Query 043341
Match_columns 758
No_of_seqs 432 out of 4035
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02907 glutamate-tRNA ligase 100.0 1E-168 3E-173 1458.1 73.8 714 37-758 1-722 (722)
2 KOG1147 Glutamyl-tRNA syntheta 100.0 1E-159 2E-164 1264.1 46.7 700 37-756 1-707 (712)
3 PLN03233 putative glutamate-tR 100.0 1E-143 2E-148 1192.9 50.6 511 241-758 3-515 (523)
4 PTZ00402 glutamyl-tRNA synthet 100.0 3E-141 6E-146 1182.6 52.8 517 235-757 38-557 (601)
5 PRK05347 glutaminyl-tRNA synth 100.0 3E-138 5E-143 1152.0 51.9 509 241-754 21-553 (554)
6 PTZ00437 glutaminyl-tRNA synth 100.0 3E-135 7E-140 1123.8 50.4 502 247-755 49-563 (574)
7 PRK14703 glutaminyl-tRNA synth 100.0 4E-133 9E-138 1155.5 50.9 512 241-756 23-560 (771)
8 PLN02859 glutamine-tRNA ligase 100.0 3E-132 7E-137 1132.9 55.8 506 246-756 261-787 (788)
9 TIGR00440 glnS glutaminyl-tRNA 100.0 7E-132 1E-136 1100.4 48.8 498 250-751 1-521 (522)
10 TIGR00463 gltX_arch glutamyl-t 100.0 6E-122 1E-126 1030.7 48.1 483 233-749 77-560 (560)
11 PRK04156 gltX glutamyl-tRNA sy 100.0 1E-120 2E-125 1021.9 51.3 526 174-748 34-565 (567)
12 KOG1148 Glutaminyl-tRNA synthe 100.0 1E-122 2E-127 990.4 29.9 497 246-748 245-754 (764)
13 COG0008 GlnS Glutamyl- and glu 100.0 1.4E-86 2.9E-91 734.3 0.9 445 250-733 10-472 (472)
14 cd00807 GlnRS_core catalytic c 100.0 2.5E-71 5.4E-76 560.0 22.3 238 249-558 1-238 (238)
15 PRK12410 glutamylglutaminyl-tR 100.0 1.7E-68 3.7E-73 584.6 25.1 273 251-561 1-317 (433)
16 cd09287 GluRS_non_core catalyt 100.0 2.4E-67 5.2E-72 533.3 21.8 238 249-558 1-240 (240)
17 PF00749 tRNA-synt_1c: tRNA sy 100.0 2.5E-69 5.4E-74 578.1 7.3 297 249-546 1-314 (314)
18 PLN02627 glutamyl-tRNA synthet 100.0 7.7E-67 1.7E-71 579.7 26.6 288 245-561 41-377 (535)
19 PRK12558 glutamyl-tRNA synthet 100.0 8E-66 1.7E-70 566.3 25.1 275 249-561 2-323 (445)
20 KOG1149 Glutamyl-tRNA syntheta 100.0 3.3E-65 7.1E-70 533.0 20.4 276 249-553 33-357 (524)
21 PRK14895 gltX glutamyl-tRNA sy 100.0 5.2E-64 1.1E-68 556.7 24.9 283 248-561 3-323 (513)
22 PRK01406 gltX glutamyl-tRNA sy 100.0 6.7E-64 1.5E-68 562.0 25.9 279 247-560 2-333 (476)
23 TIGR00464 gltX_bact glutamyl-t 100.0 1.1E-63 2.4E-68 560.2 25.7 287 249-561 1-325 (470)
24 TIGR03838 queuosine_YadB gluta 100.0 4.5E-64 9.7E-69 521.5 19.4 241 250-521 1-260 (272)
25 PRK05710 glutamyl-Q tRNA(Asp) 100.0 7.9E-63 1.7E-67 517.3 23.5 242 247-534 3-266 (299)
26 cd00418 GlxRS_core catalytic c 100.0 1.1E-58 2.4E-63 468.5 19.8 205 249-554 1-230 (230)
27 cd00808 GluRS_core catalytic c 100.0 4.3E-54 9.2E-59 438.8 18.5 205 249-553 1-238 (239)
28 PF03950 tRNA-synt_1c_C: tRNA 100.0 4.5E-44 9.7E-49 351.0 14.8 170 556-733 1-174 (174)
29 COG0215 CysS Cysteinyl-tRNA sy 100.0 2.3E-32 5E-37 296.9 14.8 261 255-549 29-316 (464)
30 PF01406 tRNA-synt_1e: tRNA sy 100.0 9.2E-31 2E-35 271.9 11.3 259 255-548 15-299 (300)
31 PLN02946 cysteine-tRNA ligase 100.0 5.4E-28 1.2E-32 272.7 15.5 254 255-549 87-371 (557)
32 TIGR00435 cysS cysteinyl-tRNA 100.0 2.5E-27 5.5E-32 267.1 20.1 267 252-554 25-317 (465)
33 PRK14534 cysS cysteinyl-tRNA s 99.9 1.6E-27 3.5E-32 265.1 15.6 255 254-549 27-328 (481)
34 PRK14536 cysS cysteinyl-tRNA s 99.9 4.4E-27 9.5E-32 263.0 18.8 260 255-549 30-328 (490)
35 PRK12418 cysteinyl-tRNA synthe 99.9 1.9E-27 4.2E-32 258.7 15.3 265 254-550 15-311 (384)
36 PRK00260 cysS cysteinyl-tRNA s 99.9 1.1E-26 2.4E-31 262.5 19.7 266 249-550 23-315 (463)
37 TIGR03447 mycothiol_MshC cyste 99.9 2.5E-27 5.5E-32 258.7 12.5 265 254-549 42-337 (411)
38 PRK14535 cysS cysteinyl-tRNA s 99.9 1.5E-26 3.2E-31 261.9 18.4 255 254-549 254-556 (699)
39 KOG2007 Cysteinyl-tRNA synthet 99.9 2.9E-24 6.2E-29 230.0 15.6 248 254-542 61-346 (586)
40 PTZ00399 cysteinyl-tRNA-synthe 99.9 8.9E-24 1.9E-28 245.7 18.3 266 255-551 67-365 (651)
41 PLN02473 glutathione S-transfe 99.9 2.2E-22 4.7E-27 205.7 17.4 160 37-201 1-211 (214)
42 PLN02395 glutathione S-transfe 99.9 7.1E-22 1.5E-26 202.0 17.6 162 37-204 1-213 (215)
43 PRK09481 sspA stringent starva 99.9 5.1E-22 1.1E-26 202.7 16.1 156 39-201 11-202 (211)
44 PRK13972 GSH-dependent disulfi 99.9 1E-21 2.2E-26 201.1 18.2 155 39-201 2-205 (215)
45 cd00671 ArgRS_core catalytic c 99.9 4.6E-22 9.9E-27 202.9 13.3 179 254-489 7-211 (212)
46 PRK10542 glutathionine S-trans 99.9 3.1E-21 6.8E-26 195.1 15.6 155 39-201 1-197 (201)
47 PRK11752 putative S-transferas 99.9 9.4E-21 2E-25 199.8 18.7 158 39-201 45-258 (264)
48 PRK10357 putative glutathione 99.8 1E-20 2.2E-25 191.7 15.3 155 39-198 1-197 (202)
49 PRK01611 argS arginyl-tRNA syn 99.8 4.9E-21 1.1E-25 219.6 13.8 233 247-550 110-388 (507)
50 PRK15113 glutathione S-transfe 99.8 3.9E-20 8.5E-25 189.2 17.1 153 39-202 6-209 (214)
51 TIGR01262 maiA maleylacetoacet 99.8 7.3E-20 1.6E-24 186.4 15.8 154 41-202 2-205 (210)
52 KOG0406 Glutathione S-transfer 99.8 8.1E-20 1.7E-24 183.3 14.4 158 39-201 10-211 (231)
53 COG0625 Gst Glutathione S-tran 99.8 1.6E-19 3.4E-24 184.3 16.8 151 39-196 1-199 (211)
54 KOG0867 Glutathione S-transfer 99.8 1.9E-19 4.1E-24 185.3 16.0 161 37-202 1-210 (226)
55 KOG0868 Glutathione S-transfer 99.8 9.8E-20 2.1E-24 170.9 12.1 155 39-201 6-207 (217)
56 PRK10387 glutaredoxin 2; Provi 99.8 8.7E-19 1.9E-23 178.5 13.5 146 39-195 1-207 (210)
57 PTZ00057 glutathione s-transfe 99.8 1.7E-18 3.7E-23 175.9 15.6 154 39-201 5-199 (205)
58 PLN02378 glutathione S-transfe 99.7 1E-17 2.3E-22 171.2 12.6 152 46-200 17-198 (213)
59 PLN02817 glutathione dehydroge 99.7 2.6E-17 5.7E-22 173.0 14.8 150 48-200 72-250 (265)
60 PRK12451 arginyl-tRNA syntheta 99.7 1.7E-17 3.7E-22 191.9 12.9 203 300-564 236-462 (562)
61 TIGR00862 O-ClC intracellular 99.7 8.1E-17 1.8E-21 165.7 14.1 151 46-199 16-218 (236)
62 COG0018 ArgS Arginyl-tRNA synt 99.7 4.2E-17 9.2E-22 186.3 12.7 183 300-549 241-453 (577)
63 PRK11893 methionyl-tRNA synthe 99.7 4.4E-16 9.5E-21 180.0 19.3 276 250-547 4-346 (511)
64 KOG1695 Glutathione S-transfer 99.7 3.8E-16 8.3E-21 156.0 15.1 159 37-201 2-200 (206)
65 TIGR00456 argS arginyl-tRNA sy 99.7 1.1E-16 2.4E-21 185.8 12.8 253 250-563 115-460 (566)
66 TIGR02182 GRXB Glutaredoxin, G 99.7 3.7E-16 8E-21 159.3 13.6 144 40-195 1-206 (209)
67 PLN02224 methionine-tRNA ligas 99.7 1.1E-15 2.3E-20 177.1 15.8 288 249-553 71-420 (616)
68 PLN02286 arginine-tRNA ligase 99.7 6.9E-16 1.5E-20 178.7 14.0 198 301-563 242-472 (576)
69 TIGR00398 metG methionyl-tRNA 99.6 2.2E-15 4.8E-20 174.7 17.0 293 250-560 2-391 (530)
70 cd00814 MetRS_core catalytic c 99.6 5.6E-15 1.2E-19 160.2 18.1 252 250-539 3-319 (319)
71 cd00668 Ile_Leu_Val_MetRS_core 99.6 4.5E-15 9.7E-20 160.6 16.7 252 250-538 3-311 (312)
72 COG0143 MetG Methionyl-tRNA sy 99.6 1.3E-14 2.9E-19 164.6 17.8 291 249-561 7-398 (558)
73 PRK12267 methionyl-tRNA synthe 99.6 7.5E-15 1.6E-19 173.7 16.1 282 249-547 6-346 (648)
74 PRK00133 metG methionyl-tRNA s 99.6 4.8E-14 1E-18 167.2 16.8 279 250-546 5-376 (673)
75 PLN02610 probable methionyl-tR 99.6 5.4E-14 1.2E-18 167.7 17.1 284 248-549 18-398 (801)
76 PF00750 tRNA-synt_1d: tRNA sy 99.5 1.8E-14 4E-19 157.9 10.1 185 249-490 21-294 (354)
77 cd00672 CysRS_core catalytic c 99.5 1.3E-13 2.8E-18 140.1 14.0 166 251-540 23-213 (213)
78 KOG4420 Uncharacterized conser 99.5 1.1E-13 2.3E-18 137.7 11.7 160 39-203 27-289 (325)
79 PRK12268 methionyl-tRNA synthe 99.5 5.9E-13 1.3E-17 155.4 18.5 282 250-551 6-386 (556)
80 cd00802 class_I_aaRS_core cata 99.5 4.7E-14 1E-18 135.0 6.7 133 251-489 1-143 (143)
81 PF09334 tRNA-synt_1g: tRNA sy 99.5 1.1E-13 2.3E-18 153.5 9.9 280 250-553 2-380 (391)
82 cd00818 IleRS_core catalytic c 99.4 1.9E-12 4.2E-17 141.3 15.4 91 254-344 8-137 (338)
83 cd00812 LeuRS_core catalytic c 99.4 2.5E-12 5.5E-17 139.1 13.5 93 250-342 3-117 (314)
84 cd00817 ValRS_core catalytic c 99.3 3.2E-12 6.8E-17 142.0 10.3 93 250-342 4-134 (382)
85 KOG0436 Methionyl-tRNA synthet 99.3 2.6E-12 5.6E-17 135.8 8.5 286 250-554 42-398 (578)
