLAISLHAPNNYK 222
Query: 221 ----------------IRSAG-------------------VNDQVEHAVELAELLHEWGR 245
I+SA ND V+ A +LAELL G
Sbjct: 223 RDIIVPMNKKYSVEEIIQSAKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELLK--GM 280
Query: 246 GHHVNLIPFNPIEGS---DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G +VNLIP NP+ S ++RP+ A+ F L+ H I IR+ +G D AACGQLR
Sbjct: 281 GAYVNLIPVNPVPSSGELKFERPHHWAIERFKEVLDKHNIENEIRREKGTDIDAACGQLR 340
Query: 303 NEF 305
+
Sbjct: 341 RRY 343
>sp|B9KEA4|RLMN_CAMLR Dual-specificity RNA methyltransferase RlmN OS=Campylobacter lari
(strain RM2100 / D67 / ATCC BAA-1060) GN=rlmN PE=3 SV=1
Length = 356
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 169/331 (51%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + A + +P+ FR LQ+ + L + + DG++K L +
Sbjct: 24 RAKQIFEWVYKKYADDFLQMS-SLPKDFRVYLQK-NFHFSPLKCVKDEKSKDGSIKYLFE 81
Query: 90 LEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L D + IE V +P++ DE G + R T CVSSQVGC CSFC T KGG SRNLS
Sbjct: 82 LLDGKKIEAVLLPMKEELVDENGKIIKHARYTICVSSQVGCKSGCSFCLTAKGGLSRNLS 141
Query: 142 SHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMI 196
+ EIVGQ+L I++ K R N+V+MGMGEP+ NLK+V +A + L N + I R
Sbjct: 142 AGEIVGQILWIKKHNKIPYERRVNIVYMGMGEPLDNLKNVSKAVKILADNDALAISPRRQ 201
Query: 197 TISTVGVPNTIKKLASYKLQSTLAI---------RSA----------------------- 224
TIST G+ IK+L L LAI RS
Sbjct: 202 TISTSGLAKQIKELGEMNLGVLLAISLHAVNDELRSELMPINKAYNIASIMEAVRNFPID 261
Query: 225 -------------GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
G+ND++EHA EL +LL+ G VNLI FNP EGS Y RP + +
Sbjct: 262 QRKRVMFEYLLIDGINDKIEHAKELVKLLN--GIKAKVNLILFNPHEGSLYNRPSVENAI 319
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L + +T +IR+++GLD SAACGQL+
Sbjct: 320 KFQDYLSAKGVTCTIRESKGLDISAACGQLK 350
>sp|A0RRU0|RLMN_CAMFF Dual-specificity RNA methyltransferase RlmN OS=Campylobacter fetus
subsp. fetus (strain 82-40) GN=rlmN PE=3 SV=1
Length = 354
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 167/331 (50%), Gaps = 62/331 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R +Q W + A ++ + + R +L+ + + + L R+ T+ DG++K L K
Sbjct: 21 RAKQIYEWVYKKNA-RSFDEMTNISKDVRENLK-SEFYLDPLTCVRSETSKDGSIKYLFK 78
Query: 90 LEDNRLIETVGIPVEDE----KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L D + IE+V +P+++E G + R T CVSSQVGC + CSFC T KGGF RNLS
Sbjct: 79 LTDGKTIESVLLPMKEEISSEDGSVERHARYTICVSSQVGCKMGCSFCLTAKGGFVRNLS 138
Query: 142 SHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMI 196
+ EIV Q+L I+ I R NVV+MGMGEP+ NL +V +A L N + IG R
Sbjct: 139 AGEIVAQILWIKRENNIPYERRVNVVYMGMGEPLDNLTNVSKAVSILKDNDGLAIGARRQ 198
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIR---------------------------------- 222
TIST G+ + IKKL L LAI
Sbjct: 199 TISTSGLASQIKKLGELDLGVLLAISLHAVTDELRAKLMPINKAYNIAAVMDAVRAFPID 258
Query: 223 -----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
VND + A L +LLH G VNLI FNP EGS YQRP + V
Sbjct: 259 MRKRVMFEYLIMDKVNDNLSDAKALVKLLH--GIKAKVNLILFNPHEGSQYQRPSIENVD 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLR 302
F L+S +T +IRQ++GLD SAACGQL+
Sbjct: 317 NFRTYLQSRGVTCTIRQSKGLDISAACGQLK 347
