Query 043340
Match_columns 327
No_of_seqs 302 out of 2435
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 1.1E-87 2.4E-92 647.1 31.5 292 6-304 7-364 (371)
2 PRK14465 ribosomal RNA large s 100.0 2.4E-82 5.3E-87 609.5 32.5 291 6-304 4-341 (342)
3 PRK14459 ribosomal RNA large s 100.0 2.5E-82 5.5E-87 614.6 31.9 290 8-304 23-371 (373)
4 COG0820 Predicted Fe-S-cluster 100.0 7.1E-82 1.5E-86 599.7 29.1 293 7-308 2-346 (349)
5 PRK14457 ribosomal RNA large s 100.0 2.3E-81 5.1E-86 604.9 32.9 291 6-305 1-343 (345)
6 PRK14467 ribosomal RNA large s 100.0 1.4E-80 3E-85 599.8 31.9 292 7-306 2-343 (348)
7 PRK14466 ribosomal RNA large s 100.0 2.3E-80 5E-85 595.0 30.6 289 6-306 4-339 (345)
8 PRK14454 ribosomal RNA large s 100.0 5.1E-80 1.1E-84 595.5 32.3 291 7-306 2-340 (342)
9 PRK14462 ribosomal RNA large s 100.0 2.6E-79 5.6E-84 591.3 32.1 292 7-306 3-352 (356)
10 TIGR00048 radical SAM enzyme, 100.0 6.9E-79 1.5E-83 590.6 32.6 292 6-306 6-347 (355)
11 PRK11194 ribosomal RNA large s 100.0 6.7E-79 1.5E-83 591.9 32.4 290 6-306 5-351 (372)
12 PRK14460 ribosomal RNA large s 100.0 1.1E-77 2.4E-82 581.7 33.0 292 7-307 2-347 (354)
13 PRK14455 ribosomal RNA large s 100.0 1.8E-77 3.8E-82 581.0 33.3 293 6-307 10-352 (356)
14 PRK14456 ribosomal RNA large s 100.0 3.3E-77 7.1E-82 580.1 32.9 290 6-304 17-365 (368)
15 PRK14470 ribosomal RNA large s 100.0 2.8E-77 6.1E-82 574.6 31.2 284 10-303 2-333 (336)
16 PRK14464 ribosomal RNA large s 100.0 3.2E-77 6.9E-82 573.6 29.7 284 12-308 1-333 (344)
17 PRK14453 chloramphenicol/florf 100.0 1.1E-76 2.4E-81 572.8 31.9 287 11-306 4-344 (347)
18 PRK14469 ribosomal RNA large s 100.0 4.3E-76 9.3E-81 569.7 32.6 290 7-306 2-339 (343)
19 PRK14463 ribosomal RNA large s 100.0 4E-76 8.7E-81 569.9 32.0 292 6-309 4-342 (349)
20 PRK14468 ribosomal RNA large s 100.0 6E-75 1.3E-79 560.7 31.2 282 7-304 2-333 (343)
21 PRK11145 pflA pyruvate formate 99.9 3.6E-25 7.8E-30 204.5 18.7 177 96-285 10-245 (246)
22 TIGR01290 nifB nitrogenase cof 99.9 2.8E-21 6E-26 192.9 18.5 160 111-280 25-258 (442)
23 TIGR02493 PFLA pyruvate format 99.9 1.2E-20 2.7E-25 172.7 20.2 174 94-280 3-235 (235)
24 COG1180 PflA Pyruvate-formate 99.9 6.8E-21 1.5E-25 178.1 16.1 163 116-283 39-243 (260)
25 TIGR03821 AblA_like_1 lysine-2 99.8 1.9E-19 4E-24 173.1 18.5 203 77-291 68-314 (321)
26 TIGR02494 PFLE_PFLC glycyl-rad 99.8 2.2E-19 4.7E-24 170.1 12.9 136 139-281 105-295 (295)
27 PRK00164 moaA molybdenum cofac 99.8 1.6E-18 3.5E-23 166.8 17.5 169 106-286 11-228 (331)
28 PRK10076 pyruvate formate lyas 99.8 1.6E-18 3.5E-23 157.6 15.3 144 137-286 16-211 (213)
29 PRK13762 tRNA-modifying enzyme 99.7 1.3E-16 2.8E-21 153.5 17.3 211 49-280 3-290 (322)
30 PLN02951 Molybderin biosynthes 99.7 3.6E-16 7.8E-21 153.3 18.3 155 93-262 42-244 (373)
31 COG2896 MoaA Molybdenum cofact 99.7 1.4E-15 3.1E-20 144.9 16.2 140 107-259 6-193 (322)
32 TIGR02495 NrdG2 anaerobic ribo 99.7 8.4E-15 1.8E-19 130.0 19.2 152 113-281 17-183 (191)
33 TIGR02668 moaA_archaeal probab 99.6 7.4E-15 1.6E-19 139.6 18.1 140 107-259 5-190 (302)
34 PRK13361 molybdenum cofactor b 99.6 1.3E-14 2.7E-19 140.0 17.6 142 106-259 8-196 (329)
35 TIGR03278 methan_mark_10 putat 99.6 1E-13 2.2E-18 137.0 19.0 158 120-285 7-248 (404)
36 TIGR02666 moaA molybdenum cofa 99.6 3E-13 6.4E-18 130.5 21.0 112 107-226 5-123 (334)
37 COG0731 Fe-S oxidoreductases [ 99.5 3.4E-13 7.4E-18 127.2 14.6 156 121-283 33-247 (296)
38 TIGR03365 Bsubt_queE 7-cyano-7 99.5 4.2E-13 9E-18 124.1 13.1 103 111-227 22-130 (238)
39 PRK05301 pyrroloquinoline quin 99.5 2.8E-12 6E-17 125.8 19.6 153 112-283 16-184 (378)
40 TIGR02491 NrdG anaerobic ribon 99.5 1.6E-13 3.6E-18 118.7 9.6 94 96-204 5-106 (154)
41 TIGR03470 HpnH hopanoid biosyn 99.5 2.1E-12 4.6E-17 124.1 18.2 151 112-283 28-193 (318)
42 TIGR03822 AblA_like_2 lysine-2 99.5 4.9E-12 1.1E-16 121.8 20.3 172 114-291 90-308 (321)
43 TIGR02109 PQQ_syn_pqqE coenzym 99.5 3.1E-12 6.7E-17 124.4 18.1 153 112-283 7-175 (358)
44 TIGR00238 KamA family protein. 99.4 4.7E-12 1E-16 122.4 18.3 173 113-291 114-331 (331)
45 COG2100 Predicted Fe-S oxidore 99.4 2.9E-12 6.3E-17 120.8 14.0 128 111-244 106-284 (414)
46 COG1313 PflX Uncharacterized F 99.4 2.8E-12 6.2E-17 119.4 13.0 182 88-284 96-331 (335)
47 smart00729 Elp3 Elongator prot 99.4 4.1E-12 8.9E-17 111.6 13.5 162 113-283 2-182 (216)
48 COG0602 NrdG Organic radical a 99.3 5.3E-12 1.1E-16 114.9 10.1 85 110-205 21-111 (212)
49 PF13394 Fer4_14: 4Fe-4S singl 99.3 3.3E-12 7.2E-17 104.8 6.8 83 119-205 5-92 (119)
50 TIGR02826 RNR_activ_nrdG3 anae 99.3 1.2E-11 2.6E-16 106.4 10.2 84 118-212 21-108 (147)
51 PF13353 Fer4_12: 4Fe-4S singl 99.3 7.7E-12 1.7E-16 105.0 8.9 88 106-204 3-95 (139)
52 PRK11121 nrdG anaerobic ribonu 99.3 1.8E-11 3.8E-16 106.1 10.2 90 105-204 13-108 (154)
53 PRK13745 anaerobic sulfatase-m 99.3 1.4E-10 3E-15 115.3 17.3 158 112-284 13-197 (412)
54 TIGR03820 lys_2_3_AblA lysine- 99.2 6.9E-10 1.5E-14 109.9 19.9 165 114-290 110-325 (417)
55 PRK13758 anaerobic sulfatase-m 99.2 2.5E-10 5.4E-15 111.4 16.5 102 119-226 12-126 (370)
56 COG0535 Predicted Fe-S oxidore 99.2 4.9E-10 1.1E-14 107.1 17.9 138 111-259 18-200 (347)
57 PRK07094 biotin synthase; Prov 99.2 9.4E-10 2E-14 105.6 18.3 155 116-279 43-245 (323)
58 PF04055 Radical_SAM: Radical 99.2 6.7E-10 1.5E-14 93.6 14.9 104 117-228 2-113 (166)
59 cd01335 Radical_SAM Radical SA 99.2 1.1E-09 2.3E-14 94.8 16.2 148 118-281 3-168 (204)
60 COG5014 Predicted Fe-S oxidore 99.1 2.1E-10 4.5E-15 99.8 9.2 107 119-237 48-164 (228)
61 COG0641 AslB Arylsulfatase reg 99.0 5.5E-09 1.2E-13 102.7 15.6 101 122-226 18-124 (378)
62 TIGR00433 bioB biotin syntheta 99.0 5.8E-08 1.2E-12 91.9 19.3 150 119-279 36-237 (296)
63 PRK08508 biotin synthase; Prov 99.0 5.8E-08 1.3E-12 91.8 19.1 167 119-293 14-229 (279)
64 COG0621 MiaB 2-methylthioadeni 99.0 2.5E-08 5.4E-13 99.4 17.1 143 111-261 143-341 (437)
65 PRK06256 biotin synthase; Vali 99.0 7.3E-08 1.6E-12 93.1 19.8 165 119-292 65-279 (336)
66 PRK05481 lipoyl synthase; Prov 99.0 8E-08 1.7E-12 91.4 19.5 174 111-293 52-280 (289)
67 PRK09240 thiH thiamine biosynt 98.9 5.9E-08 1.3E-12 95.4 18.0 160 118-287 80-299 (371)
68 TIGR01125 MiaB-like tRNA modif 98.9 7.3E-08 1.6E-12 96.3 18.6 144 112-261 135-331 (430)
69 PRK14862 rimO ribosomal protei 98.9 8.2E-08 1.8E-12 96.4 17.3 141 111-261 138-342 (440)
70 COG1509 KamA Lysine 2,3-aminom 98.9 1.2E-07 2.5E-12 91.4 17.1 165 118-293 117-332 (369)
71 PRK14338 (dimethylallyl)adenos 98.9 1.4E-07 3E-12 95.2 18.5 145 111-261 154-351 (459)
72 TIGR03551 F420_cofH 7,8-dideme 98.8 1.7E-07 3.6E-12 91.1 16.6 122 116-244 43-221 (343)
73 TIGR00510 lipA lipoate synthas 98.8 7.4E-07 1.6E-11 85.3 19.7 173 111-291 62-289 (302)
74 TIGR01579 MiaB-like-C MiaB-lik 98.8 5.4E-07 1.2E-11 89.6 19.3 145 111-261 137-334 (414)
75 PRK12928 lipoyl synthase; Prov 98.8 1.1E-06 2.4E-11 83.7 20.0 165 111-284 59-274 (290)
76 PRK06245 cofG FO synthase subu 98.8 2.4E-07 5.3E-12 89.6 15.8 158 115-279 15-237 (336)
77 PRK14326 (dimethylallyl)adenos 98.7 8.2E-07 1.8E-11 90.6 19.3 145 111-261 156-353 (502)
78 PRK14331 (dimethylallyl)adenos 98.7 8.2E-07 1.8E-11 89.1 18.5 142 111-261 145-341 (437)
79 PRK14332 (dimethylallyl)adenos 98.7 7.2E-07 1.6E-11 89.8 17.7 143 112-261 154-347 (449)
80 PRK14334 (dimethylallyl)adenos 98.7 1.4E-06 3E-11 87.5 19.4 141 111-261 137-333 (440)
81 PLN02389 biotin synthase 98.7 1.7E-06 3.7E-11 85.3 19.5 151 119-278 90-293 (379)
82 TIGR00089 RNA modification enz 98.7 8.8E-07 1.9E-11 88.5 17.6 145 111-261 138-335 (429)
83 PRK14327 (dimethylallyl)adenos 98.7 1.5E-06 3.2E-11 88.8 19.1 142 111-261 211-408 (509)
84 PRK14336 (dimethylallyl)adenos 98.7 1.4E-06 3.1E-11 86.9 18.7 142 111-261 123-320 (418)
85 PRK14340 (dimethylallyl)adenos 98.7 1.4E-06 3E-11 87.7 18.1 141 111-261 148-344 (445)
86 PRK14330 (dimethylallyl)adenos 98.6 1.9E-06 4.1E-11 86.3 18.3 145 111-261 139-336 (434)
87 TIGR03699 mena_SCO4550 menaqui 98.6 1.4E-06 3E-11 84.5 16.7 154 118-278 47-263 (340)
88 TIGR01574 miaB-methiolase tRNA 98.6 2.1E-06 4.6E-11 86.1 18.5 142 111-261 144-343 (438)
89 TIGR02351 thiH thiazole biosyn 98.6 1.5E-06 3.3E-11 85.3 16.5 161 118-288 79-299 (366)
90 PRK14339 (dimethylallyl)adenos 98.6 3.2E-06 6.9E-11 84.5 18.7 144 111-261 126-326 (420)
91 PRK15108 biotin synthase; Prov 98.6 4.8E-06 1E-10 81.2 19.5 166 119-292 50-265 (345)
92 TIGR00423 radical SAM domain p 98.6 3E-06 6.5E-11 81.2 17.3 123 115-244 8-187 (309)
93 TIGR01578 MiaB-like-B MiaB-lik 98.6 2.4E-06 5.2E-11 85.3 17.2 143 111-261 132-329 (420)
94 PRK14328 (dimethylallyl)adenos 98.6 3.1E-06 6.7E-11 85.0 17.4 144 111-261 146-343 (439)
95 TIGR03550 F420_cofG 7,8-dideme 98.6 2.4E-06 5.1E-11 82.5 15.9 157 114-277 6-231 (322)
96 PRK14337 (dimethylallyl)adenos 98.5 5E-06 1.1E-10 83.7 18.6 145 111-261 147-345 (446)
97 PRK06267 hypothetical protein; 98.5 4.2E-06 9.2E-11 81.7 17.2 150 119-279 34-232 (350)
98 TIGR02026 BchE magnesium-proto 98.5 4.9E-06 1.1E-10 84.8 18.1 70 115-187 196-266 (497)
99 TIGR03471 HpnJ hopanoid biosyn 98.5 5.2E-06 1.1E-10 84.0 18.1 97 113-215 197-298 (472)
100 TIGR00538 hemN oxygen-independ 98.5 8.5E-06 1.9E-10 82.1 19.6 165 113-283 51-281 (455)
101 KOG2876 Molybdenum cofactor bi 98.5 4.6E-08 1E-12 90.4 2.8 145 111-266 10-201 (323)
102 PRK05660 HemN family oxidoredu 98.5 8.5E-06 1.8E-10 80.3 19.0 165 113-283 8-234 (378)
103 PRK14333 (dimethylallyl)adenos 98.5 6.1E-06 1.3E-10 83.1 18.2 144 112-261 148-351 (448)
104 TIGR00539 hemN_rel putative ox 98.5 8.6E-06 1.9E-10 79.6 18.6 159 120-284 8-228 (360)
105 PRK14325 (dimethylallyl)adenos 98.5 6.8E-06 1.5E-10 82.6 18.3 142 111-261 146-345 (444)
106 PRK14329 (dimethylallyl)adenos 98.5 7.1E-06 1.5E-10 83.1 18.2 144 111-261 167-369 (467)
107 PRK14335 (dimethylallyl)adenos 98.5 1E-05 2.2E-10 81.7 19.3 144 111-261 151-354 (455)
108 PRK08446 coproporphyrinogen II 98.5 5.7E-06 1.2E-10 80.7 16.8 158 120-283 8-222 (350)
109 COG2108 Uncharacterized conser 98.5 1.5E-06 3.2E-11 82.7 11.6 136 111-256 29-205 (353)
110 PRK09249 coproporphyrinogen II 98.5 1.4E-05 3E-10 80.6 19.3 161 113-283 51-233 (453)
111 PRK13347 coproporphyrinogen II 98.5 1.3E-05 2.9E-10 80.8 18.7 162 112-283 51-234 (453)
112 PRK08599 coproporphyrinogen II 98.4 9.8E-06 2.1E-10 79.6 17.1 165 113-283 3-231 (377)
113 PRK05799 coproporphyrinogen II 98.4 1E-05 2.2E-10 79.4 16.3 164 113-283 5-230 (374)
114 PLN02428 lipoic acid synthase 98.4 3.8E-05 8.2E-10 74.9 19.2 173 112-293 103-331 (349)
115 COG0502 BioB Biotin synthase a 98.4 3.1E-05 6.7E-10 74.8 17.8 167 120-295 59-275 (335)
116 PRK05628 coproporphyrinogen II 98.3 4.2E-05 9.2E-10 75.1 18.4 165 113-283 4-239 (375)
117 TIGR01212 radical SAM protein, 98.3 4.3E-05 9.4E-10 73.1 17.0 159 125-286 39-257 (302)
118 PRK08207 coproporphyrinogen II 98.3 0.00011 2.3E-09 75.0 20.4 168 111-284 163-399 (488)
119 PRK07360 FO synthase subunit 2 98.3 3.5E-05 7.6E-10 75.8 16.2 120 118-244 66-243 (371)
120 TIGR03700 mena_SCO4494 putativ 98.3 5.1E-05 1.1E-09 74.1 17.0 93 116-215 52-161 (351)
121 PRK08208 coproporphyrinogen II 98.2 0.0001 2.2E-09 73.9 19.4 168 112-283 40-266 (430)
122 PRK00955 hypothetical protein; 98.2 4E-05 8.7E-10 79.6 15.5 143 111-260 291-522 (620)
123 PRK08445 hypothetical protein; 98.2 5.1E-05 1.1E-09 74.1 15.1 121 117-244 47-224 (348)
124 PRK08444 hypothetical protein; 98.1 0.00011 2.5E-09 71.8 16.9 94 116-215 53-162 (353)
125 COG1964 Predicted Fe-S oxidore 98.1 5.6E-05 1.2E-09 74.8 14.4 192 80-301 33-311 (475)
126 PRK05927 hypothetical protein; 98.1 7.1E-05 1.5E-09 73.2 14.2 90 119-215 52-158 (350)
127 TIGR01210 conserved hypothetic 98.0 0.001 2.3E-08 64.0 21.0 163 116-285 19-250 (313)
128 PRK08898 coproporphyrinogen II 97.9 0.00074 1.6E-08 67.0 18.2 166 113-283 21-248 (394)
129 PRK06582 coproporphyrinogen II 97.9 0.0006 1.3E-08 67.6 17.5 165 112-283 12-241 (390)
130 PRK09057 coproporphyrinogen II 97.9 0.00083 1.8E-08 66.3 18.1 165 113-283 6-234 (380)
131 PRK07379 coproporphyrinogen II 97.9 0.00096 2.1E-08 66.3 18.3 166 112-283 11-246 (400)
132 PRK08629 coproporphyrinogen II 97.8 0.00087 1.9E-08 67.4 16.1 158 112-278 53-266 (433)
133 PRK09234 fbiC FO synthase; Rev 97.8 0.0014 3E-08 70.9 18.3 128 110-244 520-708 (843)
134 PRK09613 thiH thiamine biosynt 97.7 0.0029 6.4E-08 64.2 18.6 165 119-289 91-320 (469)
135 PRK06294 coproporphyrinogen II 97.7 0.0017 3.7E-08 63.9 16.5 162 112-283 7-234 (370)
136 PRK05904 coproporphyrinogen II 97.7 0.0034 7.4E-08 61.4 18.0 167 111-284 6-230 (353)
137 PRK05926 hypothetical protein; 97.6 0.0013 2.8E-08 64.8 14.6 119 118-244 74-249 (370)
138 PRK09234 fbiC FO synthase; Rev 97.6 0.0022 4.7E-08 69.4 17.5 154 118-278 77-301 (843)
139 PRK09058 coproporphyrinogen II 97.6 0.0038 8.2E-08 63.1 17.6 159 122-284 71-296 (449)
140 PRK01254 hypothetical protein; 97.6 0.0038 8.2E-08 65.4 17.0 163 112-283 372-588 (707)
141 PTZ00413 lipoate synthase; Pro 97.5 0.018 4E-07 56.7 19.7 165 118-293 155-379 (398)
142 COG1533 SplB DNA repair photol 97.3 0.011 2.4E-07 56.6 16.2 158 116-284 33-215 (297)
143 COG1060 ThiH Thiamine biosynth 97.3 0.0054 1.2E-07 60.4 13.5 65 119-187 66-134 (370)
144 COG1032 Fe-S oxidoreductase [E 97.1 0.0071 1.5E-07 60.3 13.2 44 112-155 198-241 (490)
145 COG0635 HemN Coproporphyrinoge 96.4 0.07 1.5E-06 53.5 13.9 114 112-228 35-160 (416)
146 COG1625 Fe-S oxidoreductase, r 96.1 0.056 1.2E-06 53.6 11.1 122 160-285 79-254 (414)
147 TIGR01211 ELP3 histone acetylt 95.9 0.98 2.1E-05 46.7 19.3 64 120-185 76-161 (522)
148 COG1856 Uncharacterized homolo 95.7 0.21 4.5E-06 46.0 11.9 89 119-215 18-111 (275)
149 TIGR03279 cyano_FeS_chp putati 95.7 0.81 1.8E-05 46.0 17.1 108 119-243 81-206 (433)
150 KOG2492 CDK5 activator-binding 95.3 0.087 1.9E-06 52.2 8.6 137 111-255 219-361 (552)
151 COG1031 Uncharacterized Fe-S o 95.2 1.3 2.8E-05 44.8 16.5 184 110-295 180-412 (560)
152 cd03174 DRE_TIM_metallolyase D 94.8 1.8 3.9E-05 39.8 15.7 141 135-291 11-170 (265)
153 COG0320 LipA Lipoate synthase 92.7 9.1 0.0002 36.4 16.1 157 118-283 76-282 (306)
154 COG1243 ELP3 Histone acetyltra 92.6 6.5 0.00014 39.9 15.8 78 196-280 187-277 (515)
155 KOG2672 Lipoate synthase [Coen 89.8 19 0.00042 34.4 15.4 74 111-187 109-186 (360)
156 COG4277 Predicted DNA-binding 88.6 6.3 0.00014 38.0 11.1 66 119-186 61-130 (404)
157 KOG2900 Biotin synthase [Coenz 86.4 3.2 7E-05 39.0 7.7 86 119-215 91-190 (380)
158 KOG4355 Predicted Fe-S oxidore 82.8 22 0.00047 35.5 11.9 41 113-153 188-229 (547)
159 TIGR02666 moaA molybdenum cofa 80.5 34 0.00075 32.8 12.6 50 207-260 145-196 (334)
160 cd00739 DHPS DHPS subgroup of 75.5 71 0.0015 29.9 15.5 129 138-283 19-165 (257)
161 cd00953 KDG_aldolase KDG (2-ke 72.9 84 0.0018 29.5 14.0 47 138-187 15-63 (279)
162 COG2516 Biotin synthase-relate 70.5 48 0.001 32.3 10.3 67 226-295 197-272 (339)
163 PF06180 CbiK: Cobalt chelatas 67.8 1.1E+02 0.0024 28.8 12.7 120 157-287 99-239 (262)
164 PF14824 Sirohm_synth_M: Siroh 67.7 6.2 0.00013 24.8 2.5 18 195-212 6-23 (30)
165 cd06813 PLPDE_III_DSD_D-TA_lik 66.2 81 0.0018 31.1 11.5 80 159-244 77-171 (388)
166 PF05853 DUF849: Prokaryotic p 64.9 50 0.0011 31.2 9.3 134 139-279 22-196 (272)
167 PRK03620 5-dehydro-4-deoxygluc 63.0 1.4E+02 0.0031 28.4 12.7 47 138-187 23-71 (303)
168 cd01967 Nitrogenase_MoFe_alpha 62.3 59 0.0013 32.0 9.7 106 176-293 73-198 (406)
169 cd01971 Nitrogenase_VnfN_like 61.0 1.6E+02 0.0036 29.4 12.7 109 176-291 72-196 (427)
170 cd01974 Nitrogenase_MoFe_beta 60.9 1.1E+02 0.0024 30.6 11.6 100 176-286 71-192 (435)
171 TIGR01496 DHPS dihydropteroate 60.2 1.5E+02 0.0032 27.7 14.6 128 138-283 18-163 (257)
172 PRK04147 N-acetylneuraminate l 59.9 1.6E+02 0.0034 27.8 12.3 48 138-187 19-68 (293)
173 PLN02417 dihydrodipicolinate s 58.7 1.6E+02 0.0035 27.6 12.4 47 138-187 17-65 (280)
174 cd01972 Nitrogenase_VnfE_like 58.4 1.2E+02 0.0026 30.2 11.3 112 176-294 75-205 (426)
175 TIGR01286 nifK nitrogenase mol 56.8 1.6E+02 0.0036 30.4 12.1 100 176-286 128-252 (515)
176 COG1244 Predicted Fe-S oxidore 56.5 2.1E+02 0.0045 28.2 15.1 111 115-228 50-176 (358)
177 cd00423 Pterin_binding Pterin 56.0 1.7E+02 0.0037 27.1 16.0 130 138-284 19-166 (258)
178 PF00248 Aldo_ket_red: Aldo/ke 55.1 1.2E+02 0.0027 27.7 10.1 139 135-283 74-231 (283)
179 cd00952 CHBPH_aldolase Trans-o 54.5 2E+02 0.0044 27.4 11.8 46 139-187 25-72 (309)
180 TIGR03249 KdgD 5-dehydro-4-deo 54.3 2E+02 0.0042 27.2 12.5 46 139-187 22-69 (296)
181 COG0685 MetF 5,10-methylenetet 54.3 1.2E+02 0.0027 28.8 10.0 30 138-171 87-116 (291)
182 COG0329 DapA Dihydrodipicolina 53.0 2.1E+02 0.0046 27.3 14.4 46 140-188 22-69 (299)
183 COG0296 GlgB 1,4-alpha-glucan 52.4 45 0.00097 35.4 7.2 74 229-304 163-252 (628)
184 TIGR00674 dapA dihydrodipicoli 52.2 2E+02 0.0044 26.9 12.6 46 139-187 15-62 (285)
185 TIGR00612 ispG_gcpE 1-hydroxy- 51.7 2.5E+02 0.0054 27.7 15.2 152 140-299 144-315 (346)
186 cd00951 KDGDH 5-dehydro-4-deox 51.5 2.1E+02 0.0046 26.9 12.2 46 139-187 17-64 (289)
187 cd03466 Nitrogenase_NifN_2 Nit 50.6 1.9E+02 0.0041 29.0 11.2 100 176-286 70-186 (429)
188 COG0816 Predicted endonuclease 50.4 73 0.0016 27.3 7.0 62 231-295 40-102 (141)
189 COG3589 Uncharacterized conser 49.3 90 0.002 30.7 8.1 114 162-285 31-174 (360)
190 PRK07535 methyltetrahydrofolat 48.7 2.3E+02 0.005 26.5 13.1 128 139-283 21-153 (261)
191 cd01965 Nitrogenase_MoFe_beta_ 48.2 2.9E+02 0.0063 27.5 12.2 108 162-287 60-188 (428)
192 PF11823 DUF3343: Protein of u 48.0 32 0.00069 25.5 4.0 35 266-301 10-44 (73)
193 TIGR00683 nanA N-acetylneurami 47.4 2.5E+02 0.0054 26.5 12.5 46 139-187 17-65 (290)
194 TIGR01278 DPOR_BchB light-inde 46.6 3E+02 0.0065 28.3 12.2 109 176-292 71-199 (511)
195 PRK14478 nitrogenase molybdenu 45.7 1.8E+02 0.0038 29.7 10.2 109 161-288 97-224 (475)
196 TIGR01285 nifN nitrogenase mol 44.9 2.1E+02 0.0045 28.8 10.5 107 162-286 70-199 (432)
197 cd06818 PLPDE_III_cryptic_DSD 44.5 3.2E+02 0.0068 26.8 11.9 114 159-282 70-202 (382)
198 TIGR00109 hemH ferrochelatase. 44.2 1.2E+02 0.0027 29.2 8.4 68 170-242 241-319 (322)
199 COG1035 FrhB Coenzyme F420-red 44.0 40 0.00086 33.0 4.9 84 13-104 129-231 (332)
200 PF00762 Ferrochelatase: Ferro 43.3 1E+02 0.0022 29.8 7.6 94 143-242 207-314 (316)
201 TIGR01140 L_thr_O3P_dcar L-thr 42.8 3E+02 0.0065 26.0 11.1 26 264-289 141-166 (330)
202 cd01982 Chlide_reductase_Z Chl 42.4 2.7E+02 0.0059 28.0 10.7 43 247-294 156-198 (412)
203 PRK00035 hemH ferrochelatase; 42.2 3.2E+02 0.0069 26.2 12.1 110 161-280 190-322 (333)
204 cd01976 Nitrogenase_MoFe_alpha 41.8 2.3E+02 0.005 28.3 10.2 107 176-293 84-210 (421)
205 COG0276 HemH Protoheme ferro-l 41.5 1.5E+02 0.0033 28.8 8.5 70 169-242 237-316 (320)
206 TIGR01283 nifE nitrogenase mol 40.9 2.1E+02 0.0046 28.9 9.9 112 162-292 100-234 (456)
207 PRK15063 isocitrate lyase; Pro 40.7 63 0.0014 32.7 5.9 55 229-286 289-344 (428)
208 TIGR02932 vnfK_nitrog V-contai 40.3 3.7E+02 0.008 27.3 11.5 102 176-287 75-198 (457)
209 PRK01254 hypothetical protein; 40.1 3.6E+02 0.0078 29.2 11.5 21 222-244 566-586 (707)
210 TIGR01282 nifD nitrogenase mol 40.0 2.4E+02 0.0051 28.8 10.1 112 161-290 109-242 (466)
211 PRK00366 ispG 4-hydroxy-3-meth 38.9 4E+02 0.0087 26.4 11.2 100 139-244 152-260 (360)
212 cd01968 Nitrogenase_NifE_I Nit 38.2 2.3E+02 0.0051 28.0 9.6 112 161-291 64-194 (410)
213 TIGR00250 RNAse_H_YqgF RNAse H 38.1 1.1E+02 0.0023 25.6 6.1 63 231-296 35-98 (130)
214 TIGR01862 N2-ase-Ialpha nitrog 37.0 4E+02 0.0087 26.8 11.1 106 176-291 103-227 (443)
215 PF07002 Copine: Copine; Inte 36.9 1E+02 0.0022 26.3 5.9 64 128-204 52-120 (146)
216 cd00740 MeTr MeTr subgroup of 36.9 3.5E+02 0.0076 25.1 14.3 106 139-257 22-130 (252)
217 cd00950 DHDPS Dihydrodipicolin 36.6 3.5E+02 0.0076 25.1 12.6 46 139-187 17-64 (284)
218 PHA01083 hypothetical protein 35.7 33 0.00073 29.6 2.6 41 4-44 50-90 (149)
219 PF03652 UPF0081: Uncharacteri 34.5 1.6E+02 0.0035 24.6 6.7 65 230-297 37-103 (135)
220 PRK00109 Holliday junction res 34.3 1.3E+02 0.0027 25.4 6.0 63 231-296 41-104 (138)
221 PF00070 Pyr_redox: Pyridine n 33.9 1.9E+02 0.0041 21.2 6.4 48 233-285 11-58 (80)
222 cd01977 Nitrogenase_VFe_alpha 33.9 4.8E+02 0.01 25.9 11.2 102 176-287 73-194 (415)
223 TIGR03581 EF_0839 conserved hy 33.9 3.9E+02 0.0084 24.8 10.9 67 223-302 157-223 (236)
224 cd01966 Nitrogenase_NifN_1 Nit 33.7 4.7E+02 0.01 26.1 10.9 103 145-253 69-191 (417)
225 cd07939 DRE_TIM_NifV Streptomy 33.7 2.6E+02 0.0057 25.7 8.6 71 139-212 102-175 (259)
226 cd07940 DRE_TIM_IPMS 2-isoprop 33.3 2.4E+02 0.0051 26.2 8.3 88 139-229 106-200 (268)
227 COG2984 ABC-type uncharacteriz 33.2 4.7E+02 0.01 25.5 14.5 69 223-297 136-205 (322)
228 COG1533 SplB DNA repair photol 33.0 65 0.0014 30.9 4.5 36 206-243 174-211 (297)
229 TIGR03470 HpnH hopanoid biosyn 32.6 2.5E+02 0.0055 26.8 8.6 50 206-258 154-204 (318)
230 TIGR00705 SppA_67K signal pept 32.5 4.8E+02 0.01 27.5 11.1 130 138-278 74-214 (584)
231 TIGR02931 anfK_nitrog Fe-only 32.3 4.2E+02 0.0092 26.9 10.5 102 176-287 78-201 (461)
232 COG4015 Predicted dinucleotide 31.9 78 0.0017 28.1 4.3 37 158-203 107-143 (217)
233 TIGR02512 Fe_only_hydrog hydro 31.9 14 0.00029 36.5 -0.4 32 169-204 100-134 (374)
234 COG4822 CbiK Cobalamin biosynt 31.1 4.4E+02 0.0095 24.5 11.8 133 142-287 90-235 (265)
235 cd01966 Nitrogenase_NifN_1 Nit 31.0 5.5E+02 0.012 25.6 12.7 107 162-286 60-189 (417)
236 cd00316 Oxidoreductase_nitroge 30.6 5E+02 0.011 25.1 12.1 24 268-291 166-189 (399)
237 cd00954 NAL N-Acetylneuraminic 30.5 4.6E+02 0.0099 24.5 13.2 46 139-187 17-65 (288)
238 TIGR01861 ANFD nitrogenase iro 30.5 2.2E+02 0.0047 29.5 8.1 38 247-293 203-240 (513)
239 COG0041 PurE Phosphoribosylcar 30.5 2.3E+02 0.005 24.8 6.9 54 225-287 10-63 (162)
240 CHL00076 chlB photochlorophyll 30.2 2.8E+02 0.006 28.7 8.9 25 268-292 180-204 (513)
241 PRK00694 4-hydroxy-3-methylbut 30.2 4.4E+02 0.0096 27.9 10.1 96 140-241 180-292 (606)
242 COG3246 Uncharacterized conser 30.2 5.1E+02 0.011 25.0 12.1 61 138-202 24-86 (298)
243 TIGR00284 dihydropteroate synt 29.6 6.5E+02 0.014 26.1 14.5 115 143-282 165-280 (499)
244 COG0436 Aspartate/tyrosine/aro 29.3 5.7E+02 0.012 25.3 11.4 29 253-285 172-200 (393)
245 smart00642 Aamy Alpha-amylase 29.1 2.7E+02 0.0059 24.0 7.4 56 230-286 18-88 (166)
246 TIGR01860 VNFD nitrogenase van 28.8 6.3E+02 0.014 25.6 11.7 106 176-291 112-237 (461)
247 PRK12435 ferrochelatase; Provi 28.7 2E+02 0.0043 27.7 7.1 67 169-237 192-269 (311)
248 cd01771 Faf1_UBX Faf1 UBX doma 28.4 61 0.0013 24.8 2.8 22 81-102 2-23 (80)
249 PF04273 DUF442: Putative phos 28.4 3.2E+02 0.0069 22.1 8.1 78 198-285 9-90 (110)
250 PF02219 MTHFR: Methylenetetra 28.4 5E+02 0.011 24.3 10.0 46 138-187 80-135 (287)
251 PF00148 Oxidored_nitro: Nitro 28.1 4.6E+02 0.0099 25.5 9.7 20 268-287 158-177 (398)
252 KOG1160 Fe-S oxidoreductase [E 27.9 3.5E+02 0.0075 27.9 8.5 41 160-205 354-394 (601)
253 cd06660 Aldo_ket_red Aldo-keto 27.4 4.8E+02 0.01 23.8 14.2 113 138-259 88-203 (285)
254 cd01973 Nitrogenase_VFe_beta_l 27.4 6.6E+02 0.014 25.4 11.3 102 176-287 72-194 (454)
255 PRK11613 folP dihydropteroate 27.4 5.5E+02 0.012 24.5 15.9 99 138-254 33-141 (282)
256 PRK14476 nitrogenase molybdenu 27.3 6.6E+02 0.014 25.4 11.5 103 164-286 72-200 (455)
257 PF14117 DUF4287: Domain of un 27.2 81 0.0018 23.0 3.1 30 8-38 11-40 (61)
258 PF03830 PTSIIB_sorb: PTS syst 27.2 1.8E+02 0.0039 24.9 5.8 118 159-292 25-147 (151)
259 PF06627 DUF1153: Protein of u 27.1 54 0.0012 25.9 2.3 30 8-37 57-89 (90)
260 PRK11161 fumarate/nitrate redu 26.8 1.1E+02 0.0023 27.3 4.6 28 120-147 4-31 (235)
261 TIGR01361 DAHP_synth_Bsub phos 26.8 1.5E+02 0.0032 27.8 5.6 61 224-285 32-93 (260)
262 PF10096 DUF2334: Uncharacteri 26.4 3.6E+02 0.0078 24.8 8.1 37 222-258 5-43 (243)
263 TIGR02495 NrdG2 anaerobic ribo 26.2 1.4E+02 0.0031 25.8 5.2 37 207-244 146-183 (191)
264 COG2344 AT-rich DNA-binding pr 26.0 1.1E+02 0.0024 27.8 4.3 122 123-255 52-181 (211)
265 TIGR00666 PBP4 D-alanyl-D-alan 25.7 88 0.0019 30.5 4.1 30 161-191 55-84 (345)
266 PRK11858 aksA trans-homoaconit 25.6 4E+02 0.0086 26.3 8.7 71 139-212 108-181 (378)
267 cd08357 Glo_EDI_BRP_like_18 Th 24.5 1.7E+02 0.0038 22.5 5.0 45 56-100 80-124 (125)
268 PRK03170 dihydrodipicolinate s 24.3 5.9E+02 0.013 23.7 12.3 46 139-187 18-65 (292)
269 PRK09389 (R)-citramalate synth 24.3 3.9E+02 0.0084 27.5 8.6 63 138-203 105-168 (488)
270 PF13223 DUF4031: Protein of u 24.0 1.7E+02 0.0037 22.8 4.5 51 1-65 13-63 (83)
271 PF02684 LpxB: Lipid-A-disacch 23.9 5.8E+02 0.013 25.3 9.5 108 159-285 24-156 (373)
272 PF07325 Curto_V2: Curtovirus 23.6 1.1E+02 0.0024 25.0 3.5 57 2-58 29-97 (126)
273 TIGR00736 nifR3_rel_arch TIM-b 23.4 5.9E+02 0.013 23.5 10.3 116 160-291 16-144 (231)
274 TIGR02660 nifV_homocitr homoci 23.3 4.7E+02 0.01 25.6 8.7 71 139-212 105-178 (365)
275 PTZ00413 lipoate synthase; Pro 23.2 2.7E+02 0.0058 28.0 6.8 63 171-237 175-249 (398)
276 PF00682 HMGL-like: HMGL-like 22.8 4.4E+02 0.0094 23.6 7.9 100 138-242 99-206 (237)
277 PRK14477 bifunctional nitrogen 22.7 1.1E+03 0.024 26.3 12.8 117 161-295 90-224 (917)
278 COG3904 Predicted periplasmic 22.5 2.2E+02 0.0049 26.2 5.6 83 88-186 15-99 (245)
279 TIGR01259 comE comEA protein. 22.5 94 0.002 25.6 3.1 54 8-64 61-117 (120)
280 COG0276 HemH Protoheme ferro-l 22.3 7.3E+02 0.016 24.2 11.5 111 161-281 90-221 (320)
281 PF13344 Hydrolase_6: Haloacid 22.0 1.3E+02 0.0027 23.7 3.7 78 160-252 5-86 (101)
282 PF07505 Gp37_Gp68: Phage prot 21.6 6.9E+02 0.015 23.6 10.5 121 160-290 77-230 (261)
283 PF11396 DUF2874: Protein of u 21.5 1.5E+02 0.0033 20.5 3.7 45 51-97 6-51 (61)
284 cd07941 DRE_TIM_LeuA3 Desulfob 21.5 5.3E+02 0.011 24.0 8.4 99 139-242 111-220 (273)
285 PF00809 Pterin_bind: Pterin b 21.5 5.7E+02 0.012 22.8 8.3 101 138-255 14-125 (210)
286 TIGR03540 DapC_direct LL-diami 21.3 7.3E+02 0.016 23.7 11.1 22 264-285 180-201 (383)
287 cd08351 ChaP_like ChaP, an enz 21.2 2.6E+02 0.0056 21.9 5.4 49 55-103 72-123 (123)
288 PHA02754 hypothetical protein; 21.1 1.1E+02 0.0024 22.2 2.8 40 54-98 20-59 (67)
289 TIGR03099 dCO2ase_PEP1 pyridox 21.1 7.8E+02 0.017 24.0 11.2 6 162-167 95-100 (398)
290 PRK14019 bifunctional 3,4-dihy 20.9 8.2E+02 0.018 24.2 11.3 31 12-42 173-203 (367)
291 TIGR02109 PQQ_syn_pqqE coenzym 20.8 5.5E+02 0.012 24.6 8.6 68 207-277 138-209 (358)
292 PF08479 POTRA_2: POTRA domain 20.8 19 0.00042 26.8 -1.3 46 41-88 28-73 (76)
293 PF02784 Orn_Arg_deC_N: Pyrido 20.8 3.8E+02 0.0082 24.3 7.1 109 158-283 62-195 (251)
294 cd04752 Commd4 COMM_Domain con 20.7 2.2E+02 0.0047 24.9 5.2 50 9-70 57-106 (174)
295 PRK13398 3-deoxy-7-phosphohept 20.5 4.3E+02 0.0094 24.8 7.5 58 227-285 37-95 (266)
296 KOG4175 Tryptophan synthase al 20.4 6.8E+02 0.015 23.1 9.5 116 158-285 16-152 (268)
297 PRK00915 2-isopropylmalate syn 20.3 5.2E+02 0.011 26.7 8.6 62 139-203 112-174 (513)
298 PRK05301 pyrroloquinoline quin 20.3 7.9E+02 0.017 23.8 14.2 68 207-277 147-218 (378)
299 PLN02892 isocitrate lyase 20.2 2.4E+02 0.0052 29.7 6.0 56 227-285 410-467 (570)
300 PF07587 PSD1: Protein of unkn 20.2 1.6E+02 0.0036 27.5 4.6 51 14-64 3-61 (266)
301 cd00408 DHDPS-like Dihydrodipi 20.1 6.9E+02 0.015 23.0 13.3 46 139-187 14-61 (281)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.1e-87 Score=647.13 Aligned_cols=292 Identities=35% Similarity=0.493 Sum_probs=276.9
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCC-cE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TV 84 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dg-t~ 84 (327)
..++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|+++ |.+..++++..+.|.|| |+
T Consensus 7 ~~~l~~l~~~el~~~~~~~g~~~fRa~Qi~~wiy~~~~~-~~~~mtnlpk~lR~~L~~~-~~i~~l~~~~~~~S~Dg~T~ 84 (371)
T PRK14461 7 QRNLYDLNLAELTELLTAWGQPAFRARQLYRHLYVNLAD-SVLAMTDLPLALRERLTAE-LPLSTLRLEQVQIGDNGLTR 84 (371)
T ss_pred CcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CHHHccccCHHHHHHHhhc-cccCCcceEEEEECCCCCeE
Confidence 357899999999999999999999999999999999999 9999999999999999999 99999999999999999 99
Q ss_pred EEEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-------
Q 043340 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK------- 157 (327)
Q Consensus 85 K~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~------- 157 (327)
||||+|+||..||||+||++ .|.|+|||||+||+|+|.||+||++|+.||||++||++|+..+.+.+.
T Consensus 85 K~L~~l~DG~~IEtVli~~~-----~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~ 159 (371)
T PRK14461 85 KALFRLPDGAVVETVLMIYP-----DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAIS 159 (371)
T ss_pred EEEEEcCCCCEEEEEEEecC-----CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999976 479999999999999999999999999999999999999998866431
Q ss_pred -------CCcceEEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec------
Q 043340 158 -------HRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------ 222 (327)
Q Consensus 158 -------~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------ 222 (327)
.+++|||||||||||+||++|.++++.+.+ .+++|.|+|||||+|++|.|++|+++.++++||||
T Consensus 160 ~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~ 239 (371)
T PRK14461 160 KRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDD 239 (371)
T ss_pred cccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCH
Confidence 358999999999999999999999999975 48999999999999999999999999889999999
Q ss_pred ---------------------------------------ccCCCCcHHHHHHHHHHHHhcC----CcceEEEEeccCCCC
Q 043340 223 ---------------------------------------SAGVNDQVEHAVELAELLHEWG----RGHHVNLIPFNPIEG 259 (327)
Q Consensus 223 ---------------------------------------I~GvND~~e~a~~L~~~l~~l~----~~~~vnLIp~np~~~ 259 (327)
|+|+||+++||++|++++++++ ..++||||||||+++
T Consensus 240 e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~ 319 (371)
T PRK14461 240 ALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPG 319 (371)
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCC
Confidence 9999999999999999999862 148999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcccccccchhhhh
Q 043340 260 SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304 (327)
Q Consensus 260 ~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~ 304 (327)
.+|++|+++++++|+++|+++|+.|++|+++|+||+||||||+.+
T Consensus 320 ~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~ 364 (371)
T PRK14461 320 TPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGR 364 (371)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccC
Confidence 999999999999999999999999999999999999999999863
No 2
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.4e-82 Score=609.49 Aligned_cols=291 Identities=34% Similarity=0.459 Sum_probs=274.1
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 85 (327)
..++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|+++ |.+..+++...+.|.|||+|
T Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~fra~Qi~~wiy~~~~~-~~~~mt~l~~~~r~~L~~~-~~~~~~~~~~~~~s~dgt~K 81 (342)
T PRK14465 4 KIPLKGRTLKELSEIMVSLGEKKFRAKQIYHGLYVNRYE-TWDQFTTFSKEVKEKLEEL-CSLTELEVVKDLKSVDGTQK 81 (342)
T ss_pred ccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CHHHhccccHHHHHHHhcc-cccCCccEEEEEEcCCCcEE
Confidence 357899999999999999999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEE
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVF 165 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf 165 (327)
|||+|+||+.||||+||+++ + .|.|+|||||+||+|+|.||+++++++.||++++||++|+..+.+.++.++.+|||
T Consensus 82 ~l~~l~Dg~~iEtV~i~~~~--~-~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVF 158 (342)
T PRK14465 82 FTFYSGEGKEFEAVWIPSGD--G-GRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVF 158 (342)
T ss_pred EEEEcCCCCEEEEEEeEecC--C-CceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999752 2 48999999999999999999999999999999999999999877655567999999
Q ss_pred eeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec---------------------
Q 043340 166 MGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------- 222 (327)
Q Consensus 166 ~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS--------------------- 222 (327)
|||||||+|+++|.++++++++ .++++.++|+|||||++|.+.+|++...+++|+||
T Consensus 159 mGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~l 238 (342)
T PRK14465 159 MGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPL 238 (342)
T ss_pred EcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCH
Confidence 9999999999999999999975 47899999999999999999999976667899999
Q ss_pred ------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 043340 223 ------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 ------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~ 278 (327)
|||+||++|++++|++++++++ ++||||||||. +.+|++|+++++++|+++|+
T Consensus 239 e~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~--~kVnLIPyN~~-~~~~~~ps~e~i~~F~~~L~ 315 (342)
T PRK14465 239 EELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLD--CKINVIPLNTE-FFGWRRPTDDEVAEFIMLLE 315 (342)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCC--CcEEEEccCCC-CCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999975 89999999996 57899999999999999999
Q ss_pred hCCCeEEEcCCCCcccccccchhhhh
Q 043340 279 SHKITTSIRQTRGLDASAACGQLRNE 304 (327)
Q Consensus 279 ~~gi~v~vR~~~G~di~aaCGqL~~~ 304 (327)
++|+.|++|+++|.||+||||||+.+
T Consensus 316 ~~Gi~v~~R~~~G~di~aACGqL~~~ 341 (342)
T PRK14465 316 PAGVPILNRRSPGKDIFGACGMLASK 341 (342)
T ss_pred HCCCeEEEeCCCCcChhhcCCccccC
Confidence 99999999999999999999999763
No 3
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.5e-82 Score=614.61 Aligned_cols=290 Identities=38% Similarity=0.511 Sum_probs=274.4
Q ss_pred cCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCC-cEEE
Q 043340 8 PAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG-TVKL 86 (327)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dg-t~K~ 86 (327)
++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|+|||+++|++|+++ |.+..++++..+.|.|| |+||
T Consensus 23 ~l~~l~~~el~~~~~~~g~~~~ra~Qi~~wiy~~~~~-~~~~mt~l~k~~r~~L~~~-~~~~~~~~~~~~~s~dg~t~K~ 100 (373)
T PRK14459 23 HLADLTPAERREAVAELGLPAFRAKQLARHYFGRLTA-DPAQMTDLPAAAREELAEA-LFPTLLTPVRTLEADDGTTRKT 100 (373)
T ss_pred CcccCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCC-CHHHhcccCHHHHHHHHhh-cccCCceEEEEEEcCCCCEEEE
Confidence 6899999999999999999999999999999999999 9999999999999999999 99999999999999999 9999
Q ss_pred EEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc--------C
Q 043340 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK--------H 158 (327)
Q Consensus 87 l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~--------~ 158 (327)
||+|+||+.||||+||++ .|.|+|||+|+||+|+|.||+++.+++.|+||++||++|+..+.+.+. .
T Consensus 101 l~~l~Dg~~iEtV~i~~~-----~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~ 175 (373)
T PRK14459 101 LWRLHDGTLVESVLMRYP-----DRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPG 175 (373)
T ss_pred EEEcCCCCEEEEEEEEEc-----CCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCC
Confidence 999999999999999986 479999999999999999999999999999999999999998876542 3
Q ss_pred CcceEEEeeCCCCcCChhhHHHHHHHhhh----ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec------------
Q 043340 159 RVTNVVFMGMGEPMLNLKSVLEAHRCLNK----DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------ 222 (327)
Q Consensus 159 ~v~~Ivf~G~GEPlln~~~v~~~i~~l~~----~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------------ 222 (327)
+++|||||||||||+|+++|.++++.+++ .+|++.++|||||+|++|.|++|++++++++|+||
T Consensus 176 ~i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l 255 (373)
T PRK14459 176 RLSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDEL 255 (373)
T ss_pred ceeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHh
Confidence 48899999999999999999999999975 37999999999999999999999999888889998
Q ss_pred ---------------------------------ccCCCCcHHHHHHHHHHHHhcC-CcceEEEEeccCCCCCCCCCCcHH
Q 043340 223 ---------------------------------SAGVNDQVEHAVELAELLHEWG-RGHHVNLIPFNPIEGSDYQRPYKK 268 (327)
Q Consensus 223 ---------------------------------I~GvND~~e~a~~L~~~l~~l~-~~~~vnLIp~np~~~~~~~~p~~e 268 (327)
|+|+||+++||++|++++++++ ..++||||||||.++..|++|+.+
T Consensus 256 ~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~ 335 (373)
T PRK14459 256 VPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPE 335 (373)
T ss_pred cCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHH
Confidence 9999999999999999999962 148999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCcccccccchhhhh
Q 043340 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304 (327)
Q Consensus 269 ~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~ 304 (327)
++++|+++|+++|+.|++|+++|.||+||||||+.+
T Consensus 336 ~~~~F~~~L~~~gi~~tiR~~~G~dI~aACGQL~~~ 371 (373)
T PRK14459 336 VEREFVRRLRAAGVPCTVRDTRGQEIDGACGQLAAE 371 (373)
T ss_pred HHHHHHHHHHHCCCeEEeeCCCCcCHhhcCCccccc
Confidence 999999999999999999999999999999999864
No 4
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=7.1e-82 Score=599.71 Aligned_cols=293 Identities=42% Similarity=0.633 Sum_probs=279.2
Q ss_pred ccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEE
Q 043340 7 APAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~ 86 (327)
.++++|+.+++++|+.++|+++|||+|||+|+|++++. +|++||||||++|++|+++ |.+..++++..+.|.|||+||
T Consensus 2 ~~l~~l~~~~~~~~~~~~g~~~fra~Qi~~W~y~~~~~-~f~~Mtnl~k~~r~~L~~~-~~~~~~~~~~~~~s~dGT~K~ 79 (349)
T COG0820 2 RNLLDLTRAELAEWLAELGLKKFRAKQLFKWIYQKGVD-DFDEMTDLSKGLRAKLKEA-FFINLLKVVEVQESSDGTIKW 79 (349)
T ss_pred cchhhcCHHHHHHHHHhcCccchHHHHHHHHHHHHhcc-CHHHhccccHHHHHHHHHh-hccccceEEEEEEcCCCCEEE
Confidence 47899999999999999999999999999999999999 9999999999999999999 999999999999999999999
Q ss_pred EEE-ecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC----Ccc
Q 043340 87 LIK-LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH----RVT 161 (327)
Q Consensus 87 l~~-l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~----~v~ 161 (327)
||+ ++||..||||+||++ .|.|+|||+|+||+++|+||+||+.|+.|||+++||++|+..+.+.++. +++
T Consensus 80 l~~~l~dg~~iEtV~ip~~-----~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~ 154 (349)
T COG0820 80 LFEVLPDGTMIETVLIPEK-----DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRIS 154 (349)
T ss_pred EEEEcCCCCEEEEEEEEec-----CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceee
Confidence 999 999999999999987 3799999999999999999999999999999999999999998876643 599
Q ss_pred eEEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec-----------------
Q 043340 162 NVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------------- 222 (327)
Q Consensus 162 ~Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS----------------- 222 (327)
|||||||||||+|+++|..+++.+.+ ++|+|+|+|||||+|++|.|.+|++..+++.||||
T Consensus 155 NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink 234 (349)
T COG0820 155 NVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINK 234 (349)
T ss_pred eEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhcccc
Confidence 99999999999999999999999984 58899999999999999999999987789999999
Q ss_pred ----------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHH
Q 043340 223 ----------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFA 274 (327)
Q Consensus 223 ----------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~ 274 (327)
++||||+.++|++|++++++++ ++||||||||.++..|.+|+.+++.+|+
T Consensus 235 ~~~~e~l~~a~r~Y~~~t~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~--~~VNLIP~Np~~~~~y~r~~~~~i~~F~ 312 (349)
T COG0820 235 KYPIEELLEAIRYYPEKSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIP--CKVNLIPYNPVPGSDYERSSKERIRKFL 312 (349)
T ss_pred CCCHHHHHHHHHhhhhccCceEEEEeeecccccCCHHHHHHHHHHhcCCC--ceEEEeecCCCCCCCccCCcHHHHHHHH
Confidence 9999999999999999999964 7999999999999999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCcccccccchhhhhhccC
Q 043340 275 GALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308 (327)
Q Consensus 275 ~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~~~ 308 (327)
++|.++|+.++||.++|.||+||||||+.+..++
T Consensus 313 ~~L~~~gv~~tvR~~~g~DIdaACGQL~~~~~~~ 346 (349)
T COG0820 313 KILKKAGVLVTVRKTRGDDIDAACGQLRGKRIKR 346 (349)
T ss_pred HHHHhCCeeEEeccccccccccccchhhhhhchh
Confidence 9999999999999999999999999999877543
No 5
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.3e-81 Score=604.88 Aligned_cols=291 Identities=51% Similarity=0.809 Sum_probs=276.2
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHh-cCCCCCCCceeeEEecCCCcE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQE-AGWTVGRLPIFRTVTAADGTV 84 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~-~~~~~~~~~~~~~~~s~dgt~ 84 (327)
.+++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|++ . |.+..++++.++.|.|||+
T Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~w~~~~~~~-~~~~m~~l~~~~r~~l~~~~-~~~~~~~~~~~~~s~dgt~ 78 (345)
T PRK14457 1 MKPLLGRSLAELEDWAVAQGQPAFRGRQLHDWLYNKGVR-SLDEISVLPKAWRESLKDDG-VPIGRLTIVERSVAPDGTL 78 (345)
T ss_pred CCccccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCC-CHHHcCccCHHHHHHHhhcC-ccccCceEEEEEEcCCCcE
Confidence 368999999999999999999999999999999999999 999999999999999999 8 8999999999999999999
Q ss_pred EEEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEE
Q 043340 85 KLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVV 164 (327)
Q Consensus 85 K~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Iv 164 (327)
||||+|+||+.||||+||++ .|.|+|||||+||||+|.||+++.+++.++++++||++|+..+.+.++..+++||
T Consensus 79 K~l~~l~dg~~iE~v~~~~~-----~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~~~~~Iv 153 (345)
T PRK14457 79 KLLLSTEDGEIIETVGIPTE-----KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQRRVSHVV 153 (345)
T ss_pred EEEEEcCCCCEEEEEEEEcC-----CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999975 4899999999999999999999999999999999999999988776656799999
Q ss_pred EeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcC------CCcceeec----------------
Q 043340 165 FMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLAIR---------------- 222 (327)
Q Consensus 165 f~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~------~~v~lavS---------------- 222 (327)
||||||||+|+++|.++++.+++.+|+|.++|||||+|++|.+++|++.. ++++|++|
T Consensus 154 fmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~ 233 (345)
T PRK14457 154 FMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSA 233 (345)
T ss_pred EEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCc
Confidence 99999999999999999999976689999999999999999999999876 46788888
Q ss_pred -----------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHH
Q 043340 223 -----------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAF 273 (327)
Q Consensus 223 -----------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f 273 (327)
|||+||+++++++|++|+++++ ++||||||||.++.+|++|+++++++|
T Consensus 234 ~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f 311 (345)
T PRK14457 234 KNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQ--SHVNLIPYNPIDEVEFQRPSPKRIQAF 311 (345)
T ss_pred cCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCC--CeEEEecCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999975 799999999999999999999999999
Q ss_pred HHHHHhCCCeEEEcCCCCcccccccchhhhhh
Q 043340 274 AGALESHKITTSIRQTRGLDASAACGQLRNEF 305 (327)
Q Consensus 274 ~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~ 305 (327)
+++|+++|+++++|+++|+||+||||||+.++
T Consensus 312 ~~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~~ 343 (345)
T PRK14457 312 QRVLEQRGVAVSVRASRGLDANAACGQLRRNA 343 (345)
T ss_pred HHHHHHCCCeEEEeCCCCCchhhccccchhcc
Confidence 99999999999999999999999999998754
No 6
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.4e-80 Score=599.76 Aligned_cols=292 Identities=35% Similarity=0.523 Sum_probs=272.9
Q ss_pred ccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEE
Q 043340 7 APAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~ 86 (327)
.++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|++. |.+..+++. .+.+.|||+||
T Consensus 2 ~~l~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~-~~~~~dgt~K~ 78 (348)
T PRK14467 2 ENIKNYNLEELEEFVVELGWEKYRAKQIAKWVYKKKVT-DFDEMTDLSKEDRQLLKEN-FEFHTLELL-DRVEADDSVKY 78 (348)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCC-CHHHhccccHHHHHHHhcC-cccCCceee-EEEcCCCeEEE
Confidence 57899999999999999999999999999999999999 9999999999999999999 999999999 66778999999
Q ss_pred EEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-CCcceEEE
Q 043340 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-HRVTNVVF 165 (327)
Q Consensus 87 l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~-~~v~~Ivf 165 (327)
||+|+||..||||+||+. .|.|+|||||+||+|+|.||+|+.+|+.|++|++||++|+..+...++ .++.+|||
T Consensus 79 l~~~~dg~~vE~V~i~~~-----~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~Vvf 153 (348)
T PRK14467 79 LFKTKDGHTIETVLIKER-----DHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVF 153 (348)
T ss_pred EEEcCCCCEEEEEEEEeC-----CCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 999999999999999976 379999999999999999999999999999999999999998877653 35899999
Q ss_pred eeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcC--CCcceeec-------------------
Q 043340 166 MGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYK--LQSTLAIR------------------- 222 (327)
Q Consensus 166 ~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~--~~v~lavS------------------- 222 (327)
|||||||+|+++|.++++.+++ .+++|.|+|+|||+|+++.|++++.+. ..++|++|
T Consensus 154 mGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p~~~~~ 233 (348)
T PRK14467 154 MGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIMPISKTN 233 (348)
T ss_pred EccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhcCCcccc
Confidence 9999999999999999999974 478899999999999999999988765 36788888
Q ss_pred --------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHH
Q 043340 223 --------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276 (327)
Q Consensus 223 --------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~ 276 (327)
|||+||+++++++|++++++++..++||||||||.++.+|++|+++++++|+++
T Consensus 234 ~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~ 313 (348)
T PRK14467 234 TLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKI 313 (348)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999997545899999999999999999999999999999
Q ss_pred HHhCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 277 LESHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 277 L~~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
|+++|+.+++|+++|+||+||||||+.+..
T Consensus 314 L~~~gi~v~vR~~~G~di~aaCGqL~~~~~ 343 (348)
T PRK14467 314 LWDNGISTFVRWSKGVDIFGACGQLRKKRV 343 (348)
T ss_pred HHHCCCcEEEeCCCCcchhhcccchhHhhh
Confidence 999999999999999999999999987653
No 7
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.3e-80 Score=595.00 Aligned_cols=289 Identities=35% Similarity=0.533 Sum_probs=272.0
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 85 (327)
.+++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|+++ |.+..+++...+.|.|||+|
T Consensus 4 ~~~l~~l~~~el~~~~~~~g~~~fra~Qi~~wi~~~~~~-~~~~mt~l~~~~r~~L~~~-~~~~~~~~~~~~~s~dgt~K 81 (345)
T PRK14466 4 KYPLLGMTLEELQSVAKRLGMPAFAAKQIASWLYDKKVT-SIDEMTNISLAHREKLAEE-YEIGAYAPVDEQRSVDGTIK 81 (345)
T ss_pred CcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCC-CHHHHhhhhHHHHHhhcCC-eEecCceEEEEEEcCCCeEE
Confidence 467999999999999999999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEE
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVF 165 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf 165 (327)
|||+++||..||||+||++ .|.|+|||+|+|||++|.||+++.+++.+++|++||++|+...... .++++|||
T Consensus 82 ~l~~l~dg~~iEsVlip~~-----~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~--~~i~nIvf 154 (345)
T PRK14466 82 YLFPVGEGHFVESVYIPEE-----DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER--DKLTNLVF 154 (345)
T ss_pred EEEEcCCCCEEEEEEEecC-----CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc--CCCCeEEE
Confidence 9999999999999999976 4899999999999999999999999999999999999999887432 36899999
Q ss_pred eeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec---------------------
Q 043340 166 MGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------- 222 (327)
Q Consensus 166 ~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS--------------------- 222 (327)
|||||||+|+++|.++++.+++ .+|+|.++|+|+|||+.|.++++++.. +++|++|
T Consensus 155 mGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~-~~~LavSLha~~~e~R~~i~P~~~~~~l 233 (345)
T PRK14466 155 MGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEES-ECHLAISLHSPFPEQRRELMPAEKAFSI 233 (345)
T ss_pred eeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhcc-CcEEEEEcCCCCHHHHHHhcCCccCCCH
Confidence 9999999999999999999975 478899999999999999999988763 6788888
Q ss_pred ------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 043340 223 ------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 ------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~ 278 (327)
|+|+||+++||++|++++++++ ++||||||||.++..|++|+++++++|+++|+
T Consensus 234 ~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~--~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~ 311 (345)
T PRK14466 234 KEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGID--CRVNLIRFHAIPGVDLEGSDMARMEAFRDYLT 311 (345)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999865 89999999999988999999999999999999
Q ss_pred hCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 279 SHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 279 ~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
++|+.+++|+++|+||+||||||+.+..
T Consensus 312 ~~gi~~tvR~s~G~dI~aACGQL~~~~~ 339 (345)
T PRK14466 312 SHGVFTTIRASRGEDIFAACGMLSTAKQ 339 (345)
T ss_pred HCCCcEEEeCCCCCchhhcCccchhhhh
Confidence 9999999999999999999999987654
No 8
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.1e-80 Score=595.52 Aligned_cols=291 Identities=36% Similarity=0.571 Sum_probs=275.7
Q ss_pred ccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecC-CCcEE
Q 043340 7 APAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAA-DGTVK 85 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~-dgt~K 85 (327)
.++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|++. |.+..+++..++.|. |||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~~dgt~k 79 (342)
T PRK14454 2 KNILDFTLEELKEWMKENGEKKFRAKQIFDWIYKKGVT-DFDEMTNIPKNLREKLKEN-FYIGIPKIVKKLVSKIDGTVK 79 (342)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CHHHhccccHHHHHHHHhc-eecCCccEEEEEEecCCCeEE
Confidence 57899999999999999999999999999999999999 9999999999999999999 999999999999995 99999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEE
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVF 165 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf 165 (327)
|||+|+||..||||+||++ .|.|+|||||+||||+|.||+++.+|+.|++|++||++|+......++..+++|||
T Consensus 80 ~l~~~~dg~~iE~V~i~~~-----~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~ 154 (342)
T PRK14454 80 FLFELEDGNIIESVVMKYK-----HGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGERISNIVL 154 (342)
T ss_pred EEEEcCCCCEEEEEEEEEc-----CCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 9999999999999999976 36899999999999999999999999999999999999999988776657899999
Q ss_pred eeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec---------------------
Q 043340 166 MGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------- 222 (327)
Q Consensus 166 ~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS--------------------- 222 (327)
|||||||+|+++|.++++.+++ .+++|.|||+|+|+|++|.+.+|++..+++++++|
T Consensus 155 mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L 234 (342)
T PRK14454 155 MGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSI 234 (342)
T ss_pred ECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCH
Confidence 9999999999999999999985 47889999999999999999999998777788888
Q ss_pred ------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 043340 223 ------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 ------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~ 278 (327)
|||+||+++++++|+++++++ .++||||||||.++.+|++|+++++++|+++|+
T Consensus 235 ~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l--~~~VnLiPyn~~~~~~~~~ps~e~l~~f~~~l~ 312 (342)
T PRK14454 235 EELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGM--LCHVNLIPVNEVKENGFKKSSKEKIKKFKNILK 312 (342)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcC--CceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999986 379999999999999999999999999999999
Q ss_pred hCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 279 SHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 279 ~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
++|+++++|.++|+||+||||||+.+..
T Consensus 313 ~~gi~v~iR~~~G~di~aaCGQL~~~~~ 340 (342)
T PRK14454 313 KNGIETTIRREMGSDINAACGQLRRSYL 340 (342)
T ss_pred HCCCcEEEeCCCCCchhhcCcccchhhc
Confidence 9999999999999999999999987644
No 9
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.6e-79 Score=591.31 Aligned_cols=292 Identities=38% Similarity=0.599 Sum_probs=271.1
Q ss_pred ccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEE
Q 043340 7 APAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~ 86 (327)
+++++|+++||++++ +|+|||+|||+|||++++. +|++|||||+++|+.|+++ |.+..++++..+.|.|||+||
T Consensus 3 ~~l~~~~~~el~~~~----~~~~ra~qi~~~~~~~~~~-~~~~mt~l~~~~r~~L~~~-~~~~~~~~~~~~~s~dgt~K~ 76 (356)
T PRK14462 3 KNIYDFTLEELSELL----KPSFRAKQIYQWLYAKYAT-SFDDMKNLPKDLREYLAQE-FTLDPLKIVKVEQSKDGSKKY 76 (356)
T ss_pred CccccCCHHHHHHHh----ccchHHHHHHHHHHhcCCC-CHHHhccccHHHHHHHhhc-cccCCcceEEEEEcCCCeEEE
Confidence 578999999999999 3999999999999999999 9999999999999999999 999999999999999999999
Q ss_pred EEEecCCCeEEEEeeccCCC--------CCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-
Q 043340 87 LIKLEDNRLIETVGIPVEDE--------KGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK- 157 (327)
Q Consensus 87 l~~l~dg~~iE~V~i~~~~~--------~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~- 157 (327)
||+|+||+.||||+||++++ .+..|.|+|||+|+||+++|.||+||.+|+.|++|++||++|+..+.+.+.
T Consensus 77 l~~l~Dg~~iEtV~i~~~~~~~~~~~~~~~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~ 156 (356)
T PRK14462 77 LFKLRDGHTVEAVLLKMKDEKIDEEGKILEHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNI 156 (356)
T ss_pred EEEcCCCCEEEEEEeeccccccccccccccCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999997521 112489999999999999999999999999999999999999998776543
Q ss_pred --CCcceEEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec-----------
Q 043340 158 --HRVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR----------- 222 (327)
Q Consensus 158 --~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS----------- 222 (327)
.+++|||||||||||+|+++|.++++.+++ ++++|+|+|||||+|++|.+++|++..+++.|++|
T Consensus 157 ~~~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~ 236 (356)
T PRK14462 157 PYEKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSE 236 (356)
T ss_pred cccccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHH
Confidence 247899999999999999999999999986 47889999999999999999999988777889888
Q ss_pred ----------------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHH
Q 043340 223 ----------------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268 (327)
Q Consensus 223 ----------------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e 268 (327)
|||+||++++|++|++++++++ ++||||||||.++.+|++|+++
T Consensus 237 l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPyn~~~~~~~~~ps~e 314 (356)
T PRK14462 237 LMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIK--AKVNLILFNPHEGSKFERPSLE 314 (356)
T ss_pred hCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCCCCCCCCCCCCHH
Confidence 9999999999999999999975 7999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 269 ~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
++++|+++|+++|+.|+||+++|+||+||||||+.+..
T Consensus 315 ~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~~~~~ 352 (356)
T PRK14462 315 DMIKFQDYLNSKGLLCTIRESKGLDISAACGQLREKKL 352 (356)
T ss_pred HHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhhhc
Confidence 99999999999999999999999999999999987554
No 10
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=6.9e-79 Score=590.60 Aligned_cols=292 Identities=45% Similarity=0.645 Sum_probs=274.2
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 85 (327)
..++++|+++||++++.++|+|+|||+|||+|||++++. +|++|+|||+++|++|++. |.+..+++...+.|.|||+|
T Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~dgt~K 83 (355)
T TIGR00048 6 KPSLYDLTLQELRQWLKDLGEKPFRAKQIYKWLYHKGKD-SFDDMTNLSKDLREKLNRV-FEIRTPEIAHEQRSVDGTIK 83 (355)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchhHHHHHHHHHHcCCC-CHHHccccCHHHHHHHhhc-EEeCCcceeEEEEcCCCeEE
Confidence 357899999999999999999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---cCCcce
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF---KHRVTN 162 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~---~~~v~~ 162 (327)
|||+|+||+.||||+||++ .|.|+|||+|+|||++|.||+++..++.|++|++||++|+..+...+ +.++++
T Consensus 84 ~l~~~~dg~~iE~V~i~~~-----~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~n 158 (355)
T TIGR00048 84 YLFKLGDGQTIETVLIPEK-----DRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSN 158 (355)
T ss_pred EEEEcCCCCEEEEEEEEeC-----CCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeE
Confidence 9999999999999999976 47999999999999999999999999999999999999998876544 245899
Q ss_pred EEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec------------------
Q 043340 163 VVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222 (327)
Q Consensus 163 Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------------------ 222 (327)
||||||||||+|++++.++++.+++ .+|++.++|+|+|||+++.+++|++.+++++|++|
T Consensus 159 VvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~ 238 (355)
T TIGR00048 159 VVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKK 238 (355)
T ss_pred EEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccC
Confidence 9999999999999999999999974 36799999999999999999999997777788888
Q ss_pred ---------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHH
Q 043340 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275 (327)
Q Consensus 223 ---------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~ 275 (327)
|||+||+++++++|++++++++ ++||||||||.++.+|++|+++++++|++
T Consensus 239 ~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~ 316 (355)
T TIGR00048 239 YNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTK--CKVNLIPWNPFPEADYERPSNEQIDRFAK 316 (355)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCC--CceEEEecccCCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999999975 79999999999999999999999999999
Q ss_pred HHHhCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 276 ALESHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 276 ~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
+|.++|+.|++|.++|.||+||||||+.+..
