Query 043340
Match_columns 327
No_of_seqs 302 out of 2435
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 1.2E-78 4.2E-83 595.8 28.7 291 7-308 18-365 (404)
2 2yx0_A Radical SAM enzyme; pre 99.9 2.9E-25 9.8E-30 212.5 13.1 214 50-280 17-305 (342)
3 3c8f_A Pyruvate formate-lyase 99.9 6.8E-21 2.3E-25 171.2 18.5 178 95-285 8-244 (245)
4 2z2u_A UPF0026 protein MJ0257; 99.9 1.5E-21 5E-26 183.9 10.6 221 53-301 2-300 (311)
5 2a5h_A L-lysine 2,3-aminomutas 99.6 1.3E-14 4.3E-19 142.9 18.1 171 113-291 116-333 (416)
6 1tv8_A MOAA, molybdenum cofact 99.6 6E-14 2.1E-18 133.5 19.5 108 107-222 9-126 (340)
7 3t7v_A Methylornithine synthas 99.6 4E-16 1.4E-20 149.4 4.2 197 47-262 2-247 (350)
8 3iix_A Biotin synthetase, puta 99.6 3.8E-14 1.3E-18 134.9 17.7 154 116-279 57-258 (348)
9 3can_A Pyruvate-formate lyase- 99.6 3.5E-14 1.2E-18 123.4 13.1 120 160-286 4-180 (182)
10 1r30_A Biotin synthase; SAM ra 99.3 2.3E-10 7.7E-15 110.3 21.5 155 116-279 69-275 (369)
11 2qgq_A Protein TM_1862; alpha- 99.2 3.2E-10 1.1E-14 106.6 17.5 143 111-261 3-200 (304)
12 1olt_A Oxygen-independent copr 98.7 1.8E-07 6.1E-12 92.7 16.2 169 112-284 53-284 (457)
13 4fhd_A Spore photoproduct lyas 97.2 0.00057 1.9E-08 65.9 6.9 136 116-257 111-266 (368)
14 3lot_A Uncharacterized protein 65.4 42 0.0014 31.1 10.4 62 138-203 27-90 (314)
15 2yci_X 5-methyltetrahydrofolat 64.7 80 0.0027 28.4 12.7 128 139-283 30-162 (271)
16 1xw3_A Sulfiredoxin; retroredu 63.7 7.7 0.00026 30.6 4.2 56 248-303 13-77 (110)
17 3tr9_A Dihydropteroate synthas 63.2 95 0.0033 28.7 15.8 128 138-283 44-192 (314)
18 3e49_A Uncharacterized protein 63.0 57 0.002 30.2 10.8 62 138-203 27-90 (311)
19 1tv8_A MOAA, molybdenum cofact 60.1 23 0.0008 32.3 7.6 49 207-259 152-201 (340)
20 3e02_A Uncharacterized protein 60.0 53 0.0018 30.4 10.0 62 138-203 27-90 (311)
21 1f6y_A 5-methyltetrahydrofolat 59.5 97 0.0033 27.6 12.5 130 138-283 20-153 (262)
22 3no5_A Uncharacterized protein 57.4 57 0.002 29.6 9.6 112 138-256 25-148 (275)
23 3e96_A Dihydrodipicolinate syn 50.8 67 0.0023 29.4 9.1 46 139-187 29-76 (316)
24 1f6k_A N-acetylneuraminate lya 50.8 1.4E+02 0.0048 26.8 11.2 61 139-202 20-82 (293)
25 3c6c_A 3-keto-5-aminohexanoate 50.0 1.3E+02 0.0045 27.8 10.8 59 139-201 44-105 (316)
26 3l21_A DHDPS, dihydrodipicolin 49.5 1.5E+02 0.0052 26.8 13.8 46 139-187 32-79 (304)
27 1iv0_A Hypothetical protein; r 49.4 37 0.0012 25.8 5.9 62 228-292 35-96 (98)
28 3na8_A Putative dihydrodipicol 49.3 1.6E+02 0.0053 26.9 12.5 46 139-187 41-88 (315)
29 3n2t_A Putative oxidoreductase 48.1 1.6E+02 0.0056 26.9 13.1 110 138-258 117-228 (348)
30 4dsd_A Putative periplasmic pr 47.6 34 0.0012 27.4 5.7 47 50-97 9-55 (129)
31 2y7e_A 3-keto-5-aminohexanoate 47.2 1.3E+02 0.0043 27.4 10.2 110 139-255 30-152 (282)
32 1yzs_A Sulfiredoxin; PARB doma 46.8 20 0.00069 28.7 4.1 57 247-303 23-88 (121)
33 3k13_A 5-methyltetrahydrofolat 46.4 1.7E+02 0.006 26.7 13.1 132 138-283 32-171 (300)
34 3chv_A Prokaryotic domain of u 46.2 90 0.0031 28.5 9.0 109 139-255 30-151 (284)
35 2v9d_A YAGE; dihydrodipicolini 45.3 1.9E+02 0.0065 26.8 14.2 47 138-187 47-95 (343)
36 3db7_A Putative calcium-regula 45.3 30 0.001 27.5 5.1 46 50-97 10-55 (127)
37 2vp8_A Dihydropteroate synthas 42.7 2.1E+02 0.0071 26.4 11.8 101 138-254 60-168 (318)
38 1pyf_A IOLS protein; beta-alph 40.8 2E+02 0.0068 25.7 13.2 111 139-259 97-208 (312)
39 1aj0_A DHPS, dihydropteroate s 40.0 2.1E+02 0.0072 25.8 14.6 130 138-283 33-178 (282)
40 3qze_A DHDPS, dihydrodipicolin 39.9 2.2E+02 0.0074 25.9 14.0 60 139-202 40-101 (314)
41 2h1v_A Ferrochelatase; rossman 38.9 2.2E+02 0.0076 25.7 10.8 73 161-234 176-267 (310)
42 1q7z_A 5-methyltetrahydrofolat 38.7 2.5E+02 0.0084 28.0 11.6 129 140-283 337-467 (566)
43 1eye_A DHPS 1, dihydropteroate 38.2 2.2E+02 0.0077 25.6 16.1 128 138-283 24-170 (280)
44 3m5v_A DHDPS, dihydrodipicolin 38.0 2.3E+02 0.0077 25.5 13.5 60 139-202 24-86 (301)
45 3b4u_A Dihydrodipicolinate syn 37.1 2.3E+02 0.0079 25.4 13.6 61 138-202 19-81 (294)
46 2cw6_A Hydroxymethylglutaryl-C 36.4 2.3E+02 0.008 25.3 13.8 141 137-291 21-180 (298)
47 1vr6_A Phospho-2-dehydro-3-deo 36.2 82 0.0028 29.6 7.2 62 223-285 112-174 (350)
48 3lg3_A Isocitrate lyase; conse 35.0 24 0.00083 34.3 3.4 55 229-286 295-350 (435)
49 3rmj_A 2-isopropylmalate synth 35.0 1.4E+02 0.0047 28.1 8.6 62 139-203 120-182 (370)
50 3daq_A DHDPS, dihydrodipicolin 35.0 2.5E+02 0.0085 25.1 12.8 60 139-202 19-80 (292)
51 1ydn_A Hydroxymethylglutaryl-C 34.4 2.5E+02 0.0085 25.0 13.0 142 137-291 20-179 (295)
52 1vs1_A 3-deoxy-7-phosphoheptul 33.0 94 0.0032 28.1 6.9 62 223-285 44-106 (276)
53 2y5s_A DHPS, dihydropteroate s 33.0 2.8E+02 0.0096 25.2 13.5 127 138-283 41-186 (294)
54 3tak_A DHDPS, dihydrodipicolin 32.0 2.8E+02 0.0094 24.8 14.5 60 139-202 18-79 (291)
55 3ewb_X 2-isopropylmalate synth 31.8 1.6E+02 0.0055 26.5 8.3 101 139-242 113-222 (293)
56 3lfj_A Manxb, phosphotransfera 31.8 69 0.0024 27.4 5.4 63 228-293 105-171 (187)
57 3fkr_A L-2-keto-3-deoxyarabona 29.7 3.1E+02 0.011 24.7 14.1 60 139-202 25-86 (309)
58 1nu0_A Hypothetical protein YQ 29.3 72 0.0025 25.7 4.9 63 232-297 41-104 (138)
59 3elg_A Uncharacterized peripla 29.1 98 0.0033 24.4 5.6 44 50-96 10-55 (128)
60 2l69_A Rossmann 2X3 fold prote 28.7 1.5E+02 0.0051 22.7 6.2 66 206-286 41-106 (134)
61 3erp_A Putative oxidoreductase 28.1 3.5E+02 0.012 24.7 13.4 58 140-201 132-191 (353)
62 1lbq_A Ferrochelatase; rossman 27.8 3E+02 0.01 25.7 9.6 95 142-242 218-324 (362)
63 3dz1_A Dihydrodipicolinate syn 27.2 3.5E+02 0.012 24.4 12.6 59 139-202 25-85 (313)
64 3p3v_A PTS system, N-acetylgal 27.1 1E+02 0.0036 25.6 5.6 63 228-293 86-152 (163)
65 2r91_A 2-keto-3-deoxy-(6-phosp 27.0 3.3E+02 0.011 24.1 13.0 47 139-188 15-63 (286)
66 1w3i_A EDA, 2-keto-3-deoxy glu 26.8 3.4E+02 0.012 24.2 14.1 47 138-187 15-63 (293)
67 3eb2_A Putative dihydrodipicol 26.7 3.5E+02 0.012 24.2 12.0 140 139-291 21-168 (300)
68 3i4e_A Isocitrate lyase; struc 26.6 31 0.0011 33.6 2.5 59 224-286 291-350 (439)
69 3v0s_A Perakine reductase; AKR 25.9 3.7E+02 0.013 24.3 11.3 109 139-258 98-208 (337)
70 1zco_A 2-dehydro-3-deoxyphosph 25.2 1.7E+02 0.0059 26.0 7.1 60 225-285 31-91 (262)
71 2nuw_A 2-keto-3-deoxygluconate 24.6 3.7E+02 0.013 23.9 13.7 46 139-187 16-63 (288)
72 4exb_A Putative uncharacterize 24.6 3.3E+02 0.011 24.2 9.0 67 206-292 174-240 (292)
73 2v5d_A O-GLCNACASE NAGJ; famil 24.4 1.4E+02 0.0047 30.8 7.1 67 229-299 164-238 (737)
74 2dqw_A Dihydropteroate synthas 24.2 4E+02 0.014 24.1 13.1 127 138-283 47-192 (294)
75 4dpp_A DHDPS 2, dihydrodipicol 23.7 4.5E+02 0.015 24.5 11.5 139 139-292 76-222 (360)
76 1vsq_C Mannose-specific phosph 23.0 2.6E+02 0.0089 23.1 7.4 61 228-292 87-151 (165)
77 3nvt_A 3-deoxy-D-arabino-heptu 22.7 1.7E+02 0.0059 27.7 6.9 59 225-285 151-210 (385)
78 2hmc_A AGR_L_411P, dihydrodipi 22.6 4.5E+02 0.016 24.1 13.1 138 138-291 42-189 (344)
79 3flu_A DHDPS, dihydrodipicolin 22.4 4.2E+02 0.014 23.6 14.5 60 139-202 24-85 (297)
80 3s5o_A 4-hydroxy-2-oxoglutarat 22.2 4.3E+02 0.015 23.7 13.2 140 139-291 31-180 (307)
81 2v5c_A O-GLCNACASE NAGJ; glyco 21.2 1.5E+02 0.0052 29.8 6.5 66 229-298 164-237 (594)
82 3v39_A D-alanyl-D-alanine carb 21.2 80 0.0027 30.5 4.3 30 161-191 68-97 (418)
83 3u7q_B Nitrogenase molybdenum- 21.0 2.7E+02 0.0091 27.4 8.2 106 143-253 129-255 (523)
84 3si9_A DHDPS, dihydrodipicolin 20.9 4.7E+02 0.016 23.7 13.5 46 139-187 39-86 (315)
85 3n6q_A YGHZ aldo-keto reductas 20.6 4.7E+02 0.016 23.6 14.0 59 140-202 111-171 (346)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=1.2e-78 Score=595.78 Aligned_cols=291 Identities=36% Similarity=0.538 Sum_probs=257.8
Q ss_pred ccCCCCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEE
Q 043340 7 APAWPFLYPAAQVICFFFFTCPSRGRQRAPWHVRAGASKTRRRPRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKL 86 (327)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~ra~qi~~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~ 86 (327)
.+|++|+++||++++.++|+|+|||+|||+|||++++. +|++||||||++|++|++. |.+..++++..+.|.|||+||
T Consensus 18 ~~l~~~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~~~-~~~~mt~l~k~~r~~l~~~-~~~~~~~~~~~~~s~dgt~K~ 95 (404)
T 3rfa_A 18 INLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCD-NFDEMTDINKVLRGKLKEV-AEIRAPEVVEEQRSSDGTIKW 95 (404)
T ss_dssp EEGGGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHSCCC-CGGGCTTSCHHHHHHHHHH-EECCCCEEEEEEECTTSCEEE
T ss_pred CCcccCCHHHHHHHHHHcCCcchHHHHHHHHHHhcCCC-ChHHhcccCHHHHHHHHhc-CCCCCCceEEEEECCCCCEEE
Confidence 57899999999999999999999999999999999999 9999999999999999999 999999999999999999999
Q ss_pred EEEecCCCeEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-------CC
Q 043340 87 LIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK-------HR 159 (327)
Q Consensus 87 l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~~~~r~lt~~EIv~qv~~~~~~~~-------~~ 159 (327)
||+| ||+.||||+||++ .|.|+|||+|+||||+|.||+++..++.+++|++||++|+......++ .+
T Consensus 96 l~~l-dg~~iEtV~i~~~-----~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~ 169 (404)
T 3rfa_A 96 AIAV-GDQRVETVYIPED-----DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169 (404)
T ss_dssp EEEE-TTEEEEEEEEECS-----SCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCS
T ss_pred EEEc-CCceEEEEEEecC-----CCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCC
Confidence 9999 9999999999976 489999999999999999999999999999999999999998876653 36
Q ss_pred cceEEEeeCCCCcCChhhHHHHHHHhhh--ccCCCCccEEEEcCCcHHHHHHHHhcCCCcceeec---------------
Q 043340 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNK--DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAIR--------------- 222 (327)
Q Consensus 160 v~~Ivf~G~GEPlln~~~v~~~i~~l~~--~~gi~~r~itisTnG~~~~i~~L~~~~~~v~lavS--------------- 222 (327)
+++|+||||||||+|++++.++++.+++ ++++|.++|+|+|||+.|.+++|++. .++.|+||
T Consensus 170 i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~-~d~~LaiSLka~d~e~~~~i~pv 248 (404)
T 3rfa_A 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDM-IDVALAISLHAPNDEIRDEIVPI 248 (404)
T ss_dssp CSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHH-CCCEEEEECCCSSHHHHHHHSGG
T ss_pred ccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHh-hcceEEecccCCCHHHHHHhcCC
Confidence 8999999999999999999999999985 46779999999999999999999876 45555555
Q ss_pred ---------------------------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHH
Q 043340 223 ---------------------------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA 269 (327)
Q Consensus 223 ---------------------------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~ 269 (327)
|||+||+++++++|++|+++++ ++||||||||.++.+|++|+.++
T Consensus 249 ~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~--~~VnLIpynP~~~~~~~~ps~e~ 326 (404)
T 3rfa_A 249 NKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTP--CKINLIPWNPFPGAPYGRSSNSR 326 (404)
T ss_dssp GGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSC--EEEEEEECCCCTTCCCCBCCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCC--CcEEEEeccCCCCCCCCCCCHHH
Confidence 8999999999999999999975 79999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCcccccccchhhhhhccC
Q 043340 270 VLAFAGALESHKITTSIRQTRGLDASAACGQLRNEFQKS 308 (327)
Q Consensus 270 i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~~~ 308 (327)
+++|+++|+++|+.++||+++|.||+||||||+.+.+++
T Consensus 327 i~~f~~iL~~~Gi~vtiR~~~G~di~aaCGQL~~~~~~~ 365 (404)
T 3rfa_A 327 IDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDR 365 (404)
T ss_dssp HHHHHHHHHHTTCEEEECCCCCC----------------
T ss_pred HHHHHHHHHHcCCcEEEcCCCCcccccccccchhhhhhh
Confidence 999999999999999999999999999999999887543
No 2
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.92 E-value=2.9e-25 Score=212.48 Aligned_cols=214 Identities=16% Similarity=0.121 Sum_probs=160.4
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEecCCCeEEEEeeccCCCCCCceeEEEEEec-CCCCCCCCC
Q 043340 50 PRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ-VGCPLRCSF 128 (327)
Q Consensus 50 ~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq-~GCnl~C~f 128 (327)
.+|+|+++|+.|.+.||.+.. .. ....--++|.|+++ .+|..+|+++++.. .+..++++++ .|||++|.|
T Consensus 17 ~~~~~~~~r~~l~~~~~~~~~-~~-s~~~~~~~~~~~l~--~~~~~~~~~~~~~~-----~~~~l~i~~~~~gCnl~C~f 87 (342)
T 2yx0_A 17 NPNMPKEVAELFRKQHYEIVG-RH-SGVKLCHWLKKSLT--EGRFCYKQKFYGIH-----SHRCLQMTPVLAWCTHNCIF 87 (342)
T ss_dssp CCSSCHHHHHHHHHTTCEEEB-TT-EEECCCTTHHHHHH--HCCCCHHHHHHCCC-----GGGEEEEESCSSCCSBCCTT
T ss_pred cCcchHHHHHHHhhCCceEec-cc-cceEeccccHhhhc--CCCccceeEEeeec-----CCCeEEEEeChhhhhCcCcc
Confidence 378999999999986577542 11 11111277888876 79999999998854 3667888888 599999999
Q ss_pred CCCCCCC------CCCCCCHHHHHHHHHHHHHHhc-----------------CCcceEEEeeCCCCcCChhhHHHHHHHh
Q 043340 129 CATGKGG------FSRNLSSHEIVGQVLAIEEIFK-----------------HRVTNVVFMGMGEPMLNLKSVLEAHRCL 185 (327)
Q Consensus 129 C~t~~~~------~~r~lt~~EIv~qv~~~~~~~~-----------------~~v~~Ivf~G~GEPlln~~~v~~~i~~l 185 (327)
|+++... ..+.++++||++++....+.+. ..+++|+|+|+|||++++ .+.++++.+
T Consensus 88 C~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~-~l~~ll~~~ 166 (342)
T 2yx0_A 88 CWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP-YMGDLVEEF 166 (342)
T ss_dssp CCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-THHHHHHHH
T ss_pred cCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh-hHHHHHHHH
Confidence 9997432 4578999999999987654321 136789999559999995 799999999
Q ss_pred hhccCCCCccEEEEcCCcHHH-HHHHHhcC-CCcceeec-----------------------------------------
Q 043340 186 NKDVQIGQRMITISTVGVPNT-IKKLASYK-LQSTLAIR----------------------------------------- 222 (327)
Q Consensus 186 ~~~~gi~~r~itisTnG~~~~-i~~L~~~~-~~v~lavS----------------------------------------- 222 (327)
++ .|+ +++++|||+.+. +++|.+.+ ....+.||
T Consensus 167 ~~-~g~---~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~~g~~v~i~ 242 (342)
T 2yx0_A 167 HK-RGF---TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDLPTRTVVR 242 (342)
T ss_dssp HH-TTC---EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTTCSSEEEEE
T ss_pred HH-CCC---cEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHhCCCCEEEE
Confidence 64 588 899999998764 77887643 12344444
Q ss_pred ---ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-----CCCCCcHHHHHHHHHHHHhC
Q 043340 223 ---SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-----DYQRPYKKAVLAFAGALESH 280 (327)
Q Consensus 223 ---I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-----~~~~p~~e~i~~f~~~L~~~ 280 (327)
++|.|++. ++++++++++++ ..+++++||+|.+.. .+..|+.+++.+|.+.+.+.
