BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043341
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 299 bits (765), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 190/542 (35%), Positives = 291/542 (53%), Gaps = 35/542 (6%)
Query: 231 KAGSRPS------FEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
+A +RP+ + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ
Sbjct: 3 EAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQC 62
Query: 285 IVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYV 343
+RFDDTNP KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYV
Sbjct: 63 NLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV 122
Query: 344 DDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399
D+ EQ+++ R G S R+ S+EEN+ L+++M AG + CLR K+DM P
Sbjct: 123 DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP 182
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+RDPV YR HH+ G+K+ +YP YDF DA EGITH+LR+ E+ D Y
Sbjct: 183 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLRTLEFQDNRRLYD 242
Query: 460 RIQEDLGVRKVHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517
+ +++ + VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG
Sbjct: 243 WVLDNITI-PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 301
Query: 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPD 577
++ +F G +K N +E L + ++ ++ PR AVI+ ++++ G
Sbjct: 302 YTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEG 361
Query: 578 KPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV- 630
+ + +P H G + ++ IWID AD + AN++ + G NA V
Sbjct: 362 E--MVTMPNHPNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVI 418
Query: 631 --KEISRDQDGNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYL 681
+ + +D +GN+T + + K+ K + W+ + L V + L +D L
Sbjct: 419 KAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRL 476
Query: 682 ITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSK 741
+ +DFL V+NP + + ++++ G+ Q ER+GYF D + + K
Sbjct: 477 FSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEK 536
Query: 742 PV 743
PV
Sbjct: 537 PV 538
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 295 bits (756), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 290/542 (53%), Gaps = 35/542 (6%)
Query: 231 KAGSRPS------FEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
+A +RP+ + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ
Sbjct: 3 EAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQC 62
Query: 285 IVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYV 343
+RFDDTNP KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYV
Sbjct: 63 NLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV 122
Query: 344 DDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399
D+ EQ+++ R G S R+ S+EEN+ L+++M AG + CLR K+DM P
Sbjct: 123 DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP 182
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+RDPV YR HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y
Sbjct: 183 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYD 242
Query: 460 RIQEDLGVRKVHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517
+ +++ + VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG
Sbjct: 243 WVLDNITI-PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 301
Query: 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPD 577
++ +F G +K N +E L + ++ ++ PR AVI+ ++++ G
Sbjct: 302 YTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEG 361
Query: 578 KPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV- 630
+ + +P H G + ++ IWID AD + AN++ + G NA V
Sbjct: 362 E--MVTMPNHPNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVI 418
Query: 631 --KEISRDQDGNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYL 681
+ + +D +GN+T + + K+ K + W+ + L V + L +D L
Sbjct: 419 KAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRL 476
Query: 682 ITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSK 741
+ +DFL V+NP + + ++++ G+ Q ER+GYF D + + K
Sbjct: 477 FSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEK 536
Query: 742 PV 743
PV
Sbjct: 537 PV 538
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 295 bits (756), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 290/542 (53%), Gaps = 35/542 (6%)
Query: 231 KAGSRPS------FEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
+A +RP+ + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ
Sbjct: 3 EAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQC 62
Query: 285 IVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYV 343
+RFDDTNP KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYV
Sbjct: 63 NLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV 122
Query: 344 DDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399
D+ EQ+++ R G S R+ S+EEN+ L+++M AG + CLR K+DM P
Sbjct: 123 DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP 182
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+RDPV YR HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y
Sbjct: 183 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYD 242
Query: 460 RIQEDLGVRKVHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517