T Consensus 317 ~L~~~gi~v~iR~~~G~di~aaCGqL~~~~~ 347 (355)
T TIGR00048 317 TLMSYGFTVTIRKSRGDDIDAACGQLRAKDV 347 (355)
T ss_pred HHHHCCCeEEEeCCCCcchhhcCCcchhhhc
Confidence 9999999999999999999999999987543
No 11
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.7e-79 Score=591.90 Aligned_cols=290 Identities=37% Similarity=0.542 Sum_probs=272.1
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 85 (327)
..++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|+++ |.+..+++...+.|.|||+|
T Consensus 5 ~~~l~~~~~~el~~~~~~~g~~~~ra~qi~~w~y~~~~~-~~~~mt~l~~~~r~~L~~~-~~~~~~~~~~~~~s~dgt~K 82 (372)
T PRK11194 5 KINLLDLNRQQMREFFAELGEKPFRADQVMKWIYHYGCD-DFDEMTNINKVLREKLKEV-AEIRAPEVAEEQRSSDGTIK 82 (372)
T ss_pred ccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCC-CHHHhccccHHHHHHHhcc-cccCCcccceEEEcCCCeEE
Confidence 357899999999999999999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-------C
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-------H 158 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~-------~ 158 (327)
|||+|+| +.||||+||++ .|.|+|||||+||+|+|.||+|+.+|+.|+||++||++|+..+...++ .
T Consensus 83 ~l~~l~D-~~iEsV~~~~~-----~~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~ 156 (372)
T PRK11194 83 WAIAVGD-QRVETVYIPED-----DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQR 156 (372)
T ss_pred EEEEcCC-CeEEEEEEEcC-----CCeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 9999999 99999999976 479999999999999999999999999999999999999998877652 3
Q ss_pred CcceEEEeeCCCCcCChhhHHHHHHHhhhc--cCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec--------------
Q 043340 159 RVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR-------------- 222 (327)
Q Consensus 159 ~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~--~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS-------------- 222 (327)
+++|||||||||||+|+++|.++++.+++. +++++|+|+|||+|++|.+++|++.. ++.|++|
T Consensus 157 ~~~nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmP 235 (372)
T PRK11194 157 PITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDELRDEIVP 235 (372)
T ss_pred ccceEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcC
Confidence 589999999999999999999999999853 67899999999999999999998763 5667666
Q ss_pred ----------------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHH
Q 043340 223 ----------------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK 268 (327)
Q Consensus 223 ----------------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e 268 (327)
|||+||+++++++|++|+++++ ++||||||||.++.+|++|+++
T Consensus 236 in~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~--~~VnLIPYN~~~~~~~~~ps~e 313 (372)
T PRK11194 236 INKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTP--CKINLIPWNPFPGAPYGRSSNS 313 (372)
T ss_pred CcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCC--ceEEEecCCCCCCCCCCCCCHH
Confidence 9999999999999999999975 7999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 269 AVLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 269 ~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
++++|.++|+++|++|++|+++|.||+||||||+.+.+
T Consensus 314 ~v~~f~~~L~~~Gi~vtiR~~~G~di~aaCGQL~~~~~ 351 (372)
T PRK11194 314 RIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 351 (372)
T ss_pred HHHHHHHHHHHCCCeEEEecCCCCcchhcCcCcHhhhh
Confidence 99999999999999999999999999999999998773
No 12
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.1e-77 Score=581.75 Aligned_cols=292 Identities=40% Similarity=0.615 Sum_probs=271.6
Q ss_pred ccCCCCCHHHHHHHHH-HcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEE
Q 043340 7 APAWPFLYPAAQVICF-FFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~-~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 85 (327)
.++++|+++||++++. ++|+|+|||+|||+|+|++++. +|++|||||+++|++|++. |.+..+++...+.|.|||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~dgt~K 79 (354)
T PRK14460 2 TNILNLTYPELEAFITAELGEPRFRARQIWQWLWQKGAR-DFDSMTNVSKALRARLAEK-AVINWPEVETVQTSSDGTVK 79 (354)
T ss_pred CCcccCCHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCC-CHHHhccccHHHHHHHhcc-eecCCcceeEEEEcCCCcEE
Confidence 4789999999999999 9999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-----CC-
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-----HR- 159 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~-----~~- 159 (327)
|||+|+||..||||+||+++ .|.|+|||+|+|||++|.||++|.+++.|++|++||++|+......+. ..
T Consensus 80 ~l~~~~dg~~iE~V~~p~~~----~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~ 155 (354)
T PRK14460 80 FLLRLADGALVETVLIPSKS----RRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPI 155 (354)
T ss_pred EEEEcCCCCEEEEEEeEcCC----CceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcc
Confidence 99999999999999999761 279999999999999999999999999999999999999987665541 12
Q ss_pred cceEEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec---------------
Q 043340 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------- 222 (327)
Q Consensus 160 v~~Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS--------------- 222 (327)
+++|+||||||||+|++++.++++.+++ .+++|.++|+|+|||+.+.+++|.+.++ +.|+||
T Consensus 156 i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l-~~L~iSLha~~~e~r~~i~p~ 234 (354)
T PRK14460 156 LRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGL-AFLAVSLHAPNQELRERIMPK 234 (354)
T ss_pred eeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCC-cEEEEeCCCCCHHHHHHhcCc
Confidence 8999999999999999999999999975 4677889999999999999999998765 567766
Q ss_pred ------------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHH
Q 043340 223 ------------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLA 272 (327)
Q Consensus 223 ------------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~ 272 (327)
|+|+||+++++++|++++++++ .+||||||||..+.+|++|+++++++
T Consensus 235 ~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~--~~VnLIpyn~~~g~~y~~p~~e~v~~ 312 (354)
T PRK14460 235 AARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTK--CKLNLIVYNPAEGLPYSAPTEERILA 312 (354)
T ss_pred cccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCC--CcEEEEcCCCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999975 69999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEcCCCCcccccccchhhhhhcc
Q 043340 273 FAGALESHKITTSIRQTRGLDASAACGQLRNEFQK 307 (327)
Q Consensus 273 f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~~ 307 (327)
|+++|+++|++|++|+++|+||+||||||+.+..+
T Consensus 313 f~~~l~~~Gi~vtir~~~G~di~aaCGqL~~~~~~ 347 (354)
T PRK14460 313 FEKYLWSKGITAIIRKSKGQDIKAACGQLKAEELG 347 (354)
T ss_pred HHHHHHHCCCeEEEeCCCCCchHhccccchhhhhh
Confidence 99999999999999999999999999999987654
No 13
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.8e-77 Score=580.96 Aligned_cols=293 Identities=37% Similarity=0.576 Sum_probs=275.2
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 85 (327)
..++++|+++||++++.++|+|+|||+|||+|+|++++. +||+|||||+++|++|+++ |.+..+++...+.|.|||+|
T Consensus 10 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~dgt~K 87 (356)
T PRK14455 10 KPSIYSLTLDELQEWLVEQGEKKFRATQIWDWLYRKRVQ-SFEEMTNLSKDLREKLNDN-FVVTTLKTRVKQESKDGTIK 87 (356)
T ss_pred CcccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CHHHhcccCHHHHHHHhcc-cccCCccEEEEEEcCCCcEE
Confidence 357899999999999999999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---cCCcce
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF---KHRVTN 162 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~---~~~v~~ 162 (327)
|||+++||+.||||+||++ .|.|+|||+|+|||++|.||+++.+++.|++|++||++|+......+ +.++++
T Consensus 88 ~l~~~~dg~~ie~V~~~~~-----~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~ 162 (356)
T PRK14455 88 FLFELPDGYLIETVLMRHE-----YGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSH 162 (356)
T ss_pred EEEEcCCCCEEEEEEEEec-----CCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcce
Confidence 9999999999999999976 37999999999999999999999999999999999999999876554 246899
Q ss_pred EEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec------------------
Q 043340 163 VVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------ 222 (327)
Q Consensus 163 Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------------------ 222 (327)
||||||||||+|++++.++++.+++ ++++|.++|+|+|||+.|.+.++++.+++++|++|
T Consensus 163 Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~ 242 (356)
T PRK14455 163 IVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINRA 242 (356)
T ss_pred EEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccC
Confidence 9999999999999999999999975 46778899999999999999999988777778777
Q ss_pred ---------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHH
Q 043340 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAG 275 (327)
Q Consensus 223 ---------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~ 275 (327)
|+|+||+++++++|++|+++++ ++||||||||.++.+|++|+++++.+|++
T Consensus 243 ~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~--~~VnLIPynp~~~~ky~~ps~e~l~~f~~ 320 (356)
T PRK14455 243 YPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIK--CHVNLIPVNPVPERDYVRTPKEDIFAFED 320 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CcEEEEecCcCCCCCCcCCCHHHHHHHHH
Confidence 9999999999999999999975 79999999999999999999999999999
Q ss_pred HHHhCCCeEEEcCCCCcccccccchhhhhhcc
Q 043340 276 ALESHKITTSIRQTRGLDASAACGQLRNEFQK 307 (327)
Q Consensus 276 ~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~~ 307 (327)
+|.++|+.+++|.++|.||+||||||+.+..+
T Consensus 321 ~L~~~gi~v~ir~~~g~di~aaCGqL~~~~~~ 352 (356)
T PRK14455 321 TLKKNGVNCTIRREHGTDIDAACGQLRAKERK 352 (356)
T ss_pred HHHHCCCcEEEeCCCCcchhhcCccchhhhhc
Confidence 99999999999999999999999999987664
No 14
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.3e-77 Score=580.10 Aligned_cols=290 Identities=36% Similarity=0.536 Sum_probs=271.2
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEec-----C
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTA-----A 80 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s-----~ 80 (327)
..++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|+++ |.+..++++.++.| .
T Consensus 17 ~~~~~~~~~~el~~~~~~~g~~~~r~~qi~~w~y~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~d~~~~ 94 (368)
T PRK14456 17 LQNIRNLRRQELTELLARLGEPAWRAAQLHQWLFSHRAL-SFEEMTTLSKPLRRKLAES-FAIQPPVTEKHDETMEGSPA 94 (368)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CHHHhccccHHHHHHHhcc-eecCCcceEEEEeeccCCCC
Confidence 357899999999999999999999999999999999999 9999999999999999999 99999999999998 5
Q ss_pred CCcEEEEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh----
Q 043340 81 DGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF---- 156 (327)
Q Consensus 81 dgt~K~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~---- 156 (327)
|||+||||+|+||..||||+||.+ .|.|+|+|+|+||||+|.||+++.+++.|+|+++||++|+..+.+.+
T Consensus 95 dgt~K~l~~l~dg~~iEtV~i~~~-----~~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~ 169 (368)
T PRK14456 95 GPTEKLLIKLPDGELVETVLIPGP-----ERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERN 169 (368)
T ss_pred CCeEEEEEEcCCCCEEEEEEEecC-----CceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 779999999999999999999965 38999999999999999999999999999999999999997654332
Q ss_pred -cCCcceEEEeeCCCCcCChhhHHHHHHHhhhc---cCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec----------
Q 043340 157 -KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD---VQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR---------- 222 (327)
Q Consensus 157 -~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~---~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS---------- 222 (327)
+.++++|+||||||||+|++++.++++.+++. ++++.++|+++|||+++.+++|++.+++++|+||
T Consensus 170 ~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~ 249 (368)
T PRK14456 170 RERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRE 249 (368)
T ss_pred ccCCccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHH
Confidence 24689999999999999999999999999752 5788899999999999999999999888889888
Q ss_pred ------------------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCc
Q 043340 223 ------------------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266 (327)
Q Consensus 223 ------------------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~ 266 (327)
|+|+||+++++++|++|+++++ ++||+|||||.++.+|++|+
T Consensus 250 ~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~--~~VnlIpyn~~~~~~~~~ps 327 (368)
T PRK14456 250 RLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFF--CKINLIDYNSIVNIKFEPVC 327 (368)
T ss_pred HhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCC--CeeEEeeeccCCCCCCCCCC
Confidence 9999999999999999999864 89999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCCCcccccccchhhhh
Q 043340 267 KKAVLAFAGALESHKITTSIRQTRGLDASAACGQLRNE 304 (327)
Q Consensus 267 ~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~ 304 (327)
++.+++|+++|+++|++|+||+++|.||+||||||+.+
T Consensus 328 ~e~i~~F~~~L~~~Gi~vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 328 SSTRERFRDRLLDAGLQVTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred HHHHHHHHHHHHHCCCcEEeeCCCCcchhhcCCcchhc
Confidence 99999999999999999999999999999999999864
No 15
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.8e-77 Score=574.64 Aligned_cols=284 Identities=35% Similarity=0.464 Sum_probs=265.8
Q ss_pred CCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEE
Q 043340 10 WPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIK 89 (327)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~ 89 (327)
++|+++||++++.++|+|+|||+|||+|+|++++. |++|+|||+++|++|++. |.+..++++..+.|.|||+||||+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~--~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~d~t~k~l~~ 78 (336)
T PRK14470 2 LHLSGQDSRALARPAGISLEDARRITGAVIGRGAP--LRSARNVRRSVLDEVDAL-ATPGELRLVERVDAKDGFRKYLFE 78 (336)
T ss_pred CCCCHHHHHHHHHHcCCCcHHHHHHHHHHHhCCCC--HHHhccCCHHHHHHHhcc-cccCCceEEEEEEcCCCcEEEEEE
Confidence 68999999999999999999999999999999986 999999999999999999 999999999999999999999999
Q ss_pred ecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC
Q 043340 90 LEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG 169 (327)
Q Consensus 90 l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G 169 (327)
|+||+.||||+||+.+ .|.|+|||+|+||||+|.||+++.+++.|+++++||++|+....+..+.++++|||||||
T Consensus 79 l~dg~~iE~V~ip~~~----~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmG 154 (336)
T PRK14470 79 LPDGLRVEAVRIPLFD----THHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQG 154 (336)
T ss_pred cCCCCEEEEEeccccC----CCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 9999999999999531 378999999999999999999999999999999999999988765444579999999999
Q ss_pred CCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec-------------------------
Q 043340 170 EPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------------- 222 (327)
Q Consensus 170 EPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------------------------- 222 (327)
|||+|++++.++++.+++ .++++.++|+|+|||+.|.+++|+..+.+++|++|
T Consensus 155 EPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il 234 (336)
T PRK14470 155 EPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELV 234 (336)
T ss_pred ccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHH
Confidence 999999999999999975 36788899999999999999999998777889998
Q ss_pred -------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHH--HhCC
Q 043340 223 -------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGAL--ESHK 281 (327)
Q Consensus 223 -------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L--~~~g 281 (327)
|+|+||+++++++|++++++++ ++||+|||||.++ +|++|+++++++|+++| +++|
T Consensus 235 ~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~--~~vnlI~~N~~~~-~~~~p~~~~i~~f~~~l~~~~~g 311 (336)
T PRK14470 235 EAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIP--VRLNPIAVNDATG-RYRPPDEDEWNAFRDALARELPG 311 (336)
T ss_pred HHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCC--CeEEEeccCCCCC-CccCCCHHHHHHHHHHHHHccCC
Confidence 9999999999999999999864 8999999999766 89999999999999999 5899
Q ss_pred CeEEEcCCCCcccccccchhhh
Q 043340 282 ITTSIRQTRGLDASAACGQLRN 303 (327)
Q Consensus 282 i~v~vR~~~G~di~aaCGqL~~ 303 (327)
+.|++|+++|+||+||||||+.
T Consensus 312 ~~~~~R~~~G~di~aaCGqL~~ 333 (336)
T PRK14470 312 TPVVRRYSGGQDEHAACGMLAS 333 (336)
T ss_pred eEEEEECCCCCChHhccCcccc
Confidence 9999999999999999999976
No 16
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.2e-77 Score=573.55 Aligned_cols=284 Identities=33% Similarity=0.544 Sum_probs=264.4
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHH-HHHHhcCCCCC--CCCCCCCCHHHHHHHHhcCCCCCCCceeeEEe-cCCCcEEEE
Q 043340 12 FLYPAAQVICFFFFTCPSRGRQRA-PWHVRAGASKT--RRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVT-AADGTVKLL 87 (327)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~ra~qi~-~~~~~~~~~~~--~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~-s~dgt~K~l 87 (327)
|+++||++++.++|+|+|||+||| +|+|++++. + |++|||||+++|++|++.+|.+..+++...+. |.|||+|||
T Consensus 1 ~~~~el~~~~~~~g~~~~ra~Qi~~~w~~~~~~~-~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~~~s~dgt~K~l 79 (344)
T PRK14464 1 MRIQDLRQRLRALGAKPCHEGRILRAWLQGLPLD-TRRQRAEDFLPLALREALPALEAELDGLARLRSEHPGEDGSARLL 79 (344)
T ss_pred CCHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCC-ccchhhhccCCHHHHHHHHhcCeeccCcceEEEEEecCCCcEEEE
Confidence 678999999999999999999999 599999999 9 69999999999999999745888899777776 579999999
Q ss_pred EEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee
Q 043340 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG 167 (327)
Q Consensus 88 ~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G 167 (327)
|+|+||+.||||+||. .|+|||||+||+++|.||++|.+++.||++++||++|+..+.+. ..+++|||||
T Consensus 80 ~~l~Dg~~iEtV~i~~--------~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~--~~i~nIVfmG 149 (344)
T PRK14464 80 VELADGQMVESVLLPR--------DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRR--RAVKKVVFMG 149 (344)
T ss_pred EEcCCCCEEEEEEecC--------CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhc--CCCCEEEEec
Confidence 9999999999999993 38999999999999999999999999999999999999987653 5799999999
Q ss_pred CCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec-------------------------
Q 043340 168 MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------------- 222 (327)
Q Consensus 168 ~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------------------------- 222 (327)
|||||+|+++++++++.+++..+++.++|+|||+|.++.+.+|+.+.+.++|++|
T Consensus 150 mGEPl~N~d~vl~ai~~l~~~~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~ 229 (344)
T PRK14464 150 MGEPAHNLDNVLEAIDLLGTEGGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELV 229 (344)
T ss_pred cCcccCCHHHHHHHHHHhhchhcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHH
Confidence 9999999999999999997657889999999999999999999987667777777
Q ss_pred --------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCC
Q 043340 223 --------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282 (327)
Q Consensus 223 --------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi 282 (327)
|+|+||+++++++|++++++++ ++||||||||+++..|.+|+++++++|+++|+++|+
T Consensus 230 ~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~--~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~~gi 307 (344)
T PRK14464 230 ELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKY--AVMNLIPYNSVDGDAYRRPSGERIVAMARYLHRRGV 307 (344)
T ss_pred HHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccc--cccceecCCccCCCCccCCCHHHHHHHHHHHHHCCc
Confidence 9999999999999999999864 899999999999999999999999999999999999
Q ss_pred eEEEcCCCCcccccccchhhhhhccC
Q 043340 283 TTSIRQTRGLDASAACGQLRNEFQKS 308 (327)
Q Consensus 283 ~v~vR~~~G~di~aaCGqL~~~~~~~ 308 (327)
.|++|+++|+||+||||||+.+.+|.
T Consensus 308 ~~tiR~~~G~di~aACGqL~~~~~~~ 333 (344)
T PRK14464 308 LTKVRNSAGQDVDGGCGQLRARAAKA 333 (344)
T ss_pred eEEEECCCCCchhhcCcchhhhhccc
Confidence 99999999999999999999887764
No 17
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=1.1e-76 Score=572.75 Aligned_cols=287 Identities=32% Similarity=0.457 Sum_probs=263.0
Q ss_pred CCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCC--CCCCCceeeEEecCCCcEEEEE
Q 043340 11 PFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGW--TVGRLPIFRTVTAADGTVKLLI 88 (327)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~--~~~~~~~~~~~~s~dgt~K~l~ 88 (327)
.++++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|++. | .+..+++...+.| |||+||||
T Consensus 4 ~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~~~s-dgt~K~l~ 80 (347)
T PRK14453 4 KTKYGKMKQILSNLKLPDYRYEQITKAIFKQRID-NFEDMHILPKALRESLINE-FGKNVLSVIPVFEQDS-KQVTKVLF 80 (347)
T ss_pred cCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCC-CHHHhccCCHHHHHHHHHH-HhhccCCceeEEEEec-CCeEEEEE
Confidence 4789999999999999999999999999999999 9999999999999999999 8 6888999988888 89999999
Q ss_pred EecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC
Q 043340 89 KLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM 168 (327)
Q Consensus 89 ~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~ 168 (327)
+|+||..||||+||++ . .|.|+|||||+||||+|.||+++.+++.|+||++||++|+..+... +.++++||||||
T Consensus 81 ~l~dg~~iE~V~i~~~--~--~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~~-~~~i~~IvfmGm 155 (347)
T PRK14453 81 ELTDGERIEAVGLKYK--Q--GWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYLN-GHRLDSISFMGM 155 (347)
T ss_pred EcCCCCEEEEEEEeec--C--CceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHhc-CCCcceEEEeec
Confidence 9999999999999976 1 2589999999999999999999999999999999999999876432 345999999999
Q ss_pred CCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec------------------------
Q 043340 169 GEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------------ 222 (327)
Q Consensus 169 GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------------------------ 222 (327)
||||+|+ ++.++++.+++ .+|++.|+|+|+|+|++|.+++|.+....++|++|
T Consensus 156 GEPLln~-~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~l 234 (347)
T PRK14453 156 GEALANP-ELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEV 234 (347)
T ss_pred CCccCCH-HHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHH
Confidence 9999995 69999999976 47889999999999999999999887667888887
Q ss_pred ---------------------ccCCCCcHHHHHHHHHHHHhcC---CcceEEEEeccCCCCC--CCCCCcHHHHHHHHHH
Q 043340 223 ---------------------SAGVNDQVEHAVELAELLHEWG---RGHHVNLIPFNPIEGS--DYQRPYKKAVLAFAGA 276 (327)
Q Consensus 223 ---------------------I~GvND~~e~a~~L~~~l~~l~---~~~~vnLIp~np~~~~--~~~~p~~e~i~~f~~~ 276 (327)
|||+||+++++++|++|+++++ ..++||||||||.++. +|++|+++++++|+++
T Consensus 235 l~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~ 314 (347)
T PRK14453 235 MKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCST 314 (347)
T ss_pred HHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHH
Confidence 9999999999999999999862 2479999999999765 4999999999999999
Q ss_pred HHhCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 277 LESHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 277 L~~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
|+++|+.|++|+++|+||+||||||+.+..
T Consensus 315 L~~~Gi~vtiR~~~G~di~aaCGqL~~~~~ 344 (347)
T PRK14453 315 LKSAGISVTVRTQFGSDISAACGQLYGNYE 344 (347)
T ss_pred HHHCCCcEEEeCCCCCchhhccccchhhhc
Confidence 999999999999999999999999987654
No 18
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.3e-76 Score=569.65 Aligned_cols=290 Identities=38% Similarity=0.567 Sum_probs=271.5
Q ss_pred ccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecC-CCcEE
Q 043340 7 APAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAA-DGTVK 85 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~-dgt~K 85 (327)
+++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|+|||+++|++|++. |.+..+++...+.|. |||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~-~~~~~~~~~~~~~s~~d~t~k 79 (343)
T PRK14469 2 KNILDLSYEELVSEITELGLEKYRADQILDWIYKKKVF-NFDEMTNLSKDHRALLSEH-FSIPFPKLLDKQVSKIDGTTK 79 (343)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCC-CHHHhccccHHHHHHHhhc-cccCCceEEEEEeccCCCeEE
Confidence 57999999999999999999999999999999999999 9999999999999999999 999999999999995 99999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEE
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVF 165 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf 165 (327)
|||+|.||..||||+||++ .|.|+|||+|+||||+|.||+++..++.|+++++||++|+.........++++|+|
T Consensus 80 ~l~~~~dg~~ie~v~~~~~-----~~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf 154 (343)
T PRK14469 80 FLWELEDGNTIESVMLFHP-----DRITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEKKKVGNVVY 154 (343)
T ss_pred EEEEcCCCCEEEEEEEecC-----CCeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhccCCcCeEEE
Confidence 9999999999999999986 38999999999999999999999999999999999999998776554457999999
Q ss_pred eeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec---------------------
Q 043340 166 MGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------- 222 (327)
Q Consensus 166 ~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS--------------------- 222 (327)
|||||||+|+++|.++++.+++ ..+++.++|+++|||+++.+++|++.+++++|+||
T Consensus 155 ~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l 234 (343)
T PRK14469 155 MGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSI 234 (343)
T ss_pred EccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCH
Confidence 9999999999999999999974 25777789999999999999999998888788888
Q ss_pred ------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 043340 223 ------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 ------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~ 278 (327)
|+|+||+.+++++|++++++++ .+||+|||||..+ .+++|+++++++|+++|+
T Consensus 235 ~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~--~~VnLIpynp~~~-~~~~ps~e~l~~f~~~l~ 311 (343)
T PRK14469 235 EEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLK--VFVNLIPVNPTVP-GLEKPSRERIERFKEILL 311 (343)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccC--cEEEEEecCCCCc-cCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999865 7899999999876 789999999999999999
Q ss_pred hCCCeEEEcCCCCcccccccchhhhhhc
Q 043340 279 SHKITTSIRQTRGLDASAACGQLRNEFQ 306 (327)
Q Consensus 279 ~~gi~v~vR~~~G~di~aaCGqL~~~~~ 306 (327)
++|+.+++|.++|.||+||||||+.+..
T Consensus 312 ~~gi~vtvr~~~g~di~aaCGqL~~~~~ 339 (343)
T PRK14469 312 KNGIEAEIRREKGSDIEAACGQLRRRNL 339 (343)
T ss_pred HCCCeEEEeCCCCcchhhcCccchhhhh
Confidence 9999999999999999999999987654
No 19
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4e-76 Score=569.85 Aligned_cols=292 Identities=36% Similarity=0.528 Sum_probs=272.8
Q ss_pred cccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEE
Q 043340 6 LAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVK 85 (327)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 85 (327)
..++++|+++||++++.++|+|+|||+|||+|+|++++. +|++|||||+++|++|+++ |.+..+++...+.|.|||+|
T Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~dgt~k 81 (349)
T PRK14463 4 KTDIKNLTLQELEAFLAGQGKERFRAKQIFKWLYQRDAR-SFAEMTNLSKDLRAELEET-ARISNLEPEAVEVSRDGTRK 81 (349)
T ss_pred ccccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHhCCC-CHHHhcccCHHHHHhhcCC-eeecCcceeEEEEcCCCcEE
Confidence 467999999999999999999999999999999999999 9999999999999999999 99999999999999999999
Q ss_pred EEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEE
Q 043340 86 LLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVF 165 (327)
Q Consensus 86 ~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf 165 (327)
|||+|+||+.||||+||++ .|.|+|||+|+|||++|.||+++..++.|+++++||++|+..+.+. .++++|+|
T Consensus 82 ~l~~~~dg~~iE~V~~~~~-----~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~--~~i~~Ivf 154 (349)
T PRK14463 82 YLFRLEDGNAVESVLIPDE-----DRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRD--VPVRNIVF 154 (349)
T ss_pred EEEEcCCCCeEEEEEEEec-----CCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhc--CCccEEEE
Confidence 9999999999999999976 4799999999999999999999988889999999999999876542 36899999
Q ss_pred eeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec---------------------
Q 043340 166 MGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------------- 222 (327)
Q Consensus 166 ~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS--------------------- 222 (327)
|||||||+|++++.++++.+++ .+++|.++|+|+|||+++.+.+|+... .++|++|
T Consensus 155 mG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~-~~~LaiSL~a~~~e~r~~I~pink~~~l 233 (349)
T PRK14463 155 MGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREV-TVNLAVSLNATTDEVRDRIMPVNRRYPL 233 (349)
T ss_pred ecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhcc-CeEEEEeCCCCCHHHHHHhcCcccCCCH
Confidence 9999999999999999999964 477899999999999999999998764 5778777
Q ss_pred ------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHH
Q 043340 223 ------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 ------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~ 278 (327)
|+|+||+++++++|++++++++ ++||||||||.++..|++|+++++++|+++|+
T Consensus 234 ~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~--~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 234 AELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIP--SKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccC--ceEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999975 79999999999999999999999999999999
Q ss_pred hCCCeEEEcCCCCcccccccchhhhhhccCc
Q 043340 279 SHKITTSIRQTRGLDASAACGQLRNEFQKSP 309 (327)
Q Consensus 279 ~~gi~v~vR~~~G~di~aaCGqL~~~~~~~~ 309 (327)
++|++|++|+++|.||+||||||+.+..+.+
T Consensus 312 ~~gi~v~vR~~~G~di~aaCGqL~~~~~~~~ 342 (349)
T PRK14463 312 DKHVTVITRSSRGSDISAACGQLKGKLDKAP 342 (349)
T ss_pred HCCceEEEeCCCCcchhhccCcccccccCCC
Confidence 9999999999999999999999988766543
No 20
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6e-75 Score=560.70 Aligned_cols=282 Identities=41% Similarity=0.622 Sum_probs=263.7
Q ss_pred ccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEE
Q 043340 7 APAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~ 86 (327)
.++.+++++|| |+|+|||+|||+|+|++++. +|++|+|||+++|++|+++ |.+..++++..+.|.|||+||
T Consensus 2 ~~~~~~~~~~~-------~~~~~r~~qi~~~~~~~~~~-~~~~m~~l~~~~r~~l~~~-~~~~~~~~~~~~~s~dgt~k~ 72 (343)
T PRK14468 2 QPLLELHPDAL-------PGEGYRRAQLAEWLYAQGAR-TFDAMTNLPKALRAELARE-YRLSPFREVETFRSQDGSVKY 72 (343)
T ss_pred cccccCCHHHc-------CCCchHHHHHHHHHHhcCCC-CHHHhccccHHHHHHHhhc-cccCCceEEEEEEcCCCcEEE
Confidence 57899999998 99999999999999999999 9999999999999999999 999999999999999999999
Q ss_pred EEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc---CCcceE
Q 043340 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNV 163 (327)
Q Consensus 87 l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~---~~v~~I 163 (327)
||+++||+.||||+||+. .|.|+|||+|+|||++|.||+++.+++.|++|++||++|+.......+ .++++|
T Consensus 73 l~~~~dg~~iE~V~i~~~-----~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~V 147 (343)
T PRK14468 73 LFTLLDGKQTEAVYMPYL-----DRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNV 147 (343)
T ss_pred EEECCCCCEEEEEEEEec-----CCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEE
Confidence 999999999999999976 479999999999999999999999999999999999999987654321 358999
Q ss_pred EEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec-------------------
Q 043340 164 VFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR------------------- 222 (327)
Q Consensus 164 vf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS------------------- 222 (327)
|||||||||+|++++.++++.+.+ .++++.++|++||||+.+.+++|++.+++++|++|
T Consensus 148 vf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~ 227 (343)
T PRK14468 148 VLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRY 227 (343)
T ss_pred EEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccC
Confidence 999999999999999999998853 36788899999999999999999998877788888
Q ss_pred --------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHH
Q 043340 223 --------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276 (327)
Q Consensus 223 --------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~ 276 (327)
|+|+||+++++++|+++++++. ++||||||||.++..|++|+++++++|+++
T Consensus 228 ~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~ 305 (343)
T PRK14468 228 SIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLV--SHVNLIPFNPWEGSPFQSSPRAQILAFADV 305 (343)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCC--cEEEEEcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999964 799999999998889999999999999999
Q ss_pred HHhCCCeEEEcCCCCcccccccchhhhh
Q 043340 277 LESHKITTSIRQTRGLDASAACGQLRNE 304 (327)
Q Consensus 277 L~~~gi~v~vR~~~G~di~aaCGqL~~~ 304 (327)
|.++|+.|++|+++|.||+||||||+.+
T Consensus 306 L~~~Gi~vtiR~~~g~di~aaCGqL~~~ 333 (343)
T PRK14468 306 LERRGVPVSVRWSRGRDVGAACGQLALK 333 (343)
T ss_pred HHHCCCeEEEeCCCCcchhhcCCccccC
Confidence 9999999999999999999999999764
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.93 E-value=3.6e-25 Score=204.45 Aligned_cols=177 Identities=21% Similarity=0.373 Sum_probs=136.1
Q ss_pred EEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc
Q 043340 96 IETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172 (327)
Q Consensus 96 iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl 172 (327)
+|....- ||+| .|.+ .+..|||++|.||+++.. ...+.+|++|+++++......+.....+|+|+| ||||
T Consensus 10 ~~~~~~~--dg~g-~~~~---~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG-GEPl 82 (246)
T PRK11145 10 FESCGTV--DGPG-IRFI---TFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG-GEAI 82 (246)
T ss_pred EEEEeeE--CCCC-eEEE---EEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC-ccHh
Confidence 5555543 4677 5554 344899999999998643 345679999999998876543323356899999 9999
Q ss_pred CChhhHHHHHHHhhhccCCCCccEEEEcCCcH----HHHHHHHhcCCCcceeec--------------------------
Q 043340 173 LNLKSVLEAHRCLNKDVQIGQRMITISTVGVP----NTIKKLASYKLQSTLAIR-------------------------- 222 (327)
Q Consensus 173 ln~~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i~~L~~~~~~v~lavS-------------------------- 222 (327)
+|++.+.++++.+++ .|+ +++++|||+. +.++++.+. .+ .+.+|
T Consensus 83 l~~~~~~~l~~~~k~-~g~---~i~l~TNG~~~~~~~~~~~ll~~-~d-~v~islk~~~~e~~~~~~g~~~~~~l~~i~~ 156 (246)
T PRK11145 83 LQAEFVRDWFRACKK-EGI---HTCLDTNGFVRRYDPVIDELLDV-TD-LVMLDLKQMNDEIHQNLVGVSNHRTLEFARY 156 (246)
T ss_pred cCHHHHHHHHHHHHH-cCC---CEEEECCCCCCcchHHHHHHHHh-CC-EEEECCCcCChhhcccccCCChHHHHHHHHH
Confidence 999988899999974 688 8999999984 235555432 11 12222
Q ss_pred --------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC------------CCCCCcHHHHHHHHHH
Q 043340 223 --------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS------------DYQRPYKKAVLAFAGA 276 (327)
Q Consensus 223 --------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~------------~~~~p~~e~i~~f~~~ 276 (327)
+||+||++++++++++|+++++...+++++|||+.+.. .+++|+.+++++|+++
T Consensus 157 l~~~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 236 (246)
T PRK11145 157 LAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGI 236 (246)
T ss_pred HHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHH
Confidence 99999999999999999998754468999999987642 4678999999999999
Q ss_pred HHhCCCeEE
Q 043340 277 LESHKITTS 285 (327)
Q Consensus 277 L~~~gi~v~ 285 (327)
++++|++++
T Consensus 237 ~~~~g~~~~ 245 (246)
T PRK11145 237 LEQYGHKVM 245 (246)
T ss_pred HHHcCCccc
Confidence 999998864
No 22
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.87 E-value=2.8e-21 Score=192.94 Aligned_cols=160 Identities=22% Similarity=0.474 Sum_probs=126.5
Q ss_pred eeEEEEEecCCCCCCCCCCCCCC-------CC-CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGK-------GG-FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAH 182 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~-------~~-~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i 182 (327)
|.. +..+.|||++|.||.+.. .+ ..+.||++|+++++......+ ..++.|+|+|+||||+|++++.+.+
T Consensus 25 r~~--~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~-~~~~~V~iaG~GEPLl~~e~~~~~l 101 (442)
T TIGR01290 25 RMH--LAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEI-PQLSVVGIAGPGDPLANIGKTFQTL 101 (442)
T ss_pred EEE--EecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhc-CCCCEEEEecCCCcccCccccHHHH
Confidence 554 555689999999999842 23 247899999999998876543 3578999999999999999999999
Q ss_pred HHhhhcc-CCCCccEEEEcCCc--HHHHHHHHhcCCCcceeec-------------------------------------
Q 043340 183 RCLNKDV-QIGQRMITISTVGV--PNTIKKLASYKLQSTLAIR------------------------------------- 222 (327)
Q Consensus 183 ~~l~~~~-gi~~r~itisTnG~--~~~i~~L~~~~~~v~lavS------------------------------------- 222 (327)
+.+++.. |+ +++|+|||+ .+.+++|.+.+++ .+.||
T Consensus 102 ~~~~~~~~~i---~i~lsTNG~~l~e~i~~L~~~gvd-~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l 177 (442)
T TIGR01290 102 ELVARQLPDV---KLCLSTNGLMLPEHVDRLVDLGVG-HVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQL 177 (442)
T ss_pred HHHHHhcCCC---eEEEECCCCCCHHHHHHHHHCCCC-eEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHH
Confidence 9997653 67 899999998 3467888765421 11111
Q ss_pred -------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC--CCCC-----CCCcHHHHHHHHHH
Q 043340 223 -------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE--GSDY-----QRPYKKAVLAFAGA 276 (327)
Q Consensus 223 -------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~--~~~~-----~~p~~e~i~~f~~~ 276 (327)
|||+|| +++.++++++++++. ..+|++||+|.+ +..| ++|+.+++++|++.
T Consensus 178 ~~l~~l~~~G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg~-~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~ 254 (442)
T TIGR01290 178 EGLEKLTERGILVKVNSVLIPGIND--EHLVEVSKQVKELGA-FLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDR 254 (442)
T ss_pred HHHHHHHhCCCeEEEEEEeeCCcCH--HHHHHHHHHHHhCCC-cEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHH
Confidence 999999 689999999999863 569999999876 5444 88999999999999
Q ss_pred HHhC
Q 043340 277 LESH 280 (327)
Q Consensus 277 L~~~ 280 (327)
+++.
T Consensus 255 ~~~~ 258 (442)
T TIGR01290 255 LEMG 258 (442)
T ss_pred HHhh
Confidence 8763
No 23
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.87 E-value=1.2e-20 Score=172.69 Aligned_cols=174 Identities=23% Similarity=0.413 Sum_probs=130.7
Q ss_pred CeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC
Q 043340 94 RLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE 170 (327)
Q Consensus 94 ~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE 170 (327)
+.+|.+.+. +|+| ..+++.+ .|||++|.||+++.. ...+.++++++++.+......+......|+|+| ||
T Consensus 3 ~~~~~~~~~--~g~g---~~~~v~~-~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G-GE 75 (235)
T TIGR02493 3 HSTESMGTV--DGPG---IRFVVFM-QGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG-GE 75 (235)
T ss_pred eEEEecccc--CCCC---ceEEEEE-CCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC-cc
Confidence 458888877 4566 3334444 699999999998633 223579999999988876554322335899999 99
Q ss_pred CcCChhhHHHHHHHhhhccCCCCccEEEEcCCc----HHHHHHHHhcCCCcceeec------------------------
Q 043340 171 PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV----PNTIKKLASYKLQSTLAIR------------------------ 222 (327)
Q Consensus 171 Plln~~~v~~~i~~l~~~~gi~~r~itisTnG~----~~~i~~L~~~~~~v~lavS------------------------ 222 (327)
||++++.+.++++.+++ .|+ ++++.|||+ .+.+.++.+. .+ .+.+|
T Consensus 76 Pll~~~~~~~li~~~~~-~g~---~~~i~TNG~~~~~~~~~~~ll~~-~d-~v~isl~~~~~~~~~~~~g~~~~~v~~~i 149 (235)
T TIGR02493 76 PLLQPEFLSELFKACKE-LGI---HTCLDTSGFLGGCTEAADELLEY-TD-LVLLDIKHFNPEKYKKLTGVSLQPTLDFA 149 (235)
T ss_pred cccCHHHHHHHHHHHHH-CCC---CEEEEcCCCCCccHHHHHHHHHh-CC-EEEEeCCCCCHHHHHHHHCCCcHHHHHHH
Confidence 99998888899999964 577 799999995 3445555543 11 12222
Q ss_pred ----------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC------------CCCCCCCcHHHHHHHH
Q 043340 223 ----------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE------------GSDYQRPYKKAVLAFA 274 (327)
Q Consensus 223 ----------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~------------~~~~~~p~~e~i~~f~ 274 (327)
++|+||+.++++++++|++.++....++++||+|.+ ..++++|+.+++++++
T Consensus 150 ~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (235)
T TIGR02493 150 KYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAA 229 (235)
T ss_pred HHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHH
Confidence 689999999999999999998755688999999854 2356889999999999
Q ss_pred HHHHhC
Q 043340 275 GALESH 280 (327)
Q Consensus 275 ~~L~~~ 280 (327)
++++++
T Consensus 230 ~~~~~~ 235 (235)
T TIGR02493 230 EIFKEY 235 (235)
T ss_pred HHHhhC
Confidence 998764
No 24
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.8e-21 Score=178.06 Aligned_cols=163 Identities=23% Similarity=0.360 Sum_probs=125.3
Q ss_pred EEecCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCc
Q 043340 116 VSSQVGCPLRCSFCATGKGGF-SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQR 194 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~~~~~-~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r 194 (327)
+.+..|||++|.||+|+.... .+..+.+++..+++...+.....+++|+|+| |||+++++++.++++.+++ .|+
T Consensus 39 ~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SG-GEP~~q~e~~~~~~~~ake-~Gl--- 113 (260)
T COG1180 39 SVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSG-GEPTLQAEFALDLLRAAKE-RGL--- 113 (260)
T ss_pred EEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEEC-CcchhhHHHHHHHHHHHHH-CCC---
Confidence 334589999999999987654 3566666666555554444445789999999 9999999999999999975 499
Q ss_pred cEEEEcCCcHH--HHHHHHhcC-----------------------------------CCcceeec---ccCCCCcHHHHH
Q 043340 195 MITISTVGVPN--TIKKLASYK-----------------------------------LQSTLAIR---SAGVNDQVEHAV 234 (327)
Q Consensus 195 ~itisTnG~~~--~i~~L~~~~-----------------------------------~~v~lavS---I~GvND~~e~a~ 234 (327)
++++.|||+.+ ..++|.+.. .++++.++ |||+||++++++
T Consensus 114 ~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~i~ 193 (260)
T COG1180 114 HVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADNEPVLENLELLADLGVHVEIRTLVIPGYNDDEEEIR 193 (260)
T ss_pred cEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCcHHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHHHH
Confidence 99999999852 345555431 11233333 999999999999
Q ss_pred HHHHHHHhcCCcceEEEEeccCCCCCCCC-CCcHHHHHHHHHHHHhCCCe
Q 043340 235 ELAELLHEWGRGHHVNLIPFNPIEGSDYQ-RPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 235 ~L~~~l~~l~~~~~vnLIp~np~~~~~~~-~p~~e~i~~f~~~L~~~gi~ 283 (327)
++++|++++.....+++.||+|.....+. .+..+.++++.+..++.+..
T Consensus 194 ~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~~ 243 (260)
T COG1180 194 ELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAKEEGLK 243 (260)
T ss_pred HHHHHHHhcCCcccEEEeccccCccccccCCCcHHHHHHhHhhhHHHHHH
Confidence 99999998766789999999998877664 45667788888888776554
No 25
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.83 E-value=1.9e-19 Score=173.14 Aligned_cols=203 Identities=17% Similarity=0.249 Sum_probs=129.7
Q ss_pred EecCCCcEEEEEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 043340 77 VTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF 156 (327)
Q Consensus 77 ~~s~dgt~K~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~ 156 (327)
..+.|||.|+++...|+..||+|+++|. .| ++|+ +|.|||++|+||++......++....+.++++....+.
T Consensus 68 ~~~~~~~~~d~~~~~~~~~v~gl~hkY~-----~r-~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~- 139 (321)
T TIGR03821 68 FEQHPGYSADPLDEQDANPVPGLLHKYH-----GR-VLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQ- 139 (321)
T ss_pred hccCCCcCCCchhhcCCCcCCeeeeecC-----CE-EEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHh-
Confidence 3457899999999999999999999987 35 5666 78999999999999766555543333445554443332
Q ss_pred cCCcceEEEeeCCCCcCChhh-HHHHHHHhhhccCCCCccEEEEc-------CCcHHH-HHHHHhcCCCcceeec-----
Q 043340 157 KHRVTNVVFMGMGEPMLNLKS-VLEAHRCLNKDVQIGQRMITIST-------VGVPNT-IKKLASYKLQSTLAIR----- 222 (327)
Q Consensus 157 ~~~v~~Ivf~G~GEPlln~~~-v~~~i~~l~~~~gi~~r~itisT-------nG~~~~-i~~L~~~~~~v~lavS----- 222 (327)
..++++|+||| ||||++.+. +.++++.+...-.+ +.+.+.| |-+.+. ++.|...+....+.+|
T Consensus 140 ~~~i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~--~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~ 216 (321)
T TIGR03821 140 HPEINEVILSG-GDPLMAKDHRLDWLLNLLEQIPHL--KRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN 216 (321)
T ss_pred cCCCCEEEEeC-cccccCCchHHHHHHHHHHhCCCC--cEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH
Confidence 24789999999 999999765 55666555421111 1233333 322232 4444444332222122
Q ss_pred --------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHH
Q 043340 223 --------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276 (327)
Q Consensus 223 --------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~ 276 (327)
++|+||+.+++.+|.+.+..++. ..+.+..+.|.++...-..+.++..++.+.
T Consensus 217 Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv-~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~ 295 (321)
T TIGR03821 217 EIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGV-LPYYLHLLDKVQGAAHFDVDDERARALMAE 295 (321)
T ss_pred hCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCC-eeCcccccCCCCCcccccCCHHHHHHHHHH
Confidence 89999999999999999987652 344555555666543233444444444334
Q ss_pred H----HhCCCeEEEcCCCC
Q 043340 277 L----ESHKITTSIRQTRG 291 (327)
Q Consensus 277 L----~~~gi~v~vR~~~G 291 (327)
+ ..+.++..|+.-+|
T Consensus 296 l~~~~sG~~~P~~v~d~pg 314 (321)
T TIGR03821 296 LLARLPGYLVPRLVREIPG 314 (321)
T ss_pred HHHhCCCCccceeEEEcCC
Confidence 3 44567778886555
No 26
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.81 E-value=2.2e-19 Score=170.10 Aligned_cols=136 Identities=21% Similarity=0.391 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQ 216 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~ 216 (327)
.++.+++++.+......+.....+|+|+| ||||++++.+.++++.+++ .|+ ++++.|||+. +.+.++.+. .+
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sG-GEPll~~~~l~~l~~~~k~-~g~---~~~i~TnG~~~~~~~~~ll~~-~d 178 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSG-GEPLLQPEFALALLQACHE-RGI---HTAVETSGFTPWETIEKVLPY-VD 178 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeC-cchhchHHHHHHHHHHHHH-cCC---cEeeeCCCCCCHHHHHHHHhh-CC
Confidence 45778888777665443333467999999 9999998888899999964 588 8999999974 345555543 11
Q ss_pred cceeec----------------------------------------ccCCCCcHHHHHHHHHHHHhcCC-cceEEEEecc
Q 043340 217 STLAIR----------------------------------------SAGVNDQVEHAVELAELLHEWGR-GHHVNLIPFN 255 (327)
Q Consensus 217 v~lavS----------------------------------------I~GvND~~e~a~~L~~~l~~l~~-~~~vnLIp~n 255 (327)
.+.+| ++|+||+.+++++++++++.++. ...++++||+
T Consensus 179 -~~~isl~~~~~~~~~~~~g~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 179 -LFLFDIKHLDDERHKEVTGVDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred -EEEEeeccCChHHHHHHhCCChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 11111 78999999999999999998753 3689999999
Q ss_pred CCCCC------------CCCCCcHHHHHHHHHHHHhCC
Q 043340 256 PIEGS------------DYQRPYKKAVLAFAGALESHK 281 (327)
Q Consensus 256 p~~~~------------~~~~p~~e~i~~f~~~L~~~g 281 (327)
|.+.. .+++|+++++++|++.+++.|
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 258 RLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred chhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 97643 245799999999999998765
No 27
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.80 E-value=1.6e-18 Score=166.80 Aligned_cols=169 Identities=23% Similarity=0.281 Sum_probs=124.6
Q ss_pred CCCCceeEEEEEecCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHH
Q 043340 106 EKGPMRLTACVSSQVGCPLRCSFCATGK----GGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEA 181 (327)
Q Consensus 106 ~~g~~r~tlcVssq~GCnl~C~fC~t~~----~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~ 181 (327)
.+|..-..++++.+.+||++|.||+.+. ....+.++++|+.+.+....+ .++..|.|+| ||||++ +.+.++
T Consensus 11 ~~~r~~~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~---~gi~~I~~tG-GEPll~-~~l~~l 85 (331)
T PRK00164 11 RFGRKFTYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVA---LGVRKVRLTG-GEPLLR-KDLEDI 85 (331)
T ss_pred CCCCccCeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHH---CCCCEEEEEC-CCCcCc-cCHHHH
Confidence 4553445889999999999999999865 234578999999988866544 3689999999 999999 458899
Q ss_pred HHHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec-------------------------------------
Q 043340 182 HRCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR------------------------------------- 222 (327)
Q Consensus 182 i~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS------------------------------------- 222 (327)
++.+++..++ .+++++|||+. +.+++|.+.++. .+.||
T Consensus 86 i~~i~~~~~~--~~i~itTNG~ll~~~~~~L~~agl~-~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~ 162 (331)
T PRK00164 86 IAALAALPGI--RDLALTTNGYLLARRAAALKDAGLD-RVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVK 162 (331)
T ss_pred HHHHHhcCCC--ceEEEEcCchhHHHHHHHHHHcCCC-EEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEE
Confidence 9988643233 47999999973 457777776542 33333
Q ss_pred -----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-CCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 223 -----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-DYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 223 -----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
++|+|+ +++.++++++++++ ..+++|+|+|.+.. .|..+.....+++.+.|++.|+.++.
T Consensus 163 i~~vv~~g~n~--~ei~~l~~~~~~~g--v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 163 VNAVLMKGVND--DEIPDLLEWAKDRG--IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred EEEEEECCCCH--HHHHHHHHHHHhCC--CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 578887 58999999999876 68999999998653 34444445566777777776554433
No 28
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.79 E-value=1.6e-18 Score=157.58 Aligned_cols=144 Identities=17% Similarity=0.234 Sum_probs=117.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH--HHHHHHhcC
Q 043340 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN--TIKKLASYK 214 (327)
Q Consensus 137 ~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~--~i~~L~~~~ 214 (327)
.+.+|++|+++++.....++...-.+|+|+| |||+++++++.++++.+++ .|+ +++|.|||+.+ .++++.+.-
T Consensus 16 g~~~t~eel~~~~~~~~~f~~~sggGVt~SG-GEPllq~~fl~~l~~~~k~-~gi---~~~leTnG~~~~~~~~~l~~~~ 90 (213)
T PRK10076 16 GRDITLDALEREVMKDDIFFRTSGGGVTLSG-GEVLMQAEFATRFLQRLRL-WGV---SCAIETAGDAPASKLLPLAKLC 90 (213)
T ss_pred CcccCHHHHHHHHHhhhHhhcCCCCEEEEeC-chHHcCHHHHHHHHHHHHH-cCC---CEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999988776654567999999 9999999999999999964 699 99999999854 355555430
Q ss_pred -----------------------------------CCcceeec---ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccC
Q 043340 215 -----------------------------------LQSTLAIR---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP 256 (327)
Q Consensus 215 -----------------------------------~~v~lavS---I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np 256 (327)
.++.+.+. |||+||++++++++++|+++++. ..++|+||||
T Consensus 91 D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~-~~~~llpyh~ 169 (213)
T PRK10076 91 DEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGI-KQIHLLPFHQ 169 (213)
T ss_pred CEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCC-ceEEEecCCc
Confidence 01122222 99999999999999999999863 5899999999
Q ss_pred CCC------------CCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 257 IEG------------SDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 257 ~~~------------~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
.+. ...++|+++.++++.+++++.|+.+++
T Consensus 170 ~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 170 YGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred cchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 643 234678999999999999999999876
No 29
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.73 E-value=1.3e-16 Score=153.54 Aligned_cols=211 Identities=19% Similarity=0.190 Sum_probs=138.9
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEecCCCeEEEEeeccCCCCCCceeEEEE--Ee-cCCCCCC
Q 043340 49 RPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACV--SS-QVGCPLR 125 (327)
Q Consensus 49 ~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcV--ss-q~GCnl~ 125 (327)
.+..+++..++.|..+||.+-. .-..+|...=+.....=+-....+. .+| ...--|+ +. ..|||++
T Consensus 3 ~~~~~~~~~~~~~~~~~y~~~~---------~h~~vk~c~w~~~~~~~~~~cyk~~-fyg-i~s~~c~q~~P~~~~C~~r 71 (322)
T PRK13762 3 LRIMIPSEIAKILRKQGYHIVG---------RHSAVKLCHWTKKALKGGRSCYKSK-FYG-IESHRCVQMTPVVAWCNQR 71 (322)
T ss_pred cccccCHHHHHHHHhCCCEEec---------cccceeechhhHHHhcCCCcccccc-ccc-ccchheeccCchhHHHhcc
Confidence 3456789999999998877432 1112333222211000000111110 122 1111222 22 3569999
Q ss_pred CCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHH-h----c------------CCcceEEEeeCCCCcCChhhHHHH
Q 043340 126 CSFCATGKGG-------FSRNLSSHEIVGQVLAIEEI-F----K------------HRVTNVVFMGMGEPMLNLKSVLEA 181 (327)
Q Consensus 126 C~fC~t~~~~-------~~r~lt~~EIv~qv~~~~~~-~----~------------~~v~~Ivf~G~GEPlln~~~v~~~ 181 (327)
|.||+++... ..+..+++||++++...... + + ...+++.|+|.||||++ +.+.++
T Consensus 72 C~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~-p~l~el 150 (322)
T PRK13762 72 CLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLY-PYLPEL 150 (322)
T ss_pred CceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccch-hhHHHH
Confidence 9999996432 24578899999999876332 1 1 12568999988999998 479999
Q ss_pred HHHhhhccCCCCccEEEEcCCcHH-HHHHHHhcCCCcceeec--------------------------------------
Q 043340 182 HRCLNKDVQIGQRMITISTVGVPN-TIKKLASYKLQSTLAIR-------------------------------------- 222 (327)
Q Consensus 182 i~~l~~~~gi~~r~itisTnG~~~-~i~~L~~~~~~v~lavS-------------------------------------- 222 (327)
++.+++ .|+ ++.|.|||+.+ .+++| ..++ ..+.||
T Consensus 151 i~~~k~-~Gi---~~~L~TNG~~~e~l~~L-~~~~-d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~~~ 224 (322)
T PRK13762 151 IEEFHK-RGF---TTFLVTNGTRPDVLEKL-EEEP-TQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPSKKTRT 224 (322)
T ss_pred HHHHHH-cCC---CEEEECCCCCHHHHHHH-HhcC-CEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCCCE
Confidence 999974 588 89999999865 46666 3222 122222
Q ss_pred ------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC-----CCCcHHHHHHHHHHHHhC
Q 043340 223 ------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-----QRPYKKAVLAFAGALESH 280 (327)
Q Consensus 223 ------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~-----~~p~~e~i~~f~~~L~~~ 280 (327)
++|+||++++ +++++++.++ ...|.+.||++.+...+ ..|+.+++++|.+.+.++
T Consensus 225 ~ir~tlv~g~Nd~e~~--~~a~l~~~~~-~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~ 290 (322)
T PRK13762 225 VIRITLVKGYNMHDPE--GFAKLIERAN-PDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEY 290 (322)
T ss_pred EEEEEEECCcCccHHH--HHHHHHHHcC-CCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHh
Confidence 8999998755 8999999875 47899999999876544 348899999999999887
No 30
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.71 E-value=3.6e-16 Score=153.30 Aligned_cols=155 Identities=24% Similarity=0.386 Sum_probs=114.1
Q ss_pred CCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCC-C---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC
Q 043340 93 NRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG-G---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM 168 (327)
Q Consensus 93 g~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~-~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~ 168 (327)
-+.|++.+.. .+|.....++++.+.+||++|.||+.+.. . ..+.++.+|+.+.+....+ .++..|.|+|
T Consensus 42 ~~~~~~~l~D---~~gr~~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~---~Gv~~I~~tG- 114 (373)
T PLN02951 42 SNPVSDMLVD---SFGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA---AGVDKIRLTG- 114 (373)
T ss_pred CCCCCccccc---CCCCcccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH---CCCCEEEEEC-
Confidence 4556666654 34545567999999999999999997532 1 1246999999887765543 3688999999
Q ss_pred CCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec------------------------
Q 043340 169 GEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR------------------------ 222 (327)
Q Consensus 169 GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS------------------------ 222 (327)
||||+++ .+.++++.+++..|+ ..++++|||+. +.+++|.+.++. .+.||
T Consensus 115 GEPllr~-dl~eli~~l~~~~gi--~~i~itTNG~lL~~~~~~L~~aGld-~VnISLDsl~~e~~~~itr~~~~~~vl~~ 190 (373)
T PLN02951 115 GEPTLRK-DIEDICLQLSSLKGL--KTLAMTTNGITLSRKLPRLKEAGLT-SLNISLDTLVPAKFEFLTRRKGHDRVLES 190 (373)
T ss_pred CCCcchh-hHHHHHHHHHhcCCC--ceEEEeeCcchHHHHHHHHHhCCCC-eEEEeeccCCHHHHHHHhcCCCHHHHHHH
Confidence 9999995 488899888643366 35899999973 457788776542 23333
Q ss_pred ------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC
Q 043340 223 ------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262 (327)
Q Consensus 223 ------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~ 262 (327)
++|+|+ +++.+++++++..+ ..+.+|.|+|.++..+
T Consensus 191 I~~a~~~G~~~vkin~vv~~g~N~--~Ei~~li~~a~~~g--i~vr~ie~mP~~~~~~ 244 (373)
T PLN02951 191 IDTAIELGYNPVKVNCVVMRGFND--DEICDFVELTRDKP--INVRFIEFMPFDGNVW 244 (373)
T ss_pred HHHHHHcCCCcEEEEEEecCCCCH--HHHHHHHHHHHhCC--CeEEEEEcccCCCCcc
Confidence 578887 46899999998865 6888999999876543
No 31
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.67 E-value=1.4e-15 Score=144.93 Aligned_cols=140 Identities=29% Similarity=0.401 Sum_probs=110.8
Q ss_pred CCCceeEEEEEecCCCCCCCCCCCCCC-CCCC---CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHH
Q 043340 107 KGPMRLTACVSSQVGCPLRCSFCATGK-GGFS---RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAH 182 (327)
Q Consensus 107 ~g~~r~tlcVssq~GCnl~C~fC~t~~-~~~~---r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i 182 (327)
.|.....+-+|.+..||++|.||+... ..+. ..||++||..-+..+.+ .++..|-++| ||||+. ..+.+++
T Consensus 6 ~gR~~~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~---~Gv~kvRlTG-GEPllR-~dl~eIi 80 (322)
T COG2896 6 FGRPVRYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE---LGVEKVRLTG-GEPLLR-KDLDEII 80 (322)
T ss_pred cCCEeceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHH---cCcceEEEeC-CCchhh-cCHHHHH
Confidence 444566788888999999999999854 4333 37899999887777654 3799999999 999999 5689999
Q ss_pred HHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec--------------------------------------
Q 043340 183 RCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR-------------------------------------- 222 (327)
Q Consensus 183 ~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS-------------------------------------- 222 (327)
+.+.+. ++ +.++++|||+. ...++|.++|+. .+.||
T Consensus 81 ~~l~~~-~~--~~islTTNG~~L~~~a~~Lk~AGl~-rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKl 156 (322)
T COG2896 81 ARLARL-GI--RDLSLTTNGVLLARRAADLKEAGLD-RVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKL 156 (322)
T ss_pred HHHhhc-cc--ceEEEecchhhHHHHHHHHHHcCCc-EEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEE
Confidence 998643 44 68999999983 457888888764 33333
Q ss_pred ----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 223 ----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 223 ----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
++|+||. ++..+++|+++.+ ..+.+|.|+|.+.
T Consensus 157 N~Vv~kgvNd~--ei~~l~e~~~~~~--~~lrfIE~m~~g~ 193 (322)
T COG2896 157 NTVLMKGVNDD--EIEDLLEFAKERG--AQLRFIELMPLGE 193 (322)
T ss_pred EEEEecCCCHH--HHHHHHHHHhhcC--CceEEEEEeecCc
Confidence 8999985 6999999999976 6889999998874
No 32
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.66 E-value=8.4e-15 Score=130.01 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=104.4
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhcc
Q 043340 113 TACVSSQVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~ 189 (327)
+..+.++.|||++|.||+++... ....++++++++.+.... ..++.|.|+| ||||++++ +.++++.+++ .
T Consensus 17 ~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~----~~~~~i~~sG-GEPll~~~-l~~li~~~~~-~ 89 (191)
T TIGR02495 17 LAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ----GLIDGVVITG-GEPTLQAG-LPDFLRKVRE-L 89 (191)
T ss_pred eEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc----CCCCeEEEEC-CcccCcHh-HHHHHHHHHH-C
Confidence 34444568999999999997432 235689999998887642 2478999999 99999976 8899999964 5
Q ss_pred CCCCccEEEEcCCcHH-HHHHHHhcCCCcceeecccCCCC----------cH-HHHHHHHHHHHhcCCcceEEEEeccCC
Q 043340 190 QIGQRMITISTVGVPN-TIKKLASYKLQSTLAIRSAGVND----------QV-EHAVELAELLHEWGRGHHVNLIPFNPI 257 (327)
Q Consensus 190 gi~~r~itisTnG~~~-~i~~L~~~~~~v~lavSI~GvND----------~~-e~a~~L~~~l~~l~~~~~vnLIp~np~ 257 (327)
|+ ++.+.|||+.+ .++++.+.+.-..+.+|+++..+ .. +++.+..++++..+....++. .++|.
T Consensus 90 g~---~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~-~v~~~ 165 (191)
T TIGR02495 90 GF---EVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRT-TVHRG 165 (191)
T ss_pred CC---eEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEE-EEeCC
Confidence 77 89999999865 47778776632357777555322 12 244455566665554344443 22321
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhCC
Q 043340 258 EGSDYQRPYKKAVLAFAGALESHK 281 (327)
Q Consensus 258 ~~~~~~~p~~e~i~~f~~~L~~~g 281 (327)
. .+.++++++.+.+.+.|
T Consensus 166 ----~--~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 166 ----F--LDEEDLAEIATRIKENG 183 (191)
T ss_pred ----C--CCHHHHHHHHHHhccCC
Confidence 1 13578999999998877
No 33
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.65 E-value=7.4e-15 Score=139.57 Aligned_cols=140 Identities=26% Similarity=0.389 Sum_probs=101.0
Q ss_pred CCCceeEEEEEecCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHH
Q 043340 107 KGPMRLTACVSSQVGCPLRCSFCATGKGGF--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 107 ~g~~r~tlcVssq~GCnl~C~fC~t~~~~~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~ 184 (327)
.|+.-.++.++.+.+||++|.||+.+.... .+.++.+|+...+..... .+++.|.|+| ||||++++ +.++++.
T Consensus 5 ~gr~~~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~---~gi~~I~~tG-GEPll~~~-l~~iv~~ 79 (302)
T TIGR02668 5 FGRPVTSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASE---FGVRKVKITG-GEPLLRKD-LIEIIRR 79 (302)
T ss_pred CCCccCeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHH---cCCCEEEEEC-cccccccC-HHHHHHH
Confidence 443345788999999999999999864332 357999998766554432 3688999999 99999965 7789998
Q ss_pred hhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec----------------------------------------
Q 043340 185 LNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR---------------------------------------- 222 (327)
Q Consensus 185 l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS---------------------------------------- 222 (327)
+++ .|+ .+++++|||+. +.+..|.+.++. .+.||
T Consensus 80 l~~-~g~--~~v~i~TNG~ll~~~~~~l~~~g~~-~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~ 155 (302)
T TIGR02668 80 IKD-YGI--KDVSMTTNGILLEKLAKKLKEAGLD-RVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNM 155 (302)
T ss_pred HHh-CCC--ceEEEEcCchHHHHHHHHHHHCCCC-EEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence 864 455 47999999974 346667665532 33333
Q ss_pred --ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 223 --I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
++|.|+ +++.++++++++++ ..+++|+|+|.+.
T Consensus 156 v~~~g~n~--~ei~~~~~~~~~~g--~~~~~ie~~p~~~ 190 (302)
T TIGR02668 156 VVLKGIND--NEIPDMVEFAAEGG--AILQLIELMPPGE 190 (302)
T ss_pred EEeCCCCH--HHHHHHHHHHHhcC--CEEEEEEEeECCC
Confidence 566665 46888888888865 5688888888653
No 34
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.63 E-value=1.3e-14 Score=140.04 Aligned_cols=142 Identities=24% Similarity=0.330 Sum_probs=101.7
Q ss_pred CCCCceeEEEEEecCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHH
Q 043340 106 EKGPMRLTACVSSQVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAH 182 (327)
Q Consensus 106 ~~g~~r~tlcVssq~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i 182 (327)
..|..-..+-++.+.+||++|.||+..... ....++.+|+...+..+.+ .++..|.|+| ||||++. .+.+++
T Consensus 8 ~~gr~i~~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~---~Gv~~I~~tG-GEPllr~-dl~~li 82 (329)
T PRK13361 8 SFGRTVTYLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTE---LGVRKIRLTG-GEPLVRR-GCDQLV 82 (329)
T ss_pred CCCCccCeEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHH---CCCCEEEEEC-cCCCccc-cHHHHH
Confidence 345233356677889999999999975432 2357999999876665543 3689999999 9999994 588999
Q ss_pred HHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec--------------------------------------
Q 043340 183 RCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR-------------------------------------- 222 (327)
Q Consensus 183 ~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS-------------------------------------- 222 (327)
+.+++..++ ..++++|||+. +.+++|.+.++. .+.||
T Consensus 83 ~~i~~~~~l--~~i~itTNG~ll~~~~~~L~~aGl~-~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~i 159 (329)
T PRK13361 83 ARLGKLPGL--EELSLTTNGSRLARFAAELADAGLK-RLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKL 159 (329)
T ss_pred HHHHhCCCC--ceEEEEeChhHHHHHHHHHHHcCCC-eEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEE
Confidence 988643334 26899999973 356777776543 23333
Q ss_pred ----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 223 ----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 223 ----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
++|.|+ +++.++++|+++++ ..+.+|.|.|.+.
T Consensus 160 n~v~~~g~N~--~ei~~~~~~~~~~g--i~~~~ie~mP~g~ 196 (329)
T PRK13361 160 NAVILRGQND--DEVLDLVEFCRERG--LDIAFIEEMPLGE 196 (329)
T ss_pred EEEEECCCCH--HHHHHHHHHHHhcC--CeEEEEecccCCC
Confidence 567765 57888888888866 4677788888764
No 35
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.58 E-value=1e-13 Score=136.99 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=115.8
Q ss_pred CCCCCCCCCCCCCCC---------------------------CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc
Q 043340 120 VGCPLRCSFCATGKG---------------------------GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM 172 (327)
Q Consensus 120 ~GCnl~C~fC~t~~~---------------------------~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl 172 (327)
.|||+.|+||++++. ...+.+|++|+++++.....++......|+|+|.|||+
T Consensus 7 ~gC~~~C~wC~~p~~~~~~~~~c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl 86 (404)
T TIGR03278 7 IDCRGFCRYCYFKKVDDEQPFGCKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVS 86 (404)
T ss_pred CCCCCcCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccc
Confidence 578888888877532 02367899999999999887665567899999945555
Q ss_pred CChhhHHHHHHHhhhccCCCCccEEEE-cCCc---H-HHHHHHHhcCCCcceeec-------------------------
Q 043340 173 LNLKSVLEAHRCLNKDVQIGQRMITIS-TVGV---P-NTIKKLASYKLQSTLAIR------------------------- 222 (327)
Q Consensus 173 ln~~~v~~~i~~l~~~~gi~~r~itis-TnG~---~-~~i~~L~~~~~~v~lavS------------------------- 222 (327)
.+ +++.++++.+++ .|+ ++++. |||. . +.+++|++.+++ .+.+|
T Consensus 87 ~~-~~l~eLl~~lk~-~gi---~taI~~TnG~~l~~~e~~~~L~~~gld-~v~iSvka~dpe~h~kl~G~~~a~~ILe~L 160 (404)
T TIGR03278 87 CY-PELEELTKGLSD-LGL---PIHLGYTSGKGFDDPEIAEFLIDNGVR-EVSFTVFATDPELRREWMKDPTPEASLQCL 160 (404)
T ss_pred cC-HHHHHHHHHHHh-CCC---CEEEeCCCCcccCCHHHHHHHHHcCCC-EEEEecccCCHHHHHHHhCCCCHHHHHHHH
Confidence 54 889999999974 588 89986 9964 2 357888776432 12222
Q ss_pred ---------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-----------CCCCCcHHHHHHH-HH
Q 043340 223 ---------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-----------DYQRPYKKAVLAF-AG 275 (327)
Q Consensus 223 ---------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-----------~~~~p~~e~i~~f-~~ 275 (327)
+||+||+++. .++++++++++ ...|+|.|||+.+.. .+++++.+++.++ .+
T Consensus 161 ~~L~e~~~v~~~ivlIPGiND~eel-~~ti~~L~~lg-~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~ 238 (404)
T TIGR03278 161 RRFCESCEVHAASVIIPGVNDGDVL-WKTCADLESWG-AKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRE 238 (404)
T ss_pred HHHHhcCCEEEEEEEeCCccCcHHH-HHHHHHHHHCC-CCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHH
Confidence 9999998765 59999999986 468999999964321 2567788888777 66
Q ss_pred HHHhCCCeEE
Q 043340 276 ALESHKITTS 285 (327)
Q Consensus 276 ~L~~~gi~v~ 285 (327)
+.++.++.++
T Consensus 239 ~~~~~~i~~~ 248 (404)
T TIGR03278 239 THKEFPIRVT 248 (404)
T ss_pred HHHHhCCccc
Confidence 6677776653
No 36
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.57 E-value=3e-13 Score=130.49 Aligned_cols=112 Identities=27% Similarity=0.329 Sum_probs=80.6
Q ss_pred CCCceeEEEEEecCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHH
Q 043340 107 KGPMRLTACVSSQVGCPLRCSFCATGKGG-----FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEA 181 (327)
Q Consensus 107 ~g~~r~tlcVssq~GCnl~C~fC~t~~~~-----~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~ 181 (327)
+|+.-..+-++.+.+||++|.||+....+ ..+.++.+|+.+.+....+ .++..|.|+| ||||+++ .+.++
T Consensus 5 ~gr~~~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~---~gv~~V~ltG-GEPll~~-~l~~l 79 (334)
T TIGR02666 5 FGRRIDYLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVG---LGVRKVRLTG-GEPLLRK-DLVEL 79 (334)
T ss_pred CCCccCeEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHH---CCCCEEEEEC-ccccccC-CHHHH
Confidence 44333456677789999999999986521 2457999999876665543 3689999999 9999995 58889
Q ss_pred HHHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeecccCC
Q 043340 182 HRCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIRSAGV 226 (327)
Q Consensus 182 i~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavSI~Gv 226 (327)
++.+++..|+ ..++++|||+. +.++.|.+.++. .+.||+++.