86 cd00674 LysRS_core_class_I cat 99.3 6.1E-11 1.3E-15 128.7 19.4 235 249-542 20-317 (353)
87 PRK00750 lysK lysyl-tRNA synth 99.3 4.4E-11 9.6E-16 136.8 15.7 240 250-550 25-328 (510)
88 cd03200 GST_C_JTV1 GST_C famil 99.2 5.5E-11 1.2E-15 105.6 8.2 93 92-190 1-96 (96)
89 cd03196 GST_C_5 GST_C family, 99.2 9E-11 1.9E-15 108.0 8.6 93 104-198 2-114 (115)
90 KOG3029 Glutathione S-transfer 99.1 1.5E-09 3.2E-14 109.6 13.1 148 39-190 91-355 (370)
91 PRK13208 valS valyl-tRNA synth 99.0 1.9E-09 4.1E-14 130.9 15.8 93 250-342 41-168 (800)
92 TIGR00422 valS valyl-tRNA synt 99.0 1E-08 2.2E-13 125.4 21.0 93 250-342 36-166 (861)
93 COG0435 ECM4 Predicted glutath 99.0 1.7E-09 3.8E-14 109.3 11.4 155 39-199 52-284 (324)
94 cd03188 GST_C_Beta GST_C famil 99.0 6.2E-10 1.3E-14 101.5 7.4 68 126-198 46-113 (114)
95 COG2999 GrxB Glutaredoxin 2 [P 99.0 1.6E-09 3.5E-14 102.6 9.7 143 39-190 1-204 (215)
96 cd03186 GST_C_SspA GST_N famil 99.0 7.9E-10 1.7E-14 100.0 7.0 88 107-198 2-106 (107)
97 TIGR00467 lysS_arch lysyl-tRNA 99.0 8.6E-09 1.9E-13 117.4 16.4 235 249-544 19-317 (515)
98 KOG1422 Intracellular Cl- chan 99.0 4.3E-09 9.2E-14 102.9 11.7 149 46-197 18-201 (221)
99 KOG4244 Failed axon connection 99.0 4.5E-09 9.8E-14 106.2 12.0 147 46-193 58-276 (281)
100 cd03187 GST_C_Phi GST_C family 99.0 1.4E-09 2.9E-14 99.9 7.5 70 126-198 48-117 (118)
101 PRK05729 valS valyl-tRNA synth 98.9 3.6E-08 7.8E-13 120.7 21.3 93 250-342 39-169 (874)
102 cd03178 GST_C_Ure2p_like GST_C 98.9 1.1E-09 2.5E-14 99.7 6.1 70 126-199 43-112 (113)
103 cd03190 GST_C_ECM4_like GST_C 98.9 1.7E-09 3.7E-14 103.4 7.4 93 107-201 3-118 (142)
104 cd03181 GST_C_EFB1gamma GST_C 98.9 1.9E-09 4.2E-14 99.8 6.6 75 126-202 43-117 (123)
105 cd03189 GST_C_GTT1_like GST_C 98.9 4.1E-09 8.9E-14 97.1 8.2 85 103-190 2-118 (119)
106 cd03041 GST_N_2GST_N GST_N fam 98.9 4.5E-09 9.8E-14 89.3 7.8 59 39-99 2-77 (77)
107 cd03185 GST_C_Tau GST_C family 98.9 2E-09 4.4E-14 100.1 6.1 93 107-201 2-115 (126)
108 cd03177 GST_C_Delta_Epsilon GS 98.9 4.2E-09 9.1E-14 97.1 8.1 70 126-199 41-110 (118)
109 cd03191 GST_C_Zeta GST_C famil 98.9 3.6E-09 7.9E-14 97.8 7.4 69 127-200 48-118 (121)
110 cd03183 GST_C_Theta GST_C fami 98.9 4.5E-09 9.7E-14 98.0 7.4 73 126-202 48-123 (126)
111 cd03203 GST_C_Lambda GST_C fam 98.9 4.4E-09 9.6E-14 97.4 7.3 93 105-200 1-110 (120)
112 cd03182 GST_C_GTT2_like GST_C 98.9 4.8E-09 1E-13 96.2 7.4 87 105-195 1-117 (117)
113 cd03037 GST_N_GRX2 GST_N famil 98.8 6E-09 1.3E-13 87.0 6.3 57 39-97 1-71 (71)
114 PF14497 GST_C_3: Glutathione 98.8 5.1E-09 1.1E-13 93.4 5.3 81 105-189 2-99 (99)
115 cd03207 GST_C_8 GST_C family, 98.8 5.9E-09 1.3E-13 93.5 5.6 69 126-200 33-101 (103)
116 cd03077 GST_N_Alpha GST_N fami 98.8 1.5E-08 3.3E-13 86.6 7.7 59 40-101 3-78 (79)
117 cd03180 GST_C_2 GST_C family, 98.8 1.1E-08 2.5E-13 92.5 7.2 65 126-195 46-110 (110)
118 cd03059 GST_N_SspA GST_N famil 98.8 1.7E-08 3.8E-13 84.4 7.3 58 39-99 1-73 (73)
119 cd03050 GST_N_Theta GST_N fami 98.8 1.8E-08 3.9E-13 85.2 7.3 58 39-99 1-76 (76)
120 cd03048 GST_N_Ure2p_like GST_N 98.8 2.1E-08 4.5E-13 86.0 7.7 58 39-99 2-79 (81)
121 cd03058 GST_N_Tau GST_N family 98.8 1.9E-08 4E-13 84.7 7.3 58 39-99 1-74 (74)
122 cd03045 GST_N_Delta_Epsilon GS 98.8 1.6E-08 3.5E-13 84.9 6.9 56 39-97 1-74 (74)
123 cd03076 GST_N_Pi GST_N family, 98.8 1.6E-08 3.4E-13 85.0 6.8 56 39-97 2-72 (73)
124 PF13417 GST_N_3: Glutathione 98.8 1.1E-08 2.4E-13 86.4 5.7 56 41-99 1-71 (75)
125 cd03052 GST_N_GDAP1 GST_N fami 98.8 1.7E-08 3.7E-13 84.9 6.5 54 40-96 2-73 (73)
126 KOG2903 Predicted glutathione 98.7 4.8E-08 1E-12 98.0 10.4 155 39-198 38-285 (319)
127 cd03051 GST_N_GTT2_like GST_N 98.7 2E-08 4.4E-13 84.0 6.6 56 39-96 1-74 (74)
128 cd03080 GST_N_Metaxin_like GST 98.7 2.8E-08 6E-13 84.0 7.2 58 39-99 2-74 (75)
129 cd03044 GST_N_EF1Bgamma GST_N 98.7 2.9E-08 6.2E-13 83.9 7.1 56 40-97 2-74 (75)
130 cd03057 GST_N_Beta GST_N famil 98.7 3.2E-08 7E-13 83.9 7.3 58 39-99 1-76 (77)
131 cd03053 GST_N_Phi GST_N family 98.7 3.4E-08 7.3E-13 83.5 7.3 57 39-98 2-76 (76)
132 cd03039 GST_N_Sigma_like GST_N 98.7 2.8E-08 6.1E-13 83.1 6.3 56 39-97 1-72 (72)
133 cd03184 GST_C_Omega GST_C fami 98.7 2.8E-08 6.2E-13 92.5 6.9 92 108-201 2-113 (124)
134 PF00043 GST_C: Glutathione S- 98.7 2.8E-08 6E-13 87.6 6.4 64 126-190 31-94 (95)
135 cd03060 GST_N_Omega_like GST_N 98.7 4.1E-08 8.8E-13 82.0 7.0 54 40-95 2-70 (71)
136 PF02798 GST_N: Glutathione S- 98.7 5E-08 1.1E-12 82.7 7.5 51 47-97 7-76 (76)
137 cd03198 GST_C_CLIC GST_C famil 98.7 3.5E-08 7.6E-13 92.6 7.0 72 126-199 32-122 (134)
138 cd03179 GST_C_1 GST_C family, 98.7 3.5E-08 7.6E-13 88.5 6.8 77 108-187 2-104 (105)
139 cd03206 GST_C_7 GST_C family, 98.7 2.4E-08 5.2E-13 89.2 5.5 65 126-195 36-100 (100)
140 cd03049 GST_N_3 GST_N family, 98.7 4.6E-08 1E-12 82.0 6.6 56 39-96 1-73 (73)
141 cd03047 GST_N_2 GST_N family, 98.7 4.6E-08 1E-12 82.1 6.6 55 39-96 1-73 (73)
142 cd03040 GST_N_mPGES2 GST_N fam 98.7 7.5E-08 1.6E-12 81.6 7.5 58 39-98 2-75 (77)
143 cd03042 GST_N_Zeta GST_N famil 98.6 5.5E-08 1.2E-12 81.3 6.5 55 39-96 1-73 (73)
144 cd03209 GST_C_Mu GST_C family, 98.6 6.9E-08 1.5E-12 89.5 7.3 72 126-201 38-109 (121)
145 cd03056 GST_N_4 GST_N family, 98.6 7.9E-08 1.7E-12 80.3 6.6 55 39-96 1-73 (73)
146 PF13410 GST_C_2: Glutathione 98.6 6.6E-08 1.4E-12 80.1 6.0 61 126-186 9-69 (69)
147 cd03055 GST_N_Omega GST_N fami 98.6 1E-07 2.2E-12 83.4 7.1 56 39-96 19-89 (89)
148 cd03046 GST_N_GTT1_like GST_N 98.6 1.2E-07 2.6E-12 80.0 7.3 57 39-99 1-75 (76)
149 cd03075 GST_N_Mu GST_N family, 98.6 1E-07 2.2E-12 82.0 6.8 57 40-99 2-82 (82)
150 KOG3027 Mitochondrial outer me 98.6 3.2E-07 7E-12 89.1 10.7 144 46-190 31-248 (257)
151 cd03195 GST_C_4 GST_C family, 98.6 1.4E-07 2.9E-12 86.7 7.3 86 107-200 2-112 (114)
152 cd03204 GST_C_GDAP1 GST_C fami 98.6 1.2E-07 2.6E-12 86.3 6.4 68 126-195 32-111 (111)
153 cd03208 GST_C_Alpha GST_C fami 98.5 1.4E-07 3E-12 89.6 6.9 73 126-202 42-116 (137)
154 cd03210 GST_C_Pi GST_C family, 98.5 1.5E-07 3.3E-12 87.9 6.9 72 126-201 38-112 (126)
155 PF13409 GST_N_2: Glutathione 98.5 1.2E-07 2.5E-12 79.1 5.3 50 49-98 2-70 (70)
156 cd03201 GST_C_DHAR GST_C famil 98.5 1.7E-07 3.7E-12 87.0 6.0 73 126-200 33-109 (121)
157 cd03061 GST_N_CLIC GST_N famil 98.5 2.8E-07 6E-12 80.5 6.5 52 47-99 20-86 (91)
158 PF01921 tRNA-synt_1f: tRNA sy 98.5 2.5E-07 5.4E-12 99.7 7.4 246 249-542 24-323 (360)
159 cd00806 TrpRS_core catalytic c 98.4 8.4E-07 1.8E-11 94.4 10.1 171 257-490 7-197 (280)
160 cd03054 GST_N_Metaxin GST_N fa 98.4 6.1E-07 1.3E-11 75.0 6.5 51 47-98 14-72 (72)
161 cd03079 GST_N_Metaxin2 GST_N f 98.4 8.2E-07 1.8E-11 74.5 6.6 52 46-98 14-74 (74)
162 cd03038 GST_N_etherase_LigE GS 98.4 9E-07 1.9E-11 76.4 6.5 53 47-99 14-83 (84)
163 cd00299 GST_C_family Glutathio 98.3 7.2E-07 1.6E-11 78.6 5.5 62 126-187 39-100 (100)
164 cd03202 GST_C_etherase_LigE GS 98.3 1.1E-06 2.3E-11 82.0 6.4 63 126-189 61-123 (124)
165 cd03043 GST_N_1 GST_N family, 98.3 1.1E-06 2.4E-11 73.8 5.7 51 45-96 6-73 (73)
166 cd03193 GST_C_Metaxin GST_C fa 98.3 1.3E-06 2.9E-11 75.9 6.0 62 126-187 22-87 (88)
167 cd00570 GST_N_family Glutathio 98.3 2E-06 4.3E-11 70.1 6.5 55 39-96 1-71 (71)
168 cd03194 GST_C_3 GST_C family, 98.2 3.2E-06 7E-11 77.6 7.0 67 126-200 44-113 (114)
169 PRK00390 leuS leucyl-tRNA synt 98.2 3.4E-06 7.3E-11 102.4 8.4 94 249-342 34-149 (805)
170 TIGR00396 leuS_bact leucyl-tRN 98.2 5.4E-06 1.2E-10 100.8 10.1 93 250-342 32-146 (842)
171 COG1384 LysS Lysyl-tRNA synthe 98.2 1.7E-06 3.8E-11 95.8 5.2 94 442-552 230-329 (521)
172 cd03192 GST_C_Sigma_like GST_C 98.1 2.6E-06 5.7E-11 76.3 4.8 60 126-187 42-104 (104)
173 KOG3028 Translocase of outer m 98.1 4.2E-05 9.1E-10 79.8 12.9 142 49-190 17-234 (313)
174 PLN02563 aminoacyl-tRNA ligase 98.0 1.4E-05 3E-10 97.9 8.7 93 250-342 113-228 (963)
175 PRK05743 ileS isoleucyl-tRNA s 98.0 1.2E-05 2.6E-10 98.9 7.5 93 250-342 52-179 (912)