T Consensus 243 ~~l~~g~n~~~--~~~l~~~l~~~~-~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~ 305 (342)
T 2yx0_A 243 LTLVKGENMHS--PEKYAKLILKAR-PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKH 305 (342)
T ss_dssp EEECTTTTCCC--HHHHHHHHHHHC-CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTT
T ss_pred EEEECCccHHH--HHHHHHHHHHcC-CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHh
Confidence 88899864 899999999876 478999999997654 35688999999999999875
No 3
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.86 E-value=6.8e-21 Score=171.22 Aligned_cols=178 Identities=20% Similarity=0.325 Sum_probs=137.1
Q ss_pred eEEEEeeccCCCCCCceeEEEEEecCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCC
Q 043340 95 LIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKG---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP 171 (327)
Q Consensus 95 ~iE~V~i~~~~~~g~~r~tlcVssq~GCnl~C~fC~t~~~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEP 171 (327)
.||.+..+. ++| ..+++. +.|||++|.||+.+.. ...+.++++++++++.......+..+..|+|+| |||
T Consensus 8 ~~~~~~~~~--~pg---~~~~i~-t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~G-GEP 80 (245)
T 3c8f_A 8 SFESCGTVD--GPG---IRFITF-FQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG-GEA 80 (245)
T ss_dssp EEEEEECTT--SSS---EEEEEE-ESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE-SCG
T ss_pred cceeccccC--CCC---cEEEEE-eCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEEC-CCc
Confidence 477777663 455 233343 4699999999998642 345678999999998876654444578999999 999
Q ss_pred cCChhhHHHHHHHhhhccCCCCccEEEEcCCcH----HHHHHHHhcCCCcceeec-------------------------
Q 043340 172 MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP----NTIKKLASYKLQSTLAIR------------------------- 222 (327)
Q Consensus 172 lln~~~v~~~i~~l~~~~gi~~r~itisTnG~~----~~i~~L~~~~~~v~lavS------------------------- 222 (327)
+++++.+.++++.+++ .|+ +++++|||+. +.+++|.+. .+ .+.+|
T Consensus 81 ~l~~~~l~~l~~~~~~-~~~---~i~i~Tng~~~~~~~~~~~l~~~-~~-~v~isld~~~~~~~~~~~~~~~~~~~~~i~ 154 (245)
T 3c8f_A 81 ILQAEFVRDWFRACKK-EGI---HTCLDTNGFVRRYDPVIDELLEV-TD-LVMLDLKQMNDEIHQNLVGVSNHRTLEFAK 154 (245)
T ss_dssp GGGHHHHHHHHHHHHT-TTC---CEEEEECCCCCCCCHHHHHHHHT-CS-EEEEECCCSSHHHHHHHHSSCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-cCC---cEEEEeCCCcCcCHHHHHHHHHh-CC-EEEEeCCCCCHHHhhhccCCCHHHHHHHHH
Confidence 9998778999999964 477 7999999953 457777764 22 23333
Q ss_pred ---------------ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC------------CCCCCcHHHHHHHHH
Q 043340 223 ---------------SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS------------DYQRPYKKAVLAFAG 275 (327)
Q Consensus 223 ---------------I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~------------~~~~p~~e~i~~f~~ 275 (327)
++|.||+.+++.++++++++++....++++||+|.++. .+++|+.++++++.+
T Consensus 155 ~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 234 (245)
T 3c8f_A 155 YLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKG 234 (245)
T ss_dssp HHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHH
T ss_pred HHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHH
Confidence 88999999999999999999864468999999996532 356889999999999
Q ss_pred HHHhCCCeEE
Q 043340 276 ALESHKITTS 285 (327)
Q Consensus 276 ~L~~~gi~v~ 285 (327)
.+++.|+.++
T Consensus 235 ~~~~~G~~v~ 244 (245)
T 3c8f_A 235 ILEQYGHKVM 244 (245)
T ss_dssp HHHTTTCCBC
T ss_pred HHHhcCCeec
Confidence 9999999864
No 4
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=1.5e-21 Score=183.92 Aligned_cols=221 Identities=17% Similarity=0.224 Sum_probs=145.8
Q ss_pred CCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEecCCCeEEEEeeccCCCCCCceeEEEEEec-CCCCCCCCCCCC
Q 043340 53 VPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ-VGCPLRCSFCAT 131 (327)
Q Consensus 53 l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE~V~i~~~~~~g~~r~tlcVssq-~GCnl~C~fC~t 131 (327)
.|+.+++.|..+||.+.. .....--+.|.|.+. .+|..+++++++.. .+.+++++++ .|||++|.||++
T Consensus 2 ~~~~~~~~l~~~gy~~~~---~s~~~~~~w~~~~l~--~~~~~~~~~~~~~~-----~~~~l~i~~t~~~Cn~~C~fC~~ 71 (311)
T 2z2u_A 2 IPEEIYKILRKQRYQIDG---HTAVKLCGWVRKKML--EDKNCYKSKFYGIE-----THRCIQCTPSVIWCQQNCIFCWR 71 (311)
T ss_dssp CCHHHHHHHHTTTCEEET---TEEEECCTTHHHHHT--TCCCCHHHHHHCCC-----GGGEEEEESCSSCCSCC------
T ss_pred CchHHHHHHHhcCceeec---ccceeeccChHhhhc--CCCceEEEEEeeec-----CCCeEEeccChhHHhCcCcccCC
Confidence 478899999999887754 111111245555443 78899998887754 3678999999 799999999998
Q ss_pred CCC---C-------CCCCCCHHHHHHHHHHHHHHh------------------cCCcceEEEeeCCCCcCChhhHHHHHH
Q 043340 132 GKG---G-------FSRNLSSHEIVGQVLAIEEIF------------------KHRVTNVVFMGMGEPMLNLKSVLEAHR 183 (327)
Q Consensus 132 ~~~---~-------~~r~lt~~EIv~qv~~~~~~~------------------~~~v~~Ivf~G~GEPlln~~~v~~~i~ 183 (327)
+.. + ..+.++++|+++++....+.+ ...+++|+|+|+||||++ +.+.++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s~gGEPll~-~~l~~li~ 150 (311)
T 2z2u_A 72 VLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTLY-PYLDELIK 150 (311)
T ss_dssp ----------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEECSSSCGGGS-TTHHHHHH
T ss_pred CCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEeCCcCccch-hhHHHHHH
Confidence 641 1 247899999999887653321 013578999944999997 56999999
Q ss_pred HhhhccCCCCccEEEEcCCcHHH-HHHHHhcCCCcceeec----------------------------------------
Q 043340 184 CLNKDVQIGQRMITISTVGVPNT-IKKLASYKLQSTLAIR---------------------------------------- 222 (327)
Q Consensus 184 ~l~~~~gi~~r~itisTnG~~~~-i~~L~~~~~~v~lavS---------------------------------------- 222 (327)
.+++ .|+ +++++|||+.+. +++| +. ..+.||
T Consensus 151 ~~~~-~g~---~~~l~TNG~~~~~l~~L---~~-~~v~isld~~~~~~~~~i~~~~~~~~~~v~~~i~~l~~~g~v~i~~ 222 (311)
T 2z2u_A 151 IFHK-NGF---TTFVVSNGILTDVIEKI---EP-TQLYISLDAYDLDSYRRICGGKKEYWESILNTLDILKEKKRTCIRT 222 (311)
T ss_dssp HHHH-TTC---EEEEEECSCCHHHHHHC---CC-SEEEEECCCSSTTTC----CCCHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred HHHH-CCC---cEEEECCCCCHHHHHhC---CC-CEEEEEeecCCHHHHHHHhCCccchHHHHHHHHHHHHhcCCEEEEE
Confidence 9975 488 899999998653 4443 11 122222
Q ss_pred --ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC-----CCCcHHHHHHHHHHHHh-CCCeEEEcCCCCccc
Q 043340 223 --SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-----QRPYKKAVLAFAGALES-HKITTSIRQTRGLDA 294 (327)
Q Consensus 223 --I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~-----~~p~~e~i~~f~~~L~~-~gi~v~vR~~~G~di 294 (327)
++|+|| ++.++++++++++ ...++++||+|.+...+ ..|+.+++.+|.+.+.+ .|+.+. |...
T Consensus 223 ~~~~g~n~---~~~~~~~~~~~~~-~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~-----~~~~ 293 (311)
T 2z2u_A 223 TLIRGYND---DILKFVELYERAD-VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKLI-----DDSE 293 (311)
T ss_dssp EECTTTTC---CGGGTHHHHHHHT-CSEEEEEECC------------CCCCHHHHHHHHHHHHTSSSEEEE-----EEEG
T ss_pred EEECCcch---hHHHHHHHHHHcC-CCEEEEEeeEEccccccccccccCCCHHHHHHHHHHHHHhcCceEE-----eccC
Confidence 788888 6888899998875 46899999999876543 57899999999999987 675543 3333
Q ss_pred ccccchh
Q 043340 295 SAACGQL 301 (327)
Q Consensus 295 ~aaCGqL 301 (327)
...|..+
T Consensus 294 ~~~~~l~ 300 (311)
T 2z2u_A 294 DSRVALL 300 (311)
T ss_dssp GGTEEEE
T ss_pred cceEEEE
Confidence 4455444
No 5
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.62 E-value=1.3e-14 Score=142.87 Aligned_cols=171 Identities=18% Similarity=0.213 Sum_probs=113.5
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChh-hHHHHHHHhhhcc
Q 043340 113 TACVSSQVGCPLRCSFCATGKGGF--SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLK-SVLEAHRCLNKDV 189 (327)
Q Consensus 113 tlcVssq~GCnl~C~fC~t~~~~~--~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~-~v~~~i~~l~~~~ 189 (327)
++.++.+.+||++|.||+.+.... .+.++.+++.+.+..+.+ ..++..|+|+| ||||++++ .+.++++.+++..
T Consensus 116 ~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~--~~gi~~V~ltG-GEPll~~d~~L~~il~~l~~~~ 192 (416)
T 2a5h_A 116 RVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRN--TPQVRDVLLSG-GDALLVSDETLEYIIAKLREIP 192 (416)
T ss_dssp EEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHT--CTTCCEEEEEE-SCTTSSCHHHHHHHHHHHHTST
T ss_pred EEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHh--cCCCcEEEEEC-CCCCCCCHHHHHHHHHHHHhcC
Confidence 556666799999999999875322 357999998776665442 13688999999 99999976 5888999886432
Q ss_pred CCCCccEEEEcCCc--------HHHHHHHHhcCCCcceeec-------------------------------ccCCCCcH
Q 043340 190 QIGQRMITISTVGV--------PNTIKKLASYKLQSTLAIR-------------------------------SAGVNDQV 230 (327)
Q Consensus 190 gi~~r~itisTnG~--------~~~i~~L~~~~~~v~lavS-------------------------------I~GvND~~ 230 (327)
++ +.|++.|||. .+.++.|.+. ..+++.++ ++|+||++
T Consensus 193 ~v--~~i~i~Tng~~~~p~~it~e~l~~L~~~-~~v~Isl~~~~~~ei~~~v~~ai~~L~~aGi~v~i~~vll~GvNd~~ 269 (416)
T 2a5h_A 193 HV--EIVRIGSRTPVVLPQRITPELVNMLKKY-HPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCV 269 (416)
T ss_dssp TC--CEEEEECSHHHHCGGGCCHHHHHHHGGG-CSEEEEECCCSGGGCCHHHHHHHHHHHHTTCCEEEEEECCTTTTCSH
T ss_pred Cc--cEEEEEecccccccccCCHHHHHHHHhc-CcEEEEEecCCHHHHhHHHHHHHHHHHHcCCEEEEEEEEECCCCCCH
Confidence 44 3689999992 1235555544 12222221 78999999
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeccCC-CCCCCCCCcHHHHHHHHHHHHhC--C--CeEEEcCCCC
Q 043340 231 EHAVELAELLHEWGRGHHVNLIPFNPI-EGSDYQRPYKKAVLAFAGALESH--K--ITTSIRQTRG 291 (327)
Q Consensus 231 e~a~~L~~~l~~l~~~~~vnLIp~np~-~~~~~~~p~~e~i~~f~~~L~~~--g--i~v~vR~~~G 291 (327)
+++.++++++..++ .....+.+.|. .+..+-..+.++..++.+.++.. | ++..++...|
T Consensus 270 e~l~~l~~~l~~lg--v~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l~~~~~G~~~p~~v~~~pg 333 (416)
T 2a5h_A 270 HVMKELVNKLVKIR--VRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPG 333 (416)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCGGGCCEEEEEETT
T ss_pred HHHHHHHHHHHHcC--CceEEEeecCCCCCcccccCCcccHHHHHHHHHHHCCCCCCceEEEECCC
Confidence 99999999999875 44444555543 33333334455556666666543 3 4556665543
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.59 E-value=6e-14 Score=133.46 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=78.4
Q ss_pred CCCceeEEEEEecCCCCCCCCCCCCCC-----C---CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhH
Q 043340 107 KGPMRLTACVSSQVGCPLRCSFCATGK-----G---GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSV 178 (327)
Q Consensus 107 ~g~~r~tlcVssq~GCnl~C~fC~t~~-----~---~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v 178 (327)
+|..-..+.++.+.+||++|.||+.+. . ...+.++.+++.+.+..+.+ .++..|.|+| ||||+++ .+
T Consensus 9 ~gr~~~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~---~g~~~i~~tG-GEPll~~-~l 83 (340)
T 1tv8_A 9 LGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE---LGVKKIRITG-GEPLMRR-DL 83 (340)
T ss_dssp TSCBCCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH---TTCCEEEEES-SCGGGST-TH
T ss_pred CCCccCeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH---CCCCEEEEeC-CCccchh-hH
Confidence 443335788888999999999999865 1 22356999998877766543 3688999999 9999996 47
Q ss_pred HHHHHHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec
Q 043340 179 LEAHRCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR 222 (327)
Q Consensus 179 ~~~i~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS 222 (327)
.++++.+++..++ ..++++|||+. +.++.|.+.++. .+.||
T Consensus 84 ~~li~~~~~~~~~--~~i~i~TNG~ll~~~~~~L~~~g~~-~v~iS 126 (340)
T 1tv8_A 84 DVLIAKLNQIDGI--EDIGLTTNGLLLKKHGQKLYDAGLR-RINVS 126 (340)
T ss_dssp HHHHHHHTTCTTC--CEEEEEECSTTHHHHHHHHHHHTCC-EEEEE
T ss_pred HHHHHHHHhCCCC--CeEEEEeCccchHHHHHHHHHCCCC-EEEEe
Confidence 7999988643233 37999999984 356777776532 34444
No 7
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.59 E-value=4e-16 Score=149.40 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=129.4
Q ss_pred CCCCCCCC-HHHHHHHHhcCCCCCCCceeeEEecCC-CcEEEEEEecCCCeEEEEeeccCCCCCCcee--EEEEEecCCC
Q 043340 47 RRRPRPVP-QSFRNDLQEAGWTVGRLPIFRTVTAAD-GTVKLLIKLEDNRLIETVGIPVEDEKGPMRL--TACVSSQVGC 122 (327)
Q Consensus 47 ~~~~~~l~-~~~r~~l~~~~~~~~~~~~~~~~~s~d-gt~K~l~~l~dg~~iE~V~i~~~~~~g~~r~--tlcVssq~GC 122 (327)
|++|+|++ +++++++.+. ..+..-+...-..+.| .+.++|+++.|.. .... .| .+. ...|..+.||
T Consensus 2 ~~~m~~~~~~~i~~k~~~~-~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~------r~~~--~g-~~v~~~~~i~~t~~C 71 (350)
T 3t7v_A 2 IQKMALDEFDSLGDKVIEG-YQLTDNDLRTLLSLESKEGLERLYSAARKV------RDHY--FG-NRVFLNCFIYFSTYC 71 (350)
T ss_dssp ----------CHHHHHHTT-CCCCHHHHHHHHTCCSHHHHHHHHHHHHHH------HHHH--HT-TEEEEEEEEEEECCC
T ss_pred hhhHhHHHHHHHHHHHHcC-CCCCHHHHHHHhcCCChhHHHHHHHHHHHH------HHHH--CC-CEEEEEEeeecCCCc
Confidence 79999999 8899998776 5555444443333333 4677777777621 1110 11 122 2235567899
Q ss_pred CCCCCCCCCCCCC-C-CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCC--hhhHHHHHHHhhhccCCCCccEE
Q 043340 123 PLRCSFCATGKGG-F-SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLN--LKSVLEAHRCLNKDVQIGQRMIT 197 (327)
Q Consensus 123 nl~C~fC~t~~~~-~-~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln--~~~v~~~i~~l~~~~gi~~r~it 197 (327)
+++|.||...... . ...++++||++++....+ .+++.|+|+| || |+.+ .+.+.++++.+++.+++ +++
T Consensus 72 ~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~---~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik~~~~i---~i~ 144 (350)
T 3t7v_A 72 KNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG---AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVKEELGL---PIM 144 (350)
T ss_dssp CCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT---SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHHHHHCS---CEE
T ss_pred CCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH---CCCCEEEEee-CCCCccccCHHHHHHHHHHHHhhcCc---eEE
Confidence 9999999975432 2 234899999999876543 4789999999 98 9864 68899999999766677 777
Q ss_pred EEcCCcH-HHHHHHHhcCCCcceeec---------------------------------------ccCCCCcHHHHHHHH
Q 043340 198 ISTVGVP-NTIKKLASYKLQSTLAIR---------------------------------------SAGVNDQVEHAVELA 237 (327)
Q Consensus 198 isTnG~~-~~i~~L~~~~~~v~lavS---------------------------------------I~GvND~~e~a~~L~ 237 (327)
++..-+. +.+++|.+.|++ .+.++ |-|++++.+++.+.+
T Consensus 145 ~s~g~~~~e~l~~L~~aG~~-~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l 223 (350)
T 3t7v_A 145 ISPGLMDNATLLKAREKGAN-FLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSL 223 (350)
T ss_dssp EECSSCCHHHHHHHHHTTEE-EEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCC-EEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHH
Confidence 6543233 458888887642 11111 778899999999999
Q ss_pred HHHHhcCCcceEEEEeccCCCCCCC
Q 043340 238 ELLHEWGRGHHVNLIPFNPIEGSDY 262 (327)
Q Consensus 238 ~~l~~l~~~~~vnLIp~np~~~~~~ 262 (327)
+++++++ ...+++.||+|.++.++
T Consensus 224 ~~l~~l~-~~~v~~~~f~p~~gT~l 247 (350)
T 3t7v_A 224 RGMSTND-PDMVRVMTFLPQEGTPL 247 (350)
T ss_dssp HHHHHTC-CSEEEEEECCCCTTSTT
T ss_pred HHHHhCC-CCEEEecceeeCCCCcC
Confidence 9999986 35699999999887654
No 8
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.59 E-value=3.8e-14 Score=134.93 Aligned_cols=154 Identities=16% Similarity=0.254 Sum_probs=114.4
Q ss_pred EEecCCCCCCCCCCCCCCCC--CC-CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC-CcCChhhHHHHHHHhhhccCC
Q 043340 116 VSSQVGCPLRCSFCATGKGG--FS-RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE-PMLNLKSVLEAHRCLNKDVQI 191 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~~~~--~~-r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE-Plln~~~v~~~i~~l~~~~gi 191 (327)
|.++.|||++|.||+..... .. ..++++||++++....+ .+++.|+|+| || |+++++.+.++++.+++. ++
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~---~g~~~i~~~g-Ge~p~~~~~~~~~li~~i~~~-~~ 131 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQ---FGAKTIVLQS-GEDPYXMPDVISDIVKEIKKM-GV 131 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHH---TTCSEEEEEE-SCCGGGTTHHHHHHHHHHHTT-SC
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHH---CCCCEEEEEe-CCCCCccHHHHHHHHHHHHhc-Cc
Confidence 56679999999999965432 12 25899999999987654 3689999999 99 999989999999999754 66
Q ss_pred CCccEEEEcCCcH-HHHHHHHhcCCCcceeec---------------------------------------ccCC-CCcH
Q 043340 192 GQRMITISTVGVP-NTIKKLASYKLQSTLAIR---------------------------------------SAGV-NDQV 230 (327)
Q Consensus 192 ~~r~itisTnG~~-~~i~~L~~~~~~v~lavS---------------------------------------I~Gv-ND~~ 230 (327)
+|++++..+. +.+++|.+.+++ .+.++ +.|+ +++.