T Consensus 80 i~~i~~~~gi--~~v~itTNG~ll~~~~~~L~~~gl~-~v~ISld~~ 123 (334)
T TIGR02666 80 VARLAALPGI--EDIALTTNGLLLARHAKDLKEAGLK-RVNVSLDSL 123 (334)
T ss_pred HHHHHhcCCC--CeEEEEeCchhHHHHHHHHHHcCCC-eEEEecccC
Confidence 9888653455 37999999984 457778777643 455664443
No 37
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.50 E-value=3.4e-13 Score=127.25 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=115.4
Q ss_pred CCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHhc---CCcceEEEeeCCCCcCChhhHHHHHHHhhhccC-C
Q 043340 121 GCPLRCSFCATGKGG-----FSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ-I 191 (327)
Q Consensus 121 GCnl~C~fC~t~~~~-----~~r~lt~~EIv~qv~~~~~~~~---~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~g-i 191 (327)
-|+.+|.||+.|... .......++|.+++.....+.+ ..+++|+|+|.|||+++ +++-++++.+++ .| +
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy-~~L~elI~~~k~-~g~~ 110 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY-PNLGELIEEIKK-RGKK 110 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc-cCHHHHHHHHHh-cCCc
Confidence 699999999996532 2345777888888887766532 47899999999999999 679999999974 45 5
Q ss_pred CCccEEEEcCCcHHH-HHHHHhcCCCcceeec-------------------------------------------ccCCC
Q 043340 192 GQRMITISTVGVPNT-IKKLASYKLQSTLAIR-------------------------------------------SAGVN 227 (327)
Q Consensus 192 ~~r~itisTnG~~~~-i~~L~~~~~~v~lavS-------------------------------------------I~GvN 227 (327)
.+.|-|||..|. +++|... -.+.+.+. ++|+|
T Consensus 111 ---~tflvTNgslpdv~~~L~~~-dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tlvkg~N 186 (296)
T COG0731 111 ---TTFLVTNGSLPDVLEELKLP-DQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTLVKGIN 186 (296)
T ss_pred ---eEEEEeCCChHHHHHHhccC-CEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEEEecccc
Confidence 789999999864 5555421 01111111 89999
Q ss_pred CcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCC-----CCcHHHHHHHHHHHHhC-CCe
Q 043340 228 DQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ-----RPYKKAVLAFAGALESH-KIT 283 (327)
Q Consensus 228 D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~-----~p~~e~i~~f~~~L~~~-gi~ 283 (327)
++.|++++++++++.+. +..|.+=.|...+...+. .|..+++..|.+.|.+. |+.
T Consensus 187 ~~~e~~~~~a~ll~~~~-Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~ 247 (296)
T COG0731 187 DDEEELEEYAELLERIN-PDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYE 247 (296)
T ss_pred CChHHHHHHHHHHHhcC-CCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCee
Confidence 99999999999999876 366766544444444444 67789999999999876 444
No 38
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.48 E-value=4.2e-13 Score=124.06 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=76.0
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC---CC---CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG---GF---SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~---~~---~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~ 184 (327)
+.+++|-+ .|||++|.||++... +. .+.++.+|+++.+.... ...+..|+|+| ||||++ +.+.++++.
T Consensus 22 ~~~~FvR~-~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~---~~~~~~V~lTG-GEPll~-~~l~~li~~ 95 (238)
T TIGR03365 22 QKTMFVRT-GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALG---GGTPLHVSLSG-GNPALQ-KPLGELIDL 95 (238)
T ss_pred CeEEEEEe-CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHh---CCCCCeEEEeC-Cchhhh-HhHHHHHHH
Confidence 66777765 699999999998642 11 12489999999887653 23478999999 999999 579999999
Q ss_pred hhhccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeecccCCC
Q 043340 185 LNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSAGVN 227 (327)
Q Consensus 185 l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavSI~GvN 227 (327)
++ ..|+ ++.|+|||+.+. +.+ +. .+ .+++|+++.+
T Consensus 96 l~-~~g~---~v~leTNGtl~~-~~l-~~-~d-~v~vs~K~~~ 130 (238)
T TIGR03365 96 GK-AKGY---RFALETQGSVWQ-DWF-RD-LD-DLTLSPKPPS 130 (238)
T ss_pred HH-HCCC---CEEEECCCCCcH-HHH-hh-CC-EEEEeCCCCC
Confidence 96 4688 899999998642 112 22 23 5777777554
No 39
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.48 E-value=2.8e-12 Score=125.77 Aligned_cols=153 Identities=17% Similarity=0.270 Sum_probs=103.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhcc
Q 043340 112 LTACVSSQVGCPLRCSFCATGKG--GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~--~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~ 189 (327)
..+.+..+.+||++|.||+.+.. ...+.++.+++.+.+..+.+ .++..|+|+| ||||++++ +.++++.+++ .
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~---~g~~~v~~~G-GEPll~~~-~~~il~~~~~-~ 89 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA---LGALQLHFSG-GEPLLRKD-LEELVAHARE-L 89 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH---cCCcEEEEEC-CccCCchh-HHHHHHHHHH-c
Confidence 46677778999999999997532 23567999888776665543 3678999999 99999965 7899999864 5
Q ss_pred CCCCccEEEEcCCcH---HHHHHHHhcCCCcceeecccCCCCc-----------HHHHHHHHHHHHhcCCcceEEEEecc
Q 043340 190 QIGQRMITISTVGVP---NTIKKLASYKLQSTLAIRSAGVNDQ-----------VEHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 190 gi~~r~itisTnG~~---~~i~~L~~~~~~v~lavSI~GvND~-----------~e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
|+ ++.+.|||+. +.++.|.+.++. .+.|||+|.++. -+.+.+-.+.++..+....++.+
T Consensus 90 g~---~~~i~TNG~ll~~~~~~~L~~~g~~-~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~v--- 162 (378)
T PRK05301 90 GL---YTNLITSGVGLTEARLAALKDAGLD-HIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAV--- 162 (378)
T ss_pred CC---cEEEECCCccCCHHHHHHHHHcCCC-EEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEE---
Confidence 77 7899999973 457888877653 688887776532 22222233344443322223221
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 256 PIEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 256 p~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
+.+.+.+++.++.+.+.+.|+.
T Consensus 163 ------v~~~N~~~i~~~~~~~~~lgv~ 184 (378)
T PRK05301 163 ------IHRHNIDQIPRIIELAVELGAD 184 (378)
T ss_pred ------eecCCHHHHHHHHHHHHHcCCC
Confidence 1223456777777777777766
No 40
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.48 E-value=1.6e-13 Score=118.66 Aligned_cols=94 Identities=17% Similarity=0.322 Sum_probs=68.3
Q ss_pred EEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCC---CCCCCC---HHHHHHHHHHHHHHhcCCcceEEEeeCC
Q 043340 96 IETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGG---FSRNLS---SHEIVGQVLAIEEIFKHRVTNVVFMGMG 169 (327)
Q Consensus 96 iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~---~~r~lt---~~EIv~qv~~~~~~~~~~v~~Ivf~G~G 169 (327)
|+...+. +|+| .|.++++ .|||++|+||+++... ..+.++ +++|++.+... ..+.+|+|+| |
T Consensus 5 i~~~s~~--dG~G-~r~~if~---~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~-----~~~~gVt~sG-G 72 (154)
T TIGR02491 5 IKPDDIV--NGEG-IRVSLFV---AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDN-----PLIDGLTLSG-G 72 (154)
T ss_pred ceECcee--cCCC-cEEEEEE---CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhc-----CCcCeEEEeC-h
Confidence 4444444 4678 6777665 7999999999997542 346788 45555544322 1367899999 9
Q ss_pred CCcCCh--hhHHHHHHHhhhccCCCCccEEEEcCCcH
Q 043340 170 EPMLNL--KSVLEAHRCLNKDVQIGQRMITISTVGVP 204 (327)
Q Consensus 170 EPlln~--~~v~~~i~~l~~~~gi~~r~itisTnG~~ 204 (327)
|||+++ +.+.++++.+++.+++ +.++.|+|+.
T Consensus 73 EPllq~~~~~l~~ll~~~k~~~~~---~~~~~~tG~~ 106 (154)
T TIGR02491 73 DPLYPRNVEELIELVKKIKAEFPE---KDIWLWTGYT 106 (154)
T ss_pred hhCCCCCHHHHHHHHHHHHHhCCC---CCEEEeeCcc
Confidence 999965 8999999999765566 7777899985
No 41
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.48 E-value=2.1e-12 Score=124.14 Aligned_cols=151 Identities=20% Similarity=0.256 Sum_probs=104.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhc
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD 188 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~ 188 (327)
.++.+..+.+||++|.||...... ..+.++++++++.+.. .++..|+|+| ||||++++ +.++++.+++
T Consensus 28 l~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e------~g~~~V~i~G-GEPLL~pd-l~eiv~~~~~- 98 (318)
T TIGR03470 28 LVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE------CGAPVVSIPG-GEPLLHPE-IDEIVRGLVA- 98 (318)
T ss_pred CEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH------cCCCEEEEeC-cccccccc-HHHHHHHHHH-
Confidence 356666778999999999985422 2457999998876543 2577899999 99999954 8899999864
Q ss_pred cCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeecccCCCCcH----------HHHHHHHHHHHhcCCcceEEEEeccC
Q 043340 189 VQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIRSAGVNDQV----------EHAVELAELLHEWGRGHHVNLIPFNP 256 (327)
Q Consensus 189 ~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavSI~GvND~~----------e~a~~L~~~l~~l~~~~~vnLIp~np 256 (327)
.|+ ++.+.|||+. +.+.++.+.+. ..+.|||+|..+.. +.+.+-.+.++..+....++..-
T Consensus 99 ~g~---~v~l~TNG~ll~~~~~~l~~~~~-~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv--- 171 (318)
T TIGR03470 99 RKK---FVYLCTNALLLEKKLDKFEPSPY-LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTL--- 171 (318)
T ss_pred cCC---eEEEecCceehHHHHHHHHhCCC-cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEE---
Confidence 466 8999999984 45777776653 57889988864221 22223333334333223333221
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 257 IEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 257 ~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
+...+.+++.++.+.+.+.|+.
T Consensus 172 -----~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 172 -----FNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred -----eCCCCHHHHHHHHHHHHHcCCC
Confidence 1234678999999999999984
No 42
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.47 E-value=4.9e-12 Score=121.84 Aligned_cols=172 Identities=20% Similarity=0.231 Sum_probs=110.7
Q ss_pred EEEEecCCCCCCCCCCCCCCC-C--CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC-hhhHHHHHHHhhhcc
Q 043340 114 ACVSSQVGCPLRCSFCATGKG-G--FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN-LKSVLEAHRCLNKDV 189 (327)
Q Consensus 114 lcVssq~GCnl~C~fC~t~~~-~--~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln-~~~v~~~i~~l~~~~ 189 (327)
+.+..+.+||++|+||+.... + ..+.++.+++.+.+..... ...+..|+|+| ||||+. .+.+.++++.+++ .
T Consensus 90 vll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~--~~~I~~VilSG-GDPl~~~~~~L~~ll~~l~~-i 165 (321)
T TIGR03822 90 VLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIAD--HPEIWEVILTG-GDPLVLSPRRLGDIMARLAA-I 165 (321)
T ss_pred EEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHh--CCCccEEEEeC-CCcccCCHHHHHHHHHHHHh-C
Confidence 334457899999999998653 2 1245677777655544432 24689999999 999985 3578888888864 2
Q ss_pred CCCCccEEEEcCCc-------HH-HHHHHHhcCCCcceeec-------------------------------ccCCCCcH
Q 043340 190 QIGQRMITISTVGV-------PN-TIKKLASYKLQSTLAIR-------------------------------SAGVNDQV 230 (327)
Q Consensus 190 gi~~r~itisTnG~-------~~-~i~~L~~~~~~v~lavS-------------------------------I~GvND~~ 230 (327)
+. ...+.+.|.+. .+ .++.|.+.+..+.+.+. ++|+||+.
T Consensus 166 ~~-v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~ 244 (321)
T TIGR03822 166 DH-VKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGVNDDP 244 (321)
T ss_pred CC-ccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCH
Confidence 31 12467777442 12 35566655432222211 89999999
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh----CCCeEEEcCCCC
Q 043340 231 EHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES----HKITTSIRQTRG 291 (327)
Q Consensus 231 e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~----~gi~v~vR~~~G 291 (327)
+++.+|.+++..++. ..+.+..+.|.++...-..+.++..++.+.+++ ..++..++...|
T Consensus 245 ~~l~~l~~~l~~~gv-~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 245 ETLAALMRAFVECRI-KPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHHHHHHHHHHhcCC-eeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCCcceeEEEeCCC
Confidence 999999999988762 456666677776654334566666666666554 334555664443
No 43
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.46 E-value=3.1e-12 Score=124.42 Aligned_cols=153 Identities=19% Similarity=0.306 Sum_probs=102.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhcc
Q 043340 112 LTACVSSQVGCPLRCSFCATGKG--GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~--~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~ 189 (327)
..+.+..+.+||++|.||+.+.. .....|+.+++.+.+..+.+ .++..|+|+| ||||+++ .+.++++.+++ .
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~---~g~~~v~~~G-GEPll~~-~~~~ii~~~~~-~ 80 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAE---LGVLQLHFSG-GEPLARP-DLVELVAHARR-L 80 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHh---cCCcEEEEeC-ccccccc-cHHHHHHHHHH-c
Confidence 35667778899999999998532 23467999887765555433 3578899999 9999995 57899999864 5
Q ss_pred CCCCccEEEEcCCcH---HHHHHHHhcCCCcceeecccCCCCcH-----------HHHHHHHHHHHhcCCcceEEEEecc
Q 043340 190 QIGQRMITISTVGVP---NTIKKLASYKLQSTLAIRSAGVNDQV-----------EHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 190 gi~~r~itisTnG~~---~~i~~L~~~~~~v~lavSI~GvND~~-----------e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
|+ ++.+.|||+. +.+++|.+.++. .+.|||+|.++.. +.+.+..+.+++.+....++..
T Consensus 81 g~---~~~l~TNG~ll~~e~~~~L~~~g~~-~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~v--- 153 (358)
T TIGR02109 81 GL---YTNLITSGVGLTEARLDALADAGLD-HVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFV--- 153 (358)
T ss_pred CC---eEEEEeCCccCCHHHHHHHHhCCCC-EEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEE---
Confidence 77 7999999973 357888887653 5888988876421 1122222334443322223221
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 256 PIEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 256 p~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
...-+.+++.++.+.+.+.|+.
T Consensus 154 ------v~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 154 ------IHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred ------eccCCHHHHHHHHHHHHHcCCC
Confidence 1223456778888888887765
No 44
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.45 E-value=4.7e-12 Score=122.44 Aligned_cols=173 Identities=18% Similarity=0.261 Sum_probs=100.3
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChh-hHHHHHHHhhhccC
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGFSRNLS-SHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLK-SVLEAHRCLNKDVQ 190 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~~r~lt-~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~-~v~~~i~~l~~~~g 190 (327)
.+.+..+.|||++|+||++.......... .+++.+.+..... ..++..|+|+| ||||+..+ .+.++++.+++.-+
T Consensus 114 rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~i~eV~lsG-GDPLl~~d~~L~~ll~~L~~i~~ 190 (331)
T TIGR00238 114 RALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAE--HPEIIEILISG-GDPLMAKDHELEWLLKRLEEIPH 190 (331)
T ss_pred cEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHh--CCCcCEEEEEC-CccccCCHHHHHHHHHHHHhcCC
Confidence 34455678999999999986433222222 4444433333322 24689999999 99999865 37777777754212
Q ss_pred CCCccEEEEcCCcH-----HH-HHHHHhcCCCcceeec--------------------------------ccCCCCcHHH
Q 043340 191 IGQRMITISTVGVP-----NT-IKKLASYKLQSTLAIR--------------------------------SAGVNDQVEH 232 (327)
Q Consensus 191 i~~r~itisTnG~~-----~~-i~~L~~~~~~v~lavS--------------------------------I~GvND~~e~ 232 (327)
+..-++...|+++. +. ++.|.+.+... +.++ ++|+||+.+.
T Consensus 191 ~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~-~~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~ 269 (331)
T TIGR00238 191 LVRLRIGTRLPVVIPQRITDELCELLASFELQL-MLVTHINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQI 269 (331)
T ss_pred ccEEEeecCCCccCchhcCHHHHHHHHhcCCcE-EEEccCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHH
Confidence 21014444455542 23 34444433221 1111 9999999999
Q ss_pred HHHHHHHHHhcCCcceEEEEeccCCCCC-CCCCCcHHHHHHHHHHHHh----CCCeEEEcCCCC
Q 043340 233 AVELAELLHEWGRGHHVNLIPFNPIEGS-DYQRPYKKAVLAFAGALES----HKITTSIRQTRG 291 (327)
Q Consensus 233 a~~L~~~l~~l~~~~~vnLIp~np~~~~-~~~~p~~e~i~~f~~~L~~----~gi~v~vR~~~G 291 (327)
+.+|.+.+..++. ..+.+..+.|.++. .|..| .++..++.+.+++ +.++..|+.-.|
T Consensus 270 l~~L~~~l~~~gV-~pyyl~~~~~~~g~~~f~~~-~~~~~~i~~~l~~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 270 LAKLSIALFKVGI-IPYYLHYLDKVQGAKHFLVP-DAEAAQIVKELARLTSGYLVPKFAVEIMG 331 (331)
T ss_pred HHHHHHHHhhcCe-ecCeecCcCCCCCcccccCC-HHHHHHHHHHHHhcCCCCcceeEEecCCC
Confidence 9999998887652 34455555566554 45544 4444444444443 456667775444
No 45
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=120.82 Aligned_cols=128 Identities=23% Similarity=0.423 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGFSR------NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~~r------~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~ 184 (327)
+..+-|-...|||++|.||.-....+.| ...++-+++.+....+.. .+--...+-|+|||+++ +++.++++.
T Consensus 106 tNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~K-gkglEaHlDGqGEP~lY-P~l~~lVqa 183 (414)
T COG2100 106 TNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFK-GKGLEAHLDGQGEPLLY-PHLVDLVQA 183 (414)
T ss_pred ceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhh-CCCeEEEecCCCCCccc-hhHHHHHHH
Confidence 6778888889999999999985443332 355677777776665543 34457889999999999 689999999
Q ss_pred hhhccCCCCccEEEEcCCcH---HHHHHHHhcCCC-cceeec--------------------------------------
Q 043340 185 LNKDVQIGQRMITISTVGVP---NTIKKLASYKLQ-STLAIR-------------------------------------- 222 (327)
Q Consensus 185 l~~~~gi~~r~itisTnG~~---~~i~~L~~~~~~-v~lavS-------------------------------------- 222 (327)
+++-.|+ ..+++.|||+. +.+++|.++|++ +||+|+
T Consensus 184 lk~~~~v--~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIa 261 (414)
T COG2100 184 LKEHKGV--EVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIA 261 (414)
T ss_pred HhcCCCc--eEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEe
Confidence 9754455 36899999984 458899998764 455544
Q ss_pred ---ccCCCCcHHHHHHHHHHHHhcC
Q 043340 223 ---SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 223 ---I~GvND~~e~a~~L~~~l~~l~ 244 (327)
+||+||+ ++.++.+|...++
T Consensus 262 Pv~lPG~ND~--E~~~iIe~A~~iG 284 (414)
T COG2100 262 PVWLPGVNDD--EMPKIIEWAREIG 284 (414)
T ss_pred eeecCCcChH--HHHHHHHHHHHhC
Confidence 9999995 5889999998764
No 46
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.41 E-value=2.8e-12 Score=119.36 Aligned_cols=182 Identities=21% Similarity=0.324 Sum_probs=129.8
Q ss_pred EEecCCCeEEEEeeccCCCCC-CceeEEEEEecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceE
Q 043340 88 IKLEDNRLIETVGIPVEDEKG-PMRLTACVSSQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNV 163 (327)
Q Consensus 88 ~~l~dg~~iE~V~i~~~~~~g-~~r~tlcVssq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~I 163 (327)
.++++...|-+..++++.++- -+..|++. .||||+|.||+||.. +.+..++++++.+.+...++ .+.+||
T Consensus 96 C~v~~~~~vas~flH~GEE~~LvpSgTVFF---sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~---~GakNv 169 (335)
T COG1313 96 CRVKEKPYVASEFLHFGEEPPLVPSGTVFF---SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRR---HGAKNV 169 (335)
T ss_pred cccCceeeeeccccccCcCCcccCCceEEe---cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHH---hcCcce
Confidence 346666677777777653210 01346666 699999999999854 45678999999887777664 378999
Q ss_pred EEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-HHHHHHHhcCCCcce-----------------------
Q 043340 164 VFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-NTIKKLASYKLQSTL----------------------- 219 (327)
Q Consensus 164 vf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-~~i~~L~~~~~~v~l----------------------- 219 (327)
.|.| |||+.+.+.++++++++.. ++ .+...|||+. +..-+|++.-++++|
T Consensus 170 N~Vg-g~Ptp~lp~Ile~l~~~~~--~i---PvvwNSnmY~s~E~l~lL~gvVDiyL~DfKYgNdeca~kySkvp~Y~eV 243 (335)
T COG1313 170 NFVG-GDPTPHLPFILEALRYASE--NI---PVVWNSNMYMSEETLKLLDGVVDIYLPDFKYGNDECAEKYSKVPNYWEV 243 (335)
T ss_pred eecC-CCCCCchHHHHHHHHHHhc--CC---CEEEecCCccCHHHHHHhhccceeeecccccCCHHHHHHhhcCCchHHH
Confidence 9999 9999999999999999853 36 7899999985 455555554222222
Q ss_pred ---------------eec---ccCCCCcHHH-HHHHHHHHHhc-CCcceEEEEe-ccCCCC-CCC----CCCcHHHHHHH
Q 043340 220 ---------------AIR---SAGVNDQVEH-AVELAELLHEW-GRGHHVNLIP-FNPIEG-SDY----QRPYKKAVLAF 273 (327)
Q Consensus 220 ---------------avS---I~GvND~~e~-a~~L~~~l~~l-~~~~~vnLIp-~np~~~-~~~----~~p~~e~i~~f 273 (327)
-|. +||-- ++ -+.+.+|+... +....||++. |+|... ..| ++++.+++++.
T Consensus 244 v~rn~~~~~~~~g~~iiRHLVlPghl---ecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a 320 (335)
T COG1313 244 VTRNILEAKEQVGGLIIRHLVLPGHL---ECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKA 320 (335)
T ss_pred HHHHHHHHHHhcCceEEEEEecCCch---hhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHH
Confidence 111 77743 33 56678888764 2367899974 887542 223 57889999999
Q ss_pred HHHHHhCCCeE
Q 043340 274 AGALESHKITT 284 (327)
Q Consensus 274 ~~~L~~~gi~v 284 (327)
.++.++.|+.-
T Consensus 321 ~~~a~~~gl~~ 331 (335)
T COG1313 321 LEYAEKLGLTN 331 (335)
T ss_pred HHHHHHcCCce
Confidence 99999999863
No 47
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.41 E-value=4.1e-12 Score=111.64 Aligned_cols=162 Identities=20% Similarity=0.198 Sum_probs=103.6
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhcC--CcceEEEeeCCCCcCChh-hHHHHHHHhhhc
Q 043340 113 TACVSSQVGCPLRCSFCATGKGG-FSRNLSSHEIVGQVLAIEEIFKH--RVTNVVFMGMGEPMLNLK-SVLEAHRCLNKD 188 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~-~~r~lt~~EIv~qv~~~~~~~~~--~v~~Ivf~G~GEPlln~~-~v~~~i~~l~~~ 188 (327)
++++..+.|||++|.||+.+... ..+..+++++.+++....+.... .+..+.|.| |||+++.+ .+.++++.+++.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~g-g~~~~~~~~~~~~~~~~~~~~ 80 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGG-GTPTLLSPEQLEELLEAIREI 80 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECC-CCCCCCCHHHHHHHHHHHHHh
Confidence 35667778999999999986532 15667788888888776432111 247788888 99999875 488888888653
Q ss_pred cCCC-CccEEEEcCCc---HHHHHHHHhcCCCcceeecccCCC----------CcHHHHHHHHHHHHhcC-CcceEEEEe
Q 043340 189 VQIG-QRMITISTVGV---PNTIKKLASYKLQSTLAIRSAGVN----------DQVEHAVELAELLHEWG-RGHHVNLIP 253 (327)
Q Consensus 189 ~gi~-~r~itisTnG~---~~~i~~L~~~~~~v~lavSI~GvN----------D~~e~a~~L~~~l~~l~-~~~~vnLIp 253 (327)
.+.. ...+++.|||. ...+++|.+.+.. .+.+|+...+ .+.++..+.++.+++.+ ....+.+++
T Consensus 81 ~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~-~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~ 159 (216)
T smart00729 81 LGLADDVEITIETRPGTLTEELLEALKEAGVN-RVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV 159 (216)
T ss_pred CCCCCCeEEEEEeCcccCCHHHHHHHHHcCCC-eEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe
Confidence 2210 22688999975 2468888888654 5777755432 22344445555555554 223333333
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 254 FNPIEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 254 ~np~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
-. ..-+.+++.++.+.+.+.|+.
T Consensus 160 g~-------~~~~~~~~~~~~~~~~~~~~~ 182 (216)
T smart00729 160 GL-------PGETEEDFEETLKLLKELGPD 182 (216)
T ss_pred cC-------CCCCHHHHHHHHHHHHHcCCC
Confidence 11 123567888888888887776
No 48
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.3e-12 Score=114.85 Aligned_cols=85 Identities=28% Similarity=0.455 Sum_probs=68.7
Q ss_pred ceeEEEEEecCCCCCCCCCCCCCCCC------CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHH
Q 043340 110 MRLTACVSSQVGCPLRCSFCATGKGG------FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHR 183 (327)
Q Consensus 110 ~r~tlcVssq~GCnl~C~fC~t~~~~------~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~ 183 (327)
+|.+++|++ .|||++|.||.|.... ..+.++.+||++++.... ....+|+|+| |||+++ +++.++++
T Consensus 21 Gr~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~----~~~~~V~lTG-GEP~~~-~~l~~Ll~ 93 (212)
T COG0602 21 GRPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG----YKARGVSLTG-GEPLLQ-PNLLELLE 93 (212)
T ss_pred cceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC----CCcceEEEeC-CcCCCc-ccHHHHHH
Confidence 488999977 6999999999995331 236688899999887642 3456999999 999777 67899999
Q ss_pred HhhhccCCCCccEEEEcCCcHH
Q 043340 184 CLNKDVQIGQRMITISTVGVPN 205 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTnG~~~ 205 (327)
.+++ .|+ ++.++|||..+
T Consensus 94 ~l~~-~g~---~~~lETngti~ 111 (212)
T COG0602 94 LLKR-LGF---RIALETNGTIP 111 (212)
T ss_pred HHHh-CCc---eEEecCCCCcc
Confidence 9964 489 99999999864
No 49
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.32 E-value=3.3e-12 Score=104.76 Aligned_cols=83 Identities=31% Similarity=0.507 Sum_probs=46.8
Q ss_pred cCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc--CChhhHHHHHHHhhhccCCCC
Q 043340 119 QVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM--LNLKSVLEAHRCLNKDVQIGQ 193 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl--ln~~~v~~~i~~l~~~~gi~~ 193 (327)
+.+||++|.||++... .....++.+++.+.+..... .+.....|+|+| |||| ++++.+.++++.+++ .+ +.
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~~G-GEPll~~~~~~l~~~i~~~~~-~~-~~ 80 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKE-KGFRPSTVVFTG-GEPLLYLNPEDLIELIEYLKE-RG-PE 80 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHH-TT----EEEEES-SSGGGSTTHHHHHHHHCTSTT------
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHh-cCCceEEEEEEC-CCCccccCHHHHHHHHHHHHh-hC-CC
Confidence 4799999999998532 23456676666665543332 222346799999 9999 677889999998864 34 12
Q ss_pred ccEEEEcCCcHH
Q 043340 194 RMITISTVGVPN 205 (327)
Q Consensus 194 r~itisTnG~~~ 205 (327)
.+|.+.|||+.+
T Consensus 81 ~~i~i~TNg~~~ 92 (119)
T PF13394_consen 81 IKIRIETNGTLP 92 (119)
T ss_dssp -EEEEEE-STTH
T ss_pred ceEEEEeCCeec
Confidence 389999999965
No 50
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.31 E-value=1.2e-11 Score=106.41 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=65.2
Q ss_pred ecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCc
Q 043340 118 SQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQR 194 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r 194 (327)
+..|||++|+||+++.. ...+.++.+++++++.... ..+.+|+|+| || ++++.+.++++.+++ .|+
T Consensus 21 fl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~----~~~~gVt~SG-GE--l~~~~l~~ll~~lk~-~Gl--- 89 (147)
T TIGR02826 21 YITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR----SLISCVLFLG-GE--WNREALLSLLKIFKE-KGL--- 89 (147)
T ss_pred EeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC----CCCCEEEEec-hh--cCHHHHHHHHHHHHH-CCC---
Confidence 33799999999999643 2246799999999887643 2468999999 99 677899999999974 588
Q ss_pred cEEEEcCCcHHH-HHHHHh
Q 043340 195 MITISTVGVPNT-IKKLAS 212 (327)
Q Consensus 195 ~itisTnG~~~~-i~~L~~ 212 (327)
++.+.|||+.+. .+++++
T Consensus 90 ~i~l~Tg~~~~~~~~~il~ 108 (147)
T TIGR02826 90 KTCLYTGLEPKDIPLELVQ 108 (147)
T ss_pred CEEEECCCCCHHHHHHHHH
Confidence 899999987653 334443
No 51
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.31 E-value=7.7e-12 Score=104.97 Aligned_cols=88 Identities=28% Similarity=0.565 Sum_probs=57.5
Q ss_pred CCCCceeEEEEEecCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC--ChhhHHH
Q 043340 106 EKGPMRLTACVSSQVGCPLRCSFCATGKGGF---SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML--NLKSVLE 180 (327)
Q Consensus 106 ~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~---~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll--n~~~v~~ 180 (327)
|+| .|.+++ +.|||++|+||+++.... ...++ .+.++++..... ..++..|+|+| ||||+ +++.+.+
T Consensus 3 g~g-~~~~~~---t~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~--~~~~~~i~l~G-GEPll~~~~~~l~~ 74 (139)
T PF13353_consen 3 GEG-IRVVLF---TNGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELK--NYGIKGIVLTG-GEPLLHENYDELLE 74 (139)
T ss_dssp SSS-CEEEEE---EC--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHC--CCCCCEEEEEC-STGGGHHSHHHHHH
T ss_pred CCC-EEEEEE---cCcccccCcCcCCcccCccccccccc-chhhhhhhhHHh--cCCceEEEEcC-CCeeeeccHhHHHH
Confidence 455 566554 478999999999865432 22344 566666655432 35789999999 99999 8899999
Q ss_pred HHHHhhhccCCCCccEEEEcCCcH
Q 043340 181 AHRCLNKDVQIGQRMITISTVGVP 204 (327)
Q Consensus 181 ~i~~l~~~~gi~~r~itisTnG~~ 204 (327)
+++.+++... ..+.+.|||+.
T Consensus 75 i~~~~k~~~~---~~~~~~tng~~ 95 (139)
T PF13353_consen 75 ILKYIKEKFP---KKIIILTNGYT 95 (139)
T ss_dssp HHHHHHHTT----SEEEEEETT--
T ss_pred HHHHHHHhCC---CCeEEEECCCc
Confidence 9999986543 36889999984
No 52
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=99.29 E-value=1.8e-11 Score=106.07 Aligned_cols=90 Identities=19% Similarity=0.285 Sum_probs=59.7
Q ss_pred CCCCCceeEEEEEecCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC--hhhHH
Q 043340 105 DEKGPMRLTACVSSQVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN--LKSVL 179 (327)
Q Consensus 105 ~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln--~~~v~ 179 (327)
+|+| .|.++++ .|||++|+||+++... ..+.++ .+.++++............+|+|+| ||||++ .+.+.
T Consensus 13 ~GpG-~r~~if~---~GCnl~C~~C~n~~~~~~~~g~~~~-~~~~~~il~~~~~~~~~~~gvt~sG-GEPl~~~~~~~l~ 86 (154)
T PRK11121 13 NGPG-TRCTLFV---SGCVHQCPGCYNKSTWRLNSGHPFT-KEMEDQIIADLNDTRIKRQGLSLSG-GDPLHPQNVPDIL 86 (154)
T ss_pred cCCC-cEEEEEc---CCCCCcCcCCCChhhccCCCCcccC-HHHHHHHHHHHHHhCCCCCcEEEEC-CCccchhhHHHHH
Confidence 3677 6777777 7999999999997531 223345 3455555544332222347999999 999984 47788
Q ss_pred HHHHHhhhcc-CCCCccEEEEcCCcH
Q 043340 180 EAHRCLNKDV-QIGQRMITISTVGVP 204 (327)
Q Consensus 180 ~~i~~l~~~~-gi~~r~itisTnG~~ 204 (327)
++++.+++.+ +. .|. .|||+.
T Consensus 87 ~l~~~~k~~~~~~---~i~-~~tGy~ 108 (154)
T PRK11121 87 KLVQRVKAECPGK---DIW-VWTGYK 108 (154)
T ss_pred HHHHHHHHHCCCC---CEE-EecCCC
Confidence 8888876532 33 554 478874
No 53
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.28 E-value=1.4e-10 Score=115.32 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=92.0
Q ss_pred eEEEEEec-CCCCCCCCCCCCCCC------CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChh-hHHHHHH
Q 043340 112 LTACVSSQ-VGCPLRCSFCATGKG------GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLK-SVLEAHR 183 (327)
Q Consensus 112 ~tlcVssq-~GCnl~C~fC~t~~~------~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~-~v~~~i~ 183 (327)
.++.+..+ ..||++|.||+.... ...+.|+.+++..-+....+..+.+...|+|.| ||||++.+ .+.++++
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~G-GEPlL~~~~~~~~~~~ 91 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHG-GETLMRPLSFYKKALE 91 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEc-cccCCCcHHHHHHHHH
Confidence 45556644 589999999997422 112358876665544444332122334577799 99999965 3445555
Q ss_pred Hhh---hccCCCCccEEEEcCCcH--H-HHHHHHhcCCCcceeecccCCCCcHHH----------HHHH---HHHHHhcC
Q 043340 184 CLN---KDVQIGQRMITISTVGVP--N-TIKKLASYKLQSTLAIRSAGVNDQVEH----------AVEL---AELLHEWG 244 (327)
Q Consensus 184 ~l~---~~~gi~~r~itisTnG~~--~-~i~~L~~~~~~v~lavSI~GvND~~e~----------a~~L---~~~l~~l~ 244 (327)
+++ +..++ .++|.|||+. + .++.|.+.+ +.+.|||+|..+..+. .+++ .+.++..+
T Consensus 92 ~~~~~~~~~~i---~~~i~TNG~ll~~e~~~~l~~~~--~~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~g 166 (412)
T PRK13745 92 LQKKYARGRQI---DNCIQTNGTLLTDEWCEFFRENN--FLVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHG 166 (412)
T ss_pred HHHHHcCCCce---EEEEeecCEeCCHHHHHHHHHcC--eEEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcC
Confidence 543 23455 7889999973 4 456666654 5899999997432111 1112 23333333
Q ss_pred CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeE
Q 043340 245 RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284 (327)
Q Consensus 245 ~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v 284 (327)
..++++- ...+.+.+++.++.+.+.+.|+..
T Consensus 167 --i~~~i~~-------vv~~~n~~~~~e~~~~~~~lg~~~ 197 (412)
T PRK13745 167 --VEWNAMA-------VVNDFNADYPLDFYHFFKELDCHY 197 (412)
T ss_pred --CCEEEEE-------EEcCCccccHHHHHHHHHHcCCCe
Confidence 2333321 112233456778888888888863
No 54
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.24 E-value=6.9e-10 Score=109.87 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=98.8
Q ss_pred EEEEecCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhh-HHHHHHHhhhccC
Q 043340 114 ACVSSQVGCPLRCSFCATGKG--GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKS-VLEAHRCLNKDVQ 190 (327)
Q Consensus 114 lcVssq~GCnl~C~fC~t~~~--~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~-v~~~i~~l~~~~g 190 (327)
+-+..+.+||++|+||+.... .....++.+++.+.+..... ...+..|.|+| ||||+..+. +..+++.+++--+
T Consensus 110 vLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~--~p~I~~VlLSG-GDPLll~d~~L~~iL~~L~~Iph 186 (417)
T TIGR03820 110 VLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRN--TPQIRDVLLSG-GDPLLLSDDYLDWILTELRAIPH 186 (417)
T ss_pred EEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHh--cCCCCEEEEeC-CccccCChHHHHHHHHHHhhcCC
Confidence 334446899999999998642 22356777777665544443 24789999999 999997664 4444677754224
Q ss_pred CCCccEEEEcC-----Cc--HHH-HHHHHhcCCCcceeec-------------------------------ccCCCCcHH
Q 043340 191 IGQRMITISTV-----GV--PNT-IKKLASYKLQSTLAIR-------------------------------SAGVNDQVE 231 (327)
Q Consensus 191 i~~r~itisTn-----G~--~~~-i~~L~~~~~~v~lavS-------------------------------I~GvND~~e 231 (327)
+ +.|.+.|+ +. .+. ++.|.+.+ .+.+.++ ++||||+++
T Consensus 187 V--~~IRI~TR~pvv~P~RIT~ell~~Lk~~~-~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGVND~~~ 263 (417)
T TIGR03820 187 V--EVIRIGTRVPVVLPQRITDELVAILKKHH-PVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSVLLAGVNDCPR 263 (417)
T ss_pred C--ceEEEeeccccccccccCHHHHHHHHhcC-CeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeeceEECCcCCCHH
Confidence 4 34777777 32 222 34444432 2233222 999999998
Q ss_pred HHHHHHHHHHhcCCcceEEEEecc-----CCCC-CCCCCCcHHHH---HHHHHHHHhCCCeEEEcCCC
Q 043340 232 HAVELAELLHEWGRGHHVNLIPFN-----PIEG-SDYQRPYKKAV---LAFAGALESHKITTSIRQTR 290 (327)
Q Consensus 232 ~a~~L~~~l~~l~~~~~vnLIp~n-----p~~~-~~~~~p~~e~i---~~f~~~L~~~gi~v~vR~~~ 290 (327)
-+.+|.+-+-.++ +.||+ +..| ..|..|-.+-+ +.++..+..+.++..|+..+
T Consensus 264 ~l~~L~~~L~~~g------V~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG~~vP~~v~d~p 325 (417)
T TIGR03820 264 IMKKLVHKLVANR------VRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSGFAVPTYVVDAP 325 (417)
T ss_pred HHHHHHHHHHHCC------CeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCCCCceEEEEecC
Confidence 8777776555443 45655 3444 35666654333 33333334445666676544
No 55
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.24 E-value=2.5e-10 Score=111.44 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=65.9
Q ss_pred cCCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHH-HHHHhcCCcceEEEeeCCCCcCCh-hhHHHHHHHhhhccC
Q 043340 119 QVGCPLRCSFCATGKGGFS------RNLSSHEIVGQVLA-IEEIFKHRVTNVVFMGMGEPMLNL-KSVLEAHRCLNKDVQ 190 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~~~~------r~lt~~EIv~qv~~-~~~~~~~~v~~Ivf~G~GEPlln~-~~v~~~i~~l~~~~g 190 (327)
+.+||++|.||+.+..... ..++. |.++.+.. +.+. ......|+|+| ||||+++ +.+.++++++++ .|
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~-~~~~~~i~~~~~~-~~~~~~i~~~G-GEPll~~~~~~~~~~~~~~~-~~ 87 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRD-EVLESMVKRVLNE-AEGHCSFAFQG-GEPTLAGLEFFEELMELQRK-HN 87 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCH-HHHHHHHHHHHhc-cCCceEEEEEC-CccccCChHHHHHHHHHHHH-hc
Confidence 4799999999998643221 13554 44444433 2221 12456899999 9999995 566788888864 23
Q ss_pred CCCc--cEEEEcCCcH--H-HHHHHHhcCCCcceeecccCC
Q 043340 191 IGQR--MITISTVGVP--N-TIKKLASYKLQSTLAIRSAGV 226 (327)
Q Consensus 191 i~~r--~itisTnG~~--~-~i~~L~~~~~~v~lavSI~Gv 226 (327)
.... .++|.|||+. + .++.|.+.+ +.+.|||+|.
T Consensus 88 ~~~~~~~~~i~TNG~ll~~~~~~~l~~~~--~~v~iSlDg~ 126 (370)
T PRK13758 88 YKNLKIYNSLQTNGTLIDESWAKFLSENK--FLVGLSMDGP 126 (370)
T ss_pred cCCCeEEEEEEecCEecCHHHHHHHHHcC--ceEEEeecCC
Confidence 2111 3689999974 4 456666653 5788998885
No 56
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.23 E-value=4.9e-10 Score=107.09 Aligned_cols=138 Identities=27% Similarity=0.454 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhcc
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGF-SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~-~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~ 189 (327)
...+.+..+..||++|.||+.+.... ...+++++..+.+..... ++. +..+.|+| |||+++ +.+.++++.+++..
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~-~g~-~~~v~~~g-GEPll~-~d~~ei~~~~~~~~ 93 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAE-LGE-IPVVIFTG-GEPLLR-PDLLEIVEYARKKG 93 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHH-cCC-eeEEEEeC-CCcccc-ccHHHHHHHHhhcC
Confidence 45667778899999999998865543 678888888755544443 223 78888999 999999 77899999987545
Q ss_pred CCCCccEEEEcCCc--H-HHHHHHHhcCCCcceeec-----------------------------------------ccC
Q 043340 190 QIGQRMITISTVGV--P-NTIKKLASYKLQSTLAIR-----------------------------------------SAG 225 (327)
Q Consensus 190 gi~~r~itisTnG~--~-~~i~~L~~~~~~v~lavS-----------------------------------------I~G 225 (327)
++ +++++|||+ . ..+++|.+.++. .+.|| +.+
T Consensus 94 ~~---~~~~~TnG~~~~~~~~~~l~~~g~~-~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~~ 169 (347)
T COG0535 94 GI---RVSLSTNGTLLTEEVLEKLKEAGLD-YVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVTK 169 (347)
T ss_pred Ce---EEEEeCCCccCCHHHHHHHHhcCCc-EEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEec
Confidence 77 899999993 2 356777766532 34444 334
Q ss_pred CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 226 VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 226 vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
.| .+++.++++++..++. ..+++.++.+.+.
T Consensus 170 ~n--~~~l~~~~~~~~~~g~-~~~~~~~~~~~g~ 200 (347)
T COG0535 170 IN--YDELPEIADLAAELGV-DELNVFPLIPVGR 200 (347)
T ss_pred Cc--HHHHHHHHHHHHHcCC-CEEEEEEEeeccc
Confidence 43 3467777777777653 4566667766543
No 57
>PRK07094 biotin synthase; Provisional
Probab=99.21 E-value=9.4e-10 Score=105.62 Aligned_cols=155 Identities=18% Similarity=0.265 Sum_probs=107.9
Q ss_pred EEecCCCCCCCCCCCCCCC--CCCC-CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCChhhHHHHHHHhhhccCC
Q 043340 116 VSSQVGCPLRCSFCATGKG--GFSR-NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLNLKSVLEAHRCLNKDVQI 191 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~~~--~~~r-~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln~~~v~~~i~~l~~~~gi 191 (327)
|..+.||+++|.||..+.. ...+ .++++||++.+....+ .+++.|.|+| |+ |..+.+.+.++++.+++..++
T Consensus 43 i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~---~g~~~i~l~g-G~~~~~~~~~l~~l~~~i~~~~~l 118 (323)
T PRK07094 43 IEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE---LGYRTIVLQS-GEDPYYTDEKIADIIKEIKKELDV 118 (323)
T ss_pred EEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH---CCCCEEEEec-CCCCCCCHHHHHHHHHHHHccCCc
Confidence 3345899999999997542 1123 4699999998877654 4789999999 96 666778899999999754566
Q ss_pred CCccEEEEcCCcH-HHHHHHHhcCCCcceeec---------------------------------------ccCC-CCcH
Q 043340 192 GQRMITISTVGVP-NTIKKLASYKLQSTLAIR---------------------------------------SAGV-NDQV 230 (327)
Q Consensus 192 ~~r~itisTnG~~-~~i~~L~~~~~~v~lavS---------------------------------------I~Gv-ND~~ 230 (327)
.+++++.... +.++.|.+.|.+ .+.++ |-|+ .++.
T Consensus 119 ---~i~~~~g~~~~e~l~~Lk~aG~~-~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ 194 (323)
T PRK07094 119 ---AITLSLGERSYEEYKAWKEAGAD-RYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTL 194 (323)
T ss_pred ---eEEEecCCCCHHHHHHHHHcCCC-EEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCH
Confidence 6777654333 457777776542 11111 3343 4667
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHh
Q 043340 231 EHAVELAELLHEWGRGHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGALES 279 (327)
Q Consensus 231 e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L~~ 279 (327)
+++.+..++++.++ ...+.+.||.|.++.++ .+++.++..++...++-
T Consensus 195 ed~~~~l~~l~~l~-~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~ 245 (323)
T PRK07094 195 EDLADDILFLKELD-LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRL 245 (323)
T ss_pred HHHHHHHHHHHhCC-CCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHH
Confidence 89999999999986 35688889999888764 34666666665555543
No 58
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.19 E-value=6.7e-10 Score=93.63 Aligned_cols=104 Identities=27% Similarity=0.452 Sum_probs=74.2
Q ss_pred EecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhc--cCC
Q 043340 117 SSQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQI 191 (327)
Q Consensus 117 ssq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~--~gi 191 (327)
.++.|||++|.||..+.. ...+.++++++++.+...... .++..|.|+| |||+++++. .+.+..+.+. .++
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~--~~~~~i~~~~-gep~~~~~~-~~~~~~~~~~~~~~~ 77 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQD--KGVKEIFFGG-GEPTLHPDF-IELLELLRKIKKRGI 77 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHH--TTHEEEEEES-STGGGSCHH-HHHHHHHHHCTCTTE
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHh--cCCcEEEEee-cCCCcchhH-HHHHHHHHHhhcccc
Confidence 456899999999999863 445679999999988887421 3477888877 999999664 4455554443 355
Q ss_pred CCccEEEEcCCcHH---HHHHHHhcCCCcceeecccCCCC
Q 043340 192 GQRMITISTVGVPN---TIKKLASYKLQSTLAIRSAGVND 228 (327)
Q Consensus 192 ~~r~itisTnG~~~---~i~~L~~~~~~v~lavSI~GvND 228 (327)
++.+.|||... .++.|.+.+ ...+.+++.+.++
T Consensus 78 ---~i~~~t~~~~~~~~~l~~l~~~~-~~~i~~~l~s~~~ 113 (166)
T PF04055_consen 78 ---RISINTNGTLLDEELLDELKKLG-VDRIRISLESLDE 113 (166)
T ss_dssp ---EEEEEEESTTHCHHHHHHHHHTT-CSEEEEEEBSSSH
T ss_pred ---ceeeeccccchhHHHHHHHHhcC-ccEEecccccCCH
Confidence 89999999853 588888876 3567777666554
No 59
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.19 E-value=1.1e-09 Score=94.84 Aligned_cols=148 Identities=26% Similarity=0.346 Sum_probs=89.8
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhc-cCCCC
Q 043340 118 SQVGCPLRCSFCATGKGGFSRNLSSH---EIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD-VQIGQ 193 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~~~~r~lt~~---EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~-~gi~~ 193 (327)
++.|||++|.||+.+........... ++.+.+.... ......+.|+| |||+.++ .+.++++.+++. .++
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~g-gep~~~~-~~~~~i~~~~~~~~~~-- 75 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAK---ERGVEVVILTG-GEPLLYP-ELAELLRRLKKELPGF-- 75 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHH---hcCceEEEEeC-CcCCccH-hHHHHHHHHHhhCCCc--
Confidence 35799999999999765433222222 3333332222 24678888888 9999996 788888888653 256
Q ss_pred ccEEEEcCCcH---HHHHHHHhcCCCcceeecccCCCCcH-----------HHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 194 RMITISTVGVP---NTIKKLASYKLQSTLAIRSAGVNDQV-----------EHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 194 r~itisTnG~~---~~i~~L~~~~~~v~lavSI~GvND~~-----------e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
.+.+.|||.. +.+++|.+.+. ..+.+|+++.++.. ++..+..+.+...+....+.+++..+...
T Consensus 76 -~~~i~T~~~~~~~~~~~~l~~~g~-~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~ 153 (204)
T cd01335 76 -EISIETNGTLLTEELLKELKELGL-DGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDED 153 (204)
T ss_pred -eEEEEcCcccCCHHHHHHHHhCCC-ceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCCh
Confidence 8999999985 35888888753 46778876665442 22222223333323445666665443321
Q ss_pred CCCCCCcHHHHHHHHHHHHhCC
Q 043340 260 SDYQRPYKKAVLAFAGALESHK 281 (327)
Q Consensus 260 ~~~~~p~~e~i~~f~~~L~~~g 281 (327)
.+.+.+..+.+.+.+
T Consensus 154 -------~~~~~~~~~~l~~~~ 168 (204)
T cd01335 154 -------EEDDLEELELLAEFR 168 (204)
T ss_pred -------hHHHHHHHHHHHhhc
Confidence 345555555555543
No 60
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.14 E-value=2.1e-10 Score=99.84 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=82.4
Q ss_pred cCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCC
Q 043340 119 QVGCPLRCSFCATGKG-----GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ 193 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~-----~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~ 193 (327)
.+|||+.|.||+++.. .....++++|+++.+....+. .+.+-+-++| |||++-.+++.++|+.+.+
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~--~g~d~vRiSG-~EP~l~~EHvlevIeLl~~------ 118 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKK--RGCDLVRISG-AEPILGREHVLEVIELLVN------ 118 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHh--cCCcEEEeeC-CCccccHHHHHHHHHhccC------
Confidence 5899999999999632 123579999999999887664 4788999999 9999999999999999842
Q ss_pred ccEEEEcCCcH----H-HHHHHHhcCCCcceeecccCCCCcHHHHHHHH
Q 043340 194 RMITISTVGVP----N-TIKKLASYKLQSTLAIRSAGVNDQVEHAVELA 237 (327)
Q Consensus 194 r~itisTnG~~----~-~i~~L~~~~~~v~lavSI~GvND~~e~a~~L~ 237 (327)
+...++|||+. + ..+.|... +.+.+.||++|-. +|.+.++.
T Consensus 119 ~tFvlETNG~~~g~drslv~el~nr-~nv~vRVsvKG~d--pesF~kIT 164 (228)
T COG5014 119 NTFVLETNGLMFGFDRSLVDELVNR-LNVLVRVSVKGWD--PESFEKIT 164 (228)
T ss_pred ceEEEEeCCeEEecCHHHHHHHhcC-CceEEEEEecCCC--HHHHHHHh
Confidence 37899999983 3 35566553 5788999988853 44444443
No 61
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.04 E-value=5.5e-09 Score=102.73 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCCCC-CCCHHHHHHHHHH-HHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccE--E
Q 043340 122 CPLRCSFCATGKGGFSR-NLSSHEIVGQVLA-IEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMI--T 197 (327)
Q Consensus 122 Cnl~C~fC~t~~~~~~r-~lt~~EIv~qv~~-~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~i--t 197 (327)
||++|.||+........ .|+. |.++.+.. +.+..+..--.|+|.| ||||++.+.+.+.+..+.+..+- ..+| +
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~-etle~~i~~~~~~~~~~~v~~~w~G-GEPlL~~~~f~~~~~~l~~k~~~-~~~i~~s 94 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSD-ETLEEYVRQYIAASNGDKVTFTWQG-GEPLLAGLDFYRKAVALQQKYAN-GKTISNA 94 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCH-HHHHHHHHHHHhhCCCCeeEEEEEC-CccccchHHHHHHHHHHHHHHhc-CCeeEEE
Confidence 99999999997654432 3654 33333333 3322111114599999 99999977777776665433221 2255 5
Q ss_pred EEcCCcH--HHHHHHHhcCCCcceeecccCC
Q 043340 198 ISTVGVP--NTIKKLASYKLQSTLAIRSAGV 226 (327)
Q Consensus 198 isTnG~~--~~i~~L~~~~~~v~lavSI~Gv 226 (327)
+.|||+. +.+.++... .++.+.|||+|.
T Consensus 95 iqTNg~LL~~e~~e~l~~-~~~~IgISiDGp 124 (378)
T COG0641 95 LQTNGTLLNDEWAEFLAE-HDFLIGISIDGP 124 (378)
T ss_pred EEEcccccCHHHHHHHHh-cCceEEEeccCc
Confidence 9999984 555455544 356899998884
No 62
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=98.97 E-value=5.8e-08 Score=91.87 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=94.6
Q ss_pred cCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHhcCCcceEE--EeeCCCCcCCh--hhHHHHHHHhhhcc
Q 043340 119 QVGCPLRCSFCATGKG-----GFSRNLSSHEIVGQVLAIEEIFKHRVTNVV--FMGMGEPMLNL--KSVLEAHRCLNKDV 189 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~-----~~~r~lt~~EIv~qv~~~~~~~~~~v~~Iv--f~G~GEPlln~--~~v~~~i~~l~~~~ 189 (327)
+.||+++|.||..... ...+.++++|+++++....+ .+++.+. ..| ++|.... +.+.++.+.+ +..
T Consensus 36 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~~~l~~~g-~~~~~~~~~~~~~~i~~~~-~~~ 110 (296)
T TIGR00433 36 SGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA---AGATRFCLVASG-RGPKDREFMEYVEAMVQIV-EEM 110 (296)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH---CCCCEEEEEEec-CCCChHHHHHHHHHHHHHH-HhC
Confidence 6899999999998542 13467889999998877543 3555653 334 6665431 1233333333 346
Q ss_pred CCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec--------------------------------------ccCCCCc
Q 043340 190 QIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR--------------------------------------SAGVNDQ 229 (327)
Q Consensus 190 gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS--------------------------------------I~GvND~ 229 (327)
|+ ++.+++ |.. +.++.|.+.|.+ .+.++ |-|.+++
T Consensus 111 ~i---~~~~~~-g~~~~e~l~~Lk~aG~~-~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et 185 (296)
T TIGR00433 111 GL---KTCATL-GLLDPEQAKRLKDAGLD-YYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGET 185 (296)
T ss_pred CC---eEEecC-CCCCHHHHHHHHHcCCC-EEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCC
Confidence 77 666544 553 346777766532 11111 6688899
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEeccCCCCCC---CCCCcHHHHHHHHHHHHh
Q 043340 230 VEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---YQRPYKKAVLAFAGALES 279 (327)
Q Consensus 230 ~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~---~~~p~~e~i~~f~~~L~~ 279 (327)
.+++.+++++++.++. ..+.+-++.|.++.+ +.+++.++..++...++.
T Consensus 186 ~~d~~~~~~~l~~l~~-~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~ 237 (296)
T TIGR00433 186 VEDRIGLALALANLPP-ESVPINFLVKIKGTPLADNKELSADDALKTIALARI 237 (296)
T ss_pred HHHHHHHHHHHHhCCC-CEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999998763 446666777777653 556777666555555443
No 63
>PRK08508 biotin synthase; Provisional
Probab=98.97 E-value=5.8e-08 Score=91.84 Aligned_cols=167 Identities=14% Similarity=0.216 Sum_probs=110.1
Q ss_pred cCCCCCCCCCCCCCCCC---C--CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc--CChhhHHHHHHHhhhcc-C
Q 043340 119 QVGCPLRCSFCATGKGG---F--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM--LNLKSVLEAHRCLNKDV-Q 190 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~~---~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl--ln~~~v~~~i~~l~~~~-g 190 (327)
..||+.+|.||+.+... . .+.++++||++.+....+ .++..+++++.|+-+ ...+.+.++++.+++.. +
T Consensus 14 s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~---~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~ 90 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA---NGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG 90 (279)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH---CCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC
Confidence 58999999999986421 1 234799999999887654 367888886534422 24467888888887542 3
Q ss_pred CCCccEEEEcCCcH--HHHHHHHhcCCC---cceeec----------------------------------ccCCCCcHH
Q 043340 191 IGQRMITISTVGVP--NTIKKLASYKLQ---STLAIR----------------------------------SAGVNDQVE 231 (327)
Q Consensus 191 i~~r~itisTnG~~--~~i~~L~~~~~~---v~lavS----------------------------------I~GvND~~e 231 (327)
+ ++ ..++|.. +.+++|.+.|++ .++..+ |.|+++++|
T Consensus 91 l---~i-~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~e 166 (279)
T PRK08508 91 L---HL-IACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWE 166 (279)
T ss_pred c---EE-EecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHH
Confidence 3 32 3467874 468888777642 111111 889999999
Q ss_pred HHHHHHHHHHhcCCcceEEEEeccCCCCCCC--CCCcHHHHHHHHHHHHhCCCeEEEcCCCCcc
Q 043340 232 HAVELAELLHEWGRGHHVNLIPFNPIEGSDY--QRPYKKAVLAFAGALESHKITTSIRQTRGLD 293 (327)
Q Consensus 232 ~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~--~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~d 293 (327)
+..+++.++++++.. .|-+-+++|.++.++ .+++.++..+...+++-.--+..||-..|.+
T Consensus 167 d~~~~l~~lr~L~~~-svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~ 229 (279)
T PRK08508 167 DRISFLKSLASLSPH-STPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGRE 229 (279)
T ss_pred HHHHHHHHHHcCCCC-EEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChh
Confidence 999999999998743 233334556665543 3456777776666665543356778777764
No 64
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.5e-08 Score=99.36 Aligned_cols=143 Identities=23% Similarity=0.340 Sum_probs=102.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCC-hhhHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLN-LKSVLEAHR 183 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln-~~~v~~~i~ 183 (327)
+...+|+.|.|||.+|+||..+.. |..+..++++|++++..+.+ .+++.|+++| +|--+-. ...+.++++
T Consensus 143 ~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~---~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~ 219 (437)
T COG0621 143 GVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVA---QGVKEIVLTGQDVNAYGKDLGGGKPNLADLLR 219 (437)
T ss_pred CeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHH---CCCeEEEEEEEehhhccccCCCCccCHHHHHH
Confidence 588899999999999999999864 56688999999999998765 5899999999 4555532 235667777
Q ss_pred HhhhccCCCCccEEEEcCCcH---HH-HHHHHhc-CCC--c------------------------------------cee
Q 043340 184 CLNKDVQIGQRMITISTVGVP---NT-IKKLASY-KLQ--S------------------------------------TLA 220 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTnG~~---~~-i~~L~~~-~~~--v------------------------------------~la 220 (327)
.+.+.-|+ .+|.++|.=.. +. |+.+++. .+- + .++
T Consensus 220 ~l~~I~G~--~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~ 297 (437)
T COG0621 220 ELSKIPGI--ERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIA 297 (437)
T ss_pred HHhcCCCc--eEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCce
Confidence 77543454 47888776432 22 3333321 110 1 122
Q ss_pred ec------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 221 IR------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 221 vS------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
++ .|| .++|+++++.+|+++.+ ..+++..+|.|.++.+
T Consensus 298 i~tDiIVGFPg--ETeedFe~tl~lv~e~~-fd~~~~F~YSpRpGTp 341 (437)
T COG0621 298 ISTDIIVGFPG--ETEEDFEETLDLVEEVR-FDRLHVFKYSPRPGTP 341 (437)
T ss_pred EeccEEEECCC--CCHHHHHHHHHHHHHhC-CCEEeeeecCCCCCCc
Confidence 22 555 56799999999999986 5899999999998754
No 65
>PRK06256 biotin synthase; Validated
Probab=98.96 E-value=7.3e-08 Score=93.09 Aligned_cols=165 Identities=19% Similarity=0.292 Sum_probs=107.4
Q ss_pred cCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-CCcCC-hhhHHHHHHHhhhccCC
Q 043340 119 QVGCPLRCSFCATGKGG-----FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-EPMLN-LKSVLEAHRCLNKDVQI 191 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~~-----~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-EPlln-~~~v~~~i~~l~~~~gi 191 (327)
+.|||.+|.||...... ..+.++++||++.+....+ .++..+.|.+.| +|... .+.+.++++.+++..++
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~---~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i 141 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIE---EGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDL 141 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHH---CCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCC
Confidence 37999999999986431 1356899999999987764 245555554324 45433 24688888888654444
Q ss_pred CCccEEEEcCCcH--HHHHHHHhcCCCcceee----c----------------------------------ccCCCCcHH
Q 043340 192 GQRMITISTVGVP--NTIKKLASYKLQSTLAI----R----------------------------------SAGVNDQVE 231 (327)
Q Consensus 192 ~~r~itisTnG~~--~~i~~L~~~~~~v~lav----S----------------------------------I~GvND~~e 231 (327)
++.+ ++|.. +.+++|.+.|.. .+.+ | |-|.+++.+
T Consensus 142 ---~~~~-~~g~l~~e~l~~LkeaG~~-~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~e 216 (336)
T PRK06256 142 ---EICA-CLGLLTEEQAERLKEAGVD-RYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLE 216 (336)
T ss_pred ---cEEe-cCCcCCHHHHHHHHHhCCC-EEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHH
Confidence 4544 34553 357777777642 1111 1 668889999
Q ss_pred HHHHHHHHHHhcCCcceEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 232 HAVELAELLHEWGRGHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 232 ~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
+..+++++++.++. ..+.+.+|+|.++.++ ..++.+++.+...+++-.--...||-+-|.
T Consensus 217 d~~~~~~~l~~l~~-~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 217 DRVEHAFFLKELDA-DSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred HHHHHHHHHHhCCC-CEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCch
Confidence 99999999998863 4577777888877654 456677777666666543333455544444
No 66
>PRK05481 lipoyl synthase; Provisional
Probab=98.95 E-value=8e-08 Score=91.39 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=119.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC----CcCChhhHHHHHHHhh
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE----PMLNLKSVLEAHRCLN 186 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE----Plln~~~v~~~i~~l~ 186 (327)
+...++..+.||+.+|.||..+... .+.++++||++++....+ .+++.|+|+| |+ |-...+.+.++++.++
T Consensus 52 ~~~~fi~is~GC~~~C~FC~i~~~r-~~s~~~eeI~~ea~~l~~---~G~kEI~L~g-g~~~d~~~~~~~~l~~Ll~~I~ 126 (289)
T PRK05481 52 GTATFMILGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVAR---MGLKYVVITS-VDRDDLPDGGAQHFAETIRAIR 126 (289)
T ss_pred CeEEEEEecccccCCCCCceeCCCC-CCCCCHHHHHHHHHHHHH---CCCCEEEEEE-eeCCCcccccHHHHHHHHHHHH
Confidence 3455666789999999999987643 466999999999988654 4799999999 76 3233456788888886
Q ss_pred hc-cCCCCccEEEEcC-C--cHHHHHHHHhcCCCc------------------------------------ceeec---c
Q 043340 187 KD-VQIGQRMITISTV-G--VPNTIKKLASYKLQS------------------------------------TLAIR---S 223 (327)
Q Consensus 187 ~~-~gi~~r~itisTn-G--~~~~i~~L~~~~~~v------------------------------------~lavS---I 223 (327)
+. .++ +|.+.|. . ..+.+.+|.+.+..+ .+.++ |
T Consensus 127 ~~~p~i---rI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~I 203 (289)
T PRK05481 127 ELNPGT---TIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLM 203 (289)
T ss_pred hhCCCc---EEEEEccCCCCCHHHHHHHHhcCcceeeccccChHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeE
Confidence 53 244 5665553 2 124455555443110 11111 5
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHhCCCe-E----EEcCCCCcc
Q 043340 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGALESHKIT-T----SIRQTRGLD 293 (327)
Q Consensus 224 ~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L~~~gi~-v----~vR~~~G~d 293 (327)
=|+.++++|..+..++++.++ ...+++.+|.|.....+ ....+++.+.+.++..+.|+. | .||.|.-.+
T Consensus 204 vGfGET~ed~~~tl~~lrel~-~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 280 (289)
T PRK05481 204 VGLGETDEEVLEVMDDLRAAG-VDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALELGFLHVASGPLVRSSYHAD 280 (289)
T ss_pred EECCCCHHHHHHHHHHHHhcC-CCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHHcCchheEecCccccchhhH
Confidence 577889999999999999987 47899999999322122 344568888899999999985 3 366655433
No 67
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.93 E-value=5.9e-08 Score=95.36 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=103.8
Q ss_pred ecCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC--ChhhHHHHHHHhhhccCCCC
Q 043340 118 SQVGCPLRCSFCATGKG--GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML--NLKSVLEAHRCLNKDVQIGQ 193 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~--~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll--n~~~v~~~i~~l~~~~gi~~ 193 (327)
.+.+|+.+|.||.-... ...+.++++||++.+....+ .+++.|.|+| |||.. ..+.+.++++.+++.+ +
T Consensus 80 ~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~---~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~--p- 152 (371)
T PRK09240 80 LSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK---LGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF--S- 152 (371)
T ss_pred EcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh---CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC--C-
Confidence 36899999999987432 12367999999999887654 4799999999 99776 3567888888886432 1
Q ss_pred ccEEEEcCCcH-HHHHHHHhcCCCccee----------------------------------------ec---ccCCCCc
Q 043340 194 RMITISTVGVP-NTIKKLASYKLQSTLA----------------------------------------IR---SAGVNDQ 229 (327)
Q Consensus 194 r~itisTnG~~-~~i~~L~~~~~~v~la----------------------------------------vS---I~GvND~ 229 (327)
.++++++.+. +.+++|.+.|+. .+. |+ |-|++++
T Consensus 153 -~i~i~~g~lt~e~l~~Lk~aGv~-r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~ 230 (371)
T PRK09240 153 -SVSIEVQPLSEEEYAELVELGLD-GVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDW 230 (371)
T ss_pred -CceeccCCCCHHHHHHHHHcCCC-EEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCcc
Confidence 4556555543 356666665532 111 11 6688999
Q ss_pred HHHHHHHHHHHHhcCCc-----ceEEEEeccCCCCCCC---CCCcHHHHHHHHHHH----HhCCCeEEEc
Q 043340 230 VEHAVELAELLHEWGRG-----HHVNLIPFNPIEGSDY---QRPYKKAVLAFAGAL----ESHKITTSIR 287 (327)
Q Consensus 230 ~e~a~~L~~~l~~l~~~-----~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L----~~~gi~v~vR 287 (327)
.+|...++..++.++.. ..|.++.++|.++ ++ .+.+++++.+....+ -+.+|.+.-|
T Consensus 231 ~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g 299 (371)
T PRK09240 231 RTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDVEISLSTR 299 (371)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCcccccEEecC
Confidence 99998888877776421 2355556778877 44 335566655444443 3445554443
No 68
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=98.92 E-value=7.3e-08 Score=96.35 Aligned_cols=144 Identities=21% Similarity=0.317 Sum_probs=97.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCChhhHHHHHHHh
Q 043340 112 LTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLNLKSVLEAHRCL 185 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln~~~v~~~i~~l 185 (327)
...+|.++.|||++|.||..+.. |..|..++++|++++..+.+ .+.+.|+|+| +|+|+.+.+.+.++++.+
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~---~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVD---QGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHH---CCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 44668889999999999998643 44578889999999988765 3678999987 588877656788888888
Q ss_pred hhccCCCCccEEEEc---CCcHHH-HHHHHhcC-CCcceeec--------------------------------------
Q 043340 186 NKDVQIGQRMITIST---VGVPNT-IKKLASYK-LQSTLAIR-------------------------------------- 222 (327)
Q Consensus 186 ~~~~gi~~r~itisT---nG~~~~-i~~L~~~~-~~v~lavS-------------------------------------- 222 (327)
.+.-++ +.+.+++ ..+.+. ++.+.+.+ .-..+.++
T Consensus 212 ~~~~~i--~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~ 289 (430)
T TIGR01125 212 GKVGGI--YWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLR 289 (430)
T ss_pred HhcCCc--cEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 532123 2333322 223333 33343331 00111111
Q ss_pred ---ccCC-CCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 223 ---SAGV-NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 223 ---I~Gv-ND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
|-|+ .++++++++..+|++.++ ...+++.+|.|.++..
T Consensus 290 ~~~I~G~PgET~e~~~~t~~fl~~~~-~~~~~~~~~sp~pGT~ 331 (430)
T TIGR01125 290 TTFIVGFPGETEEDFQELLDFVEEGQ-FDRLGAFTYSPEEGTD 331 (430)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcC-CCEEeeeeccCCCCCc
Confidence 3332 578899999999999986 4688999999998764
No 69
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=98.88 E-value=8.2e-08 Score=96.38 Aligned_cols=141 Identities=18% Similarity=0.293 Sum_probs=94.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-----------------CCCc
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-----------------GEPM 172 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-----------------GEPl 172 (327)
+...++.++.|||++|.||..+.. |..|..++++|++++..+.+ .+++.|+|+|. |+|+
T Consensus 138 ~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~---~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~ 214 (440)
T PRK14862 138 RHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVK---AGVKELLVISQDTSAYGVDVKYRTGFWNGRPV 214 (440)
T ss_pred CcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHH---CCCceEEEEecChhhhccccccccccccccch
Confidence 345677889999999999998643 44578899999999988754 36788888852 3343
Q ss_pred CChhhHHHHHHHhhhccCCCCccEEE---EcCCcHHHHHHHHhcC-CCcceeec--------------------------
Q 043340 173 LNLKSVLEAHRCLNKDVQIGQRMITI---STVGVPNTIKKLASYK-LQSTLAIR-------------------------- 222 (327)
Q Consensus 173 ln~~~v~~~i~~l~~~~gi~~r~iti---sTnG~~~~i~~L~~~~-~~v~lavS-------------------------- 222 (327)
.+.+.++++.+.+ .|+ .+.+ .+++..+.+-++...+ .-..+.++
T Consensus 215 --~~~~~~Ll~~l~~-~~~---~~r~~~~~p~~~~dell~~m~~g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~ 288 (440)
T PRK14862 215 --KTRMTDLCEALGE-LGA---WVRLHYVYPYPHVDEVIPLMAEGKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIK 288 (440)
T ss_pred --hhHHHHHHHHHHh-cCC---EEEEecCCCCcCCHHHHHHHhcCCCccccccccccCCHHHHHhcCCCCCHHHHHHHHH
Confidence 2568888887754 355 3443 3345444433333222 10022221
Q ss_pred ---------------ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 223 ---------------SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 223 ---------------I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
|=| ..+++++++++.+|++.++ ...+++.+|.|.++.+
T Consensus 289 ~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~-~d~~~~f~ysP~pGT~ 342 (440)
T PRK14862 289 KWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ-LDRVGCFKYSPVEGAT 342 (440)
T ss_pred HHHHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcC-CCeeeeEeecCCCCCc
Confidence 222 3477899999999999986 4688999999998764
No 70
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.87 E-value=1.2e-07 Score=91.41 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=95.1
Q ss_pred ecCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCCh-hhHHHHHHHhhhccCCCCc
Q 043340 118 SQVGCPLRCSFCATGKGGFSRN--LSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNL-KSVLEAHRCLNKDVQIGQR 194 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~~~~r~--lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~-~~v~~~i~~l~~~~gi~~r 194 (327)
.+.+|++.|.||+...+-...+ ++.+++-..+....+ .+.+.+|.|+| |+||+-. ..+..+++.+++--.+ +
T Consensus 117 ~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~--hPeI~eVllSG-GDPL~ls~~~L~~ll~~L~~IpHv--~ 191 (369)
T COG1509 117 VTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAA--HPEIREVLLSG-GDPLSLSDKKLEWLLKRLRAIPHV--K 191 (369)
T ss_pred ecCcccceeeecccccccccccccCCHHHHHHHHHHHHc--CchhheEEecC-CCccccCHHHHHHHHHHHhcCCce--e
Confidence 3589999999999965533322 455555444433332 36799999999 9999854 4466666666532111 2
Q ss_pred cEEEEcCCcH--H-----HHHHHHhc-CCCcce-------------------------------eecccCCCCcHHHHHH
Q 043340 195 MITISTVGVP--N-----TIKKLASY-KLQSTL-------------------------------AIRSAGVNDQVEHAVE 235 (327)
Q Consensus 195 ~itisTnG~~--~-----~i~~L~~~-~~~v~l-------------------------------avSI~GvND~~e~a~~ 235 (327)
.|.+.|=..+ | .+-++... ..++.+ +|-++||||+++-+.+
T Consensus 192 iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~ 271 (369)
T COG1509 192 IIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKE 271 (369)
T ss_pred EEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHH
Confidence 3455554431 2 22222222 122111 2229999999988777
Q ss_pred HHHHHHhcCCcceEEEEeccC-----CCC-CCCCCCcHHHH---HHHHHHHHhCCCeEEEcCCCCcc
Q 043340 236 LAELLHEWGRGHHVNLIPFNP-----IEG-SDYQRPYKKAV---LAFAGALESHKITTSIRQTRGLD 293 (327)
Q Consensus 236 L~~~l~~l~~~~~vnLIp~np-----~~~-~~~~~p~~e~i---~~f~~~L~~~gi~v~vR~~~G~d 293 (327)
|.+-+...+ +.||+- ..| ..|..|..+-+ +..+..+..+.+++.++.-.|.-
T Consensus 272 L~~~L~~~g------V~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~lr~~~SG~~~P~~v~d~pgg~ 332 (369)
T COG1509 272 LSRALFDAG------VKPYYLHQLDLVQGAAHFRVPIAEGLQIVEELRGRTSGYAVPTLVVDIPGGG 332 (369)
T ss_pred HHHHHHHcC------CcceEEeccCccCCccceeccHHHHHHHHHHHHHhCCCcccceeEEecCCCC
Confidence 776555443 466653 233 45776665443 44444455566777888655543
No 71
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.87 E-value=1.4e-07 Score=95.24 Aligned_cols=145 Identities=19% Similarity=0.315 Sum_probs=98.5
Q ss_pred eeEEEEEecCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGK-GGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~-~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln~~~v~~~i~~ 184 (327)
+..+++..|.|||++|.||..+. .|..|..++++|++++..+.+ .+++.|+|+| +|+|+.+.+.+.++++.