+ +++ + VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG
Sbjct: 243 WVLDNITI-PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 301
Query: 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPD 577
++ +F G +K N +E L + ++ ++ PR AVI+ ++++ G
Sbjct: 302 YTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEG 361
Query: 578 KPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV- 630
+ + +P H G + ++ IWID AD + AN++ + G NA V
Sbjct: 362 E--MVTMPNHPNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVI 418
Query: 631 --KEISRDQDGNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYL 681
+ + +D +GN+T + + K+ K + W+ + L V + L +D L
Sbjct: 419 KAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRL 476
Query: 682 ITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSK 741
+ +DFL V+NP + + ++++ G+ Q ER+GYF D + + K
Sbjct: 477 FSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEK 536
Query: 742 PV 743
PV
Sbjct: 537 PV 538
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 295 bits (756), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 290/542 (53%), Gaps = 35/542 (6%)
Query: 231 KAGSRPS------FEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
+A +RP+ + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ
Sbjct: 2 EAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQC 61
Query: 285 IVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYV 343
+RFDDTNP KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYV
Sbjct: 62 NLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV 121
Query: 344 DDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399
D+ EQ+++ R G S R+ S+EEN+ L+++M AG + CLR K+DM P
Sbjct: 122 DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP 181
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+RDPV YR HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y
Sbjct: 182 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYD 241
Query: 460 RIQEDLGVRKVHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517
+ +++ + VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG
Sbjct: 242 WVLDNITI-PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 300
Query: 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPD 577
++ +F G +K N +E L + ++ ++ PR AVI+ ++++ G
Sbjct: 301 YTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEG 360
Query: 578 KPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV- 630
+ + +P H G + ++ IWID AD + AN++ + G NA V
Sbjct: 361 E--MVTMPNHPNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVI 417
Query: 631 --KEISRDQDGNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYL 681
+ + +D +GN+T + + K+ K + W+ + L V + L +D L
Sbjct: 418 KAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRL 475
Query: 682 ITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSK 741
+ +DFL V+NP + + ++++ G+ Q ER+GYF D + + K
Sbjct: 476 FSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEK 535
Query: 742 PV 743
PV
Sbjct: 536 PV 537
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 295 bits (756), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 187/532 (35%), Positives = 285/532 (53%), Gaps = 29/532 (5%)
Query: 235 RPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPA 294
R + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ +RFDDTNP
Sbjct: 5 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 64
Query: 295 KESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQK 353
KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYVD+ EQ+++
Sbjct: 65 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 124
Query: 354 ER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYY 409
R G S R+ S+EEN+ L+++M AG + CLR K+DM P +RDPV Y
Sbjct: 125 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 184
Query: 410 RCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK 469
R HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y + +++ +
Sbjct: 185 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITI-P 243
Query: 470 VHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFI 527
VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG ++ +F
Sbjct: 244 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 303
Query: 528 LEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRH 587
G +K N +E L + ++ ++ PR AVI+ ++++ G + + +P H
Sbjct: 304 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGE--MVTMPNH 361
Query: 588 KKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV---KEISRDQD 638
G + ++ IWID AD + AN++ + G NA V + + +D +
Sbjct: 362 PNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVIKAERVEKDAE 420
Query: 639 GNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYLITKKKLEEGE 691
GN+T + + K+ K + W+ + L V + L +D L + +
Sbjct: 421 GNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRLFSVPNPGAAD 478
Query: 692 DFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
DFL V+NP + + ++++ G+ Q ER+GYF D + + KPV
Sbjct: 479 DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 530
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 295 bits (754), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 189/542 (34%), Positives = 289/542 (53%), Gaps = 35/542 (6%)