176 COG0495 LeuS Leucyl-tRNA synth 97.9 1.2E-05 2.5E-10 95.5 6.7 94 249-342 36-151 (814)
177 TIGR00392 ileS isoleucyl-tRNA 97.9 1.5E-05 3.1E-10 98.1 7.5 93 250-342 39-170 (861)
178 cd03205 GST_C_6 GST_C family, 97.9 1.9E-05 4E-10 70.2 5.4 59 126-187 40-98 (98)
179 PTZ00427 isoleucine-tRNA ligas 97.9 2.4E-05 5.2E-10 97.7 8.2 91 252-342 107-236 (1205)
180 PTZ00419 valyl-tRNA synthetase 97.9 2.4E-05 5.1E-10 97.4 7.8 93 250-342 63-194 (995)
181 PLN02843 isoleucyl-tRNA synthe 97.9 2.4E-05 5.2E-10 96.6 7.7 93 250-342 35-163 (974)
182 PF00133 tRNA-synt_1: tRNA syn 97.9 3E-05 6.4E-10 91.5 8.1 93 250-342 26-157 (601)
183 PRK14900 valS valyl-tRNA synth 97.8 2.9E-05 6.2E-10 96.6 6.9 93 250-342 51-182 (1052)
184 PLN02943 aminoacyl-tRNA ligase 97.8 4.4E-05 9.5E-10 94.3 8.2 93 250-342 91-221 (958)
185 PLN02381 valyl-tRNA synthetase 97.8 3.8E-05 8.3E-10 95.4 7.3 93 250-342 131-262 (1066)
186 cd03211 GST_C_Metaxin2 GST_C f 97.8 3.5E-05 7.6E-10 72.0 5.2 62 126-187 60-125 (126)
187 cd03197 GST_C_mPGES2 GST_C fam 97.7 5.7E-05 1.2E-09 71.8 6.3 64 126-190 82-146 (149)
188 PLN02882 aminoacyl-tRNA ligase 97.7 4.6E-05 1E-09 95.4 7.3 92 251-342 42-172 (1159)
189 PRK06039 ileS isoleucyl-tRNA s 97.7 5.1E-05 1.1E-09 94.2 7.4 93 250-342 44-175 (975)
190 TIGR00395 leuS_arch leucyl-tRN 97.6 4.9E-05 1.1E-09 93.9 5.8 87 447-550 579-670 (938)
191 cd03212 GST_C_Metaxin1_3 GST_C 97.6 9.6E-05 2.1E-09 70.1 6.3 65 126-190 67-135 (137)
192 COG0525 ValS Valyl-tRNA synthe 97.6 0.00012 2.6E-09 87.0 8.0 89 254-342 40-166 (877)
193 PRK13804 ileS isoleucyl-tRNA s 97.6 0.00011 2.4E-09 90.8 7.6 93 250-342 57-187 (961)
194 PRK12285 tryptophanyl-tRNA syn 97.5 0.00036 7.8E-09 76.9 8.8 82 250-335 69-159 (368)
195 cd03078 GST_N_Metaxin1_like GS 97.5 0.00033 7.2E-09 58.8 6.6 51 47-98 14-72 (73)
196 TIGR00233 trpS tryptophanyl-tR 97.5 0.00046 1E-08 75.1 9.5 69 257-326 10-88 (328)
197 COG0180 TrpS Tryptophanyl-tRNA 97.3 0.0011 2.4E-08 70.7 10.0 172 257-491 13-205 (314)
198 PRK12556 tryptophanyl-tRNA syn 97.3 0.0022 4.8E-08 69.8 11.8 69 257-326 11-89 (332)
199 KOG0435 Leucyl-tRNA synthetase 97.2 0.00031 6.8E-09 79.6 5.1 94 249-342 59-174 (876)
200 PLN02959 aminoacyl-tRNA ligase 96.8 0.0018 3.9E-08 81.1 7.2 57 472-544 706-762 (1084)
201 PF14834 GST_C_4: Glutathione 96.8 0.0061 1.3E-07 54.9 8.5 88 105-200 1-113 (117)
202 PRK08560 tyrosyl-tRNA syntheta 96.8 0.0043 9.4E-08 67.7 8.8 171 256-489 37-219 (329)
203 TIGR02190 GlrX-dom Glutaredoxi 96.8 0.0039 8.4E-08 53.1 6.7 57 37-96 8-79 (79)
204 cd00395 Tyr_Trp_RS_core cataly 96.8 0.0039 8.4E-08 66.2 7.9 51 440-490 152-204 (273)
205 KOG0432 Valyl-tRNA synthetase 96.7 0.0029 6.3E-08 74.1 7.1 93 250-342 78-209 (995)
206 TIGR00395 leuS_arch leucyl-tRN 96.7 0.004 8.8E-08 77.2 8.8 12 434-445 573-584 (938)
207 cd00805 TyrRS_core catalytic c 96.6 0.0075 1.6E-07 64.0 8.8 52 440-491 150-202 (269)
208 PLN02486 aminoacyl-tRNA ligase 96.4 0.015 3.2E-07 64.5 9.4 69 257-325 81-159 (383)
209 PF00579 tRNA-synt_1b: tRNA sy 96.3 0.0042 9.1E-08 66.7 4.7 174 257-491 13-205 (292)
210 PRK12300 leuS leucyl-tRNA synt 96.0 0.019 4E-07 71.1 9.2 88 446-550 535-627 (897)
211 cd03029 GRX_hybridPRX5 Glutare 96.0 0.022 4.8E-07 47.3 6.6 55 39-96 3-72 (72)
212 PRK10638 glutaredoxin 3; Provi 95.9 0.032 7E-07 47.8 7.2 55 39-96 4-74 (83)
213 PRK13354 tyrosyl-tRNA syntheta 95.8 0.032 6.9E-07 62.7 8.9 50 441-490 186-236 (410)
214 PTZ00126 tyrosyl-tRNA syntheta 95.7 0.089 1.9E-06 58.5 11.6 52 439-490 208-263 (383)
215 TIGR00392 ileS isoleucyl-tRNA 95.3 0.038 8.2E-07 68.4 7.9 96 442-554 565-664 (861)
216 PRK05912 tyrosyl-tRNA syntheta 95.2 0.058 1.3E-06 60.6 8.4 69 257-327 41-130 (408)
217 PF10568 Tom37: Outer mitochon 95.1 0.057 1.2E-06 45.1 5.8 48 48-95 13-71 (72)
218 COG0060 IleS Isoleucyl-tRNA sy 95.0 0.032 7E-07 67.7 5.8 88 255-342 57-182 (933)
219 PLN02886 aminoacyl-tRNA ligase 94.9 0.084 1.8E-06 58.4 8.2 74 250-326 49-130 (389)
220 PRK12300 leuS leucyl-tRNA synt 94.7 0.036 7.8E-07 68.6 5.5 81 262-342 1-127 (897)
221 PRK06039 ileS isoleucyl-tRNA s 94.7 0.074 1.6E-06 66.5 8.1 68 471-554 578-646 (975)
222 PTZ00348 tyrosyl-tRNA syntheta 94.6 0.16 3.4E-06 60.3 10.1 70 256-325 39-119 (682)
223 TIGR02196 GlrX_YruB Glutaredox 94.4 0.15 3.3E-06 41.6 7.0 54 39-95 2-73 (74)
224 PF09635 MetRS-N: MetRS-N bind 94.2 0.26 5.6E-06 45.1 8.2 99 54-161 14-121 (122)
225 PRK14900 valS valyl-tRNA synth 93.9 0.1 2.2E-06 65.5 7.1 67 471-554 524-591 (1052)
226 PF04399 Glutaredoxin2_C: Glut 93.9 0.16 3.5E-06 47.6 6.6 60 126-190 62-121 (132)
227 PLN02959 aminoacyl-tRNA ligase 93.8 0.11 2.5E-06 65.3 7.1 9 500-508 750-758 (1084)
228 PRK12282 tryptophanyl-tRNA syn 93.8 0.12 2.6E-06 56.5 6.3 69 257-326 10-87 (333)
229 PLN02843 isoleucyl-tRNA synthe 93.7 0.15 3.2E-06 63.7 7.8 85 446-546 569-665 (974)
230 PLN02943 aminoacyl-tRNA ligase 93.6 0.084 1.8E-06 65.7 5.4 69 471-557 569-638 (958)
231 PRK12283 tryptophanyl-tRNA syn 93.5 0.13 2.9E-06 56.9 6.2 68 257-325 10-86 (398)
232 PRK10329 glutaredoxin-like pro 93.5 0.21 4.5E-06 42.8 6.1 46 37-85 1-61 (81)
233 cd03027 GRX_DEP Glutaredoxin ( 93.5 0.3 6.5E-06 40.6 7.0 51 39-92 3-69 (73)
234 PRK11200 grxA glutaredoxin 1; 93.4 0.42 9E-06 41.0 7.9 60 37-99 1-83 (85)
235 PRK05743 ileS isoleucyl-tRNA s 93.2 0.24 5.2E-06 61.6 8.6 88 442-546 546-637 (912)
236 PRK12284 tryptophanyl-tRNA syn 93.2 0.21 4.6E-06 55.8 7.2 69 257-326 10-88 (431)
237 cd03418 GRX_GRXb_1_3_like Glut 93.0 0.4 8.6E-06 39.8 7.0 54 39-95 2-72 (75)
238 cd02066 GRX_family Glutaredoxi 92.9 0.4 8.7E-06 38.7 6.9 53 39-94 2-70 (72)
239 TIGR02200 GlrX_actino Glutared 92.7 0.23 5.1E-06 41.2 5.3 49 39-89 2-67 (77)
240 PF00133 tRNA-synt_1: tRNA syn 92.2 0.28 6E-06 58.2 7.0 83 442-540 515-601 (601)
241 KOG1195 Arginyl-tRNA synthetas 92.2 0.91 2E-05 51.0 10.3 30 249-278 111-141 (567)
242 PRK00927 tryptophanyl-tRNA syn 92.0 0.3 6.4E-06 53.5 6.4 69 257-326 9-85 (333)
243 PRK13804 ileS isoleucyl-tRNA s 91.7 0.35 7.6E-06 60.4 7.3 83 446-546 588-675 (961)
244 cd02976 NrdH NrdH-redoxin (Nrd 91.6 0.49 1.1E-05 38.4 5.9 46 39-87 2-63 (73)
245 cd03199 GST_C_GRX2 GST_C famil 91.4 0.47 1E-05 44.2 6.1 60 126-190 63-122 (128)
246 PRK00390 leuS leucyl-tRNA synt 91.3 0.33 7.1E-06 59.5 6.4 87 440-548 522-618 (805)
247 TIGR02194 GlrX_NrdH Glutaredox 91.2 0.5 1.1E-05 39.1 5.6 45 39-85 1-60 (72)
248 KOG4426 Arginyl-tRNA synthetas 91.1 4 8.8E-05 45.0 13.4 47 242-288 182-231 (656)
249 COG0495 LeuS Leucyl-tRNA synth 90.7 0.13 2.8E-06 62.0 2.0 95 439-549 524-628 (814)
250 PLN02882 aminoacyl-tRNA ligase 90.5 0.63 1.4E-05 59.1 8.0 70 466-551 594-666 (1159)
251 PTZ00427 isoleucine-tRNA ligas 89.9 0.73 1.6E-05 58.5 7.8 95 443-553 675-774 (1205)
252 COG0162 TyrS Tyrosyl-tRNA synt 89.9 1.2 2.6E-05 49.7 8.6 87 255-342 38-140 (401)
253 TIGR02181 GRX_bact Glutaredoxi 89.8 1.1 2.4E-05 37.7 6.6 55 40-97 2-72 (79)
254 COG0525 ValS Valyl-tRNA synthe 88.9 1 2.2E-05 54.5 7.7 87 443-545 480-570 (877)
255 TIGR00396 leuS_bact leucyl-tRN 88.0 0.71 1.5E-05 56.9 5.8 49 484-548 604-652 (842)
256 KOG1668 Elongation factor 1 be 87.9 0.92 2E-05 46.1 5.4 55 129-190 10-64 (231)
257 COG0695 GrxC Glutaredoxin and 87.7 1.9 4.2E-05 36.7 6.6 54 38-94 2-73 (80)
258 KOG0433 Isoleucyl-tRNA synthet 86.6 1.6 3.4E-05 51.3 6.9 86 258-343 66-187 (937)
259 KOG1247 Methionyl-tRNA synthet 85.7 0.62 1.3E-05 50.9 3.0 101 239-340 7-128 (567)
260 TIGR02183 GRXA Glutaredoxin, G 85.3 4.1 8.8E-05 35.1 7.5 58 39-99 2-82 (86)
261 PF00462 Glutaredoxin: Glutare 84.9 1.8 4E-05 34.2 4.8 43 40-85 2-60 (60)
262 cd02156 nt_trans nucleotidyl t 83.6 1.9 4E-05 38.7 4.8 39 252-295 2-40 (105)
263 PTZ00419 valyl-tRNA synthetase 79.4 3 6.4E-05 52.6 6.1 35 518-553 640-674 (995)
264 TIGR02189 GlrX-like_plant Glut 79.2 7.3 0.00016 34.6 6.9 54 38-94 9-81 (99)
265 cd03419 GRX_GRXh_1_2_like Glut 78.8 7.6 0.00016 32.5 6.7 56 39-97 2-76 (82)
266 PLN02381 valyl-tRNA synthetase 76.1 6.5 0.00014 49.8 7.7 28 518-545 710-737 (1066)