>sp|A7ZGB0|RLMN_CAMC1 Dual-specificity RNA methyltransferase RlmN OS=Campylobacter
concisus (strain 13826) GN=rlmN PE=3 SV=1
Length = 381
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 177/354 (50%), Gaps = 63/354 (17%)
Query: 25 FTCPS-RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGT 83
PS R Q W + A++ + +P+ R DL E + + L + ++DG+
Sbjct: 15 LVSPSFRATQIYEWVYKKNATEFSQMLN-LPKDMRQDLAEK-FYLDPLKCVKFEQSSDGS 72
Query: 84 VKLLIKLEDNRLIETVGIP----VEDEKGPM----RLTACVSSQVGCPLRCSFCATGKGG 135
+K L +L+D IE+V +P + DE G + R T CVSSQVGC + C+FC T KGG
Sbjct: 73 IKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTICVSSQVGCKMGCAFCLTAKGG 132
Query: 136 FSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHR--CLNKDVQ 190
RNL++ EIVGQ+L I+ +I R NVV+MGMGEP+ NL +V +A + LN+ +
Sbjct: 133 LVRNLTAGEIVGQILWIKRENKIPYERRINVVYMGMGEPLDNLTNVSKAIKILALNEGLA 192
Query: 191 IGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------ 226
I R T+ST G+ + IKKL L LAI V
Sbjct: 193 ISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPINKAYNIEAVMDAV 252
Query: 227 ---------------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRP 265
ND V A +L +LLH G VNLI FNP EGS++ RP
Sbjct: 253 RGFPIDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLH--GIKAKVNLIYFNPHEGSEFGRP 310
Query: 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKSPLRIDSSNSSS 319
++L F L H +T +IRQ++GLD SAACGQL+ + R + S +S+
Sbjct: 311 ELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQLKQRNENPKFRANVSGNSA 364
>sp|A7I414|RLMN_CAMHC Dual-specificity RNA methyltransferase RlmN OS=Campylobacter
hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
CH001A) GN=rlmN PE=3 SV=1
Length = 358
Score = 174 bits (440), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 160/310 (51%), Gaps = 61/310 (19%)
Query: 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE---- 106
+ +P R DL + +G L + + + DG+ K L +L+D + IE+V +P++DE
Sbjct: 41 KNLPLQMREDLANE-FYIGGLNVSKCEQSVDGSKKYLFELKDGKTIESVLLPMKDEITDE 99
Query: 107 KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HR 159
G + R T CVSSQVGC + C+FC T KGGF RNLS+ EIV Q+ I++I K R
Sbjct: 100 NGEILRHKRYTICVSSQVGCKIGCAFCLTAKGGFVRNLSAGEIVEQIRLIKKINKIPYER 159
Query: 160 VTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQS 217
NVV+MGMGEP+ NL++V +A + L N+ + I R TIST G+ + IKKL L
Sbjct: 160 RINVVYMGMGEPLNNLENVAKAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGEMNLGV 219
Query: 218 TLAIR---------------------------------------------SAGVNDQVEH 232
LAI GVND +
Sbjct: 220 LLAISLHAVNDELREKLMPINRAYNIASIMQAVREFPIDLRKRVMFEYLVMDGVNDSIND 279
Query: 233 AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292
A L LL+ G VNLI FNP GS + RP ++ ++ F L H IT +IRQ++GL
Sbjct: 280 AKTLVRLLN--GIKAKVNLIYFNPHIGSKFHRPSEENMIKFQDYLSVHGITCTIRQSKGL 337
Query: 293 DASAACGQLR 302
D SAACGQLR
Sbjct: 338 DISAACGQLR 347
>sp|Q1J0P9|RLMN_DEIGD Probable dual-specificity RNA methyltransferase RlmN OS=Deinococcus
geothermalis (strain DSM 11300) GN=rlmN PE=3 SV=1
Length = 344
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 153/289 (52%), Gaps = 67/289 (23%)
Query: 70 RLPIFR---TVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRC 126