Query: 231 KAGSRPS------FEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
+A +RP+ + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ
Sbjct: 2 EAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQC 61
Query: 285 IVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYV 343
+RFDDTNP KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYV
Sbjct: 62 NLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV 121
Query: 344 DDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399
D+ EQ ++ R G S R+ S+EEN+ L+++M AG + CLR K+DM P
Sbjct: 122 DELTPEQTREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP 181
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+RDPV YR HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y
Sbjct: 182 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYD 241
Query: 460 RIQEDLGVRKVHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517
+ +++ + VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG
Sbjct: 242 WVLDNITI-PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRG 300
Query: 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPD 577
++ +F G +K N +E L + ++ ++ PR AVI+ ++++ G
Sbjct: 301 YTAASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEG 360
Query: 578 KPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV- 630
+ + +P H G + ++ IWID AD + AN++ + G NA V
Sbjct: 361 E--MVTMPNHPNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVI 417
Query: 631 --KEISRDQDGNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYL 681
+ + +D +GN+T + + K+ K + W+ + L V + L +D L
Sbjct: 418 KAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRL 475
Query: 682 ITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSK 741
+ +DFL V+NP + + ++++ G+ Q ER+GYF D + + K
Sbjct: 476 FSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEK 535
Query: 742 PV 743
PV
Sbjct: 536 PV 537
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 294 bits (752), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 186/532 (34%), Positives = 285/532 (53%), Gaps = 29/532 (5%)
Query: 235 RPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPA 294
R + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ +RFDDTNP
Sbjct: 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 71
Query: 295 KESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQK 353
KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYVD+ EQ+++
Sbjct: 72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 131
Query: 354 ER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYY 409
R G S R+ S+EEN+ L+++M AG + CLR K+DM P +RDPV Y
Sbjct: 132 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 191
Query: 410 RCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK 469
R HH+ G+K+ +YP YDF DA EGITH+L + E+ + Y + +++ +
Sbjct: 192 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQNNRRLYDWVLDNITI-P 250
Query: 470 VHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFI 527
VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG ++ +F
Sbjct: 251 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 310
Query: 528 LEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRH 587
G +K N +E L + ++ ++ PR AVI+ ++++ G + + +P H
Sbjct: 311 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGE--MVTMPNH 368
Query: 588 KKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV---KEISRDQD 638
G + ++ IWID AD + AN++ + G NA V + + +D +
Sbjct: 369 PNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVIKAERVEKDAE 427
Query: 639 GNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYLITKKKLEEGE 691
GN+T + + K+ K + W+ + L V + L +D L + +
Sbjct: 428 GNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRLFSVPNPGAAD 485
Query: 692 DFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
DFL V+NP + + ++++ G+ Q ER+GYF D + + KPV
Sbjct: 486 DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 186/532 (34%), Positives = 284/532 (53%), Gaps = 29/532 (5%)
Query: 235 RPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPA 294
R + DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ +RFDDTNP
Sbjct: 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 71
Query: 295 KESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQK 353
KE E+V+++ D+E LG + V Y+SDYF L A LI +G AYVD+ EQ+++
Sbjct: 72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 131
Query: 354 ER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYY 409
R G S R+ S+EEN+ L+++M AG + CLR K+DM P +RDPV Y
Sbjct: 132 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 191
Query: 410 RCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK 469
R HH+ G+K+ +YP YDF DA EGITH+L + E+ Y + +++ +
Sbjct: 192 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQGNRRLYDWVLDNITI-P 250
Query: 470 VHI--YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFI 527
VH YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG ++ +F
Sbjct: 251 VHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFC 310
Query: 528 LEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRH 587