267 PLN02563 aminoacyl-tRNA ligase 73.5 3.7 8E-05 51.3 4.6 55 482-553 721-775 (963)
268 TIGR02180 GRX_euk Glutaredoxin 73.2 13 0.00028 31.1 6.7 55 40-97 2-77 (84)
269 PHA03050 glutaredoxin; Provisi 72.8 13 0.00028 33.6 6.8 52 39-93 15-88 (108)
270 TIGR00234 tyrS tyrosyl-tRNA sy 69.0 9.2 0.0002 42.7 6.0 49 442-490 178-227 (377)
271 cd03028 GRX_PICOT_like Glutare 68.0 18 0.00039 31.3 6.5 48 47-95 21-84 (90)
272 TIGR00365 monothiol glutaredox 67.3 19 0.00042 31.7 6.6 48 47-95 25-88 (97)
273 KOG0437 Leucyl-tRNA synthetase 64.3 9.6 0.00021 45.0 5.0 65 249-316 45-116 (1080)
274 KOG2713 Mitochondrial tryptoph 60.7 14 0.00031 38.8 5.0 69 256-325 20-100 (347)
275 KOG0437 Leucyl-tRNA synthetase 56.6 2.8 6E-05 49.2 -0.9 51 475-541 701-751 (1080)
276 PRK10026 arsenate reductase; P 53.1 15 0.00033 34.9 3.6 31 39-71 4-34 (141)
277 PF11287 DUF3088: Protein of u 50.8 27 0.00058 31.7 4.5 28 72-99 67-107 (112)
278 COG0060 IleS Isoleucyl-tRNA sy 50.7 7.3 0.00016 48.0 1.2 66 472-555 589-655 (933)
279 COG4545 Glutaredoxin-related p 49.9 44 0.00096 28.0 5.2 45 40-86 5-77 (85)
280 cd03032 ArsC_Spx Arsenate Redu 48.7 22 0.00047 32.4 3.8 31 39-71 2-32 (115)
281 cd02156 nt_trans nucleotidyl t 47.9 9.4 0.0002 34.1 1.2 46 444-489 59-105 (105)
282 KOG1247 Methionyl-tRNA synthet 46.2 21 0.00045 39.6 3.6 59 478-551 337-395 (567)
283 PRK01655 spxA transcriptional 45.3 25 0.00054 32.9 3.7 31 39-71 2-32 (131)
284 PRK10853 putative reductase; P 45.0 26 0.00055 32.3 3.7 31 39-71 2-32 (118)
285 PF02470 MCE: mce related prot 44.8 71 0.0015 26.8 6.2 48 603-650 4-51 (81)
286 PF11801 Tom37_C: Tom37 C-term 43.2 27 0.00059 34.3 3.7 37 128-164 113-153 (168)
287 COG1393 ArsC Arsenate reductas 42.8 33 0.00071 31.6 4.0 32 38-71 2-33 (117)
288 PRK13344 spxA transcriptional 39.8 40 0.00087 31.6 4.2 33 39-73 2-34 (132)
289 PRK12559 transcriptional regul 39.3 36 0.00078 31.9 3.8 31 39-71 2-32 (131)
290 cd03031 GRX_GRX_like Glutaredo 39.2 1.2E+02 0.0025 29.2 7.3 46 48-94 15-80 (147)
291 TIGR00412 redox_disulf_2 small 39.2 1E+02 0.0022 25.6 6.2 41 45-86 6-61 (76)
292 PF08671 SinI: Anti-repressor 38.7 40 0.00088 23.1 2.8 22 509-530 8-29 (30)
293 KOG0434 Isoleucyl-tRNA synthet 37.5 66 0.0014 38.1 6.0 88 255-342 46-172 (1070)
294 PRK10824 glutaredoxin-4; Provi 37.4 91 0.002 28.6 6.0 48 47-95 28-91 (115)
295 cd03036 ArsC_like Arsenate Red 37.2 35 0.00075 30.9 3.2 31 39-71 1-31 (111)
296 KOG0432 Valyl-tRNA synthetase 36.9 47 0.001 40.4 4.9 97 448-545 553-675 (995)
297 cd02973 TRX_GRX_like Thioredox 36.5 85 0.0018 24.9 5.2 45 39-86 3-64 (67)
298 PRK12759 bifunctional gluaredo 36.4 77 0.0017 35.8 6.5 52 39-93 4-79 (410)
299 cd02977 ArsC_family Arsenate R 34.9 41 0.0009 29.8 3.3 31 39-71 1-31 (105)
300 PF13192 Thioredoxin_3: Thiore 34.3 1.2E+02 0.0025 25.2 5.8 41 46-87 7-62 (76)
301 cd03033 ArsC_15kD Arsenate Red 33.9 47 0.001 30.3 3.5 31 39-71 2-32 (113)
302 cd04777 HTH_MerR-like_sg1 Heli 33.5 50 0.0011 29.5 3.6 25 506-530 44-68 (107)
303 cd03035 ArsC_Yffb Arsenate Red 33.2 52 0.0011 29.5 3.6 31 39-71 1-31 (105)
304 TIGR01616 nitro_assoc nitrogen 31.4 55 0.0012 30.5 3.6 31 39-71 3-33 (126)
305 cd04769 HTH_MerR2 Helix-Turn-H 31.1 54 0.0012 29.9 3.5 47 484-530 11-69 (116)
306 KOG2804 Phosphorylcholine tran 30.2 32 0.00069 36.6 1.9 80 254-340 67-177 (348)
307 TIGR02044 CueR Cu(I)-responsiv 28.9 66 0.0014 29.8 3.7 46 484-529 11-69 (127)
308 TIGR01617 arsC_related transcr 28.7 61 0.0013 29.5 3.4 31 39-71 1-31 (117)
309 TIGR02047 CadR-PbrR Cd(II)/Pb( 28.2 69 0.0015 29.8 3.7 46 484-529 11-69 (127)
310 PF11417 Inhibitor_G39P: Loade 28.1 1.2E+02 0.0025 25.4 4.6 60 87-156 5-69 (71)
311 KOG2145 Cytoplasmic tryptophan 27.5 50 0.0011 34.9 2.8 59 259-317 96-161 (397)
312 cd04784 HTH_CadR-PbrR Helix-Tu 26.8 74 0.0016 29.4 3.6 47 484-530 11-70 (127)
313 cd03034 ArsC_ArsC Arsenate Red 25.8 81 0.0017 28.5 3.6 31 39-71 1-31 (112)
314 cd01282 HTH_MerR-like_sg3 Heli 25.8 88 0.0019 28.3 3.9 25 506-530 45-69 (112)
315 PF00381 PTS-HPr: PTS HPr comp 24.6 2.1E+02 0.0046 24.2 5.9 73 256-339 9-84 (84)
316 PRK13793 nicotinamide-nucleoti 23.3 1.5E+02 0.0033 29.9 5.2 38 248-294 7-44 (196)
317 TIGR00014 arsC arsenate reduct 22.6 1E+02 0.0022 28.0 3.6 31 39-71 1-31 (114)
318 cd01110 HTH_SoxR Helix-Turn-He 22.5 1E+02 0.0022 29.2 3.7 23 507-529 47-69 (139)
319 cd01108 HTH_CueR Helix-Turn-He 22.5 99 0.0022 28.6 3.6 24 506-529 46-69 (127)
320 cd04787 HTH_HMRTR_unk Helix-Tu 22.4 1E+02 0.0022 28.8 3.7 47 484-530 11-70 (133)
321 cd04770 HTH_HMRTR Helix-Turn-H 22.3 1E+02 0.0022 28.2 3.7 47 484-530 11-70 (123)
322 PF10574 UPF0552: Uncharacteri 21.4 1E+02 0.0022 31.3 3.6 41 603-643 139-182 (224)
323 cd04781 HTH_MerR-like_sg6 Heli 21.4 78 0.0017 29.0 2.6 46 485-530 12-69 (120)
324 smart00422 HTH_MERR helix_turn 21.3 1.6E+02 0.0034 23.6 4.2 21 508-528 48-68 (70)
325 cd04780 HTH_MerR-like_sg5 Heli 21.1 1.3E+02 0.0028 26.4 3.9 46 484-529 11-70 (95)
326 COG0008 GlnS Glutamyl- and glu 20.9 79 0.0017 36.4 3.1 42 518-559 292-333 (472)
327 PTZ00062 glutaredoxin; Provisi 20.7 2.4E+02 0.0052 28.6 6.2 46 47-93 126-187 (204)
328 cd04786 HTH_MerR-like_sg7 Heli 20.5 72 0.0016 29.9 2.2 47 484-530 11-70 (131)
329 PRK15002 redox-sensitivie tran 20.1 1.9E+02 0.0042 27.9 5.1 23 507-529 57-79 (154)
No 1
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=1.4e-168 Score=1458.06 Aligned_cols=714 Identities=79% Similarity=1.291 Sum_probs=658.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---CCccEEEeCCCcEEechHHHHHHHHHhC---CCCCCCHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLRYIGRVG---NFYGQNAYEAG 110 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~L~p~~~~era 110 (758)
|+|+|| +.+++++.+++++|++.|++|+.... |++|+|+++||.+|+||.||++||++.+ .|+|.++.+++
T Consensus 1 ~~~kLy---~~~~S~~~~v~~~L~~lgv~~e~~~~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~erA 77 (722)
T PLN02907 1 MEAKLS---FPPDSPPLAVIAAAKVAGVPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESS 77 (722)
T ss_pred CeEEEE---ECCCCChHHHHHHHHHcCCCcEEeecCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHHHHH
Confidence 667887 66677899999999999999998654 9999999889999999999999999997 68999999999
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 111 EIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 111 ~v~~wl~~~~~~l~~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++++|+.|+........+...++.||.+|+.++||+|+++|+|||++|+.+......+........||||.||+++|.++
T Consensus 78 qV~qWL~~~~~~~~~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~ar 157 (722)
T PLN02907 78 QVDEWLDYAPTFSSGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAE 157 (722)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhC
Confidence 99999999877555667888999999999999999999999999999999865422222222357899999999999999
Q ss_pred ccch--HHHHHHhhhcccCCCCCcccchhhhcccCCCccccccCCCCCCCCCCCCccccCeeeeccCCCCCCCccchhhH
Q 043341 191 YSDS--LDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSK 268 (758)
Q Consensus 191 ~~p~--~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar 268 (758)
|+ |+.+.+++...+++.++...+.+...+ +. .++++.++.++++.+||+++.++|||||||||||||||||||
T Consensus 158 --Ps~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~L~~~~~~~v~tRFaPsPtG~LHiG~ar 232 (722)
T PLN02907 158 --YSDILNEVTAAYVGKRGAGKPAAAKSKEKVA--DA-GKADGAKDKGSFEVDLPGAEEGKVCTRFPPEPSGYLHIGHAK 232 (722)
T ss_pred --CCcchhhHHHHHHHhhccccccccchhhhcc--cc-ccchhccccccccccCccCCCCceEEeeCCCCCCcccHHHHH
Confidence 98 788888876655554333332222211 11 112234455788899999988999999999999999999999
Q ss_pred HHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCch
Q 043341 269 AALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPR 348 (758)
Q Consensus 269 ~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~ 348 (758)
+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++||++++||+|++.|+++|++||++|+||+|+|+.