T Consensus 132 ---~i~~s~g~l~~e~l~~L~~ag~~-~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~ 207 (348)
T 3iix_A 132 ---AVTLSLGEWPREYYEKWKEAGAD-RYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTI 207 (348)
T ss_dssp ---EEEEECCCCCHHHHHHHHHHTCC-EEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCH
T ss_pred ---eEEEecCCCCHHHHHHHHHhCCC-EEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCH
Confidence 7776544443 457778776542 22222 6777 7899
Q ss_pred HHHHHHHHHHHhcCCcceEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHh
Q 043340 231 EHAVELAELLHEWGRGHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGALES 279 (327)
Q Consensus 231 e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L~~ 279 (327)
+++.++++++++++ ...+++.||+|.++.++ .+++.++..+...+++.
T Consensus 208 e~~~~~~~~l~~l~-~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~ 258 (348)
T 3iix_A 208 DDLVDDLLFLKEHD-FDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRI 258 (348)
T ss_dssp HHHHHHHHHHHHHT-CSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999986 46789999999887654 45666766665555553
No 9
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.55 E-value=3.5e-14 Score=123.36 Aligned_cols=120 Identities=21% Similarity=0.295 Sum_probs=94.2
Q ss_pred cceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec---------------
Q 043340 160 VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR--------------- 222 (327)
Q Consensus 160 v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS--------------- 222 (327)
-.+|+|+| ||||++++.+.++++.+++ .|+ +++++|||+. +.+++|.+. .+ .+.+|
T Consensus 4 ~~~v~~tG-GEPll~~~~~~~l~~~~~~-~g~---~~~l~TNG~l~~~~~~~l~~~-~d-~v~isld~~~~~~~~~~~g~ 76 (182)
T 3can_A 4 GGGVTFCG-GEPLLHPEFLIDILKRCGQ-QGI---HRAVDTTLLARKETVDEVMRN-CE-LLLIDLKSMDSTVHQTFCDV 76 (182)
T ss_dssp CCCEEECS-STGGGSHHHHHHHHHHHHH-TTC---CEEEECTTCCCHHHHHHHHHT-CS-EEEEECCCSCHHHHHHHHSS
T ss_pred CCEEEEEc-ccccCCHHHHHHHHHHHHH-CCC---cEEEECCCCCCHHHHHHHHhh-CC-EEEEECCCCCHHHHHHHhCC
Confidence 46899999 9999998877899999974 588 8999999984 346777764 22 23333
Q ss_pred -------------------------ccCCCCcHHHHHHHHHHHHhc-CCcceEEEEeccCCCCCC------------CCC
Q 043340 223 -------------------------SAGVNDQVEHAVELAELLHEW-GRGHHVNLIPFNPIEGSD------------YQR 264 (327)
Q Consensus 223 -------------------------I~GvND~~e~a~~L~~~l~~l-~~~~~vnLIp~np~~~~~------------~~~ 264 (327)
++|+||+.+++.+++++++.+ +....++++||+|.+... +++
T Consensus 77 ~~~~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~ 156 (182)
T 3can_A 77 PNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKM 156 (182)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC------------------CC
T ss_pred CHHHHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcccCCCC
Confidence 889999999999999999997 522689999999976432 356
Q ss_pred CcHHH--HHHHHHHHHhCCCeEEE
Q 043340 265 PYKKA--VLAFAGALESHKITTSI 286 (327)
Q Consensus 265 p~~e~--i~~f~~~L~~~gi~v~v 286 (327)
|+.++ +++++++++++|+.+++
T Consensus 157 ~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 157 QTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp BCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHcCCceEe
Confidence 77777 99999999999999887
No 10
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.30 E-value=2.3e-10 Score=110.25 Aligned_cols=155 Identities=13% Similarity=0.199 Sum_probs=113.0
Q ss_pred EE-ecCCCCCCCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-CCc-CChhhHHHHHHHhhh
Q 043340 116 VS-SQVGCPLRCSFCATGKG---G--FSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-EPM-LNLKSVLEAHRCLNK 187 (327)
Q Consensus 116 Vs-sq~GCnl~C~fC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-EPl-ln~~~v~~~i~~l~~ 187 (327)
++ .+.|||++|.||..+.. + ..+.++++||++.+....+ .+++.|.|.|.| ||. ++++.+.++++.+++
T Consensus 69 i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~ 145 (369)
T 1r30_A 69 LSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA---AGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA 145 (369)
T ss_dssp EEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH---TTCSEEEEEECCSSCCTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHH---cCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHH
Confidence 44 37899999999998642 1 2356899999998876654 368899998843 455 567889999999975
Q ss_pred ccCCCCccEEEEcCCcH--HHHHHHHhcCCCcceeec--------------------------------------ccCCC
Q 043340 188 DVQIGQRMITISTVGVP--NTIKKLASYKLQSTLAIR--------------------------------------SAGVN 227 (327)
Q Consensus 188 ~~gi~~r~itisTnG~~--~~i~~L~~~~~~v~lavS--------------------------------------I~GvN 227 (327)
.|+ .+++ |||.. +.++.|.+.|++ .+.++ |.|++
T Consensus 146 -~g~---~i~~-t~G~l~~e~l~~L~~aGvd-~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~ 219 (369)
T 1r30_A 146 -MGL---EACM-TLGTLSESQAQRLANAGLD-YYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 219 (369)
T ss_dssp -TTS---EEEE-ECSSCCHHHHHHHHHHCCC-EEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSS
T ss_pred -cCC---eEEE-ecCCCCHHHHHHHHHCCCC-EEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCC
Confidence 477 6775 89974 457888777542 22211 88999
Q ss_pred CcHHHHHHHHHHHHhcCC-cceEEEEeccCCCCCCC---CCCcHHHHHHHHHHHHh
Q 043340 228 DQVEHAVELAELLHEWGR-GHHVNLIPFNPIEGSDY---QRPYKKAVLAFAGALES 279 (327)
Q Consensus 228 D~~e~a~~L~~~l~~l~~-~~~vnLIp~np~~~~~~---~~p~~e~i~~f~~~L~~ 279 (327)
++.+++.+++++++.++. ...+.+.+|.|.++.++ .+++.+++.+..++++.
T Consensus 220 et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
T 1r30_A 220 ETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARI 275 (369)
T ss_dssp CCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999998751 24677778888877654 56778877777666654
No 11
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.23 E-value=3.2e-10 Score=106.63 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=89.1
Q ss_pred eeEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC------hhhHHHHHH
Q 043340 111 RLTACVSSQVGCPLRCSFCATGKG-GFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN------LKSVLEAHR 183 (327)
Q Consensus 111 r~tlcVssq~GCnl~C~fC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln------~~~v~~~i~ 183 (327)
+.+++|.++.|||++|.||..+.. +..+..++++|++++..+.+ .+++.|+|+| +++... .+.+.++++
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~---~G~~ei~l~g-~~~~~yG~~~~~~~~l~~Ll~ 78 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLK---EGKKEIILVA-QDTTSYGIDLYRKQALPDLLR 78 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHH---TTCCEEEEEC-TTGGGTTHHHHSSCCHHHHHH
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHH---CCCcEEEEEe-EcccccCCCCCcHHHHHHHHH
Confidence 467899999999999999998753 44578999999999987654 3688999998 555432 356888888
Q ss_pred HhhhccCCCCccEEE-EcCCc--HH-HHHHHHhcC--CCcceeec-----------------------------------
Q 043340 184 CLNKDVQIGQRMITI-STVGV--PN-TIKKLASYK--LQSTLAIR----------------------------------- 222 (327)
Q Consensus 184 ~l~~~~gi~~r~iti-sTnG~--~~-~i~~L~~~~--~~v~lavS----------------------------------- 222 (327)
.+++..|+ ..+.+ +||+. .+ .++.|.+.+ . ..+.++
T Consensus 79 ~l~~~~gi--~~ir~~~~~p~~l~~e~l~~l~~~g~~~-~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi 155 (304)
T 2qgq_A 79 RLNSLNGE--FWIRVMYLHPDHLTEEIISAMLELDKVV-KYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDA 155 (304)
T ss_dssp HHHTSSSS--CEEEECCCCGGGCCHHHHHHHHHCTTBC-CEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcCCC--cEEEEeeeecccCCHHHHHHHHhCCCCc-cEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC
Confidence 88643355 24655 35653 23 467776654 1 122222
Q ss_pred ------ccCC-CCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC
Q 043340 223 ------SAGV-NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD 261 (327)
Q Consensus 223 ------I~Gv-ND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~ 261 (327)
|-|+ +++++++.++.++++.++ ...+++.||.|.++.+
T Consensus 156 ~i~~~~IvG~PgEt~ed~~~t~~~l~~l~-~~~v~~~~~~p~pgT~ 200 (304)
T 2qgq_A 156 VLRTSIIVGFPGETEEDFEELKQFVEEIQ-FDKLGAFVYSDEEGTV 200 (304)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHC-CSEEEEEECCC-----
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEEEeeCCCCCh
Confidence 4454 578899999999999986 4689999999988754
No 12
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=98.75 E-value=1.8e-07 Score=92.71 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=109.1
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCC-CCC---CCCHHHHHHHHHHHHHHhc-CCcceEEEeeCCCCcC-ChhhHHHHHHHh
Q 043340 112 LTACVSSQVGCPLRCSFCATGKGG-FSR---NLSSHEIVGQVLAIEEIFK-HRVTNVVFMGMGEPML-NLKSVLEAHRCL 185 (327)
Q Consensus 112 ~tlcVssq~GCnl~C~fC~t~~~~-~~r---~lt~~EIv~qv~~~~~~~~-~~v~~Ivf~G~GEPll-n~~~v~~~i~~l 185 (327)
.+++|-. .+|+.+|.||...... ..+ ...++.+++++....+.+. ..+..|.|.| |+|++ +.+.+.++++.+
T Consensus 53 ~~lYihI-pfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgG-Gtpt~l~~~~l~~ll~~i 130 (457)
T 1olt_A 53 LSLYVHI-PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGG-GTPTYLNKAQISRLMKLL 130 (457)
T ss_dssp EEEEEEE-CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEE-SCGGGSCHHHHHHHHHHH
T ss_pred eEEEEEc-CCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCcccCCHHHHHHHHHHH
Confidence 5666655 3699999999975431 111 1235667777765543322 2477888888 99984 778899999988
Q ss_pred hhccCCC-CccEEEEcCCc---HHHHHHHHhcCCCcceeec---------------------------------------
Q 043340 186 NKDVQIG-QRMITISTVGV---PNTIKKLASYKLQSTLAIR--------------------------------------- 222 (327)
Q Consensus 186 ~~~~gi~-~r~itisTnG~---~~~i~~L~~~~~~v~lavS--------------------------------------- 222 (327)
++.++++ ...++++||+- .+.++.|.+.|.. .+.++
T Consensus 131 ~~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~-rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~d 209 (457)
T 1olt_A 131 RENFQFNADAEISIEVDPREIELDVLDHLRAEGFN-RLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNID 209 (457)
T ss_dssp HHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCC-EEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred HHhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCC-EEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 7644331 12688999874 2356777766531 22221
Q ss_pred -ccCC-CCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCC--------CCCCcHHH----HHHHHHHHHhCCCeE
Q 043340 223 -SAGV-NDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSD--------YQRPYKKA----VLAFAGALESHKITT 284 (327)
Q Consensus 223 -I~Gv-ND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~--------~~~p~~e~----i~~f~~~L~~~gi~v 284 (327)
|-|+ .++.+++.+.++++..++ ..++.+.+|.+.++.. +..|++++ .+.+.+.|.+.|...
T Consensus 210 lI~GlPget~e~~~~tl~~~~~l~-~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 284 (457)
T 1olt_A 210 LIYGLPKQTPESFAFTLKRVAELN-PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQF 284 (457)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHC-CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcC-cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeE
Confidence 2233 466889999999999987 4788888888766532 23455443 445667788888764
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.17 E-value=0.00057 Score=65.89 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=71.5
Q ss_pred EEecCCCCCCCCCCCCC-CCCCC----CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChh----hHHHHHHHhh
Q 043340 116 VSSQVGCPLRCSFCATG-KGGFS----RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLK----SVLEAHRCLN 186 (327)
Q Consensus 116 Vssq~GCnl~C~fC~t~-~~~~~----r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~----~v~~~i~~l~ 186 (327)
++.-.||.++|.||+.. ..+.. -....+|+++++....+..+.....|.+.++.+|+ ..+ .+.++++.+.
T Consensus 111 ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpy-p~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 111 IPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIV-GIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp CCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHH-HHHTTTCHHHHHHHHHH
T ss_pred eCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcc-hhhHHHhHHHHHHHHHH
Confidence 34457999999999963 11221 13557899998765433222233345454567886 333 3566777775
Q ss_pred hccCCCCccEEEEcCCc-HHHHHHHHhcCCCcceeecccC---------CCCc-HHHHHHHHHHHHhcCCcceEEEEecc
Q 043340 187 KDVQIGQRMITISTVGV-PNTIKKLASYKLQSTLAIRSAG---------VNDQ-VEHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 187 ~~~gi~~r~itisTnG~-~~~i~~L~~~~~~v~lavSI~G---------vND~-~e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
+..+. .+++.|=+. ++.+..+...+ .+.+++||.- -..+ .+-++.+. -+.+.+..+.+.+-|.-
T Consensus 190 ~~~~~---~v~i~TKs~lid~L~~l~~~~-~v~V~~Sitt~~l~r~~EP~aps~~~RL~Ai~-~l~~aGipv~v~iaPIi 264 (368)
T 4fhd_A 190 ATDYG---RLRFVTKYEHVDHLLDARHNG-KTRFRFSINSRYVINHFEPGTSSFDGRLAAAR-KVAGAGYKLGFVVAPIY 264 (368)
T ss_dssp HCSSE---EEEEEESCCCCGGGTTCCCTT-CEEEEEEECCHHHHHHHCTTSCCHHHHHHHHH-HHHHTTCEEEEEEEEEC
T ss_pred hCCCc---eEEEEeCCcCHHHHHhcCcCC-ceEEEEEEcCHHHHHHcCCCCCCHHHHHHHHH-HHHHCCCeEEEEEeCcC
Confidence 42233 688888654 23232222222 3455566321 1111 22233333 33344555677777777
Q ss_pred CC
Q 043340 256 PI 257 (327)
Q Consensus 256 p~ 257 (327)
|.
T Consensus 265 P~ 266 (368)
T 4fhd_A 265 RH 266 (368)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 14
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=65.41 E-value=42 Score=31.13 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee--CCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCc
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG--MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV 203 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G--~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~ 203 (327)
=.+|++||+++.....+. +..+-++..=. -|.|...++...+++..+++..++ -|.++|.|.