G +K N +E L + ++ ++ PR AVI+ ++++ G + + +P H
Sbjct: 311 KRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGE--MVTMPNH 368
Query: 588 KKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWG------NAIV---KEISRDQD 638
G + ++ IWID AD + AN++ + G NA V + + +D +
Sbjct: 369 PNKPEMGSRQVPFSGEIWIDRADFRE-EANKQYKRLVLGKEVRLRNAYVIKAERVEKDAE 427
Query: 639 GNVTQLSGFLHLEGSVKN------TKLKLTWLPETNEL-VNLTLVGFDYLITKKKLEEGE 691
GN+T + + K+ K + W+ + L V + L +D L + +
Sbjct: 428 GNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL--YDRLFSVPNPGAAD 485
Query: 692 DFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
DFL V+NP + + ++++ G+ Q ER+GYF D + + KPV
Sbjct: 486 DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 191/344 (55%), Gaps = 6/344 (1%)
Query: 238 FEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKES 297
E DL + +V RF P+PSGY H+GH A+LL+ A++Y GQ +R DDTNP
Sbjct: 55 IERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELAR 114
Query: 298 NEFVDNLLKDIETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM 356
E+VD++ D++ LG+ + E Y SDYF AE LIRQG AYV+ E++ + R
Sbjct: 115 QEYVDSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRG 174
Query: 357 D----GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCN 412
+ G S R+ S+EEN+ L + M AG E LR K+D+ PN LRDPV YR
Sbjct: 175 NATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIV 234
Query: 413 PIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVH 471
PH R ++ +YP YDF P DA EG+TH++ S E+ D A Y + E L + H
Sbjct: 235 NKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPH 294
Query: 472 IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQG 531
YEF R + YT+ SKRKL VQ G+V GWDDPR PT++ R G+ EA+ F + G
Sbjct: 295 QYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIG 354
Query: 532 ASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDG 575
S+ ++ + ++ PR AV++ +V LT DG
Sbjct: 355 VSRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDG 398
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 168/313 (53%), Gaps = 4/313 (1%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
G+V LRFAP PSG LHIGH++AA+LN +A++Y G+LI+R +DT+P + E D + D
Sbjct: 95 GEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPAD 154
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
+E LG++++ SD E E LI +G AYV E+ ++ + G CR+
Sbjct: 155 LEWLGVEWDETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLG 214
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
EN++ W+EM E +R K D+ PN ++RD V R H R G++Y+VYP
Sbjct: 215 FRENLQRWREMFEMKEGS--AVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYP 272
Query: 428 TYDFACPFVDAKEGITHALRSSEY-HDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLS 486
+F+ D G+TH LR ++ +R Q Y + LG + RL M LS
Sbjct: 273 MMNFSVAVDDHLLGVTHVLRGKDHLANREKQEY-LYRHLGWEPPEFIHYGRLKMDDVALS 331
Query: 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWT 546
+ G+ GWDDPR T++ I RRG+ EA+ + ++E G + M W K++
Sbjct: 332 TSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYG 391
Query: 547 INKKIIDPVCPRH 559
+N+ I++ R+
Sbjct: 392 LNRSILEEEARRY 404
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 15/216 (6%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
VR+RFAP P+G+LH+G ++ AL N FA++ +G+ I+R +DT+ + E+ + L + +
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 310 TLGIKY-ETVTYTSDYFP--------DLMEMAENLIRQGKAYVDDTPREQMQKERMDGI- 359
LG+ + E D+ P E AE L+++GKAY E++++ R +
Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEXREKLLS 133
Query: 360 ESKCRNNSIE--ENMKLWKEMIAGSERGLECCLRGKLDMQD--PNKSLRDPVYYRCNPIP 415
E K + S E E + E+GL + K +D N ++ V ++ I
Sbjct: 134 EGKAPHYSQEXFEKFDTPERRREYEEKGLRPAVFFKXPRKDYVLNDVVKGEVVFKTGAIG 193
Query: 416 HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
I + PTY+FAC D ITH +R ++
Sbjct: 194 DFVI-XRSNGLPTYNFACVVDDXLXEITHVIRGDDH 228
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 151/361 (41%), Gaps = 57/361 (15%)
Query: 221 GVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRY 280
G D+ E G R FE+ VR+RFAP P+G+LH+G ++ AL N FA++
Sbjct: 6 GAFFDILEVGPKKIRRCFEL---------VRVRFAPSPTGHLHVGGARTALFNWMFARKE 56
Query: 281 QGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFP--------DLMEM 331
G+ I+R +DT+ + S E+ +L+ + G+ + E D+ P E
Sbjct: 57 GGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREY 116
Query: 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391
AE L+ +AY +E KE E + + +++ G + E L+
Sbjct: 117 AEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPG-KTSFEDLLK 175
Query: 392 GKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
G ++ N +L D + + N +PTY+FA D I+H R ++
Sbjct: 176 GYMEFD--NSTLEDFIIMKSNG------------FPTYNFAVVVDDHLMRISHVFRGEDH 221
Query: 452 HDRNAQYYRIQEDLGVRK-VHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV 510
+ I E G V ++ L T LSKR +G +V
Sbjct: 222 LSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR-------HGAT---------SV 265
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI--IDPVCPRHTAVIEDRRV 568
+ R G+L AL+ ++ G +E D+++TI +K+ DP + VI D +
Sbjct: 266 EHFRREGILSRALMNYLALLGWR-----VEGDEIFTIEEKLQSFDPKDISNKGVIFDYQK 320
Query: 569 L 569
L
Sbjct: 321 L 321