T Consensus 154 ~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~---~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~ 230 (459)
T PRK14338 154 PVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAA---RGAKEITLLGQIVDSYGHDLPGRPDLADLLEA 230 (459)
T ss_pred ceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHH---CCCeEEEEeeecCCCcccccCChHHHHHHHHH
Confidence 56778888999999999999864 345588999999999988765 4689999999 48887654567888888
Q ss_pred hhhccCCCCccEEEEc-CC--cHHH-HHHHHhcC--C-Ccce------------------------------------ee
Q 043340 185 LNKDVQIGQRMITIST-VG--VPNT-IKKLASYK--L-QSTL------------------------------------AI 221 (327)
Q Consensus 185 l~~~~gi~~r~itisT-nG--~~~~-i~~L~~~~--~-~v~l------------------------------------av 221 (327)
+.+..|+ .++.+.| +. +.+. ++.|.+.+ . .+++ .+
T Consensus 231 l~~~~gi--~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i 308 (459)
T PRK14338 231 VHEIPGL--ERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSL 308 (459)
T ss_pred HHhcCCc--ceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 7643344 2455543 33 2222 33333321 0 0111 11
Q ss_pred c---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 R---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 S---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ |-| ..++.+++++..++++.++ ...+++.+|.|.++++
T Consensus 309 ~~d~IvG~PgET~ed~~~ti~~l~~l~-~~~v~i~~ysp~pGT~ 351 (459)
T PRK14338 309 TTDIIVGHPGETEEQFQRTYDLLEEIR-FDKVHIAAYSPRPGTL 351 (459)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHcC-CCEeEEEecCCCCCCh
Confidence 1 112 2467899999999999986 4678999999988753
No 72
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=98.81 E-value=1.7e-07 Score=91.14 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=87.6
Q ss_pred EEecCCCCCCCCCCCCCCC-C--CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-CCcCChhhHHHHHHHhhhc-cC
Q 043340 116 VSSQVGCPLRCSFCATGKG-G--FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-EPMLNLKSVLEAHRCLNKD-VQ 190 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~~~-~--~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-EPlln~~~v~~~i~~l~~~-~g 190 (327)
+.++.+|+.+|.||..... + ....++++||++++....+ .+++.|.|+| | +|....+.+.++++.+++. .+
T Consensus 43 i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~---~G~~~i~l~g-G~~p~~~~~~~~~i~~~Ik~~~~~ 118 (343)
T TIGR03551 43 INFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK---AGATEVCIQG-GIHPDLDGDFYLDILRAVKEEVPG 118 (343)
T ss_pred cccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH---CCCCEEEEEe-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 4446899999999987532 1 1134899999999987765 3789999998 6 7888888899999999754 24
Q ss_pred CCCccEEEE----------cCCcH--HHHHHHHhcCCCcce---------------e---ec------------------
Q 043340 191 IGQRMITIS----------TVGVP--NTIKKLASYKLQSTL---------------A---IR------------------ 222 (327)
Q Consensus 191 i~~r~itis----------TnG~~--~~i~~L~~~~~~v~l---------------a---vS------------------ 222 (327)
+ ++... |+|.. +.+++|.++|++-.. . ++
T Consensus 119 i---~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 119 M---HIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPT 195 (343)
T ss_pred c---eEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 4 55432 56763 357888887643110 0 11
Q ss_pred ----ccCCCCcHHHHHHHHHHHHhcC
Q 043340 223 ----SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 223 ----I~GvND~~e~a~~L~~~l~~l~ 244 (327)
|=|..++.++..+.+.+++.++
T Consensus 196 ~s~~i~G~~Et~ed~~~~l~~lr~l~ 221 (343)
T TIGR03551 196 TATIMYGHVETPEHWVDHLLILREIQ 221 (343)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHhh
Confidence 5677788999999999999875
No 73
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=98.79 E-value=7.4e-07 Score=85.30 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=116.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcC---ChhhHHHHHHHhh
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PML---NLKSVLEAHRCLN 186 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Pll---n~~~v~~~i~~l~ 186 (327)
+...++..+.||+.+|.||..+...-....+++|+++++..+.+ .+++.|+++| |+ +-+ ..+.+.++++.++
T Consensus 62 ~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~---~GlkevvLTs-v~~ddl~d~g~~~l~~li~~I~ 137 (302)
T TIGR00510 62 GTATFMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD---MGLKYVVITS-VDRDDLEDGGASHLAECIEAIR 137 (302)
T ss_pred CEEEEEecCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEe-ecCCCcccccHHHHHHHHHHHH
Confidence 46667778899999999999864422233578999888877664 4799999999 54 322 2356888888886
Q ss_pred hc-cCCCCccEEEEcC---CcHHHHHHHHhcCCCc---c---------------------------------eeec---c
Q 043340 187 KD-VQIGQRMITISTV---GVPNTIKKLASYKLQS---T---------------------------------LAIR---S 223 (327)
Q Consensus 187 ~~-~gi~~r~itisTn---G~~~~i~~L~~~~~~v---~---------------------------------lavS---I 223 (327)
+. .++ +|.+.|. |..+.++.+.+.+.++ + +.+. |
T Consensus 138 ~~~p~i---~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiI 214 (302)
T TIGR00510 138 EKLPNI---KIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIM 214 (302)
T ss_pred hcCCCC---EEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEE
Confidence 53 345 6777663 4344566666654320 0 1111 5
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC--C-CCCCcHHHHHHHHHHHHhCCCeE-----EEcCCCC
Q 043340 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS--D-YQRPYKKAVLAFAGALESHKITT-----SIRQTRG 291 (327)
Q Consensus 224 ~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~--~-~~~p~~e~i~~f~~~L~~~gi~v-----~vR~~~G 291 (327)
=|+.++++++.+..+++++++ ...+.+.+|-..... + -+-..+++-+.+.++..+.|... .||.|.-
T Consensus 215 VGlGETeee~~etl~~Lrelg-~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~vrssy~ 289 (302)
T TIGR00510 215 VGLGETNEEIKQTLKDLRDHG-VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGPFVRSSYH 289 (302)
T ss_pred EECCCCHHHHHHHHHHHHhcC-CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheEecccchhhhh
Confidence 577889999999999999987 467777776644222 1 13355678888889999999863 3665543
No 74
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=98.78 E-value=5.4e-07 Score=89.61 Aligned_cols=145 Identities=23% Similarity=0.379 Sum_probs=94.2
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln~~~v~~~i~~ 184 (327)
+....|.++.|||++|.||..+.. |..|..++++|++++....+ .+++.|+|+| +|.-+.+...+.++++.
T Consensus 137 ~~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~---~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~ 213 (414)
T TIGR01579 137 HTRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVA---KGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQ 213 (414)
T ss_pred CeEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHH---CCCceEEEeeEccchhccCCCCCCcHHHHHHH
Confidence 345567778999999999998643 45678999999999987654 4789999987 23222222457777777
Q ss_pred hhhccCCCCccEEEEcCC---cHHH-HHHHHhcC-C--Ccceeec-----------------------------------
Q 043340 185 LNKDVQIGQRMITISTVG---VPNT-IKKLASYK-L--QSTLAIR----------------------------------- 222 (327)
Q Consensus 185 l~~~~gi~~r~itisTnG---~~~~-i~~L~~~~-~--~v~lavS----------------------------------- 222 (327)
+.+..++ .++.+++.- +.+. ++.+.+.+ . .+++.+-
T Consensus 214 l~~~~~~--~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i 291 (414)
T TIGR01579 214 ILQIPGI--KRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAF 291 (414)
T ss_pred HhcCCCC--cEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 7532243 245654321 1233 44444332 1 1122111
Q ss_pred ----ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 223 ----SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 223 ----I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
|-| ..++++++++..+|++.++ ...+++.+|.|.++++
T Consensus 292 ~~~~IvG~PgET~ed~~~tl~~i~~~~-~~~~~~~~~sp~pGT~ 334 (414)
T TIGR01579 292 GTDIIVGFPGESEEDFQETLRMVKEIE-FSHLHIFPYSARPGTP 334 (414)
T ss_pred eeeEEEECCCCCHHHHHHHHHHHHhCC-CCEEEeeecCCCCCCc
Confidence 222 2478999999999999986 4689999999998764
No 75
>PRK12928 lipoyl synthase; Provisional
Probab=98.77 E-value=1.1e-06 Score=83.73 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=112.6
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC----CcCChhhHHHHHHHhh
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE----PMLNLKSVLEAHRCLN 186 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE----Plln~~~v~~~i~~l~ 186 (327)
+...++..+.||+.+|.||..+. +....++++|+++.+....+ .+++.|+++| |. |-...+.+.++++.++
T Consensus 59 ~~~tfv~is~gC~~~C~FCa~~~-g~~~~~~~eei~~~a~~~~~---~G~keivitg-~~~dDl~d~g~~~~~ell~~Ik 133 (290)
T PRK12928 59 GTATFLIMGSICTRRCAFCQVDK-GRPMPLDPDEPERVAEAVAA---LGLRYVVLTS-VARDDLPDGGAAHFVATIAAIR 133 (290)
T ss_pred CEEEEEEecccccCcCCCCCccC-CCCCCCCHHHHHHHHHHHHH---CCCCEEEEEE-EeCCcccccCHHHHHHHHHHHH
Confidence 45556667899999999999876 44566899999988887654 3689999999 53 3334456788888886
Q ss_pred hcc-CCCCccEEEEcCC----cHHHHHHHHhcCCCc---c---------------------------------eeec---
Q 043340 187 KDV-QIGQRMITISTVG----VPNTIKKLASYKLQS---T---------------------------------LAIR--- 222 (327)
Q Consensus 187 ~~~-gi~~r~itisTnG----~~~~i~~L~~~~~~v---~---------------------------------lavS--- 222 (327)
+.. ++ +|.+-|-. ..+.+.+|.+++..+ + +.+.
T Consensus 134 ~~~p~~---~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~i 210 (290)
T PRK12928 134 ARNPGT---GIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGL 210 (290)
T ss_pred hcCCCC---EEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccE
Confidence 532 33 56554432 234466666553210 0 1111
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHhCCCeE
Q 043340 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGALESHKITT 284 (327)
Q Consensus 223 I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L~~~gi~v 284 (327)
|=|+.++++++.+..++++.++ ...+++.+|-+.....+ +-..+++-+++.++..+.|...
T Consensus 211 IvG~GET~ed~~etl~~Lrel~-~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~ 274 (290)
T PRK12928 211 MLGLGETEDEVIETLRDLRAVG-CDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSH 274 (290)
T ss_pred EEeCCCCHHHHHHHHHHHHhcC-CCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCce
Confidence 5578899999999999999987 47888888875432221 2345677888888888899864
No 76
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=98.76 E-value=2.4e-07 Score=89.57 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=93.7
Q ss_pred EEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCC-cCCh------------hhHHH
Q 043340 115 CVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP-MLNL------------KSVLE 180 (327)
Q Consensus 115 cVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEP-lln~------------~~v~~ 180 (327)
.+..+.+|+.+|.||..... +..+.++++||++++....+ .+++.|.|+| ||| ...+ ..+.+
T Consensus 15 ~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~---~G~~ei~l~g-G~~p~~~~~~~~~~~~~~g~~~~~~ 90 (336)
T PRK06245 15 FIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGAD---AGCTEALFTF-GEVPDESYERIKEQLAEMGYSSILE 90 (336)
T ss_pred eeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHH---CCCCEEEEec-CCCCccchhhhhhhhhhhhHHHHHH
Confidence 45678999999999987542 33458999999999988765 4788999999 998 4442 22344
Q ss_pred HHHHhhh---ccCCCCccEEEEcCCcH-HHHHHHHhcCCCcce-------------------------------------
Q 043340 181 AHRCLNK---DVQIGQRMITISTVGVP-NTIKKLASYKLQSTL------------------------------------- 219 (327)
Q Consensus 181 ~i~~l~~---~~gi~~r~itisTnG~~-~~i~~L~~~~~~v~l------------------------------------- 219 (327)
.++.+.+ ..|+ ...++...+. +.++.|.+.+..+.+
T Consensus 91 ~i~~i~~~~~~~g~---~~~~~~~~lt~e~i~~Lk~ag~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi 167 (336)
T PRK06245 91 YLYDLCELALEEGL---LPHTNAGILTREEMEKLKEVNASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKI 167 (336)
T ss_pred HHHHHHHHHhhcCC---CccccCCCCCHHHHHHHHHhCCCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCC
Confidence 4433321 1222 1222111122 234444442211000
Q ss_pred eec---ccCCCCcHHHHHHHHHHHHhcCC----cceEEEEeccCCCCCC---CCCCcHHHHHHHHHHHHh
Q 043340 220 AIR---SAGVNDQVEHAVELAELLHEWGR----GHHVNLIPFNPIEGSD---YQRPYKKAVLAFAGALES 279 (327)
Q Consensus 220 avS---I~GvND~~e~a~~L~~~l~~l~~----~~~vnLIp~np~~~~~---~~~p~~e~i~~f~~~L~~ 279 (327)
.++ |=|+.++.++..+...+++.++. ...+.+.||.|.++.+ ...++.++..++....+.
T Consensus 168 ~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl 237 (336)
T PRK06245 168 PFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARL 237 (336)
T ss_pred ceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHH
Confidence 000 44667788888887777776531 2457778888887653 345677776665555443
No 77
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.73 E-value=8.2e-07 Score=90.62 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=93.7
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-----CCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-----GEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-----GEPlln~~~v~~~i~~ 184 (327)
+....|.++.|||++|.||..+.. |..|..++++|++++....+ .+++.|+|+|. |--+.+...+.++++.
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~---~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~ 232 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVD---EGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRA 232 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHH---CCCceEEEEeecccccccCCCCHHHHHHHHHH
Confidence 456788889999999999999753 45578899999999988765 36888888772 3223343456666666
Q ss_pred hhhccCCCCccEEEEcC---CcHHH-HHHHHhcC---CCcceee------------------------------------
Q 043340 185 LNKDVQIGQRMITISTV---GVPNT-IKKLASYK---LQSTLAI------------------------------------ 221 (327)
Q Consensus 185 l~~~~gi~~r~itisTn---G~~~~-i~~L~~~~---~~v~lav------------------------------------ 221 (327)
+.+..|+ .+|.+++. .+.+. ++.+.+.+ ..+++.+
T Consensus 233 l~~i~~l--~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i 310 (502)
T PRK14326 233 CGEIDGL--ERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAI 310 (502)
T ss_pred HHhcCCc--cEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 6432233 24666542 12232 44444432 1111111
Q ss_pred c---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 R---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 S---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ |=| ..++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 311 ~~~~IvGfPgET~edf~~Tl~~i~~~~-~~~~~~f~~sp~pGT~ 353 (502)
T PRK14326 311 TTDIIVGFPGETEEDFQATLDVVREAR-FSSAFTFQYSKRPGTP 353 (502)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHcC-CCEEEEEeecCCCCCh
Confidence 1 222 2477899999999999876 3568888899988764
No 78
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.72 E-value=8.2e-07 Score=89.07 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=94.2
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCCh-----hhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNL-----KSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~-----~~v~~~i~~ 184 (327)
+....+..+.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|+| ...+.+. ..+.++++.
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~---~g~~eI~l~d-~~~~~y~~~~~~~~~~~Ll~~ 220 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVD---DGVKEIHLIG-QNVTAYGKDIGDVPFSELLYA 220 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHH---CCCeEEEEee-eccccccCCCCCCCHHHHHHH
Confidence 456778888999999999998743 44578899999999988765 3688999998 5555421 245666666
Q ss_pred hhhccCCCCccEEEEcCC---cHHH-HHHHHhcC--C-Ccce------------------------------------ee
Q 043340 185 LNKDVQIGQRMITISTVG---VPNT-IKKLASYK--L-QSTL------------------------------------AI 221 (327)
Q Consensus 185 l~~~~gi~~r~itisTnG---~~~~-i~~L~~~~--~-~v~l------------------------------------av 221 (327)
+.+..|+ .++.+++.- +.+. ++.+.+.+ . .+++ .+
T Consensus 221 l~~~~g~--~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i 298 (437)
T PRK14331 221 VAEIDGV--ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITF 298 (437)
T ss_pred HhcCCCc--cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 6433343 256665532 2232 34443331 0 1111 11
Q ss_pred c------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 R------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 S------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ +|| ++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 299 ~~d~IvG~Pg--ET~ed~~~tl~~l~~l~-~~~i~~f~~sp~pGT~ 341 (437)
T PRK14331 299 STDIIVGFPT--ETEEDFEETLDVLKKVE-FEQVFSFKYSPRPGTP 341 (437)
T ss_pred ecCEEEECCC--CCHHHHHHHHHHHHhcC-cceeeeeEecCCCCcc
Confidence 1 444 67899999999999987 3678888999988764
No 79
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.70 E-value=7.2e-07 Score=89.83 Aligned_cols=143 Identities=19% Similarity=0.287 Sum_probs=92.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCCh---hhHHHHHHHhhh
Q 043340 112 LTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNL---KSVLEAHRCLNK 187 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~---~~v~~~i~~l~~ 187 (327)
...++..+.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|.| ..-..+. ..+.++++.+.+
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~---~G~kei~l~~-~~~~~y~~~~~~l~~Ll~~l~~ 229 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQE---KGIRQVTLLG-QNVNSYKEQSTDFAGLIQMLLD 229 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH---CCCeEEEEec-ccCCcccCCcccHHHHHHHHhc
Confidence 45678888999999999999753 44588899999999988764 4789999998 4443332 235555555533
Q ss_pred ccCCCCccEEEEcC---CcHHH-HHHHHhcC--C-Ccce------------------------------------ee--c
Q 043340 188 DVQIGQRMITISTV---GVPNT-IKKLASYK--L-QSTL------------------------------------AI--R 222 (327)
Q Consensus 188 ~~gi~~r~itisTn---G~~~~-i~~L~~~~--~-~v~l------------------------------------av--S 222 (327)
..++ .+|.+++. .+.+. ++.+.+.+ . .+++ .+ +
T Consensus 230 ~~~~--~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td 307 (449)
T PRK14332 230 ETTI--ERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTD 307 (449)
T ss_pred CCCc--ceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2233 35666552 22233 33333322 0 0111 11 1
Q ss_pred -ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 223 -SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 223 -I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
|=| ..++++++++..+|++.++ ...+++.+|.|.++..
T Consensus 308 ~IvGfPgET~edf~~tl~~v~~l~-~~~~~~f~ys~~~GT~ 347 (449)
T PRK14332 308 IIVGFPNETEEEFEDTLAVVREVQ-FDMAFMFKYSEREGTM 347 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhCC-CCEEEEEEecCCCCCh
Confidence 223 2477899999999999987 4689999999998764
No 80
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.70 E-value=1.4e-06 Score=87.50 Aligned_cols=141 Identities=19% Similarity=0.273 Sum_probs=93.3
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----C-CCCcCChhhHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----M-GEPMLNLKSVLEAHR 183 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~-GEPlln~~~v~~~i~ 183 (327)
+.++.+..+.|||.+|.||..+.. +..+..++++|++++....+ .+++.|+|+| + |++... ..+.++++
T Consensus 137 ~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~---~G~keI~l~g~~~~~yG~d~~~~-~~~~~Ll~ 212 (440)
T PRK14334 137 KLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKA---AGVQEVTLLGQNVNSYGVDQPGF-PSFAELLR 212 (440)
T ss_pred CeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHH---CCCeEEEEEeccccccccCCCCc-CCHHHHHH
Confidence 678889999999999999998753 34457789999999988754 3678888876 1 343221 34556666
Q ss_pred HhhhccCCCCccEEEEc-CC--cHHH-HHHHHhcC--C-Cccee------------------------------------
Q 043340 184 CLNKDVQIGQRMITIST-VG--VPNT-IKKLASYK--L-QSTLA------------------------------------ 220 (327)
Q Consensus 184 ~l~~~~gi~~r~itisT-nG--~~~~-i~~L~~~~--~-~v~la------------------------------------ 220 (327)
.+.+ .++ .++.+++ +. +.+. ++.|.+.+ . .+++.
T Consensus 213 ~l~~-~~i--~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~ 289 (440)
T PRK14334 213 LVGA-SGI--PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVV 289 (440)
T ss_pred HHHh-cCC--cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 6643 354 2466654 22 2233 44444421 1 11111
Q ss_pred ec------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 221 IR------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 221 vS------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
++ +|| ++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 290 i~~d~IvG~Pg--Et~ed~~~tl~~i~~l~-~~~i~~f~ysp~pGT~ 333 (440)
T PRK14334 290 LSTDIIVGFPG--ETEEDFQETLSLYDEVG-YDSAYMFIYSPRPGTP 333 (440)
T ss_pred EEEeEEEECCC--CCHHHHHHHHHHHHhcC-CCEeeeeEeeCCCCCh
Confidence 11 455 67899999999999986 4689999999998764
No 81
>PLN02389 biotin synthase
Probab=98.69 E-value=1.7e-06 Score=85.27 Aligned_cols=151 Identities=16% Similarity=0.272 Sum_probs=103.4
Q ss_pred cCCCCCCCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHhcCCcceEEEe-----eCCCCcCChhhHHHHHHHhhhc
Q 043340 119 QVGCPLRCSFCATGKG---GF--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFM-----GMGEPMLNLKSVLEAHRCLNKD 188 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~---~~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~-----G~GEPlln~~~v~~~i~~l~~~ 188 (327)
+.+|+.+|.||..... +. .+.++++||++.+....+ .+++.+.+. +.|||.. ++.+.++++.++ .
T Consensus 90 T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~---~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~ik-~ 164 (379)
T PLN02389 90 TGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKE---AGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEIR-G 164 (379)
T ss_pred cCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHH---cCCCEEEEEecccCCCCChhH-HHHHHHHHHHHh-c
Confidence 6899999999987532 22 245999999999887654 356666653 2366664 588999999996 4
Q ss_pred cCCCCccEEEEcCCcH--HHHHHHHhcCCC---cceeec----------------------------------ccCCCCc
Q 043340 189 VQIGQRMITISTVGVP--NTIKKLASYKLQ---STLAIR----------------------------------SAGVNDQ 229 (327)
Q Consensus 189 ~gi~~r~itisTnG~~--~~i~~L~~~~~~---v~lavS----------------------------------I~GvND~ 229 (327)
.++ .++ .|+|+. +.+++|.+.|++ .++.-+ |-|..++
T Consensus 165 ~~l---~i~-~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt 240 (379)
T PLN02389 165 MGM---EVC-CTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEA 240 (379)
T ss_pred CCc---EEE-ECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCC
Confidence 566 565 478874 468888887653 111100 7788999
Q ss_pred HHHHHHHHHHHHhcCC-cceEEEEeccCCCCCCC---CCCcHHHHHHHHHHHH
Q 043340 230 VEHAVELAELLHEWGR-GHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGALE 278 (327)
Q Consensus 230 ~e~a~~L~~~l~~l~~-~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L~ 278 (327)
.+|..+++.+++.++. ...|.+-+|+|.++.++ ++++.++..+...+.+
T Consensus 241 ~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~R 293 (379)
T PLN02389 241 EEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATAR 293 (379)
T ss_pred HHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999988741 24466666778877653 3566766655555544
No 82
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=98.69 E-value=8.8e-07 Score=88.52 Aligned_cols=145 Identities=21% Similarity=0.332 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGK-GGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~-~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln~~~v~~~i~~ 184 (327)
+....+.++.|||++|.||..+. .+..|..++++|++++..+.+ .+++.|+|+| +|.++.+...+.++++.
T Consensus 138 ~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~---~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 214 (429)
T TIGR00089 138 KTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVS---KGVKEIVLLGQNVGAYGKDLKGETNLADLLRE 214 (429)
T ss_pred CeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHH---CCCceEEEEeeccccccCCCCCCcCHHHHHHH
Confidence 45567878899999999999864 345678899999999988765 3688999987 35554433457777777
Q ss_pred hhhccCCCCccEEEEcC---CcHHH-HHHHHhcC--C-Cccee------------------------------------e
Q 043340 185 LNKDVQIGQRMITISTV---GVPNT-IKKLASYK--L-QSTLA------------------------------------I 221 (327)
Q Consensus 185 l~~~~gi~~r~itisTn---G~~~~-i~~L~~~~--~-~v~la------------------------------------v 221 (327)
+.+..|+ ..+.+++. .+.+. ++.+.+.+ . .+++. +
T Consensus 215 l~~~~g~--~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i 292 (429)
T TIGR00089 215 LSKIDGI--ERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAI 292 (429)
T ss_pred HhcCCCC--CEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 7532233 24666442 22233 33333331 1 11111 1
Q ss_pred c---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 R---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 S---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ |=| .+++++++.+..+|++.++ ...+++.+|.|.++++
T Consensus 293 ~~~~IvG~PgET~ed~~~tl~~i~~~~-~~~~~~~~~sp~pgT~ 335 (429)
T TIGR00089 293 TTDIIVGFPGETEEDFEETLDLVEEVK-FDKLHSFIYSPRPGTP 335 (429)
T ss_pred EeeEEEECCCCCHHHHHHHHHHHHhcC-CCEeeccccCCCCCCc
Confidence 1 223 2578899999999999986 4689999999988764
No 83
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.68 E-value=1.5e-06 Score=88.82 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=96.2
Q ss_pred eeEEEEEecCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCC-hhhHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGK-GGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLN-LKSVLEAHR 183 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~-~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln-~~~v~~~i~ 183 (327)
+...+|..+.|||.+|.||..+. .|..|..++++|++++..+.+ .+++.|+|.| +|..+.+ ...+.++++
T Consensus 211 ~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~---~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~ 287 (509)
T PRK14327 211 NIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAR---QGYKEITLLGQNVNAYGKDFEDIEYGLGDLMD 287 (509)
T ss_pred CeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHH---CCCcEEEEEeeccccCcccccccchHHHHHHH
Confidence 57789999999999999999864 345678999999999988764 3688899988 2433332 123666777
Q ss_pred HhhhccCCCCccEEEEcCC---cHHH-HHHHHhcCC---Ccceee-----------------------------------
Q 043340 184 CLNKDVQIGQRMITISTVG---VPNT-IKKLASYKL---QSTLAI----------------------------------- 221 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTnG---~~~~-i~~L~~~~~---~v~lav----------------------------------- 221 (327)
.+.+ .++ .++.++|.- +.+. ++.+.+.+. .+++.+
T Consensus 288 ~I~~-~~i--~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~ 364 (509)
T PRK14327 288 EIRK-IDI--PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVA 364 (509)
T ss_pred HHHh-CCC--ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 7653 344 357776632 2223 444444321 111111
Q ss_pred -c------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 -R------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 -S------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ +|| ++++++++..+|++.++ ...+++.+|.|.++++
T Consensus 365 i~tdiIvGfPg--ET~edf~~Tl~~v~~l~-~d~~~~f~ysprpGT~ 408 (509)
T PRK14327 365 LTTDIIVGFPN--ETDEQFEETLSLYREVG-FDHAYTFIYSPREGTP 408 (509)
T ss_pred EeeeEEEeCCC--CCHHHHHHHHHHHHHcC-CCeEEEeeeeCCCCCc
Confidence 1 444 67899999999999986 4678999999998865
No 84
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.68 E-value=1.4e-06 Score=86.87 Aligned_cols=142 Identities=16% Similarity=0.239 Sum_probs=94.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC------ChhhHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML------NLKSVLEAHR 183 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll------n~~~v~~~i~ 183 (327)
+...++..+.|||.+|.||..+.. |..|..++++|++++..+.+ .+++.|+|+| ..-.. ..+.+.++++
T Consensus 123 ~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~---~G~~ei~l~~-~~~~~yg~d~~~~~~l~~Ll~ 198 (418)
T PRK14336 123 PVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVR---RGSREVVLLG-QNVDSYGHDLPEKPCLADLLS 198 (418)
T ss_pred CeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHH---CCCeEEEEEe-cCccccccCCCCcccHHHHHH
Confidence 467788889999999999998753 45588999999999988765 4789999998 44322 1234677777
Q ss_pred HhhhccCCCCccEEEEcCC---cHHH-HHHHHhcC---CCcc------------------------------------ee
Q 043340 184 CLNKDVQIGQRMITISTVG---VPNT-IKKLASYK---LQST------------------------------------LA 220 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTnG---~~~~-i~~L~~~~---~~v~------------------------------------la 220 (327)
.+.+..|+ .+|.+++.- +.+. ++.+.+.+ ..++ +.
T Consensus 199 ~l~~~~~~--~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~ 276 (418)
T PRK14336 199 ALHDIPGL--LRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDIS 276 (418)
T ss_pred HHHhcCCc--cEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCE
Confidence 66532233 256665422 2222 33333321 0011 11
Q ss_pred ec------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 221 IR------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 221 vS------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
++ +|| ++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 277 i~~d~IvGfPG--ET~edf~~tl~fi~~~~-~~~~~v~~ysp~pGT~ 320 (418)
T PRK14336 277 LQTDLIVGFPS--ETEEQFNQSYKLMADIG-YDAIHVAAYSPRPQTV 320 (418)
T ss_pred EEEEEEEECCC--CCHHHHHHHHHHHHhcC-CCEEEeeecCCCCCCh
Confidence 11 444 67899999999999986 4678999999998753
No 85
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.66 E-value=1.4e-06 Score=87.67 Aligned_cols=141 Identities=16% Similarity=0.291 Sum_probs=94.0
Q ss_pred eeEEEEEecCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-----CCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGK-GGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-----GEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~-~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-----GEPlln~~~v~~~i~~ 184 (327)
+...+|.++.|||.+|.||..+. .|..|..++++|++++..+.+ .+++.|+|.|. |.+... ..+.++++.
T Consensus 148 ~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~---~G~~ei~l~~~~~~~y~d~~~~-~~l~~Ll~~ 223 (445)
T PRK14340 148 SISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAE---AGYREITLLGQNVNSYSDPEAG-ADFAGLLDA 223 (445)
T ss_pred CcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHH---CCCeEEEEeecccchhhccCCC-chHHHHHHH
Confidence 45678888999999999999874 345688999999999988764 46899999881 333322 235666666
Q ss_pred hhhc-cCCCCccEEEEcC---CcHHH-HHHHHhcC--C-Ccce------------------------------------e
Q 043340 185 LNKD-VQIGQRMITISTV---GVPNT-IKKLASYK--L-QSTL------------------------------------A 220 (327)
Q Consensus 185 l~~~-~gi~~r~itisTn---G~~~~-i~~L~~~~--~-~v~l------------------------------------a 220 (327)
+.+. .++ +|.+++. .+.+. ++.+.+.+ . .+++ .
T Consensus 224 l~~~~~~~---rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~ 300 (445)
T PRK14340 224 VSRAAPEM---RIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVT 300 (445)
T ss_pred HhhcCCCc---EEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 6432 122 5666553 22233 44444321 1 0111 1
Q ss_pred ec------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 221 IR------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 221 vS------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
++ +|| ++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 301 i~td~IvGfPg--ET~edf~~tl~~~~~~~-~~~~~~f~~sp~pGT~ 344 (445)
T PRK14340 301 LSTDLIAGFCG--ETEEDHRATLSLMEEVR-FDSAFMFYYSVRPGTL 344 (445)
T ss_pred EeccEEEECCC--CCHHHHHHHHHHHHhcC-CCEEeeEEecCCCCCh
Confidence 11 444 67899999999999986 4688999999998864
No 86
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.63 E-value=1.9e-06 Score=86.34 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=91.2
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln~~~v~~~i~~ 184 (327)
+...++..|.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|.| +|-.+.+.+.+.++++.
T Consensus 139 ~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~---~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~ 215 (434)
T PRK14330 139 KHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAK---QGYREVTFLGQNVDAYGKDLKDGSSLAKLLEE 215 (434)
T ss_pred CcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHH---CCCcEEEEEEecccccccCCCCCccHHHHHHH
Confidence 355678888999999999998643 44578899999999987654 3688899977 23333333456666665
Q ss_pred hhhccCCCCccEEEEcC---CcHHH-HHHHHhcC---CCccee------------------------------------e
Q 043340 185 LNKDVQIGQRMITISTV---GVPNT-IKKLASYK---LQSTLA------------------------------------I 221 (327)
Q Consensus 185 l~~~~gi~~r~itisTn---G~~~~-i~~L~~~~---~~v~la------------------------------------v 221 (327)
+.+..++. ++.+.+. .+.+. ++.+.+.+ ..+++. +
T Consensus 216 ~~~~~~~~--~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i 293 (434)
T PRK14330 216 ASKIEGIE--RIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASI 293 (434)
T ss_pred HHhcCCce--EEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 53323441 2333321 22233 33333222 011111 1
Q ss_pred c----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 R----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 S----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ +-...++++++++..+|++.++ ..++++.+|.|.++++
T Consensus 294 ~~d~IvGfPgET~edf~~tl~fi~~~~-~~~~~~~~~sp~pGT~ 336 (434)
T PRK14330 294 SSDIIVGFPTETEEDFMETVDLVEKAQ-FERLNLAIYSPREGTV 336 (434)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhcC-CCEEeeeeccCCCCCh
Confidence 1 1113477899999999999986 4789999999998764
No 87
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.63 E-value=1.4e-06 Score=84.50 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=96.3
Q ss_pred ecCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhcc-CCCC
Q 043340 118 SQVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV-QIGQ 193 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~-gi~~ 193 (327)
.+.+|+.+|.||...... ....++++||++.+....+ .+++.|.|+|..+|....+.+.++++.+++.. ++
T Consensus 47 ~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~---~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i-- 121 (340)
T TIGR03699 47 YTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA---YGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHI-- 121 (340)
T ss_pred cchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH---cCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc--
Confidence 357999999999753321 1235899999998887654 36899999983388888788888999887532 23
Q ss_pred ccE----------EEEcCCcH--HHHHHHHhcCCCc-c------e-----------eec---------------------
Q 043340 194 RMI----------TISTVGVP--NTIKKLASYKLQS-T------L-----------AIR--------------------- 222 (327)
Q Consensus 194 r~i----------tisTnG~~--~~i~~L~~~~~~v-~------l-----------avS--------------------- 222 (327)
++ ...|||+. +.+++|.+.|++. . + ..|
T Consensus 122 -~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~ 200 (340)
T TIGR03699 122 -HIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTAT 200 (340)
T ss_pred -CCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccce
Confidence 22 12266764 3467777665321 0 0 001
Q ss_pred -ccCCCCcHHHHHHHHHHHHhcCCc--ceEEEEecc--CCCCCC---CCCCcHHHHHHHHHHHH
Q 043340 223 -SAGVNDQVEHAVELAELLHEWGRG--HHVNLIPFN--PIEGSD---YQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 -I~GvND~~e~a~~L~~~l~~l~~~--~~vnLIp~n--p~~~~~---~~~p~~e~i~~f~~~L~ 278 (327)
|=|...+.++..+++.+++.++.. .-..+||+| | .+.+ .++++.++..+...+.+
T Consensus 201 ~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p-~~tpl~~~~~~~~~e~l~~iA~~R 263 (340)
T TIGR03699 201 MMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQP-GNTELGKKRPATSTEYLKVLAISR 263 (340)
T ss_pred eEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccC-CCCcccCCCCCCHHHHHHHHHHHH
Confidence 557778888999999999887521 112346643 4 2333 23456666655555544
No 88
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=98.63 E-value=2.1e-06 Score=86.10 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=92.5
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC--------hhhHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN--------LKSVLEA 181 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln--------~~~v~~~ 181 (327)
+...+|..+.|||.+|.||..+.. |..+..++++|++++..+.+ .+++.|+|+| ...... ...+.++
T Consensus 144 ~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~---~g~~ei~l~~-~~~~~y~g~d~~~~~~~l~~L 219 (438)
T TIGR01574 144 IYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAE---KGVREITLLG-QNVNAYRGKDFEGKTMDFSDL 219 (438)
T ss_pred ceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHH---cCCeEEEEEe-cccCCccCCCCCCCcccHHHH
Confidence 566788889999999999998643 44578899999999988664 4688999988 332222 1246666
Q ss_pred HHHhhhccCCCCccEEEEcC---CcHH-HHHHHHhcC--C-Ccce-----------------------------------
Q 043340 182 HRCLNKDVQIGQRMITISTV---GVPN-TIKKLASYK--L-QSTL----------------------------------- 219 (327)
Q Consensus 182 i~~l~~~~gi~~r~itisTn---G~~~-~i~~L~~~~--~-~v~l----------------------------------- 219 (327)
++.+.+..|+ .++.+++. .+.+ .++.|.+.+ . .+++
T Consensus 220 l~~l~~~~~~--~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~ 297 (438)
T TIGR01574 220 LRELSTIDGI--ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPN 297 (438)
T ss_pred HHHHHhcCCc--eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 7766433344 24555432 1222 244444332 0 1111
Q ss_pred -eec------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 220 -AIR------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 220 -avS------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
.++ +|| ++++++++..+|++.++ ...+++.+|.|.++++
T Consensus 298 i~i~~d~IvG~Pg--Et~ed~~~tl~~i~~~~-~~~~~~~~~sp~pGT~ 343 (438)
T TIGR01574 298 VSISTDIIVGFPG--ETEEDFEETLDLLREVE-FDSAFSFIYSPRPGTP 343 (438)
T ss_pred CeEeeCEEEeCCC--CCHHHHHHHHHHHHhcC-CCeeeeEEecCCCCCc
Confidence 111 444 67899999999999986 4689999999988764
No 89
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=98.61 E-value=1.5e-06 Score=85.30 Aligned_cols=161 Identities=17% Similarity=0.234 Sum_probs=95.4
Q ss_pred ecCCCCCCCCCCCCCCC-CC-CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc--CChhhHHHHHHHhhhccCCCC
Q 043340 118 SQVGCPLRCSFCATGKG-GF-SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM--LNLKSVLEAHRCLNKDVQIGQ 193 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~-~~-~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl--ln~~~v~~~i~~l~~~~gi~~ 193 (327)
.+.+|+.+|.||.-... .. ...++.+||++.+....+ .+++.|.+.| ||+. ...+.+.++++.+++.+.
T Consensus 79 ~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~---~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~p--- 151 (366)
T TIGR02351 79 LSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKK---SGFKEILLVT-GESEKAAGVEYIAEAIKLAREYFS--- 151 (366)
T ss_pred ECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHh---CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCC---
Confidence 46899999999987532 12 245899999998887654 3689999998 8744 446778888888864321
Q ss_pred ccEEEEcCCc-HHHHHHHHhcCCCccee----------------------------------------ec---ccCCCCc
Q 043340 194 RMITISTVGV-PNTIKKLASYKLQSTLA----------------------------------------IR---SAGVNDQ 229 (327)
Q Consensus 194 r~itisTnG~-~~~i~~L~~~~~~v~la----------------------------------------vS---I~GvND~ 229 (327)
.++++.+-+ ...+++|.+.|++ .+. |+ |-|++++
T Consensus 152 -~i~Iei~~lt~e~~~~Lk~aGv~-r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~ 229 (366)
T TIGR02351 152 -SLAIEVQPLNEEEYKKLVEAGLD-GVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDW 229 (366)
T ss_pred -ccccccccCCHHHHHHHHHcCCC-EEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchh
Confidence 122222212 2234555544422 111 11 6688888
Q ss_pred HHHHHHHHHHHHhcCCc-----ceEEEEeccCCCCCCCC---CCcHHHHHH----HHHHHHhCCCeEEEcC
Q 043340 230 VEHAVELAELLHEWGRG-----HHVNLIPFNPIEGSDYQ---RPYKKAVLA----FAGALESHKITTSIRQ 288 (327)
Q Consensus 230 ~e~a~~L~~~l~~l~~~-----~~vnLIp~np~~~~~~~---~p~~e~i~~----f~~~L~~~gi~v~vR~ 288 (327)
.+++-.++..++.++.. ..|.+.-++|..+ ++. +.++.++.+ |+-++-..+|.+.-|.
T Consensus 230 ~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~ 299 (366)
T TIGR02351 230 RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRE 299 (366)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCC
Confidence 88888888887765421 2344444667766 443 233444433 3334445566654443
No 90
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.60 E-value=3.2e-06 Score=84.48 Aligned_cols=144 Identities=10% Similarity=0.208 Sum_probs=91.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCC------cCC---hhhHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP------MLN---LKSVLE 180 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEP------lln---~~~v~~ 180 (327)
+....|.++.|||.+|.||..+.. |..+..++++|++++....+ .+++.|+|+| ..- +.+ ...+.+
T Consensus 126 ~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~---~G~keI~l~~-~~~~~yg~d~~~~~~~~~l~~ 201 (420)
T PRK14339 126 PYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVN---NGAKEIFLLG-QNVNNYGKRFSSEHEKVDFSD 201 (420)
T ss_pred CeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHH---CCCcEEEEee-eccccccCCCcCCcccccHHH
Confidence 456788889999999999998753 44456799999999987654 4789999998 222 110 013566
Q ss_pred HHHHhhhccCCCCccEEEEc-C--CcHHH-HHHHHhcC---CCcceee--------------------------------
Q 043340 181 AHRCLNKDVQIGQRMITIST-V--GVPNT-IKKLASYK---LQSTLAI-------------------------------- 221 (327)
Q Consensus 181 ~i~~l~~~~gi~~r~itisT-n--G~~~~-i~~L~~~~---~~v~lav-------------------------------- 221 (327)
+++.+.+..|+ .++.+++ + .+.+. ++.+.+.+ ..+++.+
T Consensus 202 Ll~~l~~~~g~--~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p 279 (420)
T PRK14339 202 LLDKLSEIEGL--ERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVP 279 (420)
T ss_pred HHHHHhcCCCc--cEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCC
Confidence 66666432244 2466543 1 12233 44444331 0111111
Q ss_pred ----c---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 ----R---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 ----S---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ |-| ..++++++++..+|++.++ ..++++.+|.|.++.+
T Consensus 280 ~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~-~~~~~~f~~sp~pGT~ 326 (420)
T PRK14339 280 EVSISTDIIVGFPGESDKDFEDTMDVLEKVR-FEQIFSFKYSPRPLTE 326 (420)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHHHHhcC-CCEEeeEecCCCCCCc
Confidence 1 222 3477899999999999986 3578889999998865
No 91
>PRK15108 biotin synthase; Provisional
Probab=98.60 E-value=4.8e-06 Score=81.20 Aligned_cols=166 Identities=13% Similarity=0.198 Sum_probs=105.7
Q ss_pred cCCCCCCCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-CC-cCChhhHHHHHHHhhhccCC
Q 043340 119 QVGCPLRCSFCATGKG---GF--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-EP-MLNLKSVLEAHRCLNKDVQI 191 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~---~~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-EP-lln~~~v~~~i~~l~~~~gi 191 (327)
+.+|+.+|.||..... +. .+.++++||++.+....+ .+++.|++.+.| +| ...++.+.++++.++ ..++
T Consensus 50 Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~---~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik-~~~i 125 (345)
T PRK15108 50 TGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA---AGSTRFCMGAAWKNPHERDMPYLEQMVQGVK-AMGL 125 (345)
T ss_pred CCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH---cCCCEEEEEecCCCCCcchHHHHHHHHHHHH-hCCC
Confidence 5899999999998632 22 245999999998877654 367888775423 66 456788999999997 4566
Q ss_pred CCccEEEEcCCcH--HHHHHHHhcCCC-cceee--c----------------------------------ccCCCCcHHH
Q 043340 192 GQRMITISTVGVP--NTIKKLASYKLQ-STLAI--R----------------------------------SAGVNDQVEH 232 (327)
Q Consensus 192 ~~r~itisTnG~~--~~i~~L~~~~~~-v~lav--S----------------------------------I~GvND~~e~ 232 (327)
.++ .|+|.. +.+++|.+.|++ +++.+ + |=|..++.+|
T Consensus 126 ---~v~-~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed 201 (345)
T PRK15108 126 ---ETC-MTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKD 201 (345)
T ss_pred ---EEE-EeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHH
Confidence 565 468874 468888888754 11111 0 5677888999
Q ss_pred HHHHHHHHHhcCC-cceEEEEeccCCCCCCCC---CCcHHHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 233 AVELAELLHEWGR-GHHVNLIPFNPIEGSDYQ---RPYKKAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 233 a~~L~~~l~~l~~-~~~vnLIp~np~~~~~~~---~p~~e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
.-+++..++.++. ...|.+-+++|.++.++. +.+..+..+...+.+=.--+..+|-+-|.
T Consensus 202 ~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~ 265 (345)
T PRK15108 202 RAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGR 265 (345)
T ss_pred HHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccH
Confidence 9999888888731 123444456677776553 23555555444444332222334444443
No 92
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=98.58 E-value=3e-06 Score=81.17 Aligned_cols=123 Identities=24% Similarity=0.343 Sum_probs=85.5
Q ss_pred EEEecCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-CCcCChhhHHHHHHHhhhcc-
Q 043340 115 CVSSQVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-EPMLNLKSVLEAHRCLNKDV- 189 (327)
Q Consensus 115 cVssq~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-EPlln~~~v~~~i~~l~~~~- 189 (327)
.+.++.||+.+|.||.-.... ..+.++++||++.+....+ .+++.|.|.| | .|..+.+.+.++++.+++..
T Consensus 8 ~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~---~G~~~i~l~g-g~~~~~~~~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 8 NINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA---KGATEVCIQG-GLNPQLDIEYYEELFRAIKQEFP 83 (309)
T ss_pred eecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH---CCCCEEEEec-CCCCCCCHHHHHHHHHHHHHHCC
Confidence 466679999999999875422 1246899999999887654 4789999998 7 57778888999999997542
Q ss_pred CCCCccEE-EE---------cCCcH--HHHHHHHhcCCCcc--ee---e-------------c-----------------
Q 043340 190 QIGQRMIT-IS---------TVGVP--NTIKKLASYKLQST--LA---I-------------R----------------- 222 (327)
Q Consensus 190 gi~~r~it-is---------TnG~~--~~i~~L~~~~~~v~--la---v-------------S----------------- 222 (327)
++ ++. ++ +.|+. +.+++|.+.|++.. .. + +
T Consensus 84 ~i---~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~ 160 (309)
T TIGR00423 84 DV---HIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIP 160 (309)
T ss_pred Cc---eEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 23 333 21 45653 34778877664311 11 0 0
Q ss_pred -----ccCCCCcHHHHHHHHHHHHhcC
Q 043340 223 -----SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 223 -----I~GvND~~e~a~~L~~~l~~l~ 244 (327)
|=|..++.++..++..++++++
T Consensus 161 ~~s~~iiG~~Et~ed~~~~l~~lr~l~ 187 (309)
T TIGR00423 161 TTATMMFGHVENPEHRVEHLLRIRKIQ 187 (309)
T ss_pred ceeeEEecCCCCHHHHHHHHHHHHhhc
Confidence 5566678888888888888875
No 93
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=98.58 E-value=2.4e-06 Score=85.33 Aligned_cols=143 Identities=17% Similarity=0.284 Sum_probs=88.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----CCCCcCChhhHHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----MGEPMLNLKSVLEAHRC 184 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~GEPlln~~~v~~~i~~ 184 (327)
+....+.++.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|+| +|.+.- ..+.++++.
T Consensus 132 ~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~---~G~~ei~l~g~d~~~yg~d~~--~~l~~Ll~~ 206 (420)
T TIGR01578 132 PLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVA---EGCKEIWITSQDTGAYGRDIG--SRLPELLRL 206 (420)
T ss_pred CcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHH---CCCeEEEEEeeccccccCCCC--cCHHHHHHH
Confidence 356778889999999999998753 44678899999999988765 4789999998 232211 235555555
Q ss_pred hhhccCCCCccEEEEcC------CcHHHHHHHHh-cCC--Cc------------------------------------ce
Q 043340 185 LNKDVQIGQRMITISTV------GVPNTIKKLAS-YKL--QS------------------------------------TL 219 (327)
Q Consensus 185 l~~~~gi~~r~itisTn------G~~~~i~~L~~-~~~--~v------------------------------------~l 219 (327)
+.+..+. .++.+++. .+.+.+.++.. .+. .+ .+
T Consensus 207 l~~i~~~--~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i 284 (420)
T TIGR01578 207 ITEIPGE--FRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDL 284 (420)
T ss_pred HHhCCCC--cEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 5321111 13333321 11122222111 000 00 11
Q ss_pred eec---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 220 AIR---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 220 avS---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
.++ |=| .+++++++++..+|++.++ ...+++.+|.|.++++
T Consensus 285 ~i~~~~IvG~PgET~ed~~~t~~~~~~~~-~~~i~~~~~~p~pGT~ 329 (420)
T TIGR01578 285 TLSTDIIVGFPTETDDDFEETMELLRKYR-PEKINITKFSPRPGTP 329 (420)
T ss_pred EEEeeEEEeCCCCCHHHHHHHHHHHHHhC-CCEEEEEEeeCCCCCc
Confidence 111 223 3578899999999999986 4689999999998764
No 94
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.56 E-value=3.1e-06 Score=84.98 Aligned_cols=144 Identities=17% Similarity=0.252 Sum_probs=91.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC------hhhHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN------LKSVLEAHR 183 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln------~~~v~~~i~ 183 (327)
+...+|..+.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|+| ..-... ...+.++++
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~---~G~~ei~l~~-~~~~~yg~d~~~~~~l~~Ll~ 221 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVS---EGYKEVTLLG-QNVNSYGKDLEEKIDFADLLR 221 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH---CCCcEEEEec-cccCcCCcCCCCCcCHHHHHH
Confidence 456678889999999999998753 44588899999999987664 4788999988 443221 023556666
Q ss_pred HhhhccCCCCccEEEEcC---CcHHH-HHHHHhcC--C-Cccee------------------------------------
Q 043340 184 CLNKDVQIGQRMITISTV---GVPNT-IKKLASYK--L-QSTLA------------------------------------ 220 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTn---G~~~~-i~~L~~~~--~-~v~la------------------------------------ 220 (327)
.+.+..++ .++.+++. .+.+. ++.+.+.+ . .+++.
T Consensus 222 ~l~~~~~~--~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~ 299 (439)
T PRK14328 222 RVNEIDGL--ERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVA 299 (439)
T ss_pred HHHhcCCC--cEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 66432233 24555442 12222 34443331 0 01111
Q ss_pred ec---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 221 IR---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 221 vS---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
++ |=| .+++++++++..++++.++ ...+++.+|.|.++.+
T Consensus 300 i~~d~IvG~PgET~ed~~~tl~~i~~l~-~~~~~~~~~sp~pGT~ 343 (439)
T PRK14328 300 ITTDIIVGFPGETEEDFEETLDLVKEVR-YDSAFTFIYSKRKGTP 343 (439)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcC-CCcccceEecCCCCCh
Confidence 11 222 2467899999999999986 4678999999998754
No 95
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.56 E-value=2.4e-06 Score=82.47 Aligned_cols=157 Identities=16% Similarity=0.204 Sum_probs=94.5
Q ss_pred EEEEecCCCCCCCCCCCCCCC-CC--CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCCh--------------
Q 043340 114 ACVSSQVGCPLRCSFCATGKG-GF--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLNL-------------- 175 (327)
Q Consensus 114 lcVssq~GCnl~C~fC~t~~~-~~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln~-------------- 175 (327)
..|..|.+|+.+|.||.-... +. ...++++||++++....+ .+++.|+++| |+ |-..+
T Consensus 6 ~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~---~G~~ei~l~~-G~~p~~~~~~~~~~l~~~~~~~ 81 (322)
T TIGR03550 6 VFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAA---AGCTEALFTF-GEKPEERYPEAREWLAEMGYDS 81 (322)
T ss_pred EEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHH---CCCCEEEEec-CCCccccHHHHHHHHHhcCCcc
Confidence 456678999999999997543 22 236999999999988765 4678899998 77 33321
Q ss_pred --hhHHHHHHHhhhccCCCCccEEEEcCCcHH-HHHHHHhcCCCcce---------------------------------
Q 043340 176 --KSVLEAHRCLNKDVQIGQRMITISTVGVPN-TIKKLASYKLQSTL--------------------------------- 219 (327)
Q Consensus 176 --~~v~~~i~~l~~~~gi~~r~itisTnG~~~-~i~~L~~~~~~v~l--------------------------------- 219 (327)
+.+.++++.+++..++ ..+++...+.+ .++.|.+.+.+.++
T Consensus 82 ~~~~~~~~~~~i~~e~~~---~~~~~~g~lt~e~l~~Lk~aG~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a 158 (322)
T TIGR03550 82 TLEYLRELCELALEETGL---LPHTNPGVMSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDA 158 (322)
T ss_pred HHHHHHHHHHHHHHhcCC---ccccCCCCCCHHHHHHHHhhCCCCCcchhhhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 4555555655433333 33333333322 34444443211000
Q ss_pred -----eec---ccCCCCcHHHHHHHHHHHHhcCC----cceEEEEeccCCCCCCC---CCCcHHHHHHHHHHH
Q 043340 220 -----AIR---SAGVNDQVEHAVELAELLHEWGR----GHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGAL 277 (327)
Q Consensus 220 -----avS---I~GvND~~e~a~~L~~~l~~l~~----~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L 277 (327)
.+. |=|..++++|..+.+.+++.++. ...+-+.||+|.++.++ ++++..+..+...+.
T Consensus 159 ~~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~ 231 (322)
T TIGR03550 159 GRLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVA 231 (322)
T ss_pred HHcCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHH
Confidence 000 55778889999999998887652 12445567888866543 345555555443333
No 96
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.55 E-value=5e-06 Score=83.68 Aligned_cols=145 Identities=14% Similarity=0.215 Sum_probs=91.8
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-----CCCcC-ChhhHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-----GEPML-NLKSVLEAHR 183 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-----GEPll-n~~~v~~~i~ 183 (327)
+...+|..|.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|+|. |-... +...+.++++
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~---~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~ 223 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVD---RGAREITLLGQNVNSYGQDKHGDGTSFAQLLH 223 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHH---CCCeEEEEEecCccccccCCCCCCccHHHHHH
Confidence 466788889999999999998653 45588999999999988765 46889999881 21110 1123555666
Q ss_pred HhhhccCCCCccEEEEcC---CcHHH-HHHHHhcC---CCcc------------------------------------ee
Q 043340 184 CLNKDVQIGQRMITISTV---GVPNT-IKKLASYK---LQST------------------------------------LA 220 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTn---G~~~~-i~~L~~~~---~~v~------------------------------------la 220 (327)
.+.+..|+ .+|.+++. .+.+. ++.+.+.+ ..++ +.
T Consensus 224 ~l~~~~g~--~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~ 301 (446)
T PRK14337 224 KVAALPGL--ERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIA 301 (446)
T ss_pred HHHhcCCC--cEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCe
Confidence 55432243 24555431 22232 33333311 0011 11
Q ss_pred ec---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 221 IR---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 221 vS---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
++ |-| ..++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 302 i~~d~IvG~PgET~ed~~~tl~~l~~~~-~~~~~~f~ysp~pgT~ 345 (446)
T PRK14337 302 LTTDLIVGFPGETEEDFEQTLEAMRTVG-FASSFSFCYSDRPGTR 345 (446)
T ss_pred EEEeEEEECCCCCHHHHHHHHHHHHhcC-CCeeEEEecCCCCCCc
Confidence 11 222 2467899999999999986 4788999999988753
No 97
>PRK06267 hypothetical protein; Provisional
Probab=98.54 E-value=4.2e-06 Score=81.68 Aligned_cols=150 Identities=12% Similarity=0.159 Sum_probs=96.5
Q ss_pred cCCCC--CCCCCCCCCCCC------CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccC
Q 043340 119 QVGCP--LRCSFCATGKGG------FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ 190 (327)
Q Consensus 119 q~GCn--l~C~fC~t~~~~------~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~g 190 (327)
..+|+ .+|.||...... ..+.++++||++++....+ .+++.+.++| |+++ ..+.+.++++.+++..+
T Consensus 34 S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~---~Gv~~~~lsg-G~~~-~~~el~~i~e~I~~~~~ 108 (350)
T PRK06267 34 GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKR---IGWKLEFISG-GYGY-TTEEINDIAEMIAYIQG 108 (350)
T ss_pred cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHH---cCCCEEEEec-CCCC-CHHHHHHHHHHHHHhhC
Confidence 58999 779999865421 1246799999999977654 3577788899 9995 44678888877753222
Q ss_pred CCCccEEEEcCCcHH-HH------------------------------------HHHHhcCCCcceeec-ccCCCCcHHH
Q 043340 191 IGQRMITISTVGVPN-TI------------------------------------KKLASYKLQSTLAIR-SAGVNDQVEH 232 (327)
Q Consensus 191 i~~r~itisTnG~~~-~i------------------------------------~~L~~~~~~v~lavS-I~GvND~~e~ 232 (327)
. .+.++...... .. +.+.+.|+ .+... |=|..++.+|
T Consensus 109 ~---~~~~s~G~~d~~~~~~~~l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi--~v~~g~IiGlgEt~ed 183 (350)
T PRK06267 109 C---KQYLNVGIIDFLNINLNEIEGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGL--KTGITIILGLGETEDD 183 (350)
T ss_pred C---ceEeecccCCHHHHhhccccCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCC--eeeeeEEEeCCCCHHH
Confidence 2 34444332211 11 11111111 11111 4567788999
Q ss_pred HHHHHHHHHhcCCcceEEEEeccCCCCCC---CCCCcHHHHHHHHHHHHh
Q 043340 233 AVELAELLHEWGRGHHVNLIPFNPIEGSD---YQRPYKKAVLAFAGALES 279 (327)
Q Consensus 233 a~~L~~~l~~l~~~~~vnLIp~np~~~~~---~~~p~~e~i~~f~~~L~~ 279 (327)
+.+++++++.++. ..+.+.+|.|.++.+ .++++.+++.++...++-
T Consensus 184 ~~~~l~~l~~l~~-d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 184 IEKLLNLIEELDL-DRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred HHHHHHHHHHcCC-CEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999863 567888899988764 456777777766666543
No 98
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=98.53 E-value=4.9e-06 Score=84.83 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=56.6
Q ss_pred EEEecCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhh
Q 043340 115 CVSSQVGCPLRCSFCATGKGG-FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 115 cVssq~GCnl~C~fC~t~~~~-~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~ 187 (327)
.+.+..|||++|.||..+... ..|..+++.+++++....+. .++..+.|.+ .+|+.|.+.+.++++.+.+
T Consensus 196 ~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~--~gv~~~~~~D-d~f~~~~~~~~~l~~~l~~ 266 (497)
T TIGR02026 196 VPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRT--HGVGFFILAD-EEPTINRKKFQEFCEEIIA 266 (497)
T ss_pred eeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHH--cCCCEEEEEe-cccccCHHHHHHHHHHHHh
Confidence 355679999999999987542 34678899999999887553 3688899999 9999998888899988864
No 99
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.53 E-value=5.2e-06 Score=83.95 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=66.8
Q ss_pred EEEEEecCCCCCCCCCCCCCCC--C-CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhcc
Q 043340 113 TACVSSQVGCPLRCSFCATGKG--G-FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV 189 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~--~-~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~ 189 (327)
.+.+.+..|||++|.||..+.. + ..|..+++.|++++....+.+ .+++.|.|.+ +.++.+.+.+.++++.+++ .
T Consensus 197 ~~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~-~~~~~i~f~D-d~f~~~~~~~~~l~~~l~~-~ 273 (472)
T TIGR03471 197 YISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENF-PEVREFFFDD-DTFTDDKPRAEEIARKLGP-L 273 (472)
T ss_pred eEEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhc-CCCcEEEEeC-CCCCCCHHHHHHHHHHHhh-c
Confidence 3456677999999999986532 2 236788999999998776532 2578888877 7788888888888888853 4
Q ss_pred CCCCccEEEEcCC-cHH-HHHHHHhcCC
Q 043340 190 QIGQRMITISTVG-VPN-TIKKLASYKL 215 (327)
Q Consensus 190 gi~~r~itisTnG-~~~-~i~~L~~~~~ 215 (327)
++ .....+.. +.+ .++.|.+.|.
T Consensus 274 ~i---~~~~~~~~~~~~e~l~~l~~aG~ 298 (472)
T TIGR03471 274 GV---TWSCNARANVDYETLKVMKENGL 298 (472)
T ss_pred Cc---eEEEEecCCCCHHHHHHHHHcCC
Confidence 55 34333322 333 4667776653
No 100
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=98.53 E-value=8.5e-06 Score=82.14 Aligned_cols=165 Identities=13% Similarity=0.182 Sum_probs=100.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC-CCCCC---CHHHHHHHHHHHHHHhc--CCcceEEEeeCCCCcC-ChhhHHHHHHHh
Q 043340 113 TACVSSQVGCPLRCSFCATGKGG-FSRNL---SSHEIVGQVLAIEEIFK--HRVTNVVFMGMGEPML-NLKSVLEAHRCL 185 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~-~~r~l---t~~EIv~qv~~~~~~~~--~~v~~Ivf~G~GEPll-n~~~v~~~i~~l 185 (327)
+++|=. .=|+.+|.||...... ..... .++.+++++......++ .++..|.|.| |+|++ +.+.+.++++.+
T Consensus 51 ~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgG-GtP~~l~~~~l~~ll~~i 128 (455)
T TIGR00538 51 SLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGG-GTPTYLSPEQISRLMKLI 128 (455)
T ss_pred EEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECC-CCcCCCCHHHHHHHHHHH
Confidence 444433 4599999999876432 11112 24566666665543332 3688899999 99985 889999999999
Q ss_pred hhccCCCC-ccEEEEcCCc---HHHHHHHHhcCCCcceeec---------------------------------------
Q 043340 186 NKDVQIGQ-RMITISTVGV---PNTIKKLASYKLQSTLAIR--------------------------------------- 222 (327)
Q Consensus 186 ~~~~gi~~-r~itisTnG~---~~~i~~L~~~~~~v~lavS--------------------------------------- 222 (327)
++.+.+.. ..++++||+. .+.++.|.+.|.. .+.|.
T Consensus 129 ~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~-risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~d 207 (455)
T TIGR00538 129 RENFPFNADAEISIEIDPRYITKDVIDALRDEGFN-RLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINID 207 (455)
T ss_pred HHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCC-EEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEe
Confidence 76443321 2689999874 2346666665421 12111
Q ss_pred ----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC--------CCCCCCcHHHHH----HHHHHHHhCCCe
Q 043340 223 ----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG--------SDYQRPYKKAVL----AFAGALESHKIT 283 (327)
Q Consensus 223 ----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~--------~~~~~p~~e~i~----~f~~~L~~~gi~ 283 (327)
+|| ++.+++.+..+++..++ ..++.+.++...+. .....|++++.. ...+.|.+.|..
T Consensus 208 li~GlPg--qt~e~~~~tl~~~~~l~-~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 208 LIYGLPK--QTKESFAKTLEKVAELN-PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred EEeeCCC--CCHHHHHHHHHHHHhcC-CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 455 56788999999988876 35677666643221 122345554443 334556666754
No 101
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=98.52 E-value=4.6e-08 Score=90.42 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=91.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhh
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG----GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN 186 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~----~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~ 186 (327)
+..+-+|.+..||++|.||.-... ...+.++.+|++.....+.. ..++.+-++| |||+... .+.+.+..+.
T Consensus 10 htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~---qgv~knrLtg-geptIr~-di~~i~~g~~ 84 (323)
T KOG2876|consen 10 HTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAP---QGVDKNRLTG-GEPLIRQ-DIVPIVAGLS 84 (323)
T ss_pred hhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhH---hhhhhhhhcC-CCCcccc-cccchhhhhh
Confidence 455667888999999999997533 23456888888875544432 4688889999 9999984 4555555554
Q ss_pred hccCCCCccEEEEcCCcHH--HHHHHHhcCCC----------------------------------------cceeec-c
Q 043340 187 KDVQIGQRMITISTVGVPN--TIKKLASYKLQ----------------------------------------STLAIR-S 223 (327)
Q Consensus 187 ~~~gi~~r~itisTnG~~~--~i~~L~~~~~~----------------------------------------v~lavS-I 223 (327)
+--|+ +.+.|+|||++. .+-+|-+.++. +.+++- .
T Consensus 85 ~l~gL--ks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~ 162 (323)
T KOG2876|consen 85 SLPGL--KSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVM 162 (323)
T ss_pred cccch--hhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEE
Confidence 43466 578999999842 23333333221 111111 6
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCc
Q 043340 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY 266 (327)
Q Consensus 224 ~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~ 266 (327)
+|+|+++ +-.++.+-+.. +..|..|.|.|..+..|...+
T Consensus 163 k~~n~~e--v~Dfv~~tr~~--p~DVrfIe~mpf~gn~~~t~~ 201 (323)
T KOG2876|consen 163 KGLNEDE--VFDFVLLTRMR--PLDVRFIEFMPFDGNKWNTKS 201 (323)
T ss_pred eccCCCc--ccceeeecCCC--CcceEEEEecccCCCcccccc
Confidence 7777752 33344333332 367888999998877665433
No 102
>PRK05660 HemN family oxidoreductase; Provisional
Probab=98.52 E-value=8.5e-06 Score=80.32 Aligned_cols=165 Identities=12% Similarity=0.176 Sum_probs=100.4
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHh-cCCcceEEEeeCCCCcC-ChhhHHHHHHHhh
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGFSRNLSSHE----IVGQVLAIEEIF-KHRVTNVVFMGMGEPML-NLKSVLEAHRCLN 186 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~E----Iv~qv~~~~~~~-~~~v~~Ivf~G~GEPll-n~~~v~~~i~~l~ 186 (327)
+++|-. +=|+.+|.||...........+.++ +++++....... +.++..|.|.| |+|++ ..+.+.++++.++
T Consensus 8 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GG-GtPs~l~~~~l~~ll~~l~ 85 (378)
T PRK05660 8 SLYIHI-PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGG-GTPSLFSAEAIQRLLDGVR 85 (378)
T ss_pred EEEEEe-CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCC-CccccCCHHHHHHHHHHHH
Confidence 444443 4599999999875432223344444 444444322111 24688888888 99998 4578889999887
Q ss_pred hccCCC-CccEEEEcCCc---HHHHHHHHhcCCCcceeec----------------------------------------
Q 043340 187 KDVQIG-QRMITISTVGV---PNTIKKLASYKLQSTLAIR---------------------------------------- 222 (327)
Q Consensus 187 ~~~gi~-~r~itisTnG~---~~~i~~L~~~~~~v~lavS---------------------------------------- 222 (327)
+.+++. ...|+++||+- .+.++.|.+.|.. .+.++
T Consensus 86 ~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~-risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dl 164 (378)
T PRK05660 86 ARLPFAPDAEITMEANPGTVEADRFVGYQRAGVN-RISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDL 164 (378)
T ss_pred HhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCC-EEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 655542 23799999963 2456666665532 22222
Q ss_pred ---ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCC-----CCcHHHHH----HHHHHHHhCCCe
Q 043340 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ-----RPYKKAVL----AFAGALESHKIT 283 (327)
Q Consensus 223 ---I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~-----~p~~e~i~----~f~~~L~~~gi~ 283 (327)
+|| .+.+++.+..+++..++ ..++.+-++.+.+++.+. .|++++.. ...+.|.+.|..
T Consensus 165 i~Glpg--qt~~~~~~~l~~~~~l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (378)
T PRK05660 165 MHGLPD--QSLEEALDDLRQAIALN-PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ 234 (378)
T ss_pred ecCCCC--CCHHHHHHHHHHHHhcC-CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc
Confidence 455 45677777778777776 367777777766664332 25544333 344567777764
No 103
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.52 E-value=6.1e-06 Score=83.10 Aligned_cols=144 Identities=18% Similarity=0.295 Sum_probs=91.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEee-----C------CCCcC-ChhhH
Q 043340 112 LTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-----M------GEPML-NLKSV 178 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-----~------GEPll-n~~~v 178 (327)
...++..+.|||.+|.||..+.. |..+..++++|++++....+ .+++.|+|+| + +.|.. +...+
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~---~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l 224 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAA---QGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTL 224 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHH---CCCcEEEEEecccchhcCCCCCccccccccccH
Confidence 45678889999999999998743 44577889999999987654 4688888876 1 22322 12356
Q ss_pred HHHHHHhhhccCCCCccEEEEcCC---cHHH-HHHHHhcC---CCcc---------------------------------
Q 043340 179 LEAHRCLNKDVQIGQRMITISTVG---VPNT-IKKLASYK---LQST--------------------------------- 218 (327)
Q Consensus 179 ~~~i~~l~~~~gi~~r~itisTnG---~~~~-i~~L~~~~---~~v~--------------------------------- 218 (327)
.++++.+.+..|+ .+|.+++.- +.+. ++.+.+.+ ..++
T Consensus 225 ~~Ll~~i~~~~~~--~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~ 302 (448)
T PRK14333 225 TDLLYYIHDVEGI--ERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREY 302 (448)
T ss_pred HHHHHHHHhcCCC--eEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 6666666543344 246664321 2222 33333221 0011
Q ss_pred ---eeec---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 219 ---LAIR---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 219 ---lavS---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+.++ |-| ..++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 303 ~p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~-~~~~~~~~~sp~pGT~ 351 (448)
T PRK14333 303 MPDASISADAIVGFPGETEAQFENTLKLVEEIG-FDQLNTAAYSPRPGTP 351 (448)
T ss_pred CCCcEEEeeEEEECCCCCHHHHHHHHHHHHHcC-CCEEeeeeeecCCCCc
Confidence 1111 212 3478899999999999986 4689999999998865
No 104
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=98.51 E-value=8.6e-06 Score=79.64 Aligned_cols=159 Identities=12% Similarity=0.162 Sum_probs=95.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHhc-CCcceEEEeeCCCCc-CChhhHHHHHHHhhhccCCC-
Q 043340 120 VGCPLRCSFCATGKGGFSRNLSSH----EIVGQVLAIEEIFK-HRVTNVVFMGMGEPM-LNLKSVLEAHRCLNKDVQIG- 192 (327)
Q Consensus 120 ~GCnl~C~fC~t~~~~~~r~lt~~----EIv~qv~~~~~~~~-~~v~~Ivf~G~GEPl-ln~~~v~~~i~~l~~~~gi~- 192 (327)
+=|+.+|.||......... -..+ .+..++....+.++ ..+..|.|.| |+|+ +..+.+.++++.+++.++++
T Consensus 8 PFC~~~C~yC~f~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GG-GtPs~l~~~~l~~ll~~i~~~~~~~~ 85 (360)
T TIGR00539 8 PFCENKCGYCDFNSYENKS-GPKEEYTQALCQDLKHALSQTDQEPLESIFIGG-GTPNTLSVEAFERLFESIYQHASLSD 85 (360)
T ss_pred CCCcCcCCCCCCcccCcCc-cCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCC-CchhcCCHHHHHHHHHHHHHhCCCCC
Confidence 4599999999864331111 1222 33334433222222 3478888888 9997 45688888888876544332
Q ss_pred CccEEEEcCCc---HHHHHHHHhcCCCcceeec-------------------------------------------ccCC
Q 043340 193 QRMITISTVGV---PNTIKKLASYKLQSTLAIR-------------------------------------------SAGV 226 (327)
Q Consensus 193 ~r~itisTnG~---~~~i~~L~~~~~~v~lavS-------------------------------------------I~Gv 226 (327)
...++++||+- .+.++.|.+.|.. .+.++ +||
T Consensus 86 ~~eitie~np~~lt~e~l~~l~~~Gv~-risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg- 163 (360)
T TIGR00539 86 DCEITTEANPELITAEWCKGLKGAGIN-RLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPL- 163 (360)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHcCCC-EEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC-
Confidence 12689999974 2346666655421 12111 444
Q ss_pred CCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCC-----CCcHHHHH----HHHHHHHhCCCeE
Q 043340 227 NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ-----RPYKKAVL----AFAGALESHKITT 284 (327)
Q Consensus 227 ND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~-----~p~~e~i~----~f~~~L~~~gi~v 284 (327)
.+.+++.+..+++..++ ..++.+.++.|.++..+. .|++++.. ...+.|.+.|..-
T Consensus 164 -qt~~~~~~~l~~~~~l~-~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 228 (360)
T TIGR00539 164 -QTLNSLKEELKLAKELP-INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQ 228 (360)
T ss_pred -CCHHHHHHHHHHHHccC-CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCce
Confidence 56778888888888876 467888888887775432 35554443 3445577777653
No 105
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.51 E-value=6.8e-06 Score=82.55 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=90.1
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC--------ChhhHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML--------NLKSVLEA 181 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll--------n~~~v~~~ 181 (327)
+...++.++.|||++|.||..+.. |..+..++++|++++..+.+ .+++.|+|+| -.-.. +...+.++
T Consensus 146 ~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~---~g~~ei~l~d-~~~~~y~~~~~~~~~~~l~~L 221 (444)
T PRK14325 146 GPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAE---QGVREITLLG-QNVNAYRGEGPDGEIADFAEL 221 (444)
T ss_pred CceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHH---CCCcEEEEEe-eccccccCCCCCCCcchHHHH
Confidence 356677778999999999998753 34457889999999988764 3688898887 22111 11246666
Q ss_pred HHHhhhccCCCCccEEEEcC---CcHHH-HHHHHhcC--C-Ccce-----------------------------------
Q 043340 182 HRCLNKDVQIGQRMITISTV---GVPNT-IKKLASYK--L-QSTL----------------------------------- 219 (327)
Q Consensus 182 i~~l~~~~gi~~r~itisTn---G~~~~-i~~L~~~~--~-~v~l----------------------------------- 219 (327)
++.+.+..|+ .+|.+++. .+.+. ++.+.+.+ . .+++
T Consensus 222 l~~l~~~~~~--~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~g 299 (444)
T PRK14325 222 LRLVAAIDGI--ERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPD 299 (444)
T ss_pred HHHHHhcCCc--cEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCC
Confidence 6666432233 24555442 22232 33333321 0 0111
Q ss_pred -eec------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 220 -AIR------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 220 -avS------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
.++ +|| ++++++++..+|++.++ ...+++.+|.|.++++
T Consensus 300 i~v~~~~IvG~Pg--ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~pGT~ 345 (444)
T PRK14325 300 IAISSDFIVGFPG--ETDEDFEATMKLIEDVG-FDQSFSFIYSPRPGTP 345 (444)
T ss_pred CEEEeeEEEECCC--CCHHHHHHHHHHHHhcC-CCeeeeeeccCCCCCc
Confidence 111 444 67899999999999986 4678888999988764
No 106
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.50 E-value=7.1e-06 Score=83.08 Aligned_cols=144 Identities=20% Similarity=0.297 Sum_probs=92.1
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-----C---CCc--CChhhHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-----G---EPM--LNLKSVL 179 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-----G---EPl--ln~~~v~ 179 (327)
+....+.++.|||++|.||..+.. |..|..++++|++++....+ .+++.|+|.|. | ++. .+...+.