RL FR TV +ADG+VK L L+D R +E V +P D K T CVS+ VGCP +C
Sbjct: 53 RLNPFREIETVRSADGSVKYLFTLQDGRQMEAVYMPYLDRK-----TICVSTMVGCPAKC 107
Query: 127 SFCATGKGGFSRNLSSHEIVGQVLAI---EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHR 183
+FCATG GF RNL+ EIVGQVLA+ E + + N+VFMGMGEP+LN ++ ++A R
Sbjct: 108 AFCATGAMGFGRNLTPGEIVGQVLAVAGGEGLAPRELRNLVFMGMGEPLLNYENTMQAAR 167
Query: 184 CLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAIRSA----------------- 224
L +G +R +T+STVG+P I++LA+ + L I+ A
Sbjct: 168 ILLHPQALGMSKRRVTLSTVGLPKGIRRLAA---EDDLGIKLAISLHAPDEATRQRIIPT 224
Query: 225 --------------------------------GVNDQVEHAVELAELLHEWGRGHHVNLI 252
G+ND + A ELA+LL G HVNLI
Sbjct: 225 GHRNSIAEIMAAAREYQAVTGRRVTFEYSMLRGINDHLWQAEELADLLR--GLVSHVNLI 282
Query: 253 PFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301
P NP +GS ++ ++ + AF L + + S+R++RG DA AACGQL
Sbjct: 283 PMNPWDGSGFESSTEEQIQAFYDVLAARGVDVSVRRSRGKDAGAACGQL 331
>sp|A6Q115|RLMN_NITSB Dual-specificity RNA methyltransferase RlmN OS=Nitratiruptor sp.
(strain SB155-2) GN=rlmN PE=3 SV=1
Length = 355
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 166/333 (49%), Gaps = 62/333 (18%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
R Q W + GA K +P+S R +L+E +T+ I + DG+ K L+
Sbjct: 21 RANQIYQWIYQKGA-KDFESMSNLPKSMREELKEK-FTITPPKILNVEVSKDGSKKYLLG 78
Query: 90 LEDNRLIETVGIPVE----DEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLS 141
L+D +E+V +P++ DEKG + R T CVSSQVGC + C FC T KGGF RNL+
Sbjct: 79 LQDGHTVESVLLPMKKEERDEKGNILKEARYTVCVSSQVGCKVGCEFCLTAKGGFVRNLT 138
Query: 142 SHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMI 196
EIV QVL I E I +R N+V+MGMGEP+ NL++V +A + + + + I R
Sbjct: 139 PGEIVEQVLTIREDNNIPANRRVNIVYMGMGEPLDNLENVAKAVKIFSDEHGMSISPRRQ 198
Query: 197 TISTVGVPNTIKKLASYKLQSTLAIRSAGV------------------------------ 226
TIST G+ IKKL L LAI V
Sbjct: 199 TISTSGLAPKIKKLGEMNLGVLLAISLHAVDDELRQKLMPINKAYNIESVIQAVKEFPID 258
Query: 227 ---------------NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVL 271
ND ++ A +L +LLH G VNLI FNP GS +QRP K V
Sbjct: 259 QRKRVMFEYLMIKNLNDDLKAAKKLVKLLH--GIKAKVNLIYFNPYPGSPFQRPEPKDVE 316
Query: 272 AFAGALESHKITTSIRQTRGLDASAACGQLRNE 304
AF L H + +IR+++GLD SAACGQL+ +
Sbjct: 317 AFQKYLLDHGVLCTIRESKGLDISAACGQLKEK 349
>sp|B8DRU2|RLMN_DESVM Dual-specificity RNA methyltransferase RlmN OS=Desulfovibrio
vulgaris (strain Miyazaki F / DSM 19637) GN=rlmN PE=3
SV=1
Length = 367
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 150/284 (52%), Gaps = 55/284 (19%)
Query: 72 PIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCA 130
P RTV T++DGTVK L+ L D L+ETV IP E +G +R+T C+S QVGC + C+FC+
Sbjct: 65 PEVRTVKTSSDGTVKFLLALADGALVETVLIPSESREGKVRMTQCLSCQVGCAMGCTFCS 124
Query: 131 TGKGGFSRNLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRC 184
TG GF RN++ EI+GQVL A E + R V N+VFMGMGEP+LNL V+ + R
Sbjct: 125 TGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRT 184
Query: 185 LNKDVQI--GQRMITISTVGVPNTIKKL---------------------------ASYKL 215
LN + + R IT+ST G+ +++L A + L
Sbjct: 185 LNDEFGLCFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQEVRARIMPRAARWTL 244
Query: 216 QSTLA-----------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258
+A + GVND ++HA EL L+ +NLI +NP E
Sbjct: 245 DDLMAALESYPLKTRERITFEYLLLGGVNDSIDHARELVRLVSR--TKAKLNLIVYNPAE 302
Query: 259 GSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
G Y+ P + +LAF L S +T IR+++G D AACGQL+
Sbjct: 303 GLPYEAPSQARILAFEQYLWSKNVTAIIRKSKGQDIKAACGQLK 346
>sp|B8FS78|RLMN_DESHD Probable dual-specificity RNA methyltransferase RlmN
OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=rlmN PE=3 SV=1
Length = 357
Score = 171 bits (434), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 161/326 (49%), Gaps = 51/326 (15%)
Query: 30 RGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89
RGRQ W V+ A + R + R LQE G + L R A DGT K L +
Sbjct: 30 RGRQVFQW-VQQKAVQNWEELRNIGAGDRQKLQE-GLFLQPLRKVREQIAQDGTRKFLFR 87
Query: 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 149
D +E V + + K R T CVS+Q+GC + C+FCATG GG+ RNLS EI+GQV
Sbjct: 88 CADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQV 147
Query: 150 LAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVG 202
L I + + +VTN+VFMGMGEP+LN ++VL+A LN + IG R +TIST G
Sbjct: 148 LDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSG 207
Query: 203 VPNTIKKLASYKLQSTLAIRSAGVN----DQV---EHAVELAELLHEWGR---------- 245
V I++LA Q LA+ + DQ+ L EL+ G
Sbjct: 208 VAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLEELMEACGDYTTLTNRRIT 267
Query: 246 ------------------GH-------HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280
GH HVNLIP NP+ G+ RP K V FA +LES
Sbjct: 268 FEIALISGQATLEAAQAVGHLLKGQLAHVNLIPVNPVAGTGMARPTAKEVQQFAQSLESM 327
Query: 281 KITTSIRQTRGLDASAACGQLRNEFQ 306
I S+R+ +G D AACGQLR + +
Sbjct: 328 GIPVSVREEKGTDIDAACGQLRRQLE 353
>sp|B1LAW7|RLMN_THESQ Probable dual-specificity RNA methyltransferase RlmN OS=Thermotoga
sp. (strain RQ2) GN=rlmN PE=3 SV=1
Length = 343
Score = 171 bits (433), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 147/275 (53%), Gaps = 55/275 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ DGT K L +LED IE+V + P R+TAC+S+QVGCP++C FCATG
Sbjct: 69 KKVSRIDGTTKFLWELEDGNTIESVMLF-----HPDRITACISTQVGCPVKCIFCATGMS 123
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
GF RNL++ EIV Q+L++E K ++ NVV+MGMGEP+LN ++ +++ R LN K IG
Sbjct: 124 GFVRNLTTGEIVAQILSMEREEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIG 183
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLA-------------------------------- 220
R ITISTVG+P+ I +LA L LA
Sbjct: 184 IRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEILNAVKI 243
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK 267
+ G+ND++ A +LAE+L VNLIP NP D ++P +
Sbjct: 244 YQRKTGNRVTIEYVLIRGINDEISDAKKLAEILKNM--KIFVNLIPVNPT-AEDLKKPSR 300
Query: 268 KAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
+ +LAF L + I IR+ +G D AACGQLR
Sbjct: 301 ERLLAFKRILLENGIEAEIRREKGSDIEAACGQLR 335
>sp|A1WXZ3|RLMN_HALHL Dual-specificity RNA methyltransferase RlmN OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1
Length = 359
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 147/278 (52%), Gaps = 55/278 (19%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSR 138