T Consensus 27 lPvTpeEia~~A~~~~~A-GAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d~---iI~~TTgg~ 90 (314)
T 3lot_A 27 LPVTPDQIVEEAVKAAEA-GAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSDV---VINVTTGGG 90 (314)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCC---EEEECSSTT
T ss_pred CCCCHHHHHHHHHHHHHc-CCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCCe---EEEeCCCCc
Confidence 358999999998876553 45566666655 388999998889999999765555 688988874
No 15
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=64.74 E-value=80 Score=28.41 Aligned_cols=128 Identities=8% Similarity=0.071 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC--hhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN--LKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQ 216 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln--~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~ 216 (327)
..+.+++++++....+ .+.+-|-+ | ||+... .+.+..+++.+++..++ .+.|.|.= ...++.-++.-.+
T Consensus 30 ~~~~~~a~~~a~~~v~---~GAdiIDI-g-~~s~~~eE~~rv~~vi~~l~~~~~~---pisIDT~~-~~v~~aal~a~~G 100 (271)
T 2yci_X 30 NKDPRPIQEWARRQAE---KGAHYLDV-N-TGPTADDPVRVMEWLVKTIQEVVDL---PCCLDSTN-PDAIEAGLKVHRG 100 (271)
T ss_dssp TTCCHHHHHHHHHHHH---TTCSEEEE-E-CCSCSSCHHHHHHHHHHHHHHHCCC---CEEEECSC-HHHHHHHHHHCCS
T ss_pred hCCHHHHHHHHHHHHH---CCCCEEEE-c-CCcCchhHHHHHHHHHHHHHHhCCC---eEEEeCCC-HHHHHHHHHhCCC
Confidence 3455777777766553 35555555 5 555333 45677777777655577 79999862 2334444444113
Q ss_pred cceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHH---HHHHHHHHHhCCCe
Q 043340 217 STLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA---VLAFAGALESHKIT 283 (327)
Q Consensus 217 v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~---i~~f~~~L~~~gi~ 283 (327)
..+-.|+.|.+ +...+++++++..+ +.+-++++.+.+. ...-.+. +++..+.+.+.|++
T Consensus 101 a~iINdvs~~~---d~~~~~~~~~a~~~--~~vv~m~~d~~G~---p~t~~~~~~~l~~~~~~a~~~Gi~ 162 (271)
T 2yci_X 101 HAMINSTSADQ---WKMDIFFPMAKKYE--AAIIGLTMNEKGV---PKDANDRSQLAMELVANADAHGIP 162 (271)
T ss_dssp CCEEEEECSCH---HHHHHHHHHHHHHT--CEEEEESCBTTBC---CCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCc---cccHHHHHHHHHcC--CCEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 45666666653 34566777777765 5666666532221 1112233 34445556778886
No 16
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=63.67 E-value=7.7 Score=30.62 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=39.7
Q ss_pred eEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCC---eEEEcCCCCc------ccccccchhhh
Q 043340 248 HVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI---TTSIRQTRGL------DASAACGQLRN 303 (327)
Q Consensus 248 ~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi---~v~vR~~~G~------di~aaCGqL~~ 303 (327)
.+.-||.+.+.....+.-+++.++++.+.+++.|+ +++||...|. .+-++|+.|++
T Consensus 13 ~v~~IPi~~I~~p~~~~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~hRl~A 77 (110)
T 1xw3_A 13 AVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAA 77 (110)
T ss_dssp EEEEEEGGGEECCSCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHH
T ss_pred eEEEeCHHHccCCCCCccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcchHHHHH
Confidence 45567777655333346789999999999999985 5788864332 56677777764
No 17
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=63.18 E-value=95 Score=28.73 Aligned_cols=128 Identities=11% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCC---CcCC--------hhh---HHHHHHHhhhccCCCCccEEEEcCCc
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGE---PMLN--------LKS---VLEAHRCLNKDVQIGQRMITISTVGV 203 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GE---Plln--------~~~---v~~~i~~l~~~~gi~~r~itisTnG~ 203 (327)
+..+++++++++....+ .+-+-|-+ | || |-.. .++ +..+++.+++..++ .|.|+|.=.
T Consensus 44 ~~~~~~~al~~A~~~v~---~GAdIIDI-G-geSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~v---pISIDT~~~ 115 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVD---EGADILDI-G-GEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQ---LISVDTSRP 115 (314)
T ss_dssp BCCSHHHHHHHHHHHHH---TTCSEEEE-E-CCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCS---EEEEECSCH
T ss_pred ccCCHHHHHHHHHHHHH---CCCCEEEE-C-CCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCC---eEEEeCCCH
Confidence 66788999998877654 35554554 5 55 3322 122 56666766555577 799999532
Q ss_pred HHHHHHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCc----H---HHHHHHHHH
Q 043340 204 PNTIKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPY----K---KAVLAFAGA 276 (327)
Q Consensus 204 ~~~i~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~----~---e~i~~f~~~ 276 (327)
..++.-++.| ..+--||.|.++. ++++++++.+ +.+-+++..-.+...-..|. . +.+++-.+.
T Consensus 116 -~Va~aAl~aG--a~iINDVsg~~~~-----~m~~v~a~~g--~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~ 185 (314)
T 3tr9_A 116 -RVMREAVNTG--ADMINDQRALQLD-----DALTTVSALK--TPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQR 185 (314)
T ss_dssp -HHHHHHHHHT--CCEEEETTTTCST-----THHHHHHHHT--CCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcC--CCEEEECCCCCch-----HHHHHHHHhC--CeEEEECCCCCCcccccccccchHHHHHHHHHHHHHH
Confidence 2344444554 4577778887753 4556666655 45556654322222112222 1 223344455
Q ss_pred HHhCCCe
Q 043340 277 LESHKIT 283 (327)
Q Consensus 277 L~~~gi~ 283 (327)
+.++|+.
T Consensus 186 a~~~GI~ 192 (314)
T 3tr9_A 186 CKKAGIS 192 (314)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 6778985
No 18
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=62.98 E-value=57 Score=30.17 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee--CCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCc
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG--MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV 203 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G--~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~ 203 (327)
=.+|++||+++.....+. +..+-++..=. -|.|...++...+++..+++...+ -|.++|.|.
T Consensus 27 lPvTpeEia~~A~~~~~A-GAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~---iI~~TTgg~ 90 (311)
T 3e49_A 27 LPVTPDEVAQASIGAAEA-GAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDA---VINLTTGGS 90 (311)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCC---EEEECSCSC
T ss_pred CCCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc---EEEECCCCC
Confidence 358999999998876553 45566666655 388999988888888888765444 577888775
No 19
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=60.11 E-value=23 Score=32.33 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=33.6
Q ss_pred HHHHHhcCCCcceeec-ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 207 IKKLASYKLQSTLAIR-SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 207 i~~L~~~~~~v~lavS-I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
++.+.+.++.+.+.+- ++|.|++ ++.+++++++.++ ..+.+++|.|.++
T Consensus 152 i~~l~~~g~~v~i~~vv~~g~n~~--ei~~~~~~~~~~g--~~~~~i~~~p~~~ 201 (340)
T 1tv8_A 152 IDYATSIGLNVKVNVVIQKGINDD--QIIPMLEYFKDKH--IEIRFIEFMDVGN 201 (340)
T ss_dssp HHHHHHTTCEEEEEEEECTTTTGG--GHHHHHHHHHHTT--CCEEEEECCCBCS
T ss_pred HHHHHHCCCCEEEEEEEeCCCCHH--HHHHHHHHHHhcC--CeEEEEEeeEcCC
Confidence 4555555543333221 6788874 6999999999976 4588888888764
No 20
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=59.99 E-value=53 Score=30.37 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee--CCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCc
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG--MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV 203 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G--~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~ 203 (327)
=.+|++||+++.....+. +..+-++..=. -|.|...++...+++..+++..++ -|.++|.|.
T Consensus 27 lPvTpeEia~~A~~~~~A-GAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~---iI~~TTgg~ 90 (311)
T 3e02_A 27 LPITPEEIVKEGVAAAEA-GAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDA---ILNITTGGG 90 (311)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCC---EEEECSSCS
T ss_pred CCCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc---EEEECCCCC
Confidence 358999999998876553 45566666655 388999988888888888765444 578888775
No 21
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=59.51 E-value=97 Score=27.64 Aligned_cols=130 Identities=8% Similarity=0.021 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCC-cCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCC
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP-MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQ 216 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEP-lln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~ 216 (327)
+..+.+++++++....+ .+-+-|-+-| |-+ --..+.+.+++..+.+..++ .+.|.|.= ...++.-++.-.+
T Consensus 20 ~~~~~~~a~~~a~~~v~---~GAdiIDIg~-g~~~v~~~ee~~rvv~~i~~~~~~---pisIDT~~-~~v~~aAl~a~~G 91 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEE---GGARALDLNV-GPAVQDKVSAMEWLVEVTQEVSNL---TLCLDSTN-IKAIEAGLKKCKN 91 (262)
T ss_dssp HHTCHHHHHHHHHHHHH---HTCSEEEEBC-C----CHHHHHHHHHHHHHTTCCS---EEEEECSC-HHHHHHHHHHCSS
T ss_pred hcCCHHHHHHHHHHHHH---CCCcEEEECC-CCCCCChHHHHHHHHHHHHHhCCC---eEEEeCCC-HHHHHHHHhhCCC
Confidence 34567777777766554 2556666655 533 33445677777777644466 78898862 2234443443013
Q ss_pred cceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHH---HHHHHHHHHhCCCe
Q 043340 217 STLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKA---VLAFAGALESHKIT 283 (327)
Q Consensus 217 v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~---i~~f~~~L~~~gi~ 283 (327)
..+--|+.|. .+..++++++++..+ +.+-+++++..+. +..-.+. +++..+.+.+.|+.
T Consensus 92 a~iINdvs~~---~d~~~~~~~~~a~~~--~~vvlmh~~~~G~---p~t~~~~~~~~~~~~~~a~~~Gi~ 153 (262)
T 1f6y_A 92 RAMINSTNAE---REKVEKLFPLAVEHG--AALIGLTMNKTGI---PKDSDTRLAFAMELVAAADEFGLP 153 (262)
T ss_dssp CEEEEEECSC---HHHHHHHHHHHHHTT--CEEEEESCCSSCS---CSSHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEECCCC---cccHHHHHHHHHHhC--CcEEEEcCCCCCC---CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 4565666664 355667788888865 5666666532211 1111222 23444556677875
No 22
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=57.41 E-value=57 Score=29.58 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee-CCCCcCChhhHHHHHHHhhhcc-CCCCccEEEEcCCcHHHHH-H--HHh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGEPMLNLKSVLEAHRCLNKDV-QIGQRMITISTVGVPNTIK-K--LAS 212 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GEPlln~~~v~~~i~~l~~~~-gi~~r~itisTnG~~~~i~-~--L~~ 212 (327)
=.+|++||+++.....+. +..+-++..=. .|.|.+.++...+++..+++.. ++ -|.++|.|.....+ + +.+
T Consensus 25 lPvTpeEia~~A~~~~~A-GAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~---ii~~Ttg~~~~~~e~R~~~~~ 100 (275)
T 3no5_A 25 VPITVSEQVESTQAAFEA-GATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGM---ITQVSTGGRSGAGNERGAMLS 100 (275)
T ss_dssp SCCSHHHHHHHHHHHHHH-TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTC---EEEECCCCCTTCCGGGGTTGG
T ss_pred CCCCHHHHHHHHHHHHHc-cCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCe---EEEeCCCCCCCCHHHHhhHhh
Confidence 358999999998876553 44444554443 3889999988999999997653 56 67888877532111 1 111
Q ss_pred cCCCcceeecccCCC--C-----cHHHHHHHHHHHHhcCCcceEEEEeccC
Q 043340 213 YKLQSTLAIRSAGVN--D-----QVEHAVELAELLHEWGRGHHVNLIPFNP 256 (327)
Q Consensus 213 ~~~~v~lavSI~GvN--D-----~~e~a~~L~~~l~~l~~~~~vnLIp~np 256 (327)
..++ -.++++..+| | +++.++++++.+++.+ .+..+.=|.+
T Consensus 101 ~~Pe-~aSl~~gs~Nf~~~v~~N~~~~~~~~~~~~~e~G--i~pE~e~fd~ 148 (275)
T 3no5_A 101 LRPD-MASLATGSVNFPTRVYDNPPELVDWLAAEMKTYG--IKPEVEAFDL 148 (275)
T ss_dssp GCCS-EEEEECSCEECSSSEECCCHHHHHHHHHHHHHTT--CEEEEEESST
T ss_pred cCCC-EEEecCcccccccccccCCHHHHHHHHHHHHHcC--CeeEEEEEcH
Confidence 1111 1222222122 2 4678888888887755 4555544543
No 23
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=50.82 E-value=67 Score=29.43 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+.... ..++++|+..| .|| |.+..++-.++++.+.+
T Consensus 29 ~iD~~~l~~lv~~li---~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~ 76 (316)
T 3e96_A 29 SIDWHHYKETVDRIV---DNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVE 76 (316)
T ss_dssp CBCHHHHHHHHHHHH---TTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HcCCCEEEeCccccCcccCCHHHHHHHHHHHHH
Confidence 466655555554443 35899999988 488 88888777777776654
No 24
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=50.82 E-value=1.4e+02 Score=26.82 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ ..++++|+..| .|| |.+..++-.++++...+..+ ++-.+-+.|.+
T Consensus 20 ~iD~~~l~~lv~~li~--~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg~ 82 (293)
T 1f6k_A 20 TINEKGLRQIIRHNID--KMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVGS 82 (293)
T ss_dssp CBCHHHHHHHHHHHHH--TSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECCC
T ss_pred CcCHHHHHHHHHHHHh--hCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEecCC
Confidence 4666555555544432 04799999998 489 88888877777777654321 11145555544
No 25
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=49.96 E-value=1.3e+02 Score=27.82 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee--CCCCcCChhhHHHHHHHhhhc-cCCCCccEEEEcC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG--MGEPMLNLKSVLEAHRCLNKD-VQIGQRMITISTV 201 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G--~GEPlln~~~v~~~i~~l~~~-~gi~~r~itisTn 201 (327)
.+|++||+++.....+. +..+-++..=. -|.|...++...+++..+++. -++ -|.++|.
T Consensus 44 PvTpeEIa~~A~~a~~A-GAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~---ii~~TTg 105 (316)
T 3c6c_A 44 PITPAQIADACVEAAKA-GASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDI---VLNLTCG 105 (316)
T ss_dssp CCSHHHHHHHHHHHHHH-TCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCC---EEEEECC
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCe---EEEeCCC
Confidence 48999999998876553 44555555544 388999999999999999754 466 7889996
No 26
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=49.48 E-value=1.5e+02 Score=26.83 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+
T Consensus 32 ~iD~~~l~~lv~~li~---~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~ 79 (304)
T 3l21_A 32 SLDTATAARLANHLVD---QGCDGLVVSGTTGESPTTTDGEKIELLRAVLE 79 (304)
T ss_dssp CBCHHHHHHHHHHHHH---TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEeCccccchhhCCHHHHHHHHHHHHH
Confidence 4666666665555543 58999999994 99 78888877777777654
No 27
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=49.40 E-value=37 Score=25.84 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 228 DQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 228 D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
+...++.+|.++++..+...-|--+|.|..+. ..+..+.+.+|.+.|++.+++|..-+++.+
T Consensus 35 ~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt---~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 35 TLEEDVEALLDFVRREGLGKLVVGLPLRTDLK---ESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCCCSS---SCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeeccCCCCC---cCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 34678899999998866444444578775432 345567889999999876888887776654
No 28
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=49.35 E-value=1.6e+02 Score=26.93 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|+..| .|| |.+..++-.++++...+
T Consensus 41 ~iD~~~l~~lv~~li~---~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~ 88 (315)
T 3na8_A 41 GLDLPALGRSIERLID---GGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLK 88 (315)
T ss_dssp SBCHHHHHHHHHHHHH---TTCSEEECSSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 4666666665555543 5899999999 489 88888777777776654
No 29
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=48.14 E-value=1.6e+02 Score=26.88 Aligned_cols=110 Identities=9% Similarity=0.113 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee--CCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCC
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG--MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL 215 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G--~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~ 215 (327)
...+.+.|.+.+...++.++ ++.|-++= .-+|....+.+.++++.+++. |. .|.|.||+. ....++++.+...
T Consensus 117 ~~~~~~~i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~-Gk-ir~iGvSn~-~~~~l~~~~~~~~ 191 (348)
T 3n2t_A 117 RDSRPARIRKEVEDSLRRLR--VETIDLEQIHWPDDKTPIDESARELQKLHQD-GK-IRALGVSNF-SPEQMDIFREVAP 191 (348)
T ss_dssp ECCCHHHHHHHHHHHHHHHT--CSSEEEEEESSCCTTSCHHHHHHHHHHHHHT-TS-EEEEEEESC-CHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHhC--CCcEEEEEecCCCCCCCHHHHHHHHHHHHHh-Cc-ceEEecCCC-CHHHHHHHHHhCC
Confidence 45778899998888877764 33333333 244444556777888877653 54 467888765 3445666665532
Q ss_pred CcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC
Q 043340 216 QSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258 (327)
Q Consensus 216 ~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~ 258 (327)
...+.+.+.=++... -.++.++++.. .+.++.|.|..
T Consensus 192 ~~~~Q~~~nl~~~~~--e~~l~~~~~~~----gi~v~a~spL~ 228 (348)
T 3n2t_A 192 LATIQPPLNLFERTI--EKDILPYAEKH----NAVVLAYGALC 228 (348)
T ss_dssp CCEEECBCBTTBCGG--GGTHHHHHHHH----TCEEEEBCTTG
T ss_pred ccEEEeeecCccCch--HHHHHHHHHHc----CCeEEEeeccc
Confidence 212222211122211 13577788774 36678999875
No 30
>4dsd_A Putative periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.75A {Bacteroides ovatus}
Probab=47.56 E-value=34 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEecCCCeEE
Q 043340 50 PRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIE 97 (327)
Q Consensus 50 ~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE 97 (327)
++.||...++.++.+ |+-.....+.+......+..|-+.|.||..||
T Consensus 9 ~~~LP~~a~~fi~~~-Fp~~~i~~ve~e~~~~~~~~YeV~l~~G~ei~ 55 (129)
T 4dsd_A 9 MNQLPLPARNFINSN-FTKPQVAHIKIDKDMMESTKYEVVLMDGTEID 55 (129)
T ss_dssp GGGSCHHHHHHHHHH-SSSCCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred hhhCCHHHHHHHHHH-CCCCceEEEEEecCcCCCccEEEEECCCcEEE
Confidence 567999999999999 66554333333222112378999999996544
No 31
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=47.21 E-value=1.3e+02 Score=27.39 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCCCcCChhhHHHHHHHhhhc-cCCCCccEEEEcCCcHH--HHHHHHh--
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGEPMLNLKSVLEAHRCLNKD-VQIGQRMITISTVGVPN--TIKKLAS-- 212 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GEPlln~~~v~~~i~~l~~~-~gi~~r~itisTnG~~~--~i~~L~~-- 212 (327)
.+|++||+++.....+. +..+-++..=. -|.|...++...+++..+++. -++ -|.++|.|... .-+++..
T Consensus 30 PvTpeEia~~A~~a~~A-GAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~---ii~~TTg~~~~~~~eeR~~~~~ 105 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEA-GARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEI---IIQISTGGAVGESFDKRLAPLA 105 (282)
T ss_dssp CCSHHHHHHHHHHHHHH-TEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTS---EEEECSSCSTTCCHHHHHGGGG
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCe---EEEeCCCCCCCCCHHHHHHHhh
Confidence 48999999998876553 22232222221 388999999899999999754 366 78899966521 1222222
Q ss_pred cCCCcceeecccC-------CCCcHHHHHHHHHHHHhcCCcceEEEEecc
Q 043340 213 YKLQSTLAIRSAG-------VNDQVEHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 213 ~~~~v~lavSI~G-------vND~~e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
..++ -.++++.. +..+++.++++++.+++.+ .+..+.=|.