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~---~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~ 243 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFA---KGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFA 243 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHH---CCCeEEEEEeecccccccccCCccccccccHH
Confidence 456788888999999999998643 44588899999999988765 36788988872 1 110 0112466
Q ss_pred HHHHHhhhcc-CCCCccEEEEcC---CcHHH-HHHHHhc--CC-Ccce--------------------------------
Q 043340 180 EAHRCLNKDV-QIGQRMITISTV---GVPNT-IKKLASY--KL-QSTL-------------------------------- 219 (327)
Q Consensus 180 ~~i~~l~~~~-gi~~r~itisTn---G~~~~-i~~L~~~--~~-~v~l-------------------------------- 219 (327)
++++.+.+.. ++ ++.+++. .+.+. ++.+.+. +. .+++
T Consensus 244 ~Ll~~l~~~~~~~---~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~ 320 (467)
T PRK14329 244 QLLEMVAEAVPDM---RIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRI 320 (467)
T ss_pred HHHHHHHhcCCCc---EEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 6666664322 23 5666652 22233 3444332 11 1111
Q ss_pred ----eec---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 220 ----AIR---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 220 ----avS---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
.++ |=| .+++++++++..+|++.++ ...+++.+|.|.++++
T Consensus 321 ~~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~-~~~~~v~~~sp~pGT~ 369 (467)
T PRK14329 321 IPDCGISTDMIAGFPTETEEDHQDTLSLMEEVG-YDFAFMFKYSERPGTY 369 (467)
T ss_pred CCCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhC-CCeEeeeEecCCCCCh
Confidence 111 222 3478899999999999986 4688999999998764
No 107
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.50 E-value=1e-05 Score=81.67 Aligned_cols=144 Identities=18% Similarity=0.264 Sum_probs=90.5
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC--------hhhHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN--------LKSVLEA 181 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln--------~~~v~~~ 181 (327)
+...++..+.|||++|.||..+.. |..+..++++|++++..+.+ .+++.|+|+| .....+ ...+.++
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~---~G~~ei~l~g-~~~~~y~~~~~~~~~~~~~~L 226 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSE---KGVREITLLG-QNVNSYRGRDREGNIVTFPQL 226 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHH---CCCeEEEEEe-ecccccccccccCCccCHHHH
Confidence 455677788999999999998743 34567889999999987654 4688999988 433321 0135555
Q ss_pred HHHhhh----ccCCCCccEEEEcCC---cHHH-HHHHHhc--CC-Ccceee-----------------------------
Q 043340 182 HRCLNK----DVQIGQRMITISTVG---VPNT-IKKLASY--KL-QSTLAI----------------------------- 221 (327)
Q Consensus 182 i~~l~~----~~gi~~r~itisTnG---~~~~-i~~L~~~--~~-~v~lav----------------------------- 221 (327)
++.+.+ ..++ ..+.+++.- +.+. ++.+.+. +. .+++.+
T Consensus 227 l~~l~~~~~~~~~i--~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~ 304 (455)
T PRK14335 227 LRHIVRRAEVTDQI--RWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKA 304 (455)
T ss_pred HHHHHHhhcccCCc--eEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 555521 1233 245543322 2222 4444432 11 111111
Q ss_pred -------c---ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 222 -------R---SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 222 -------S---I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
+ |=| .+++++++++..+|++.++ ...+++.+|.|.++.+
T Consensus 305 ~~pgi~i~~d~IvGfPgET~edf~~Tl~~i~~l~-~~~~~~~~~sp~pGT~ 354 (455)
T PRK14335 305 SIPNVALSTDILIGFPGETEEDFEQTLDLMREVE-FDSAFMYHYNPREGTP 354 (455)
T ss_pred hCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC-CCeEEEEEecCCCCCc
Confidence 1 222 3478899999999999986 4789999999998864
No 108
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=98.50 E-value=5.7e-06 Score=80.71 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHh-cCCcceEEEeeCCCCc-CChhhHHHHHHHhhhccCCCCc
Q 043340 120 VGCPLRCSFCATGKGGFSRNL---SSHEIVGQVLAIEEIF-KHRVTNVVFMGMGEPM-LNLKSVLEAHRCLNKDVQIGQR 194 (327)
Q Consensus 120 ~GCnl~C~fC~t~~~~~~r~l---t~~EIv~qv~~~~~~~-~~~v~~Ivf~G~GEPl-ln~~~v~~~i~~l~~~~gi~~r 194 (327)
+=|+.+|.||........+.+ .++.+++++....+.+ +.+++.|.|.| |+|+ ++.+.+.++++.+++.+.. ..
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGG-GTPs~l~~~~l~~ll~~i~~~~~~-~~ 85 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGG-GTPSTVSAKFYEPIFEIISPYLSK-DC 85 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHHHHHHHHhcCC-Cc
Confidence 349999999986433211222 2345556655433222 23577888878 9996 6878888888888643221 12
Q ss_pred cEEEEcCCc---HHHHHHHHhcCCCcceeec-------------------------------------------ccCCCC
Q 043340 195 MITISTVGV---PNTIKKLASYKLQSTLAIR-------------------------------------------SAGVND 228 (327)
Q Consensus 195 ~itisTnG~---~~~i~~L~~~~~~v~lavS-------------------------------------------I~GvND 228 (327)
.+++++|.- .+.++.|.+.|.. .+.+. +|| .
T Consensus 86 eitiE~nP~~~~~e~l~~l~~~Gvn-RiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg--q 162 (350)
T PRK08446 86 EITTEANPNSATKAWLKGMKNLGVN-RISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL--D 162 (350)
T ss_pred eEEEEeCCCCCCHHHHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC--C
Confidence 689999874 2456666665432 12211 555 4
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC-----CCCc-HHHHHHHHHHHHhCCCe
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-----QRPY-KKAVLAFAGALESHKIT 283 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~-----~~p~-~e~i~~f~~~L~~~gi~ 283 (327)
+.+++.+..+++..++ ..++.+-++.+.+++++ +.++ .+..+.+.+.|.+.|..
T Consensus 163 t~~~~~~~l~~~~~l~-~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 222 (350)
T PRK08446 163 NKKLLKEELKLAKELP-INHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFK 222 (350)
T ss_pred CHHHHHHHHHHHHhcC-CCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCc
Confidence 5678888888888776 46788777777666543 1233 34456678888888864
No 109
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=82.72 Aligned_cols=136 Identities=22% Similarity=0.346 Sum_probs=92.2
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCC--------C-CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGFS--------R-NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEA 181 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~~--------r-~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~ 181 (327)
...++| +.-||.+|.||......+. | --+.++|+.++... .-.++.++| ||||+-.+.+.+.
T Consensus 29 KlVlFv--TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~------~a~GasiTG-GdPl~~ieR~~~~ 99 (353)
T COG2108 29 KLVLFV--TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLM------DALGASITG-GDPLLEIERTVEY 99 (353)
T ss_pred ceEEEE--ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHh------ccccccccC-CChHHHHHHHHHH
Confidence 455555 5789999999998643221 2 23456777666543 237888999 9999999999999
Q ss_pred HHHhhhccCCCCccEEEEcCCcH---HHHHHHHhcCCC---cce-------------------------eecccCCCCcH
Q 043340 182 HRCLNKDVQIGQRMITISTVGVP---NTIKKLASYKLQ---STL-------------------------AIRSAGVNDQV 230 (327)
Q Consensus 182 i~~l~~~~gi~~r~itisTnG~~---~~i~~L~~~~~~---v~l-------------------------avSI~GvND~~ 230 (327)
++.+++.+|- .-||.+.|+|.. ..++.|.++|++ ++. .+-+|.+-.-+
T Consensus 100 ir~LK~efG~-~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg~e 178 (353)
T COG2108 100 IRLLKDEFGE-DFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEIPAIPGEE 178 (353)
T ss_pred HHHHHHhhcc-ceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeecCCCcchH
Confidence 9999876642 129999999984 358899888753 121 11156555556
Q ss_pred HHHHHHHHHHHhcC-CcceEEEEeccC
Q 043340 231 EHAVELAELLHEWG-RGHHVNLIPFNP 256 (327)
Q Consensus 231 e~a~~L~~~l~~l~-~~~~vnLIp~np 256 (327)
+.+.++++++...+ ....+|=+-|+.
T Consensus 179 ~~i~e~~~~~~~~~~~FlNiNELE~sE 205 (353)
T COG2108 179 EAILEFAKALDENGLDFLNINELEFSE 205 (353)
T ss_pred HHHHHHHHHHHhcccceeeeeeeeecc
Confidence 67788888887754 223444455553
No 110
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=98.47 E-value=1.4e-05 Score=80.57 Aligned_cols=161 Identities=13% Similarity=0.194 Sum_probs=101.9
Q ss_pred EEEEEecCCCCCCCCCCCCCCC-CCCCCC---CHHHHHHHHHHHHHHh--cCCcceEEEeeCCCCcC-ChhhHHHHHHHh
Q 043340 113 TACVSSQVGCPLRCSFCATGKG-GFSRNL---SSHEIVGQVLAIEEIF--KHRVTNVVFMGMGEPML-NLKSVLEAHRCL 185 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~-~~~r~l---t~~EIv~qv~~~~~~~--~~~v~~Ivf~G~GEPll-n~~~v~~~i~~l 185 (327)
+++|-. +=|+.+|.||..... +..+.. .++.+++++....+.+ +.++..|.|.| |+|++ +.+.+.++++.+
T Consensus 51 ~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gG-GtPs~l~~~~l~~ll~~l 128 (453)
T PRK09249 51 SLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGG-GTPTFLSPEQLRRLMALL 128 (453)
T ss_pred EEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECC-cccccCCHHHHHHHHHHH
Confidence 444433 459999999987533 111122 2345666666544433 23588999999 99995 678899999998
Q ss_pred hhccCCC-CccEEEEcCCc--H-HHHHHHHhcCCCcceeecccCCCC----------cHHHHHHHHHHHHhcCC-cceEE
Q 043340 186 NKDVQIG-QRMITISTVGV--P-NTIKKLASYKLQSTLAIRSAGVND----------QVEHAVELAELLHEWGR-GHHVN 250 (327)
Q Consensus 186 ~~~~gi~-~r~itisTnG~--~-~~i~~L~~~~~~v~lavSI~GvND----------~~e~a~~L~~~l~~l~~-~~~vn 250 (327)
++.+++. ...++++||+- . +.++.|.+.|.. .+.+++.+++| +.+++.+.++.++..+. ...+.
T Consensus 129 ~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~-risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~d 207 (453)
T PRK09249 129 REHFNFAPDAEISIEIDPRELDLEMLDALRELGFN-RLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINID 207 (453)
T ss_pred HHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 7655542 13689999974 2 467888887753 66776555543 35566667777776543 23444
Q ss_pred EEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 251 LIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
+|- .++.-+.+.+++-.+.+.+.++.
T Consensus 208 li~-------GlPgqt~e~~~~~l~~~~~l~~~ 233 (453)
T PRK09249 208 LIY-------GLPKQTPESFARTLEKVLELRPD 233 (453)
T ss_pred EEc-------cCCCCCHHHHHHHHHHHHhcCCC
Confidence 441 23334667777777777777654
No 111
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=98.45 E-value=1.3e-05 Score=80.76 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=101.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCC-CCCCCC---HHHHHHHHHHHHHHhc--CCcceEEEeeCCCCc-CChhhHHHHHHH
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGG-FSRNLS---SHEIVGQVLAIEEIFK--HRVTNVVFMGMGEPM-LNLKSVLEAHRC 184 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~-~~r~lt---~~EIv~qv~~~~~~~~--~~v~~Ivf~G~GEPl-ln~~~v~~~i~~ 184 (327)
.+++|-. .=|+.+|.||...... ...... .+.+++++....+.+. .++..|.|.| |+|+ ++.+.+.++++.
T Consensus 51 ~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgG-GTPs~l~~~~l~~ll~~ 128 (453)
T PRK13347 51 VSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGG-GTPTILNPDQFERLMAA 128 (453)
T ss_pred eEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcC-cccccCCHHHHHHHHHH
Confidence 4555554 3499999999864322 122221 3455566654443332 3578899999 9999 578899999999
Q ss_pred hhhccCCCC-ccEEEEcCCc--H-HHHHHHHhcCCCcceeecccCCCC----------cHHHHHHHHHHHHhcCCc-ceE
Q 043340 185 LNKDVQIGQ-RMITISTVGV--P-NTIKKLASYKLQSTLAIRSAGVND----------QVEHAVELAELLHEWGRG-HHV 249 (327)
Q Consensus 185 l~~~~gi~~-r~itisTnG~--~-~~i~~L~~~~~~v~lavSI~GvND----------~~e~a~~L~~~l~~l~~~-~~v 249 (327)
+++.+++.. ..++++||+- . +.++.|.+.|.. .+.|.+.+++| +.+++.+.++.++..+.. ..+
T Consensus 129 i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~-rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~ 207 (453)
T PRK13347 129 LRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFN-RASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINF 207 (453)
T ss_pred HHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 976555421 2688999874 2 457788877653 56666555553 355677777777776532 234
Q ss_pred EEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 250 NLIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 250 nLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
.||- .++.-+.+.+.+-.+.+.+.+..
T Consensus 208 dli~-------GlPgqt~e~~~~tl~~~~~l~p~ 234 (453)
T PRK13347 208 DLIY-------GLPHQTVESFRETLDKVIALSPD 234 (453)
T ss_pred eEEE-------eCCCCCHHHHHHHHHHHHhcCCC
Confidence 4542 12223566777767777666654
No 112
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=98.44 E-value=9.8e-06 Score=79.63 Aligned_cols=165 Identities=11% Similarity=0.131 Sum_probs=101.5
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc-CChhhHHHHHHHhhhc
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGFS---RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM-LNLKSVLEAHRCLNKD 188 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~~---r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl-ln~~~v~~~i~~l~~~ 188 (327)
+++|-. +-|+.+|.||.-...... ..-.++.+++++..........++.|.|.| |+|+ ++.+.+.++++.+++.
T Consensus 3 ~lYihi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gG-Gtpt~l~~~~l~~ll~~i~~~ 80 (377)
T PRK08599 3 SAYIHI-PFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGG-GTPTALSAEQLERLLTAIHRN 80 (377)
T ss_pred eEEEEe-CCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCC-CCcccCCHHHHHHHHHHHHHh
Confidence 345544 349999999986432111 112355677777443221123577787777 9998 5778999999999765
Q ss_pred cCCCC-ccEEEEcCCc--H-HHHHHHHhcCCCcceeec------------------------------------------
Q 043340 189 VQIGQ-RMITISTVGV--P-NTIKKLASYKLQSTLAIR------------------------------------------ 222 (327)
Q Consensus 189 ~gi~~-r~itisTnG~--~-~~i~~L~~~~~~v~lavS------------------------------------------ 222 (327)
+++.. ..+++++|.- . +.++.|.+.|.. .+.+.
T Consensus 81 ~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~-rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~ 159 (377)
T PRK08599 81 LPLSGLEEFTFEANPGDLTKEKLQVLKDSGVN-RISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIY 159 (377)
T ss_pred CCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeec
Confidence 55532 2688989863 2 346666665421 12211
Q ss_pred -ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC---------CCCCcHHHH----HHHHHHHHhCCCe
Q 043340 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---------YQRPYKKAV----LAFAGALESHKIT 283 (327)
Q Consensus 223 -I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~---------~~~p~~e~i----~~f~~~L~~~gi~ 283 (327)
+|| ++.+++.+..+++..++ ..++.+-|+.+.+++. +..|+.+.. +...+.|.+.|..
T Consensus 160 GlPg--qt~~~~~~~l~~~~~l~-~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 231 (377)
T PRK08599 160 ALPG--QTIEDFKESLAKALALD-IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH 231 (377)
T ss_pred CCCC--CCHHHHHHHHHHHHccC-CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 444 56788999999988876 3566666666666543 233444433 3456677777765
No 113
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=98.41 E-value=1e-05 Score=79.37 Aligned_cols=164 Identities=16% Similarity=0.212 Sum_probs=97.0
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC-ChhhHHHHHHHhhhc
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGFSRNL---SSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML-NLKSVLEAHRCLNKD 188 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~~r~l---t~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll-n~~~v~~~i~~l~~~ 188 (327)
+++|-. +=|+.+|.||........... .++.+++++..... ..+++.|.|.| |+|++ +.+.+..+++.+++
T Consensus 5 ~lYiHi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~--~~~~~~i~~gG-Gtps~l~~~~l~~L~~~i~~- 79 (374)
T PRK05799 5 SLYIHI-PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTK--NKKIKSIFIGG-GTPTYLSLEALEILKETIKK- 79 (374)
T ss_pred EEEEEe-CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcC--CCceeEEEECC-CcccCCCHHHHHHHHHHHHh-
Confidence 455544 349999999987543222222 24455555542211 23467777777 99995 66666666666643
Q ss_pred cCCC-CccEEEEcCCc--H-HHHHHHHhcCCCcceeec----------------------------------------cc
Q 043340 189 VQIG-QRMITISTVGV--P-NTIKKLASYKLQSTLAIR----------------------------------------SA 224 (327)
Q Consensus 189 ~gi~-~r~itisTnG~--~-~~i~~L~~~~~~v~lavS----------------------------------------I~ 224 (327)
+++. .-.++++||.. . +.++.|.+.|.. .+.|. |-
T Consensus 80 ~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~-rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~ 158 (374)
T PRK05799 80 LNKKEDLEFTVEGNPGTFTEEKLKILKSMGVN-RLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMF 158 (374)
T ss_pred CCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCC-EEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Confidence 3321 12689999863 2 346666665421 12111 22
Q ss_pred CC-CCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC---------CCCCcHHHHH----HHHHHHHhCCCe
Q 043340 225 GV-NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---------YQRPYKKAVL----AFAGALESHKIT 283 (327)
Q Consensus 225 Gv-ND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~---------~~~p~~e~i~----~f~~~L~~~gi~ 283 (327)
|+ +++.+++.+..+++..++ ..++.+.++.+.++++ +..|+.+... ...+.|.+.|..
T Consensus 159 GlPgqt~e~~~~~l~~~~~l~-~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 230 (374)
T PRK05799 159 GLPNQTLEDWKETLEKVVELN-PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYH 230 (374)
T ss_pred CCCCCCHHHHHHHHHHHHhcC-CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 32 456889999999998876 4678887777776643 3446655433 344567777764
No 114
>PLN02428 lipoic acid synthase
Probab=98.38 E-value=3.8e-05 Score=74.87 Aligned_cols=173 Identities=16% Similarity=0.127 Sum_probs=108.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC----CcCChhhHHHHHHHhhh
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE----PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE----Plln~~~v~~~i~~l~~ 187 (327)
.|+.+ ...||+.+|.||+-+.......+.++|+.+.+..+.+ .+++.|+|++ |. |-...+.+.++++.+++
T Consensus 103 aT~mi-lg~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~---~Glk~vvltS-g~rddl~D~ga~~~~elir~Ir~ 177 (349)
T PLN02428 103 ATIMI-LGDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIAS---WGVDYVVLTS-VDRDDLPDGGSGHFAETVRRLKQ 177 (349)
T ss_pred EEEEE-ecCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHH---cCCCEEEEEE-cCCCCCCcccHHHHHHHHHHHHH
Confidence 34434 4589999999999865332334556777776665543 3678999999 74 44556678888888875
Q ss_pred c-cCCCCccEEEEcCCc---HHHHHHHHhcCCCc---cee----------------------------------e-c--c
Q 043340 188 D-VQIGQRMITISTVGV---PNTIKKLASYKLQS---TLA----------------------------------I-R--S 223 (327)
Q Consensus 188 ~-~gi~~r~itisTnG~---~~~i~~L~~~~~~v---~la----------------------------------v-S--I 223 (327)
. .++ ++.+.|-+. .+.++.|.+.|++. ++. + | |
T Consensus 178 ~~P~i---~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~M 254 (349)
T PLN02428 178 LKPEI---LVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIM 254 (349)
T ss_pred hCCCc---EEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEE
Confidence 3 234 676665543 23567776665321 000 0 0 4
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC---CCCCcHHHHHHHHHHHHhCCCeE-----EEcCCCCcc
Q 043340 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---YQRPYKKAVLAFAGALESHKITT-----SIRQTRGLD 293 (327)
Q Consensus 224 ~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~---~~~p~~e~i~~f~~~L~~~gi~v-----~vR~~~G~d 293 (327)
=|+-++++++.++.++++.++. ..+.+-.|-...... -+-..+++-+.+.++..+.|... .||.|.-.+
T Consensus 255 vGLGET~Edv~e~l~~Lrelgv-d~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrssy~a~ 331 (349)
T PLN02428 255 LGLGETDEEVVQTMEDLRAAGV-DVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRSSYKAG 331 (349)
T ss_pred EecCCCHHHHHHHHHHHHHcCC-CEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccchhhhH
Confidence 4666889999999999999762 233332442211111 12235688889999999999864 377776544
No 115
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.36 E-value=3.1e-05 Score=74.81 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=107.1
Q ss_pred CCCCCCCCCCCCCC---CCC--CCCCCHHHHHHHHHHHHHHhcCC-cceEEEeeCCC--CcCChhhHHHHHHHhhhccCC
Q 043340 120 VGCPLRCSFCATGK---GGF--SRNLSSHEIVGQVLAIEEIFKHR-VTNVVFMGMGE--PMLNLKSVLEAHRCLNKDVQI 191 (327)
Q Consensus 120 ~GCnl~C~fC~t~~---~~~--~r~lt~~EIv~qv~~~~~~~~~~-v~~Ivf~G~GE--Plln~~~v~~~i~~l~~~~gi 191 (327)
.+|+-+|.||.-.. .+. ...++.+||++......+. + .+-+..++ |+ + -..+.+.++++.+++..|+
T Consensus 59 g~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~---Ga~r~c~~aa-gr~~~-~~~~~i~~~v~~Vk~~~~l 133 (335)
T COG0502 59 GCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAA---GATRFCMGAA-GRGPG-RDMEEVVEAIKAVKEELGL 133 (335)
T ss_pred CCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHc---CCceEEEEEe-ccCCC-ccHHHHHHHHHHHHHhcCc
Confidence 56799999998742 222 3468899999998887652 3 34444444 55 4 5668899999999877888
Q ss_pred CCccEEEEcCCcH--HHHHHHHhcCCCc---ceeec----------------------------------ccCCCCcHHH
Q 043340 192 GQRMITISTVGVP--NTIKKLASYKLQS---TLAIR----------------------------------SAGVNDQVEH 232 (327)
Q Consensus 192 ~~r~itisTnG~~--~~i~~L~~~~~~v---~lavS----------------------------------I~GvND~~e~ 232 (327)
.+++ |.|.. ...++|.+.|++. +|.-| |=|+..+.+|
T Consensus 134 ---e~c~-slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eD 209 (335)
T COG0502 134 ---EVCA-SLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVED 209 (335)
T ss_pred ---HHhh-ccCCCCHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHH
Confidence 7777 45553 4688999886431 12112 7789999988
Q ss_pred HHHHHHHHHhcCCcceEEEEeccCCCCCCCC---CCcHHHHHHHHHHHHhCCCeEEEcCCCCcccc
Q 043340 233 AVELAELLHEWGRGHHVNLIPFNPIEGSDYQ---RPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295 (327)
Q Consensus 233 a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~---~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di~ 295 (327)
--+++..|+.++....|-+-.+||++|.++. +.+.-+..+...+.+=.=-...||.+-|++..
T Consensus 210 ri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~ 275 (335)
T COG0502 210 RAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETM 275 (335)
T ss_pred HHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccc
Confidence 7777778887753456667778899988765 33332222222222222222456665555443
No 116
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=98.32 E-value=4.2e-05 Score=75.13 Aligned_cols=165 Identities=13% Similarity=0.199 Sum_probs=97.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCC---CCCH----HHHHHHHHHHHHHhc---CCcceEEEeeCCCCc-CChhhHHHH
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGFSR---NLSS----HEIVGQVLAIEEIFK---HRVTNVVFMGMGEPM-LNLKSVLEA 181 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~~r---~lt~----~EIv~qv~~~~~~~~---~~v~~Ivf~G~GEPl-ln~~~v~~~ 181 (327)
+++|-. +=|+.+|.||.-......+ .-.. +.+.+++....+.++ ..++.|.|-| |.|+ ++.+.+.++
T Consensus 4 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~l 81 (375)
T PRK05628 4 GVYVHV-PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGG-GTPSLLGAEGLARV 81 (375)
T ss_pred EEEEEe-CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCC-CccccCCHHHHHHH
Confidence 344433 3499999999864321111 1233 344445444433331 3467777777 9998 567888899
Q ss_pred HHHhhhccCCCC-ccEEEEcCCc--H-HHHHHHHhcCCCcceee------------------------------------
Q 043340 182 HRCLNKDVQIGQ-RMITISTVGV--P-NTIKKLASYKLQSTLAI------------------------------------ 221 (327)
Q Consensus 182 i~~l~~~~gi~~-r~itisTnG~--~-~~i~~L~~~~~~v~lav------------------------------------ 221 (327)
++.+++.+++.. -.+++++|.- . +.++.|.+.|.. .+.+
T Consensus 82 l~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~ 160 (375)
T PRK05628 82 LDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFT-RVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEH 160 (375)
T ss_pred HHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 988876555522 2578888753 2 346666655421 1111
Q ss_pred ---c----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC---------CCCCcHHHHH----HHHHHHHhCC
Q 043340 222 ---R----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---------YQRPYKKAVL----AFAGALESHK 281 (327)
Q Consensus 222 ---S----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~---------~~~p~~e~i~----~f~~~L~~~g 281 (327)
. +|| .+.+++.+..+++..++ ..++.+.++.+.++.+ +..|+.+... ...+.|++.|
T Consensus 161 v~~dli~GlPg--qt~~~~~~tl~~~~~l~-~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G 237 (375)
T PRK05628 161 VNLDLIYGTPG--ESDDDWRASLDAALEAG-VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAG 237 (375)
T ss_pred EEEEEeccCCC--CCHHHHHHHHHHHHhcC-CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcC
Confidence 1 455 45788888889888876 4678777777665542 3445554443 3445566667
Q ss_pred Ce
Q 043340 282 IT 283 (327)
Q Consensus 282 i~ 283 (327)
..
T Consensus 238 ~~ 239 (375)
T PRK05628 238 FD 239 (375)
T ss_pred CC
Confidence 54
No 117
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=98.28 E-value=4.3e-05 Score=73.14 Aligned_cols=159 Identities=12% Similarity=0.169 Sum_probs=94.5
Q ss_pred CCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc-CChhhHHHHHHHhhhccCCCCccEEEEc
Q 043340 125 RCSFCATGKGGFSR---NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM-LNLKSVLEAHRCLNKDVQIGQRMITIST 200 (327)
Q Consensus 125 ~C~fC~t~~~~~~r---~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl-ln~~~v~~~i~~l~~~~gi~~r~itisT 200 (327)
+|.||.....+... ....++|.+|+....+.+...-..++|.|.|.|+ +..+.+.++++.+.+...+ ..+++.|
T Consensus 39 gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~~l~~~i~~~~~~--~~isi~t 116 (302)
T TIGR01212 39 GCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLKEMYEQALSYDDV--VGLSVGT 116 (302)
T ss_pred CcccCCCCCCccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHHHHHHHHhCCCCE--EEEEEEe
Confidence 79999875443222 1234566677766555443222444566659999 5667788888877542111 2566666
Q ss_pred CC--cHH-HHH---HHHhcCCCcceeec---------------------------------------ccCC-CCcHHHHH
Q 043340 201 VG--VPN-TIK---KLASYKLQSTLAIR---------------------------------------SAGV-NDQVEHAV 234 (327)
Q Consensus 201 nG--~~~-~i~---~L~~~~~~v~lavS---------------------------------------I~Gv-ND~~e~a~ 234 (327)
.- +.+ .++ +|.+.+....+.+- |-|. .++.+++.
T Consensus 117 rpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~ 196 (302)
T TIGR01212 117 RPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMM 196 (302)
T ss_pred cCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHH
Confidence 43 222 233 33333321122221 3232 46789999
Q ss_pred HHHHHHHhcCCcceEEEEeccCCCCC---------CCCCCcHHH-HHHHHHHHHhCCCeEEE
Q 043340 235 ELAELLHEWGRGHHVNLIPFNPIEGS---------DYQRPYKKA-VLAFAGALESHKITTSI 286 (327)
Q Consensus 235 ~L~~~l~~l~~~~~vnLIp~np~~~~---------~~~~p~~e~-i~~f~~~L~~~gi~v~v 286 (327)
+.++++..++ ...+.+.|+.|.+++ .|..++.++ ++.....++.....+.|
T Consensus 197 ~t~~~l~~l~-~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i 257 (302)
T TIGR01212 197 ETAKIVSLLD-VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVI 257 (302)
T ss_pred HHHHHHHhcC-CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEE
Confidence 9999999986 467888888888764 366667666 66777777766655443
No 118
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=98.27 E-value=0.00011 Score=74.97 Aligned_cols=168 Identities=13% Similarity=0.246 Sum_probs=100.1
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCC--CCCCC---HHHHHHHHHHHHHHh---cCCcceEEEeeCCCCcC-ChhhHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGF--SRNLS---SHEIVGQVLAIEEIF---KHRVTNVVFMGMGEPML-NLKSVLEA 181 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~--~r~lt---~~EIv~qv~~~~~~~---~~~v~~Ivf~G~GEPll-n~~~v~~~ 181 (327)
..+++|-. +-||.+|.||....... .+.+. .+.+++++....+.. +.++..|.|.| |+|++ +.+.+.++
T Consensus 163 ~~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGG-GTPt~L~~~~L~~L 240 (488)
T PRK08207 163 EVSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGG-GTPTSLTAEELERL 240 (488)
T ss_pred ceEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeC-CCccCCCHHHHHHH
Confidence 35677765 57999999998654311 12221 234455555443322 23577888888 99985 67888888
Q ss_pred HHHhhhcc-CCCC-ccEEEEc-C--CcH-HHHHHHHhcCCCcceeec---------------------------------
Q 043340 182 HRCLNKDV-QIGQ-RMITIST-V--GVP-NTIKKLASYKLQSTLAIR--------------------------------- 222 (327)
Q Consensus 182 i~~l~~~~-gi~~-r~itisT-n--G~~-~~i~~L~~~~~~v~lavS--------------------------------- 222 (327)
++.+.+.+ +++. +.++++. + .+. +.++.|.+.|.. .+.|.
T Consensus 241 l~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~-RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf 319 (488)
T PRK08207 241 LEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVD-RISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGF 319 (488)
T ss_pred HHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Confidence 88886544 4321 2456643 2 222 346666655432 22222
Q ss_pred ----------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC-------CCCCcHHHH----HHHHHHHHhCC
Q 043340 223 ----------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD-------YQRPYKKAV----LAFAGALESHK 281 (327)
Q Consensus 223 ----------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~-------~~~p~~e~i----~~f~~~L~~~g 281 (327)
+|| ++.+++.+..+++..++ ..++.+-++.+.+++. +..|+.++. +...+.|+++|
T Consensus 320 ~~In~DLI~GLPg--Et~ed~~~tl~~l~~L~-pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~G 396 (488)
T PRK08207 320 DNINMDLIIGLPG--EGLEEVKHTLEEIEKLN-PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELG 396 (488)
T ss_pred CeEEEEEEeCCCC--CCHHHHHHHHHHHHhcC-cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 444 56788888888888876 4677777777665542 345666554 34455567777
Q ss_pred CeE
Q 043340 282 ITT 284 (327)
Q Consensus 282 i~v 284 (327)
..-
T Consensus 397 y~~ 399 (488)
T PRK08207 397 YVP 399 (488)
T ss_pred CHh
Confidence 653
No 119
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.26 E-value=3.5e-05 Score=75.81 Aligned_cols=120 Identities=24% Similarity=0.342 Sum_probs=84.5
Q ss_pred ecCCCCCCCCCCCCCCC-C--CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-CCcCC-hhhHHHHHHHhhhcc-CC
Q 043340 118 SQVGCPLRCSFCATGKG-G--FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-EPMLN-LKSVLEAHRCLNKDV-QI 191 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~-~--~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-EPlln-~~~v~~~i~~l~~~~-gi 191 (327)
.+..|+.+|.||.-... + ....++.+||++.+....+ .+++.+.++| | .|... .+.+.++++.+++.+ ++
T Consensus 66 ~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~---~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~~~i 141 (371)
T PRK07360 66 FTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVK---RGATEVCIQG-GLHPAADSLEFYLEILEAIKEEFPDI 141 (371)
T ss_pred cchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHh---CCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 35789999999997432 1 1125899999998887654 4789999998 8 57776 778999999997543 34
Q ss_pred CCccEEEE----------cCCcH--HHHHHHHhcCCCccee------------------ec-------------------
Q 043340 192 GQRMITIS----------TVGVP--NTIKKLASYKLQSTLA------------------IR------------------- 222 (327)
Q Consensus 192 ~~r~itis----------TnG~~--~~i~~L~~~~~~v~la------------------vS------------------- 222 (327)
+++.. +.|.. +.+++|.++|++.... .|
T Consensus 142 ---~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~ 218 (371)
T PRK07360 142 ---HLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTT 218 (371)
T ss_pred ---ceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCce
Confidence 55532 45764 3588888776531110 11
Q ss_pred ---ccCCCCcHHHHHHHHHHHHhcC
Q 043340 223 ---SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 223 ---I~GvND~~e~a~~L~~~l~~l~ 244 (327)
|=|...+.+|.-+.+.+++.++
T Consensus 219 sg~i~G~gEt~edrv~~l~~lr~l~ 243 (371)
T PRK07360 219 STMMYGHVETPEHRIDHLLILREIQ 243 (371)
T ss_pred eeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 6677788888888888888875
No 120
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.25 E-value=5.1e-05 Score=74.11 Aligned_cols=93 Identities=24% Similarity=0.331 Sum_probs=63.9
Q ss_pred EEecCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc-CChhhHHHHHHHhhhcc-C
Q 043340 116 VSSQVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM-LNLKSVLEAHRCLNKDV-Q 190 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl-ln~~~v~~~i~~l~~~~-g 190 (327)
+..+.+|+.+|.||.-.... ....++++||++++....+ .+++.|.+.| |+.. +.++.+.++++.+++.+ +
T Consensus 52 in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~---~G~~~v~l~~-G~~p~~~~~~~~e~i~~Ik~~~p~ 127 (351)
T TIGR03700 52 LNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA---PGATEVHIVG-GLHPNLPFEWYLDMIRTLKEAYPD 127 (351)
T ss_pred cccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH---CCCcEEEEec-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 44568999999999975421 1123899999998887653 4789999998 8755 34568889999997643 3
Q ss_pred CCCccEEEE----------cCCcH--HHHHHHHhcCC
Q 043340 191 IGQRMITIS----------TVGVP--NTIKKLASYKL 215 (327)
Q Consensus 191 i~~r~itis----------TnG~~--~~i~~L~~~~~ 215 (327)
+ ++... +.|.. +.+++|.+.|+
T Consensus 128 i---~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGl 161 (351)
T TIGR03700 128 L---HVKAFTAVEIHHFSKISGLPTEEVLDELKEAGL 161 (351)
T ss_pred c---eEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 4 44332 24552 24788887764
No 121
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=98.25 E-value=0.0001 Score=73.94 Aligned_cols=168 Identities=16% Similarity=0.203 Sum_probs=101.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC-CCCCCC---CHHHHHHHHHHHHHHh-cCCcceEEEeeCCCCcC-ChhhHHHHHHHh
Q 043340 112 LTACVSSQVGCPLRCSFCATGKG-GFSRNL---SSHEIVGQVLAIEEIF-KHRVTNVVFMGMGEPML-NLKSVLEAHRCL 185 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~-~~~r~l---t~~EIv~qv~~~~~~~-~~~v~~Ivf~G~GEPll-n~~~v~~~i~~l 185 (327)
.+++|-. +=|+.+|.||..... +..... ..+.+++++....+.. +..+..|.|.| |+|++ +.+.+.++++.+
T Consensus 40 ~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~Ll~~i 117 (430)
T PRK08208 40 LSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGG-GTPTLLNAAELEKLFDSV 117 (430)
T ss_pred eEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcC-CccccCCHHHHHHHHHHH
Confidence 4566655 459999999986433 221111 2345556655443322 12467788877 99986 677888888888
Q ss_pred hhccCCCC--ccEEEEcCCc--H-HHHHHHHhcCCCcceeec--------------------------------------
Q 043340 186 NKDVQIGQ--RMITISTVGV--P-NTIKKLASYKLQSTLAIR-------------------------------------- 222 (327)
Q Consensus 186 ~~~~gi~~--r~itisTnG~--~-~~i~~L~~~~~~v~lavS-------------------------------------- 222 (327)
++.++++. ..++++||.- . +.++.|.+.|.. .+.+.
T Consensus 118 ~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~ 196 (430)
T PRK08208 118 ERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVN-RLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNI 196 (430)
T ss_pred HHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCC-EEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 76555532 2588999863 2 346666655421 11111
Q ss_pred --ccC-CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCC---CCcHHHH----HHHHHHHHhCCCe
Q 043340 223 --SAG-VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ---RPYKKAV----LAFAGALESHKIT 283 (327)
Q Consensus 223 --I~G-vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~---~p~~e~i----~~f~~~L~~~gi~ 283 (327)
|-| .+++.+++.+..+++..++ ..++.+.|+.+.++..+. .++.+.. +...+.|.+.|..
T Consensus 197 dlI~GlP~qt~e~~~~~l~~~~~l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 197 DLIYGIPGQTHASWMESLDQALVYR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 222 2366788999999988876 468888888877665432 2333332 3455667777765
No 122
>PRK00955 hypothetical protein; Provisional
Probab=98.19 E-value=4e-05 Score=79.61 Aligned_cols=143 Identities=24% Similarity=0.358 Sum_probs=86.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCC-CCCCHHHHHHHHHHHHHHhcCCcceEE---------EeeCC----------
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFS-RNLSSHEIVGQVLAIEEIFKHRVTNVV---------FMGMG---------- 169 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~-r~lt~~EIv~qv~~~~~~~~~~v~~Iv---------f~G~G---------- 169 (327)
-....|.++.||+.+|.||..+.. |.. +..+.++|++++....+. .+.+.++ +.|+.
T Consensus 291 ~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~--~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c 368 (620)
T PRK00955 291 EVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEM--PDFKGYIHDVGGPTANFRKMACKKQLKCGAC 368 (620)
T ss_pred eEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhc--cCCeEEEEeCCCCCccccccccccccccccc
Confidence 345667778999999999998754 443 788999999999887643 2333332 22210
Q ss_pred --------CCcC----ChhhHHHHHHHhhhccCCCCccEEEEcC---Cc--H----HHHHHHHhcCC--Cccee------
Q 043340 170 --------EPML----NLKSVLEAHRCLNKDVQIGQRMITISTV---GV--P----NTIKKLASYKL--QSTLA------ 220 (327)
Q Consensus 170 --------EPll----n~~~v~~~i~~l~~~~gi~~r~itisTn---G~--~----~~i~~L~~~~~--~v~la------ 220 (327)
+|-- +...+.++++.+++--|+ +++.|++. .+ . ..+++|++..+ .++++
T Consensus 369 ~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gv--krv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd 446 (620)
T PRK00955 369 KNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGV--KKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISD 446 (620)
T ss_pred cccccccCccccccCcChHHHHHHHHHHhccCCc--eEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCCh
Confidence 1111 123467777777542344 34555432 01 1 13555655311 01111
Q ss_pred ---------------------------------------ecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC
Q 043340 221 ---------------------------------------IRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260 (327)
Q Consensus 221 ---------------------------------------vSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~ 260 (327)
+..|| +++++++++++|++.++ ...+++.+|.|.+++
T Consensus 447 ~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPG--ETeEDf~et~eflkel~-~~~~qV~~fTP~PGT 522 (620)
T PRK00955 447 RVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPG--STLEDAIELAEYTKDLG-YQPEQVQDFYPTPGT 522 (620)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCC--CCHHHHHHHHHHHHHcC-CCcceeeeeecCCCc
Confidence 11444 67899999999999986 367888899998763
No 123
>PRK08445 hypothetical protein; Provisional
Probab=98.17 E-value=5.1e-05 Score=74.12 Aligned_cols=121 Identities=21% Similarity=0.262 Sum_probs=83.5
Q ss_pred EecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-CCcCChhhHHHHHHHhhhcc-CC
Q 043340 117 SSQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-EPMLNLKSVLEAHRCLNKDV-QI 191 (327)
Q Consensus 117 ssq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-EPlln~~~v~~~i~~l~~~~-gi 191 (327)
..+.+|+.+|.||.-... .-...++++||++.+....+ .+.+.|++.| | .|.+..+.+.++++.+++.+ .+
T Consensus 47 n~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~---~g~~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~p~i 122 (348)
T PRK08445 47 NYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLA---IGGTQILFQG-GVHPKLKIEWYENLVSHIAQKYPTI 122 (348)
T ss_pred ccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHH---cCCCEEEEec-CCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 346899999999998642 22235799999999988765 3578999998 6 45567788899999997643 23
Q ss_pred CCccEE-EEc---------CCc--HHHHHHHHhcCCC----cceeec---------------------------------
Q 043340 192 GQRMIT-IST---------VGV--PNTIKKLASYKLQ----STLAIR--------------------------------- 222 (327)
Q Consensus 192 ~~r~it-isT---------nG~--~~~i~~L~~~~~~----v~lavS--------------------------------- 222 (327)
++. .+. .|. .+.+++|.+.|++ ..+.+.
T Consensus 123 ---~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~ 199 (348)
T PRK08445 123 ---TIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKST 199 (348)
T ss_pred ---EEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeee
Confidence 332 211 233 2457888887754 112211
Q ss_pred ---ccCCCCcHHHHHHHHHHHHhcC
Q 043340 223 ---SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 223 ---I~GvND~~e~a~~L~~~l~~l~ 244 (327)
|=|.-++.+|..+.+.++++++
T Consensus 200 sg~i~G~~Et~edr~~~l~~lreLq 224 (348)
T PRK08445 200 ATMMFGTVENDEEIIEHWERIRDLQ 224 (348)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHH
Confidence 6677788888888888888875
No 124
>PRK08444 hypothetical protein; Provisional
Probab=98.15 E-value=0.00011 Score=71.80 Aligned_cols=94 Identities=16% Similarity=0.277 Sum_probs=66.8
Q ss_pred EEecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhcc-CC
Q 043340 116 VSSQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV-QI 191 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~-gi 191 (327)
+..+.-|..+|.||.-... .....++.+||++.+....+ .+++.|.+.|.+-|...++.+.++++.+++.+ ++
T Consensus 53 In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~---~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i 129 (353)
T PRK08444 53 INPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK---RGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNL 129 (353)
T ss_pred cccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH---CCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 3446789999999997431 11235899999999987754 47899999985667777888999999998653 44
Q ss_pred CCccEEEE----------cCCc-H-HHHHHHHhcCC
Q 043340 192 GQRMITIS----------TVGV-P-NTIKKLASYKL 215 (327)
Q Consensus 192 ~~r~itis----------TnG~-~-~~i~~L~~~~~ 215 (327)
++..- ..|. . +.+.+|.+.|+
T Consensus 130 ---~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl 162 (353)
T PRK08444 130 ---HVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGV 162 (353)
T ss_pred ---eEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 66541 2343 3 35777777764
No 125
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.14 E-value=5.6e-05 Score=74.83 Aligned_cols=192 Identities=21% Similarity=0.285 Sum_probs=121.0
Q ss_pred CCCcEEEEEEecCCCeEEEEeeccCC-----------CCCCceeEEEEEecCCCCCCCCCCCC--CCCCCCCCCCHHHHH
Q 043340 80 ADGTVKLLIKLEDNRLIETVGIPVED-----------EKGPMRLTACVSSQVGCPLRCSFCAT--GKGGFSRNLSSHEIV 146 (327)
Q Consensus 80 ~dgt~K~l~~l~dg~~iE~V~i~~~~-----------~~g~~r~tlcVssq~GCnl~C~fC~t--~~~~~~r~lt~~EIv 146 (327)
++|-+.+-=+-+.+-.+|.++.- | .+|. .-++ .- |+. ...++.-..|.++|-
T Consensus 33 ~~gkv~i~K~CpEHG~f~dlyw~--D~e~y~~~~~~~~~g~----~g~~--~~-------CFa~A~~ag~vYEpt~eqi~ 97 (475)
T COG1964 33 EDGKVWIRKKCPEHGEFEDLYYG--DAELYYRFARWEFEGK----FGVN--NE-------CFAYAEEAGYIYEPTLEQIR 97 (475)
T ss_pred cCCeEEEEecCCCCCeeeeeeec--cHHHHHHHHhhcccCC----cCCC--Cc-------CcCchhhcCcccCCCHHHHH
Confidence 57766655556666677777732 2 2331 1111 11 554 455677788888776
Q ss_pred HHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-----HHHHHHHhcCCCcceee
Q 043340 147 GQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-----NTIKKLASYKLQSTLAI 221 (327)
Q Consensus 147 ~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-----~~i~~L~~~~~~v~lav 221 (327)
.-+..+.+.-..+...|-|+| |||++. +.+.++++.+++ .|+ .||.+.|||+- ...++|.++++. .+.+
T Consensus 98 ~Ml~~lk~e~p~~~~aIq~tG-GEPTvr-~DL~eiv~~a~e-~g~--~hVqinTnGirlA~~~~~~~~l~~ag~~-tvYl 171 (475)
T COG1964 98 EMLRNLKKEHPVGANAVQFTG-GEPTLR-DDLIEIIKIARE-EGY--DHVQLNTNGIRLAFDPEYVKKLREAGVN-TVYL 171 (475)
T ss_pred HHHHHHHhcCCCCCceeEecC-CCccch-hhHHHHHHHHhh-cCc--cEEEEccCceeeccCHHHHHHHHhcCCc-EEEE
Confidence 666555442123468999999 999999 779999999964 466 59999999982 246777777632 3333
Q ss_pred c-------------------------------------ccCCCCcHHHHHHHHHHHH-hcCCcceEEEEeccCCCC----
Q 043340 222 R-------------------------------------SAGVNDQVEHAVELAELLH-EWGRGHHVNLIPFNPIEG---- 259 (327)
Q Consensus 222 S-------------------------------------I~GvND~~e~a~~L~~~l~-~l~~~~~vnLIp~np~~~---- 259 (327)
| ++|+||. ++..+.+|.. .++....||..|+.-.+.
T Consensus 172 sFDG~~e~~~~~~~~eIk~alen~r~~g~~svVLVptl~rgvNd~--~lG~iirfa~~n~dvVrgVnfQPVsltGr~~~~ 249 (475)
T COG1964 172 SFDGVTPKTNWKNHWEIKQALENCRKAGLPSVVLVPTLIRGVNDH--ELGAIIRFALNNIDVVRGVNFQPVSLTGRMPQK 249 (475)
T ss_pred ecCCCCCCchhhHhhhhHHHHHHHHhcCCCcEEEEeehhcccChH--HHHHHHHHHHhccccccccceEEEEEecccchh
Confidence 3 7788885 4777777765 332334567666653221
Q ss_pred ---------------------------CCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcccccccchh
Q 043340 260 ---------------------------SDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301 (327)
Q Consensus 260 ---------------------------~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL 301 (327)
..|+-|+..-+-+|...|....... -.+..+||.-
T Consensus 250 ~r~~~RITIPd~iK~ieeQT~g~i~~~d~yPvp~~~~isr~v~al~~~~~~~-------~s~h~~cg~a 311 (475)
T COG1964 250 ERERFRITIPDAIKKIEEQTDGEISKDDWYPVPIAVPISRFVEALTGDPKYE-------LTSHPACGAA 311 (475)
T ss_pred hhhheEeechhHHHhHHHhcCCeeeccccccCcchhhHHHHHHHHcCCCcee-------eeccCCCCce
Confidence 1356677777888888887655442 1244677754
No 126
>PRK05927 hypothetical protein; Provisional
Probab=98.09 E-value=7.1e-05 Score=73.18 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=63.7
Q ss_pred cCCCCCCCCCCCCCCC--CCC-CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCChhhHHHHHHHhhhcc-CCCC
Q 043340 119 QVGCPLRCSFCATGKG--GFS-RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLNLKSVLEAHRCLNKDV-QIGQ 193 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~--~~~-r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln~~~v~~~i~~l~~~~-gi~~ 193 (327)
+..|+.+|.||+-... ... ..++.+||++.+....+ .+++.|.|+| |+ |-.-.+.+.++++.+++.+ ++
T Consensus 52 Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~---~G~~~i~i~g-G~~p~~~~e~~~~~i~~ik~~~p~l-- 125 (350)
T PRK05927 52 TNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVS---AGVKTVLLQG-GVHPQLGIDYLEELVRITVKEFPSL-- 125 (350)
T ss_pred chhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHH---CCCCEEEEeC-CCCCCCCHHHHHHHHHHHHHHCCCC--
Confidence 4789999999997532 112 26899999999887654 4688999999 88 4456678889999997653 34
Q ss_pred ccE------E----EEcCCcH--HHHHHHHhcCC
Q 043340 194 RMI------T----ISTVGVP--NTIKKLASYKL 215 (327)
Q Consensus 194 r~i------t----isTnG~~--~~i~~L~~~~~ 215 (327)
++ + -.+.|.. +.+++|.+.|+
T Consensus 126 -~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl 158 (350)
T PRK05927 126 -HPHFFSAVEIAHAAQVSGISTEQALERLWDAGQ 158 (350)
T ss_pred -cccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCc
Confidence 32 0 1235764 35788887765
No 127
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=98.04 E-value=0.001 Score=63.99 Aligned_cols=163 Identities=12% Similarity=0.206 Sum_probs=93.6
Q ss_pred EEecCCCCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcc---eEEEeeCC---CCcC-ChhhHHHHHHH
Q 043340 116 VSSQVGCPL----RCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVT---NVVFMGMG---EPML-NLKSVLEAHRC 184 (327)
Q Consensus 116 Vssq~GCnl----~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~---~Ivf~G~G---EPll-n~~~v~~~i~~ 184 (327)
+..+.||++ +|.||...... .+..++++|.+|+....+.++.... --+|++ | .|.. ..+.+.++++.
T Consensus 19 i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~s-gsf~D~~~~~~~~~~~i~~~ 96 (313)
T TIGR01210 19 ILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTS-GSFLDDREVPKETRNYIFEK 96 (313)
T ss_pred EEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecC-CCcCCcCcCCHHHHHHHHHH
Confidence 445699999 59999754433 2456899999999888765532211 123666 5 5544 44566677777
Q ss_pred hhhccC-CCCccEEEEcCC--c-HHHHHHHHhcCCCcceeec--------------------------------------
Q 043340 185 LNKDVQ-IGQRMITISTVG--V-PNTIKKLASYKLQSTLAIR-------------------------------------- 222 (327)
Q Consensus 185 l~~~~g-i~~r~itisTnG--~-~~~i~~L~~~~~~v~lavS-------------------------------------- 222 (327)
+.+ .+ + ..++++|.- + .+.++.|.+.|....+.+-
T Consensus 97 l~~-~~~~--~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~ 173 (313)
T TIGR01210 97 IAQ-RDNL--KEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKA 173 (313)
T ss_pred HHh-cCCc--ceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 754 33 3 357777753 2 2346666665532112221
Q ss_pred -----ccCCCC--cHHHHHHHHHHHHhcCCcceEEEEeccCCCCC---------CCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 223 -----SAGVND--QVEHAVELAELLHEWGRGHHVNLIPFNPIEGS---------DYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 223 -----I~GvND--~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~---------~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
+|+.++ +.+++.+.++++..++ .++.+.|.++.+++ .|++|..-.+.+..+.+++.+..+.
T Consensus 174 ~~i~G~P~~se~ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~~~~~~~~ 250 (313)
T TIGR01210 174 YLLFKPPFLSEKEAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKIGAEVL 250 (313)
T ss_pred EEEecCCCCChhhhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCeEE
Confidence 344332 3455666677777654 57777777777654 3667744444443334444444443
No 128
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=97.93 E-value=0.00074 Score=67.00 Aligned_cols=166 Identities=13% Similarity=0.213 Sum_probs=99.6
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCC--CCCHH----HHHHHHHHHHHHh-cCCcceEEEeeCCCCcC-ChhhHHHHHHH
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGFSR--NLSSH----EIVGQVLAIEEIF-KHRVTNVVFMGMGEPML-NLKSVLEAHRC 184 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~~r--~lt~~----EIv~qv~~~~~~~-~~~v~~Ivf~G~GEPll-n~~~v~~~i~~ 184 (327)
+++|-. +=|+-+|.||.-....... ....+ .+..++....... +..++.|-|-| |.|++ ..+.+.++++.
T Consensus 21 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GG-GTPs~L~~~~L~~ll~~ 98 (394)
T PRK08898 21 SLYVHF-PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGG-GTPSLLSAAGLDRLLSD 98 (394)
T ss_pred EEEEEe-CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECC-CCcCCCCHHHHHHHHHH
Confidence 455544 3499999999854322111 12223 3444443322211 24577777777 99996 66889999999
Q ss_pred hhhccCCCC-ccEEEEcCCc---HHHHHHHHhcCCC-cceee------------------------------------c-
Q 043340 185 LNKDVQIGQ-RMITISTVGV---PNTIKKLASYKLQ-STLAI------------------------------------R- 222 (327)
Q Consensus 185 l~~~~gi~~-r~itisTnG~---~~~i~~L~~~~~~-v~lav------------------------------------S- 222 (327)
+++.+.++. ..|++++|-- .+.++.|.+.|.. +.+.| .
T Consensus 99 i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dl 178 (394)
T PRK08898 99 VRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDL 178 (394)
T ss_pred HHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEE
Confidence 976665532 4789988742 2456777666432 11111 1
Q ss_pred ---ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC-----CCCcHHHHHHH----HHHHHhCCCe
Q 043340 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-----QRPYKKAVLAF----AGALESHKIT 283 (327)
Q Consensus 223 ---I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~-----~~p~~e~i~~f----~~~L~~~gi~ 283 (327)
+|| ++.+++.+-++.+..++ ..++.+-++.+.++..+ ..|+.+...+. .+.|.+.|..
T Consensus 179 I~GlPg--qt~~~~~~~l~~~~~l~-p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 248 (394)
T PRK08898 179 MYALPG--QTLDEALADVETALAFG-PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYA 248 (394)
T ss_pred EcCCCC--CCHHHHHHHHHHHHhcC-CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 555 46778888778887776 46888888887776543 23555554333 4566677754
No 129
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=97.93 E-value=0.0006 Score=67.60 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=95.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHh-cCCcceEEEeeCCCC-cCChhhHHHHHHHh
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV----GQVLAIEEIF-KHRVTNVVFMGMGEP-MLNLKSVLEAHRCL 185 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv----~qv~~~~~~~-~~~v~~Ivf~G~GEP-lln~~~v~~~i~~l 185 (327)
.+++|-. +=|.-+|.||.-......+ ...++-+ .++....+.+ +..++.|-|.| |.| ++..+.+.++++.+
T Consensus 12 ~~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~l~~ll~~i 88 (390)
T PRK06582 12 LSIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGG-GTPSLMNPVIVEGIINKI 88 (390)
T ss_pred eEEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHccCCceeEEEECC-CccccCCHHHHHHHHHHH
Confidence 4555554 4599999999864322112 2223333 3333332222 23577787777 999 56777788888888
Q ss_pred hhccCCCC-ccEEEEcCCc---HHHHHHHHhcCCCcceeec---------------------------------------
Q 043340 186 NKDVQIGQ-RMITISTVGV---PNTIKKLASYKLQSTLAIR--------------------------------------- 222 (327)
Q Consensus 186 ~~~~gi~~-r~itisTnG~---~~~i~~L~~~~~~v~lavS--------------------------------------- 222 (327)
++.++++. ..||+++|.- .+.++.|.+.|.. .+.+.
T Consensus 89 ~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~Gvn-RiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~Dl 167 (390)
T PRK06582 89 SNLAIIDNQTEITLETNPTSFETEKFKAFKLAGIN-RVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDL 167 (390)
T ss_pred HHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCC-EEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 76444432 3699999974 2457777666532 22221
Q ss_pred ---ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC---------CCCCCcHHHHH----HHHHHHHhCCCe
Q 043340 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS---------DYQRPYKKAVL----AFAGALESHKIT 283 (327)
Q Consensus 223 ---I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~---------~~~~p~~e~i~----~f~~~L~~~gi~ 283 (327)
+||.+ .++..+-++.+..++ ..++.+-++...+++ .+..|++++.. ...+.|.++|..
T Consensus 168 I~GlPgqt--~e~~~~~l~~~~~l~-p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 241 (390)
T PRK06582 168 IYARSGQT--LKDWQEELKQAMQLA-TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF 241 (390)
T ss_pred ecCCCCCC--HHHHHHHHHHHHhcC-CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 55543 455555555555554 367777777665543 24556655543 445567777754
No 130
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=97.91 E-value=0.00083 Score=66.29 Aligned_cols=165 Identities=12% Similarity=0.146 Sum_probs=98.0
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHHhc-CCcceEEEeeCCCCcC-ChhhHHHHHHHhh
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGFSRNLS----SHEIVGQVLAIEEIFK-HRVTNVVFMGMGEPML-NLKSVLEAHRCLN 186 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~~r~lt----~~EIv~qv~~~~~~~~-~~v~~Ivf~G~GEPll-n~~~v~~~i~~l~ 186 (327)
+++|-. +=|.-+|.||.-......+ .. .+.+.+++....+.++ ..+..|-|-| |.|++ +.+.+.++++.++
T Consensus 6 ~lYiHI-PFC~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GG-GTPs~l~~~~L~~ll~~i~ 82 (380)
T PRK09057 6 GLYVHW-PFCLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTGPRTLTSIFFGG-GTPSLMQPETVAALLDAIA 82 (380)
T ss_pred EEEEEe-CCcCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCC-CccccCCHHHHHHHHHHHH
Confidence 455544 3399999999864322222 22 3345555554433332 3577777777 99996 5678889999887
Q ss_pred hccCCCC-ccEEEEcCCc---HHHHHHHHhcCCC-c------------------------------------ceeec---
Q 043340 187 KDVQIGQ-RMITISTVGV---PNTIKKLASYKLQ-S------------------------------------TLAIR--- 222 (327)
Q Consensus 187 ~~~gi~~-r~itisTnG~---~~~i~~L~~~~~~-v------------------------------------~lavS--- 222 (327)
+.+.+.. ..||+++|-- .+.++.|.+.|+. + ++.+.
T Consensus 83 ~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~ 162 (380)
T PRK09057 83 RLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIY 162 (380)
T ss_pred HhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeec
Confidence 6565533 2689988852 2456666665421 0 11111
Q ss_pred -ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC---------CCCCCcHH----HHHHHHHHHHhCCCe
Q 043340 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS---------DYQRPYKK----AVLAFAGALESHKIT 283 (327)
Q Consensus 223 -I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~---------~~~~p~~e----~i~~f~~~L~~~gi~ 283 (327)
+||. +.++..+-.+.+..++ ..++.+-|+.+.+++ .+..|+.+ ..+...+.|.+.|..
T Consensus 163 GlPgq--t~~~~~~~l~~~~~l~-p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~ 234 (380)
T PRK09057 163 ARPGQ--TLAAWRAELKEALSLA-ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLP 234 (380)
T ss_pred CCCCC--CHHHHHHHHHHHHhcC-CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 5554 4555555555555554 467888888776653 34456655 345666677778874
No 131
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=97.89 E-value=0.00096 Score=66.32 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=100.2
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCC---C--C-CCCHH----HHHHHHHHHHHHhcCCcceEEEeeCCCCc-CChhhHHH
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGGF---S--R-NLSSH----EIVGQVLAIEEIFKHRVTNVVFMGMGEPM-LNLKSVLE 180 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~~---~--r-~lt~~----EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl-ln~~~v~~ 180 (327)
.+++|-. +=|+.+|.||.-..... . + .-..+ .+.+++.... ..+..++.|-|-| |.|. ++.+.+.+
T Consensus 11 ~~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~-~~~~~i~~iy~GG-GTps~l~~~~l~~ 87 (400)
T PRK07379 11 TSAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITP-SFGQPLQTVFFGG-GTPSLLSVEQLER 87 (400)
T ss_pred cEEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhh-ccCCceeEEEECC-CccccCCHHHHHH
Confidence 4555554 34999999998643211 1 1 11122 3333333221 1123577777777 9999 47788999
Q ss_pred HHHHhhhccCCCC-ccEEEEcCC--cH-HHHHHHHhcCCC-cc-------------------------------------
Q 043340 181 AHRCLNKDVQIGQ-RMITISTVG--VP-NTIKKLASYKLQ-ST------------------------------------- 218 (327)
Q Consensus 181 ~i~~l~~~~gi~~-r~itisTnG--~~-~~i~~L~~~~~~-v~------------------------------------- 218 (327)
+++.+++.+++.. ..|++++|- +. +.++.|.+.|.. +.
T Consensus 88 ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~ 167 (400)
T PRK07379 88 ILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIEN 167 (400)
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 9999876566532 368888773 22 346666655421 11
Q ss_pred eeec----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC---------CCCCcHHHHH----HHHHHHHhCC
Q 043340 219 LAIR----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---------YQRPYKKAVL----AFAGALESHK 281 (327)
Q Consensus 219 lavS----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~---------~~~p~~e~i~----~f~~~L~~~g 281 (327)
+.+. +|| .+.+++.+.++++..++ ..++.+-++.+.+++. +..|++++.. ...+.|.++|
T Consensus 168 v~~dlI~GlPg--qt~e~~~~tl~~~~~l~-p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G 244 (400)
T PRK07379 168 FSLDLISGLPH--QTLEDWQASLEAAIALN-PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAG 244 (400)
T ss_pred EEEEeecCCCC--CCHHHHHHHHHHHHcCC-CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1111 555 56788999999888886 4788888888776642 3456665543 4556677777
Q ss_pred Ce
Q 043340 282 IT 283 (327)
Q Consensus 282 i~ 283 (327)
..
T Consensus 245 y~ 246 (400)
T PRK07379 245 YE 246 (400)
T ss_pred Cc
Confidence 65
No 132
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=97.79 E-value=0.00087 Score=67.39 Aligned_cols=158 Identities=9% Similarity=0.130 Sum_probs=95.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhc
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGGFSRNL---SSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD 188 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~~~r~l---t~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~ 188 (327)
..++|-. +=|+.+|.||.-......... -.+.+.+++....+ .+..+..|-|-| |-|++..+.+.++++.+++.
T Consensus 53 ~~LYvHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~-~~~~~~siy~GG-GTPs~l~~~L~~ll~~i~~~ 129 (433)
T PRK08629 53 YMLYAHV-PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKE-LGYDFESMYVGG-GTTTILEDELAKTLELAKKL 129 (433)
T ss_pred EEEEEEe-CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHh-cCCceEEEEECC-CccccCHHHHHHHHHHHHHh
Confidence 4555544 349999999987543222211 13455555554332 234566676666 99999888888888888765
Q ss_pred cCCCCccEEEEcCCc--H-HHHHHHHhcCCC----------------------------------------cceeec---
Q 043340 189 VQIGQRMITISTVGV--P-NTIKKLASYKLQ----------------------------------------STLAIR--- 222 (327)
Q Consensus 189 ~gi~~r~itisTnG~--~-~~i~~L~~~~~~----------------------------------------v~lavS--- 222 (327)
+++ ..|+++++-- . +.++.|... .. .++.+.
T Consensus 130 f~i--~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~ 206 (433)
T PRK08629 130 FSI--KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIF 206 (433)
T ss_pred CCC--ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEc
Confidence 665 3688877732 2 223333221 10 011111
Q ss_pred -ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC------CCCCcHHHHHHHHHHHH
Q 043340 223 -SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD------YQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 -I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~------~~~p~~e~i~~f~~~L~ 278 (327)
+|| ++.+++.+-.+++..++ ..++.+-|+...++.. ...|+++...++++++.
T Consensus 207 GlPg--qT~e~~~~~l~~~~~l~-p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~ 266 (433)
T PRK08629 207 NFPG--QTDEVLQHDLDIAKRLD-PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIIN 266 (433)
T ss_pred cCCC--CCHHHHHHHHHHHHhCC-CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHH
Confidence 555 45788888888888876 4788888887655432 33467666666666553
No 133
>PRK09234 fbiC FO synthase; Reviewed
Probab=97.77 E-value=0.0014 Score=70.94 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=88.8
Q ss_pred ceeEEEEE----ecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCChhhHHHH
Q 043340 110 MRLTACVS----SQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLNLKSVLEA 181 (327)
Q Consensus 110 ~r~tlcVs----sq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln~~~v~~~ 181 (327)
.+.+.++. .+..|+.+|.||.-... .-...++++||++++....+ .+++.|.+.| |+ |-...+.+.++
T Consensus 520 ~~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~---~G~tev~i~g-G~~p~~~~~~y~~l 595 (843)
T PRK09234 520 DDVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWV---AGATEVCMQG-GIHPELPGTGYADL 595 (843)
T ss_pred CeEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHH---CCCCEEEEec-CCCCCcCHHHHHHH
Confidence 34555443 47999999999997542 12345899999999988765 4789999998 76 55677788899
Q ss_pred HHHhhhcc-CCCCccEEEE----------cCCc--HHHHHHHHhcCCCcc---------------e---eec--------
Q 043340 182 HRCLNKDV-QIGQRMITIS----------TVGV--PNTIKKLASYKLQST---------------L---AIR-------- 222 (327)
Q Consensus 182 i~~l~~~~-gi~~r~itis----------TnG~--~~~i~~L~~~~~~v~---------------l---avS-------- 222 (327)
++.+++.+ ++ +|... +.|+ .+.+.+|.+.|++-. + .++
T Consensus 596 ir~IK~~~p~i---~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i 672 (843)
T PRK09234 596 VRAVKARVPSM---HVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVV 672 (843)
T ss_pred HHHHHHhCCCe---eEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHH
Confidence 99997643 44 55433 2355 245778877764200 0 001
Q ss_pred --------------ccCCCCcHHHHHHHHHHHHhcC
Q 043340 223 --------------SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 223 --------------I~GvND~~e~a~~L~~~l~~l~ 244 (327)
|=|..++++|..+...+|++++
T Consensus 673 ~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~LreLq 708 (843)
T PRK09234 673 TTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQ 708 (843)
T ss_pred HHHHHcCCCcccceEEcCCCCHHHHHHHHHHHHhcC
Confidence 5577789999999999999875
No 134
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.71 E-value=0.0029 Score=64.17 Aligned_cols=165 Identities=18% Similarity=0.256 Sum_probs=99.1
Q ss_pred cCCCCCCCCCCCCCCC-C-C-CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC--CcCChhhHHHHHHHhhhcc---C
Q 043340 119 QVGCPLRCSFCATGKG-G-F-SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE--PMLNLKSVLEAHRCLNKDV---Q 190 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~-~-~-~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE--Plln~~~v~~~i~~l~~~~---g 190 (327)
+..|+-+|.||.-... + . ...|+.+||++++....+ .+++.+.+.+ || |-...+.+.++++.+++.. |
T Consensus 91 SN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~---~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~~~g 166 (469)
T PRK09613 91 SNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALED---MGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKHGNG 166 (469)
T ss_pred cCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHH---CCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhccccC
Confidence 3789999999987422 1 2 246899999999987754 4688888877 66 3445678888988886421 2
Q ss_pred CCCccEEEEcCCc--HHHHHHHHhcCCCcc----------------eeec--------------------------ccCC
Q 043340 191 IGQRMITISTVGV--PNTIKKLASYKLQST----------------LAIR--------------------------SAGV 226 (327)
Q Consensus 191 i~~r~itisTnG~--~~~i~~L~~~~~~v~----------------lavS--------------------------I~Gv 226 (327)
. -++++|+- |. .+.+++|.+.|++.. .... |=|+
T Consensus 167 ~-i~~v~ini-g~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GL 244 (469)
T PRK09613 167 E-IRRVNVNI-APTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGL 244 (469)
T ss_pred c-ceeeEEEe-ecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcC
Confidence 1 13456652 33 346778877764310 0000 4466
Q ss_pred CCcHHHHHHHHHHHHhcC----C-cceEEEEeccCCCCCCC-CC---CcHHHHHHHHHHHH----hCCCeEEEcCC
Q 043340 227 NDQVEHAVELAELLHEWG----R-GHHVNLIPFNPIEGSDY-QR---PYKKAVLAFAGALE----SHKITTSIRQT 289 (327)
Q Consensus 227 ND~~e~a~~L~~~l~~l~----~-~~~vnLIp~np~~~~~~-~~---p~~e~i~~f~~~L~----~~gi~v~vR~~ 289 (327)
.+..+|.-.++-.++.+. . ...|.+=.++|.++.++ .+ .+++++.++..+++ ..|+.++-|-+
T Consensus 245 ge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~ 320 (469)
T PRK09613 245 YDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRES 320 (469)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCC
Confidence 777777777666565541 0 01122223677777665 22 36666665555543 35777776654
No 135
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=97.71 E-value=0.0017 Score=63.88 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=92.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHH----HHHH-HHHHHHHh-cCCcceEEEeeCCCCcC-ChhhHHHHHHH
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHE----IVGQ-VLAIEEIF-KHRVTNVVFMGMGEPML-NLKSVLEAHRC 184 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~E----Iv~q-v~~~~~~~-~~~v~~Ivf~G~GEPll-n~~~v~~~i~~ 184 (327)
.+++|-. +=|.-+|.||.-..... ..-..++ ++.+ +....... ...++.|-|-| |.|++ ..+.+.++++.