T Consensus 233 ~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~ 312 (722)
T PLN02907 233 AALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPR 312 (722)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccHHHHHHHHHHHHHcCCeeecCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccc
Q 043341 349 EQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPT 428 (758)
Q Consensus 349 e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~Pt 428 (758)
+++++.+..+|+|+||++++++|+++|++|++|.+.++++|+|+|+|+.++|.+++|+|++|+++.+|+++||+|++|||
T Consensus 313 ~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~Pt 392 (722)
T PLN02907 313 EQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPT 392 (722)
T ss_pred HHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCcccccCCccceeec
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcc
Q 043341 429 YDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFP 508 (758)
Q Consensus 429 Y~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~ 508 (758)
|||||+||||+|||||||||.||+.|+++|.|++++|||+.|++|+|+||++.++|||||++.+||++|+++|||||||+
T Consensus 393 Y~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~p 472 (722)
T PLN02907 393 YDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFP 472 (722)
T ss_pred cCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccCceEEEecCCCCCceeEeecCCC
Q 043341 509 TVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHK 588 (758)
Q Consensus 509 tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp 588 (758)
|+++||||||+|++|++||..+|++++++.|||++|+++||++||+.+||+|||.+..+|+|+|+|++...+.+.+|+||
T Consensus 473 t~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p~~v~~~i~~~~~~~~~~~~p~hp 552 (722)
T PLN02907 473 TVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLTLTDGPETPFVRIIPRHK 552 (722)
T ss_pred cHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecCCEEEEEEcCCCCCceeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999996444999999987666777999999
Q ss_pred CCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEecCCCccccceeEEeecCCC
Q 043341 589 KYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETN 668 (758)
Q Consensus 589 ~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~ 668 (758)
+++++|+|.+.|+++||||++||.+|++|++||||+|||++|+++.+|++|+|+++.|++++++++||+|++|||||+..
T Consensus 553 ~~~~~g~r~~~~~~~i~i~~~D~~~l~~g~~v~L~~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~~ 632 (722)
T PLN02907 553 KYEGAGKKATTFTNRIWLDYADAEAISEGEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTN 632 (722)
T ss_pred CCCccceEEEEECCcEEEEcchHhhcCCCCEEEEcccCCEEEEEEEECCCCcEEEEEEEEccccCCCcCCCeEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEc
Q 043341 669 ELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 669 ~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~i 748 (758)
+.++|++++||+||++++|+++++|+++|||+|+++..||+||++.++++|++|||||+|||+||+.++++++|+|||+|
T Consensus 633 ~~~~~~~~~~d~l~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~i 712 (722)
T PLN02907 633 ELVPLSLVEFDYLITKKKLEEDDNFLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAI 712 (722)
T ss_pred CceEEEEEccccccccCCCccccchhHhcCCCceeEEEEEEcHhHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred CCCCCccccC
Q 043341 749 PDGRQQAVFK 758 (758)
Q Consensus 749 p~g~~~~~~~ 758 (758)
|||++|+|.+
T Consensus 713 p~~~~~~~~~ 722 (722)
T PLN02907 713 PDGRQQKSGK 722 (722)
T ss_pred CCCCcCCCCC
Confidence 9999999975
No 2
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-159 Score=1264.07 Aligned_cols=700 Identities=54% Similarity=0.955 Sum_probs=636.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---CCccEEEeCCCcEEechHHHHHHHHHhC----CCCCCCHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---GSAPTFSFSNGSKLQGTYVLLRYIGRVG----NFYGQNAYEA 109 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---g~vP~L~~~~g~~l~ES~aIl~yL~~~~----~L~p~~~~er 109 (758)
|+|+|. .....++.+..++++..+++++.... ..++ .+..+|..+.++..+..|.++.. .|||.+ .++
T Consensus 1 ~~~~l~---~n~~~ppia~~~~~~a~~~~~~~~~s~s~k~~~-~~~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~ 75 (712)
T KOG1147|consen 1 MGMKLS---ANLEAPPIAYIAALAASAVNVDGKSSFSEKLVD-KQFLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDR 75 (712)
T ss_pred CCceee---cCCCCCchHHHHHHHhhcCCccCcchhhhhhhh-hhccccccccCCccchhhhhhhcccCHhHcCCc-ccH
Confidence 456665 56677777777777777766665433 5566 44558889999999999977554 688877 899
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHh
Q 043341 110 GEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189 (758)
Q Consensus 110 a~v~~wl~~~~~~l~~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~ 189 (758)
++++.|++|+.. ..-..+...+..|+.+|..++||+|.++|+||+++|.++.........+.....+.+|.|||+....
T Consensus 76 ~~vd~w~~~s~~-~~~~~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~ 154 (712)
T KOG1147|consen 76 SQVDHWVSFSST-FSFDEISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEF 154 (712)
T ss_pred HHHHHHHHHhhh-cchHHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhH
Confidence 999999999977 4457899999999999999999999999999999999999753333334334578899999995555
Q ss_pred hccchHHHHHHhhhcccCCCCCcccchhhhcccCCCccccccCCCCCCCCCCCCccccCeeeeccCCCCCCCccchhhHH
Q 043341 190 EYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKA 269 (758)
Q Consensus 190 ~~~p~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~ 269 (758)
. ++.+.+++.+...+++... .|. .+...+++++.++.+||++++|+|+|||||+|+||||||||++
T Consensus 155 ~--~a~~~v~~t~~~~~k~~~a----~k~--------k~s~~~~~~~~~ev~lP~ae~GkVv~RFPPEpSGyLHIGHAKA 220 (712)
T KOG1147|consen 155 Q--EAHNKVLATLVELKKSVNA----GKK--------KESGQKKKKENKEVDLPGAEMGKVVTRFPPEPSGYLHIGHAKA 220 (712)
T ss_pred H--HHHHHHHHHHHhhcccccC----ccc--------cccccccccCCccccCCccccCceEEecCCCCCceeehhhHHH
Confidence 5 5555555555222111111 111 1111133445678899999999999999999999999999999
Q ss_pred HHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchH
Q 043341 270 ALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPRE 349 (758)
Q Consensus 270 al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e 349 (758)
||+|++||..|+|++|+|||||||+++..+|++.|++||..|||++|.++|+||||+.+.+++.+||+.|+||+++++.|
T Consensus 221 ALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E 300 (712)
T KOG1147|consen 221 ALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTE 300 (712)
T ss_pred HHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccc
Q 043341 350 QMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTY 429 (758)
Q Consensus 350 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY 429 (758)
+||.+|..|.++.||++++|+|+++|++|.+|...|..+|+|+|+||.++|++|||||+|||+..+|||+|++|++||||
T Consensus 301 ~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTY 380 (712)
T KOG1147|consen 301 QMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTY 380 (712)
T ss_pred HHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCccccCCeeEecCCCCCCcCCCceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcch
Q 043341 430 DFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPT 509 (758)
Q Consensus 430 ~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~t 509 (758)
||||+|.|+++||||.+|+.|++++.++|+|++++||++.|++|+|+|||+..+.|||||+.+||++|+|.|||||||||
T Consensus 381 DFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpT 460 (712)
T KOG1147|consen 381 DFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPT 460 (712)
T ss_pred ccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhhhhhhheeeeeccCcccCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccCceEEEecCCCCCceeEeecCCCC
Q 043341 510 VQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKK 589 (758)
Q Consensus 510 l~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp~ 589 (758)
++|++|||++.|+|++|++.+|.|++-..++|+++|++|++.|||+|||++||...+.|.++|+|+|+.+.....|.|||
T Consensus 461 VrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~~~~V~v~i~~~~~~~~~~~~PkHkK 540 (712)
T KOG1147|consen 461 VRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVKEDRVEVTITNGPQEEYIEVSPKHKK 540 (712)
T ss_pred hHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeeccCceEEEecCCCCCcchhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999987779999999888776678899999
Q ss_pred CccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEecCCCccccceeEEeecCCCC
Q 043341 590 YEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNE 669 (758)
Q Consensus 590 ~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~ 669 (758)
|+++|++.+.|+++||||+.|++.|.+||+||||+|||++|++|++|++|+|+++.+++++++|+||||.|++|+++.+.
T Consensus 541 n~~lG~K~v~~~~~I~le~~Da~~l~~gEevTlmnWGN~~i~ki~kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt~~ 620 (712)
T KOG1147|consen 541 NPELGEKKVIYSKKILLEQADAEALKEGEEVTLMNWGNAIIKKINKDASGKVTSLSAKLNLDGDFKKTKLKLTWLADTND 620 (712)
T ss_pred CcccCccceeeccceeEeccchhhhcCCcEEEEEeccceeeEEeeccCCceEEEEEEEeccCCccccccceeEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998878
Q ss_pred eeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEcC
Q 043341 670 LVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIP 749 (758)
Q Consensus 670 ~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip 749 (758)
.+++.+.+||+|+|++++++++||.++|||||+++..+++|++++++|.||+|||||+|||+||.+.+..++|+|||+||
T Consensus 621 ~vpv~lv~fd~lItK~~le~dEd~k~f~n~~t~~~~~~~gd~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IP 700 (712)
T KOG1147|consen 621 SVPVDLVDFDHLITKDKLEKDEDFKDFVNPNTVKETLMLGDPAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIP 700 (712)
T ss_pred ccceEEeechhhcchhhcccchhHHHhcCCCccccchhccChhhhccccCceEEEeccceEEeccccCCCCCcEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCCccc
Q 043341 750 DGRQQAV 756 (758)
Q Consensus 750 ~g~~~~~ 756 (758)
|||+.+.