T Consensus 106 ~~Pe-~asl~~gs~Nf~~~v~~n~~~~~~~~~~~~~e~G--v~pE~e~fd 152 (282)
T 2y7e_A 106 LKPE-MATLNAGTLNFGDDIFINHPADIIRLAEAFKQYN--VVPEVEVYE 152 (282)
T ss_dssp GCCS-EEEEECCCEEETTEEECCCHHHHHHHHHHHHHTT--CEEEEEECS
T ss_pred cCCC-EEEecccccccccccccCCHHHHHHHHHHHHHcC--CeEEEEEEC
Confidence 2121 12222211 1234678888888888765 455544454
No 32
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=46.77 E-value=20 Score=28.69 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=39.3
Q ss_pred ceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCC---eEEEcCCCCc------ccccccchhhh
Q 043340 247 HHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKI---TTSIRQTRGL------DASAACGQLRN 303 (327)
Q Consensus 247 ~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi---~v~vR~~~G~------di~aaCGqL~~ 303 (327)
..|.-||...+.....+.-+++.++++.+.++..|+ +++||...|. +..++|+.|.+
T Consensus 23 ~~i~~IPl~~I~~p~~r~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~hRleA 88 (121)
T 1yzs_A 23 AAVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAA 88 (121)
T ss_dssp CCEEEEEGGGEECCCCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHH
T ss_pred ceEEEeeHHHeeCCCCCcCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEEecchHHHH
Confidence 456778888765544556789999999999998876 4677754433 44566666643
No 33
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=46.39 E-value=1.7e+02 Score=26.66 Aligned_cols=132 Identities=8% Similarity=0.023 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCCh-hhHHHHHHHhh---hccCCCCccEEEEcCCcHHHHHHHHhc
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNL-KSVLEAHRCLN---KDVQIGQRMITISTVGVPNTIKKLASY 213 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~-~~v~~~i~~l~---~~~gi~~r~itisTnG~~~~i~~L~~~ 213 (327)
+..+.+++++++....+ .+-+-|-+-| |.+.... +.+.+++..+. +..++ .|.|.|.= ...++.-++.
T Consensus 32 ~~~~~~~a~~~A~~~v~---~GAdiIDIg~-g~~~v~~~eem~rvv~~i~~~~~~~~v---pisIDT~~-~~V~eaaL~~ 103 (300)
T 3k13_A 32 NEKKYDEALSIARQQVE---DGALVIDVNM-DDGLLDARTEMTTFLNLIMSEPEIARV---PVMIDSSK-WEVIEAGLKC 103 (300)
T ss_dssp HTTCHHHHHHHHHHHHH---TTCSEEEEEC-CCTTSCHHHHHHHHHHHHHTCHHHHTS---CEEEECSC-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH---CCCCEEEECC-CCCCCCHHHHHHHHHHHHHHhhhcCCC---eEEEeCCC-HHHHHHHHHh
Confidence 45567888887776554 4556666655 7776653 34555555553 23456 79999952 2234444441
Q ss_pred CCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHH---HHHHHHHHH-HhCCCe
Q 043340 214 KLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKK---AVLAFAGAL-ESHKIT 283 (327)
Q Consensus 214 ~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e---~i~~f~~~L-~~~gi~ 283 (327)
-.+..+--||.|... .+.+.+++++++..+ +.+-++++...+. ...-.+ -.++..+.+ .++|++
T Consensus 104 ~~Ga~iINdIs~~~~-d~~~~~~~~l~a~~g--a~vV~mh~d~~G~---p~t~~~~~~i~~r~~~~~~~~~Gi~ 171 (300)
T 3k13_A 104 LQGKSIVNSISLKEG-EEVFLEHARIIKQYG--AATVVMAFDEKGQ---ADTAARKIEVCERAYRLLVDKVGFN 171 (300)
T ss_dssp CSSCCEEEEECSTTC-HHHHHHHHHHHHHHT--CEEEEESEETTEE---CCSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCCCEEEeCCcccC-ChhHHHHHHHHHHhC--CeEEEEeeCCCCC---CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 012456666666543 456678888888876 5676776643211 111122 234555555 778984
No 34
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=46.23 E-value=90 Score=28.45 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCCCcCChhhHHHHHHHhhhc-cCCCCccEEEEcCCcHH----HHHHHHh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGEPMLNLKSVLEAHRCLNKD-VQIGQRMITISTVGVPN----TIKKLAS 212 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GEPlln~~~v~~~i~~l~~~-~gi~~r~itisTnG~~~----~i~~L~~ 212 (327)
.+|++||+++.....+. +..+-++..=. .|.|...++...+++..+++. -++ -|.++|.|... .+.-+ .
T Consensus 30 PvTpeEia~~A~~~~~A-GAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~---ii~~TTgg~~~~~eeR~~~~-~ 104 (284)
T 3chv_A 30 PITVSEQVESTQEAFEA-GAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGM---IVQFSTGGRSGAGQARGGML-P 104 (284)
T ss_dssp CCSHHHHHHHHHHHHHH-TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTC---EEEECCCTTTCCGGGGGTTG-G
T ss_pred CCCHHHHHHHHHHHHHc-CCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCe---EEEeCCCCCCCCHHHHHHhh-h
Confidence 48999999998876553 44454554443 388999999899999999754 366 78899966421 12111 1
Q ss_pred cCCCcceeecc-----cC--CCCcHHHHHHHHHHHHhcCCcceEEEEecc
Q 043340 213 YKLQSTLAIRS-----AG--VNDQVEHAVELAELLHEWGRGHHVNLIPFN 255 (327)
Q Consensus 213 ~~~~v~lavSI-----~G--vND~~e~a~~L~~~l~~l~~~~~vnLIp~n 255 (327)
..++ -.++++ +. +..+++.++++++.+++.+ .+..+.=|.
T Consensus 105 ~~Pe-~aSl~~Gs~Nf~~~v~~n~~~~~~~~~~~~~e~G--v~pE~e~fd 151 (284)
T 3chv_A 105 LKPD-MASLSVGSNNFPSRVYENPPDLVDWLAAQMRSYR--VTPEIEAFD 151 (284)
T ss_dssp GCCS-EEEECCSCEECSSSEECCCHHHHHHHHHHHHHHT--CEEEEEESS
T ss_pred cCCC-EEEecCcccccCCccccCCHHHHHHHHHHHHHcC--CEEEEEEEC
Confidence 1111 122222 11 1124788888888888765 455544454
No 35
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=45.32 E-value=1.9e+02 Score=26.75 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
..+..+.+.+.+....+ .++++|+..| .|| |.+..++-.++++.+.+
T Consensus 47 g~ID~~~l~~lv~~li~---~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve 95 (343)
T 2v9d_A 47 GQLDKPGTAALIDDLIK---AGVDGLFFLGSGGEFSQLGAEERKAIARFAID 95 (343)
T ss_dssp SSBCHHHHHHHHHHHHH---TTCSCEEESSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEeCccccChhhCCHHHHHHHHHHHHH
Confidence 35666666665555543 5799999999 489 88888877777777654
No 36
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=45.29 E-value=30 Score=27.50 Aligned_cols=46 Identities=7% Similarity=0.091 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCceeeEEecCCCcEEEEEEecCCCeEE
Q 043340 50 PRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIE 97 (327)
Q Consensus 50 ~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~l~~l~dg~~iE 97 (327)
++.||...++.++.+ |.-.......+. +.++...|-+.+.||..||
T Consensus 10 ~~~LP~~a~~fi~~~-Fp~~~i~~ve~~-~~~~~~~YeV~~~~G~ei~ 55 (127)
T 3db7_A 10 VTQMPQLAQQFIKQH-FSDSKVALAKME-SDFLYKSYEVIFTNGNKVE 55 (127)
T ss_dssp GGGSCHHHHHHHHHH-CTTSCEEEEEEE-EETTEEEEEEEETTSCEEE
T ss_pred hHHcCHHHHHHHHHH-CCCCceEEEEEe-cCCccceEEEEECCCcEEE
Confidence 568999999999999 665443333322 2356689999999997554
No 37
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=42.69 E-value=2.1e+02 Score=26.44 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee----CCCCcCChhh---HHHHHHHhhhcc-CCCCccEEEEcCCcHHHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG----MGEPMLNLKS---VLEAHRCLNKDV-QIGQRMITISTVGVPNTIKK 209 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G----~GEPlln~~~---v~~~i~~l~~~~-gi~~r~itisTnG~~~~i~~ 209 (327)
+..+.+++++++....+ .+-+-|-+-| .|+|.--.++ +..+++.+++.+ ++ .|.|.|.= ...++.
T Consensus 60 ~~~~~~~a~~~A~~~v~---~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~v---pISIDT~~-~~Vaea 132 (318)
T 2vp8_A 60 ATFSDAAARDAVHRAVA---DGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQ---LISVDTWR-AQVAKA 132 (318)
T ss_dssp ----CHHHHHHHHHHHH---TTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTC---EEEEECSC-HHHHHH
T ss_pred ccCCHHHHHHHHHHHHH---CCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCC---eEEEeCCC-HHHHHH
Confidence 45667888888776654 3555555533 2322222233 444466665444 66 79999852 223455
Q ss_pred HHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEec
Q 043340 210 LASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPF 254 (327)
Q Consensus 210 L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~ 254 (327)
-++.| ..+--|+.|.+|. ++++++++.+ +.+-++..
T Consensus 133 Al~aG--a~iINDVsg~~d~-----~m~~vaa~~g--~~vVlmh~ 168 (318)
T 2vp8_A 133 ACAAG--ADLINDTWGGVDP-----AMPEVAAEFG--AGLVCAHT 168 (318)
T ss_dssp HHHHT--CCEEEETTSSSST-----THHHHHHHHT--CEEEEECC
T ss_pred HHHhC--CCEEEECCCCCch-----HHHHHHHHhC--CCEEEECC
Confidence 45554 4577778887742 4556666655 56666654
No 38
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=40.85 E-value=2e+02 Score=25.71 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHHhcC-CcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCCc
Q 043340 139 NLSSHEIVGQVLAIEEIFKH-RVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQS 217 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~-~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~v 217 (327)
..+.+.+.+.+....+.++. .++ +.++-.=+|....+.+.+++..+++. |. .|+|.||... ...++++.+.....
T Consensus 97 ~~~~~~i~~~~~~SL~rL~~dyiD-l~~lH~p~~~~~~~e~~~al~~l~~~-Gk-ir~iGvSn~~-~~~l~~~~~~~~~~ 172 (312)
T 1pyf_A 97 DNSPDFLKKSVDESLKRLNTDYID-LFYIHFPDEHTPKDEAVNALNEMKKA-GK-IRSIGVSNFS-LEQLKEANKDGLVD 172 (312)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSCBS-EEEECSCCSSSCHHHHHHHHHHHHHT-TS-BSCEEEESCC-HHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEE-EEEeCCCCCCCCHHHHHHHHHHHHHC-CC-cCEEEecCCC-HHHHHHHHhhCCce
Confidence 46778888888887777653 233 33333234444556677778777653 54 4689997654 35566666543221
Q ss_pred ceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC
Q 043340 218 TLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG 259 (327)
Q Consensus 218 ~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~ 259 (327)
.+.+...=.+...+ .++.++++.. .+.+++|.|..+
T Consensus 173 ~~Q~~~~~~~~~~e--~~l~~~~~~~----gi~v~a~spL~~ 208 (312)
T 1pyf_A 173 VLQGEYNLLNREAE--KTFFPYTKEH----NISFIPYFPLVS 208 (312)
T ss_dssp EEEEECBTTBCGGG--TTHHHHHHHH----TCEEEEESTTTT
T ss_pred EEeccCCccccchH--HHHHHHHHHc----CCeEEEeccccc
Confidence 22222111222221 2577777774 366789999853
No 39
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=40.01 E-value=2.1e+02 Score=25.79 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CCCcCC-------hhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GEPMLN-------LKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKK 209 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GEPlln-------~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~ 209 (327)
+..+++++++++....+. +.+-|-+-|. ..|-.. .+.+..+++.+++..++ .|+|.|.-. ..++.
T Consensus 33 ~~~~~~~a~~~a~~~v~~---GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~---piSIDT~~~-~va~a 105 (282)
T 1aj0_A 33 THNSLIDAVKHANLMINA---GATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEV---WISVDTSKP-EVIRE 105 (282)
T ss_dssp CCTHHHHHHHHHHHHHHH---TCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCC---EEEEECCCH-HHHHH
T ss_pred ccCCHHHHHHHHHHHHHC---CCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCC---eEEEeCCCH-HHHHH
Confidence 456788999888776553 5555555441 224321 22356666666554577 799999642 34555
Q ss_pred HHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-----CCCCCc---HHHHHHHHHHHHhCC
Q 043340 210 LASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-----DYQRPY---KKAVLAFAGALESHK 281 (327)
Q Consensus 210 L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-----~~~~p~---~e~i~~f~~~L~~~g 281 (327)
-++.| ..+--|+.|.+|. ++++++++.+ +.+-+++..-.+.. .|...- .+.+++-.+.+.+.|
T Consensus 106 Al~aG--a~iINdvsg~~d~-----~~~~~~a~~~--~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~G 176 (282)
T 1aj0_A 106 SAKVG--AHIINDIRSLSEP-----GALEAAAETG--LPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAG 176 (282)
T ss_dssp HHHTT--CCEEEETTTTCST-----THHHHHHHHT--CCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcC--CCEEEECCCCCCH-----HHHHHHHHhC--CeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcC
Confidence 55554 4566677776553 3455566654 45555554311211 122221 233444555567789
Q ss_pred Ce
Q 043340 282 IT 283 (327)
Q Consensus 282 i~ 283 (327)
+.
T Consensus 177 i~ 178 (282)
T 1aj0_A 177 IA 178 (282)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 40
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=39.95 E-value=2.2e+02 Score=25.92 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+..+ ++-.+.+.|.+
T Consensus 40 ~iD~~~l~~lv~~li~---~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-grvpViaGvg~ 101 (314)
T 3qze_A 40 RLDWDSLAKLVDFHLQ---EGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK-GRIPVIAGTGA 101 (314)
T ss_dssp CBCHHHHHHHHHHHHH---HTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-TSSCEEEECCC
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 4666666665555443 47999999984 88 88888777777776654321 11145555544
No 41
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=38.89 E-value=2.2e+02 Score=25.75 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=42.0
Q ss_pred ceEEEeeCCCCcC-------ChhhHHHHHHHhhhccCCCCccEEEEc--CC----c----HHHHHHHHhc-CCCcceeec
Q 043340 161 TNVVFMGMGEPML-------NLKSVLEAHRCLNKDVQIGQRMITIST--VG----V----PNTIKKLASY-KLQSTLAIR 222 (327)
Q Consensus 161 ~~Ivf~G~GEPll-------n~~~v~~~i~~l~~~~gi~~r~itisT--nG----~----~~~i~~L~~~-~~~v~lavS 222 (327)
..|+|++-|=|.- ....+.+..+.+.+.+|+..-.++..+ .| + .+.+++|.+. |.. ++.|-
T Consensus 176 ~~llfs~HG~P~~~~~~gDpY~~~~~~t~~~l~e~l~~~~~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k-~v~V~ 254 (310)
T 2h1v_A 176 AMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQ-AFVYV 254 (310)
T ss_dssp EEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTCSCEEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCS-EEEEE
T ss_pred ceEEEecCCCchhhccCCCChHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCc-eEEEE
Confidence 6899999776643 235677888877766666322445544 23 2 1358888887 754 34333
Q ss_pred -ccCCCCcHHHHH
Q 043340 223 -SAGVNDQVEHAV 234 (327)
Q Consensus 223 -I~GvND~~e~a~ 234 (327)
+--+.|..|-++
T Consensus 255 P~~F~sD~lEtl~ 267 (310)
T 2h1v_A 255 PVGFVADHLEVLY 267 (310)
T ss_dssp CTTCCSSCHHHHT
T ss_pred CCcccccceeeHH
Confidence 323445544443
No 42
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=38.66 E-value=2.5e+02 Score=27.98 Aligned_cols=129 Identities=11% Similarity=0.099 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCcceEEEeeCCCC-cCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCCcc
Q 043340 140 LSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEP-MLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQST 218 (327)
Q Consensus 140 lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEP-lln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~v~ 218 (327)
.+.++++++.....+ .+-+-|-+ |+|.| .-..+.+.+++..+++..++ .+.|.|.= ...++.-++.-.+..
T Consensus 337 ~~~~~a~~~A~~~v~---~GAdiIDI-gpg~~~v~~~ee~~rvv~~i~~~~~v---pisIDT~~-~~v~eaal~~~~G~~ 408 (566)
T 1q7z_A 337 GNEEIVIKEAKTQVE---KGAEVLDV-NFGIESQIDVRYVEKIVQTLPYVSNV---PLSLDIQN-VDLTERALRAYPGRS 408 (566)
T ss_dssp TCCHHHHHHHHHHHH---TTCSEEEE-ECSSGGGSCHHHHHHHHHHHHHHTCS---CEEEECCC-HHHHHHHHHHCSSCC
T ss_pred CCHHHHHHHHHHHHH---CCCCEEEE-CCCCCCCCHHHHHHHHHHHHHhhCCc---eEEEeCCC-HHHHHHHHHhcCCCC
Confidence 345777777665543 23333333 35654 44456677788877655566 79999862 223444444411234
Q ss_pred eeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccC-CCCCCCCCCcHHHHHHHHHHHHhCCCe
Q 043340 219 LAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNP-IEGSDYQRPYKKAVLAFAGALESHKIT 283 (327)
Q Consensus 219 lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np-~~~~~~~~p~~e~i~~f~~~L~~~gi~ 283 (327)
+--|+.|.+ +.+.+++++++..+ +.+-++++.. .+.. |.. -.+.+++..+.+.+.|++
T Consensus 409 iINdis~~~---~~~~~~~~~~~~~g--~~vV~m~~~~~~p~t-~~~-~~~~l~~~~~~a~~~Gi~ 467 (566)
T 1q7z_A 409 LFNSAKVDE---EELEMKINLLKKYG--GTLIVLLMGKDVPKS-FEE-RKEYFEKALKILERHDFS 467 (566)
T ss_dssp EEEEEESCH---HHHHHHHHHHHHHC--CEEEEESCSSSCCCS-HHH-HHHHHHHHHHHHHHTTCG
T ss_pred EEEECCcch---hhHHHHHHHHHHhC--CeEEEEeCCCCCcCC-HHH-HHHHHHHHHHHHHHCCCC
Confidence 555565644 44567777777765 5666665443 1111 100 123344555667788985
No 43
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=38.18 E-value=2.2e+02 Score=25.58 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC----------ChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML----------NLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll----------n~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i 207 (327)
+..+++++++++....+ .+-+-|-+ | ||.+- ..+.+..+++.+++. ++ .|.|.|.-. ..+
T Consensus 24 ~~~~~~~a~~~a~~~v~---~GAdiIDI-G-gestrpga~~v~~~eE~~Rv~pvi~~l~~~-~~---piSIDT~~~-~va 93 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAA---AGAGIVDV-G-GESSRPGATRVDPAVETSRVIPVVKELAAQ-GI---TVSIDTMRA-DVA 93 (280)
T ss_dssp CCCSHHHHHHHHHHHHH---TTCSEEEE-E-CC--------------HHHHHHHHHHHHHT-TC---CEEEECSCH-HHH
T ss_pred ccCCHHHHHHHHHHHHH---CCCCEEEE-C-CccCCCCCCCCCHHHHHHHHHHHHHHhhcC-CC---EEEEeCCCH-HHH
Confidence 46788999988877654 35555555 4 44321 123455556665443 66 799999532 235
Q ss_pred HHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC------CCCCCc---HHHHHHHHHHHH
Q 043340 208 KKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS------DYQRPY---KKAVLAFAGALE 278 (327)
Q Consensus 208 ~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~------~~~~p~---~e~i~~f~~~L~ 278 (327)
+.-++.| ..+--|+.|.+.++ ++++++++.+ +.+-++++.-.+.. .|...- .+.+++-.+.+.