T Consensus 7 ~~lYiHI-PFC~~~C~yC~f~~~~~-~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GG-GTPs~l~~~~l~~ll~~ 83 (370)
T PRK06294 7 LALYIHI-PFCTKKCHYCSFYTIPY-KEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGG-GTPSLVPPALIQDILKT 83 (370)
T ss_pred eEEEEEe-CCccCcCCCCcCcccCC-CccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECC-CccccCCHHHHHHHHHH
Confidence 4555544 34999999997533211 1112222 2333 21111111 12355666666 99997 45678888888
Q ss_pred hhhccCCCCccEEEEcCCc---HHHHHHHHhcCCCcceee-------------------------------------c--
Q 043340 185 LNKDVQIGQRMITISTVGV---PNTIKKLASYKLQSTLAI-------------------------------------R-- 222 (327)
Q Consensus 185 l~~~~gi~~r~itisTnG~---~~~i~~L~~~~~~v~lav-------------------------------------S-- 222 (327)
+++..+ ..|++++|.- .+.++.|.+.|.. .+.+ +
T Consensus 84 i~~~~~---~eit~E~~P~~~~~~~l~~l~~~G~n-rislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~D 159 (370)
T PRK06294 84 LEAPHA---TEITLEANPENLSESYIRALALTGIN-RISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSID 159 (370)
T ss_pred HHhCCC---CeEEEEeCCCCCCHHHHHHHHHCCCC-EEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 854322 3799998853 2346666655421 1111 1
Q ss_pred ----ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC---------CCCcHHHHH----HHHHHHHhCCCe
Q 043340 223 ----SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY---------QRPYKKAVL----AFAGALESHKIT 283 (327)
Q Consensus 223 ----I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~---------~~p~~e~i~----~f~~~L~~~gi~ 283 (327)
+|| ++.+++.+..+++..++ ..++.+-++.+.+++.+ ..|+++... ...+.|.+.|..
T Consensus 160 li~GlPg--qt~~~~~~~l~~~~~l~-~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (370)
T PRK06294 160 LIYGLPT--QSLSDFIVDLHQAITLP-ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT 234 (370)
T ss_pred eecCCCC--CCHHHHHHHHHHHHccC-CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 444 46788888888888876 46788878777666431 235554433 345567777753
No 136
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=97.67 E-value=0.0034 Score=61.43 Aligned_cols=167 Identities=12% Similarity=0.113 Sum_probs=99.9
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHh-cCCcceEEEeeCCCCcC-ChhhHHHHHHHh
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKGGFSRNL---SSHEIVGQVLAIEEIF-KHRVTNVVFMGMGEPML-NLKSVLEAHRCL 185 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~~~~r~l---t~~EIv~qv~~~~~~~-~~~v~~Ivf~G~GEPll-n~~~v~~~i~~l 185 (327)
..+++|-. +=|+-+|.||.-... ..... -.+..++++....+.+ +.+++.|-|-| |-|++ ..+.+.++++.+
T Consensus 6 ~~~lYiHi-PFC~~kC~yC~f~~~-~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GG-GTPs~L~~~~l~~ll~~i 82 (353)
T PRK05904 6 TKHLYIHI-PFCQYICTFCDFKRI-LKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGG-GTPNCLNDQLLDILLSTI 82 (353)
T ss_pred eeEEEEEe-CCccCcCCCCCCeec-cCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECC-CccccCCHHHHHHHHHHH
Confidence 45566654 339999999986543 11111 1223344444322222 23567777777 99976 777888888888
Q ss_pred hhccCCCCccEEEEcCCc---HHHHHHHHhcCCC-c-------------------------------------ceeec--
Q 043340 186 NKDVQIGQRMITISTVGV---PNTIKKLASYKLQ-S-------------------------------------TLAIR-- 222 (327)
Q Consensus 186 ~~~~gi~~r~itisTnG~---~~~i~~L~~~~~~-v-------------------------------------~lavS-- 222 (327)
++.+. +...+++.+|.- .+.++.|.+.|.. + ++.++
T Consensus 83 ~~~~~-~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI 161 (353)
T PRK05904 83 KPYVD-NNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFL 161 (353)
T ss_pred HHhcC-CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 65432 123689998863 2346666555421 0 01111
Q ss_pred --ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC----CCCcH----HHHHHHHHHHHhCCCeE
Q 043340 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY----QRPYK----KAVLAFAGALESHKITT 284 (327)
Q Consensus 223 --I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~----~~p~~----e~i~~f~~~L~~~gi~v 284 (327)
+|| .+.+++++..+++..++ ..++.+-++.+.+++.+ ..+++ +..+...+.|++.|..-
T Consensus 162 ~GlPg--qt~e~~~~tl~~~~~l~-p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 230 (353)
T PRK05904 162 YCLPI--LKLKDLDEVFNFILKHK-INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKR 230 (353)
T ss_pred ecCCC--CCHHHHHHHHHHHHhcC-CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 444 66789999999999886 46888888887776432 12332 33455667788888754
No 137
>PRK05926 hypothetical protein; Provisional
Probab=97.65 E-value=0.0013 Score=64.84 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=80.2
Q ss_pred ecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc-CChhhHHHHHHHhhhcc-CCC
Q 043340 118 SQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM-LNLKSVLEAHRCLNKDV-QIG 192 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl-ln~~~v~~~i~~l~~~~-gi~ 192 (327)
.+..|..+|.||.-... .....++++||++.+... + .+++.|.+.| |+.. ..++.+.++++.+++.+ ++
T Consensus 74 ~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~---~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~i- 147 (370)
T PRK05926 74 PTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P---SPITETHIVA-GCFPSCNLAYYEELFSKIKQNFPDL- 147 (370)
T ss_pred cCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h---cCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCCe-
Confidence 46899999999995432 122458899999999876 3 3688888888 7753 46678889999987653 45
Q ss_pred CccEEEEcC----------Cc-HH-HHHHHHhcCCCc-cee------------e-----c--------------------
Q 043340 193 QRMITISTV----------GV-PN-TIKKLASYKLQS-TLA------------I-----R-------------------- 222 (327)
Q Consensus 193 ~r~itisTn----------G~-~~-~i~~L~~~~~~v-~la------------v-----S-------------------- 222 (327)
++...|. |. .. .+++|.+.|++- +.. + +
T Consensus 148 --~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 148 --HIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred --eEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccC
Confidence 5554442 22 22 477888776421 100 0 0
Q ss_pred --ccCCCCcHHHHHHHHHHHHhcC
Q 043340 223 --SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 223 --I~GvND~~e~a~~L~~~l~~l~ 244 (327)
|=|.-++.+|.-+.+..|++++
T Consensus 226 gmi~G~gEt~edrv~~l~~Lr~Lq 249 (370)
T PRK05926 226 TMLCYHRETPEDIVTHMSKLRALQ 249 (370)
T ss_pred ceEEeCCCCHHHHHHHHHHHHhcC
Confidence 6677788888888888888876
No 138
>PRK09234 fbiC FO synthase; Reviewed
Probab=97.65 E-value=0.0022 Score=69.41 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=93.5
Q ss_pred ecCCCCCCCCCCCCCCC-C--CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCC----------------hhh
Q 043340 118 SQVGCPLRCSFCATGKG-G--FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLN----------------LKS 177 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~-~--~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln----------------~~~ 177 (327)
.+..|.-+|.||.-... + ....|+++||++.+....+ .+++.+.|+| |+ |-.. .+.
T Consensus 77 ~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~---~G~~e~l~t~-G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 77 LTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAA---AGCKEALFTL-GDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred CCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHH---CCCCEEEEec-CCCCccccccccccccccccccHHHH
Confidence 35789999999987532 1 2246899999999987654 4788899999 87 4432 367
Q ss_pred HHHHHHHhhhccCCCCccEEEEcCCc-HHHHHHHHhcCCCcce-----------------eec-----------------
Q 043340 178 VLEAHRCLNKDVQIGQRMITISTVGV-PNTIKKLASYKLQSTL-----------------AIR----------------- 222 (327)
Q Consensus 178 v~~~i~~l~~~~gi~~r~itisTnG~-~~~i~~L~~~~~~v~l-----------------avS----------------- 222 (327)
+.++++.+++..|+ ...++--.+ ...+..|.+.+....+ .+|
T Consensus 153 ~~~~~~~ik~~~gl---~p~i~~G~ls~~E~~~Lk~~g~s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~ 229 (843)
T PRK09234 153 VRAMAIRVLEETGL---LPHLNPGVMSWSELARLKPVAPSMGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGR 229 (843)
T ss_pred HHHHHHHHHHhcCC---CceeeeCCCCHHHHHHHHHhcCcCCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHH
Confidence 88888888765555 333322212 1234444433211000 000
Q ss_pred ---------ccCCCCcHHHHHHHHHHHHhcCC----cceEEEEeccCCCCCC---CCCCcHHHHHHHHHHHH
Q 043340 223 ---------SAGVNDQVEHAVELAELLHEWGR----GHHVNLIPFNPIEGSD---YQRPYKKAVLAFAGALE 278 (327)
Q Consensus 223 ---------I~GvND~~e~a~~L~~~l~~l~~----~~~vnLIp~np~~~~~---~~~p~~e~i~~f~~~L~ 278 (327)
|=|+-++.+|.-+....|+.++. ...+-+.+|.|.++.+ .+.++.++..+...+.+
T Consensus 230 lGi~~tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaR 301 (843)
T PRK09234 230 LSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVAR 301 (843)
T ss_pred cCCCccceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 55777888877777777776531 2235555777776554 45677777665555543
No 139
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=97.60 E-value=0.0038 Score=63.05 Aligned_cols=159 Identities=13% Similarity=0.188 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHH-h--cCCcceEEEeeCCCCcC-ChhhHHHHHHHhhhccCCCC-
Q 043340 122 CPLRCSFCATGKGGFSR---NLSSHEIVGQVLAIEEI-F--KHRVTNVVFMGMGEPML-NLKSVLEAHRCLNKDVQIGQ- 193 (327)
Q Consensus 122 Cnl~C~fC~t~~~~~~r---~lt~~EIv~qv~~~~~~-~--~~~v~~Ivf~G~GEPll-n~~~v~~~i~~l~~~~gi~~- 193 (327)
|+.+|.||.-......+ .-.++.+++++....+. + +..+..|-|-| |-|++ +.+.+.++++.+++.+.+..
T Consensus 71 C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GG-GTPs~L~~~~l~~ll~~i~~~~~l~~~ 149 (449)
T PRK09058 71 CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGG-GTPTALSAEDLARLITALREYLPLAPD 149 (449)
T ss_pred cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECC-CccccCCHHHHHHHHHHHHHhCCCCCC
Confidence 99999999753322111 11234455555543321 1 13466677766 99995 77888899988876555432
Q ss_pred ccEEEEcCC--cH-HHHHHHHhcCCC--------------------------------------cceeec----ccCCCC
Q 043340 194 RMITISTVG--VP-NTIKKLASYKLQ--------------------------------------STLAIR----SAGVND 228 (327)
Q Consensus 194 r~itisTnG--~~-~~i~~L~~~~~~--------------------------------------v~lavS----I~GvND 228 (327)
..||+++|- +. +.++.|.+.|.. .++.++ +|| .
T Consensus 150 ~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPg--q 227 (449)
T PRK09058 150 CEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPG--Q 227 (449)
T ss_pred CEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCC--C
Confidence 268888763 22 345555555421 111111 555 4
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC---------CCCC-cHHHHH----HHHHHHHhCCCeE
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD---------YQRP-YKKAVL----AFAGALESHKITT 284 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~---------~~~p-~~e~i~----~f~~~L~~~gi~v 284 (327)
+.++.++-.+++..++ ..++.+-++.+.++.. +..| +.++.. ...+.|.++|..-
T Consensus 228 T~e~~~~~l~~~~~l~-~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~ 296 (449)
T PRK09058 228 TPEIWQQDLAIVRDLG-LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWRQ 296 (449)
T ss_pred CHHHHHHHHHHHHhcC-CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 6778888888888876 4688888888877642 3344 444433 4456677788753
No 140
>PRK01254 hypothetical protein; Provisional
Probab=97.56 E-value=0.0038 Score=65.35 Aligned_cols=163 Identities=22% Similarity=0.311 Sum_probs=93.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCC-CCC-CCCCCHHHHHHHHHHHHHHhcCCcceEE---------EeeC--CC--------
Q 043340 112 LTACVSSQVGCPLRCSFCATGK-GGF-SRNLSSHEIVGQVLAIEEIFKHRVTNVV---------FMGM--GE-------- 170 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~-~~~-~r~lt~~EIv~qv~~~~~~~~~~v~~Iv---------f~G~--GE-------- 170 (327)
....|.+..||+.+|.||..+. .|. .+..+.++|++++..+.+.. .+++.++ +.|+ ..
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~-pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~ 450 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKV-PGFTGVISDLGGPTANMYRLRCKSPRAEQTCR 450 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCccccccccccccccccccc
Confidence 3466778899999999999874 343 47888999999998876421 3556666 4443 11
Q ss_pred ----------CcC--ChhhHHHHHHHhhhccCCCCccEEEEcCCc--------HHHHHHHHhcCCC--cceeec------
Q 043340 171 ----------PML--NLKSVLEAHRCLNKDVQIGQRMITISTVGV--------PNTIKKLASYKLQ--STLAIR------ 222 (327)
Q Consensus 171 ----------Pll--n~~~v~~~i~~l~~~~gi~~r~itisTnG~--------~~~i~~L~~~~~~--v~lavS------ 222 (327)
+-+ +...+.++++.+++--|+ ++|.|.+ |+ .+.++.+++..+. ++|++-
T Consensus 451 ~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGV--KkVrI~S-giR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~V 527 (707)
T PRK01254 451 RLSCVYPDICPHLDTDHEPTINLYRRARDLKGI--KKILIAS-GVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGP 527 (707)
T ss_pred cccccCcccccccCCCHHHHHHHHHHHHhCCCc--eEEEEEc-CCCccccccCHHHHHHHHHhCCccccccccccCCHHH
Confidence 111 223567777777543455 3555533 32 1246666664332 223322
Q ss_pred ccCCCC----cHHHHHHHHHHHH-hcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 223 SAGVND----QVEHAVELAELLH-EWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 223 I~GvND----~~e~a~~L~~~l~-~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
++.+|- ..++..++.+-++ .++ ..+.++||- -..|...++++.++..+.+++.+..
T Consensus 528 Lk~M~Kp~~~~~e~F~e~f~rirk~~g--k~q~Lipyf---IvGhPGeTeeDf~eLaefLkel~f~ 588 (707)
T PRK01254 528 LSKMMKPGMGSYDRFKELFDKYSKEAG--KEQYLIPYF---ISAHPGTTDEDMVNLALWLKKNRFR 588 (707)
T ss_pred HHHhCCCCcccHHHHHHHHHHHHHHCC--CCeEEEEeE---EEECCCCCHHHHHHHHHHHHHhCCC
Confidence 222222 2344444444333 322 346666652 2345566778888888888877754
No 141
>PTZ00413 lipoate synthase; Provisional
Probab=97.48 E-value=0.018 Score=56.72 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=107.8
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC--CCcCC--hhhHHHHHHHhhhc-cCCC
Q 043340 118 SQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG--EPMLN--LKSVLEAHRCLNKD-VQIG 192 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G--EPlln--~~~v~~~i~~l~~~-~gi~ 192 (327)
--..|.-+|.||+.........++++|+++....+.+ .+++.+|++. | +.|-. .+.+.++++.+++. .++
T Consensus 155 lG~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~---~Gl~~~VVTS-v~RDDL~D~ga~~~a~~I~~Ir~~~p~~- 229 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAE---MGVDYIVMTM-VDRDDLPDGGASHVARCVELIKESNPEL- 229 (398)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEE-EcCCCCChhhHHHHHHHHHHHHccCCCC-
Confidence 4678999999999865332466899999988887654 3566777776 4 33443 35678888888653 345
Q ss_pred CccEEEEcC---CcHHHHHHHHhcCCCc---ce---------------------------------ee---c--ccCCCC
Q 043340 193 QRMITISTV---GVPNTIKKLASYKLQS---TL---------------------------------AI---R--SAGVND 228 (327)
Q Consensus 193 ~r~itisTn---G~~~~i~~L~~~~~~v---~l---------------------------------av---S--I~GvND 228 (327)
.|.+++- |-.+.+++|.+.++++ || .+ | |=|+-+
T Consensus 230 --~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE 307 (398)
T PTZ00413 230 --LLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE 307 (398)
T ss_pred --eEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC
Confidence 6666652 3345678887765321 00 01 1 456778
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccC----CCCC-C-CCCCcHHHHHHHHHHHHhCCCeE-----EEcCCCCcc
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNP----IEGS-D-YQRPYKKAVLAFAGALESHKITT-----SIRQTRGLD 293 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np----~~~~-~-~~~p~~e~i~~f~~~L~~~gi~v-----~vR~~~G~d 293 (327)
+.+++.+++..|+.++ +.++|++. .... + .+-..+++-+++.++..+.|... .||.|.-.+
T Consensus 308 T~eEvie~m~dLrelG----VDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSSY~A~ 379 (398)
T PTZ00413 308 TEEEVRQTLRDLRTAG----VSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAG 379 (398)
T ss_pred CHHHHHHHHHHHHHcC----CcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccccchhcc
Confidence 8999999999898865 44555543 2211 1 12345688889999999999864 378776544
No 142
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.011 Score=56.61 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=87.5
Q ss_pred EEecCCCCCCCCCCCCCCCCCC-----CCCCHHH-HHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhh---
Q 043340 116 VSSQVGCPLRCSFCATGKGGFS-----RNLSSHE-IVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--- 186 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~~~~~~-----r~lt~~E-Iv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~--- 186 (327)
+++-.||..+|.||+...+... ..+.+++ +++.+......-+.+...|.+..+-+|..-.+.-..+.+.+.
T Consensus 33 inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~ 112 (297)
T COG1533 33 LNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEIL 112 (297)
T ss_pred cCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHH
Confidence 5566899999999998543221 2345565 666665544321234556666667899876444333333332
Q ss_pred hccCCCCccEEEEcCCc-H-HHHHHHHhcCC--CcceeecccCCC-----------Cc-HHHHHHHHHHHHhcCCcceEE
Q 043340 187 KDVQIGQRMITISTVGV-P-NTIKKLASYKL--QSTLAIRSAGVN-----------DQ-VEHAVELAELLHEWGRGHHVN 250 (327)
Q Consensus 187 ~~~gi~~r~itisTnG~-~-~~i~~L~~~~~--~v~lavSI~GvN-----------D~-~e~a~~L~~~l~~l~~~~~vn 250 (327)
...|. ++.|.|=.. + ..++-|.+... .+.+++||...+ .+ .+-++.+.++ .+.+....+.
T Consensus 113 ~~~~~---~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l-~eaGi~~~v~ 188 (297)
T COG1533 113 LKYGF---PVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKEL-SEAGIPVGLF 188 (297)
T ss_pred HHcCC---cEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHH-HHCCCeEEEE
Confidence 24566 788988543 2 23454443322 366777744322 11 2223333333 3334446666
Q ss_pred EEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeE
Q 043340 251 LIPFNPIEGSDYQRPYKKAVLAFAGALESHKITT 284 (327)
Q Consensus 251 LIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v 284 (327)
+-|.-|.. +.++++++...+...|...
T Consensus 189 v~PIiP~~-------~d~e~e~~l~~~~~ag~~~ 215 (297)
T COG1533 189 VAPIIPGL-------NDEELERILEAAAEAGARV 215 (297)
T ss_pred EecccCCC-------ChHHHHHHHHHHHHcCCCe
Confidence 66666543 2267777777777777665
No 143
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=97.26 E-value=0.0054 Score=60.45 Aligned_cols=65 Identities=31% Similarity=0.477 Sum_probs=51.5
Q ss_pred cCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCChhhHHHHHHHhhh
Q 043340 119 QVGCPLRCSFCATGKGG---FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~~---~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln~~~v~~~i~~l~~ 187 (327)
+.=|..+|.||.--... -...||++||.+++....+ .+++.|.|.| || |-..++...+.++.+++
T Consensus 66 TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~---~G~~Evli~g-G~~p~~~~~y~~~~~~~ik~ 134 (370)
T COG1060 66 TNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVK---RGITEVLIVG-GEHPELSLEYYEELFRTIKE 134 (370)
T ss_pred chhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHH---cCCeEEEEec-CcCCCcchHHHHHHHHHHHH
Confidence 46799999999864322 2347999999999988765 4799999999 76 77777888888888875
No 144
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=97.14 E-value=0.0071 Score=60.32 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=33.4
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEI 155 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~ 155 (327)
..+.|.++-||+.+|.||..+.....|..+++++++++....+.
T Consensus 198 ~~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~ 241 (490)
T COG1032 198 RAFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEE 241 (490)
T ss_pred eEEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHH
Confidence 35667778999999999999764335677788888888766443
No 145
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=96.42 E-value=0.07 Score=53.50 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=68.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHhcC--CcceEEEeeCCCCcC-ChhhHHHHHHH
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIV----GQVLAIEEIFKH--RVTNVVFMGMGEPML-NLKSVLEAHRC 184 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv----~qv~~~~~~~~~--~v~~Ivf~G~GEPll-n~~~v~~~i~~ 184 (327)
.+++|=. +=|.-.|.||.--..-..+.-..++.+ .++.......+. .++.|-|-| |.|.+ +++.+..++..
T Consensus 35 ~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GG-GTPslL~~~~l~~ll~~ 112 (416)
T COG0635 35 LSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGG-GTPSLLSPEQLERLLKA 112 (416)
T ss_pred eEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECC-CccccCCHHHHHHHHHH
Confidence 4555543 459999999986543333322333333 344444333333 477777777 99976 77788888888
Q ss_pred hhhccC-CCC-ccEEEEcCCc---HHHHHHHHhcCCCcceeecccCCCC
Q 043340 185 LNKDVQ-IGQ-RMITISTVGV---PNTIKKLASYKLQSTLAIRSAGVND 228 (327)
Q Consensus 185 l~~~~g-i~~-r~itisTnG~---~~~i~~L~~~~~~v~lavSI~GvND 228 (327)
+++.++ ++. .-||++.|-- ...++.+.+.|.. ++++-|-++||
T Consensus 113 l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN-RiSlGVQsf~~ 160 (416)
T COG0635 113 LRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVN-RISLGVQSFND 160 (416)
T ss_pred HHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCC-EEEeccccCCH
Confidence 876663 432 3689998853 2467888877643 33333444443
No 146
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=96.15 E-value=0.056 Score=53.58 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=73.1
Q ss_pred cceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEE-EEcCCcH--HHHHHHHhcCCCcceeec--------------
Q 043340 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMIT-ISTVGVP--NTIKKLASYKLQSTLAIR-------------- 222 (327)
Q Consensus 160 v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~it-isTnG~~--~~i~~L~~~~~~v~lavS-------------- 222 (327)
+..++.+|-|+++.. ..+....+.++.-+....-|++ ++.||.. ...+++.+.+++ .+.+|
T Consensus 79 ~~~~~~~~~~d~~c~-p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvd-ev~~SVhtT~p~lR~klm~ 156 (414)
T COG1625 79 VLGAKQCGNGDTFCY-PDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVD-EVYFSVHTTNPELRAKLMK 156 (414)
T ss_pred ccceeecCCCCcccC-cchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCC-eeEEEEeeCCHHHHHHHhc
Confidence 338888886777655 6688888887642212111333 4556652 346667776643 33333
Q ss_pred ---------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-----CCCCCcHHHH
Q 043340 223 ---------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-----DYQRPYKKAV 270 (327)
Q Consensus 223 ---------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-----~~~~p~~e~i 270 (327)
+||+||. +++.+..+-|..++. ..+.++.+-|++.. ..+.+.++++
T Consensus 157 n~~A~~~le~L~~f~~~~~~v~a~iVl~PGvNdg-e~L~kT~~dL~~~g~-~~~~~~~~~pvGlt~~n~~~i~~~t~~~l 234 (414)
T COG1625 157 NPNAEQLLELLRRFAERCIEVHAQIVLCPGVNDG-EELEKTLEDLEEWGA-HEVILMRVVPVGLTRYNRPGIRPPTPHEL 234 (414)
T ss_pred CCcHHHHHHHHHHHHHhhhheeeEEEEcCCcCcH-HHHHHHHHHHHHhCc-CceeEEEeecceeeecCCCCCCCCCHHHH
Confidence 9999985 678888877777642 33444433333321 3466788889
Q ss_pred HHHHHHHHh----CC-CeEE
Q 043340 271 LAFAGALES----HK-ITTS 285 (327)
Q Consensus 271 ~~f~~~L~~----~g-i~v~ 285 (327)
+.|.++.++ .| +.++
T Consensus 235 ~~~k~i~re~~~E~~~~~V~ 254 (414)
T COG1625 235 EEFKEIVREFDRELGSIRVT 254 (414)
T ss_pred HHHHHHHHHHHHhcCceEEe
Confidence 888877654 56 5553
No 147
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=95.88 E-value=0.98 Score=46.69 Aligned_cols=64 Identities=20% Similarity=0.393 Sum_probs=36.9
Q ss_pred CCCCC-CCCCCCCCCC---------CC---------CCCCCHHHHHHHHHHHHHHhcCCcceE--EEeeCCCCcCCh-hh
Q 043340 120 VGCPL-RCSFCATGKG---------GF---------SRNLSSHEIVGQVLAIEEIFKHRVTNV--VFMGMGEPMLNL-KS 177 (327)
Q Consensus 120 ~GCnl-~C~fC~t~~~---------~~---------~r~lt~~EIv~qv~~~~~~~~~~v~~I--vf~G~GEPlln~-~~ 177 (327)
.-||. +|.||..|.. +. .+.-...++.+.+..+.. ++..++.| .||| |-|+.-+ +.
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~-~g~~~~kvE~i~~G-GTft~l~~~y 153 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQ-IGHPVDKVELIIMG-GTFPARDLDY 153 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHH-hCCCCceEEEEEEC-CCcccCCHHH
Confidence 35995 7999998532 11 122334556555555544 34455444 8999 9999854 33
Q ss_pred HHHHHHHh
Q 043340 178 VLEAHRCL 185 (327)
Q Consensus 178 v~~~i~~l 185 (327)
...+++.+
T Consensus 154 ~~~fl~~~ 161 (522)
T TIGR01211 154 QEWFIKRC 161 (522)
T ss_pred HHHHHHHH
Confidence 44444444
No 148
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=95.68 E-value=0.21 Score=45.97 Aligned_cols=89 Identities=15% Similarity=0.306 Sum_probs=55.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcC--ChhhHHHHHHHhhhccCCCCcc
Q 043340 119 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PML--NLKSVLEAHRCLNKDVQIGQRM 195 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Pll--n~~~v~~~i~~l~~~~gi~~r~ 195 (327)
-.-|.++|++|..-...-.-..|.++++...+...+ .+..++.++| |- |=. -.+...+.++.+++..|+ .
T Consensus 18 G~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~k---kGy~g~llSG-Gm~srg~VPl~kf~d~lK~lke~~~l---~ 90 (275)
T COG1856 18 GAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEK---KGYEGCLLSG-GMDSRGKVPLWKFKDELKALKERTGL---L 90 (275)
T ss_pred ccceEecChHHHHHHHHHhcccchHHHHHHHHHHHh---cCceeEEEeC-CcCCCCCccHHHHHHHHHHHHHhhCe---E
Confidence 456999999998732211123444778777766654 5788999999 52 211 113356677777776677 5
Q ss_pred EEEEcCCcHH--HHHHHHhcCC
Q 043340 196 ITISTVGVPN--TIKKLASYKL 215 (327)
Q Consensus 196 itisTnG~~~--~i~~L~~~~~ 215 (327)
++-.+ |+++ .+++|.+++.
T Consensus 91 inaHv-GfvdE~~~eklk~~~v 111 (275)
T COG1856 91 INAHV-GFVDESDLEKLKEELV 111 (275)
T ss_pred EEEEe-eeccHHHHHHHHHhcC
Confidence 55544 5543 4667776543
No 149
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.66 E-value=0.81 Score=46.05 Aligned_cols=108 Identities=14% Similarity=0.252 Sum_probs=61.0
Q ss_pred cCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccE
Q 043340 119 QVGCPLRCSFCATGKGGF--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMI 196 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~~~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~i 196 (327)
...|+-+|.||+-.++.. ...|...+ -=.+ ...+ .-..|+++-|.| +.+. +++ .+++|+-.|
T Consensus 81 ~~~C~N~C~FCFidQlP~gmR~sLY~KD---DDyR-LSFL--~GnyiTLTNl~~-----~d~~---RI~--~~~lspl~i 144 (433)
T TIGR03279 81 LIQCNNRCPFCFIDQQPPGKRESLYLKD---DDYR-LSFL--YGSYLTLTNLPP-----AEWQ---RIE--QLRLSPLYV 144 (433)
T ss_pred ccccCCcCceEeccCCCCCCcCcceecc---Ccch-hhhh--ccceeeecCCCH-----HHHH---HHH--HcCCCCEEE
Confidence 357999999999976532 22222210 0001 1111 236777776442 2222 222 246676677
Q ss_pred EEEcCC---------------cHHHHHHHHhcCCCcceeec-ccCCCCcHHHHHHHHHHHHhc
Q 043340 197 TISTVG---------------VPNTIKKLASYKLQSTLAIR-SAGVNDQVEHAVELAELLHEW 243 (327)
Q Consensus 197 tisTnG---------------~~~~i~~L~~~~~~v~lavS-I~GvND~~e~a~~L~~~l~~l 243 (327)
+|.|-- +.+.+++|++.+++++.++= +||+||. +++++..+.|..+
T Consensus 145 SVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg-~~L~~Ti~dL~~~ 206 (433)
T TIGR03279 145 SVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDG-KHLERTLRDLAQF 206 (433)
T ss_pred EEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCH-HHHHHHHHHHHhh
Confidence 776532 12346778888777766644 9999996 4666666666654
No 150
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=95.26 E-value=0.087 Score=52.18 Aligned_cols=137 Identities=17% Similarity=0.245 Sum_probs=85.4
Q ss_pred eeEEEEEecCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHH-HHHHHhhh-
Q 043340 111 RLTACVSSQVGCPLRCSFCATGK-GGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVL-EAHRCLNK- 187 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~-~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~-~~i~~l~~- 187 (327)
..|.+||...||+--|.||.-+. -|..|....+.|++++..+.+ .+++.|++.|..=--.+ |+-. +.-.....
T Consensus 219 s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~---qG~KeVTLLGQNVNSyr-D~s~~~~~~a~~~~ 294 (552)
T KOG2492|consen 219 STTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAE---QGVKEVTLLGQNVNSYR-DNSAVQFSSAVPTN 294 (552)
T ss_pred cchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhh---cCceeeeeecccccccc-cchhhhhccCCccc
Confidence 57999999999999999999874 356677778899998887653 58999999993222222 2211 11111100
Q ss_pred -ccCCCCccEEEEcCCc--HHHHHHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEecc
Q 043340 188 -DVQIGQRMITISTVGV--PNTIKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 188 -~~gi~~r~itisTnG~--~~~i~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
..|++. ....-+.|+ ...+++++...++..+.+.-|...|-++++. ++++..+..+++--.|..
T Consensus 295 ~~~GFst-~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl---~li~~rdnickqihlPAq 361 (552)
T KOG2492|consen 295 LSPGFST-VYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVL---ELIRDRDNICKQIHLPAQ 361 (552)
T ss_pred cCCCcee-eecccCCCccHHHHHHHHhhhCcceEEEecCCCCCCChHHHH---HHHHhCcchhheeecccc
Confidence 134411 122234455 2457888887777778887888888876554 455565444554434544
No 151
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=95.16 E-value=1.3 Score=44.77 Aligned_cols=184 Identities=20% Similarity=0.304 Sum_probs=106.7
Q ss_pred ceeEEE-EEecCCCCCC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHH------hcCCcceEEEeeC---C-CCcCC
Q 043340 110 MRLTAC-VSSQVGCPLR----CSFCATGKGGFSRNLSSHEIVGQVLAIEEI------FKHRVTNVVFMGM---G-EPMLN 174 (327)
Q Consensus 110 ~r~tlc-Vssq~GCnl~----C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~------~~~~v~~Ivf~G~---G-EPlln 174 (327)
....+| +-++.||+-+ |+||..+..|...+.+++++++++..+-+. ++.+-.-..|+|- | =|--|
T Consensus 180 p~~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~Pn 259 (560)
T COG1031 180 PEYVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPN 259 (560)
T ss_pred cceEEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCC
Confidence 344454 5689999976 999999876777788899999999876432 1233344445543 3 24557
Q ss_pred hhhHHHHHHHhhhc-cCCCCccEEEEc-C-Cc----HHH----HHHHHhcCCCcceee-c----------ccCCCCcHHH
Q 043340 175 LKSVLEAHRCLNKD-VQIGQRMITIST-V-GV----PNT----IKKLASYKLQSTLAI-R----------SAGVNDQVEH 232 (327)
Q Consensus 175 ~~~v~~~i~~l~~~-~gi~~r~itisT-n-G~----~~~----i~~L~~~~~~v~lav-S----------I~GvND~~e~ 232 (327)
++.+.++.+-+++. .++. .+.++. | ++ ..+ ++-+.+.+-+-+++- - ...+|.++|+
T Consensus 260 PealekL~~Gir~~AP~l~--tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEE 337 (560)
T COG1031 260 PEALEKLFRGIRNVAPNLK--TLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEE 337 (560)
T ss_pred HHHHHHHHHHHHhhCCCCe--eeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHH
Confidence 88888888877642 3441 122221 1 11 112 445555544334331 1 6677889999
Q ss_pred HHHHHHHHHhcCCcceEEEEeccCCCC---CCCCCCcHHHHH---HHHHHHHhCCCeE---EEcCC---CCcccc
Q 043340 233 AVELAELLHEWGRGHHVNLIPFNPIEG---SDYQRPYKKAVL---AFAGALESHKITT---SIRQT---RGLDAS 295 (327)
Q Consensus 233 a~~L~~~l~~l~~~~~vnLIp~np~~~---~~~~~p~~e~i~---~f~~~L~~~gi~v---~vR~~---~G~di~ 295 (327)
..+-++++.+.+-.--.|-+||--.+- .....-.+|..+ +|-+.+-+.|+-+ .||+- +|+++-
T Consensus 338 vl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~ 412 (560)
T COG1031 338 VLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMW 412 (560)
T ss_pred HHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchh
Confidence 999999998765333446566542211 123334444443 5555555667754 46652 455543
No 152
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.77 E-value=1.8 Score=39.78 Aligned_cols=141 Identities=19% Similarity=0.167 Sum_probs=83.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc----CChhhHHHHHHHhhhcc-CCCCccE-EEEcCCcHHHHH
Q 043340 135 GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM----LNLKSVLEAHRCLNKDV-QIGQRMI-TISTVGVPNTIK 208 (327)
Q Consensus 135 ~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl----ln~~~v~~~i~~l~~~~-gi~~r~i-tisTnG~~~~i~ 208 (327)
.....++.++.++-+....+ .+++.|-+.+ |+|. .. +...+.++.+++.. +. ++ .+.+|| ...++
T Consensus 11 ~~~~~~s~e~~~~i~~~L~~---~GV~~IEvg~-~~~~~~~p~~-~~~~~~i~~l~~~~~~~---~~~~l~~~~-~~~i~ 81 (265)
T cd03174 11 SEGATFSTEDKLEIAEALDE---AGVDSIEVGS-GASPKAVPQM-EDDWEVLRAIRKLVPNV---KLQALVRNR-EKGIE 81 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHH---cCCCEEEecc-CcCccccccC-CCHHHHHHHHHhccCCc---EEEEEccCc-hhhHH
Confidence 34466788888776666554 3789999988 8886 32 23566777776432 33 55 677787 44677
Q ss_pred HHHhcCCCcceeecccCC---------CC---cHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHH
Q 043340 209 KLASYKLQSTLAIRSAGV---------ND---QVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA 276 (327)
Q Consensus 209 ~L~~~~~~v~lavSI~Gv---------ND---~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~ 276 (327)
++.+.+.+ .+.+++++- .+ ..+.+.+.++.+++.+....+++...... ..+.+.+.++.+.
T Consensus 82 ~a~~~g~~-~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------~~~~~~l~~~~~~ 154 (265)
T cd03174 82 RALEAGVD-EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------KTDPEYVLEVAKA 154 (265)
T ss_pred HHHhCCcC-EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------CCCHHHHHHHHHH
Confidence 77777643 455665443 11 23455556666666654445555432210 2456677777777
Q ss_pred HHhCCCe-EEEcCCCC
Q 043340 277 LESHKIT-TSIRQTRG 291 (327)
Q Consensus 277 L~~~gi~-v~vR~~~G 291 (327)
+.+.|.. +++-.+-|
T Consensus 155 ~~~~g~~~i~l~Dt~G 170 (265)
T cd03174 155 LEEAGADEISLKDTVG 170 (265)
T ss_pred HHHcCCCEEEechhcC
Confidence 7777764 34444433
No 153
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=92.71 E-value=9.1 Score=36.44 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=88.8
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcC--ChhhHHHHHHHhhhc-cCCCC
Q 043340 118 SQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PML--NLKSVLEAHRCLNKD-VQIGQ 193 (327)
Q Consensus 118 sq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Pll--n~~~v~~~i~~l~~~-~gi~~ 193 (327)
--.-|.-+|.||.-.+.. ...+.++|=......+.. -++++||+++.-- =|- -..+..+.++.+++. .+.
T Consensus 76 mG~~CTR~C~FC~V~~g~-P~~lD~~EP~rvAeaV~~---mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t-- 149 (306)
T COG0320 76 LGDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKD---MGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQT-- 149 (306)
T ss_pred ccchhccCCCccccCCCC-CCCCCCchHHHHHHHHHH---hCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCc--
Confidence 346699999999986544 556777665554444443 2789999998310 000 113456667776532 223
Q ss_pred ccEEEEc---CCcHHHHHHHHhcCCCcc---------e--eec----------------------------ccCCCCcHH
Q 043340 194 RMITIST---VGVPNTIKKLASYKLQST---------L--AIR----------------------------SAGVNDQVE 231 (327)
Q Consensus 194 r~itisT---nG~~~~i~~L~~~~~~v~---------l--avS----------------------------I~GvND~~e 231 (327)
.|.+-| .|....++.+++.++++. | .|. +=|.-++.+
T Consensus 150 -~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~ 228 (306)
T COG0320 150 -TIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDE 228 (306)
T ss_pred -eEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHH
Confidence 454444 344455677776643210 0 000 446667777
Q ss_pred HHHHHHHHHHhcCCcceEEEE-eccCCCCC--C-CCCCcHHHHHHHHHHHHhCCCe
Q 043340 232 HAVELAELLHEWGRGHHVNLI-PFNPIEGS--D-YQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 232 ~a~~L~~~l~~l~~~~~vnLI-p~np~~~~--~-~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
++.+..+=|+..+ +.+-.| .|-..... + -+--++++-+.|.++..+.|..
T Consensus 229 Ev~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 229 EVIEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred HHHHHHHHHHHcC--CCEEEeccccCCccccCCceeccCHHHHHHHHHHHHHccch
Confidence 7777776666654 333222 33322211 1 1234568888999999998874
No 154
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.60 E-value=6.5 Score=39.93 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=46.4
Q ss_pred EEEEcCCc---HHHHHHHHhcCCCcceeecc----------cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC
Q 043340 196 ITISTVGV---PNTIKKLASYKLQSTLAIRS----------AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY 262 (327)
Q Consensus 196 itisTnG~---~~~i~~L~~~~~~v~lavSI----------~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~ 262 (327)
||++|=-- ...++++...|.. .+.+-+ -+-+-+.+++.+-.++++..+...-++++|=-| +
T Consensus 187 itiETRPD~~~ee~ld~mlkyG~T-rVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLP--g--- 260 (515)
T COG1243 187 ITIETRPDYIDEEHLDQMLKYGVT-RVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLP--G--- 260 (515)
T ss_pred EEEecCccccCHHHHHHHHhcCCc-EEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCC--C---
Confidence 77888542 2357888877632 233221 112234667777788888876555667765332 1
Q ss_pred CCCcHHHHHHHHHHHHhC
Q 043340 263 QRPYKKAVLAFAGALESH 280 (327)
Q Consensus 263 ~~p~~e~i~~f~~~L~~~ 280 (327)
...+-+++.|.+++...
T Consensus 261 -s~~erDl~~f~~~f~~p 277 (515)
T COG1243 261 -SDFERDLESFREIFEDP 277 (515)
T ss_pred -CChHHHHHHHHHHHhCC
Confidence 22456788898888765
No 155
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=89.78 E-value=19 Score=34.43 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=41.8
Q ss_pred eeEEEEEe-cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC---CCCcCChhhHHHHHHHhh
Q 043340 111 RLTACVSS-QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM---GEPMLNLKSVLEAHRCLN 186 (327)
Q Consensus 111 r~tlcVss-q~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~---GEPlln~~~v~~~i~~l~ 186 (327)
+.|..|-. -.-|.-+|+||.-........+.+.|=..-...... + +++.||++-. -=|=.-.+++.+.++.++
T Consensus 109 ~ATATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIas-W--gl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK 185 (360)
T KOG2672|consen 109 TATATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIAS-W--GLDYIVLTSVDRDDLPDGGANHIAKTVQKIK 185 (360)
T ss_pred ceeEEEEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHH-c--CCCeEEEEecccccCcCcchHHHHHHHHHHH
Confidence 44444432 567999999999754333333333332222222222 2 6899999873 112233467888888886
Q ss_pred h
Q 043340 187 K 187 (327)
Q Consensus 187 ~ 187 (327)
.
T Consensus 186 ~ 186 (360)
T KOG2672|consen 186 E 186 (360)
T ss_pred h
Confidence 3
No 156
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=88.64 E-value=6.3 Score=38.02 Aligned_cols=66 Identities=17% Similarity=0.374 Sum_probs=41.3
Q ss_pred cCCCCCCCCCCCCCCC-CCC-CCCCHHHHHHHHHHHHHHhcCCcceEEEee--CCCCcCChhhHHHHHHHhh
Q 043340 119 QVGCPLRCSFCATGKG-GFS-RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG--MGEPMLNLKSVLEAHRCLN 186 (327)
Q Consensus 119 q~GCnl~C~fC~t~~~-~~~-r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G--~GEPlln~~~v~~~i~~l~ 186 (327)
+.-|=..|.||.|... ... -.+|++||++..+.+-+. .-+.++-++. +-.|=...+.++++++.++
T Consensus 61 TN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrR--nYIeGLFLSSGvi~~~DyTmE~mi~var~LR 130 (404)
T COG4277 61 TNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRR--NYIEGLFLSSGVIKNPDYTMEEMIEVARILR 130 (404)
T ss_pred hhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHH--hhhhhheeccccccCcchHHHHHHHHHHHHh
Confidence 5789999999999432 223 369999999987765432 1244444433 1234444456666777665
No 157
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=86.44 E-value=3.2 Score=38.98 Aligned_cols=86 Identities=22% Similarity=0.453 Sum_probs=53.0
Q ss_pred cCCCCCCCCCCCCCC---CCC--CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc-------CChhhHHHHHHHhh
Q 043340 119 QVGCPLRCSFCATGK---GGF--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM-------LNLKSVLEAHRCLN 186 (327)
Q Consensus 119 q~GCnl~C~fC~t~~---~~~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl-------ln~~~v~~~i~~l~ 186 (327)
+.||.-.|+||+... .|. .+-+..+|++++...+.+. + .-.|. ||-.. -++..+.+.++.++
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~---G--STRFC-mGaAWRD~~GRk~~fk~IlE~ikevr 164 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN---G--STRFC-MGAAWRDMKGRKSAFKRILEMIKEVR 164 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhc---C--Cceee-cchhhhhhccchhHHHHHHHHHHHHH
Confidence 589999999998642 233 3568888888887776541 1 11121 23322 13355666666664
Q ss_pred hccCCCCccEEEEcCCcHH--HHHHHHhcCC
Q 043340 187 KDVQIGQRMITISTVGVPN--TIKKLASYKL 215 (327)
Q Consensus 187 ~~~gi~~r~itisTnG~~~--~i~~L~~~~~ 215 (327)
.+|+ .+++ |-|.++ ..++|.+.|+
T Consensus 165 -~Mgm---EvCv-TLGMv~~qQAkeLKdAGL 190 (380)
T KOG2900|consen 165 -DMGM---EVCV-TLGMVDQQQAKELKDAGL 190 (380)
T ss_pred -cCCc---eeee-eeccccHHHHHHHHhccc
Confidence 5677 6666 667654 4777777764
No 158
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=82.84 E-value=22 Score=35.54 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=29.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHH
Q 043340 113 TACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIE 153 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~ 153 (327)
.--+++..||--.|.||.+.+. +.-...+.+++++.+...-
T Consensus 188 ieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f 229 (547)
T KOG4355|consen 188 IEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSF 229 (547)
T ss_pred eEEEEeccccccccccccccccccccccCCHHHHHHHHHHHH
Confidence 3346667899999999999643 3445677888888776543
No 159
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=80.48 E-value=34 Score=32.78 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=34.8
Q ss_pred HHHHHhcCCC-cceeec-ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC
Q 043340 207 IKKLASYKLQ-STLAIR-SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS 260 (327)
Q Consensus 207 i~~L~~~~~~-v~lavS-I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~ 260 (327)
++.+.+.+.. +.+.+- ++|.|+ +++.+++++++.++ ..+.+|.|.|.+..
T Consensus 145 i~~l~~~G~~~v~in~vv~~g~n~--~ei~~l~~~~~~~g--v~~~~ie~mp~~~~ 196 (334)
T TIGR02666 145 IDAALAAGLEPVKLNTVVMRGVND--DEIVDLAEFAKERG--VTLRFIELMPLGEG 196 (334)
T ss_pred HHHHHHcCCCcEEEEEEEeCCCCH--HHHHHHHHHHHhcC--CeEEEEeccCCCCC
Confidence 5555565553 333322 588887 46999999999876 57888889887643
No 160
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=75.49 E-value=71 Score=29.85 Aligned_cols=129 Identities=17% Similarity=0.252 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC---CcCCh-------hhHHHHHHHhhhccCCCCccEEEEcCCcHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE---PMLNL-------KSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE---Plln~-------~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i 207 (327)
+.++.+++++++....+ .+.+-|-+ | || |-... +.+..+++.+++..++ .+.|.|.= ...+
T Consensus 19 ~~~~~~~~~~~a~~~~~---~GAdiIDI-G-~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~---plSIDT~~-~~v~ 89 (257)
T cd00739 19 RFLSLDKAVAHAEKMIA---EGADIIDI-G-GESTRPGADPVSVEEELERVIPVLEALRGELDV---LISVDTFR-AEVA 89 (257)
T ss_pred CCCCHHHHHHHHHHHHH---CCCCEEEE-C-CCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---cEEEeCCC-HHHH
Confidence 55788999988877654 35555555 4 33 32221 2455667777654566 68898852 2345
Q ss_pred HHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-----CCCCCcHHHHHHHH---HHHHh
Q 043340 208 KKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-----DYQRPYKKAVLAFA---GALES 279 (327)
Q Consensus 208 ~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-----~~~~p~~e~i~~f~---~~L~~ 279 (327)
++-++.+ +.+--|+.|.+++ .++.++++..+ +.+-+++.+..+.. .|..+..+.+..|. +.+.+
T Consensus 90 e~al~~G--~~iINdisg~~~~----~~~~~l~~~~~--~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (257)
T cd00739 90 RAALEAG--ADIINDVSGGSDD----PAMLEVAAEYG--APLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAES 161 (257)
T ss_pred HHHHHhC--CCEEEeCCCCCCC----hHHHHHHHHcC--CCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 5555554 5677778887754 34556666654 45555554322221 12333344544444 45677
Q ss_pred CCCe
Q 043340 280 HKIT 283 (327)
Q Consensus 280 ~gi~ 283 (327)
+|+.
T Consensus 162 ~Gi~ 165 (257)
T cd00739 162 AGVA 165 (257)
T ss_pred cCCC
Confidence 8884
No 161
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=72.93 E-value=84 Score=29.52 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~ 187 (327)
..+..+.+.+.+....+ .++++|++.|. || |.+..++-.++++.+.+
T Consensus 15 g~iD~~~~~~li~~l~~---~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~ 63 (279)
T cd00953 15 NKIDKEKFKKHCENLIS---KGIDYVFVAGTTGLGPSLSFQEKLELLKAYSD 63 (279)
T ss_pred CCcCHHHHHHHHHHHHH---cCCcEEEEcccCCCcccCCHHHHHHHHHHHHH
Confidence 35666667666665543 58999999994 99 88888877777777654
No 162
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=70.45 E-value=48 Score=32.28 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=37.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC---CCCCCcHHHH---HHHHHHHHhCCCe---EEEcCCCCcccc
Q 043340 226 VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS---DYQRPYKKAV---LAFAGALESHKIT---TSIRQTRGLDAS 295 (327)
Q Consensus 226 vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~---~~~~p~~e~i---~~f~~~L~~~gi~---v~vR~~~G~di~ 295 (327)
.-.+++++-+........+ ..++|..|.|..+. +..+++.+.- +.+. .|-.+|.. ...-.+.|+-|+
T Consensus 197 lGesD~~~ve~~~~v~~~g--~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q~a~-yli~~G~v~~~~~~fde~g~lI~ 272 (339)
T COG2516 197 LGESDKDIVETIKRVRKRG--GIVSLFAFTPLKGTQMENRKPPPVERYRKIQVAR-YLIGNGEVDLEDFEFDEFGNLID 272 (339)
T ss_pred cCCchHHHHHHHHHHHhcC--ceEEEEEecccccccccCCCCCcHHHHHHHHHHH-HHHhcCccchhhcccccccceec
Confidence 4445555555555555544 68999999997665 3455665543 3333 56666642 223345555444
No 163
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=67.80 E-value=1.1e+02 Score=28.82 Aligned_cols=120 Identities=16% Similarity=0.249 Sum_probs=61.0
Q ss_pred cCCcceEEEeeCCCCcCC-------hhhHHHHHHHhhhccC-CCCc-cEEEEcCCc-------HHHHHHHHhcCCCccee
Q 043340 157 KHRVTNVVFMGMGEPMLN-------LKSVLEAHRCLNKDVQ-IGQR-MITISTVGV-------PNTIKKLASYKLQSTLA 220 (327)
Q Consensus 157 ~~~v~~Ivf~G~GEPlln-------~~~v~~~i~~l~~~~g-i~~r-~itisTnG~-------~~~i~~L~~~~~~v~la 220 (327)
......|++ |.||+. .+...++++.+.+.+. .... -+.+---|. ...++......-..++-
T Consensus 99 ~~~F~~i~~---g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~ 175 (262)
T PF06180_consen 99 KHDFKKIVL---GRPLLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVF 175 (262)
T ss_dssp CCCSSEEEE---E--SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEE
T ss_pred hccCCeEEe---cccccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEE
Confidence 345677766 779998 5667777777754332 1111 222322333 23455444442113344
Q ss_pred ec-ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 221 IR-SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS----DYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 221 vS-I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~----~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
|. +.|.-+ ++.+.+.++..+ ..+|.|+||.-+.|. +.....+ ...+..|++.|+.|++.
T Consensus 176 vgtvEG~P~----~~~vi~~L~~~g-~k~V~L~PlMlVAGdHa~nDmaGde~---dSWks~L~~~G~~v~~~ 239 (262)
T PF06180_consen 176 VGTVEGYPS----LEDVIARLKKKG-IKKVHLIPLMLVAGDHAKNDMAGDEE---DSWKSRLEAAGFEVTCV 239 (262)
T ss_dssp EEETTSSSB----HHHHHHHHHHHT--SEEEEEEESSS--HHHHCCCCSSST---TSHHHHHHHTT-EEEE-
T ss_pred EEEeCCCCC----HHHHHHHHHhcC-CCeEEEEecccccchhhhhhhcCCCc---chHHHHHHHCCCEEEEE
Confidence 43 677543 344445555433 358999999987653 2332222 36788999999998763
No 164
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=67.69 E-value=6.2 Score=24.79 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=13.3
Q ss_pred cEEEEcCCcHHHHHHHHh
Q 043340 195 MITISTVGVPNTIKKLAS 212 (327)
Q Consensus 195 ~itisTnG~~~~i~~L~~ 212 (327)
.|.|||||-.|.+.+++.
T Consensus 6 qI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 6 QIAISTNGKSPRLARLIR 23 (30)
T ss_dssp EEEEEESSS-HHHHHHHH
T ss_pred EEEEECCCCChHHHHHHH
Confidence 799999999887655543
No 165
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=66.15 E-value=81 Score=31.12 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=40.9
Q ss_pred CcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHh-cCCCcceeeccc-CCC---------
Q 043340 159 RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLAS-YKLQSTLAIRSA-GVN--------- 227 (327)
Q Consensus 159 ~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~-~~~~v~lavSI~-GvN--------- 227 (327)
++..|.+.+ |....+.+..+++...+..++ .++|++-.-...+.+++. .+..+.+.+.|+ |+|
T Consensus 77 G~~~ILl~~---p~~~~~~l~~~~~~~~~~~~i---~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R~G~~~G~~ 150 (388)
T cd06813 77 GFDDILVAY---PSVDRAALRELAADPKLGATI---TLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFGGLHFGVR 150 (388)
T ss_pred CCCeEEEeC---CCCCHHHHHHHHhhhccCCeE---EEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCccccccccCcC
Confidence 446677544 665555566666544322233 455655444455555554 232333333332 322
Q ss_pred ----CcHHHHHHHHHHHHhcC
Q 043340 228 ----DQVEHAVELAELLHEWG 244 (327)
Q Consensus 228 ----D~~e~a~~L~~~l~~l~ 244 (327)
.+++++.++++.+...+
T Consensus 151 Rs~~~~~~~~~~l~~~i~~~~ 171 (388)
T cd06813 151 RSPLHTPAQALALAKAIAARP 171 (388)
T ss_pred CCCCCCHHHHHHHHHHHhcCC
Confidence 23567888888776643
No 166
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=64.85 E-value=50 Score=31.17 Aligned_cols=134 Identities=17% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEe-e-CCCCcCChhhHHHHHHHhhhc-cCCCCccEEEEcCCcH---H--HHHHH
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFM-G-MGEPMLNLKSVLEAHRCLNKD-VQIGQRMITISTVGVP---N--TIKKL 210 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~-G-~GEPlln~~~v~~~i~~l~~~-~gi~~r~itisTnG~~---~--~i~~L 210 (327)
.+|++||+++.....+. +..+-++..= - -|.|.+.++...++++.+++. -++ -+.++|.|.. + .+.-+
T Consensus 22 P~tpeEia~~A~~c~~A-GAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~---iv~~Ttg~~~~~~~~~R~~~v 97 (272)
T PF05853_consen 22 PITPEEIAADAVACYEA-GAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDL---IVQPTTGGGGGPDPEERLAHV 97 (272)
T ss_dssp --SHHHHHHHHHHHHHH-TESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTS---EEEEESSTTTTSGHHHHCTHH
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCe---EEEeCCCCCCCCCHHHHHHHH
Confidence 48899999999876553 4445555554 1 389999999999999999875 566 7888898731 1 22222
Q ss_pred HhcCCCcceeecccC---------CCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC-----------------------
Q 043340 211 ASYKLQSTLAIRSAG---------VNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE----------------------- 258 (327)
Q Consensus 211 ~~~~~~v~lavSI~G---------vND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~----------------------- 258 (327)
....++ ...+.+.- +..+++.+.++++.+++.+ .+..+.=|++..
T Consensus 98 ~~~~pd-~asl~~gs~n~~~~~~~~~n~~~~~~~~~~~~~e~G--i~pe~ev~d~~~l~~~~~l~~~G~l~~p~~~~~vl 174 (272)
T PF05853_consen 98 EAWKPD-MASLNPGSMNFGTRDRVYINTPADARELARRMRERG--IKPEIEVFDPGHLRNARRLIEKGLLPGPLLVNFVL 174 (272)
T ss_dssp HHH--S-EEEEE-S-EEESGGCSEE---HHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHTTSS-SSEEEEEEE
T ss_pred HhcCCC-eEEecccccccccCCceecCCHHHHHHHHHHHHHcC--CeEEEEEEcHHHHHHHHHHHHCCCCCCCeEEEEcc
Confidence 111111 12222111 1234778888888887755 455555455310
Q ss_pred C-CCCCCCcHHHHHHHHHHHHh
Q 043340 259 G-SDYQRPYKKAVLAFAGALES 279 (327)
Q Consensus 259 ~-~~~~~p~~e~i~~f~~~L~~ 279 (327)
+ ..-.+++++.+..+.+.+..
T Consensus 175 G~~~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 175 GVPGGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp S-TTS--S-HHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHhcCC
Confidence 0 01135677777777777766
No 167
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=62.98 E-value=1.4e+02 Score=28.36 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
..+..+.+.+.+....+ .++++|+..| .|| +.+..++=.++++.+.+
T Consensus 23 g~iD~~~l~~li~~l~~---~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~ 71 (303)
T PRK03620 23 GSFDEAAYREHLEWLAP---YGAAALFAAGGTGEFFSLTPDEYSQVVRAAVE 71 (303)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 35777777776666554 5899999988 588 55566666666665543
No 168
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=62.33 E-value=59 Score=32.00 Aligned_cols=106 Identities=14% Similarity=0.074 Sum_probs=54.5
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcH----HHH----HHHHhc-CCCcceeecccCCCC-cH-----HHHHHHHHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVP----NTI----KKLASY-KLQSTLAIRSAGVND-QV-----EHAVELAELL 240 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i----~~L~~~-~~~v~lavSI~GvND-~~-----e~a~~L~~~l 240 (327)
+.+.++++.+.+.+ .++-|.|.|..+. +.+ +++.+. +. .-+.++.+|+.. +. .-.+.+++.+
T Consensus 73 ~~L~~~i~~~~~~~--~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~-~vi~v~t~gf~g~~~~~G~~~a~~al~~~l 149 (406)
T cd01967 73 KKLKKAIKEAYERF--PPKAIFVYSTCPTGLIGDDIEAVAKEASKELGI-PVIPVNCEGFRGVSQSLGHHIANDAILDHL 149 (406)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCCchhhhccCHHHHHHHHHHhhCC-CEEEEeCCCeeCCcccHHHHHHHHHHHHHh
Confidence 45666666554332 2234666555432 122 333322 22 235667777655 22 1233455544
Q ss_pred Hhc-----CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcc
Q 043340 241 HEW-----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293 (327)
Q Consensus 241 ~~l-----~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~d 293 (327)
..- .....||||..... ..++.++.+.|++.|+.+...-..|.+
T Consensus 150 ~~~~~~~~~~~~~VNiig~~~~---------~~d~~el~~lL~~~Gi~~~~~~~~~~~ 198 (406)
T cd01967 150 VGTKEPEEKTPYDVNIIGEYNI---------GGDAWVIKPLLEELGIRVNATFTGDGT 198 (406)
T ss_pred cCCCCcCCCCCCeEEEEecccc---------chhHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 321 11346899874321 126788888899999998755444433
No 169
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=61.04 E-value=1.6e+02 Score=29.36 Aligned_cols=109 Identities=9% Similarity=0.077 Sum_probs=57.5
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcHH----HH----HHHHhcCCCcceeecccCCCCcHH-----HHHHHHHHHHh
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPN----TI----KKLASYKLQSTLAIRSAGVNDQVE-----HAVELAELLHE 242 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i----~~L~~~~~~v~lavSI~GvND~~e-----~a~~L~~~l~~ 242 (327)
+.+.++++.+.+.+. ++-|.|.|..+.. .+ +++-+.+.+ -+.|+.+|+..+.. -.+.+++.+..
T Consensus 72 ~kL~~~I~~~~~~~~--p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~-vi~v~t~gf~g~~~~G~~~a~~al~~~~~~ 148 (427)
T cd01971 72 DRLRELIKSTLSIID--ADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAP-IVYLETGGFKGNNYAGHEIVLKAIIDQYVG 148 (427)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCC-EEEEECCCcCcccccHHHHHHHHHHHHhcc
Confidence 567777776654332 3457666655431 23 333122222 36677777764321 13344443322
Q ss_pred c---CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCC
Q 043340 243 W---GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRG 291 (327)
Q Consensus 243 l---~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G 291 (327)
- .....||||...|.... + ...+++++++.|++.|+.+...-..+
T Consensus 149 ~~~~~~~~~VNiiG~~~~~~~-~---~~~d~~elk~lL~~~Gl~v~~~~~~~ 196 (427)
T cd01971 149 QSEEKEPGLVNLWGPVPYQDP-F---WRGDLEEIKRVLEGIGLKVNILFGPE 196 (427)
T ss_pred CCCCCCCCeEEEEeccCCccc-c---ccccHHHHHHHHHHCCCeEEEEECCC
Confidence 1 11346999964332111 1 12467888899999999986654433
No 170
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=60.94 E-value=1.1e+02 Score=30.62 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcHH----HHH----HHHhc-----CCCcceeecccCCCCcHHH-----HHHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPN----TIK----KLASY-----KLQSTLAIRSAGVNDQVEH-----AVELA 237 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i~----~L~~~-----~~~v~lavSI~GvND~~e~-----a~~L~ 237 (327)
+.+.++++.+.+.+. ++-|.|.|..+.. .++ ++.+. +. .-+.++.||+..+... .+.|+
T Consensus 71 ~~L~~ai~~~~~~~~--p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~-~vi~v~tpgf~gs~~~G~~~a~~al~ 147 (435)
T cd01974 71 NNLIDGLKNAYAVYK--PDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADF-PVPFANTPSFVGSHITGYDNMVKGIL 147 (435)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCC-eEEEecCCCCccCHHHHHHHHHHHHH
Confidence 567778877755433 3356766665532 233 33222 11 2356667777655433 33444
Q ss_pred HHHHhc----CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 238 ELLHEW----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 238 ~~l~~l----~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
+.+..- .....||||+. +..+ .+.+.++.+.|++.|+.+.+
T Consensus 148 ~~l~~~~~~~~~~~~VNli~~-------~~~~-~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 148 THLTEGSGGAGKNGKLNIIPG-------FDTY-AGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred HHHhcccCCCCCCCeEEEECC-------CCCC-cchHHHHHHHHHHcCCCEEE
Confidence 433221 11346999962 1122 22688999999999999864
No 171
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=60.25 E-value=1.5e+02 Score=27.69 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc---CC---h----hhHHHHHHHhhhccCCCCccEEEEcCCcHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM---LN---L----KSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl---ln---~----~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i 207 (327)
+.++++++++++....+ .+.+.|-+ | |+.. .. . +.+..+++.+++..++ .++++|.-. ..+
T Consensus 18 ~~~~~~~~~~~a~~~~~---~GA~iIDI-G-~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~---plsiDT~~~-~vi 88 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLE---EGADIIDV-G-GESTRPGADRVSPEEELNRVVPVIKALRDQPDV---PISVDTYRA-EVA 88 (257)
T ss_pred CCCCHHHHHHHHHHHHH---CCCCEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---eEEEeCCCH-HHH
Confidence 45788999988877654 45666666 5 4433 21 1 1377777777654577 799998643 235
Q ss_pred HHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-----CCCCCcHHHHHHHHHH---HHh
Q 043340 208 KKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-----DYQRPYKKAVLAFAGA---LES 279 (327)
Q Consensus 208 ~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-----~~~~p~~e~i~~f~~~---L~~ 279 (327)
+.-++.| +.+--|+.|.+| .++.+++++.+ +.+-+++.+..+.. .|..+.++.+..|.+. +.+
T Consensus 89 ~~al~~G--~~iINsis~~~~-----~~~~~l~~~~~--~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (257)
T TIGR01496 89 RAALEAG--ADIINDVSGGQD-----PAMLEVAAEYG--VPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVA 159 (257)
T ss_pred HHHHHcC--CCEEEECCCCCC-----chhHHHHHHcC--CcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 5555554 556677777763 24455566654 45555654422221 2333334455444444 577
Q ss_pred CCCe
Q 043340 280 HKIT 283 (327)
Q Consensus 280 ~gi~ 283 (327)
.|+.
T Consensus 160 ~Gi~ 163 (257)
T TIGR01496 160 AGVA 163 (257)
T ss_pred cCCC
Confidence 8884
No 172
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=59.87 E-value=1.6e+02 Score=27.82 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
..+..+.+.+.+..... ..++++|.+.| +|| +.+..++-.++++...+
T Consensus 19 g~iD~~~~~~li~~l~~--~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~ 68 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIE--KQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAE 68 (293)
T ss_pred CCcCHHHHHHHHHHHHh--cCCCCEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 34666666555554432 15899999988 599 88887777777776654
No 173
>PLN02417 dihydrodipicolinate synthase
Probab=58.68 E-value=1.6e+02 Score=27.62 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~ 187 (327)
..+..+.+.+.+....+ .++++|++.|. || +.++.++-.++++...+
T Consensus 17 g~iD~~~~~~~i~~l~~---~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~ 65 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIE---NGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVN 65 (280)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECccCcchhhCCHHHHHHHHHHHHH
Confidence 34666666666655543 58999999884 88 56676666666666543
No 174
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=58.45 E-value=1.2e+02 Score=30.25 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=58.9
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcH----HH----HHHHHhc-CCCcceeecccCCCC-cH-----HHHHHHHHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVP----NT----IKKLASY-KLQSTLAIRSAGVND-QV-----EHAVELAELL 240 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~----i~~L~~~-~~~v~lavSI~GvND-~~-----e~a~~L~~~l 240 (327)
+.+.++++.+.+.+. ++-|.|-|..+. +. ++++.+. +.+ -+.++.+|+.. +. ...+.+++.+
T Consensus 75 ~kL~~aI~~~~~~~~--P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~p-vi~v~t~gf~g~~~~~G~~~a~~al~~~~ 151 (426)
T cd01972 75 KKLEDTIKEAYSRYK--PKAIFVATSCATGIIGDDVESVVEELEDEIGIP-VVALHCEGFKGKHWRSGFDAAFHGILRHL 151 (426)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEECCChHHHhccCHHHHHHHHHHhhCCC-EEEEeCCccCCccHhHHHHHHHHHHHHHh
Confidence 456667776654332 334666554432 12 2333322 222 35677777755 32 1234444444
Q ss_pred Hhc----CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCccc
Q 043340 241 HEW----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294 (327)
Q Consensus 241 ~~l----~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di 294 (327)
..- .....||||...+.+... ...++.++.+.|++.|+.+...-+.|..+
T Consensus 152 ~~~~~~~~~~~~VNliG~~~~~~~~----~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~ 205 (426)
T cd01972 152 VPPQDPTKQEDSVNIIGLWGGPERT----EQEDVDEFKRLLNELGLRVNAIIAGGCSV 205 (426)
T ss_pred cCCCCCCCCCCCEEEEccCCCcccc----ccccHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 221 012359999755432111 13578889999999999987665544443
No 175
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=56.76 E-value=1.6e+02 Score=30.43 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=57.5
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcHH----HH----HHHHhcC-C--C-cceeecccCCCCcHHH-----HHHHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPN----TI----KKLASYK-L--Q-STLAIRSAGVNDQVEH-----AVELAE 238 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i----~~L~~~~-~--~-v~lavSI~GvND~~e~-----a~~L~~ 238 (327)
+++.+.|+.+.+.+ .++-|.|.|..... .+ ++..+.+ . + .-+.++-||+..+... ++.+.+
T Consensus 128 ~~L~e~I~~~~~~y--~P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd~a~~ail~ 205 (515)
T TIGR01286 128 KNMVDGLQNCYALY--KPKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHITGYDNMFKGILE 205 (515)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHHHHHHHHHHHHH
Confidence 56778887775433 23468887776532 23 3332221 1 1 1245667777666332 344444
Q ss_pred HHHhc-------CCcceEEEEe-ccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 239 LLHEW-------GRGHHVNLIP-FNPIEGSDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 239 ~l~~l-------~~~~~vnLIp-~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
.+..- .....||||| |+.. ...+.++.++|...|+.+.+
T Consensus 206 ~l~~~~~~~~~~~~~~~VNii~g~~~~---------~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 206 YFTKGSMDDKVVGSNGKINIIPGFETY---------IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHhhcccccccCCCCCeEEEECCCCCC---------chhHHHHHHHHHHcCCCeEE
Confidence 44321 1135699997 3211 35788999999999999875
No 176
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=56.54 E-value=2.1e+02 Score=28.17 Aligned_cols=111 Identities=13% Similarity=0.230 Sum_probs=61.2
Q ss_pred EEEecCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcc--eEEEeeCCCCcCChhhH-----HHHHH
Q 043340 115 CVSSQVGCP----LRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVT--NVVFMGMGEPMLNLKSV-----LEAHR 183 (327)
Q Consensus 115 cVssq~GCn----l~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~--~Ivf~G~GEPlln~~~v-----~~~i~ 183 (327)
.+-.+.||- .+|.+|.....+-...++.++++.|+......+....+ .|-+.-.|- +++...| ..+++
T Consensus 50 vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGS-FLD~~EVP~e~R~~Il~ 128 (358)
T COG1244 50 VILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGS-FLDPEEVPREARRYILE 128 (358)
T ss_pred EEEecCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccc-cCChhhCCHHHHHHHHH
Confidence 333457886 34899987665457889999999999987765532221 243333275 4454443 23333
Q ss_pred HhhhccCCCCccEEEEcCC-c--HHHHHHHHhc--CCCcceeecccCCCC
Q 043340 184 CLNKDVQIGQRMITISTVG-V--PNTIKKLASY--KLQSTLAIRSAGVND 228 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTnG-~--~~~i~~L~~~--~~~v~lavSI~GvND 228 (327)
.+.+.-++ .++.++|=- + .+.+.++.+. +..+.++|-|.-.||
T Consensus 129 ~is~~~~v--~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD 176 (358)
T COG1244 129 RISENDNV--KEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETAND 176 (358)
T ss_pred HHhhccce--eEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcH
Confidence 44322123 367777643 2 2346666654 334555555444443
No 177
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=55.99 E-value=1.7e+02 Score=27.08 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC-C---------hhhHHHHHHHhhhccCCCCccEEEEcCCcHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML-N---------LKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll-n---------~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i 207 (327)
+..+.+++++++....+ .+.+-|-+ | ||+.- + .+.+..+++.+++..++ .+.|.|.= ...+
T Consensus 19 ~~~~~~~~~~~a~~~~~---~GAdiIDv-G-~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~---piSIDT~~-~~v~ 89 (258)
T cd00423 19 KFLSLDKALEHARRMVE---EGADIIDI-G-GESTRPGAEPVSVEEELERVIPVLRALAGEPDV---PISVDTFN-AEVA 89 (258)
T ss_pred ccCCHHHHHHHHHHHHH---CCCCEEEE-C-CCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC---eEEEeCCc-HHHH
Confidence 45788899988877654 34444444 6 66651 1 13467777777654566 68888842 2235
Q ss_pred HHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC-----CCCCCCcHHHHHH---HHHHHHh
Q 043340 208 KKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG-----SDYQRPYKKAVLA---FAGALES 279 (327)
Q Consensus 208 ~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~-----~~~~~p~~e~i~~---f~~~L~~ 279 (327)
+.-++.+ ..+--|+.|.+++ .++.+++++.+ +.+-+++.+..+. ..|..+..+.++. ..+.+.+
T Consensus 90 ~aaL~~g--~~iINdis~~~~~----~~~~~l~~~~~--~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 161 (258)
T cd00423 90 EAALKAG--ADIINDVSGGRGD----PEMAPLAAEYG--APVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATE 161 (258)
T ss_pred HHHHHhC--CCEEEeCCCCCCC----hHHHHHHHHcC--CCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5555554 5577778887754 34566666654 5666666543222 1233333444443 3444567
Q ss_pred CCCeE
Q 043340 280 HKITT 284 (327)
Q Consensus 280 ~gi~v 284 (327)
.|+..