T Consensus 701 dg~t~~~ 707 (712)
T KOG1147|consen 701 DGKTVPR 707 (712)
T ss_pred CCCcCCC
Confidence 9999654
No 3
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=1e-143 Score=1192.90 Aligned_cols=511 Identities=47% Similarity=0.834 Sum_probs=490.9
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTY 320 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~ 320 (758)
.||+++.++|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++||++++
T Consensus 3 ~L~~a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~ 82 (523)
T PLN03233 3 ALEGAIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSF 82 (523)
T ss_pred cCCCCCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcc
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCC
Q 043341 321 TSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPN 400 (758)
Q Consensus 321 ~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~ 400 (758)
||+|++.|+++|++||++|+||+|+|+++++++.|..+++|+||++++++++++|++|.+|...++++++|+|+++.++|
T Consensus 83 qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n 162 (523)
T PLN03233 83 TSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDN 162 (523)
T ss_pred ccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCC
Confidence 99999999999999999999999999999999999889999999999999999999999999889999999999999999
Q ss_pred CCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeec
Q 043341 401 KSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNM 480 (758)
Q Consensus 401 ~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~ 480 (758)
.+++|||++|+++++||++||+|++||||||||+||||+|||||||||.||+.+|++|.|++++|||+.|.+++|+||++
T Consensus 163 ~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~ 242 (523)
T PLN03233 163 GTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNF 242 (523)
T ss_pred CCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcch
Q 043341 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHT 560 (758)
Q Consensus 481 ~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~ 560 (758)
.|+|||||++++||++|.+.|||||||+||++||||||+|+||++|+..+|++++.+.++|++|+++||++|++.|||+|
T Consensus 243 ~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m 322 (523)
T PLN03233 243 MNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFM 322 (523)
T ss_pred CCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCceEEEecCCCCCce--eEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCC
Q 043341 561 AVIEDRRVLLTLTDGPDKPF--VRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQD 638 (758)
Q Consensus 561 ~v~~~~~v~~~i~~~~~~~~--~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~ 638 (758)
||++.+||+|+|+|.+.... .+.+|+||+++++|+|.+.|+++||||++||.+|++|++||||+|||++|+++++|.+
T Consensus 323 ~V~~~~pv~v~i~n~~~~~~~~~~~~p~hP~~~~~G~r~v~~~~~iyIe~~D~~~l~~g~~vrL~~~~~i~~~~~~~d~~ 402 (523)
T PLN03233 323 AIDKADHTALTVTNADEEADFAFSETDCHPKDPGFGKRAMRICDEVLLEKADTEDIQLGEDIVLLRWGVIEISKIDGDLE 402 (523)
T ss_pred EEccCCcEEEEecCCCCccceeccccccCCCCCCCceEEEEECCcEEEEHhHHhhcCCCCEEEeCceeeEEEEEEEecCc
Confidence 99966799999999876532 2389999999999999999999999999999999999999999999999999998866
Q ss_pred CCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCC
Q 043341 639 GNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKR 718 (758)
Q Consensus 639 g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~ 718 (758)
|++ +++++++|+|++|||||+..+.++|++++||+||++++|++++||+++|||+|+.+.+||+|++++++++
T Consensus 403 ~~~-------~~~~d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L~~~~~~~~~~~~~~~~n~~S~~~~~~~~e~~~~~~~~ 475 (523)
T PLN03233 403 GHF-------IPDGDFKAAKKKISWIADVSDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAETDVIGDAGLKTLKE 475 (523)
T ss_pred eEE-------eeCCCCcccccEEEEcCCCCCccceEEEecccccCCCCCCcccChhhhcCCCceEEEeEEEchhHhhCCC
Confidence 643 3567889999999999854568999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeEEEeecCCCCCCCcEEEEEcCCCCCccccC
Q 043341 719 GEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGRQQAVFK 758 (758)
Q Consensus 719 g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip~g~~~~~~~ 758 (758)
|++|||||+|||+||+.++++++|+|||+||||++|.|+.
T Consensus 476 ~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k~~~~ 515 (523)
T PLN03233 476 HDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKKAMSG 515 (523)
T ss_pred CCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCcccccc
Confidence 9999999999999999888889999999999999999873
No 4
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-141 Score=1182.58 Aligned_cols=517 Identities=49% Similarity=0.838 Sum_probs=494.2
Q ss_pred CCCCCCCCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCC
Q 043341 235 RPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIK 314 (758)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~ 314 (758)
.+++.++||+++.++|+|||||||||||||||||+|++||++||+|||+|+||||||||.|+.++|+++|++||+|||++
T Consensus 38 ~~~~~~~L~~a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~ 117 (601)
T PTZ00402 38 EENDKLQLTNAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVS 117 (601)
T ss_pred cccccccCCCCCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEee
Q 043341 315 YET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGK 393 (758)
Q Consensus 315 ~d~-~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k 393 (758)
||+ +++||+|++.|+++|++||++|+||||+|+++++++.+..|++++||++++++++++|++|.+|...++.+++|+|
T Consensus 118 wDe~~~~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~k 197 (601)
T PTZ00402 118 WDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAK 197 (601)
T ss_pred CCCceeeccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEe
Confidence 995 8999999999999999999999999999999999998888999999999999999999999999877889999999
Q ss_pred ecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEe
Q 043341 394 LDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIY 473 (758)
Q Consensus 394 ~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~ 473 (758)
+++.++|.+++|||++|++..+|+++||+|+||||||||||||||+|||||||||.||+.+|++|.||+++|||+.|.++
T Consensus 198 id~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~ 277 (601)
T PTZ00402 198 ISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVE 277 (601)
T ss_pred cccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 474 EFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 474 ~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
||++|++.|+|||||++..+|++|++.||||||+|||++|||||++|++|++||..+|++++++.|||++|+++||++|+
T Consensus 278 h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~ 357 (601)
T PTZ00402 278 DFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILD 357 (601)
T ss_pred EEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhccCceEEEecCCCCCc-eeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEee
Q 043341 554 PVCPRHTAVIEDRRVLLTLTDGPDKP-FVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKE 632 (758)
Q Consensus 554 ~~~~r~~~v~~~~~v~~~i~~~~~~~-~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~ 632 (758)
+.|||+|||+ +|++|+|+|.+... +.+.+|+||+++++|+|.+.|+++||||++||.+|+||++||||+|||+.|.+
T Consensus 358 ~~a~R~maV~--~p~kv~i~~~~~~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~l~~g~~vrL~~~gn~~i~~ 435 (601)
T PTZ00402 358 PSVPRYTVVS--NTLKVRCTVEGQIHLEACEKLLHKKVPDMGEKTYYKSDVIFLDAEDVALLKEGDEVTLMDWGNAYIKN 435 (601)
T ss_pred hcCCceEEEc--CCCEEEEEECCCCcceEeeccCCCCCcccCceEEEECCeEEEEhhhHhhcCCCCEEEEeccCCEEEEE
Confidence 9999999999 69998888876543 46689999999999999999999999999999999999999999999999888
Q ss_pred eee-CCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeec
Q 043341 633 ISR-DQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDS 711 (758)
Q Consensus 633 ~~~-~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~ 711 (758)
+++ +++|+|+++.+.+++++++||+|++|||||+....+++++|+||+||++++|+++++|+++|||+|+.+..||+||
T Consensus 436 ~~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf~~~~p~~~~~~~~~ln~~s~~~~~~~~E~ 515 (601)
T PTZ00402 436 IRRSGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQEVYGEE 515 (601)
T ss_pred EEeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCCCCcceEEEEecccccCCCCCCccccHHHhcCCCChheEEEEEch
Confidence 775 4689999999999999999999999999997556889999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEcCCCCCcccc
Q 043341 712 NMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGRQQAVF 757 (758)
Q Consensus 712 ~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip~g~~~~~~ 757 (758)
++.++++|++|||||+|||+||+ . ..+.|||+||||++|.++
T Consensus 516 ~~~~~~~~~~~QfeR~Gyf~~D~-~---~~~~vl~~ipdg~~~~~~ 557 (601)
T PTZ00402 516 ALSVLKKGDIIQLERRGYYIVDD-V---TPKKVLIAIPDGREKVNH 557 (601)
T ss_pred hHhhCCCCCEEeEEEeEEEEEec-C---CCCeEEEECCCCcccccc
Confidence 99999999999999999999998 3 233489999999999764
No 5
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-138 Score=1152.03 Aligned_cols=509 Identities=36% Similarity=0.601 Sum_probs=485.6
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-Ccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVT 319 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~ 319 (758)
+|+++..++|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||+.|| .++
T Consensus 21 dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~~d~~~~ 100 (554)
T PRK05347 21 DLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWSGELR 100 (554)
T ss_pred HHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCCCCCCce
Confidence 4555566789999999999999999999999999999999999999999999999999999999999999999996 789
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcC----CCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD----GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~----~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+||+|++.|+++|++|+++|+||+|+|+++++++.|.. |++|+||++++++++++|++|.+|.+.++++|+|+|+|
T Consensus 101 ~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~vlR~Kid 180 (554)
T PRK05347 101 YASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAVLRAKID 180 (554)
T ss_pred eeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEEEEEEee
Confidence 99999999999999999999999999999999988764 89999999999999999999999998889999999999
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCC-cceEee
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYE 474 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~-~p~~~~ 474 (758)
+.++|++++|+|++|++..+||++|++|++||||||||+||||+|||||||||.||.+|+++|.|++++||+. .|++|+
T Consensus 181 ~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~ 260 (554)
T PRK05347 181 MASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYE 260 (554)
T ss_pred ccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 899999
Q ss_pred eeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 475 FSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 475 ~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
|+||++.|+|||||++.+||++|.+.|||||||+||++||||||+|+||++|+..+|+|++++.++|++|+++||++|++
T Consensus 261 F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nRk~ld~ 340 (554)
T PRK05347 261 FSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIREDLNE 340 (554)
T ss_pred EEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhccCceEEEecCCCCC-ceeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeec
Q 043341 555 VCPRHTAVIEDRRVLLTLTDGPDK-PFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDW 625 (758)
Q Consensus 555 ~~~r~~~v~~~~~v~~~i~~~~~~-~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~ 625 (758)
.|||+|||. +||+|+|+|.+.. .+.+.+|+||+++++|+|.+.|+++||||++||. +|++|++||||++
T Consensus 341 ~a~R~m~V~--~pv~v~i~n~~~~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~~vrL~~~ 418 (554)
T PRK05347 341 NAPRAMAVL--DPLKLVITNYPEGQVEELEAPNHPEDPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGKEVRLRNA 418 (554)
T ss_pred CCCceEEEc--CCeEEEEEeCCCCceEEEEecCCCCCCcCceEEEEEcCeEEEEhHHhhccccccccccCCCCEEEecCE
Confidence 999999999 6999999998654 3567999999999999999999999999999998 6999999999999
Q ss_pred cceEEeeeeeCCCCCeEEEEEEEecC------CCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCC
Q 043341 626 GNAIVKEISRDQDGNVTQLSGFLHLE------GSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNP 699 (758)
Q Consensus 626 ~n~~~~~~~~~~~g~i~~~~~~~~~~------~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~ 699 (758)
+|++|+++++|++|.|+++.|+|+++ +++||+|++|||||+. ++++|++++||+||++++|++++||+++|||
T Consensus 419 ~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~~-~~v~~~v~~yd~Lf~~~~p~~~~~~~~~iN~ 497 (554)
T PRK05347 419 YVIKCEEVVKDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSAA-HAVPAEVRLYDRLFTVPNPAAGKDFLDFLNP 497 (554)
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeecC-CCEeEEEEEeccccCCCCCCccccHhHhcCC
Confidence 99999999999999999999999986 2678999999999964 6899999999999999999999999999999
Q ss_pred CCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCc
Q 043341 700 CTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQ 754 (758)
Q Consensus 700 ~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~ 754 (758)
+|+.+..||+|+++.++++|++|||||+|||+||. ++++++| || +.+|||+.|
T Consensus 498 ~s~~~~~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~-v~n~~v~l~d~~~k 553 (554)
T PRK05347 498 DSLVIKQGFVEPSLADAKPEDRFQFEREGYFCADK-DSTPGKL-VFNRTVGLRDSWAK 553 (554)
T ss_pred CceEEEeEEEcHHHhhCCCCCEEEEEEeeEEEecC-CCCCCCe-EEEeeeecccccCC
Confidence 99999999999999999999999999999999995 7777887 56 779999866
No 6
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-135 Score=1123.82 Aligned_cols=502 Identities=30% Similarity=0.512 Sum_probs=484.1
Q ss_pred cCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHH
Q 043341 247 IGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFP 326 (758)
Q Consensus 247 ~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~ 326 (758)
.|+|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|+++|+|||++||++++||+|++
T Consensus 49 ~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~ 128 (574)
T PTZ00437 49 GGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFD 128 (574)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
.|+++|.+||++|+||+|+|+++++++.|..+.+|+||++++++||++|++|.+|.+.++++|+|+|+||.++|++|+|+
T Consensus 129 ~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~ 208 (574)
T PTZ00437 129 QLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDF 208 (574)
T ss_pred HHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeeccccccc
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLS 486 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klS 486 (758)
|++|+...+||++||+|++||||||||+||||+|||||||||.||.++++.|.|++++|+|..|.+|+|++||+.+++||
T Consensus 209 v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LS 288 (574)
T PTZ00437 209 IAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLS 288 (574)
T ss_pred eeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccC
Q 043341 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDR 566 (758)
Q Consensus 487 KR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~ 566 (758)
||++..||++|+|.||||||++||++||||||+|+||++|+..+|+|++++.++|++|+++||++||+.|+|+|||+ +
T Consensus 289 KRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~--d 366 (574)
T PTZ00437 289 KRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLREDLDERCERRLMVI--D 366 (574)
T ss_pred ccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred ceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeeccccccc---------cCCCC-EEEEeeccceEEeeeeeC
Q 043341 567 RVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQL---------ISANE-EITLMDWGNAIVKEISRD 636 (758)
Q Consensus 567 ~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~---------l~~g~-~v~L~~~~n~~~~~~~~~ 636 (758)
|++|+|+|.+. .+.+.+|+||+++++|+|.+.|++.||||++||.. |++|+ .||||++|||+|+++++|
T Consensus 367 Pv~v~I~n~~~-~~~~~~p~hP~~~~~G~R~i~~~~~iyIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~~d 445 (574)
T PTZ00437 367 PIKVVVDNWKG-EREFECPNHPRKPELGSRKVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVD 445 (574)
T ss_pred ceEEEEecCCC-ceEEeccCCCCCCcCceEEEEEcCeEEEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEEEC
Confidence 99999999764 46678999999999999999999999999999983 88997 899999999999999999
Q ss_pred CCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCC
Q 043341 637 QDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNL 716 (758)
Q Consensus 637 ~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~ 716 (758)
++|+|+++.|.++++. .+|+|++|||||+. ++++|++++||+||++++|+++++|+++|||+|+.+..||+|+++.++
T Consensus 446 ~~g~v~~~~~~~d~~~-~~k~k~~IhWvs~~-~~v~~evr~Yd~Lf~~~~p~~~~~~~~~iNp~s~~~~~g~~E~~~~~~ 523 (574)
T PTZ00437 446 AAGQPSVIHVDIDFER-KDKPKTNISWVSAT-ACTPVEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVSHGYAEKGIENA 523 (574)
T ss_pred CCCCEEEEEEEecccc-cccCCCeEEEeecC-CceeEEEEeccccccCCCCCccccHhhhCCCCceEEEEEEEchhhhhC
Confidence 9999999999999974 68888899999974 689999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCcc
Q 043341 717 KRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQA 755 (758)
Q Consensus 717 ~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~~ 755 (758)
++|++|||||+|||+||+ ++++++|| | +.++||+.|.