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 151/361 (41%), Gaps = 57/361 (15%)
Query: 221 GVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRY 280
G D+ E G R FE+ VR+RFAP P+G+LH+G ++ AL N FA++
Sbjct: 5 GAFFDILEVGPKKIRRCFEL---------VRVRFAPSPTGHLHVGGARTALFNWMFARKE 55
Query: 281 QGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFP--------DLMEM 331
G+ I+R +DT+ + S E+ +L+ + G+ + E D+ P E
Sbjct: 56 GGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREY 115
Query: 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391
AE L+ +AY +E KE E + + +++ G + E L+
Sbjct: 116 AEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPG-KTSFEDLLK 174
Query: 392 GKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
G ++ N +L D + + N +PTY+FA D I+H R ++
Sbjct: 175 GYMEFD--NSTLEDFIIMKSNG------------FPTYNFAVVVDDHLMRISHVFRGEDH 220
Query: 452 HDRNAQYYRIQEDLGVRK-VHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV 510
+ I E G V ++ L T LSKR +G +V
Sbjct: 221 LSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR-------HGAT---------SV 264
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI--IDPVCPRHTAVIEDRRV 568
+ R G+L AL+ ++ G +E D+++TI +K+ DP + VI D +
Sbjct: 265 EHFRREGILSRALMNYLALLGWR-----VEGDEIFTIEEKLQSFDPKDISNKGVIFDYQK 319
Query: 569 L 569
L
Sbjct: 320 L 320
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 151/361 (41%), Gaps = 57/361 (15%)
Query: 221 GVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRY 280
G D+ E G R FE+ VR+RFAP P+G+LH+G ++ AL N FA++
Sbjct: 110 GAFFDILEVGPKKIRRCFEL---------VRVRFAPSPTGHLHVGGARTALFNWMFARKE 160
Query: 281 QGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFP--------DLMEM 331
G+ I+R +DT+ + S E+ +L+ + G+ + E D+ P E
Sbjct: 161 GGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREY 220
Query: 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391
AE L+ +AY +E KE E + + +++ G + E L+
Sbjct: 221 AEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPG-KTSFEDLLK 279
Query: 392 GKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
G ++ N +L D + + N +PTY+FA D I+H R ++
Sbjct: 280 GYMEFD--NSTLEDFIIMKSNG------------FPTYNFAVVVDDHLMRISHVFRGEDH 325
Query: 452 HDRNAQYYRIQEDLGVRK-VHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV 510
+ I E G V ++ L T LSKR +G +V
Sbjct: 326 LSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR-------HGAT---------SV 369
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI--IDPVCPRHTAVIEDRRV 568
+ R G+L AL+ ++ G +E D+++TI +K+ DP + VI D +
Sbjct: 370 EHFRREGILSRALMNYLALLGWR-----VEGDEIFTIEEKLQSFDPKDISNKGVIFDYQK 424
Query: 569 L 569
L
Sbjct: 425 L 425
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 117/265 (44%), Gaps = 29/265 (10%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
R AP P+G H+G + AL N +A+R G+ IVR +DT+ A+ + +L ++ LG
Sbjct: 5 RIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLG 64
Query: 313 IKYE--------TVTY-TSDYFPDLMEMAENLIRQGKAY-VDDTPR--EQMQKERMDGIE 360
+ Y+ T Y S+ P + AE L+++G AY +TP EQ++KE+ G +
Sbjct: 65 LSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK-GGYD 123
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL---DMQDPNKSLRDPVYYRCNPIPHH 417
+ RN EE + + RG +R K+ + LR V Y IP
Sbjct: 124 GRARNIPPEEAEE-------RARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV 176
Query: 418 RIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSR 477
+ K YPTY A D G+T +R+ E+ + + G Y
Sbjct: 177 -VLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 478 L-NMVYTLLSKRK----LLWFVQNG 497
L N T +SKRK L W+ G
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEG 260
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 142/339 (41%), Gaps = 43/339 (12%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
VR+R AP P+G LHIG ++ A+ N +A+ G+ I+R +DT+ + E+ +N+L+ ++
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 310 TLGIKYETVTYTSDYFPDLMEMA-ENLIRQGKAY--------VDDTPREQMQKERMDGIE 360
LG+ ++ Y DL A + L+ +G AY ++ EQ K + +
Sbjct: 62 WLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYD 121
Query: 361 SKCRNNSIEENMKLWKEMIAG----------SERGLEC--CLRGKLDMQDPNKSLRDPVY 408
++ R+ + EE AG +R +E +RG++ Q + D V
Sbjct: 122 NRHRHLTPEEQAAF---EAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLG-GDMVI 177
Query: 409 YRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR 468
R P IG YP Y+ D GIT +R ++ + + E LG
Sbjct: 178 ARA--APRGEIG-----YPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGAT 230
Query: 469 KVHIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV---------QGIVRRGL 518
+ LN LSKR + + + + G+ P +G+
Sbjct: 231 PPNFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290
Query: 519 LVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCP 557
L A F E+ +K +WDKL +N++ I + P
Sbjct: 291 LDLAAKHFSFER-INKAGARFDWDKLNWLNRQYIQQLEP 328
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 31/241 (12%)
Query: 243 PDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVD 302
P + VR RFAP P+G++H+G+ ++AL FA++ +G ++R +DT+ + S E VD
Sbjct: 19 PGSMTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVD 78
Query: 303 NLLKDIETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQM----QKERMD 357