T Consensus 162 ~Gi~~ 166 (258)
T cd00423 162 AGIPP 166 (258)
T ss_pred cCCCH
Confidence 88753
No 178
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=55.06 E-value=1.2e+02 Score=27.72 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=78.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhc-CCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhc
Q 043340 135 GFSRNLSSHEIVGQVLAIEEIFK-HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY 213 (327)
Q Consensus 135 ~~~r~lt~~EIv~qv~~~~~~~~-~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~ 213 (327)
......+.+.+.+++....+.++ ..++-+.+-+...+....+.+.+.++.+++. |. -+++.+++-. ...++.+...
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~-G~-ir~iGvs~~~-~~~l~~~~~~ 150 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKE-GK-IRHIGVSNFS-PEQLEAALKI 150 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHT-TS-EEEEEEES---HHHHHHHHTC
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccc-cc-cccccccccc-cccccccccc
Confidence 34567888999999998887775 3456666655444444245677777777643 55 4678888766 5566666333
Q ss_pred CCCcceeec---ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC----CCCC----c-------HHHHHHHHH
Q 043340 214 KLQSTLAIR---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD----YQRP----Y-------KKAVLAFAG 275 (327)
Q Consensus 214 ~~~v~lavS---I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~----~~~p----~-------~e~i~~f~~ 275 (327)
+ .+.+.+. +.=+ ....-..+.++++.. .+.++.|.|..+.. +..+ + .+....+.+
T Consensus 151 ~-~~~~~~~q~~~n~~--~~~~~~~l~~~~~~~----gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 223 (283)
T PF00248_consen 151 G-SIPPDVVQINYNLL--NRREEEGLLEFCREH----GIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRE 223 (283)
T ss_dssp T-SS-ESEEEEE-BTT--BHBGGHHHHHHHHHT----T-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHH
T ss_pred c-cccccccccccccc--ccccccccccccccc----ccccccccccccCccccccccCCCcccccccchhhhhhhhhhh
Confidence 2 1122211 1111 123345677777773 56778888875421 1111 1 155666666
Q ss_pred HHHhCCCe
Q 043340 276 ALESHKIT 283 (327)
Q Consensus 276 ~L~~~gi~ 283 (327)
+..++|.+
T Consensus 224 ~a~~~g~s 231 (283)
T PF00248_consen 224 LAEEHGVS 231 (283)
T ss_dssp HHHHHTSS
T ss_pred hhhhcccc
Confidence 66666654
No 179
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=54.47 E-value=2e+02 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+..... .++++|++.| .|| |.+..++-.++++...+
T Consensus 25 ~iD~~~l~~lv~~li~---~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~ 72 (309)
T cd00952 25 TVDLDETARLVERLIA---AGVDGILTMGTFGECATLTWEEKQAFVATVVE 72 (309)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECcccccchhCCHHHHHHHHHHHHH
Confidence 4666666666665543 5899999988 488 55666666666666554
No 180
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=54.27 E-value=2e+02 Score=27.23 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+...+....+ .++++|+..| .|| |.+..++-.++++...+
T Consensus 22 ~iD~~~l~~li~~l~~---~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~ 69 (296)
T TIGR03249 22 SFDEAAYRENIEWLLG---YGLEALFAAGGTGEFFSLTPAEYEQVVEIAVS 69 (296)
T ss_pred CcCHHHHHHHHHHHHh---cCCCEEEECCCCcCcccCCHHHHHHHHHHHHH
Confidence 4666666666655543 5899999887 377 66676666666665543
No 181
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=54.27 E-value=1.2e+02 Score=28.84 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCC
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEP 171 (327)
++.+..+|.+.+..+.+ .++++|+..+ |+|
T Consensus 87 ~d~n~~~i~~~l~~~~~---~Gi~~ilaLr-GDp 116 (291)
T COG0685 87 RDRNRIEIISILKGAAA---LGIRNILALR-GDP 116 (291)
T ss_pred cCCCHHHHHHHHHHHHH---hCCceEEEec-CCC
Confidence 66788889888887765 4899999999 999
No 182
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=53.04 E-value=2.1e+02 Score=27.27 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhc
Q 043340 140 LSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKD 188 (327)
Q Consensus 140 lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~ 188 (327)
++.+.+.+.+....+ .++++|++.|. || |++..++=.++++...+.
T Consensus 22 vD~~a~~~lv~~li~---~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~ 69 (299)
T COG0329 22 VDEEALRRLVEFLIA---AGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA 69 (299)
T ss_pred cCHHHHHHHHHHHHH---cCCCEEEECCCCccchhcCHHHHHHHHHHHHHH
Confidence 665555555544443 57999999984 77 777877777777777653
No 183
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=52.44 E-value=45 Score=35.44 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCCC---------CCCC----CcHHHHHHHHHHHHhCCCeEEE---cCCCCc
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEGS---------DYQR----PYKKAVLAFAGALESHKITTSI---RQTRGL 292 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~---------~~~~----p~~e~i~~f~~~L~~~gi~v~v---R~~~G~ 292 (327)
..|-+.++...++.++ ..+|.|+|....++. .|.+ =+++.+++|.+.+.++||.|.+ -..-|.
T Consensus 163 ~~e~a~~llpYl~elG-~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 163 YFELAIELLPYLKELG-ITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred HHHHHHHHhHHHHHhC-CCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence 4678889999999998 589999999877642 1222 2369999999999999999964 334444
Q ss_pred ccccccchhhhh
Q 043340 293 DASAACGQLRNE 304 (327)
Q Consensus 293 di~aaCGqL~~~ 304 (327)
-.-+|.+....
T Consensus 242 -d~~~L~~fdg~ 252 (628)
T COG0296 242 -DGNYLARFDGT 252 (628)
T ss_pred -CcchhhhcCCc
Confidence 34567766544
No 184
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=52.21 E-value=2e+02 Score=26.85 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|++.| +|| +.+..++=.++++.+.+
T Consensus 15 ~iD~~~~~~~i~~l~~---~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~ 62 (285)
T TIGR00674 15 SVDFAALEKLIDFQIE---NGTDAIVVVGTTGESPTLSHEEHKKVIEFVVD 62 (285)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECccCcccccCCHHHHHHHHHHHHH
Confidence 4666666666665543 5899999987 477 56666666666665543
No 185
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=51.73 E-value=2.5e+02 Score=27.66 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHHh-cCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-----H---HHHHH
Q 043340 140 LSSHEIVGQVLAIEEIF-KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-----N---TIKKL 210 (327)
Q Consensus 140 lt~~EIv~qv~~~~~~~-~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-----~---~i~~L 210 (327)
.+++-+++..+...+.+ ..+..+|+++= ---+.....++-+.+.+...+ +-|+.|+-.|.. . .+-.|
T Consensus 144 ~t~eamveSAl~~v~~le~~~F~diviS~---KsSdv~~~i~ayr~la~~~dy-PLHlGVTEAG~~~~G~IKSaigig~L 219 (346)
T TIGR00612 144 ATAEAMVQSALEEAAILEKLGFRNVVLSM---KASDVAETVAAYRLLAERSDY-PLHLGVTEAGMGVKGIVKSSAGIGIL 219 (346)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHHHHHhhCCC-CceeccccCCCCCCchhHHHHHHHHH
Confidence 57777777776655543 23567777765 233444455666666554443 238888877752 2 47788
Q ss_pred HhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCc-ceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC--CCeEE--
Q 043340 211 ASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRG-HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH--KITTS-- 285 (327)
Q Consensus 211 ~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~-~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~--gi~v~-- 285 (327)
+.+|++.++.||+.+ |-.+++.--.++|+.++.. ..+++|.--.=+.. .---.+.+++..+.|... .+.+-
T Consensus 220 L~~GIGDTIRVSLT~--dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~--~~dl~~~~~~ve~~l~~~~~~l~VAVM 295 (346)
T TIGR00612 220 LARGIGDTIRVSLTD--DPTHEVPVAFEILQSLGLRARGVEIVACPSCGRT--GFDVEKVVRRVQEALFHLKTPLKVAVM 295 (346)
T ss_pred HhhCCCCeEEEECCC--CcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCc--CCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 899999999999877 4456666666777777632 23566532111111 111234455666666643 23332
Q ss_pred ------EcCCCCcccccccc
Q 043340 286 ------IRQTRGLDASAACG 299 (327)
Q Consensus 286 ------vR~~~G~di~aaCG 299 (327)
..-.+..||.-|||
T Consensus 296 GCvVNGPGEak~ADiGIagg 315 (346)
T TIGR00612 296 GCVVNGPGEAKHADIGISGG 315 (346)
T ss_pred CceecCCchhhccCeeeecC
Confidence 23456778888887
No 186
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=51.54 E-value=2.1e+02 Score=26.88 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+...+....+ .++++|+..| .|| +.+..+.-.++++...+
T Consensus 17 ~iD~~~l~~l~~~l~~---~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~ 64 (289)
T cd00951 17 SFDEDAYRAHVEWLLS---YGAAALFAAGGTGEFFSLTPDEYAQVVRAAVE 64 (289)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 4666666666655543 5899999888 577 55666666666665544
No 187
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=50.58 E-value=1.9e+02 Score=29.00 Aligned_cols=100 Identities=9% Similarity=0.094 Sum_probs=56.4
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcHH----HH----HHHHhc---CCCcceeecccCCCCcHHH-----HHHHHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPN----TI----KKLASY---KLQSTLAIRSAGVNDQVEH-----AVELAEL 239 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i----~~L~~~---~~~v~lavSI~GvND~~e~-----a~~L~~~ 239 (327)
+.+.++++.+.+.+. ++-|.|-|+.+.. .+ +++.++ ....-+.|+.+|+..+... .+.|++.
T Consensus 70 ~kL~~aI~~~~~~~~--P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~a~~al~~~ 147 (429)
T cd03466 70 KNLKKGLKNVIEQYN--PEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSIVKN 147 (429)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHHHHHHHHHH
Confidence 567777777654332 3457776665532 23 333332 1112466778888765433 2233333
Q ss_pred HHh-cCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 240 LHE-WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 240 l~~-l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
+.. -.....||||+-. .++.+++++.+.|++.|+.+.+
T Consensus 148 ~~~~~~~~~~VNlig~~---------~~~~D~~ei~~lL~~~Gl~~~~ 186 (429)
T cd03466 148 IAVDPDKIEKINVIAGM---------MSPADIREIKEILREFGIEYIL 186 (429)
T ss_pred hccCCCCCCcEEEECCC---------CChhHHHHHHHHHHHcCCCeEE
Confidence 221 1113469999632 1245799999999999999854
No 188
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=50.39 E-value=73 Score=27.25 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh-CCCeEEEcCCCCcccc
Q 043340 231 EHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDAS 295 (327)
Q Consensus 231 e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~-~gi~v~vR~~~G~di~ 295 (327)
.++.+|.++++......-|--+|+|..+. ..|..+.++.|.+.|++ .++++..-+++.+...
T Consensus 40 ~~~~~l~~li~~~~~~~vVVGlP~~m~g~---~~~~~~~~~~f~~~L~~r~~lpv~l~DERltTv~ 102 (141)
T COG0816 40 QDFNALLKLVKEYQVDTVVVGLPLNMDGT---EGPRAELARKFAERLKKRFNLPVVLWDERLSTVE 102 (141)
T ss_pred hhHHHHHHHHHHhCCCEEEEecCcCCCCC---cchhHHHHHHHHHHHHHhcCCCEEEEcCccCHHH
Confidence 47889999999876444455567775433 34477889999999975 5799998888876654
No 189
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=49.33 E-value=90 Score=30.66 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=65.9
Q ss_pred eEEEeeCCCCcCCh----hhHHHHHHHhhhccCCCCccEEEEcCCc--------HHHHHHHHhc---CCCcc--------
Q 043340 162 NVVFMGMGEPMLNL----KSVLEAHRCLNKDVQIGQRMITISTVGV--------PNTIKKLASY---KLQST-------- 218 (327)
Q Consensus 162 ~Ivf~G~GEPlln~----~~v~~~i~~l~~~~gi~~r~itisTnG~--------~~~i~~L~~~---~~~v~-------- 218 (327)
.-+||+++.|-.+. ..+.++++.++ .+|+ ++-++-|+. .+.+..+-+. ++...
T Consensus 31 ~~IFtsl~~~~~~~~~~~~~~~ell~~An-klg~---~vivDvnPsil~~l~~S~~~l~~f~e~G~~glRlD~gfS~eei 106 (360)
T COG3589 31 KRIFTSLLIPEEDAELYFHRFKELLKEAN-KLGL---RVIVDVNPSILKELNISLDNLSRFQELGVDGLRLDYGFSGEEI 106 (360)
T ss_pred cceeeecccCCchHHHHHHHHHHHHHHHH-hcCc---EEEEEcCHHHHhhcCCChHHHHHHHHhhhhheeecccCCHHHH
Confidence 45699998888773 33555566664 5788 788887763 1223333332 22111
Q ss_pred -------eeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 219 -------LAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 219 -------lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
+.|.+.--+.+. .+..|...-. ..-||+..|+..-.+|...+.+-..+--++++.+++.+.
T Consensus 107 ~~ms~~~lkieLN~S~it~-~l~~l~~~~a-----n~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~ 174 (360)
T COG3589 107 AEMSKNPLKIELNASTITE-LLDSLLAYKA-----NLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIKTA 174 (360)
T ss_pred HHHhcCCeEEEEchhhhHH-HHHHHHHhcc-----chhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCceE
Confidence 222222222222 3333332222 234566666665567888899999999999999999864
No 190
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=48.68 E-value=2.3e+02 Score=26.48 Aligned_cols=128 Identities=8% Similarity=0.020 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC--ChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML--NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQ 216 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll--n~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~ 216 (327)
+-+.+.+++++....+ .+.+-|-+ | ||+.. ..+.+..+++.+.+..++ .+.|.|.-. ..++.-++.-.+
T Consensus 21 ~~d~~~i~~~A~~~~~---~GAdiIDV-g-~~~~~~eE~~r~~~~v~~l~~~~~~---plsIDT~~~-~v~eaaL~~~~G 91 (261)
T PRK07535 21 AKDAAFIQKLALKQAE---AGADYLDV-N-AGTAVEEEPETMEWLVETVQEVVDV---PLCIDSPNP-AAIEAGLKVAKG 91 (261)
T ss_pred cCCHHHHHHHHHHHHH---CCCCEEEE-C-CCCCchhHHHHHHHHHHHHHHhCCC---CEEEeCCCH-HHHHHHHHhCCC
Confidence 3455666666655543 35555555 4 34432 234577777777654566 689988632 223333332013
Q ss_pred cceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcH---HHHHHHHHHHHhCCCe
Q 043340 217 STLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK---KAVLAFAGALESHKIT 283 (327)
Q Consensus 217 v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~---e~i~~f~~~L~~~gi~ 283 (327)
..+--|+.|.++. ..++.++++..+ +.+-+++.+..+. +...+ +.+++..+.+.++|++
T Consensus 92 ~~iINsIs~~~~~---~~~~~~l~~~~g--~~vv~m~~~~~g~---P~t~~~~~~~l~~~v~~a~~~GI~ 153 (261)
T PRK07535 92 PPLINSVSAEGEK---LEVVLPLVKKYN--APVVALTMDDTGI---PKDAEDRLAVAKELVEKADEYGIP 153 (261)
T ss_pred CCEEEeCCCCCcc---CHHHHHHHHHhC--CCEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4566666676532 235566666654 5566666553321 11222 3334555567788984
No 191
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=48.21 E-value=2.9e+02 Score=27.49 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=58.8
Q ss_pred eEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-------H-HHHHHHhc-----CCCcceeecccCCCC
Q 043340 162 NVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-------N-TIKKLASY-----KLQSTLAIRSAGVND 228 (327)
Q Consensus 162 ~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-------~-~i~~L~~~-----~~~v~lavSI~GvND 228 (327)
.+|| | || +.+.++++.+.+.+. ++-|.|-|..+. + .++++.+. +. .-+.++-||+..
T Consensus 60 d~V~-G-g~-----~~L~~~i~~~~~~~~--p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~-~vi~v~tpgf~g 129 (428)
T cd01965 60 AAVF-G-GE-----DNLIEALKNLLSRYK--PDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADF-PVVYASTPSFKG 129 (428)
T ss_pred CeeE-C-cH-----HHHHHHHHHHHHhcC--CCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCC-eEEEeeCCCCCC
Confidence 4454 7 65 566677776654332 234666555442 1 23444431 22 235677778775
Q ss_pred cHHH-----HHHHHHHHHhc---CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 229 QVEH-----AVELAELLHEW---GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 229 ~~e~-----a~~L~~~l~~l---~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
+... .+.|++.+..- .....||||+-.+.. . .++.++++.|++.|+.+...
T Consensus 130 ~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~-----~---~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 130 SHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLT-----P---GDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred cHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCC-----c---cCHHHHHHHHHHcCCCEEEe
Confidence 5432 23444433221 123469998633221 1 16788889999999998764
No 192
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=48.03 E-value=32 Score=25.53 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHhCCCeEEEcCCCCcccccccchh
Q 043340 266 YKKAVLAFAGALESHKITTSIRQTRGLDASAACGQL 301 (327)
Q Consensus 266 ~~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL 301 (327)
+-...-++.+.|++.|+.+.+-..+ .+|.++||.-
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P-~~i~~~CG~a 44 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTP-REISAGCGLA 44 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCC-hhccCCCCEE
Confidence 3345667778888888877655333 4677888863
No 193
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.37 E-value=2.5e+02 Score=26.48 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-cceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHR-VTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~-v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+..... .+ +++|+..| .|| +.+..++-.++++.+.+
T Consensus 17 ~iD~~~~~~~i~~~i~---~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~ 65 (290)
T TIGR00683 17 TINEKGLRQIIRHNID---KMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKD 65 (290)
T ss_pred CcCHHHHHHHHHHHHh---CCCcCEEEECCcccccccCCHHHHHHHHHHHHH
Confidence 4666666666655443 57 99999998 488 88888877777776654
No 194
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=46.63 E-value=3e+02 Score=28.30 Aligned_cols=109 Identities=12% Similarity=0.222 Sum_probs=55.7
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcHH----HHHHHHh----cCCCcceeecccCCCCcHHH-----HHHHHHHH-H
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPN----TIKKLAS----YKLQSTLAIRSAGVNDQVEH-----AVELAELL-H 241 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i~~L~~----~~~~v~lavSI~GvND~~e~-----a~~L~~~l-~ 241 (327)
+.+.+.++.+.+.+. ++-|.|.|..+.. .+..+++ .+.+ -+.++.+|+..+... ++.+++.+ .
T Consensus 71 ~~L~~aI~~~~~~~~--P~~I~V~sTC~selIGdDi~~~~~~~~~~~~p-vi~v~t~gf~g~~~~g~~~al~~lv~~~~~ 147 (511)
T TIGR01278 71 TRLVDTVRRVDDRFK--PDLIVVTPSCTSSLLQEDLGNLAAAAGLDKSK-VIVADVNAYRRKENQAADRTLTQLVRRFAK 147 (511)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEeCCChHHHhccCHHHHHHHhccCCCc-EEEecCCCcccchhHHHHHHHHHHHHHHHh
Confidence 456666666643332 2346666655432 2233332 1222 355666776554322 22333322 1
Q ss_pred hc------CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 242 EW------GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 242 ~l------~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
.. .....||||...+.+ |. ...++.+++++|++.|+.+.+.-..|.
T Consensus 148 ~~~~~~~~~~~~~VNIiG~~~l~---~~--~~~D~~elkrlL~~lGi~vn~v~p~g~ 199 (511)
T TIGR01278 148 EQPKPGRTTEKPSVNLLGPASLG---FH--HRHDLIELRRLLKTLGIEVNVVAPWGA 199 (511)
T ss_pred ccccccccCCCCcEEEEeCCCCC---CC--CHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 10 112458888644321 22 246688888999999999876644443
No 195
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=45.69 E-value=1.8e+02 Score=29.73 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=57.7
Q ss_pred ceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH----HH----HHHHhc-CCCcceeecccCCCCcHH
Q 043340 161 TNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN----TI----KKLASY-KLQSTLAIRSAGVNDQVE 231 (327)
Q Consensus 161 ~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i----~~L~~~-~~~v~lavSI~GvND~~e 231 (327)
..+|| | ||. .+.+.|..+.+.+. ++-|.|.|+.+.. .+ +++.+. +.+ -+.|+-+|+..+..
T Consensus 97 ~dvVf-G-g~~-----kL~~~I~ei~~~~~--P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~p-vi~v~t~Gf~g~~~ 166 (475)
T PRK14478 97 TDVVF-G-GEK-----KLFKAIDEIIEKYA--PPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIP-VIPVNSPGFVGNKN 166 (475)
T ss_pred Cceee-C-CHH-----HHHHHHHHHHHhcC--CCEEEEeCCChHHHhccCHHHHHHHHHHhhCCC-EEEEECCCcccchh
Confidence 35554 7 664 45555555543332 3457776665531 23 333222 222 35677777765422
Q ss_pred H-----HHHHHH-HHHhcC----CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcC
Q 043340 232 H-----AVELAE-LLHEWG----RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQ 288 (327)
Q Consensus 232 ~-----a~~L~~-~l~~l~----~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~ 288 (327)
. .+.|.+ |+.... ....||||.-.... .++.+++++|++.|+.+...-
T Consensus 167 ~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~---------gd~~elk~lL~~~Gl~v~~~~ 224 (475)
T PRK14478 167 LGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLA---------GELWQVKPLLDRLGIRVVACI 224 (475)
T ss_pred hhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCC---------CCHHHHHHHHHHcCCeEEEEc
Confidence 2 345555 332111 12469999732211 256778899999999987543
No 196
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=44.90 E-value=2.1e+02 Score=28.81 Aligned_cols=107 Identities=14% Similarity=0.245 Sum_probs=58.7
Q ss_pred eEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH----HH----HHHHHhc-----CCCcceeecccCCCC
Q 043340 162 NVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP----NT----IKKLASY-----KLQSTLAIRSAGVND 228 (327)
Q Consensus 162 ~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~----i~~L~~~-----~~~v~lavSI~GvND 228 (327)
.+|| | || +++.+.++.+.+.+ .++-|.|.|..+. +. ++++.++ +.+ -+.++-||+..
T Consensus 70 d~Vf-G-g~-----~~L~~~I~~~~~~~--~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~p-vi~v~tpgf~g 139 (432)
T TIGR01285 70 STIL-G-GD-----EHIEEAIDTLCQRN--KPKAIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTA-VVTVNTPDFKG 139 (432)
T ss_pred ceEE-C-cH-----HHHHHHHHHHHHhc--CCCEEEEeCCCcccccccCHHHHHHHHHhhcccccCCe-EEEecCCCcCC
Confidence 4455 6 55 56777777665433 2345777666542 22 3333332 222 35677777764
Q ss_pred cHHH-----HHHHHHHHHhc-----CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 229 QVEH-----AVELAELLHEW-----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 229 ~~e~-----a~~L~~~l~~l-----~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
+... ++.|.+.+... .....||||+-.+.. ..++.++.++|++.|+.+.+
T Consensus 140 ~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~--------~~d~~elk~lL~~~Gl~~~~ 199 (432)
T TIGR01285 140 SLEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLT--------PGDIEELRRMVEAFGLKPII 199 (432)
T ss_pred chHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCC--------ccCHHHHHHHHHHcCCceEE
Confidence 4322 33344332211 013469998744322 24688999999999999864
No 197
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=44.49 E-value=3.2e+02 Score=26.81 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=54.5
Q ss_pred CcceEEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhc-CCCcceeeccc------CCCCc
Q 043340 159 RVTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASY-KLQSTLAIRSA------GVNDQ 229 (327)
Q Consensus 159 ~v~~Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~-~~~v~lavSI~------GvND~ 229 (327)
+++.|.|.. |.+......++...+++ ..++ .+.+++--....+.+++.. +..+.+-|.+. |+.+
T Consensus 70 G~~~il~~~---~~~~~~~~~~l~~l~~~~~~~~i---~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g~~R~G~~~- 142 (382)
T cd06818 70 GVRRVLLAN---QLVGKANLRRLAALLAADPDFEF---FCLVDSVDNVRALAAFFAALERPLNVLIELGVPGGRTGVRT- 142 (382)
T ss_pred CCCeEEEec---CcCChHHHHHHHHhhhcCCCCCE---EEEECCHHHHHHHHHHHHhcCCceEEEEEECCCCCCCCCCC-
Confidence 566787764 33332222223333321 2233 3555544334455555532 22223333322 4433
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcH----------HHHHHHHHHHHhCCC
Q 043340 230 VEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK----------KAVLAFAGALESHKI 282 (327)
Q Consensus 230 ~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~----------e~i~~f~~~L~~~gi 282 (327)
++++.++++.+...+ .+++.-++.+.+..+..+.. +.+.++.+.|++.|.
T Consensus 143 ~~~~~~l~~~i~~~~---~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 202 (382)
T cd06818 143 EAEALALADAIAASP---ALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGL 202 (382)
T ss_pred HHHHHHHHHHHHcCC---CceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456777887777643 55666666666654433221 334556666655553
No 198
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=44.23 E-value=1.2e+02 Score=29.16 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=37.9
Q ss_pred CCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-HHHHHH----------HhcCCCcceeecccCCCCcHHHHHHHHH
Q 043340 170 EPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-NTIKKL----------ASYKLQSTLAIRSAGVNDQVEHAVELAE 238 (327)
Q Consensus 170 EPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-~~i~~L----------~~~~~~v~lavSI~GvND~~e~a~~L~~ 238 (327)
+|-+. +.+.+.++.+.+. |. ++|.|-.-|.+ +.++.| +.. .+..--..+|-+||++.-+..|++
T Consensus 241 ~~Wl~-P~~~~~l~~l~~~-G~--k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~-~G~~~~~~vp~lN~~p~fi~~l~~ 315 (322)
T TIGR00109 241 EPWLG-PYTEELLEKLGEQ-GV--QHIVVVPIGFTADHLETLYEIDEEYREVAED-AGGDKYQRCPALNAKPEFIEAMAT 315 (322)
T ss_pred CCcCC-CCHHHHHHHHHHc-CC--ceEEEECCcccccchhHHHhhhHHHHHHHHH-cCCCeEEECCCCCCCHHHHHHHHH
Confidence 66666 3566677666433 44 57777777763 222222 211 112212337777888877777777
Q ss_pred HHHh
Q 043340 239 LLHE 242 (327)
Q Consensus 239 ~l~~ 242 (327)
++.+
T Consensus 316 ~v~~ 319 (322)
T TIGR00109 316 LVKK 319 (322)
T ss_pred HHHH
Confidence 6654
No 199
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=44.03 E-value=40 Score=32.98 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHcCCC------------chHHHHHHHHHHhcC------CCCCCCCCCCCC-HHHHHHHHhcCCCCCCCce
Q 043340 13 LYPAAQVICFFFFTC------------PSRGRQRAPWHVRAG------ASKTRRRPRPVP-QSFRNDLQEAGWTVGRLPI 73 (327)
Q Consensus 13 ~~~~l~~~~~~~g~~------------~~ra~qi~~~~~~~~------~~~~~~~~~~l~-~~~r~~l~~~~~~~~~~~~ 73 (327)
+.+.|++.....|.+ .-|.-|-+....++. +. ..-=|.|++ ..+.+.|.+. +.+....+
T Consensus 129 ~l~~L~ea~~~~g~~rvavvG~PC~i~avrk~~~~~~~~~~~~~~i~~~i-GlfC~e~f~y~~l~~~l~e~-~gvd~~dV 206 (332)
T COG1035 129 NLSALKEAVRKYGLERVAVVGTPCQIQAVRKLQKFDLGLKHRREKIVYVI-GLFCMENFSYEGLKKFLEED-LGVDPEDV 206 (332)
T ss_pred hHHHHHHHHhhcCCceEEEeecchHHHHHHHHhhccccccccccceEEEE-eeecCCCcCHHHHHHHHHHH-hCCCHHHe
Confidence 455666666555532 245555555554421 01 111244554 3468888887 56776666
Q ss_pred eeEEecCCCcEEEEEEecCCCeEEEEeeccC
Q 043340 74 FRTVTAADGTVKLLIKLEDNRLIETVGIPVE 104 (327)
Q Consensus 74 ~~~~~s~dgt~K~l~~l~dg~~iE~V~i~~~ 104 (327)
....... -||.+++.||. .+.+|-.
T Consensus 207 ~k~di~k---Gk~~v~~~dG~---~~~~~l~ 231 (332)
T COG1035 207 EKMDIRK---GKFVVELKDGE---VKEIPLK 231 (332)
T ss_pred EEEEeeC---ceEEEEecCCc---EEEEEhh
Confidence 6665542 59999999994 4446543
No 200
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=43.27 E-value=1e+02 Score=29.76 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEe---eCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-HHH----------H
Q 043340 143 HEIVGQVLAIEEIFKHRVTNVVFM---GMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-NTI----------K 208 (327)
Q Consensus 143 ~EIv~qv~~~~~~~~~~v~~Ivf~---G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-~~i----------~ 208 (327)
.++.+.+....+.++..--.++|- | ++|-+. +.+.+.++.+.+. |. ++|.|-.-|.+ +.+ +
T Consensus 207 ~~~~~t~~~i~~~l~~~~~~~~fQS~~g-~~~WL~-P~~~~~l~~l~~~-G~--~~V~v~p~gFv~D~lETl~eidie~r 281 (316)
T PF00762_consen 207 AQCEETARLIAERLGLPEWRLAFQSRFG-PGEWLG-PSTEDVLEELAKE-GV--KRVVVVPPGFVSDCLETLYEIDIEYR 281 (316)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEEEES-SS-SS-BSS-SBHHHHHHHHHHC-T---SEEEEEETT-SSSSHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECCCC-CCCCcc-ccHHHHHHHHHhc-CC--CeEEEECCccccccHhHHHHHHHHHH
Confidence 344444444444443221344444 6 789999 5688899988654 54 68999999974 223 3
Q ss_pred HHHhcCCCcceeecccCCCCcHHHHHHHHHHHHh
Q 043340 209 KLASYKLQSTLAIRSAGVNDQVEHAVELAELLHE 242 (327)
Q Consensus 209 ~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~ 242 (327)
+++.. .+..-...+|-+||+++-++.|++++.+
T Consensus 282 e~~~~-~G~~~~~~ip~lN~~~~fi~~La~~v~~ 314 (316)
T PF00762_consen 282 ELAEE-AGGEEFVRIPCLNDSPEFIEALADLVRE 314 (316)
T ss_dssp HHHHH-HTCCEEEE---STT-HHHHHHHHHHHHH
T ss_pred HHHHH-cCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 33322 1222334488999999999999988764
No 201
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=42.75 E-value=3e+02 Score=26.02 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHhCCCeEEEcCC
Q 043340 264 RPYKKAVLAFAGALESHKITTSIRQT 289 (327)
Q Consensus 264 ~p~~e~i~~f~~~L~~~gi~v~vR~~ 289 (327)
..+.++++++.+.++++|+.+.+-..
T Consensus 141 ~~~~~~~~~l~~~a~~~~~~ii~De~ 166 (330)
T TIGR01140 141 LIPPETLLALAARLRARGGWLVVDEA 166 (330)
T ss_pred CCCHHHHHHHHHHhHhcCCEEEEECc
Confidence 45889999999999999998766543
No 202
>cd01982 Chlide_reductase_Z Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=42.42 E-value=2.7e+02 Score=28.01 Aligned_cols=43 Identities=7% Similarity=-0.119 Sum_probs=28.6
Q ss_pred ceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCccc
Q 043340 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDA 294 (327)
Q Consensus 247 ~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di 294 (327)
..||||+..+. .+. .+.++++++++|+..|+.+...-..|.++
T Consensus 156 ~~VNIIG~~~g---~~~--~~gDl~ElkrLLe~~Gl~vn~v~~~gt~l 198 (412)
T cd01982 156 GTVNIIGPSYG---CFN--SPSDLAEVKRLVTGIGAEVNHVYPFESHL 198 (412)
T ss_pred CeEEEECCCcC---cCC--CHHHHHHHHHHHHHcCCcEEEECCCCCCH
Confidence 45999863311 111 34678889999999999987665555543
No 203
>PRK00035 hemH ferrochelatase; Reviewed
Probab=42.19 E-value=3.2e+02 Score=26.19 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=54.6
Q ss_pred ceEEEeeCCCCcC-------ChhhHHHHHHHhhhccCCCCc--cEEEEc-CCc--------HHHHHHHHhcCCCcceeec
Q 043340 161 TNVVFMGMGEPML-------NLKSVLEAHRCLNKDVQIGQR--MITIST-VGV--------PNTIKKLASYKLQSTLAIR 222 (327)
Q Consensus 161 ~~Ivf~G~GEPll-------n~~~v~~~i~~l~~~~gi~~r--~itisT-nG~--------~~~i~~L~~~~~~v~lavS 222 (327)
..++|+|-|=|.- ....+.+.++.+.+.+|++.. .++..+ .|. .+.+++|.+.|.. ++.|-
T Consensus 190 ~~llfs~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k-~V~v~ 268 (333)
T PRK00035 190 DRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVK-KVVVV 268 (333)
T ss_pred cEEEEecCCCchHHhhcCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCC-eEEEE
Confidence 6799999663322 234566677776655664222 334433 231 1347788877643 33332
Q ss_pred -ccCCCCcHHHHHHHH----HHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC
Q 043340 223 -SAGVNDQVEHAVELA----ELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH 280 (327)
Q Consensus 223 -I~GvND~~e~a~~L~----~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~ 280 (327)
+--+.|..|.+.++. +.+...+. ..+..+|. -..++.-++.+.+.+++.
T Consensus 269 P~~Fv~D~lEtl~ei~~e~~~~~~~~G~-~~~~~~~~--------ln~~~~~i~~l~~~v~~~ 322 (333)
T PRK00035 269 PPGFVSDHLETLEEIDIEYREIAEEAGG-EEFRRIPC--------LNDSPEFIEALADLVREN 322 (333)
T ss_pred CCeeeccchhHHHHHHHHHHHHHHHcCC-ceEEECCC--------CCCCHHHHHHHHHHHHHH
Confidence 323345544444333 33344331 12333331 123456677777777663
No 204
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.78 E-value=2.3e+02 Score=28.34 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=55.4
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcH----HHH----HHHHhc-CCCcceeecccCCCC-cH-----HHHHHHHHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVP----NTI----KKLASY-KLQSTLAIRSAGVND-QV-----EHAVELAELL 240 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i----~~L~~~-~~~v~lavSI~GvND-~~-----e~a~~L~~~l 240 (327)
+.+.++++.+.+.+. +++-|.|.|.-+. +.+ +++.+. +.+ -+.++-+|+.. +. ...+.+.+.+
T Consensus 84 ~kL~~~I~~~~~~~~-p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~~~~p-vi~v~t~gf~g~s~~~G~~~a~~ai~~~l 161 (421)
T cd01976 84 KKLAKAIDEAYELFP-LNKGISVQSECPVGLIGDDIEAVARKASKELGIP-VVPVRCEGFRGVSQSLGHHIANDAIRDHI 161 (421)
T ss_pred HHHHHHHHHHHHhCC-CccEEEEECCChHHHhccCHHHHHHHHHHhhCCC-EEEEeCCCccCCcccHHHHHHHHHHHHHH
Confidence 356666666654332 1134666555432 223 333222 222 35677777654 21 1233455444
Q ss_pred HhcC-----CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcc
Q 043340 241 HEWG-----RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293 (327)
Q Consensus 241 ~~l~-----~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~d 293 (327)
.... ....||||+-... ..++.++++.|++.|+.+...-..|..
T Consensus 162 ~~~~~~~~~~~~~VNiiG~~~~---------~~d~~el~~lL~~~Gi~v~~~~~~~~t 210 (421)
T cd01976 162 LGKRNEFEPTPYDVNIIGDYNI---------GGDAWASRILLEEMGLRVVAQWSGDGT 210 (421)
T ss_pred hccCCccCCCCCeEEEEecCCC---------CccHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 3211 1357999972111 135677889999999998765444433
No 205
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=41.55 E-value=1.5e+02 Score=28.83 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH-HHHHHHhcC---------CCcceeecccCCCCcHHHHHHHHH
Q 043340 169 GEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN-TIKKLASYK---------LQSTLAIRSAGVNDQVEHAVELAE 238 (327)
Q Consensus 169 GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~-~i~~L~~~~---------~~v~lavSI~GvND~~e~a~~L~~ 238 (327)
.||-+. +.+-+.++.+.+. |. ++|.+---|.+. .++.|-+.. .+..--.-+|-+||+++.+.-|++
T Consensus 237 ~~~WL~-P~t~~~l~~L~~~-g~--k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~ 312 (320)
T COG0276 237 PEPWLQ-PYTDDLLEELGEK-GV--KKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALAD 312 (320)
T ss_pred CCCCCC-CCHHHHHHHHHhc-CC--CeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCCCHHHHHHHHH
Confidence 788888 4577888877543 44 567777777642 233322211 011111237788999988888888
Q ss_pred HHHh
Q 043340 239 LLHE 242 (327)
Q Consensus 239 ~l~~ 242 (327)
+++.
T Consensus 313 lv~~ 316 (320)
T COG0276 313 LVRE 316 (320)
T ss_pred HHHH
Confidence 8775
No 206
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=40.94 E-value=2.1e+02 Score=28.86 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=60.0
Q ss_pred eEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH----HH----HHHHhc-CCCcceeecccCCCCcHH-
Q 043340 162 NVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN----TI----KKLASY-KLQSTLAIRSAGVNDQVE- 231 (327)
Q Consensus 162 ~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i----~~L~~~-~~~v~lavSI~GvND~~e- 231 (327)
.|| +| ||. .+.++++.+.+.+. ++-|.|.|+.+.. .+ +++.+. +.+ -+.|+.+|+..+..
T Consensus 100 dvV-fG-g~~-----kL~~~I~e~~~~~~--P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~-vi~v~t~gf~g~~~~ 169 (456)
T TIGR01283 100 DVI-FG-GEK-----KLFHAIREIVERYH--PPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIP-VIPVDSEGFYGSKNL 169 (456)
T ss_pred ceE-eC-CHH-----HHHHHHHHHHHhCC--CCEEEEECCChHHHhcCCHHHHHHHHHHHhCCC-EEEEECCCCccchhH
Confidence 444 56 654 55666665544332 3457766665432 23 333222 222 35677788754432
Q ss_pred ----HHHHHHHHHHhcC---------CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 232 ----HAVELAELLHEWG---------RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 232 ----~a~~L~~~l~~l~---------~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
-.+.|.+++.... ....||||.-.+.. .++.++.+.|++.|+.+...-..+.
T Consensus 170 G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~---------~d~~el~~lL~~~Gl~v~~~~~~~~ 234 (456)
T TIGR01283 170 GNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVA---------GEFWHVKPLLEKLGIRVLATITGDS 234 (456)
T ss_pred HHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCc---------ccHHHHHHHHHHcCCeEEEEeCCCC
Confidence 2344555553210 02469998632211 2456888999999999876544443
No 207
>PRK15063 isocitrate lyase; Provisional
Probab=40.75 E-value=63 Score=32.69 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC-CCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~-~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
+.++++++++-++. ....|++-||..+...| +..++++|+.|++.|.+.|+...+
T Consensus 289 d~ee~~~fa~~v~~---~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~~Gy~~~~ 344 (428)
T PRK15063 289 DLEEARRFAEAIHA---KFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQF 344 (428)
T ss_pred CHHHHHHHHHhhcc---cCccceeecCCCCCcccccccCHHHHHHHHHHHHHcCceEEE
Confidence 35666666654432 23567888887666554 357899999999999999988654
No 208
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=40.29 E-value=3.7e+02 Score=27.32 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=56.2
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcH----HHHHHHHh--------cC--CC-cceeecccCCCCcHH-----HHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVP----NTIKKLAS--------YK--LQ-STLAIRSAGVNDQVE-----HAVE 235 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i~~L~~--------~~--~~-v~lavSI~GvND~~e-----~a~~ 235 (327)
+++.++++.+.+.+. .++-|.|.|.... +.++.+++ +. .+ .-+.|+-||+..+.. -++.
T Consensus 75 ~kL~~aI~~~~~~~~-~p~~I~V~ttC~~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~G~~~a~~a 153 (457)
T TIGR02932 75 KRIEEGVLTLARRYP-NLRVIPIITTCSTETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVTGYAECVKS 153 (457)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEECCchHHhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHHHHHHHHHH
Confidence 567777776654321 1234776655542 22333222 11 11 225677777775432 3445
Q ss_pred HHHHH-HhcC-CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 236 LAELL-HEWG-RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 236 L~~~l-~~l~-~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
|++.+ ...+ ....||||+- |. ++.++++++++|+..|+.+.+.
T Consensus 154 li~~~~~~~~~~~~~VNii~~-------~~--~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 154 VIKTIAAKKGEPSGKLNVFPG-------WV--NPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred HHHHHhhccCCCCCcEEEECC-------CC--ChHHHHHHHHHHHHcCCCEEEE
Confidence 55544 2111 1246999962 11 2467899999999999998765
No 209
>PRK01254 hypothetical protein; Provisional
Probab=40.09 E-value=3.6e+02 Score=29.18 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=17.2
Q ss_pred cccCCCCcHHHHHHHHHHHHhcC
Q 043340 222 RSAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 222 SI~GvND~~e~a~~L~~~l~~l~ 244 (327)
+.|| ++++|+++|++|++.++
T Consensus 566 GhPG--eTeeDf~eLaefLkel~ 586 (707)
T PRK01254 566 AHPG--TTDEDMVNLALWLKKNR 586 (707)
T ss_pred ECCC--CCHHHHHHHHHHHHHhC
Confidence 3555 67789999999999875
No 210
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=40.02 E-value=2.4e+02 Score=28.78 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=58.7
Q ss_pred ceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH----HHH----HHHHhc-CCCcceeecccCCCC-cH
Q 043340 161 TNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP----NTI----KKLASY-KLQSTLAIRSAGVND-QV 230 (327)
Q Consensus 161 ~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i----~~L~~~-~~~v~lavSI~GvND-~~ 230 (327)
..+|| | ||. .+.++++.+.+.+. +++-|.|.|.-.. +.+ +++.+. +.+ -+.++-+|+.. +.
T Consensus 109 ~diVf-G-Ge~-----kL~~aI~e~~~~~~-P~~~I~V~tTC~~~lIGDDi~av~~~~~~~~~~p-Vi~v~t~gf~G~s~ 179 (466)
T TIGR01282 109 KDIVF-G-GDK-----KLKKAIDEIEELFP-LNKGISIQSECPVGLIGDDIEAVAKKASKELGKP-VVPVRCEGFRGVSQ 179 (466)
T ss_pred cceec-C-cHH-----HHHHHHHHHHHhCC-cccEEEEeCCChHHHhccCHHHHHHHHhhhcCCc-EEEEeCCCcCCchh
Confidence 34554 6 654 45566666544332 1134666554332 222 333222 233 36677778754 22
Q ss_pred H-----HHHHHHHHHHhcC-------CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCC
Q 043340 231 E-----HAVELAELLHEWG-------RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTR 290 (327)
Q Consensus 231 e-----~a~~L~~~l~~l~-------~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~ 290 (327)
. ..+.+.+++.... ....||||+-...+ .++.+++++|++.|+.+...-+.
T Consensus 180 ~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~---------gd~~eik~lL~~~Gi~v~~~~sg 242 (466)
T TIGR01282 180 SLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIG---------GDAWESRILLEEIGLRVVAQWSG 242 (466)
T ss_pred hHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCCc---------ccHHHHHHHHHHcCCeEEEEECC
Confidence 1 1234555443211 13579999722221 35678999999999998765443
No 211
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=38.87 E-value=4e+02 Score=26.40 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHHh-cCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-----H---HHHH
Q 043340 139 NLSSHEIVGQVLAIEEIF-KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-----N---TIKK 209 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~-~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-----~---~i~~ 209 (327)
..+++-+++-.+...+.+ ..+..+|+++= ---+.....++-+.+.+...+ +-|+.|+-.|.. . .+-.
T Consensus 152 ~~t~eamveSAl~~~~~le~~~f~~iviS~---KsS~v~~~i~ayrlla~~~dy-PLHlGvTEAG~~~~G~iKSa~gig~ 227 (360)
T PRK00366 152 EPTPEALVESALRHAKILEELGFDDIKISV---KASDVQDLIAAYRLLAKRCDY-PLHLGVTEAGMGFKGTVKSAAGLGA 227 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHHHHHhcCCC-CceecccCCCCCCCceehhHHHHHH
Confidence 356666776666554443 23567777765 233444455566666544333 238888777652 1 4677
Q ss_pred HHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcC
Q 043340 210 LASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 210 L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~ 244 (327)
|+.+|++.++.||+.+ |-.++++---++|+.++
T Consensus 228 LL~~GIGDTiRVSLt~--~P~~EV~va~~IL~slg 260 (360)
T PRK00366 228 LLQEGIGDTIRVSLTA--DPVEEVKVGQEILQSLG 260 (360)
T ss_pred HHHhcCCCeEEEeCCC--CCHHHHHHHHHHHHHcC
Confidence 8888888888898877 44566665556777665
No 212
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=38.20 E-value=2.3e+02 Score=28.00 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=57.4
Q ss_pred ceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH----HH----HHHHhc-CCCcceeecccCCCCcHH
Q 043340 161 TNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN----TI----KKLASY-KLQSTLAIRSAGVNDQVE 231 (327)
Q Consensus 161 ~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i----~~L~~~-~~~v~lavSI~GvND~~e 231 (327)
+.+|| | || +.+.++++.+.+.+. ++-|.|-|+.+.. .+ +++.+. +. .-+.++.+|+..+..
T Consensus 64 ~d~Vf-G-g~-----~~L~~~i~~~~~~~~--P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~-~vi~v~t~gf~g~~~ 133 (410)
T cd01968 64 KDVIF-G-GE-----KKLYKAILEIIERYH--PKAVFVYSTCVVALIGDDIDAVCKTASEKFGI-PVIPVHSPGFVGNKN 133 (410)
T ss_pred cceee-c-cH-----HHHHHHHHHHHHhCC--CCEEEEECCCchhhhccCHHHHHHHHHHhhCC-CEEEEECCCcccChh
Confidence 34555 6 54 345556665543322 3456665555421 22 333222 22 235667777655422
Q ss_pred -----HHHHHHHHHHhcC-C----cceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCC
Q 043340 232 -----HAVELAELLHEWG-R----GHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRG 291 (327)
Q Consensus 232 -----~a~~L~~~l~~l~-~----~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G 291 (327)
-.+.+++.+.... . ...||||+-... ..++.++++.|++.|+.+...-..+
T Consensus 134 ~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~---------~~d~~el~~lL~~~Gl~v~~~~~~~ 194 (410)
T cd01968 134 LGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNV---------AGELWGVKPLLEKLGIRVLASITGD 194 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC---------cccHHHHHHHHHHcCCeEEEEeCCC
Confidence 2345555543210 0 246888863211 1246788888999999887654333
No 213
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=38.12 E-value=1.1e+02 Score=25.60 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh-CCCeEEEcCCCCccccc
Q 043340 231 EHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASA 296 (327)
Q Consensus 231 e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~-~gi~v~vR~~~G~di~a 296 (327)
..+..|.++++..++..-|--+|+|..+ ...+....+.+|.+.|++ .+++|..-+++.+...|
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG---~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A 98 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDG---TEGPLTERAQKFANRLEGRFGVPVVLWDERLSTVEA 98 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCc---CcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHH
Confidence 5677888888876644445556777533 345667889999999965 48888888888776543
No 214
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.97 E-value=4e+02 Score=26.81 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=53.7
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcH----HH----HHHHHhcCCCcceeecccCCCCcH-H-----HHHHHHH-HH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVP----NT----IKKLASYKLQSTLAIRSAGVNDQV-E-----HAVELAE-LL 240 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~----i~~L~~~~~~v~lavSI~GvND~~-e-----~a~~L~~-~l 240 (327)
+.+.++|+.+.+.+. +++-|.|.|.-+. +. ++++.+.....-+.++.+|+.... . ..+.+.+ ++
T Consensus 103 ~~L~~aI~~~~~~~~-p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~l~ 181 (443)
T TIGR01862 103 KKLKKLIHEAFTEFP-LIKAISVYATCPTGLIGDDIEAVAKEVSKEIGKDVVAVNCPGFAGVSQSKGHHIANIAVINDKV 181 (443)
T ss_pred HHHHHHHHHHHHhCC-ccceEEEECCChHHHhccCHHHHHHHHHHhcCCCEEEEecCCccCCccchHHHHHHHHHHHHHh
Confidence 456677776654332 1134665554332 12 333332211124667777776521 1 1223333 22
Q ss_pred HhcC----CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCC
Q 043340 241 HEWG----RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRG 291 (327)
Q Consensus 241 ~~l~----~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G 291 (327)
.... ....||||+-... ...++++.++|++.|+.+...-..|
T Consensus 182 ~~~~~~~~~~~~VNiig~~~~---------~~d~~el~~lL~~~Gl~v~~~~~~~ 227 (443)
T TIGR01862 182 GTREKEITTEYDVNIIGEYNI---------GGDAWVMRIYLEEMGIQVVATFTGD 227 (443)
T ss_pred CCCCcccCCCCeEEEEccCcC---------cccHHHHHHHHHHcCCeEEEEECCC
Confidence 1100 1346999973211 2357788899999999987544433
No 215
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=36.95 E-value=1e+02 Score=26.30 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhh----ccCCCCccE-EEEcCC
Q 043340 128 FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK----DVQIGQRMI-TISTVG 202 (327)
Q Consensus 128 fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~----~~gi~~r~i-tisTnG 202 (327)
||.++...-..-...+++++.... .+.+|.|.| |+.-.+-+.++++.+++ ...+ +| .|-|.|
T Consensus 52 F~ln~~~~~p~~~Gi~gvl~~Y~~-------~~~~v~l~G---PT~fapiI~~a~~~a~~~~~~~~~Y---~iLlIlTDG 118 (146)
T PF07002_consen 52 FPLNGNPQNPECQGIDGVLEAYRK-------ALPKVQLSG---PTNFAPIINHAAKIAKQSNQNGQQY---FILLILTDG 118 (146)
T ss_pred eeeecCCCCCcccCHHHHHHHHHH-------HhhheEECC---CccHHHHHHHHHHHHhhhccCCceE---EEEEEeccc
Confidence 444443222233445666665443 357899988 88766777777777752 1112 23 457888
Q ss_pred cH
Q 043340 203 VP 204 (327)
Q Consensus 203 ~~ 204 (327)
..
T Consensus 119 ~i 120 (146)
T PF07002_consen 119 QI 120 (146)
T ss_pred cc
Confidence 64
No 216
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=36.93 E-value=3.5e+02 Score=25.15 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhH---HHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSV---LEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL 215 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v---~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~ 215 (327)
.-+++++++++....+ .+.+-|-+ | |+|.. .+.. .+++..+.+..++ .|.|.|.=. ..++.-++.-.
T Consensus 22 ~~~~d~~~~~A~~~~~---~GAdiIDI-G-~~~~~-~~~~ee~~r~v~~i~~~~~~---piSIDT~~~-~v~e~aL~~~~ 91 (252)
T cd00740 22 AEDYDEALDVARQQVE---GGAQILDL-N-VDYGG-LDGVSAMKWLLNLLATEPTV---PLMLDSTNW-EVIEAGLKCCQ 91 (252)
T ss_pred cCCHHHHHHHHHHHHH---CCCCEEEE-C-CCCCC-CCHHHHHHHHHHHHHHhcCC---cEEeeCCcH-HHHHHHHhhCC
Confidence 4566788887776654 45666665 5 45653 2333 3333334433355 688988622 23343333301
Q ss_pred CcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCC
Q 043340 216 QSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPI 257 (327)
Q Consensus 216 ~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~ 257 (327)
+..+--||.|.+++ +...++++.+++.+ +.+-++++++.
T Consensus 92 G~~iINsIs~~~~~-e~~~~~~~~~~~~~--~~vV~m~~~~~ 130 (252)
T cd00740 92 GKCVVNSINLEDGE-ERFLKVARLAKEHG--AAVVVLAFDEQ 130 (252)
T ss_pred CCcEEEeCCCCCCc-cccHHHHHHHHHhC--CCEEEeccCCC
Confidence 35577777776632 33556777777755 56777777643
No 217
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=36.62 E-value=3.5e+02 Score=25.08 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|.+.|. || +.++.+.-.++++.+.+
T Consensus 17 ~iD~~~~~~~i~~l~~---~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~ 64 (284)
T cd00950 17 SVDFDALERLIEFQIE---NGTDGLVVCGTTGESPTLSDEEHEAVIEAVVE 64 (284)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECCCCcchhhCCHHHHHHHHHHHHH
Confidence 5777777776666553 58999998884 66 45566666667766654
No 218
>PHA01083 hypothetical protein
Probab=35.68 E-value=33 Score=29.56 Aligned_cols=41 Identities=15% Similarity=-0.046 Sum_probs=34.2
Q ss_pred cccccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCC
Q 043340 4 CFLAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGAS 44 (327)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~ 44 (327)
-|||.+.+++++++--.+..--.+..+++++|+-|+||-..
T Consensus 50 ~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKlng 90 (149)
T PHA01083 50 IFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQNG 90 (149)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 37889999999988777776677888999999999997643
No 219
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=34.48 E-value=1.6e+02 Score=24.62 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhC--CCeEEEcCCCCcccccc
Q 043340 230 VEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESH--KITTSIRQTRGLDASAA 297 (327)
Q Consensus 230 ~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~--gi~v~vR~~~G~di~aa 297 (327)
.+.+.+|.++++..++..-|--+|+|..+ -..+..+.+.+|.+.|++. +++|..-+++.+...|.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G---~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~TT~~A~ 103 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDG---SESEQARRVRKFAEELKKRFPGIPVILVDERLTTKEAE 103 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTS---SC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCSHHCCH
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCC---CccHHHHHHHHHHHHHHHhcCCCcEEEECCChhHHHHH
Confidence 35678888888886544455557887533 3456778999999999875 99999999888877665
No 220
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=34.32 E-value=1.3e+02 Score=25.41 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh-CCCeEEEcCCCCccccc
Q 043340 231 EHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASA 296 (327)
Q Consensus 231 e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~-~gi~v~vR~~~G~di~a 296 (327)
.++.+|.++++..++..-|--+|++.. ....+....+.+|.+.|++ .++++..-+++.+...|
T Consensus 41 ~~~~~l~~~i~~~~i~~iVvGlP~~~~---G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A 104 (138)
T PRK00109 41 PDWDRLEKLIKEWQPDGLVVGLPLNMD---GTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEA 104 (138)
T ss_pred hHHHHHHHHHHHhCCCEEEEeccCCCC---CCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHH
Confidence 457888888887654344444677643 2345667888999999975 48888888877766544
No 221
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=33.94 E-value=1.9e+02 Score=21.17 Aligned_cols=48 Identities=25% Similarity=0.183 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 233 AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 233 a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
.-+++..+..++ .++.+|..++... +..+++-.+.+.+.+++.|+.+.
T Consensus 11 g~E~A~~l~~~g--~~vtli~~~~~~~---~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 11 GIELAEALAELG--KEVTLIERSDRLL---PGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSSSSS---TTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHhC--cEEEEEeccchhh---hhcCHHHHHHHHHHHHHCCCEEE
Confidence 346777777765 6889887776543 55567777888899999988764
No 222
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=33.93 E-value=4.8e+02 Score=25.87 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=52.2
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcH----HH----HHHHHhcCC-CcceeecccCCCCc-HH--H---HHHHHHHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVP----NT----IKKLASYKL-QSTLAIRSAGVNDQ-VE--H---AVELAELL 240 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~----i~~L~~~~~-~v~lavSI~GvND~-~e--~---a~~L~~~l 240 (327)
+.+.++++.+.+.+. .++-|.|.|+-+. +. ++++.+... -.-+.++-||+.+. .. . .+.+.+.+
T Consensus 73 ~~L~~aI~~~~~~~p-~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~tpgf~g~~~~~G~~~a~~al~~~l 151 (415)
T cd01977 73 KKLKKNIIEAFKEFP-DIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWINQK 151 (415)
T ss_pred HHHHHHHHHHHHhCC-CCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEeCCCcCCcchhHHHHHHHHHHHHHh
Confidence 456667776654331 1234666555432 12 344433321 12466777887653 22 1 12333322
Q ss_pred H-hcC----CcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 241 H-EWG----RGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 241 ~-~l~----~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
- ... ....||||..+. ...++++++++|++.|+.+...
T Consensus 152 ~~~~~~~~~~~~~VNliG~~~---------~~~d~~ei~~lL~~~Gl~v~~~ 194 (415)
T cd01977 152 VGTVEPEITSDYTINYIGDYN---------IQGDTEVLQKYFERMGIQVLST 194 (415)
T ss_pred hCcCCcCcCCCCcEEEEccCC---------CcccHHHHHHHHHHcCCeEEEE
Confidence 1 111 124699986321 1245788899999999998533
No 223
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.85 E-value=3.9e+02 Score=24.78 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=43.3
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcccccccchhh
Q 043340 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACGQLR 302 (327)
Q Consensus 223 I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~ 302 (327)
+.|.. ..++.+.+++.+...+ +++.|.++. +.+.++...++..+.|+.-.+-+-.+.=|+..-|.-+
T Consensus 157 M~Gl~-~leE~~avA~aca~~g-------~~lEPTGGI-----dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~Tr 223 (236)
T TIGR03581 157 MGGLK-HLEEYAAVAKACAKHG-------FYLEPTGGI-----DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTR 223 (236)
T ss_pred cCCcc-cHHHHHHHHHHHHHcC-------CccCCCCCc-----cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCC
Confidence 55543 3556666666665533 234565554 4566777777778888888777777777777766554
No 224
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=33.73 E-value=4.7e+02 Score=26.12 Aligned_cols=103 Identities=10% Similarity=0.172 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhc----cCCCCccEEEEcCCcH--------HHHHHHH-
Q 043340 145 IVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD----VQIGQRMITISTVGVP--------NTIKKLA- 211 (327)
Q Consensus 145 Iv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~----~gi~~r~itisTnG~~--------~~i~~L~- 211 (327)
+.+.+....+.+ +.+.|.+..-.-|-+-=|.+..+++.++++ .++ .-+.++|-|+. ..++.|.
T Consensus 69 L~~~i~~~~~~~--~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~--~vi~v~t~gf~g~~~~G~~~a~~al~~ 144 (417)
T cd01966 69 LEEALDTLAERA--KPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADV--PVVYVSTPDFEGSLEDGWAAAVEAIIE 144 (417)
T ss_pred HHHHHHHHHHhc--CCCEEEEECCCcccccccCHHHHHHHHHhhccccCCC--eEEEecCCCCCCcHHHHHHHHHHHHHH
Confidence 344444443333 234444444355555556777777777544 233 35678887752 1223333
Q ss_pred ---hcCC---Ccceeec-ccCCCCcHHHHHHHHHHHHhcCCcceEEEEe
Q 043340 212 ---SYKL---QSTLAIR-SAGVNDQVEHAVELAELLHEWGRGHHVNLIP 253 (327)
Q Consensus 212 ---~~~~---~v~lavS-I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp 253 (327)
.... ...-.|. |+|.|-++.|+++|.++++.++ .+++++|
T Consensus 145 ~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~G--l~v~~l~ 191 (417)
T cd01966 145 ALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFG--LEPIILP 191 (417)
T ss_pred HhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcC--CceEEec
Confidence 2110 0011122 5566555778888888888866 5666664
No 225
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.71 E-value=2.6e+02 Score=25.74 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc--HHHHHHHHh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV--PNTIKKLAS 212 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~--~~~i~~L~~ 212 (327)
+.|.+|+++.+....++....-..|.|.-+-.+-..++.+.++++.+.+. +...|.+ +|.|. +..+.++..
T Consensus 102 ~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~i~l~DT~G~~~P~~v~~lv~ 175 (259)
T cd07939 102 GKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEA---GADRLRFADTVGILDPFTTYELIR 175 (259)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHC---CCCEEEeCCCCCCCCHHHHHHHHH
No 226
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=33.28 E-value=2.4e+02 Score=26.19 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCcH-H-HHH----HHH
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGVP-N-TIK----KLA 211 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~~-~-~i~----~L~ 211 (327)
+.+.++.++.+....+......-.|.|..+-.+-..++.+.++++.+. ..|. ..|.+ +|.|+. | .+. .+.
T Consensus 106 ~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~G~--~~i~l~DT~G~~~P~~v~~lv~~l~ 182 (268)
T cd07940 106 KKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAI-EAGA--TTINIPDTVGYLTPEEFGELIKKLK 182 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHH-HcCC--CEEEECCCCCCCCHHHHHHHHHHHH
Confidence 456677776666554433222245777776667788888999999885 3454 46665 899972 3 333 333
Q ss_pred hcCCCcceeecccCCCCc
Q 043340 212 SYKLQSTLAIRSAGVNDQ 229 (327)
Q Consensus 212 ~~~~~v~lavSI~GvND~ 229 (327)
+.-.+..+.+++-+-||.
T Consensus 183 ~~~~~~~i~l~~H~Hn~~ 200 (268)
T cd07940 183 ENVPNIKVPISVHCHNDL 200 (268)
T ss_pred HhCCCCceeEEEEecCCc
Confidence 321111256677777765
No 227
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=33.18 E-value=4.7e+02 Score=25.53 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=45.8
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE-EcCCCCcccccc
Q 043340 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTS-IRQTRGLDASAA 297 (327)
Q Consensus 223 I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~-vR~~~G~di~aa 297 (327)
+-|+||.. .+.+-.++++.+-+..+---+.|||.... +...++++.+.+++.|+.+. .--+...|+..+
T Consensus 136 vTGvsD~~-~v~q~i~lik~~~Pnak~Igv~Y~p~E~n-----s~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a 205 (322)
T COG2984 136 VTGVSDLL-PVAQQIELIKALLPNAKSIGVLYNPGEAN-----SVSLVEELKKEARKAGLEVVEAAVTSVNDIPRA 205 (322)
T ss_pred eeecCCcc-hHHHHHHHHHHhCCCCeeEEEEeCCCCcc-----cHHHHHHHHHHHHHCCCEEEEEecCcccccHHH
Confidence 77899865 67777788887532232223678875432 55788999999999999974 333355555433
No 228
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=32.99 E-value=65 Score=30.90 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCcceeec--ccCCCCcHHHHHHHHHHHHhc
Q 043340 206 TIKKLASYKLQSTLAIR--SAGVNDQVEHAVELAELLHEW 243 (327)
Q Consensus 206 ~i~~L~~~~~~v~lavS--I~GvND~~e~a~~L~~~l~~l 243 (327)
.+++|.++|+++.+-|+ |||+|| ++++++..-+...
T Consensus 174 al~~l~eaGi~~~v~v~PIiP~~~d--~e~e~~l~~~~~a 211 (297)
T COG1533 174 ALKELSEAGIPVGLFVAPIIPGLND--EELERILEAAAEA 211 (297)
T ss_pred HHHHHHHCCCeEEEEEecccCCCCh--HHHHHHHHHHHHc
Confidence 36788888988888888 999999 6788777755553
No 229
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=32.64 E-value=2.5e+02 Score=26.83 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCcceeecc-cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC
Q 043340 206 TIKKLASYKLQSTLAIRS-AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258 (327)
Q Consensus 206 ~i~~L~~~~~~v~lavSI-~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~ 258 (327)
.|+.+.+.+..+.+...+ ++ ++.+++.++++++++++. ..+.+.|..+.+
T Consensus 154 ~I~~l~~~G~~v~v~~tv~~~--~n~~ei~~~~~~~~~lGv-~~i~i~p~~~~~ 204 (318)
T TIGR03470 154 AIREAKARGFRVTTNTTLFND--TDPEEVAEFFDYLTDLGV-DGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHCCCcEEEEEEEeCC--CCHHHHHHHHHHHHHcCC-CEEEEecCcccc
Confidence 456666666544443333 44 457889999999998873 467888877654
No 230
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=32.47 E-value=4.8e+02 Score=27.47 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeC---CCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcC
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM---GEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK 214 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~---GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~ 214 (327)
+.++..++++++..+.+ +.+++.|++--. |......+.+.++++.+++. |- .|.....++...-.-|+..-
T Consensus 74 ~~~~l~~i~~~i~~A~~--D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~s-gK---pVvA~~~~~~s~~YylAs~A 147 (584)
T TIGR00705 74 RAISLFDIVNAIRQAAD--DRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDS-GK---PVYAYGTNYSQGQYYLASFA 147 (584)
T ss_pred CCcCHHHHHHHHHHHhc--CCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhc-CC---eEEEEEccccchhhhhhhhC
Confidence 36788999999988765 478999998641 44455667788888888642 22 33332333322222222211
Q ss_pred CCcce----eecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC--CCCC--CCCcHHHHHHHHHHHH
Q 043340 215 LQSTL----AIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE--GSDY--QRPYKKAVLAFAGALE 278 (327)
Q Consensus 215 ~~v~l----avSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~--~~~~--~~p~~e~i~~f~~~L~ 278 (327)
-.+.+ .|.+.|+.-..- -+.++++.++ ..++++...+.- ..+| ...+++.-+.++..+.
T Consensus 148 D~I~~~p~G~v~~~G~~~~~~---~~k~~ldKlG--V~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~ 214 (584)
T TIGR00705 148 DEIILNPMGSVDLHGFYTETL---FYKGMLDKLG--VRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLG 214 (584)
T ss_pred CEEEECCCceEEeeceecccc---cHHHHHHHcC--CeEEEeeccccccccCcccCCCCCHHHHHHHHHHHH
Confidence 11111 233556543321 2556677766 577777655432 2344 3556665555555443
No 231
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=32.33 E-value=4.2e+02 Score=26.87 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=56.9
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcHH----H----HHHHHhcC----C---C-cceeecccCCCCcHHH-----HH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPN----T----IKKLASYK----L---Q-STLAIRSAGVNDQVEH-----AV 234 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~----i~~L~~~~----~---~-v~lavSI~GvND~~e~-----a~ 234 (327)
+.+.++++.+.+.+. .++-|.|-|.++.. . ++++.++. . + .-+.|+-||+..+... ++
T Consensus 78 ~~L~~ai~~~~~~~~-~p~~i~v~ttc~~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy~~a~~ 156 (461)
T TIGR02931 78 DRVEEAVDVLLTRYP-DVKVVPIITTCSTEIIGDDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITGYDVAVH 156 (461)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEECCchHHhhhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHHHHHHHH
Confidence 668888887754431 13356676666532 2 23332221 0 1 2356777777554322 33
Q ss_pred HHHHHHHhc-CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 235 ELAELLHEW-GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 235 ~L~~~l~~l-~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
.+++.+..- .....||||+- | .+..++++++++|++.|+.+.+.
T Consensus 157 ali~~~~~~~~~~~~VNlig~-------~--~~~~D~~elk~lL~~~Gl~v~~l 201 (461)
T TIGR02931 157 DFVKHFAKKDKPNDKINLITG-------W--VNPGDVKELKHLLEEMDIEANVL 201 (461)
T ss_pred HHHHHHccCCCCCCcEEEECC-------C--CChhhHHHHHHHHHHcCCceEEe
Confidence 334332211 11246999962 1 13577999999999999998765
No 232
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=31.88 E-value=78 Score=28.10 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCc
Q 043340 158 HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV 203 (327)
Q Consensus 158 ~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~ 203 (327)
..+-.|.+.| |.-+ +...+++++++ .+|+ .||||||+
T Consensus 107 gDVvvi~IAG-GdT~---PvTaaii~ya~-~rG~----~TisT~GV 143 (217)
T COG4015 107 GDVVVICIAG-GDTI---PVTAAIINYAK-ERGI----KTISTNGV 143 (217)
T ss_pred CCEEEEEecC-CCcc---hhHHHHHHHHH-HcCc----eEeecCce
Confidence 4678889999 8866 44677888885 4676 89999997
No 233
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=31.87 E-value=14 Score=36.52 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=25.4
Q ss_pred CCCcCCh---hhHHHHHHHhhhccCCCCccEEEEcCCcH
Q 043340 169 GEPMLNL---KSVLEAHRCLNKDVQIGQRMITISTVGVP 204 (327)
Q Consensus 169 GEPlln~---~~v~~~i~~l~~~~gi~~r~itisTnG~~ 204 (327)
|||+.++ ....+++..++ .+|+ +..++|++..
T Consensus 100 ge~~~~~~~~~~~~~l~~~lk-~lGf---~~v~et~~~a 134 (374)
T TIGR02512 100 GEEFGMPIGTDVTGKMVAALR-KLGF---DYVFDTNFAA 134 (374)
T ss_pred HHHhCCCccchHHHHHHHHHH-HcCC---CEEEECcHHH
Confidence 9999875 45678888886 5799 9999999764
No 234
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=31.07 E-value=4.4e+02 Score=24.53 Aligned_cols=133 Identities=15% Similarity=0.245 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhh-HHHHHHHhhhcc-CCCCccEEE-EcCCcH-------HHHHHHH
Q 043340 142 SHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKS-VLEAHRCLNKDV-QIGQRMITI-STVGVP-------NTIKKLA 211 (327)
Q Consensus 142 ~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~-v~~~i~~l~~~~-gi~~r~iti-sTnG~~-------~~i~~L~ 211 (327)
-+.++.++..+.. ..+.|.+ |-|++.+.+ -..+++.+++.+ .+....+.| ---|.. .-++-..
T Consensus 90 yEklvr~V~~~~~----dF~~lki---g~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~ 162 (265)
T COG4822 90 YEKLVREVNKYSN----DFKRLKI---GRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVL 162 (265)
T ss_pred HHHHHHHHHHHhh----hhheeec---CCceeechhhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHH
Confidence 3667777777654 3455555 889997643 344555555421 111223333 223431 1233333
Q ss_pred h-cCCCcceee-cccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCC-CCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 212 S-YKLQSTLAI-RSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQ-RPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 212 ~-~~~~v~lav-SI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~-~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
. .+.+ ++-| .+.|.-+ +..+.+.++.-+ ...|+|||+.-+.|..-. .-..+.=.....+|.++|+.|++-
T Consensus 163 ~~~~f~-~v~v~~ve~yP~----~d~vi~~l~~~~-~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~~ 235 (265)
T COG4822 163 DEYGFD-NVFVAAVEGYPL----VDTVIEYLRKNG-IKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEVY 235 (265)
T ss_pred HhcCCC-ceEEEEecCCCc----HHHHHHHHHHcC-CceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEEE
Confidence 3 2321 2222 2334322 455677777654 368999999977654311 111112247889999999998653
No 235
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.96 E-value=5.5e+02 Score=25.62 Aligned_cols=107 Identities=18% Similarity=0.300 Sum_probs=58.3
Q ss_pred eEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-------HH-HHHHHhc-----CCCcceeecccCCCC
Q 043340 162 NVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-------NT-IKKLASY-----KLQSTLAIRSAGVND 228 (327)
Q Consensus 162 ~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-------~~-i~~L~~~-----~~~v~lavSI~GvND 228 (327)
.+| +| || +.+.+.++.+.+.+. ++-|.|.|.... +. ++++.+. +.+ -+.++-+|+..