T Consensus 524 ~~~~~~QfeR~Gyf~vD~-ds~~~~~v-fNr~v~Lkd~~~K~ 563 (574)
T PTZ00437 524 KHFESVQAERFGYFVVDP-DTRPDHLV-MNRVLGLREDKEKA 563 (574)
T ss_pred CCCCeEEEEEeEEEEeCC-CCCCCCEE-EEeeeEcccccccc
Confidence 999999999999999998 77788874 6 7799998765
No 7
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=4e-133 Score=1155.50 Aligned_cols=512 Identities=33% Similarity=0.540 Sum_probs=484.2
Q ss_pred CCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-Ccc
Q 043341 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVT 319 (758)
Q Consensus 241 ~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~ 319 (758)
.++....++|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++|| .++
T Consensus 23 ~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~wd~~~~ 102 (771)
T PRK14703 23 DLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHLY 102 (771)
T ss_pred HHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCCCCCCce
Confidence 3455556789999999999999999999999999999999999999999999999999999999999999999999 579
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc----CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM----DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+||+|++.|+++|++||++|+||+|+|+++++++.|. .|++|+||++++++++++|++|.+|.+.++++|+|+|+|
T Consensus 103 ~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~vlR~Kid 182 (771)
T PRK14703 103 YASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKID 182 (771)
T ss_pred EeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeEEEEEee
Confidence 9999999999999999999999999999999998886 689999999999999999999999998888999999999
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhC-CC-cceEe
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLG-VR-KVHIY 473 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg-~~-~p~~~ 473 (758)
|.++|+.++|||+||+++.+||++||+|++||||||||+||||+|||||||||.||.+|+++|.|++++|| +. .|.+|
T Consensus 183 ~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~~~P~~~ 262 (771)
T PRK14703 183 MSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQY 262 (771)
T ss_pred ccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 44 49999
Q ss_pred eeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 474 EFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 474 ~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
+|+|||+.+++||||+++.||++|.+.||||||++||++||||||+|+||++|+..+|++++++.++|++|+++||++||
T Consensus 263 ~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R~~ld 342 (771)
T PRK14703 263 EFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIRDDLN 342 (771)
T ss_pred EEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhhccCceEEEecCCCCC-ceeEeecCCCCC-ccccceEEeeeeeeeecccccc--------ccCCCCEEEEe
Q 043341 554 PVCPRHTAVIEDRRVLLTLTDGPDK-PFVRIIPRHKKY-EGAGEKATTYTKRIWIDHADAQ--------LISANEEITLM 623 (758)
Q Consensus 554 ~~~~r~~~v~~~~~v~~~i~~~~~~-~~~~~~~~hp~~-~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~ 623 (758)
+.|||+|||+ +|++|+|+|.++. .+.+.+|+||++ +++|+|.+.|++.||||++||. +|++|++||||
T Consensus 343 ~~a~R~~~V~--~p~~v~i~n~~~~~~~~~~~p~hp~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~~vrL~ 420 (771)
T PRK14703 343 RRAPRVMAVL--DPLKVVIENLPAGKVEELDLPYWPHDVPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPGREVRLR 420 (771)
T ss_pred cCCCceEEEc--CCeEEEEEeCCCCceEEEeccCCCCCCccCceEEEEEcCeEEEEhhHhhccccccccccCCCCEEEec
Confidence 9999999999 5999999998654 467799999997 8999999999999999999998 79999999999
Q ss_pred eccceEEeeeeeCCCCCeEEEEEEEecCCC-----ccccceeEEeecCCCCeeEEEEEcccccccccccC-CCccccccC
Q 043341 624 DWGNAIVKEISRDQDGNVTQLSGFLHLEGS-----VKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLE-EGEDFLDVL 697 (758)
Q Consensus 624 ~~~n~~~~~~~~~~~g~i~~~~~~~~~~~~-----~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~-~~~~~~~~~ 697 (758)
++|||+|+++++|++|+|++++|+|++++. .+|+|++|||||+. ++++|++++||+||++++|+ +++||+++|
T Consensus 421 ~~~~i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~~-~~v~~~vr~Yd~Lf~~~~p~~~~~~~~~~l 499 (771)
T PRK14703 421 GAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAK-HALPAEVRLYDRLFKVPQPEAADEDFLEFL 499 (771)
T ss_pred ceEEEEEEEEEEcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeecC-CCeeEEEEecccccCCCCCCccccchHhhc
Confidence 999999999999999999999999999764 46788999999964 68999999999999999998 678999999
Q ss_pred CCCCeeeEEEEeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCccc
Q 043341 698 NPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQAV 756 (758)
Q Consensus 698 n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~~~ 756 (758)
||+|+.+..||+||++.++++|++|||||+|||+||+.+++++++ || +.++|+..|.+
T Consensus 500 N~~Sl~~~~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~~~-vfNr~v~lkd~~~~~~ 560 (771)
T PRK14703 500 NPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDAL-VFNRIITLKDTWGARA 560 (771)
T ss_pred CCCCceeEccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCCCe-EEEeecccCccccccc
Confidence 999999999999999999999999999999999999877777776 57 55778776543
No 8
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=3.1e-132 Score=1132.92 Aligned_cols=506 Identities=32% Similarity=0.518 Sum_probs=479.8
Q ss_pred ccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCH
Q 043341 246 EIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325 (758)
Q Consensus 246 ~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~ 325 (758)
..|+|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++||.++|||+|+
T Consensus 261 t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~~~~qSd~f 340 (788)
T PLN02859 261 TGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYF 340 (788)
T ss_pred cCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCCcccccHhH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCC
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRD 405 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D 405 (758)
+.+|++|.+||++|+||+|+|+++++++.|..+.+|+||++++++|+++|++|.+|.+.++++|+|+|+||.++|..|+|
T Consensus 341 ~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~~~rD 420 (788)
T PLN02859 341 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYD 420 (788)
T ss_pred HHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCceeee
Confidence 98889999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccc
Q 043341 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLL 485 (758)
Q Consensus 406 ~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~kl 485 (758)
+|++|+...+|+++||+|++|||||||||||||+|||||||||.||.+|+++|.|++++|||..|.+|||++||+.|++|
T Consensus 421 ~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~~~P~~~~f~rLn~~~t~L 500 (788)
T PLN02859 421 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYVWEYSRLNVTNTVM 500 (788)
T ss_pred ceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCCCCCcEEeeeeECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccc-cccHHHHHHHHHhhccccCCcchhhhc
Q 043341 486 SKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLN-LMEWDKLWTINKKIIDPVCPRHTAVIE 564 (758)
Q Consensus 486 SKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~-~~d~~~l~~~n~~~l~~~~~r~~~v~~ 564 (758)
|||++..||++|+|.||||||++||++||||||+|+||++|+..+|++++.. .|+|+.|+++|++.|++.++|+|||+
T Consensus 501 SKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r~~l~~~a~R~maV~- 579 (788)
T PLN02859 501 SKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIREELNKTAPRTMVVL- 579 (788)
T ss_pred cCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCHHhhCCcCcchheec-
Confidence 9999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred cCceEEEecCCCCCc-eeEee---cCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeeccceEEee
Q 043341 565 DRRVLLTLTDGPDKP-FVRII---PRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWGNAIVKE 632 (758)
Q Consensus 565 ~~~v~~~i~~~~~~~-~~~~~---~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~n~~~~~ 632 (758)
+|++|+|+|.+... +.+.. |.||+++++|+|.++|++.||||++||+ +|+||++||||+.++|+|++
T Consensus 580 -dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~~~rL~pg~~V~L~~~~~i~~~~ 658 (788)
T PLN02859 580 -HPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTD 658 (788)
T ss_pred -CCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhccccccceecCCCCEEEEcceeEEEEEE
Confidence 59999999987644 44445 6666678999999999999999999998 69999999999988999999
Q ss_pred ee-eCCCCCeEEEEEEEecCCCccccceeEEeecCCC---CeeEEEEEcccccccccccCCCccccccCCCCCeeeEE-E
Q 043341 633 IS-RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETN---ELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETA-A 707 (758)
Q Consensus 633 ~~-~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~---~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~-~ 707 (758)
++ +|++|.|++|+|+|+++++ .|+|++|||||+.+ ++++|++|+||+||++++|++.+||+++|||+|+.+.. +
T Consensus 659 ~~~~d~~g~v~el~~~~d~~~~-~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p~~~~~~~~~iNp~S~~v~~~a 737 (788)
T PLN02859 659 VVLADDNETVVEIRAEYDPEKK-TKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELEDWLEDLNPQSKEVISGA 737 (788)
T ss_pred EEEeCCCCCEEEEEEEEccCCC-CccCceEEeeecCCCCCCceeEEEEeehhhcCCCCCcccccHHHhCCCCccEEEece
Confidence 88 8999999999999999875 47799999999642 57999999999999999999989999999999999875 8
Q ss_pred EeeccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCCCCccc
Q 043341 708 IGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDGRQQAV 756 (758)
Q Consensus 708 ~~e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g~~~~~ 756 (758)
++|+++.++++||+|||||.|||+||+ +++++++ || +.++|+..|.+
T Consensus 738 ~~e~~~~~~~~~~~~QfeR~GYF~~D~-ds~~~~~-vfNr~v~Lkd~~~k~~ 787 (788)
T PLN02859 738 YAVPSLKDAKVGDRFQFERLGYFAVDK-DSTPEKL-VFNRTVTLKDSYGKGG 787 (788)
T ss_pred EEcHhHhhCCCCCeEEEEeeeEEeccC-CCCCCCe-EEEeeeeccccccccC
Confidence 999999999999999999999999996 7787877 46 66899988765
No 9
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=6.8e-132 Score=1100.38 Aligned_cols=498 Identities=35% Similarity=0.563 Sum_probs=476.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPDL 328 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~~~ 328 (758)
|+|||||||||||||||||+|++||++||+|||+|+||||||||+|+.++|+++|++||+|||++|| .+++||+|++.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999996 789999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHh----cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCC
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLR 404 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~ 404 (758)
+++|++||++|+||+|+|+++++++.| ..|++|+||++++++++++|++|.+|.+.++++|+|+|+|+.++|..++
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 999999999999999999999999988 4789999999999999999999999998888999999999999999999
Q ss_pred CcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCC-cceEeeeeeeecccc
Q 043341 405 DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMVYT 483 (758)
Q Consensus 405 D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~-~p~~~~~~~l~~~~~ 483 (758)
|+|++|+...+|+++||+|++||||||||+||||+|||||||||.||..|+.+|.|+++++++. .|.+|+|+||++.|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhh
Q 043341 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI 563 (758)
Q Consensus 484 klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~ 563 (758)
|||||++..+|++|+|.|||||||+||++||||||+|+||++|++.+|.+++...++|..|+++|++.+++.++|+|||.