+L+ + LG+ Y E Y E+ + +G Y E++ +++R
Sbjct: 79 AILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYPXYMSTEELDALRERQRAA 138
Query: 358 GIESKCRNNSIEENMKLWKEMIAGSERGL------------ECCLRGKLDMQDPNKSLRD 405
G + + E K+ E AG L + ++G++++ N+ L D
Sbjct: 139 GEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEIS--NEELDD 196
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL 465
V R + P Y+F D GITH +R ++ + + I L
Sbjct: 197 LVVARPDGT------------PMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRAL 244
Query: 466 G 466
G
Sbjct: 245 G 245
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 115/265 (43%), Gaps = 29/265 (10%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
R AP P+G H+G + AL N +A+R G+ IVR +DT+ A+ + +L ++ LG
Sbjct: 5 RIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLG 64
Query: 313 IKYET---------VTYTSDYFPDLMEMAENLIRQGKAY-VDDTPR--EQMQKERMDGIE 360
+ Y+ S+ P + AE L+++G AY +TP EQ++KE+ G +
Sbjct: 65 LSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEK-GGYD 123
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL---DMQDPNKSLRDPVYYRCNPIPHH 417
+ RN EE + + RG +R K+ + LR V Y IP
Sbjct: 124 GRARNIPPEEAEE-------RARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV 176
Query: 418 RIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSR 477
+ K YPTY A D G+T +R+ E+ + + G Y
Sbjct: 177 -VLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 478 L-NMVYTLLSKRK----LLWFVQNG 497
L N T +SKRK L W+ G
Sbjct: 236 LRNPDKTKISKRKSHTSLDWYKAEG 260
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 39/228 (17%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
R+R+AP P+G HIG + AL N +FA+ G+ ++R +DT+ ++ S E ++L ++
Sbjct: 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLK 84
Query: 310 TLGIKY-ETVTYTSDYFPDLM--------EMAENLIRQGKAYVDDTPREQMQKERM---- 356
LGI + E DY P + + A+ LI G AY E++++ +
Sbjct: 85 WLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNI 144
Query: 357 ----DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD--------PNKSLR 404
G + CRN S EE + I R + L G D NK +
Sbjct: 145 NKMPPGYDRHCRNLSNEEVENALIKKIKPVVR-FKIPLEGDTSFDDILLGRITWANKDIS 203
Query: 405 -DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
DPV + + + PTY A D ITH LR+ E+
Sbjct: 204 PDPVILKSDGL------------PTYHLANVVDDYLMKITHVLRAQEW 239
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
VR+RF P P+G H+G + AL N +A+ G + R +DT+ ++S E LL +
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 310 TLGIKY-ETVTYTSDYFP--------DLMEMAENLIRQGKAY-VDDTPREQMQKERMDGI 359
LG+ + E Y P ++ L+ G+AY TP E + G
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGR 141
Query: 360 ESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP--NKSLRDPVYYRCNPIPHH 417
K ++ + ++ + +E G + +R ++ D N +R PV + +P
Sbjct: 142 NPKLGYDNFDRHLTDAQRAAYLAE-GRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDF 200
Query: 418 RIGSKYKVYPTYDFACPFVDAKEGITHALRSSE 450
+ ++ P Y P DA ITH LR +
Sbjct: 201 AL-TRASGDPLYTLVNPCDDALMKITHVLRGED 232
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
VR+RF P P+G H+G + AL N +A+ G + R +DT+ ++S E LL +
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 310 TLGIKY-ETVTYTSDYFP--------DLMEMAENLIRQGKAY-VDDTPREQMQKERMDGI 359
LG+ + E Y P ++ L+ G+AY TP E + G
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGR 141
Query: 360 ESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP--NKSLRDPVYYRCNPIPHH 417
K ++ + ++ + +E G + +R ++ D N +R PV + +P
Sbjct: 142 NPKLGYDNFDRHLTDAQRAAYLAE-GRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDF 200
Query: 418 RIGSKYKVYPTYDFACPFVDAKEGITHALRSSE 450
+ ++ P Y P DA ITH LR +
Sbjct: 201 AL-TRASGDPLYTLVNPCDDALMKITHVLRGED 232
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
VR+RF P P+G H+G + AL N +A+ G + R +DT+ ++S E LL +
Sbjct: 7 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 66
Query: 310 TLGIKY-ETVTYTSDYFP--------DLMEMAENLIRQGKAY-VDDTPREQMQKERMDGI 359
LG+ + E Y P ++ L+ G+AY TP E + G
Sbjct: 67 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGR 126
Query: 360 ESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP--NKSLRDPVYYRCNPIPHH 417
K ++ + ++ + +E G + +R ++ D N +R PV + +P
Sbjct: 127 NPKLGYDNFDRHLTDAQRAAYLAE-GRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDF 185
Query: 418 RIGSKYKVYPTYDFACPFVDAKEGITHALRSSE 450
+ ++ P Y P DA ITH LR +
Sbjct: 186 AL-TRASGDPLYTLVNPCDDALMKITHVLRGED 217
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia Coli
Yadb Orf
pdb|4A91|A Chain A, Crystal Structure Of The Glutamyl-Queuosine Trnaasp
Synthetase From E.Coli Complexed With L-Glutamate
Length = 298
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
RFAP PSG LH G AAL + A+ QG+ +VR +D +P +E + +L+ +E G
Sbjct: 9 RFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYG 68
Query: 313 IKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGI-ESKCR 364
+ ++ V + S E L QG +Y R ++Q + GI + CR
Sbjct: 69 LHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQS--IGGIYDGHCR 120
>pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
pdb|2UZ8|B Chain B, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
Length = 174