T Consensus 60 d~V-fG-g~-----~~L~~~i~~~~~~~~--p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~-vi~v~t~gf~g 129 (417)
T cd01966 60 STI-LG-GG-----ENLEEALDTLAERAK--PKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVP-VVYVSTPDFEG 129 (417)
T ss_pred cEE-EC-CH-----HHHHHHHHHHHHhcC--CCEEEEECCCcccccccCHHHHHHHHHhhccccCCCe-EEEecCCCCCC
Confidence 454 46 65 567777777654332 345666555432 22 3344333 222 35677777764
Q ss_pred cHHH-----HHHHHHHHHhc-----CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 229 QVEH-----AVELAELLHEW-----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 229 ~~e~-----a~~L~~~l~~l-----~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
+... ++.|++.+..- .....||||+-... ++.++.++.++|++.|+.+.+
T Consensus 130 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~--------~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 130 SLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHL--------TPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred cHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCC--------CHHHHHHHHHHHHHcCCceEE
Confidence 4322 33344333221 11346999961111 245789999999999999865
No 236
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=30.62 E-value=5e+02 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCC
Q 043340 268 KAVLAFAGALESHKITTSIRQTRG 291 (327)
Q Consensus 268 e~i~~f~~~L~~~gi~v~vR~~~G 291 (327)
.++.++.+.|++.|+.+...-..|
T Consensus 166 ~d~~el~~ll~~~G~~v~~~~~~~ 189 (399)
T cd00316 166 GDLRELKRLLEEMGIRVNALFDGG 189 (399)
T ss_pred hhHHHHHHHHHHcCCcEEEEcCCC
Confidence 455666666666677665554443
No 237
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.54 E-value=4.6e+02 Score=24.55 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHhcC-CcceEEEeeC-CC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKH-RVTNVVFMGM-GE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~-~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ . ++++|.+.|. || |.+..++=.++++...+
T Consensus 17 ~iD~~~~~~~i~~l~~---~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~ 65 (288)
T cd00954 17 EINEDVLRAIVDYLIE---KQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAE 65 (288)
T ss_pred CCCHHHHHHHHHHHHh---cCCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 4665555555555443 5 7899998884 77 66666665666665543
No 238
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=30.53 E-value=2.2e+02 Score=29.52 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=25.9
Q ss_pred ceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcc
Q 043340 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293 (327)
Q Consensus 247 ~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~d 293 (327)
..||||+-... ..++..+.++|++.|+.+...-..|..
T Consensus 203 ~~VNliG~~n~---------~gD~~eik~lLe~~Gl~v~~~~~gg~t 240 (513)
T TIGR01861 203 HVINYVGEYNI---------QGDQEVMVDYFQRMGIQVLSTFTGNGS 240 (513)
T ss_pred CeEEEeCCCCC---------ccCHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 46999863222 235778889999999998765544433
No 239
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=30.50 E-value=2.3e+02 Score=24.75 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=40.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 225 GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
|-..+-+-+++-++.|+.++....+.++.-|. +++++.+|.+..++.|+.|.|-
T Consensus 10 GS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHR---------TPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 10 GSKSDWDTMKKAAEILEEFGVPYEVRVVSAHR---------TPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred cCcchHHHHHHHHHHHHHcCCCeEEEEEeccC---------CHHHHHHHHHHHHHCCCeEEEe
Confidence 43444677888889999988656666655443 3478999999999999998774
No 240
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.23 E-value=2.8e+02 Score=28.65 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 268 KAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 268 e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
.++.++++.|+..|+.+...-..|.
T Consensus 180 ~Dl~eikrLL~~~Gi~vn~v~~~g~ 204 (513)
T CHL00076 180 HDCRELKRLLQDLGIEINQIIPEGG 204 (513)
T ss_pred chHHHHHHHHHHCCCeEEEEECCCC
Confidence 4567777777777777765544443
No 241
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=30.22 E-value=4.4e+02 Score=27.89 Aligned_cols=96 Identities=23% Similarity=0.205 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHh-cCCcceEEEeeCCCCcCChhhHHHHHHHhhhccC-----CCCccEEEEcCCcH-----H---
Q 043340 140 LSSHEIVGQVLAIEEIF-KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQ-----IGQRMITISTVGVP-----N--- 205 (327)
Q Consensus 140 lt~~EIv~qv~~~~~~~-~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~g-----i~~r~itisTnG~~-----~--- 205 (327)
-|++-+++-.+...+.+ ..+..+|+|+= ---|...++++-+.+.+.+. + +-|+.|+-.|.. .
T Consensus 180 ~tpegmVeSAle~~~i~e~~~f~diviS~---KsSnv~~mi~AyrlLa~~~d~eg~~Y-PLHLGVTEAG~g~~G~IKSav 255 (606)
T PRK00694 180 DTIEGMVYSALEYIEVCEKLDYRDVVFSM---KSSNPKVMVAAYRQLAKDLDARGWLY-PLHLGVTEAGSGTDGIIKSAV 255 (606)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHHHHHHHhhccCCCc-CceeccccCcCCCCceeHHHH
Confidence 37777777776665543 24678888865 34455556666666653222 3 238888877752 1
Q ss_pred HHHHHHhcCCCcceeecccCCCCcHHH---HHHHHHHHH
Q 043340 206 TIKKLASYKLQSTLAIRSAGVNDQVEH---AVELAELLH 241 (327)
Q Consensus 206 ~i~~L~~~~~~v~lavSI~GvND~~e~---a~~L~~~l~ 241 (327)
.|-.|+.+|++.++.||+.+ |-.++ +++|.+...
T Consensus 256 GIG~LL~dGIGDTIRVSLT~--dP~~Ev~va~~ll~~~~ 292 (606)
T PRK00694 256 GIGTLLSEGLGDTIRCSLTG--CPTNEIPVCISLLKHTT 292 (606)
T ss_pred HHHHHHHhCCCCeEEEECCC--ChHHHHHHHHHHHHHHH
Confidence 47889999999999999876 33333 445554443
No 242
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=30.20 E-value=5.1e+02 Score=24.99 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEe-eCCCCcCChhhHHHHHHHhhhc-cCCCCccEEEEcCC
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFM-GMGEPMLNLKSVLEAHRCLNKD-VQIGQRMITISTVG 202 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~-G~GEPlln~~~v~~~i~~l~~~-~gi~~r~itisTnG 202 (327)
=.+|++||.+.+....+. +..+-++..- .-|.|...++...+++..+++. -.+ -|.++|.+
T Consensus 24 lP~TP~qIA~~a~~aa~A-GAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~---vin~ttg~ 86 (298)
T COG3246 24 LPVTPDQIASDAIAAAKA-GAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDA---VINLTTGE 86 (298)
T ss_pred CCCCHHHHHHHHHHHHhc-CcceEEEEecCCCCCcccCHHHHHHHHHHHHccCCCe---EEEecccc
Confidence 358999999988876542 4556666665 4599999998888999999754 233 56677766
No 243
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=29.64 E-value=6.5e+02 Score=26.06 Aligned_cols=115 Identities=15% Similarity=0.057 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEeeCCCCc-CChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCCcceee
Q 043340 143 HEIVGQVLAIEEIFKHRVTNVVFMGMGEPM-LNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAI 221 (327)
Q Consensus 143 ~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl-ln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lav 221 (327)
++|++++....+ .+.+-|-+ | |++. -..+.+..+++.+++..++ .|.|+|-= ...++.-++.| ..+-.
T Consensus 165 ~~i~~~A~~~~~---~GADIIDI-G-~~st~p~~~~v~~~V~~l~~~~~~---pISIDT~~-~~v~eaAL~aG--AdiIN 233 (499)
T TIGR00284 165 DGIEGLAARMER---DGADMVAL-G-TGSFDDDPDVVKEKVKTALDALDS---PVIADTPT-LDELYEALKAG--ASGVI 233 (499)
T ss_pred HHHHHHHHHHHH---CCCCEEEE-C-CCcCCCcHHHHHHHHHHHHhhCCC---cEEEeCCC-HHHHHHHHHcC--CCEEE
Confidence 678887776654 34444444 6 5544 2445688899988754566 78998852 22345445554 34555
Q ss_pred cccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCC
Q 043340 222 RSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI 282 (327)
Q Consensus 222 SI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi 282 (327)
|+.|.|+ .++.++++..+ +.+-++|.+. .+..+.+++..+.+.+.|+
T Consensus 234 sVs~~~~-----d~~~~l~a~~g--~~vVlm~~~~-------~~~~~~l~~~ie~a~~~Gi 280 (499)
T TIGR00284 234 MPDVENA-----VELASEKKLPE--DAFVVVPGNQ-------PTNYEELAKAVKKLRTSGY 280 (499)
T ss_pred ECCccch-----hHHHHHHHHcC--CeEEEEcCCC-------CchHHHHHHHHHHHHHCCC
Confidence 6666442 24555555543 4566666321 1222556666666777777
No 244
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=29.27 E-value=5.7e+02 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=22.4
Q ss_pred eccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 253 PFNPIEGSDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 253 p~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
|=||.+. ..++++++++.++++++++.+.
T Consensus 172 P~NPTGa----v~~~~~l~~i~~~a~~~~i~ii 200 (393)
T COG0436 172 PNNPTGA----VYSKEELKAIVELAREHDIIII 200 (393)
T ss_pred CCCCcCc----CCCHHHHHHHHHHHHHcCeEEE
Confidence 5566553 3578999999999999998764
No 245
>smart00642 Aamy Alpha-amylase domain.
Probab=29.13 E-value=2.7e+02 Score=24.02 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCcceEEEEeccCCCC----------CCCCCC-----cHHHHHHHHHHHHhCCCeEEE
Q 043340 230 VEHAVELAELLHEWGRGHHVNLIPFNPIEG----------SDYQRP-----YKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 230 ~e~a~~L~~~l~~l~~~~~vnLIp~np~~~----------~~~~~p-----~~e~i~~f~~~L~~~gi~v~v 286 (327)
-+.+.+-...+++++ ...|.|.|..+... ..|..+ +.++++++.+.++++|+.|.+
T Consensus 18 ~~gi~~~l~yl~~lG-~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 18 LQGIIEKLDYLKDLG-VTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHHHCC-CCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 344444445788876 35677878765442 112222 358999999999999999853
No 246
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=28.76 E-value=6.3e+02 Score=25.62 Aligned_cols=106 Identities=10% Similarity=0.055 Sum_probs=54.2
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcHH----HH----HHHHhcCCC-cceeecccCCCCc-HHH-----HHHHH-HH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVPN----TI----KKLASYKLQ-STLAIRSAGVNDQ-VEH-----AVELA-EL 239 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~~----~i----~~L~~~~~~-v~lavSI~GvND~-~e~-----a~~L~-~~ 239 (327)
+.+.++++.+.+.+. .++-|.|.|+.+.. .+ +++.+...+ .-+.|+-||+.+. ... .+.+. ++
T Consensus 112 ~kL~~aI~~~~~~~~-~p~~I~V~tTC~~elIGDDi~~v~~~~~~~~~~~~vi~v~tpgf~g~s~~~G~~~a~~~~~~~~ 190 (461)
T TIGR01860 112 KQLEKSIHEAFDEFP-DIKRMIVYTTCPTALIGDDIKAVAKKVQKELPDVDIFTVECPGFAGVSQSKGHHVLNIGWINEK 190 (461)
T ss_pred HHHHHHHHHHHHhCC-CCCEEEEEccCchhhhcCCHHHHHHHHHHhcCCCcEEEEeCCCcCCcccchHHHHHHHHHHHHH
Confidence 566677776654431 12346666665431 23 333332111 2366777887752 221 11111 11
Q ss_pred HHhc----CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCC
Q 043340 240 LHEW----GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRG 291 (327)
Q Consensus 240 l~~l----~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G 291 (327)
+..+ .....||||+-. . ...++.++.++|++.|+.+...-..|
T Consensus 191 v~~~~~~~~~~~~VNiiG~~-------~--~~gd~~el~~lL~~~Gi~v~~~~~g~ 237 (461)
T TIGR01860 191 VGTLEPEITSEYTINVIGDY-------N--IQGDTQVLQKYWDKMGIQVIAHFTGN 237 (461)
T ss_pred hcccCCCCCCCCcEEEECCC-------C--CcccHHHHHHHHHHcCCcEEEEeCCC
Confidence 2111 112469998621 1 12357889999999999986544434
No 247
>PRK12435 ferrochelatase; Provisional
Probab=28.74 E-value=2e+02 Score=27.69 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=35.7
Q ss_pred CCCcCChhhHHHHHHHhhhccCCCCccEEEEcCC--c--------HHHHHHHHhc-CCCcceeecccCCCCcHHHHHHHH
Q 043340 169 GEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVG--V--------PNTIKKLASY-KLQSTLAIRSAGVNDQVEHAVELA 237 (327)
Q Consensus 169 GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG--~--------~~~i~~L~~~-~~~v~lavSI~GvND~~e~a~~L~ 237 (327)
|+|.. ..+.+.++.+.+.+|++.-.++..+-| - .+.+++|++. |..--+.+.+--+.|..|-+.+|.
T Consensus 192 GDpY~--~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eld 269 (311)
T PRK12435 192 GDPYP--DQLEETADLIAEQANVEHYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDND 269 (311)
T ss_pred CCCHH--HHHHHHHHHHHHHcCCCCCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHH
Confidence 77743 356666666655555544355555542 1 1246677665 543223334445566666666554
No 248
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=28.44 E-value=61 Score=24.75 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.4
Q ss_pred CCcEEEEEEecCCCeEEEEeec
Q 043340 81 DGTVKLLIKLEDNRLIETVGIP 102 (327)
Q Consensus 81 dgt~K~l~~l~dg~~iE~V~i~ 102 (327)
+|++|+.++|+||..++.-+..
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~ 23 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLG 23 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCC
Confidence 6899999999999988866544
No 249
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.42 E-value=3.2e+02 Score=22.08 Aligned_cols=78 Identities=26% Similarity=0.266 Sum_probs=38.6
Q ss_pred EEcCCc--HHHHHHHHhcCCCcceeecccCCCCc--HHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHH
Q 043340 198 ISTVGV--PNTIKKLASYKLQSTLAIRSAGVNDQ--VEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAF 273 (327)
Q Consensus 198 isTnG~--~~~i~~L~~~~~~v~lavSI~GvND~--~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f 273 (327)
++++|- ...+.+|.+.|.. --|.+..-++. .-....+.+..+.++. ..++ ||+. ...++++.+++|
T Consensus 9 ~~vs~Q~~~~d~~~la~~Gfk--tVInlRpd~E~~~qp~~~~~~~~a~~~Gl-~y~~-iPv~------~~~~~~~~v~~f 78 (110)
T PF04273_consen 9 LSVSGQPSPEDLAQLAAQGFK--TVINLRPDGEEPGQPSSAEEAAAAEALGL-QYVH-IPVD------GGAITEEDVEAF 78 (110)
T ss_dssp EEEECS--HHHHHHHHHCT----EEEE-S-TTSTTT-T-HHCHHHHHHHCT--EEEE-----------TTT--HHHHHHH
T ss_pred eEECCCCCHHHHHHHHHCCCc--EEEECCCCCCCCCCCCHHHHHHHHHHcCC-eEEE-eecC------CCCCCHHHHHHH
Confidence 445554 3468888887644 33333221111 1123445566667662 2333 4433 234689999999
Q ss_pred HHHHHhCCCeEE
Q 043340 274 AGALESHKITTS 285 (327)
Q Consensus 274 ~~~L~~~gi~v~ 285 (327)
.+.+....-+|.
T Consensus 79 ~~~l~~~~~Pvl 90 (110)
T PF04273_consen 79 ADALESLPKPVL 90 (110)
T ss_dssp HHHHHTTTTSEE
T ss_pred HHHHHhCCCCEE
Confidence 999997655543
No 250
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=28.41 E-value=5e+02 Score=24.33 Aligned_cols=46 Identities=15% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC----------hhhHHHHHHHhhh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN----------LKSVLEAHRCLNK 187 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln----------~~~v~~~i~~l~~ 187 (327)
|+.+..++...+..+.. .+++||.... |+|.-. +....++++.+++
T Consensus 80 rd~n~~~l~~~L~~~~~---~Gi~niL~l~-GD~~~~g~~~~~~~~~~~~~~~Li~~i~~ 135 (287)
T PF02219_consen 80 RDRNREALQSDLLGAHA---LGIRNILALT-GDPPKGGDHFAKPVFDFDYALDLIRLIRQ 135 (287)
T ss_dssp TTSBHHHHHHHHHHHHH---TT--EEEEES-S-TSTTSSS----TTS-SSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH---cCCCeEEEec-CCCCCCCccccCCCchhHHHHHHHHHHHH
Confidence 44556677777776653 4899999999 998644 2236777777764
No 251
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.08 E-value=4.6e+02 Score=25.53 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhCCCeEEEc
Q 043340 268 KAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 268 e~i~~f~~~L~~~gi~v~vR 287 (327)
.++.++.+.|++.|+.+...
T Consensus 158 ~d~~el~~lL~~~Gi~v~~~ 177 (398)
T PF00148_consen 158 GDLEELKRLLEELGIEVNAV 177 (398)
T ss_dssp HHHHHHHHHHHHTTEEEEEE
T ss_pred ccHHHHHHHHHHCCCceEEE
Confidence 55666666666666655433
No 252
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=27.88 E-value=3.5e+02 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=25.8
Q ss_pred cceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH
Q 043340 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN 205 (327)
Q Consensus 160 v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~ 205 (327)
+++-.++=.|||-+. +.+..+++.+++ ..+ .--+-||..-|
T Consensus 354 vrhcalslVgepi~y-p~in~f~k~lH~-k~i---ssflvtnaq~p 394 (601)
T KOG1160|consen 354 VRHCALSLVGEPIMY-PEINPFAKLLHQ-KLI---SSFLVTNAQFP 394 (601)
T ss_pred hhhheeeeecccccc-hhhhHHHHHHHh-ccc---hHHhcccccCh
Confidence 444444445899998 568889998864 344 33455776543
No 253
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=27.44 E-value=4.8e+02 Score=23.78 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-CcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhc--C
Q 043340 138 RNLSSHEIVGQVLAIEEIFKH-RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY--K 214 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~-~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~--~ 214 (327)
...+.+.+.+++....+.++. .++-+.+-....+......+.++++.+++. |. .+.|.+|+.+ .+.+.++... .
T Consensus 88 ~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~-G~-ir~iGvS~~~-~~~l~~~~~~~~~ 164 (285)
T cd06660 88 RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKE-GK-IRAIGVSNFS-AEQLEEALAAAGV 164 (285)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHc-CC-ccEEEeeCCC-HHHHHHHHHhhCC
Confidence 446788888888887776642 233333333222222245677777777643 54 4688998887 4456666554 1
Q ss_pred CCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 215 LQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 215 ~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
....+.+.+.-.+...+ ..+.++++.. .+.++.|.|..+
T Consensus 165 ~~~~~q~~~n~~~~~~~--~~~~~~~~~~----gi~v~~~~~l~~ 203 (285)
T cd06660 165 PPAVNQVEYNLLDRQAE--EELLPYCREH----GIGVIAYSPLAG 203 (285)
T ss_pred CceEEecccCcccCchH--HHHHHHHHHc----CcEEEEeccccC
Confidence 11112222222222222 1577777763 466778888753
No 254
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=27.40 E-value=6.6e+02 Score=25.43 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=55.4
Q ss_pred hhHHHHHHHhhhccCCCCccEEEEcCCcH----HHHHHHHhc----------CCC-cceeecccCCCCcHHH-----HHH
Q 043340 176 KSVLEAHRCLNKDVQIGQRMITISTVGVP----NTIKKLASY----------KLQ-STLAIRSAGVNDQVEH-----AVE 235 (327)
Q Consensus 176 ~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i~~L~~~----------~~~-v~lavSI~GvND~~e~-----a~~ 235 (327)
+.+.++++.+.+.+. .++-|.|.|..+. +.++.++.. +.+ .-+.++-||+..+... ++.
T Consensus 72 ~~L~~~I~~~~~~~~-~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~a 150 (454)
T cd01973 72 KRVEEGVLVLARRYP-DLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRS 150 (454)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHH
Confidence 567777777654331 1234666665542 223322211 001 2356777777655332 234
Q ss_pred HHHHHHhc-CCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 236 LAELLHEW-GRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 236 L~~~l~~l-~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
+++.+..- .....||||+- |. ++.++++++++|++.|+.+.+.
T Consensus 151 li~~~~~~~~~~~~VNii~~-------~~--~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 151 VVKTIAKKGAPSGKLNVFTG-------WV--NPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred HHHHhcccCCCCCcEEEECC-------CC--ChHHHHHHHHHHHHcCCCEEEe
Confidence 44433221 11246999962 11 2467999999999999998765
No 255
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=27.39 E-value=5.5e+02 Score=24.45 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCc---CC---h-hh---HHHHHHHhhhccCCCCccEEEEcCCcHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPM---LN---L-KS---VLEAHRCLNKDVQIGQRMITISTVGVPNTI 207 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPl---ln---~-~~---v~~~i~~l~~~~gi~~r~itisTnG~~~~i 207 (327)
+..+++++++++....+ .+.+-|-+ | ||.+ .. . +. +..+++.+++.+++ .|.|+|.= ...+
T Consensus 33 ~~~~~~~a~~~a~~~~~---~GAdIIDI-G-geSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~---~ISIDT~~-~~va 103 (282)
T PRK11613 33 THNSLIDAVKHANLMIN---AGATIIDV-G-GESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV---WISVDTSK-PEVI 103 (282)
T ss_pred CCCCHHHHHHHHHHHHH---CCCcEEEE-C-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---eEEEECCC-HHHH
Confidence 55788999998887754 34444444 5 4443 11 1 23 56677777655566 68999852 2345
Q ss_pred HHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEec
Q 043340 208 KKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPF 254 (327)
Q Consensus 208 ~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~ 254 (327)
+.-++.| +.+--+|.|++| ++.+ +.++..+ +.+-|++.
T Consensus 104 ~~AL~~G--adiINDI~g~~d-~~~~----~~~a~~~--~~vVlmh~ 141 (282)
T PRK11613 104 RESAKAG--AHIINDIRSLSE-PGAL----EAAAETG--LPVCLMHM 141 (282)
T ss_pred HHHHHcC--CCEEEECCCCCC-HHHH----HHHHHcC--CCEEEEcC
Confidence 5555554 456666778764 3333 3344433 45556654
No 256
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=27.35 E-value=6.6e+02 Score=25.41 Aligned_cols=103 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred EEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH--------HHHHHHhc-----CCCcceeecccCCCCcH
Q 043340 164 VFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN--------TIKKLASY-----KLQSTLAIRSAGVNDQV 230 (327)
Q Consensus 164 vf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~--------~i~~L~~~-----~~~v~lavSI~GvND~~ 230 (327)
+++| || +.+.++++.+.+.+.- +-|.|-|.++.. .++++.+. +.++ +.++-||+..+.
T Consensus 72 ~VfG-g~-----~~L~~aI~~~~~~~~P--~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pv-i~v~tpgF~g~~ 142 (455)
T PRK14476 72 TILG-GD-----ENVEEAILNICKKAKP--KIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPI-VYVSTPDFKGAL 142 (455)
T ss_pred eEeC-CH-----HHHHHHHHHHHHhhCC--CEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeE-EEecCCCCCCcH
Q ss_pred HHHHHHH--HHHHhcCCcce----------EEEE-eccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 231 EHAVELA--ELLHEWGRGHH----------VNLI-PFNPIEGSDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 231 e~a~~L~--~~l~~l~~~~~----------vnLI-p~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
..=.+.+ .+++. .... |||| .+|-.++ +++++.++|+..|+.+.+
T Consensus 143 ~~G~~~a~~al~~~--~~~~~~~~~~~~~~VNiIgg~~~~~~---------D~~elk~lL~~~Gl~v~~ 200 (455)
T PRK14476 143 EDGWAAAVEAIVEA--LVPPASSTGRRPRQVNVLPGSHLTPG---------DIEELREIIEAFGLEPII 200 (455)
T ss_pred HHHHHHHHHHHHHH--hcccccCCCCCCCcEEEECCCCCCcc---------cHHHHHHHHHHcCCceEE
No 257
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=27.23 E-value=81 Score=23.05 Aligned_cols=30 Identities=3% Similarity=-0.244 Sum_probs=25.5
Q ss_pred cCCCCCHHHHHHHHHHcCCCchHHHHHHHHH
Q 043340 8 PAWPFLYPAAQVICFFFFTCPSRGRQRAPWH 38 (327)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~ 38 (327)
...+.++++|.+.+.+.| +.-+..++..||
T Consensus 11 ~kTGk~~~~W~~~~~~~~-~~~k~~e~v~WL 40 (61)
T PF14117_consen 11 KKTGKTLDEWLALAREGG-PLTKHGEIVAWL 40 (61)
T ss_pred HHHCcCHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 346789999999999886 777899999998
No 258
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=27.16 E-value=1.8e+02 Score=24.89 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=58.1
Q ss_pred CcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCC-CcceeecccCCCCcHHHHHHHH
Q 043340 159 RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL-QSTLAIRSAGVNDQVEHAVELA 237 (327)
Q Consensus 159 ~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~-~v~lavSI~GvND~~e~a~~L~ 237 (327)
+++.|++.. -|=--+ +....+++... .-|+ ++.+-|. ...++.|-+... .-++-+ +-.+++++.+|+
T Consensus 25 ~~~~IiVvd-D~~A~D-~~~k~~l~ma~-P~gv---k~~i~sv--~~a~~~l~~~~~~~~~v~i----i~k~~~d~~~l~ 92 (151)
T PF03830_consen 25 NANRIIVVD-DEVAND-PFQKMILKMAA-PAGV---KLSIFSV--EEAIEKLKKPEYSKKRVLI----IVKSPEDALRLV 92 (151)
T ss_dssp TTSEEEEE--HHHHHS-HHHHHHHHHTS-HTTS---EEEEE-H--HHHHHHHCGGGGTTEEEEE----EESSHHHHHHHH
T ss_pred ccCEEEEEC-HHHhcC-HHHHHHHHHhh-cCCC---ceEEEEH--HHHHHHHHhcccCCceEEE----EECCHHHHHHHH
Confidence 466777665 222222 33444555543 2355 5555442 233444433220 111111 234688888888
Q ss_pred HHHHhcCCcceEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 238 ELLHEWGRGHHVNLIPFNPIEGS----DYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 238 ~~l~~l~~~~~vnLIp~np~~~~----~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
+---.+ ..+|+=+.+..++. +.-..++++++.|.++..+ |+.+++|..+..
T Consensus 93 ~~g~~i---~~iNvG~~~~~~g~~~i~~~v~l~~ee~~~l~~l~~~-Gv~i~~q~vP~~ 147 (151)
T PF03830_consen 93 EAGVKI---KEINVGNMSKKPGRKKITKNVYLSEEEIEALKELADK-GVEIEFQMVPDD 147 (151)
T ss_dssp HTT------SEEEEEEB---TTSEEESSSBEE-HHHHHHHHHHHHT-T-EEEE-SSTTS
T ss_pred hcCCCC---CEEEECCCCCCCccceeCCeEEECHHHHHHHHHHHHC-CCEEEEEECcCC
Confidence 743333 46887555544442 2334568999999877665 999999987654
No 259
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=27.15 E-value=54 Score=25.86 Aligned_cols=30 Identities=3% Similarity=-0.174 Sum_probs=21.5
Q ss_pred cCCCCCHHHHHHHHH---HcCCCchHHHHHHHH
Q 043340 8 PAWPFLYPAAQVICF---FFFTCPSRGRQRAPW 37 (327)
Q Consensus 8 ~~~~~~~~~l~~~~~---~~g~~~~ra~qi~~~ 37 (327)
..|+|+.+|+.+|.. ..|++.-|+..|-+|
T Consensus 57 ~rY~Ls~eEf~~W~~av~rhge~aLraT~~q~y 89 (90)
T PF06627_consen 57 RRYGLSEEEFESWQRAVDRHGENALRATRLQKY 89 (90)
T ss_dssp HCTTSSHHHHHHHHHHCCT--TTSS-TCHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 458999999999976 578888888777554
No 260
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=26.82 E-value=1.1e+02 Score=27.35 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 043340 120 VGCPLRCSFCATGKGGFSRNLSSHEIVG 147 (327)
Q Consensus 120 ~GCnl~C~fC~t~~~~~~r~lt~~EIv~ 147 (327)
.||.-.|..|..-.......++.+|+-.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 31 (235)
T PRK11161 4 GGCAIHCQDCSISQLCIPFTLNEHELDQ 31 (235)
T ss_pred CCCCCCcccccccccccccCCCHHHHHH
Confidence 5899999999976554445687766543
No 261
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=26.80 E-value=1.5e+02 Score=27.84 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=40.7
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG-SDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 224 ~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~-~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
|+.-++.+.+.+.++.++......... ..|.|... ..|+.+..+.++.++++.++.|+.+.
T Consensus 32 pc~ie~~~~~~~~A~~lk~~~~k~~r~-~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~ 93 (260)
T TIGR01361 32 PCSVESEEQIMETARFVKEAGAKILRG-GAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVV 93 (260)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHhccC-ceecCCCCCccccccHHHHHHHHHHHHHHhCCCEE
Confidence 445567788888888887643211111 22334332 35788889999999999999999863
No 262
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=26.42 E-value=3.6e+02 Score=24.80 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=27.9
Q ss_pred cccCCC--CcHHHHHHHHHHHHhcCCcceEEEEeccCCC
Q 043340 222 RSAGVN--DQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258 (327)
Q Consensus 222 SI~GvN--D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~ 258 (327)
.|.+|+ .+.+.++++++++.+.+....|-+||.+-.+
T Consensus 5 rleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~ 43 (243)
T PF10096_consen 5 RLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDP 43 (243)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCC
Confidence 344554 3578899999999987777889999976544
No 263
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=26.23 E-value=1.4e+02 Score=25.76 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHhcCCCcceeec-ccCCCCcHHHHHHHHHHHHhcC
Q 043340 207 IKKLASYKLQSTLAIR-SAGVNDQVEHAVELAELLHEWG 244 (327)
Q Consensus 207 i~~L~~~~~~v~lavS-I~GvND~~e~a~~L~~~l~~l~ 244 (327)
++.|.+.+..+.+.+- ++|.|+ ++++++++++++..+
T Consensus 146 i~~l~~~gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 146 LEILLRSGIPFELRTTVHRGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHHcCCCEEEEEEEeCCCCC-HHHHHHHHHHhccCC
Confidence 4455555544333322 689888 789999999998864
No 264
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=25.97 E-value=1.1e+02 Score=27.82 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC---CCCcCChhhHHHHHHHhhhccCCCCccEEEE
Q 043340 123 PLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM---GEPMLNLKSVLEAHRCLNKDVQIGQRMITIS 199 (327)
Q Consensus 123 nl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~---GEPlln~~~v~~~i~~l~~~~gi~~r~itis 199 (327)
.+.|--|. |+.|++ .+++.+.+.+..... .....|+++.|+ |-.++||.+..+.=-.+...|.+.+..|.-.
T Consensus 52 DfSYFG~l-GkrG~G--YnV~~L~~ff~~~Lg--~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~ 126 (211)
T COG2344 52 DFSYFGEL-GKRGYG--YNVKYLRDFFDDLLG--QDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK 126 (211)
T ss_pred hhHHHHhc-CCCCCC--ccHHHHHHHHHHHhC--CCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc
Confidence 44443332 344444 556777776665542 246789999996 4566666543211111111233333333334
Q ss_pred cCCc----HHHHHHHHhcCCCcceee-cccCCCCcHHHHHHHHHHHHhcCCcceEEEEecc
Q 043340 200 TVGV----PNTIKKLASYKLQSTLAI-RSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 200 TnG~----~~~i~~L~~~~~~v~lav-SI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
+.++ .+.+++..+.. ++.+++ .+| .++|.+.++.|-..+....+|.-|.+
T Consensus 127 ~~~v~V~~~d~le~~v~~~-dv~iaiLtVP-----a~~AQ~vad~Lv~aGVkGIlNFtPv~ 181 (211)
T COG2344 127 IGDVPVYDLDDLEKFVKKN-DVEIAILTVP-----AEHAQEVADRLVKAGVKGILNFTPVR 181 (211)
T ss_pred cCCeeeechHHHHHHHHhc-CccEEEEEcc-----HHHHHHHHHHHHHcCCceEEeccceE
Confidence 4443 23455555442 444443 243 46788888888665544556655544
No 265
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=25.72 E-value=88 Score=30.52 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCcCChhhHHHHHHHhhhccCC
Q 043340 161 TNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191 (327)
Q Consensus 161 ~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi 191 (327)
.++++.|.|+|++..+.+.++++.+++ .||
T Consensus 55 G~L~i~G~GDP~L~~~~L~~la~~l~~-~Gi 84 (345)
T TIGR00666 55 GNLVLRFGGDPTLKRQDIRNLVATLKK-SGV 84 (345)
T ss_pred ccEEEEeecCCCcCHHHHHHHHHHHHH-cCC
Confidence 589999999999999999999999864 576
No 266
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.63 E-value=4e+02 Score=26.25 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc--HHHHHHHHh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV--PNTIKKLAS 212 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~--~~~i~~L~~ 212 (327)
+.|.+|+++.+....++....--.|.|..+-..-.+++++.++++.+.+. +...|.+ +|+|. +..+.++..
T Consensus 108 ~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~---Ga~~I~l~DT~G~~~P~~v~~lv~ 181 (378)
T PRK11858 108 KKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA---GADRVRFCDTVGILDPFTMYELVK 181 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC---CCCEEEEeccCCCCCHHHHHHHHH
No 267
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.54 E-value=1.7e+02 Score=22.47 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEecCCCeEEEEe
Q 043340 56 SFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVG 100 (327)
Q Consensus 56 ~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE~V~ 100 (327)
++.++|++.|..+.............++.-+.++=+||+.||-+.
T Consensus 80 ~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 80 ALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 455667776544332111100011234566888889999999664
No 268
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.28 E-value=5.9e+02 Score=23.75 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|.+.| .|| +.+..++=.++++.+.+
T Consensus 18 ~iD~~~l~~~i~~l~~---~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~ 65 (292)
T PRK03170 18 SVDFAALRKLVDYLIA---NGTDGLVVVGTTGESPTLTHEEHEELIRAVVE 65 (292)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECCcCCccccCCHHHHHHHHHHHHH
Confidence 4666666666655543 5899999887 376 45566666666665544
No 269
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.27 E-value=3.9e+02 Score=27.47 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV 203 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~ 203 (327)
-+.+.+|+++.+....++.......|.|..+-.+-.+++++.++++.+.+ .|. ..|.+ +|+|+
T Consensus 105 l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~-~Ga--~~i~l~DTvG~ 168 (488)
T PRK09389 105 LKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE-AGA--DRICFCDTVGI 168 (488)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh-CCC--CEEEEecCCCC
Confidence 35778888888876655443233456666655566788899999988853 454 45665 89997
No 270
>PF13223 DUF4031: Protein of unknown function (DUF4031)
Probab=23.99 E-value=1.7e+02 Score=22.79 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=35.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcC
Q 043340 1 MRWCFLAPAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAG 65 (327)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~ 65 (327)
|+||-| ++=+++||-++...+|.++ +|+-.+. . -+=-++|.+.|+..-+.|
T Consensus 13 ~~w~HL---~aDt~~ELHafA~riGv~r-------r~fq~~~---~-~~HYDi~~~~r~~Av~~G 63 (83)
T PF13223_consen 13 RLWSHL---VADTLDELHAFAARIGVPR-------RWFQRGA---S-GDHYDIPESRRAAAVAAG 63 (83)
T ss_pred cEeeee---ccCCHHHHHHHHHHcCCCH-------HHHcCCC---C-CCCccCCHHHHHHHHHcC
Confidence 567754 5566999999999999995 3443322 1 122369999999877664
No 271
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=23.92 E-value=5.8e+02 Score=25.26 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=57.4
Q ss_pred CcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHH------H--------HHHHhcCCCcceeeccc
Q 043340 159 RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNT------I--------KKLASYKLQSTLAIRSA 224 (327)
Q Consensus 159 ~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~------i--------~~L~~~~~~v~lavSI~ 224 (327)
...++.|.|+|-|-+...-+ +.+ +.+ -.++.-|+.+. + +.+....+++-+.|+-|
T Consensus 24 ~~p~~~~~GvGG~~M~~~G~----~~l---~d~----~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~p 92 (373)
T PF02684_consen 24 RDPDIEFYGVGGPRMQAAGV----ESL---FDM----EELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILIDYP 92 (373)
T ss_pred hCCCcEEEEEechHHHhCCC----cee---cch----HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34589999999887662111 000 011 12345565321 1 12223456677778899
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHH-----------HHhCCCeEE
Q 043340 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGA-----------LESHKITTS 285 (327)
Q Consensus 225 GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~-----------L~~~gi~v~ 285 (327)
|+|= .+++.++..+. ++.++-|-+.--=-|++-....+.++.+. .+++|++++
T Consensus 93 gFNl------rlak~lk~~~~--~~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifPFE~~~y~~~g~~~~ 156 (373)
T PF02684_consen 93 GFNL------RLAKKLKKRGI--PIKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFPFEPEFYKKHGVPVT 156 (373)
T ss_pred CccH------HHHHHHHHhCC--CceEEEEECCceeeeCccHHHHHHHHHhheeECCcccHHHHhccCCCeE
Confidence 9983 67888887652 33344444421112455445555555433 356788764
No 272
>PF07325 Curto_V2: Curtovirus V2 protein; InterPro: IPR009931 This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process [].
Probab=23.63 E-value=1.1e+02 Score=24.99 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=37.4
Q ss_pred ccccc---ccCCCCCHHHHHHHHHH---------cCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q 043340 2 RWCFL---APAWPFLYPAAQVICFF---------FFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFR 58 (327)
Q Consensus 2 ~~~~~---~~~~~~~~~~l~~~~~~---------~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r 58 (327)
+||.| ..+-+||++|=+.+|.- +.-.=-|---+|.-|||+.+.+.-++-...|+-+-
T Consensus 29 kwCilGi~~eie~LtlEeGE~FLqFQKevKKLLk~k~sF~rKc~LYeeIYKkYv~~~seek~~~~~~~~ 97 (126)
T PF07325_consen 29 KWCILGIHPEIEPLTLEEGEVFLQFQKEVKKLLKRKCSFKRKCALYEEIYKKYVSDVSEEKGEVSKCVA 97 (126)
T ss_pred hhheecccccccccchhhhHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHccCcchhccccchhhh
Confidence 69987 56788999986666542 12222466789999999998833344444555444
No 273
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=23.42 E-value=5.9e+02 Score=23.45 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=58.6
Q ss_pred cceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH----HHHHHHHhcCCCcceeecccCCCCcHHHHHH
Q 043340 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP----NTIKKLASYKLQSTLAIRSAGVNDQVEHAVE 235 (327)
Q Consensus 160 v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i~~L~~~~~~v~lavSI~GvND~~e~a~~ 235 (327)
.-+++|.| |=.+.. ...++.+.+.++ | .+..-..+.... ..+.++. . ...+.+|+.+. +++++.+
T Consensus 16 ~~~~~~lg-g~~~d~--~t~~a~~~~~~r-g--r~ef~~~~e~~~~~i~~e~~~~~-~--~~~vivnv~~~--~~ee~~~ 84 (231)
T TIGR00736 16 LFAIVTLG-GYNADR--ATYKASRDIEKR-G--RKEFSFNLEEFNSYIIEQIKKAE-S--RALVSVNVRFV--DLEEAYD 84 (231)
T ss_pred CcCEEEEC-CccCCH--HHHHHHHHHHHc-C--CcccCcCcccHHHHHHHHHHHHh-h--cCCEEEEEecC--CHHHHHH
Confidence 35788888 877665 244455444321 2 112223332322 2344442 2 23577777663 4677777
Q ss_pred HHHHHHhcCCcceEEEEeccC---CC-----C-CCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCC
Q 043340 236 LAELLHEWGRGHHVNLIPFNP---IE-----G-SDYQRPYKKAVLAFAGALESHKITTSIRQTRG 291 (327)
Q Consensus 236 L~~~l~~l~~~~~vnLIp~np---~~-----~-~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G 291 (327)
+++.+.. .+..|.+|- .+ + ...---+++.+.++.+.+++.+++|++.-+.|
T Consensus 85 ~a~~v~~-----~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~ 144 (231)
T TIGR00736 85 VLLTIAE-----HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN 144 (231)
T ss_pred HHHHHhc-----CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 7777654 122333342 11 0 00111245667777777776677776555554
No 274
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.34 E-value=4.7e+02 Score=25.56 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc--HHHHHHHHh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV--PNTIKKLAS 212 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~--~~~i~~L~~ 212 (327)
+.+.+|+++.+....++....-..|.|.-+-.+-..++++.++++.+.+. +...|.+ +|+|. +..+.++..
T Consensus 105 ~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~---Ga~~i~l~DT~G~~~P~~v~~lv~ 178 (365)
T TIGR02660 105 RKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA---GADRFRFADTVGILDPFSTYELVR 178 (365)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc---CcCEEEEcccCCCCCHHHHHHHHH
No 275
>PTZ00413 lipoate synthase; Provisional
Probab=23.17 E-value=2.7e+02 Score=27.99 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=39.3
Q ss_pred CcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH----H-H-------HHHHHhcCCCcceeecccCCCCcHHHHHHHH
Q 043340 171 PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP----N-T-------IKKLASYKLQSTLAIRSAGVNDQVEHAVELA 237 (327)
Q Consensus 171 Plln~~~v~~~i~~l~~~~gi~~r~itisTnG~~----~-~-------i~~L~~~~~~v~lavSI~GvND~~e~a~~L~ 237 (327)
|++.++.+.+..+.+. .+|+ +..|-|+|.- + . ++.+-+...++.+.++++.+..+.+.++.|.
T Consensus 175 ~~lD~eEp~~vA~av~-~~Gl---~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~ 249 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVA-EMGV---DYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLA 249 (398)
T ss_pred CCCCHHHHHHHHHHHH-HcCC---CEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHH
Confidence 6667788888888774 5688 4556677631 1 1 3333333456778888887755555555444
No 276
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.85 E-value=4.4e+02 Score=23.59 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc-HH-HH----HHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV-PN-TI----KKL 210 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~-~~-~i----~~L 210 (327)
.+.+.+++++.+....+.....-..+.|..+-.+-..++.+.++++.+.+ .|. ..|.+ +|.|+ .| .+ ..+
T Consensus 99 ~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~i~l~Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 99 LNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAE-AGA--DIIYLADTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHH-HT---SEEEEEETTS-S-HHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHH-cCC--eEEEeeCccCCcCHHHHHHHHHHH
Confidence 45677888887766655432233445666666666677889999998864 455 35665 69997 23 33 344
Q ss_pred HhcCCCcceeecccCCCCc-HHHHHHHHHHHHh
Q 043340 211 ASYKLQSTLAIRSAGVNDQ-VEHAVELAELLHE 242 (327)
Q Consensus 211 ~~~~~~v~lavSI~GvND~-~e~a~~L~~~l~~ 242 (327)
.+...+ +.+.+-.-||. ..-+..++.+-.+
T Consensus 176 ~~~~~~--~~l~~H~Hnd~Gla~An~laA~~aG 206 (237)
T PF00682_consen 176 REALPD--IPLGFHAHNDLGLAVANALAALEAG 206 (237)
T ss_dssp HHHSTT--SEEEEEEBBTTS-HHHHHHHHHHTT
T ss_pred HHhccC--CeEEEEecCCccchhHHHHHHHHcC
Confidence 333222 55555555554 2334444444444
No 277
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=22.73 E-value=1.1e+03 Score=26.34 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred ceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHH--------HHHHHHhcCCCcceeecccCCCCcHH-
Q 043340 161 TNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPN--------TIKKLASYKLQSTLAIRSAGVNDQVE- 231 (327)
Q Consensus 161 ~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~--------~i~~L~~~~~~v~lavSI~GvND~~e- 231 (327)
..+||-| -+.+.++|+.+.+.+ .++-|.|.|..+.. .++++.+..--.-+.|+-||+..+..
T Consensus 90 ~diVfGG-------~~kL~~aI~~~~~~~--~P~~I~V~tTC~~elIGDDi~~v~~~~~~~~~~pvi~v~tpGF~gs~~~ 160 (917)
T PRK14477 90 NDVIFGG-------EKKLYRAILELAERY--QPKAVFVYATCVTALTGDDVEAVCKAAAEKVGIPVIPVNTPGFIGDKNI 160 (917)
T ss_pred CceeeCc-------HHHHHHHHHHHHHhc--CCCEEEEECCchHHHhccCHHHHHHHHHHhhCCcEEEEECCCccCchhh
Q ss_pred ----HHHHHHHHHHhcCCc-----ceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcccc
Q 043340 232 ----HAVELAELLHEWGRG-----HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGLDAS 295 (327)
Q Consensus 232 ----~a~~L~~~l~~l~~~-----~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di~ 295 (327)
-.+.+.+.+.+.... ..||||+-....+ ++.++.++|++.|+.+...-+.+..+.
T Consensus 161 G~~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~~g---------d~~elk~lL~~~Gi~v~~~~~g~~t~e 224 (917)
T PRK14477 161 GNRLAGEALLKHVIGTAEPEVTTPYDINLIGEYNIAG---------DLWGMLPLFDRLGIRVLSCISGDAKFE 224 (917)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCCcc---------hHHHHHHHHHHcCCeEEEEcCCCCCHH
No 278
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=22.53 E-value=2.2e+02 Score=26.21 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=52.4
Q ss_pred EEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCcceEEE
Q 043340 88 IKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCS--FCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVF 165 (327)
Q Consensus 88 ~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~--fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf 165 (327)
|-+.+-+.+-+..+|- .+..+.-+.-.+|...|. +|.++.. +.=|+.|+..+.... +.+...|+.
T Consensus 15 f~l~~~~q~~~~~~~~------~~fa~mr~~rp~~~pac~ea~~atPai---aaG~~~el~r~~~~~----dgr~l~VvV 81 (245)
T COG3904 15 FVLPAQAQEQSLDIPP------MRFAVMRSNRPGCEPACPEAISATPAI---AAGTPAELKRTLKTL----DGRQLPVVV 81 (245)
T ss_pred hccHhhcCcccccCCC------cccceeeccCCCccchhHHHhcCCCcc---cCCCHHHHHHhhhhc----cCceeeEEE
Confidence 4455555555555552 357777777889999995 6777643 233556776655443 345667777
Q ss_pred eeCCCCcCChhhHHHHHHHhh
Q 043340 166 MGMGEPMLNLKSVLEAHRCLN 186 (327)
Q Consensus 166 ~G~GEPlln~~~v~~~i~~l~ 186 (327)
.+ |..|-|....+-+.++
T Consensus 82 se---~~a~~da~sal~~lir 99 (245)
T COG3904 82 SE---PGANVDAASALGRLIR 99 (245)
T ss_pred cC---CCCCccHHHHHHHHHh
Confidence 55 7777776666666664
No 279
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=22.46 E-value=94 Score=25.56 Aligned_cols=54 Identities=13% Similarity=0.045 Sum_probs=37.5
Q ss_pred cCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCC---CHHHHHHHHhc
Q 043340 8 PAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPV---PQSFRNDLQEA 64 (327)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l---~~~~r~~l~~~ 64 (327)
++...+.++|.. --|.-+-+|+.|++|.-.++-+.++++..++ ++...++|.+.
T Consensus 61 niNtA~~~eL~~---lpGIG~~~A~~Ii~~R~~~g~f~s~eeL~~V~GIg~k~~~~i~~~ 117 (120)
T TIGR01259 61 NINAASLEELQA---LPGIGPAKAKAIIEYREENGAFKSVDDLTKVSGIGEKSLEKLKDY 117 (120)
T ss_pred eCCcCCHHHHhc---CCCCCHHHHHHHHHHHHhcCCcCCHHHHHcCCCCCHHHHHHHHhc
Confidence 455566666543 3677778999999998776654477776664 57777777664
No 280
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=22.31 E-value=7.3e+02 Score=24.16 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=60.7
Q ss_pred ceEEEeeC--CCCcCChhhHHHHHHHhhhccCCCCccE---------EEEcCCcH-HHHH-HHHhcCCCcceeec-ccCC
Q 043340 161 TNVVFMGM--GEPMLNLKSVLEAHRCLNKDVQIGQRMI---------TISTVGVP-NTIK-KLASYKLQSTLAIR-SAGV 226 (327)
Q Consensus 161 ~~Ivf~G~--GEPlln~~~v~~~i~~l~~~~gi~~r~i---------tisTnG~~-~~i~-~L~~~~~~v~lavS-I~Gv 226 (327)
+..|+.|| |+|++. ++++.+++ .|+ ++| +.+|.|.. ..+. .+.+.+ ..+.++ |+..
T Consensus 90 ~~~V~~amry~~P~i~-----~~v~~l~~-~gv--~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~~I~~~ 159 (320)
T COG0276 90 DFKVYLAMRYGPPFIE-----EAVEELKK-DGV--ERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKISTIPDY 159 (320)
T ss_pred CccEEEeecCCCCcHH-----HHHHHHHH-cCC--CeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceEEecCc
Confidence 45556564 999876 35555543 244 233 23555543 3333 333332 346666 8888
Q ss_pred CCcHHHHHHHHHHHHh----cCCcceEEEEeccCCCCCC--CCCCcHHHHHHHHHHHH-hCC
Q 043340 227 NDQVEHAVELAELLHE----WGRGHHVNLIPFNPIEGSD--YQRPYKKAVLAFAGALE-SHK 281 (327)
Q Consensus 227 ND~~e~a~~L~~~l~~----l~~~~~vnLIp~np~~~~~--~~~p~~e~i~~f~~~L~-~~g 281 (327)
-|++.-+..+++.++. .+....+-|+-+|-.+... ...|-.+++++-.+.+. +.|
T Consensus 160 ~~~p~yI~a~a~~I~~~~~~~~~~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~lg 221 (320)
T COG0276 160 YDEPLYIEALADSIREKLAKHPRDDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALG 221 (320)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHHcC
Confidence 8888888888877753 2211234456677665432 23355666665555543 345
No 281
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.01 E-value=1.3e+02 Score=23.72 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=44.2
Q ss_pred cceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH----HHHHHHHhcCCCcceeecccCCCCcHHHHHH
Q 043340 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP----NTIKKLASYKLQSTLAIRSAGVNDQVEHAVE 235 (327)
Q Consensus 160 v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i~~L~~~~~~v~lavSI~GvND~~e~a~~ 235 (327)
++++...| ++|+- ...++++.+++ .|. ++.+-||... ...++|...|++ + +-..+-- -...
T Consensus 5 ~dGvl~~g-~~~ip---ga~e~l~~L~~-~g~---~~~~lTNns~~s~~~~~~~L~~~Gi~--~--~~~~i~t---s~~~ 69 (101)
T PF13344_consen 5 LDGVLYNG-NEPIP---GAVEALDALRE-RGK---PVVFLTNNSSRSREEYAKKLKKLGIP--V--DEDEIIT---SGMA 69 (101)
T ss_dssp STTTSEET-TEE-T---THHHHHHHHHH-TTS---EEEEEES-SSS-HHHHHHHHHHTTTT------GGGEEE---HHHH
T ss_pred CccEeEeC-CCcCc---CHHHHHHHHHH-cCC---CEEEEeCCCCCCHHHHHHHHHhcCcC--C--CcCEEEC---hHHH
Confidence 45666778 88864 46788888864 476 7888888762 246777666543 2 2112211 1455
Q ss_pred HHHHHHhcCCcceEEEE
Q 043340 236 LAELLHEWGRGHHVNLI 252 (327)
Q Consensus 236 L~~~l~~l~~~~~vnLI 252 (327)
++++++......+|-++
T Consensus 70 ~~~~l~~~~~~~~v~vl 86 (101)
T PF13344_consen 70 AAEYLKEHKGGKKVYVL 86 (101)
T ss_dssp HHHHHHHHTTSSEEEEE
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 66777663223455554
No 282
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.62 E-value=6.9e+02 Score=23.56 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=67.9
Q ss_pred cceEEEe-eCCCCcCCh---hhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcC-------CCcceeecccCCCC
Q 043340 160 VTNVVFM-GMGEPMLNL---KSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK-------LQSTLAIRSAGVND 228 (327)
Q Consensus 160 v~~Ivf~-G~GEPlln~---~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~-------~~v~lavSI~GvND 228 (327)
-...||+ .|++.|++- +.+.++.+.++..... ..-+-|== ...+.++.+.. ..+.+.+|+..
T Consensus 77 ~~~~VFv~smSDlF~~~vpdew~~~vf~~m~~~p~h---~f~~LTKR-p~R~~~~l~~~~~~~~~~~NvwlGvTven--- 149 (261)
T PF07505_consen 77 KPRRVFVCSMSDLFHEEVPDEWRDEVFAVMRARPQH---TFQFLTKR-PERMREYLPSDWGDGDWPPNVWLGVTVEN--- 149 (261)
T ss_pred CCCEEEEecchhhcCcCCCHHHHHHHHHHHHhCCCe---EEEEeeCC-HHHHHHhccccccccCCCCceEEEEEEEc---
Confidence 3455554 478888653 4677777777543333 44444421 12233333211 24667777543
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCC----------------------CCCCCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEG----------------------SDYQRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~----------------------~~~~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
.+.+.+=...|..++ .++..|-+.|.-+ ..-++..++=+..+++...++|+++..
T Consensus 150 -Q~~ad~Rip~L~~~p--a~~rflS~EPLLg~i~l~~~~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFff 226 (261)
T PF07505_consen 150 -QKRADERIPILLETP--AKVRFLSCEPLLGPIDLSKLDLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFF 226 (261)
T ss_pred -hHHHHHhHHHHHhCC--ccEEEEEeccccCCcCcccccCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEE
Confidence 233423333444543 4566665555311 123566778899999999999999988
Q ss_pred cCCC
Q 043340 287 RQTR 290 (327)
Q Consensus 287 R~~~ 290 (327)
.+.-
T Consensus 227 KQwG 230 (261)
T PF07505_consen 227 KQWG 230 (261)
T ss_pred EeCC
Confidence 7654
No 283
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=21.49 E-value=1.5e+02 Score=20.52 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEec-CCCeEE
Q 043340 51 RPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLE-DNRLIE 97 (327)
Q Consensus 51 ~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~-dg~~iE 97 (327)
+.||...+..+.++ |.-....-..+....+| ..|-+++. +|...|
T Consensus 6 ~~lP~~v~~~i~~~-yp~~~i~~v~~~~~~~~-~~Y~v~l~~~~~~~~ 51 (61)
T PF11396_consen 6 SELPAAVKNAIKKN-YPGAKIKEVEKETDPGG-KYYEVELKKGGNEYE 51 (61)
T ss_dssp GGS-HHHHHHHHHH-STTSEEEEEEEEEETTE-EEEEEEETETTTSEE
T ss_pred HHCCHHHHHHHHHH-CCCCeEEEEEEEEcCCC-CEEEEEEEEeCCeEE
Confidence 57999999999999 76655444444444455 77777777 444444
No 284
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=21.48 E-value=5.3e+02 Score=24.03 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC---CCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCcH-H-HHH----
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM---GEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGVP-N-TIK---- 208 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~---GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~~-~-~i~---- 208 (327)
+.+.++.++.+....++....--.|.+..| --+-..++.+.++++.+.+ .|. ..|.+ +|.|.. | .+.
T Consensus 111 ~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~-~g~--~~i~l~DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 111 GTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAE-AGA--DWLVLCDTNGGTLPHEIAEIVK 187 (273)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHh-CCC--CEEEEecCCCCCCHHHHHHHHH
Confidence 456777777776654443211123433222 1134567888888888753 454 45664 799973 3 343
Q ss_pred HHHhcCCCcceeecccCCCCc-HHHHHHHHHHHHh
Q 043340 209 KLASYKLQSTLAIRSAGVNDQ-VEHAVELAELLHE 242 (327)
Q Consensus 209 ~L~~~~~~v~lavSI~GvND~-~e~a~~L~~~l~~ 242 (327)
.+.+. .+ .+.+++-.-||- ..-+..++.+-.+
T Consensus 188 ~l~~~-~~-~~~l~~H~Hnd~Gla~An~laA~~aG 220 (273)
T cd07941 188 EVRER-LP-GVPLGIHAHNDSGLAVANSLAAVEAG 220 (273)
T ss_pred HHHHh-CC-CCeeEEEecCCCCcHHHHHHHHHHcC
Confidence 33333 22 245666666664 2233444444444
No 285
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=21.46 E-value=5.7e+02 Score=22.82 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCC------cC----ChhhHHHHHHHhhh-ccCCCCccEEEEcCCcHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP------ML----NLKSVLEAHRCLNK-DVQIGQRMITISTVGVPNT 206 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEP------ll----n~~~v~~~i~~l~~-~~gi~~r~itisTnG~~~~ 206 (327)
+..+.++.++++....+ .+-+.|-+ | ||+ .. ..+.+..+++.+.+ ..++ .+.|+|.= ...
T Consensus 14 ~~~~~~~a~~~a~~~~~---~GAdiIDI-g-~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~---plSIDT~~-~~v 84 (210)
T PF00809_consen 14 RKFSEDEAVKRAREQVE---AGADIIDI-G-AESTRPGATPVSEEEEMERLVPVLQAIREENPDV---PLSIDTFN-PEV 84 (210)
T ss_dssp CHHHHHHHHHHHHHHHH---TT-SEEEE-E-SSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS---EEEEEESS-HHH
T ss_pred cccCHHHHHHHHHHHHH---hcCCEEEe-c-ccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe---EEEEECCC-HHH
Confidence 34555667666555443 45566665 4 333 11 22346666666653 3466 79999952 233
Q ss_pred HHHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEecc
Q 043340 207 IKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 207 i~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
++.-++.+ ..+-.++-|..+. .++.++++..+ +.+-+++..
T Consensus 85 ~~~aL~~g--~~~ind~~~~~~~----~~~~~l~a~~~--~~vV~m~~~ 125 (210)
T PF00809_consen 85 AEAALKAG--ADIINDISGFEDD----PEMLPLAAEYG--APVVLMHSD 125 (210)
T ss_dssp HHHHHHHT--SSEEEETTTTSSS----TTHHHHHHHHT--SEEEEESES
T ss_pred HHHHHHcC--cceEEeccccccc----chhhhhhhcCC--CEEEEEecc
Confidence 55545553 4566666666532 35666666755 566666655
No 286
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=21.25 E-value=7.3e+02 Score=23.73 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=17.9
Q ss_pred CCcHHHHHHHHHHHHhCCCeEE
Q 043340 264 RPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 264 ~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
..+.++++++.++++++++.+.
T Consensus 180 ~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 180 VAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred cCCHHHHHHHHHHHHHcCEEEE
Confidence 4578899999999999887654
No 287
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.19 E-value=2.6e+02 Score=21.88 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCCC-Ccee-eEEe-cCCCcEEEEEEecCCCeEEEEeecc
Q 043340 55 QSFRNDLQEAGWTVGR-LPIF-RTVT-AADGTVKLLIKLEDNRLIETVGIPV 103 (327)
Q Consensus 55 ~~~r~~l~~~~~~~~~-~~~~-~~~~-s~dgt~K~l~~l~dg~~iE~V~i~~ 103 (327)
.++.++|.+.|..+.. +... ..+. ..+|..-+.|+=+||+.||-+.-|+
T Consensus 72 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 123 (123)
T cd08351 72 DRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRPY 123 (123)
T ss_pred HHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEeccC
Confidence 4567777777654422 1111 1111 2367888999999999999887653
No 288
>PHA02754 hypothetical protein; Provisional
Probab=21.13 E-value=1.1e+02 Score=22.22 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=28.1
Q ss_pred CHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEecCCCeEEE
Q 043340 54 PQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIET 98 (327)
Q Consensus 54 ~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE~ 98 (327)
=+++|+.|.+.|..+.+.+.. .+|.| |.++-+.|+-.||-
T Consensus 20 MRelkD~LSe~GiYi~RIkai--~~SGd---kIVVi~aD~I~i~l 59 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAI--TTSGD---KIVVITADAIKIEL 59 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEE--EecCC---EEEEEEcceEEEEE
Confidence 356888999988666654443 35554 78888889887773
No 289
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=21.11 E-value=7.8e+02 Score=23.99 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=3.4
Q ss_pred eEEEee
Q 043340 162 NVVFMG 167 (327)
Q Consensus 162 ~Ivf~G 167 (327)
.|+|+|
T Consensus 95 ~I~~~g 100 (398)
T TIGR03099 95 CISFAG 100 (398)
T ss_pred HEEEeC
Confidence 466665
No 290
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=20.91 E-value=8.2e+02 Score=24.21 Aligned_cols=31 Identities=6% Similarity=-0.171 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHcCCCchHHHHHHHHHHhcC
Q 043340 12 FLYPAAQVICFFFFTCPSRGRQRAPWHVRAG 42 (327)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~ 42 (327)
+..+++.+|..++|.+-...++|.+|.+++.
T Consensus 173 ~~~~~~~~fA~~h~L~~v~i~dli~yr~~~~ 203 (367)
T PRK14019 173 ARLPDLEEFAKEHGLKIGTIADLIHYRSRTE 203 (367)
T ss_pred cchHHHHHHHHHcCCcEEEHHHHHHHHhhcc
Confidence 6788999999999999988999998876643
No 291
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.84 E-value=5.5e+02 Score=24.63 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=35.6
Q ss_pred HHHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC--CC--CCCCCcHHHHHHHHHHH
Q 043340 207 IKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE--GS--DYQRPYKKAVLAFAGAL 277 (327)
Q Consensus 207 i~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~--~~--~~~~p~~e~i~~f~~~L 277 (327)
++.|.+.++.+.+.+-+... +.+++.+++++++.++. ..+.+.+..+.+ .. ....|+.++++++.+.+
T Consensus 138 i~~l~~~g~~v~v~~vv~~~--N~~~l~~~~~~~~~lg~-~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~ 209 (358)
T TIGR02109 138 ARAVKAAGLPLTLNFVIHRH--NIDQIPEIIELAIELGA-DRVELATTQYYGWALLNRAALMPTRAQLEEATRIV 209 (358)
T ss_pred HHHHHhCCCceEEEEEeccC--CHHHHHHHHHHHHHcCC-CEEEEEeeeccCchhcchhhcCCCHHHHHHHHHHH
Confidence 34444444444444435444 45789999999998763 345543322222 11 12346666666555443
No 292
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=20.83 E-value=19 Score=26.75 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=29.5
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEE
Q 043340 41 AGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLI 88 (327)
Q Consensus 41 ~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~ 88 (327)
.+.. +++++.++-+++-+.+.++||......+ ..|.-.||+.++.+
T Consensus 28 g~~l-~~~~l~~~~~~l~~~y~~~GY~~s~v~~-p~q~i~~G~l~i~V 73 (76)
T PF08479_consen 28 GRCL-TLADLQQLADALTNYYREKGYITSRVYL-PPQDISDGVLTIRV 73 (76)
T ss_dssp TSBB--HHHHHHHHHHHHHHHHHTT-TT-EEEE-EEEEETTSEEEEEE
T ss_pred CCCc-CHHHHHHHHHHHHHHHHHcCceEEEEEe-CCeecCCCEEEEEE
Confidence 3444 5666666777788888888877766555 55566799887653
No 293
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=20.79 E-value=3.8e+02 Score=24.33 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=54.3
Q ss_pred CCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeeccc-------------
Q 043340 158 HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIRSA------------- 224 (327)
Q Consensus 158 ~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavSI~------------- 224 (327)
.....|+|+| |.-..+.+..+++. +. ..|++++-.-...+.+++... .+-|.|...
T Consensus 62 ~~~~~Ii~~g---p~k~~~~l~~a~~~-----~~--~~i~vDs~~el~~l~~~~~~~-~v~lRin~~~~~~~~~~~~~g~ 130 (251)
T PF02784_consen 62 FPPDRIIFTG---PGKSDEELEEAIEN-----GV--ATINVDSLEELERLAELAPEA-RVGLRINPGIGAGSHPKISTGG 130 (251)
T ss_dssp TTGGGEEEEC---SS--HHHHHHHHHH-----TE--SEEEESSHHHHHHHHHHHCTH-EEEEEBE-SESTTTSCHHCSSS
T ss_pred ccccceeEec---CcccHHHHHHHHhC-----Cc--eEEEeCCHHHHHHHhccCCCc-eeeEEEeeccccccccccCCCC
Confidence 4567899999 66665555555442 22 145665532233455555442 233333311
Q ss_pred -----CCCCcHHH-HHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcH-----HHHHHHHHHHH-hCCCe
Q 043340 225 -----GVNDQVEH-AVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYK-----KAVLAFAGALE-SHKIT 283 (327)
Q Consensus 225 -----GvND~~e~-a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~-----e~i~~f~~~L~-~~gi~ 283 (327)
|+. .++ +.++.+.++..+ ++++-+|-+.++....+.. +.+.++.+.+. +.|+.
T Consensus 131 ~~skFGi~--~~~~~~~~l~~~~~~~----l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 195 (251)
T PF02784_consen 131 KDSKFGID--IEEEAEEALERAKELG----LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFE 195 (251)
T ss_dssp HTSSSSBE--GGGHHHHHHHHHHHTT----EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCcCCcC--hHHHHHHHHHhhccce----EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhccccccc
Confidence 443 334 778887777742 5666666554554433332 33444445554 67755
No 294
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=20.74 E-value=2.2e+02 Score=24.92 Aligned_cols=50 Identities=4% Similarity=-0.069 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCC
Q 043340 9 AWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGR 70 (327)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~ 70 (327)
-++++.+++.+.|..+|.|+=++..+.+ .|+.+. +++|+.|.+.++.++.
T Consensus 57 k~n~~~~~l~~eL~~lglp~e~~~~l~~-~~~~~~-----------~~l~~~l~~~~l~~~~ 106 (174)
T cd04752 57 KYNVDGESLSSELQQLGLPKEHATSLCR-SYEEKQ-----------SKLQESLRANSLRLSR 106 (174)
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHH-HHHHHH-----------HHHHHHHHhcCCCCCc
Confidence 4678999999999999999999999999 666552 3488888887444443
No 295
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.47 E-value=4.3e+02 Score=24.81 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 227 NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG-SDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 227 ND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~-~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
-++++.+.+.++-++.++. ..+..=-|-|... ..|+.+..+.++.+++.+++.|+.+.
T Consensus 37 ie~~~~~~~~A~~lk~~g~-~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGV-HMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVV 95 (266)
T ss_pred CCCHHHHHHHHHHHHHcCC-CEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEE
Confidence 3568899999999998762 2233323445433 46787889999999999999999873
No 296
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.40 E-value=6.8e+02 Score=23.07 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=60.0
Q ss_pred CCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCCccee--ec-ccCCCCcHHHHH
Q 043340 158 HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLA--IR-SAGVNDQVEHAV 234 (327)
Q Consensus 158 ~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~v~la--vS-I~GvND~~e~a~ 234 (327)
.+.--|+|+--|.|-+. ...++++-+.+. |- .-|.+ |+ |.-+.+++ |+.+..+ ++ ..|+| -+.+-
T Consensus 16 nknaLvtfiTaG~P~v~--~T~kilkglq~g-G~--dIIEL---Gv-PfSDp~AD-GPtIq~~n~~aL~ng~t--l~~i~ 83 (268)
T KOG4175|consen 16 NKNALVTFITAGDPDVS--TTAKILKGLQSG-GS--DIIEL---GV-PFSDPLAD-GPTIQAANRRALLNGTT--LNSII 83 (268)
T ss_pred CCceEEEEEecCCCcHH--HHHHHHHHHhcC-Cc--CeEEe---cC-ccCccccC-CchhhhhHHHHHHcCCc--HHHHH
Confidence 34566788888988765 355666666431 21 11222 22 11111111 1111111 11 33443 23444
Q ss_pred HHHHHHHhcCCcceEEEEe-ccCCCCC---------------C--CCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 235 ELAELLHEWGRGHHVNLIP-FNPIEGS---------------D--YQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 235 ~L~~~l~~l~~~~~vnLIp-~np~~~~---------------~--~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
++.+..+.-+..+.+-|+. |||+-.. . ....++|+.+.|++..+++|+...
T Consensus 84 emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislv 152 (268)
T KOG4175|consen 84 EMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLV 152 (268)
T ss_pred HHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEE
Confidence 5555555444457777776 5564211 1 245567888899999999998753
No 297
>PRK00915 2-isopropylmalate synthase; Validated
Probab=20.31 E-value=5.2e+02 Score=26.67 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV 203 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~ 203 (327)
+.+.+|+++.+....++.......|.|.-+-..-.+++++.++++.+.+ .|. ..|.+ +|+|+
T Consensus 112 ~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~-~Ga--~~i~l~DTvG~ 174 (513)
T PRK00915 112 KMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAID-AGA--TTINIPDTVGY 174 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHH-cCC--CEEEEccCCCC
Confidence 4678888887776555443233456666654445677889999988853 454 45665 89997
No 298
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.25 E-value=7.9e+02 Score=23.76 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC----CCCCCcHHHHHHHHHHH
Q 043340 207 IKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS----DYQRPYKKAVLAFAGAL 277 (327)
Q Consensus 207 i~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~----~~~~p~~e~i~~f~~~L 277 (327)
++.|.+.++.+.+..-+...| .+++.++++++.+++. ..+.+.++.+.+.. ....|+.++++++.+.+
T Consensus 147 i~~l~~~g~~v~i~~vv~~~N--~~~i~~~~~~~~~lgv-~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 218 (378)
T PRK05301 147 ARLVKAHGYPLTLNAVIHRHN--IDQIPRIIELAVELGA-DRLELANTQYYGWALLNRAALMPTREQLERAERIV 218 (378)
T ss_pred HHHHHHCCCceEEEEEeecCC--HHHHHHHHHHHHHcCC-CEEEEecccccChhhhcccccCCCHHHHHHHHHHH
Confidence 344444555444444465554 5689999999998863 45666555443311 12346667776655543
No 299
>PLN02892 isocitrate lyase
Probab=20.24 E-value=2.4e+02 Score=29.66 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCC--CcHHHHHHHHHHHHhCCCeEE
Q 043340 227 NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQR--PYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 227 ND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~--p~~e~i~~f~~~L~~~gi~v~ 285 (327)
..+.++|+++++-++.. ..=.++.||..|..+|.. -++++++.|+..|-+.|+..-
T Consensus 410 ~Pdl~~A~~Fa~~V~~~---~P~k~LaYNlSPSFNW~~~g~~d~~i~~F~~dLaklGy~~Q 467 (570)
T PLN02892 410 SPDLAEATKFAEGVKAK---HPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARLGYCWQ 467 (570)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCeeeecCCCCcCCCCCCCCHHHHHHHHHHHHhcCceEE
Confidence 34467888888877763 222357799888877765 789999999999999998643
No 300
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=20.17 E-value=1.6e+02 Score=27.49 Aligned_cols=51 Identities=8% Similarity=-0.259 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCch---HHHHHHHHHHhcCCC---CCCCCCCCCC--HHHHHHHHhc
Q 043340 14 YPAAQVICFFFFTCPS---RGRQRAPWHVRAGAS---KTRRRPRPVP--QSFRNDLQEA 64 (327)
Q Consensus 14 ~~~l~~~~~~~g~~~~---ra~qi~~~~~~~~~~---~~~~~~~~l~--~~~r~~l~~~ 64 (327)
..+|.+|+.+-.-|-| -+..||.|++.+|+. ++|..+.+-| ++|.+.|+..
T Consensus 3 R~~LA~wlt~~~Np~faRv~VNRvW~~~fGrGlV~p~dD~g~~~~~PshPeLLd~La~~ 61 (266)
T PF07587_consen 3 RLALADWLTSPDNPLFARVIVNRVWQHLFGRGLVEPVDDFGPQGNPPSHPELLDWLAAE 61 (266)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHcCCcCcCCHhhccCCCCCCCCHHHHHHHHHH
Confidence 4678889887555544 356789999999876 3444444555 5888888776
No 301
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.08 E-value=6.9e+02 Score=22.98 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|++.|. || +.+..++-.++++...+
T Consensus 14 ~iD~~~~~~~i~~l~~---~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~ 61 (281)
T cd00408 14 EVDLDALRRLVEFLIE---AGVDGLVVLGTTGEAPTLTDEERKEVIEAVVE 61 (281)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECCCCcccccCCHHHHHHHHHHHHH
Confidence 5666667666665543 58999999884 77 45565666666666654
Done!