A+DGT K +++L D +E V IP P R T C+SSQ GCP+ C+FCATG+GGFSR
Sbjct: 80 ASDGTRKWVVRLADGNCVEAVYIP-----EPKRGTLCISSQAGCPMGCTFCATGEGGFSR 134
Query: 139 NLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ--IGQRM 195
NL++ EIVGQV +A + + + +TN+VFMGMGEP+LN V+ A R D + +R
Sbjct: 135 NLTAAEIVGQVHVARQHLPEGAITNIVFMGMGEPLLNFDPVISASRVFTDDYGFVLSKRR 194
Query: 196 ITISTVGVPNTIKKLA--------------SYKLQSTLA--------------------- 220
+TIST GV + I+++ + +L++ L
Sbjct: 195 VTISTSGVVHAIERMQRVTDVSLAVSLHAPNNELRNQLVPLNRKNPLERLLPACHAYIAE 254
Query: 221 ----------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAV 270
+ GVNDQ EHA EL + L G VNLIPFNP G+ Y R + V
Sbjct: 255 KPHRRITWEYVMLDGVNDQDEHARELLQRLR--GIPSKVNLIPFNPYPGARYGRTPDRQV 312
Query: 271 LAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308
FA L H +T +IR+TRG D ACGQL E + +
Sbjct: 313 RRFADRLLEHGLTATIRETRGDDIDGACGQLVGEIRDA 350
>sp|B0TGT1|RLMN_HELMI Probable dual-specificity RNA methyltransferase RlmN
OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=rlmN PE=3 SV=1
Length = 385
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 147/302 (48%), Gaps = 55/302 (18%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRL 112
+PQ+ R L EAGW P R A DGT K L +L D LIE+V +P + R+
Sbjct: 78 LPQALRVRLGEAGWLKPLAP-ERHRVARDGTEKYLWRLADGELIESVLMPYRRAQTRDRV 136
Query: 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI-----EEIFKHRVTNVVFMG 167
T C+S+Q GCPL C FCATG+ GF RNL++ EIVGQVL I ++ +VTN+VFMG
Sbjct: 137 TVCLSTQAGCPLSCRFCATGRQGFRRNLTAAEIVGQVLDITHEKRKDDPDFKVTNLVFMG 196
Query: 168 MGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI---- 221
MGEP LN +V A + IGQR IT+ST G+ I + A + LA+
Sbjct: 197 MGEPFLNYDNVRRAIGLFTHPEGQAIGQRRITVSTAGIVPGIDRFADEDWEVNLALSLHA 256
Query: 222 -----RS------------------------------------AGVNDQVEHAVELAELL 240
RS AGVND++E A LA L
Sbjct: 257 ADDKQRSEWMPVNDRFPLAQVLEACRRYWEKTRRRLSVEYALMAGVNDRLEDARRLASLF 316
Query: 241 HEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQ 300
W H+NLIP N + G +RP ++ F L + IR+ RG D AACGQ
Sbjct: 317 KGW--PIHLNLIPVNAVAGIGVRRPEREPTERFLAELRRWGVDAVIREERGQDIEAACGQ 374
Query: 301 LR 302
LR
Sbjct: 375 LR 376
>sp|Q9X240|RLMN_THEMA Probable dual-specificity RNA methyltransferase RlmN OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=rlmN PE=3 SV=1
Length = 343
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 149/276 (53%), Gaps = 57/276 (20%)
Query: 75 RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG 134
+ V+ DGT K L +LED IE+V + P R+TAC+S+QVGCP++C FCATG
Sbjct: 69 KKVSRIDGTTKFLWELEDGNTIESVMLF-----HPDRITACISTQVGCPVKCIFCATGMS 123
Query: 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIG 192
GF RNL++ EIV Q+L++E+ K ++ NVV+MGMGEP+LN ++ +++ R LN K IG
Sbjct: 124 GFVRNLTTGEIVAQILSMEKEEKKKIGNVVYMGMGEPLLNYENTIKSIRILNHKKMGNIG 183
Query: 193 QRMITISTVGVPNTIKKLASYKLQSTLA-------------------------------- 220
R ITISTVG+P+ I +LA L LA
Sbjct: 184 IRRITISTVGIPDRIIQLAEEGLDVKLALSLHAPTNFKRDQLVPLNKKYSIEEILNAVKI 243
Query: 221 -------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP-IEGSDYQRPY 266
+ G+ND++ A +LAE+L VNLIP NP +EG +RP