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 75 PTFSFSNGSKLQGTYVLLRYIGRVGN---FYGQNAYEAGEIDEWLDY--TPV--FSSGSE 127
P +NG L G + ++ + N G A E + +WL+Y T V SS ++
Sbjct: 31 PVLQTNNGPSLXGLTTIAAHLVKQANKEYLLGSTAEEKAXVQQWLEYRVTQVDGHSSKND 90
Query: 128 FENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD---SLRKSKKYQNLVRWF 184
++ YLE + ++ G++ ++ DI ++ L R+ ++++ +KY N+ RWF
Sbjct: 91 IHTLLXDLNSYLEDKVYLTGYNFTLADILLYYGL----HRFIVDLTVQEKEKYLNVSRWF 146
>pdb|4GLT|A Chain A, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|B Chain B, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|C Chain C, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|D Chain D, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
Length = 225
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFN 185
++ E +D+ LE+R + V S S+ DIA+ L R+ L ++Y NL R +
Sbjct: 150 NKVERGLRRMDQDLEKRKWCVNESFSLADIAVGCMLGYLELRYQHLDWKQQYPNLARHYA 209
Query: 186 SL 187
++
Sbjct: 210 AM 211
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 123 SSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS----KKYQ 178
+ + + A +DK+LE + +V G +L++ D+++ ++++ SL S KKY
Sbjct: 127 AKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVS-------SLEASDIDFKKYA 179
Query: 179 NLVRWFNSLSA 189
N+ RW+ ++ +
Sbjct: 180 NVKRWYETVKS 190
>pdb|2HRA|A Chain A, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HRA|B Chain B, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
Length = 209
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 111 EIDEWLDYTP---VFSSGSEFENACTYVDKYLERRTFVVGH-SLSIVDIAIWSALAGTGQ 166
++ +W++ V + ++ + +D L RTF++G S D+A W AL G
Sbjct: 92 QVAKWVNLAQKELVIKNFAKLSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNGM 151
Query: 167 RWDSLRKSKKYQNLVRWFNSL 187
S+ K+K N+ RW+ L
Sbjct: 152 -CGSIIKNKVDVNVSRWYTLL 171
>pdb|2HRK|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
pdb|2HSM|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
Length = 207
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 111 EIDEWLDYTP---VFSSGSEFENACTYVDKYLERRTFVVGH-SLSIVDIAIWSALAGTGQ 166
++ +W++ V + ++ + +D L RTF++G S D+A W AL G
Sbjct: 90 QVAKWVNLAQKELVIKNFAKLSQSLETLDSQLNLRTFILGGLKYSAADVACWGALRSNGM 149
Query: 167 RWDSLRKSKKYQNLVRWFNSL 187
S+ K+K N+ RW+ L
Sbjct: 150 -CGSIIKNKVDVNVSRWYTLL 169
>pdb|4EXJ|A Chain A, Crystal Structure Of Glutathione S-Transferase Like
Protein Lelg_03239 (Target Efi-501752) From Lodderomyces
Elongisporus
pdb|4EXJ|B Chain B, Crystal Structure Of Glutathione S-Transferase Like
Protein Lelg_03239 (Target Efi-501752) From Lodderomyces
Elongisporus
Length = 238
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 107 YEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQ 166
Y+ G IDE + + S FE +++ L R + VG +IVDIA L G +
Sbjct: 122 YQNGHIDENIAQYVL----SSFEKVFAFMETKLSGRDWFVGDKFTIVDIAF---LVGEHR 174
Query: 167 RWDSLRKS-------KKYQNLVRWF 184
R + L S + + N+ +WF
Sbjct: 175 RRERLHNSPIWIDLKENFPNVEKWF 199
>pdb|3O76|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
pdb|3O76|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
Length = 209
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 61 LAGITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEID 113
+ G+ PT G P F + + Q +LR++GR YG+N EA ++D
Sbjct: 39 MQGLLKPTALYGQLPKFEDGDLTLYQSN-AILRHLGRSLGLYGKNQREAAQMD 90
>pdb|1GTI|A Chain A, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|B Chain B, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|C Chain C, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|D Chain D, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|E Chain E, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|F Chain F, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
Length = 209
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 61 LAGITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEID 113
+ G+ PT G P F + + Q +LR++GR YG+N EA ++D
Sbjct: 39 MQGLLKPTXLYGQLPKFEDGDLTLYQSN-AILRHLGRSLGLYGKNQREAAQMD 90
>pdb|1GLP|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|1GLP|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|1GLQ|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|1GLQ|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|2GLR|A Chain A, Molecular Structure At 1.8 Angstroms Of Mouse Liver Class
Pi Glutathione S-Transferase Complexed With S-(P-
Nitrobenzyl)glutathione And Other Inhibitors
pdb|2GLR|B Chain B, Molecular Structure At 1.8 Angstroms Of Mouse Liver Class
Pi Glutathione S-Transferase Complexed With S-(P-
Nitrobenzyl)glutathione And Other Inhibitors
pdb|1GSY|A Chain A, Glutathione S-Transferase Yfyf, Class Pi, Complexed With
Glutathione
pdb|1GSY|B Chain B, Glutathione S-Transferase Yfyf, Class Pi, Complexed With
Glutathione
pdb|1BAY|A Chain A, Glutathione S-Transferase Yfyf Cys 47-Carboxymethylated
Class Pi, Free Enzyme
pdb|1BAY|B Chain B, Glutathione S-Transferase Yfyf Cys 47-Carboxymethylated
Class Pi, Free Enzyme
Length = 209
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 61 LAGITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEID 113
+ G+ PT G P F + + Q +LR++GR YG+N EA ++D