T Consensus 94 ~aAl~aG--a~iINdvsg~~~d~----~m~~~~a~~~--~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~ 165 (280)
T 1eye_A 94 RAALQNG--AQMVNDVSGGRADP----AMGPLLAEAD--VPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAV 165 (280)
T ss_dssp HHHHHTT--CCEEEETTTTSSCT----THHHHHHHHT--CCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC--CCEEEECCCCCCCH----HHHHHHHHhC--CeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 5555554 45667777776332 4556666654 45656654311211 111111 334445556667
Q ss_pred hCCCe
Q 043340 279 SHKIT 283 (327)
Q Consensus 279 ~~gi~ 283 (327)
++|+.
T Consensus 166 ~~Gi~ 170 (280)
T 1eye_A 166 AAGVD 170 (280)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 88986
No 44
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=38.02 E-value=2.3e+02 Score=25.54 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhc-cCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKD-VQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~-~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+. -|- +-.+-+.|.+
T Consensus 24 ~iD~~~l~~lv~~li~---~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~-rvpviaGvg~ 86 (301)
T 3m5v_A 24 KVDEQSYARLIKRQIE---NGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGT-KVKVLAGAGS 86 (301)
T ss_dssp EECHHHHHHHHHHHHH---TTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTS-SCEEEEECCC
T ss_pred CCCHHHHHHHHHHHHH---cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCC-CCeEEEeCCC
Confidence 4666555555555443 58999999984 99 888887777777766543 120 1155555554
No 45
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=37.06 E-value=2.3e+02 Score=25.38 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
..+..+.+.+.+....+ .++++|+..| .|| |.+..++-.++++...+..+ +.-.+.+.|.+
T Consensus 19 g~iD~~~l~~lv~~li~---~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg~ 81 (294)
T 3b4u_A 19 GTVDIDAMIAHARRCLS---NGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI-APSRIVTGVLV 81 (294)
T ss_dssp SSBCHHHHHHHHHHHHH---TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC-CGGGEEEEECC
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 35666666665555543 5899999999 489 88888887788887764322 11245555544
No 46
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=36.37 E-value=2.3e+02 Score=25.27 Aligned_cols=141 Identities=11% Similarity=-0.011 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeCC-----CCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHH
Q 043340 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMG-----EPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLA 211 (327)
Q Consensus 137 ~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~G-----EPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~ 211 (327)
...++.++.++-+..+.+ .+++.|-+.+ + +|++. + ..++++.+++..+. .+..-+- ....+++..
T Consensus 21 ~~~~~~e~k~~i~~~L~~---~Gv~~IE~g~-~~~~~~~p~~~-d-~~~~~~~~~~~~~~---~~~~l~~-~~~~i~~a~ 90 (298)
T 2cw6_A 21 KNIVSTPVKIKLIDMLSE---AGLSVIETTS-FVSPKWVPQMG-D-HTEVLKGIQKFPGI---NYPVLTP-NLKGFEAAV 90 (298)
T ss_dssp SSCCCHHHHHHHHHHHHH---TTCSEECCEE-CCCTTTCGGGT-T-HHHHHHHSCCCTTC---BCCEECC-SHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---cCcCEEEECC-CcCcccccccC-C-HHHHHHHHhhCCCC---EEEEEcC-CHHhHHHHH
Confidence 356888888766655543 3677777755 4 57664 3 34566666432233 3333221 234577777
Q ss_pred hcCCCcceeecccC--------CCC----cHHHHHHHHHHHHhcCCcceEEEE-eccCCCCCCCCCCcHHHHHHHHHHHH
Q 043340 212 SYKLQSTLAIRSAG--------VND----QVEHAVELAELLHEWGRGHHVNLI-PFNPIEGSDYQRPYKKAVLAFAGALE 278 (327)
Q Consensus 212 ~~~~~v~lavSI~G--------vND----~~e~a~~L~~~l~~l~~~~~vnLI-p~np~~~~~~~~p~~e~i~~f~~~L~ 278 (327)
+.+.+ .+.+.++. ++- ..+.+.+.+++++..+..+.+++. -|.+.. ..+.+.+.+.++.+.+.
T Consensus 91 ~ag~~-~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 166 (298)
T 2cw6_A 91 AAGAK-EVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPY---EGKISPAKVAEVTKKFY 166 (298)
T ss_dssp HTTCS-EEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTT---TBSCCHHHHHHHHHHHH
T ss_pred HCCCC-EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCc---CCCCCHHHHHHHHHHHH
Confidence 77654 23333211 111 123455566677766544444443 132221 12346677777777777
Q ss_pred hCCCeE-EEcCCCC
Q 043340 279 SHKITT-SIRQTRG 291 (327)
Q Consensus 279 ~~gi~v-~vR~~~G 291 (327)
+.|... .+-++-|
T Consensus 167 ~~Ga~~i~l~DT~G 180 (298)
T 2cw6_A 167 SMGCYEISLGDTIG 180 (298)
T ss_dssp HTTCSEEEEEETTS
T ss_pred HcCCCEEEecCCCC
Confidence 777753 3333333
No 47
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=36.20 E-value=82 Score=29.61 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=46.8
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG-SDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 223 I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~-~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
=|+.+++.+.+.++++.++..+. .-+..-.|.|... ..|+.+..+.++.+++..++.|+++.
T Consensus 112 gpcs~es~e~a~~~a~~~k~aGa-~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~ 174 (350)
T 1vr6_A 112 GPCSVEGREMLMETAHFLSELGV-KVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVV 174 (350)
T ss_dssp ECSBCCCHHHHHHHHHHHHHTTC-CEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEE
T ss_pred eCCCcCCHHHHHHHHHHHHHcCC-CeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEE
Confidence 45668899999999999998762 2344445665432 24777789999999999999999974
No 48
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=35.05 E-value=24 Score=34.30 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC-CCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~-~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
+.++++++++-++.. ..+|++.||+.+...| +..++++++.|.+.|.+.|+...+
T Consensus 295 ~~~ei~~f~~~v~~~---~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~lG~~~v~ 350 (435)
T 3lg3_A 295 DLALAKRFADAVHAQ---FPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQF 350 (435)
T ss_dssp CHHHHHHHHHHHHHH---STTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHhccc---cCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 477788887777651 3467788887765443 246789999999999999988654
No 49
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=35.01 E-value=1.4e+02 Score=28.13 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV 203 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~ 203 (327)
+.|.+|+++.+....++.......+.|..+-+.-.+++++.++++.+.+ .|. ..|.+ +|+|+
T Consensus 120 ~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~-~Ga--~~i~l~DT~G~ 182 (370)
T 3rmj_A 120 KMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIE-AGA--TTINIPDTVGY 182 (370)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHH-HTC--CEEEEECSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHH-cCC--CEEEecCccCC
Confidence 5678999988877665543334456776655566788899999998854 455 35665 89997
No 50
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=34.96 E-value=2.5e+02 Score=25.13 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+..+ ++-.+-+.+.+
T Consensus 19 ~iD~~~l~~lv~~li~---~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-grvpviaGvg~ 80 (292)
T 3daq_A 19 KVNLEALKAHVNFLLE---NNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD-KRVPVIAGTGT 80 (292)
T ss_dssp EECHHHHHHHHHHHHH---TTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCC
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-CCCcEEEeCCc
Confidence 4555555555544443 58999999984 88 78887777777776654311 11145555543
No 51
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=34.38 E-value=2.5e+02 Score=24.96 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=75.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCcceEEEeeC--CC--CcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHh
Q 043340 137 SRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGM--GE--PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLAS 212 (327)
Q Consensus 137 ~r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~--GE--Plln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~ 212 (327)
...++.++.++-+..+.+ .+++.|-+.+. ++ |.+. ...++++.+.+..+. ++.+-+ .....+++..+
T Consensus 20 ~~~~~~e~k~~i~~~L~~---~Gv~~IE~g~~~~~~~~p~~~--~~~e~~~~i~~~~~~---~v~~l~-~n~~~i~~a~~ 90 (295)
T 1ydn_A 20 KRFVPTADKIALINRLSD---CGYARIEATSFVSPKWVPQLA--DSREVMAGIRRADGV---RYSVLV-PNMKGYEAAAA 90 (295)
T ss_dssp SSCCCHHHHHHHHHHHTT---TTCSEEEEEECSCTTTCGGGT--THHHHHHHSCCCSSS---EEEEEC-SSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH---cCcCEEEEccCcCcccccccc--CHHHHHHHHHhCCCC---EEEEEe-CCHHHHHHHHH
Confidence 345888887766655533 35677766553 33 3333 345777777543244 554333 22456778777
Q ss_pred cCCCcceeecccC------------CCCcHHHHHHHHHHHHhcCCcceEEEEe-ccCCCCCCCCCCcHHHHHHHHHHHHh
Q 043340 213 YKLQSTLAIRSAG------------VNDQVEHAVELAELLHEWGRGHHVNLIP-FNPIEGSDYQRPYKKAVLAFAGALES 279 (327)
Q Consensus 213 ~~~~v~lavSI~G------------vND~~e~a~~L~~~l~~l~~~~~vnLIp-~np~~~~~~~~p~~e~i~~f~~~L~~ 279 (327)
.+.+ .+.+++++ ..+..+.+.+.+++++..+..+..++.- |.+.. ....+++.+.+|.+.+.+
T Consensus 91 ~G~~-~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~---~~~~~~~~~~~~~~~~~~ 166 (295)
T 1ydn_A 91 AHAD-EIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPY---DGPVTPQAVASVTEQLFS 166 (295)
T ss_dssp TTCS-EEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETT---TEECCHHHHHHHHHHHHH
T ss_pred CCCC-EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCc---CCCCCHHHHHHHHHHHHh
Confidence 7654 34444322 1122334445566777765322222321 22111 134567888888888888
Q ss_pred CCCeE-EEcCCCC
Q 043340 280 HKITT-SIRQTRG 291 (327)
Q Consensus 280 ~gi~v-~vR~~~G 291 (327)
.|+.. .+-++.|
T Consensus 167 ~G~d~i~l~Dt~G 179 (295)
T 1ydn_A 167 LGCHEVSLGDTIG 179 (295)
T ss_dssp HTCSEEEEEETTS
T ss_pred cCCCEEEecCCCC
Confidence 88753 4444444
No 52
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=33.05 E-value=94 Score=28.08 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=46.4
Q ss_pred ccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-CCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 223 SAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-DYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 223 I~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
=|+.+++.+.+.++++.++..+. .-+..-.|.|.... .|+.+..+.++.+++..++.|+.+.
T Consensus 44 gpc~~~~~e~a~~~a~~~k~~ga-~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~ 106 (276)
T 1vs1_A 44 GPCSVESWEQVREAALAVKEAGA-HMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVV 106 (276)
T ss_dssp ECSBCCCHHHHHHHHHHHHHHTC-SEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEE
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-CEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEE
Confidence 34578899999999999998762 23444445554422 3777789999999999999999874
No 53
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=32.96 E-value=2.8e+02 Score=25.16 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCC----------hhhHHHHHHHhhhccCCCCccEEEEcCCcHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLN----------LKSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln----------~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i 207 (327)
+..+.+++++++....+ .+-+-|-+ | ||.+-- .+.+..+++.+++. ++ .|.|.|.= ...+
T Consensus 41 ~~~~~~~a~~~a~~~v~---~GAdiIDI-G-geSTrPga~~v~~~eE~~Rv~pvi~~l~~~-~v---piSIDT~~-~~Va 110 (294)
T 2y5s_A 41 RFLARDDALRRAERMIA---EGADLLDI-G-GESTRPGAPPVPLDEELARVIPLVEALRPL-NV---PLSIDTYK-PAVM 110 (294)
T ss_dssp ---CTTHHHHHHHHHHH---TTCSEEEE-E-SSCCSTTCCCCCHHHHHHHHHHHHHHHGGG-CS---CEEEECCC-HHHH
T ss_pred CcCCHHHHHHHHHHHHH---CCCCEEEE-C-CCcCCCCCCCCCHHHHHHHHHHHHHHHhhC-CC---eEEEECCC-HHHH
Confidence 45677888888776654 35555554 5 554321 23455566666433 66 79999852 2234
Q ss_pred HHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEecc--CCCC----CCCCCCcHHH---HHHHHHHHH
Q 043340 208 KKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFN--PIEG----SDYQRPYKKA---VLAFAGALE 278 (327)
Q Consensus 208 ~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~n--p~~~----~~~~~p~~e~---i~~f~~~L~ 278 (327)
+.-++.| ..+--|+.|.+| + ++++++++.+ +.+-+++.. |... ..|...-.+. +++-.+.+.
T Consensus 111 ~aAl~aG--a~iINdVsg~~d-~----~m~~~~a~~~--~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~ 181 (294)
T 2y5s_A 111 RAALAAG--ADLINDIWGFRQ-P----GAIDAVRDGN--SGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALR 181 (294)
T ss_dssp HHHHHHT--CSEEEETTTTCS-T----THHHHHSSSS--CEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC--CCEEEECCCCCc-h----HHHHHHHHhC--CCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHH
Confidence 4444554 456677778773 2 4566667754 566666552 2111 1122111333 344455567
Q ss_pred hCCCe
Q 043340 279 SHKIT 283 (327)
Q Consensus 279 ~~gi~ 283 (327)
++|+.
T Consensus 182 ~~Gi~ 186 (294)
T 2y5s_A 182 DAGVA 186 (294)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 78987
No 54
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=32.03 E-value=2.8e+02 Score=24.77 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+..+ ++-.+-+.+.+
T Consensus 18 ~iD~~~l~~lv~~li~---~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg~ 79 (291)
T 3tak_A 18 GVDWKSLEKLVEWHIE---QGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVAN-KRIPIIAGTGA 79 (291)
T ss_dssp CBCHHHHHHHHHHHHH---HTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCC
T ss_pred CcCHHHHHHHHHHHHH---CCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCC
Confidence 4666666555555443 47999999994 88 77787777777776654221 11145555544
No 55
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=31.76 E-value=1.6e+02 Score=26.54 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCCccEEE-EcCCc-HH-HH----HHHH
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITI-STVGV-PN-TI----KKLA 211 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~r~iti-sTnG~-~~-~i----~~L~ 211 (327)
+.|.+|.++.+....++.......|.|.-+-++-..++.+.++++.+. ..|. ..|.+ +|+|+ .| .+ +.+.
T Consensus 113 ~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~-~~G~--~~i~l~DT~G~~~P~~v~~lv~~l~ 189 (293)
T 3ewb_X 113 KMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAI-DAGA--TVINIPDTVGYTNPTEFGQLFQDLR 189 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTC--CEEEEECSSSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHH-HcCC--CEEEecCCCCCCCHHHHHHHHHHHH
Confidence 467888888877665543333334556554445677888999998885 4565 35665 79997 24 33 3333
Q ss_pred hcCCCc-ceeecccCCCCcH-HHHHHHHHHHHh
Q 043340 212 SYKLQS-TLAIRSAGVNDQV-EHAVELAELLHE 242 (327)
Q Consensus 212 ~~~~~v-~lavSI~GvND~~-e~a~~L~~~l~~ 242 (327)
+.-... .+.+++-.-||.- .-+..++.+-.+
T Consensus 190 ~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aG 222 (293)
T 3ewb_X 190 REIKQFDDIIFASHCHDDLGMATANALAAIENG 222 (293)
T ss_dssp HHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTT
T ss_pred HhcCCccCceEEEEeCCCcChHHHHHHHHHHhC
Confidence 332111 2456666666642 234444444444
No 56
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=31.76 E-value=69 Score=27.41 Aligned_cols=63 Identities=3% Similarity=-0.040 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcc
Q 043340 228 DQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS----DYQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293 (327)
Q Consensus 228 D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~----~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~d 293 (327)
.+++++.+|++- +.+ ...+|+=..+..++. ..-.-++++++.|.++...+|+.+++|.-+...
T Consensus 105 k~p~d~~~lve~--Gv~-i~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~~~Gv~v~~q~vP~d~ 171 (187)
T 3lfj_A 105 KNIDTCKRVMDG--GLP-ITTLNIGGVAKTPQRKGISQSVSLSEDEVKTLLELKTKYNVDVYLQMIPDSE 171 (187)
T ss_dssp SSHHHHHHHHHT--TCC-CSEEEEEEBCCCTTSEECSSSBEECHHHHHHHHHHHHHHCCEEEECSSTTSC
T ss_pred CCHHHHHHHHHc--CCC-CCEEEECCCCCCCCCEEEeccEeeCHHHHHHHHHHHhccCCEEEEEECCCCC
Confidence 468888888662 332 357887555444332 223457899999988887779999999876543
No 57
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=29.67 E-value=3.1e+02 Score=24.70 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+..+ ++-.+.+.|.+
T Consensus 25 ~iD~~~l~~lv~~li~---~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg~ 86 (309)
T 3fkr_A 25 DLDLASQKRAVDFMID---AGSDGLCILANFSEQFAITDDERDVLTRTILEHVA-GRVPVIVTTSH 86 (309)
T ss_dssp SBCHHHHHHHHHHHHH---TTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCC
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECccccCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecCC
Confidence 4666666555555443 58999999984 88 78888777777776654311 11145555544
No 58
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=29.33 E-value=72 Score=25.75 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHh-CCCeEEEcCCCCcccccc
Q 043340 232 HAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALES-HKITTSIRQTRGLDASAA 297 (327)
Q Consensus 232 ~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~-~gi~v~vR~~~G~di~aa 297 (327)
++.+|.++++..+...-|--+|.|..+. ..|..+.+.+|.+.|++ .+++|..-+++.+...|.