Sbjct: 244 YQRKTGNRVTIEYVLIRGINDEISDAKKLAEILRNM--KVFVNLIPVNPTVEG--LRRPS 299
Query: 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
++ +L F L + I IR+ +G D AACGQLR
Sbjct: 300 RERLLTFKRILLENGIEAEIRREKGTDIEAACGQLR 335
>sp|A7H662|RLMN_CAMJD Dual-specificity RNA methyltransferase RlmN OS=Campylobacter jejuni
subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97)
GN=rlmN PE=3 SV=1
Length = 356
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 158/308 (51%), Gaps = 61/308 (19%)
Query: 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEK----- 107
+P+ R +L + + + + + DG++K L +L D +E+V +P+++EK
Sbjct: 46 LPKDLRLELAQ-NFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDTEG 104
Query: 108 ---GPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVT 161
R T CVSSQVGC CSFC T KGG RNLS+ EIVGQ+L I++ I R
Sbjct: 105 KRISHARYTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRV 164
Query: 162 NVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTL 219
N+V+MGMGEP+ NLK+V +A + L N + I R TIST G+ IK+L L L
Sbjct: 165 NIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQMNLGVLL 224
Query: 220 AIR---------------------------------------------SAGVNDQVEHAV 234
AI G+ND++EHA
Sbjct: 225 AISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAK 284
Query: 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294
EL +LL+ G VNLI FNP EGS Y+RP + + F L S +T +IR+++GLD
Sbjct: 285 ELVKLLN--GIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDI 342
Query: 295 SAACGQLR 302
SAACGQL+
Sbjct: 343 SAACGQLK 350
>sp|A8FP27|RLMN_CAMJ8 Dual-specificity RNA methyltransferase RlmN OS=Campylobacter jejuni
subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
GN=rlmN PE=3 SV=1
Length = 356
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 148/282 (52%), Gaps = 60/282 (21%)
Query: 79 AADGTVKLLIKLEDNRLIETVGIPVEDEK--------GPMRLTACVSSQVGCPLRCSFCA 130
+ DG++K L +L D +E+V +P+++EK R T CVSSQVGC CSFC
Sbjct: 71 SKDGSIKYLFELVDGLRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCL 130
Query: 131 TGKGGFSRNLSSHEIVGQVLAIEE---IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL-- 185
T KGG RNLS+ EIVGQ+L I++ I R N+V+MGMGEP+ NLK+V +A + L
Sbjct: 131 TAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQ 190
Query: 186 NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------------------- 222
N + I R TIST G+ IK+L L LAI
Sbjct: 191 NDGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDGLRTELMPINKAYNIAA 250
Query: 223 ----------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260
G+ND++EHA EL +LL+ G VNLI FNP EGS
Sbjct: 251 IMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLN--GIKAKVNLILFNPHEGS 308
Query: 261 DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302
Y+RP + + F L S +T +IR+++GLD SAACGQL+
Sbjct: 309 LYKRPSLENAIKFQDLLSSKGVTCTIRESKGLDISAACGQLK 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,721,434
Number of Sequences: 539616
Number of extensions: 4499157
Number of successful extensions: 14035
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11087
Number of HSP's gapped (non-prelim): 1366
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)