Sbjct: 39 MQGLLKPTCLYGQLPKFEDGDLTLYQSN-AILRHLGRSLGLYGKNQREAAQMD 90
>pdb|2OAD|A Chain A, Structure Of Glutathione-S-Transferase C169a Mutant
pdb|2OAD|B Chain B, Structure Of Glutathione-S-Transferase C169a Mutant
Length = 209
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 61 LAGITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEID 113
+ G+ PT G P F + + Q +LR++GR YG+N EA ++D
Sbjct: 39 MQGLLKPTCLYGQLPKFEDGDLTLYQSN-AILRHLGRSLGLYGKNQREAAQMD 90
>pdb|2OA7|A Chain A, Mouse C14a Glutathione-s-transferase Mutant In Complex
With S-hexyl Glutathione
pdb|2OA7|B Chain B, Mouse C14a Glutathione-s-transferase Mutant In Complex
With S-hexyl Glutathione
pdb|2OAC|A Chain A, Mouse C14a Glutathione-S-Transferase Mutant In Complex
With S-(P-Nitrobenzyl) Glutathione
pdb|2OAC|B Chain B, Mouse C14a Glutathione-S-Transferase Mutant In Complex
With S-(P-Nitrobenzyl) Glutathione
Length = 209
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 61 LAGITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEID 113
+ G+ PT G P F + + Q +LR++GR YG+N EA ++D
Sbjct: 39 MQGLLKPTCLYGQLPKFEDGDLTLYQSN-AILRHLGRSLGLYGKNQREAAQMD 90
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 30/169 (17%)
Query: 237 SFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFA--QRYQGQLIVR------- 287
+FEV +++ L P PSG LH+GH + + A QR G+ +++
Sbjct: 43 TFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAF 102
Query: 288 ---------FDDTNPAKESNEFVDNLLKDIETLGIKY----ETVTYTSDYFPDLMEMAEN 334
++T PA + + + + ++ LG Y E T T +Y+ +
Sbjct: 103 GLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTE 162
Query: 335 LIRQGKAY-----VDDTPREQM---QKERMDGIESKCRNNSIEENMKLW 375
L ++G Y V+ P +Q ++ +DG +C + + W
Sbjct: 163 LYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQW 211
>pdb|3EIN|A Chain A, Delta Class Gst
pdb|3MAK|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd1 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 209
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLR-KSKKYQNLVRWFNS 186
E A +++ +LE + + G SL++ DI AL T ++ + + KY N+ RW+ +
Sbjct: 132 EAAFEFLNTFLEGQDYAAGDSLTVADI----ALVATVSTFEVAKFEISKYANVNRWYEN 186
>pdb|1VF1|A Chain A, Cgsta1-1 In Complex With Glutathione
pdb|1VF2|A Chain A, Cgsta1-1 In Complex With S-Hexyl-Glutathione
pdb|1VF2|B Chain B, Cgsta1-1 In Complex With S-Hexyl-Glutathione
pdb|1VF3|A Chain A, Cgsta1-1 In Complex With Glutathione Conjugate Of Cdnb
pdb|1VF3|B Chain B, Cgsta1-1 In Complex With Glutathione Conjugate Of Cdnb
pdb|1VF4|A Chain A, Cgsta1-1 Apo Form
Length = 229
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 23/104 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLDYT----------PVFSSGSEFEN 130
+G KL T +L YI N YG++ E ID ++ T P S+ + +
Sbjct: 61 DGMKLVQTRAILNYIAGKYNLYGKDLKERALIDMYVGGTDDLMGFLLSFPFLSAEDKVKQ 120
Query: 131 ACTYVDKYLER-------------RTFVVGHSLSIVDIAIWSAL 161
V+K R + F+VG+ LS DI + A+
Sbjct: 121 CAFVVEKATSRYFPAYEKVLKDHGQDFLVGNRLSWADIHLLEAI 164
>pdb|2P30|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Query: 229 KGKAGSRPSFEVDL----PDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
KG S P+F DL AE+ R PE +H G + AL + RY+ +
Sbjct: 39 KGALPSLPAFSSDLLRARRTAELAGFSPRLYPELR-EIHFGALEGALW-ETLDPRYK-EA 95
Query: 285 IVRFDDTNP--AKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAEN-LIRQGKA 341
++RF +P + + F + + + +E L T+ L + E+ L+ G A
Sbjct: 96 LLRFQGFHPPGGESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGEDGLVPPGSA 155
Query: 342 YVDDTPREQMQKERMDGIES 361
D PR + + MDG E+
Sbjct: 156 VAVDWPRRVLVRLAMDGEEA 175
>pdb|2EOA|A Chain A, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (W85h)
pdb|2EOA|B Chain B, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (W85h)
Length = 177
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 229 KGKAGSRPSFEVDL----PDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQL 284
KG S P+F DL AE+ R PE +H G + AL ++ RY+ +
Sbjct: 39 KGALPSLPAFSSDLLRARRTAELAGFSPRLYPELR-EIHFGALEGAL-HETLDPRYK-EA 95
Query: 285 IVRFDDTNP--AKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAEN-LIRQGKA 341
++RF +P + + F + + + +E L T+ L + E+ L+ G A
Sbjct: 96 LLRFQGFHPPGGESLSAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGEDGLVPPGSA 155
Query: 342 YVDDTPREQMQKERMDGIES 361
D PR + + +DG E+
Sbjct: 156 VAVDWPRRVLVRLALDGEEA 175
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 420 GSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVH----IYEF 475
G K+ V P C + KE +T ++ E+ N+ Y+ + V +Y
Sbjct: 291 GGKWDVKP-----CSLLTLKENLTKWQKALEHTGWNSLYWNNHDQPRVVSRFGNDGMYRI 345
Query: 476 SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTV-------------QGIVRRGLLVEA 522
M+ T+L K ++ G+ G + RF ++ + ++ RG +E
Sbjct: 346 ESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERGEDIEK 405
Query: 523 LIQFILEQGASKNLNLMEWD 542
++Q I +G M+WD
Sbjct: 406 VMQSIYIKGRDNARTPMQWD 425
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,764,270
Number of Sequences: 62578
Number of extensions: 1007434
Number of successful extensions: 2540
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2450
Number of HSP's gapped (non-prelim): 45
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)