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt---~~~~~~~~~~f~~~L~~~~~lpV~~~DERlTT~~A~ 104 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGT---EQPLTARARKFANRIHGRFGVEVKLHDERLSTVEAR 104 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSC---BCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcC---cCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHH
Confidence 4677888888766445555588886542 45677889999999975 589998888777776553
No 59
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=29.05 E-value=98 Score=24.40 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCceeeEEecCCC--cEEEEEEecCCCeE
Q 043340 50 PRPVPQSFRNDLQEAGWTVGRLPIFRTVTAADG--TVKLLIKLEDNRLI 96 (327)
Q Consensus 50 ~~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dg--t~K~l~~l~dg~~i 96 (327)
++.||...++.++.+ |+-....-+. ...++ ...|-++|.+|..|
T Consensus 10 ~~~LP~~~~~fi~~~-fp~~~i~~v~--~e~~~~~~~~YeV~l~ng~el 55 (128)
T 3elg_A 10 VNKLPVAAREMIGKH-FSQTKVAYIK--IEKDLFQTTSYDVKLADGIEL 55 (128)
T ss_dssp GGGSCHHHHHHHHHH-CTTSCEEEEE--EEECTTCCEEEEEEETTSCEE
T ss_pred hHHCCHHHHHHHHHH-CCCCceEEEE--EEcccCcCceEEEEECCCcEE
Confidence 458999999999999 6544332233 33332 25899999999543
No 60
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.73 E-value=1.5e+02 Score=22.69 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 206 TIKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 206 ~i~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
.|++|.+. ....+.+- +.|+.|-++.-.+|.+.++ ..+-+|-|.. +..++++|.+..+..|..+.
T Consensus 41 sieelvkk-ynativvv---vvddkewaekairfvkslg--aqvliiiydq---------dqnrleefsrevrrrgfevr 105 (134)
T 2l69_A 41 SIEELVKK-YNATIVVV---VVDDKEWAEKAIRFVKSLG--AQVLIIIYDQ---------DQNRLEEFSREVRRRGFEVR 105 (134)
T ss_dssp HHHHHTTC-CCCEEEEE---ECSSHHHHHHHHHHHHHHC--CCCEEEEECS---------CHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHH-hCCeEEEE---EEccHHHHHHHHHHHHhcC--CeEEEEEEeC---------chhHHHHHHHHHHhcCceEE
Confidence 46666653 22233222 3467888999999999987 5666665552 56789999999999999874
Q ss_pred E
Q 043340 286 I 286 (327)
Q Consensus 286 v 286 (327)
-
T Consensus 106 t 106 (134)
T 2l69_A 106 T 106 (134)
T ss_dssp E
T ss_pred E
Confidence 3
No 61
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=28.14 E-value=3.5e+02 Score=24.68 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCcceEEEeeC--CCCcCChhhHHHHHHHhhhccCCCCccEEEEcC
Q 043340 140 LSSHEIVGQVLAIEEIFKHRVTNVVFMGM--GEPMLNLKSVLEAHRCLNKDVQIGQRMITISTV 201 (327)
Q Consensus 140 lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~--GEPlln~~~v~~~i~~l~~~~gi~~r~itisTn 201 (327)
.+.+.+.+.+...++.++ ++.|-++=+ =+|....+.+.++++.+++. |. .|.|.||+-
T Consensus 132 ~s~~~i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~~-Gk-ir~iGvSn~ 191 (353)
T 3erp_A 132 GSRKYLIASLDQSLKRMG--LEYVDIFYHHRPDPETPLKETMKALDHLVRH-GK-ALYVGISNY 191 (353)
T ss_dssp TCHHHHHHHHHHHHHHHT--CSCEEEEEECSCCTTSCHHHHHHHHHHHHHT-TS-EEEEEEESC
T ss_pred CCHHHHHHHHHHHHHHhC--CCeEeEEEecCCCCCCCHHHHHHHHHHHHHC-CC-ccEEEecCC
Confidence 477888888887777664 333333332 33334445566666666543 43 356666653
No 62
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=27.80 E-value=3e+02 Score=25.71 Aligned_cols=95 Identities=18% Similarity=0.281 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhcCCc-ceEEE---eeCCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcH-HHHHHHHhcCCC
Q 043340 142 SHEIVGQVLAIEEIFKHRV-TNVVF---MGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVP-NTIKKLASYKLQ 216 (327)
Q Consensus 142 ~~EIv~qv~~~~~~~~~~v-~~Ivf---~G~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~-~~i~~L~~~~~~ 216 (327)
..++.+-...+.+.++... -.++| .| ++|.+. +.+.+.++.+ +. |. ++|.|-.-|.+ +.++.|-+....
T Consensus 218 ~~q~~~ta~ll~e~lg~~~~~~~~fQSr~G-~~~WL~-P~t~~~l~~L-~~-G~--k~vvVvP~gFvsD~lETL~eid~e 291 (362)
T 1lbq_A 218 PAEVAATVYNIMQKLKFKNPYRLVWQSQVG-PKPWLG-AQTAEIAEFL-GP-KV--DGLMFIPIAFTSDHIETLHEIDLG 291 (362)
T ss_dssp HHHHHHHHHHHHHHTTTCSCEEEEEECCCS-SSCBCS-CBHHHHHHHH-GG-GC--SCEEEECTTCSSCCHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEEECCCC-CcccCC-CCHHHHHHHH-Hc-CC--CeEEEECCeechhhHhhHHHHHHH
Confidence 3455444444444443211 23455 35 678888 4577888877 43 44 68888888875 346665442111
Q ss_pred -------cceeecccCCCCcHHHHHHHHHHHHh
Q 043340 217 -------STLAIRSAGVNDQVEHAVELAELLHE 242 (327)
Q Consensus 217 -------v~lavSI~GvND~~e~a~~L~~~l~~ 242 (327)
.-+-..+|-+||++..++.|++++.+
T Consensus 292 ~~e~~~~~G~~~~~p~Ln~~p~fi~~L~~lv~~ 324 (362)
T 1lbq_A 292 VIGESEYKDKFKRCESLNGNQTFIEGMADLVKS 324 (362)
T ss_dssp CCTTCTTGGGEEECCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEcCCCCCCHHHHHHHHHHHHH
Confidence 01223488899999999988888765
No 63
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=27.20 E-value=3.5e+02 Score=24.42 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++.+.+.. +.-.+.+.|.+
T Consensus 25 ~iD~~~l~~lv~~li~---~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~--grvpViaGvg~ 85 (313)
T 3dz1_A 25 KIDDVSIDRLTDFYAE---VGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA--KSMQVIVGVSA 85 (313)
T ss_dssp CBCHHHHHHHHHHHHH---TTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC--TTSEEEEECCC
T ss_pred CcCHHHHHHHHHHHHH---CCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc--CCCcEEEecCC
Confidence 4666666665555543 58999999984 88 7788887777777775432 32355555544
No 64
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=27.14 E-value=1e+02 Score=25.58 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcc
Q 043340 228 DQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS----DYQRPYKKAVLAFAGALESHKITTSIRQTRGLD 293 (327)
Q Consensus 228 D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~----~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~d 293 (327)
.+++++.+|++ .+.+ ...+|+=..+..++. ..-.-++++++.|.+...+.|+.+++|.-+...
T Consensus 86 k~p~d~~~lv~--~g~~-i~~vNvG~m~~~~g~~~i~~~v~v~~ed~~~lk~L~~~~Gv~v~~q~vP~d~ 152 (163)
T 3p3v_A 86 KDLQDAKLLVE--GGVP-ITEINIGNIHKTDDKVAITQFISLGETDKSAIRCLAHDHHVVFNTKTTPAGN 152 (163)
T ss_dssp SSHHHHHHHHH--TTCC-CCEEEEEEBCCCTTSEESSSSBEECHHHHHHHHHHHHTSCCEEECCCSSSCC
T ss_pred CCHHHHHHHHH--cCCC-CCEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHHHhcCCEEEEEECcCCC
Confidence 46888888876 2332 357887555444332 223457899999988766489999999877543
No 65
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=26.98 E-value=3.3e+02 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhhc
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNKD 188 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~~ 188 (327)
.+..+.+.+.+....+ .++++|+..| .|| |.+..++=.++++...+.
T Consensus 15 ~iD~~~l~~lv~~li~---~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~ 63 (286)
T 2r91_A 15 RLDPELFANHVKNITS---KGVDVVFVAGTTGLGPALSLQEKMELTDAATSA 63 (286)
T ss_dssp EECHHHHHHHHHHHHH---TTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH---CCCCEEEECccccChhhCCHHHHHHHHHHHHHH
Confidence 4565555555554443 5799999999 489 888888777888877643
No 66
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=26.84 E-value=3.4e+02 Score=24.19 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
..+..+.+.+.+....+ .++++|+..| .|| |.+..++-.++++...+
T Consensus 15 g~iD~~~l~~lv~~li~---~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~ 63 (293)
T 1w3i_A 15 NRIDKEKLKIHAENLIR---KGIDKLFVNGTTGLGPSLSPEEKLENLKAVYD 63 (293)
T ss_dssp SSBCHHHHHHHHHHHHH---TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 34666666555555443 5799999999 489 88888888888887764
No 67
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=26.69 E-value=3.5e+02 Score=24.25 Aligned_cols=140 Identities=10% Similarity=0.069 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhcc--CCCCccEEEEcCCcHHH---HHHHH
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNT---IKKLA 211 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~~--gi~~r~itisTnG~~~~---i~~L~ 211 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+.. .+ +--+.+.+|.+... .+...
T Consensus 21 ~iD~~~l~~lv~~li~---~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grv-pviaGvg~~~t~~ai~la~~a~ 96 (300)
T 3eb2_A 21 RVRADVMGRLCDDLIQ---AGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRV-PVVAGVASTSVADAVAQAKLYE 96 (300)
T ss_dssp CBCHHHHHHHHHHHHH---TTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSS-CBEEEEEESSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCC-cEEEeCCCCCHHHHHHHHHHHH
Confidence 4666666555555443 58999998884 88 7788777777777665421 12 00234455555432 33434
Q ss_pred hcCCCcceeecccCCC-CcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCC
Q 043340 212 SYKLQSTLAIRSAGVN-DQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTR 290 (327)
Q Consensus 212 ~~~~~v~lavSI~GvN-D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~ 290 (327)
+.|.+.-+.+ -|-.+ -+.+.+.+-.+-+.+. ..+.+|-||-.....+ ..+.+.+.++. +..--+-|..+-
T Consensus 97 ~~Gadavlv~-~P~y~~~~~~~l~~~f~~va~a---~~lPiilYn~P~~tg~-~l~~~~~~~La----~~pnIvgiKdss 167 (300)
T 3eb2_A 97 KLGADGILAI-LEAYFPLKDAQIESYFRAIADA---VEIPVVIYTNPQFQRS-DLTLDVIARLA----EHPRIRYIKDAS 167 (300)
T ss_dssp HHTCSEEEEE-ECCSSCCCHHHHHHHHHHHHHH---CSSCEEEEECTTTCSS-CCCHHHHHHHH----TSTTEEEEEECS
T ss_pred HcCCCEEEEc-CCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEECccccCC-CCCHHHHHHHH----cCCCEEEEEcCC
Confidence 4454322222 23332 2333333333322221 2344565773222222 23455565553 333335565554
Q ss_pred C
Q 043340 291 G 291 (327)
Q Consensus 291 G 291 (327)
|
T Consensus 168 g 168 (300)
T 3eb2_A 168 T 168 (300)
T ss_dssp S
T ss_pred C
Confidence 4
No 68
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=26.60 E-value=31 Score=33.58 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=41.5
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCC-CCCcHHHHHHHHHHHHhCCCeEEE
Q 043340 224 AGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDY-QRPYKKAVLAFAGALESHKITTSI 286 (327)
Q Consensus 224 ~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~-~~p~~e~i~~f~~~L~~~gi~v~v 286 (327)
+|.. +.++++++++-++.. ..+|++.||..+...| ...++++++.|.+.|.+.|+...+
T Consensus 291 ~~~~-~~eei~~f~~~v~~~---~P~~~l~~~~sPsfnw~~~~~~~~~~~f~~eL~~lGv~~v~ 350 (439)
T 3i4e_A 291 TGKP-DLEYAKKFAEAIHKQ---FPGKLLSYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQF 350 (439)
T ss_dssp CSSC-CHHHHHHHHHHHHHH---STTCEEEEECCSSSCHHHHSCHHHHHTHHHHHHHHTCCEEE
T ss_pred CCCC-CHHHHHHHHHHhccc---CCceEEeeCCCCCCcCcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 3443 477888888877652 3467777886664432 246789999999999999988643
No 69
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=25.86 E-value=3.7e+02 Score=24.26 Aligned_cols=109 Identities=14% Similarity=0.200 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee--CCCCcCChhhHHHHHHHhhhccCCCCccEEEEcCCcHHHHHHHHhcCCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG--MGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQ 216 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G--~GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i~~L~~~~~~ 216 (327)
..+.+.+.+.+....+.++ ++.|-++= .=+|....+.+.++++.+++. |. .|+|.+|.-. ...++++......
T Consensus 98 ~~~~~~i~~~~~~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~-Gk-ir~iGvSn~~-~~~l~~~~~~~~~ 172 (337)
T 3v0s_A 98 XGTPDYVRSCCEASLKRLD--VDYIDLFYIHRIDTTVPIEITMGELXXLVEE-GK-IXYVGLSEAS-PDTIRRAHAVHPV 172 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHT--CSCEEEEEESSCCTTSCHHHHHHHHHHHHHT-TS-EEEEEEESCC-HHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHhC--CCCeeEEEecCCCCCCCHHHHHHHHHHHHHC-CC-eeEEeccCCC-HHHHHHHhccCCc
Confidence 4677888888888777664 33333332 234444456677788877653 54 4678887643 4456666554221
Q ss_pred cceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCC
Q 043340 217 STLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIE 258 (327)
Q Consensus 217 v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~ 258 (327)
..+.+...=++...+ .++.++++.. .|.+++|.|..
T Consensus 173 ~~~Q~~~~~~~~~~e--~~l~~~~~~~----gi~v~a~spL~ 208 (337)
T 3v0s_A 173 TALQIEYSLWTRDIE--DEIVPLCRQL----GIGIVPYSPIG 208 (337)
T ss_dssp CEEEEECBTTBCGGG--TTHHHHHHHH----TCEEEEESTTH
T ss_pred eEEEeeccccccchh--HHHHHHHHHc----CceEEEecccc
Confidence 112222111222211 3577888774 35678888874
No 70
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=25.19 E-value=1.7e+02 Score=25.98 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=43.8
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC-CCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS-DYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 225 GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~-~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
-.+++++.+.++++.++..+. .-|..-.|.|.... .|+.+..+.++.+++++++.|+++.
T Consensus 31 c~~~~~e~a~~~a~~l~~~Ga-~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~ 91 (262)
T 1zco_A 31 CSIESREQIMKVAEFLAEVGI-KVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTV 91 (262)
T ss_dssp SBCCCHHHHHHHHHHHHHTTC-CEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEE
Confidence 346789999999999998762 33444445554322 4566669999999999999999974
No 71
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=24.62 E-value=3.7e+02 Score=23.86 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|+..| .|| |.+..++-.++++...+
T Consensus 16 ~iD~~~l~~lv~~li~---~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~ 63 (288)
T 2nuw_A 16 KVNVDALKTHAKNLLE---KGIDAIFVNGTTGLGPALSKDEKRQNLNALYD 63 (288)
T ss_dssp CBCHHHHHHHHHHHHH---TTCCEEEETSTTTTGGGSCHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECccccChhhCCHHHHHHHHHHHHH
Confidence 4666656555555443 5799999999 489 88888888888887764
No 72
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=24.58 E-value=3.3e+02 Score=24.20 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 206 TIKKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 206 ~i~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
.+++|.+.|.--.+.|| |-+.++++++.+. ..++-++||+.... + ..+.+.++++|+.+.
T Consensus 174 al~~l~~~Gkir~iGvS----n~~~~~l~~~~~~-------~~~~Q~~~~~~~~~----~-----~~l~~~~~~~gi~v~ 233 (292)
T 4exb_A 174 TLAALKREGLIGAYGLS----GKTVEGGLRALRE-------GDCAMVTYNLNERA----E-----RPVIEYAAAHAKGIL 233 (292)
T ss_dssp HHHHHHHTTSEEEEEEE----CSSHHHHHHHHHH-------SSEEEEECSSSCCT----T-----HHHHHHHHHTTCEEE
T ss_pred HHHHHHHCCCceEEEeC----CCCHHHHHHHHHh-------hcEEeeccccccCC----H-----HHHHHHHHHCCcEEE
Confidence 45566665543344455 3344555554443 24666777765421 1 356666777777777
Q ss_pred EcCCCCc
Q 043340 286 IRQTRGL 292 (327)
Q Consensus 286 vR~~~G~ 292 (327)
.....+.
T Consensus 234 a~spL~~ 240 (292)
T 4exb_A 234 VKKALAS 240 (292)
T ss_dssp EECCSCC
T ss_pred EeccccC
Confidence 7665543
No 73
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=24.41 E-value=1.4e+02 Score=30.80 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCCC--------CCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCcccccccc
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEGS--------DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAACG 299 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~--------~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCG 299 (327)
+.+.+.++.+++... ++|.+-||+.+.. .|.....+++.++.++.++.||.+..--++|.|+...+.
T Consensus 164 ~~~~~~~~id~ma~~----K~N~~h~hl~Dd~~~~~~wr~~y~~~~~~~~~elv~ya~~rgI~vv~~i~P~~~~~~~~~ 238 (737)
T 2v5d_A 164 THQDRLDQIKFYGEN----KLNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGD 238 (737)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEECCCSCCSTTTTTC-----CTTHHHHHHHHHHHHHTTCEEEECCCCGGGCCCSSB
T ss_pred CHHHHHHHHHHHHHh----CCeEEEEecccccchhhccCcCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCccccCCCc
Confidence 467888888888763 5666667776531 244334568999999999999999876678888877763
No 74
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=24.23 E-value=4e+02 Score=24.13 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEeeCCCCcC-------Ch---hhHHHHHHHhhhccCCCCccEEEEcCCcHHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPML-------NL---KSVLEAHRCLNKDVQIGQRMITISTVGVPNTI 207 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPll-------n~---~~v~~~i~~l~~~~gi~~r~itisTnG~~~~i 207 (327)
+..+.+++++++....+. +-+-|-+ | ||.+- -. +.+..+++.+++. ++ .|.|.|.=. ..+
T Consensus 47 ~~~~~~~a~~~a~~~v~~---GAdIIDI-G-geSTrPga~~v~~~eE~~Rv~pvI~~l~~~-~v---piSIDT~~~-~Va 116 (294)
T 2dqw_A 47 RYLDPERALERAREMVAE---GADILDL-G-AESTRPGAAPVPVEEEKRRLLPVLEAVLSL-GV---PVSVDTRKP-EVA 116 (294)
T ss_dssp ------CCHHHHHHHHHH---TCSEEEE-E-CC-----------CCHHHHHHHHHHHHHTT-CS---CEEEECSCH-HHH
T ss_pred CCCCHHHHHHHHHHHHHC---CCCEEEE-C-CCcCCCCCCCCCHHHHHHHHHHHHHHHHhC-CC---eEEEECCCH-HHH
Confidence 456677787777665542 4444444 5 54432 12 3355566666533 66 799998532 234
Q ss_pred HHHHhcCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEecc-CCCCC-----CCCCCcHHHH---HHHHHHHH
Q 043340 208 KKLASYKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIPFN-PIEGS-----DYQRPYKKAV---LAFAGALE 278 (327)
Q Consensus 208 ~~L~~~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp~n-p~~~~-----~~~~p~~e~i---~~f~~~L~ 278 (327)
+.-++.| ..+--|+.|.+| + ++++++++.+ +.+-+++.. -.+.. .|...-.+.+ ++-.+.+.
T Consensus 117 ~aAl~aG--a~iINdVsg~~d-~----~m~~v~a~~~--~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~ 187 (294)
T 2dqw_A 117 EEALKLG--AHLLNDVTGLRD-E----RMVALAARHG--VAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRAL 187 (294)
T ss_dssp HHHHHHT--CSEEECSSCSCC-H----HHHHHHHHHT--CEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCEEEECCCCCC-h----HHHHHHHHhC--CCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHH
Confidence 4444554 456667777654 2 4556666655 566666653 11111 2322223333 34455567
Q ss_pred hCCCe
Q 043340 279 SHKIT 283 (327)
Q Consensus 279 ~~gi~ 283 (327)
++|+.
T Consensus 188 ~~Gi~ 192 (294)
T 2dqw_A 188 SAGVP 192 (294)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 78997
No 75
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=23.70 E-value=4.5e+02 Score=24.52 Aligned_cols=139 Identities=11% Similarity=0.058 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCCc--HHH---HHHHH
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV--PNT---IKKLA 211 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG~--~~~---i~~L~ 211 (327)
.+..+.+.+.+....+ .++++|+..| .|| |.+..++=.++++...+..+ ++-.+-+.|.+. ... .+...
T Consensus 76 ~ID~~al~~lv~~li~---~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg~~st~eai~la~~A~ 151 (360)
T 4dpp_A 76 RFDLEAYDDLVNIQIQ---NGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-GSIKVIGNTGSNSTREAIHATEQGF 151 (360)
T ss_dssp SBCHHHHHHHHHHHHH---TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEECCCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEecccccChhhCCHHHHHHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHHHHH
Confidence 4666555555554433 5899999988 489 77787776677776654322 111454445433 222 23333
Q ss_pred hcCCCcceeecccCCCC-cHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcCCC
Q 043340 212 SYKLQSTLAIRSAGVND-QVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQTR 290 (327)
Q Consensus 212 ~~~~~v~lavSI~GvND-~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~ 290 (327)
+.|.+.-+.+ -|-.+. +. +.+.++.+.+- ....++-||-...... .-+.+.+.++. +..--+-|..+-
T Consensus 152 ~~Gadavlvv-~PyY~k~sq---~gl~~hf~~IA--~a~PiilYNiP~rTg~-~ls~e~l~~La----~~pnIvGIKdss 220 (360)
T 4dpp_A 152 AVGMHAALHI-NPYYGKTSI---EGLIAHFQSVL--HMGPTIIYNVPGRTGQ-DIPPRAIFKLS----QNPNLAGVKECV 220 (360)
T ss_dssp HTTCSEEEEE-CCCSSCCCH---HHHHHHHHTTG--GGSCEEEEECHHHHSC-CCCHHHHHHHT----TSTTEEEEEECS
T ss_pred HcCCCEEEEc-CCCCCCCCH---HHHHHHHHHHH--HhCCEEEEeCCcccCC-CCCHHHHHHHh----cCCCEEEEEeCC
Confidence 4444322222 233332 23 34555555432 1123555663221111 22345555543 334445566555
Q ss_pred Cc
Q 043340 291 GL 292 (327)
Q Consensus 291 G~ 292 (327)
|.
T Consensus 221 gd 222 (360)
T 4dpp_A 221 GN 222 (360)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 76
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=22.96 E-value=2.6e+02 Score=23.10 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHHHhcCCcceEEEEeccCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCc
Q 043340 228 DQVEHAVELAELLHEWGRGHHVNLIPFNPIEGS----DYQRPYKKAVLAFAGALESHKITTSIRQTRGL 292 (327)
Q Consensus 228 D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~----~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~ 292 (327)
.+++++.+|++ .+++ ...+|+=+.+..++. ..-.-++++++.|.+.... |+.+++|..+..
T Consensus 87 k~p~d~~~lve--~Gv~-i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~lk~L~~~-Gv~v~~q~vP~d 151 (165)
T 1vsq_C 87 TNPTDVERLVE--GGVK-ITSVNVGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNAR-GIELEVRKVSTD 151 (165)
T ss_dssp SSHHHHHHHHH--TTCC-CSEEEEEECCCCTTSEECSSSCEECHHHHHHHHHHHHT-TCEEEECSSTTS
T ss_pred CCHHHHHHHHH--cCCC-CCEEEECCCcCCCCCeEEeccEeeCHHHHHHHHHHHHC-CCEEEEEECCCC
Confidence 46888888865 4544 356887554433332 2334578999999777654 999999987653
No 77
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=22.65 E-value=1.7e+02 Score=27.70 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcceEEEEeccCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEE
Q 043340 225 GVNDQVEHAVELAELLHEWGRGHHVNLIPFNPIEG-SDYQRPYKKAVLAFAGALESHKITTS 285 (327)
Q Consensus 225 GvND~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~-~~~~~p~~e~i~~f~~~L~~~gi~v~ 285 (327)
++| +.+.+.++++.++..+. .-|..-.|.|... ..|+.+..+.++.+.++.++.|+++.
T Consensus 151 sve-s~e~a~~~a~~~k~aGa-~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~ 210 (385)
T 3nvt_A 151 SVE-SYEQVAAVAESIKAKGL-KLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVI 210 (385)
T ss_dssp BCC-CHHHHHHHHHHHHHTTC-CEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEE
T ss_pred CcC-CHHHHHHHHHHHHHcCC-CeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEE
Confidence 455 58899999999998662 2333334555432 23677888999999999999999974
No 78
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=22.62 E-value=4.5e+02 Score=24.15 Aligned_cols=138 Identities=15% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCCc--HHH---HHHH
Q 043340 138 RNLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV--PNT---IKKL 210 (327)
Q Consensus 138 r~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG~--~~~---i~~L 210 (327)
..+..+.+.+.+....+ .++++|+..| .|| |.+..++-.++++..... .+ .+-+.+.+. ... .+..
T Consensus 42 g~ID~~~l~~lv~~li~---~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~g-rv---pViaGvg~~st~eai~la~~A 114 (344)
T 2hmc_A 42 RTPDFDALVRKGKELIA---DGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKA-GI---PVIVGTGAVNTASAVAHAVHA 114 (344)
T ss_dssp SSBCHHHHHHHHHHHHH---TTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHT-TC---CEEEECCCSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEeCccCcChhhCCHHHHHHHHHHHhCC-CC---cEEEecCCCCHHHHHHHHHHH
Confidence 35666666665555543 5799999988 489 888877777777762121 23 455555443 222 2333
Q ss_pred HhcCCCcceeecccCCCC--cHHHHHHHHHHHHh-cCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEc
Q 043340 211 ASYKLQSTLAIRSAGVND--QVEHAVELAELLHE-WGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIR 287 (327)
Q Consensus 211 ~~~~~~v~lavSI~GvND--~~e~a~~L~~~l~~-l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR 287 (327)
.+.|.+. +.+.-|..+. +.+.+.+-.+-+.+ . ..+.+|=||.. ... ...+.+.+.++. .+..--+-|.
T Consensus 115 ~~~Gada-vlv~~P~y~~~~s~~~l~~~f~~IA~aa---~~lPiilYn~P-~tg-~~l~~e~~~~L~---a~~pnIvGiK 185 (344)
T 2hmc_A 115 QKVGAKG-LMVIPRVLSRGSVIAAQKAHFKAILSAA---PEIPAVIYNSP-YYG-FATRADLFFALR---AEHKNLVGFK 185 (344)
T ss_dssp HHHTCSE-EEECCCCSSSTTCHHHHHHHHHHHHHHS---TTSCEEEEEBG-GGT-BCCCHHHHHHHH---HHCTTEEEEE
T ss_pred HhcCCCE-EEECCCccCCCCCHHHHHHHHHHHHhhC---CCCcEEEEecC-ccC-CCcCHHHHHHHH---hcCCCEEEEE
Confidence 3345432 3333444443 44444433333332 1 12334556632 222 223455666551 2233334455
Q ss_pred CCCC
Q 043340 288 QTRG 291 (327)
Q Consensus 288 ~~~G 291 (327)
.+-|
T Consensus 186 dssg 189 (344)
T 2hmc_A 186 EFGG 189 (344)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 4444
No 79
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.35 E-value=4.2e+02 Score=23.64 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEeeC-CC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMGM-GE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~-GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+..+.+.+.+....+ .++++|+..|. || |.+..++-.++++...+..+ ++-.+-+.|.+
T Consensus 24 ~iD~~~l~~lv~~li~---~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg~ 85 (297)
T 3flu_A 24 SIHYEQLRDLIDWHIE---NGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVA-KRVPVIAGTGA 85 (297)
T ss_dssp CBCHHHHHHHHHHHHH---TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECCC
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 4666666555555443 58999999994 88 56676766667766654211 11145555544
No 80
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=22.16 E-value=4.3e+02 Score=23.71 Aligned_cols=140 Identities=11% Similarity=0.140 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhhccCCCCccEEEEcCCc--HHH---HHHHH
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNKDVQIGQRMITISTVGV--PNT---IKKLA 211 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~~~gi~~r~itisTnG~--~~~---i~~L~ 211 (327)
.+..+.+.+.+.... ..++++|+..| .|| |.+..++-.++++.+.+..+ +...+-+.|.+. ... .+...
T Consensus 31 ~iD~~~l~~lv~~li---~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~~A~ 106 (307)
T 3s5o_A 31 EVDYGKLEENLHKLG---TFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP-KNRLLLAGSGCESTQATVEMTVSMA 106 (307)
T ss_dssp CBCHHHHHHHHHHHT---TSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC-TTSEEEEECCCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH---HcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC-CCCcEEEecCCCCHHHHHHHHHHHH
Confidence 466555555554433 36899999999 488 78888877788887765322 111344455432 222 33333
Q ss_pred hcCCCcceeecccCCC---CcHHHHHHHHHHHHhcCCcceEEEEeccCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEEcC
Q 043340 212 SYKLQSTLAIRSAGVN---DQVEHAVELAELLHEWGRGHHVNLIPFNPIEGSDYQRPYKKAVLAFAGALESHKITTSIRQ 288 (327)
Q Consensus 212 ~~~~~v~lavSI~GvN---D~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~~~~~p~~e~i~~f~~~L~~~gi~v~vR~ 288 (327)
+.|.+. +.+.-|..+ -+.+.+.+-.+-+.+- ..+.+|-||-..... ..-+.+.+.++. +..--+-+..
T Consensus 107 ~~Gada-vlv~~P~y~~~~~s~~~l~~~f~~ia~a---~~lPiilYn~P~~tg-~~l~~~~~~~La----~~pnIvgiKd 177 (307)
T 3s5o_A 107 QVGADA-AMVVTPCYYRGRMSSAALIHHYTKVADL---SPIPVVLYSVPANTG-LDLPVDAVVTLS----QHPNIVGMXD 177 (307)
T ss_dssp HTTCSE-EEEECCCTTGGGCCHHHHHHHHHHHHHH---CSSCEEEEECHHHHS-CCCCHHHHHHHH----TSTTEEEEEE
T ss_pred HcCCCE-EEEcCCCcCCCCCCHHHHHHHHHHHHhh---cCCCEEEEeCCcccC-CCCCHHHHHHHh----cCCCEEEEEc
Confidence 444432 222234444 2444444333333221 233455566322111 223455565553 3333345555
Q ss_pred CCC
Q 043340 289 TRG 291 (327)
Q Consensus 289 ~~G 291 (327)
+-|
T Consensus 178 ssg 180 (307)
T 3s5o_A 178 SGG 180 (307)
T ss_dssp CSC
T ss_pred CCC
Confidence 444
No 81
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=21.24 E-value=1.5e+02 Score=29.82 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHhcCCcceEEEEeccCCCCC--------CCCCCcHHHHHHHHHHHHhCCCeEEEcCCCCccccccc
Q 043340 229 QVEHAVELAELLHEWGRGHHVNLIPFNPIEGS--------DYQRPYKKAVLAFAGALESHKITTSIRQTRGLDASAAC 298 (327)
Q Consensus 229 ~~e~a~~L~~~l~~l~~~~~vnLIp~np~~~~--------~~~~p~~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaC 298 (327)
+.+.+.++.+++... ++|.+-||+.+.. .|+....+++.++.++.++.||.+..--++|.|+...+
T Consensus 164 ~~~~ik~~id~ma~~----KlN~~h~Hl~DDq~~~~~wr~~Yp~~~~~~i~elv~yA~~rgI~vv~~i~Pe~d~~~~~ 237 (594)
T 2v5c_A 164 THQDRLDQIKFYGEN----KLNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDG 237 (594)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECCTTCGGGTTTTTSCCCGGGHHHHHHHHHHHHHTTCEEEEEECGGGTCCCST
T ss_pred CHHHHHHHHHHHHHh----CCcEEEEecccCcccccccCCCCCHHHHHHHHHHHHHHHHCCcEEEEecCCCccccCCC
Confidence 467888888887763 5666667775431 24433356899999999999999975557788887766
No 82
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase fold, endopeptidase, serine MOD hepes buffer molecule, hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Probab=21.21 E-value=80 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=26.0
Q ss_pred ceEEEeeCCCCcCChhhHHHHHHHhhhccCC
Q 043340 161 TNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI 191 (327)
Q Consensus 161 ~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi 191 (327)
.++++.|.|+|++..+.+.++++.+++ .|+
T Consensus 68 Gdl~l~G~GDP~l~~~~l~~la~~l~~-~Gi 97 (418)
T 3v39_A 68 YDIHIEGSRDPLFGRNMSYFLISELNR-MKI 97 (418)
T ss_dssp EEEEEECCCCTTCSHHHHHHHHHHHHH-TTC
T ss_pred ceEEEEeCCCCCcCHHHHHHHHHHHHH-cCC
Confidence 589999999999999999999998864 576
No 83
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=21.00 E-value=2.7e+02 Score=27.38 Aligned_cols=106 Identities=8% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCcceEEEeeCCCCcCChhhHHHHHHHhhhccCCCC--ccEEEEcCCc------------HHHHH
Q 043340 143 HEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQ--RMITISTVGV------------PNTIK 208 (327)
Q Consensus 143 ~EIv~qv~~~~~~~~~~v~~Ivf~G~GEPlln~~~v~~~i~~l~~~~gi~~--r~itisTnG~------------~~~i~ 208 (327)
+.+.+.+..+.+.+ +.+.|.+.+-.-|-+-=+.+..+++.+++..+++. .-+.++|.|+ ..-++
T Consensus 129 ~kL~~aI~~~~~~~--~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~ip~~~~Vv~v~tpgf~Gs~~~G~~~a~~alv~ 206 (523)
T 3u7q_B 129 QNMKDGLQNCKATY--KPDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIAR 206 (523)
T ss_dssp HHHHHHHHHHHHHH--CCSEEEEEECHHHHHHTCCHHHHHHHHHHTTSSCTTSCCCBCCCCTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCEEEEeCCcHHHHhcCCHHHHHHHHHHhcCCCCCceEEEeeCCCCCCChhHHHHHHHHHHHH
Q ss_pred HHHh-------cCCCcceeecccCCCCcHHHHHHHHHHHHhcCCcceEEEEe
Q 043340 209 KLAS-------YKLQSTLAIRSAGVNDQVEHAVELAELLHEWGRGHHVNLIP 253 (327)
Q Consensus 209 ~L~~-------~~~~v~lavSI~GvND~~e~a~~L~~~l~~l~~~~~vnLIp 253 (327)
.+.+ ...+-.+.| |+|+|..+.|+++|.++++.++ ..++.+|
T Consensus 207 ~l~~~~~~~~~~~~~~~VNI-ig~~~~~~gD~~elkrlL~~~G--i~v~~lp 255 (523)
T 3u7q_B 207 YFTLKSMDDKVVGSNKKINI-VPGFETYLGNFRVIKRMLSEMG--VGYSLLS 255 (523)
T ss_dssp HHHGGGGGGCCTTTTCCEEE-ECCSCCCHHHHHHHHHHHHHTT--CCEEESS
T ss_pred HhcccccccccCCCCCeEEE-ECCCCCChhHHHHHHHHHHHcC--CeEEEec
No 84
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.93 E-value=4.7e+02 Score=23.65 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcceEEEee-CCC-CcCChhhHHHHHHHhhh
Q 043340 139 NLSSHEIVGQVLAIEEIFKHRVTNVVFMG-MGE-PMLNLKSVLEAHRCLNK 187 (327)
Q Consensus 139 ~lt~~EIv~qv~~~~~~~~~~v~~Ivf~G-~GE-Plln~~~v~~~i~~l~~ 187 (327)
.+..+.+.+.+....+ .++++|+..| .|| |.+..++-.++++...+
T Consensus 39 ~iD~~~l~~li~~li~---~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~ 86 (315)
T 3si9_A 39 AIDEKAFCNFVEWQIT---QGINGVSPVGTTGESPTLTHEEHKRIIELCVE 86 (315)
T ss_dssp CBCHHHHHHHHHHHHH---TTCSEEECSSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEeCccccCccccCHHHHHHHHHHHHH
Confidence 4666666665555443 5899999998 477 56677766667766654
No 85
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=20.55 E-value=4.7e+02 Score=23.55 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCcceEEEeeC--CCCcCChhhHHHHHHHhhhccCCCCccEEEEcCC
Q 043340 140 LSSHEIVGQVLAIEEIFKHRVTNVVFMGM--GEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVG 202 (327)
Q Consensus 140 lt~~EIv~qv~~~~~~~~~~v~~Ivf~G~--GEPlln~~~v~~~i~~l~~~~gi~~r~itisTnG 202 (327)
.+.+.+.+.+...++.++ ++.|-+.-+ =+|....+.+.++++.+++. |. .|+|.||+-.
T Consensus 111 ~s~~~i~~~~e~SL~rL~--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~-Gk-ir~iGvSn~~ 171 (346)
T 3n6q_A 111 GSRKYLLASLDQSLKRMG--LEYVDIFYSHRVDENTPMEETASALAHAVQS-GK-ALYVGISSYS 171 (346)
T ss_dssp SCHHHHHHHHHHHHHHHT--CSCEEEEEECSCCTTSCHHHHHHHHHHHHHT-TS-EEEEEEESCC
T ss_pred CCHHHHHHHHHHHHHHhC--CCcEeEEEEeCCCCCCCHHHHHHHHHHHHHc-CC-eeEEEeCCCC
Confidence 377788888877776664 333333332 23333345566666666543 43 3567776543
Done!