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeeccceEEeeeee
Q 043341 564 EDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWGNAIVKEISR 635 (758)
Q Consensus 564 ~~~~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~n~~~~~~~~ 635 (758)
+|++|+|+|.+...+...+|+||+++++|+|.+.|++.||||++||. +|+||++||||++|||+|+++++
T Consensus 321 --d~~kl~i~~~~~~~~~~~~p~~p~~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~i~~~~~~~ 398 (522)
T TIGR00440 321 --DPVEVVIENLSDEYELATIPNHPNTPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEK 398 (522)
T ss_pred --ccceEEEecCCCCceEEeccCCCCChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEEEEEEEEEe
Confidence 58999999986544566899999999999999999999999999998 69999999999999999999999
Q ss_pred CCCCCeEEEEEEEecC------CCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEe
Q 043341 636 DQDGNVTQLSGFLHLE------GSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIG 709 (758)
Q Consensus 636 ~~~g~i~~~~~~~~~~------~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~ 709 (758)
|++|.|++++|+|+++ +++||+|++|||||+. ++++|++|+||+||++++|+++++|+++|||+|+.+.+||+
T Consensus 399 d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~~-~~~~~evr~yd~Lf~~~~p~~~d~~~~~~np~s~~~~~~~~ 477 (522)
T TIGR00440 399 DAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSAS-SKYPTETRLYDRLFKVPNPGAPDDFLSVINPESLVIKQGFM 477 (522)
T ss_pred cCCCCEEEEEEEEccccccCCccccccCCcEEEeeecC-CCeeEEEEecccccCCCCCCccccHhhhCCCCceEEEEEEE
Confidence 9999999999999986 4678999999999964 68999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEE---EEcCCC
Q 043341 710 DSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVL---FAIPDG 751 (758)
Q Consensus 710 e~~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~---~~ip~g 751 (758)
|+++.++++|++|||||+|||+||++++++++| || +.+|||
T Consensus 478 E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~-v~Nr~v~l~d~ 521 (522)
T TIGR00440 478 EHSLGDAVANKRFQFEREGYFCLDSKESTTEKV-VFNRTVSLKDA 521 (522)
T ss_pred chhHhhCCCCCEEEEEEeEEEEEccCCCCCCCe-EEEeeeecCCC
Confidence 999999999999999999999999878888888 46 456665
No 10
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=5.5e-122 Score=1030.66 Aligned_cols=483 Identities=38% Similarity=0.670 Sum_probs=447.4
Q ss_pred CCCCCCCCCCCccccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhC
Q 043341 233 GSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312 (758)
Q Consensus 233 ~~~~~~~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LG 312 (758)
+++.++.++||++++++|||||||||||||||||||+|++||++|++|||+|+||||||||+|+.++|+++|++||+|||
T Consensus 77 ~~~~~~~~~L~~a~~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLG 156 (560)
T TIGR00463 77 EKKAKGLIELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLG 156 (560)
T ss_pred cccccCCCCCCCCcCCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcC
Confidence 34456778999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEe
Q 043341 313 IKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRG 392 (758)
Q Consensus 313 i~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~ 392 (758)
+.||++++||+|++.|+++|++||++|+||+|+|+++++++.|..|++|+||++++++|+++|++|.+|.+.++++|+|+
T Consensus 157 i~~d~~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~ 236 (560)
T TIGR00463 157 VKGDEVVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRA 236 (560)
T ss_pred CCCCccccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceE
Q 043341 393 KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHI 472 (758)
Q Consensus 393 k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~ 472 (758)
|+|+.++|++++|+|++|++.++||++||+|++||||||||+||||+|||||||||.||..+|++|.+++.+|||..|.+
T Consensus 237 K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~ 316 (560)
T TIGR00463 237 KTDYKHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEF 316 (560)
T ss_pred ECCCcCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccc-cccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhh
Q 043341 473 YEFSRLNMVYT-LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI 551 (758)
Q Consensus 473 ~~~~~l~~~~~-klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~ 551 (758)
+||.++.+.+. +||||.....+.+|.+.||||||++||++|||+|++|+||++|+..+|++++.+.++|++|+++||++
T Consensus 317 ~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~ 396 (560)
T TIGR00463 317 IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKI 396 (560)
T ss_pred EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHH
Confidence 99988887754 88887755555569999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcchhhhccCceEEEecCCCCCceeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEe
Q 043341 552 IDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVK 631 (758)
Q Consensus 552 l~~~~~r~~~v~~~~~v~~~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~ 631 (758)
||+.|||+|||+ +|++|+|+|.+. .....+|+||+++++|+|.+.|++.||||++||.. .+|++||||+|||++|+
T Consensus 397 id~~a~R~~~V~--~p~~v~i~~~~~-~~~~~~p~hp~~~~~G~r~v~~~~~i~i~~~D~~~-~~g~~vrL~~~~ni~~~ 472 (560)
T TIGR00463 397 IDPIARRYFFIW--NPVKIEIEGAPE-PKIVERPLHPDNPEVGERKLIYYGEIYVDKDDLEV-IEGEEVRLMDWGNVIIT 472 (560)
T ss_pred hCcCCCceEEEc--CCcEEEEecCCC-CeeEEccCCCCCCCCceEEEEECCeEEEEHHHHhh-CCCCEEEEeecccEEEE
Confidence 999999999999 699999999763 34568999999999999999999999999999986 69999999999999999
Q ss_pred eeeeCCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeec
Q 043341 632 EISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDS 711 (758)
Q Consensus 632 ~~~~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~ 711 (758)
+++++ |. +.+..+++++.++++++|||||+ .+.++|++++||+|++ .|++|+
T Consensus 473 ~~~~~--~~---~~~~~~~~~~~~~~~~~i~Wv~~-~~~v~~~~~~~d~l~~----------------------~~~~E~ 524 (560)
T TIGR00463 473 KKNDD--GS---MYHSLNLEGARKKGKHIIHWLPD-KDAVKVKVIMPDHLIT----------------------EGRLEE 524 (560)
T ss_pred EEeCC--Cc---EEeccccccccccCCCEEEECcC-CCceEEEEEcCccccc----------------------cCccCc
Confidence 88654 43 34667778888889999999996 4689999999999853 478888
Q ss_pred cccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEcC
Q 043341 712 NMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIP 749 (758)
Q Consensus 712 ~~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ip 749 (758)
++...++||+|||||+|||+||+. ..+++++++ .||
T Consensus 525 ~~~~~~~~~~vQfeR~Gy~~~D~~-~~~~~~~~f-~h~ 560 (560)
T TIGR00463 525 DASFEEVGDIIQFERFGFYRLDSA-DKDGKVYVY-THP 560 (560)
T ss_pred chhhcCCCCEEEEEEeEEEEEccC-CCCCceEEE-ecC
Confidence 888889999999999999999994 334566655 665
No 11
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.8e-121 Score=1021.91 Aligned_cols=526 Identities=31% Similarity=0.509 Sum_probs=469.2
Q ss_pred cccChhHHHHHHHHHhhccchHHHHHHhhhcccCCCCCcccchhhhcccCCCc-cccccCCCCCCCCCCCCccccCeeee
Q 043341 174 SKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDV-SEKGKAGSRPSFEVDLPDAEIGKVRL 252 (758)
Q Consensus 174 ~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~v~~ 252 (758)
+...|.|..-...+... ++++++++...... ..+.+-.. ...+. ..+++++++....++||+++.++|+|
T Consensus 34 ~~~~pelr~~~~ei~~~----v~~~v~~vn~ms~e----e~~~~l~~-~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~t 104 (567)
T PRK04156 34 MGENPELRSKAKEIIPI----VKEVVEEVNSLSLE----EQRERLEE-LAPELLEEEEEKKEEKKGLPPLPNAEKGKVVM 104 (567)
T ss_pred hccChhhhhhhhhHHHH----HHHHHHHHhcCCHH----HHHHHHHH-hChhhhhhhhhhcccccCCCCCCCCCCCeEEE
Confidence 56778888777776554 77787777543211 11111111 11111 11222233444567899999999999
Q ss_pred ccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCc--ccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHH
Q 043341 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP--AKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLME 330 (758)
Q Consensus 253 RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~--~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~ 330 (758)
||||||||||||||||+|++||++||+|||+|+|||||||| +|+.++|+++|++||+|||++||++++||+|++.|++
T Consensus 105 RFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr~~~y~~ 184 (567)
T PRK04156 105 RFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDRLEIYYE 184 (567)
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEE
Q 043341 331 MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYR 410 (758)
Q Consensus 331 ~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R 410 (758)
+|++||++|+||+|+|+++++++.+..|++|+||++++++++++|++|.+|.+.++++++|+|+++.+.|++++|||+||
T Consensus 185 ~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R 264 (567)
T PRK04156 185 YARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFR 264 (567)
T ss_pred HHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEE
Confidence 99999999999999999999999998899999999999999999999999998888999999999999999999999999
Q ss_pred eCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccchhh
Q 043341 411 CNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKL 490 (758)
Q Consensus 411 ~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR~~ 490 (758)
++..+||++|++|++||||||||+||||+|||||||||.||+.|+++|.|++++|||+.|.++||++|++.|+|||||++
T Consensus 265 ~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~kLSKR~~ 344 (567)
T PRK04156 265 IVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLSTSKI 344 (567)
T ss_pred EcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhccCceEE
Q 043341 491 LWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLL 570 (758)
Q Consensus 491 ~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~~~~v~~ 570 (758)
..+|++|.+.||||||++||++||++|++|+||++|++.+|++++++.|+|++|+++||++||+.|+|+|||. +||+|
T Consensus 345 ~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~--~pv~v 422 (567)
T PRK04156 345 RKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVR--DPVEL 422 (567)
T ss_pred hhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEEC--CceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 69999
Q ss_pred EecCCCCCceeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEec
Q 043341 571 TLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHL 650 (758)
Q Consensus 571 ~i~~~~~~~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~ 650 (758)
+|+|.+ +..+.+|+||+++++|+|.+.|++.||||++||..+ |++||||+||||+|+++. .+.|+|++
T Consensus 423 ~i~~~~--~~~~~~p~hP~~~~~G~r~v~~~~~i~i~~~D~~~~--g~~vrL~~~~nv~~~~~~--------~~~~~~~~ 490 (567)
T PRK04156 423 EIEGAE--PLEAKIPLHPDRPERGEREIPVGGKVYVSSDDLEAE--GKMVRLMDLFNVEITGVS--------VDKARYHS 490 (567)
T ss_pred EEcCCC--ceEEEcCCCCCCCCCceEEEEECCeEEEEHHHHhhc--CCEEEeeeEEEEEEEEEE--------EEEEEEcC
Confidence 999953 567799999999999999999999999999999977 999999999999998765 46788887
Q ss_pred C--CCccccc-eeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEEEEeeccccCCCCCCeEEEEEe
Q 043341 651 E--GSVKNTK-LKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERK 727 (758)
Q Consensus 651 ~--~~~kk~k-~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~~~~e~~~~~~~~g~~~QfeR~ 727 (758)
+ .+.||+| ++|||||+. ++++|+++.++. .+.+|++||++.++++|++|||||+
T Consensus 491 ~~~~~~~k~~~~~i~Wv~~~-~~v~~~v~~~~~----------------------~~~~g~~E~~~~~~~~~~~~QfeR~ 547 (567)
T PRK04156 491 DDLEEARKNKAPIIQWVPED-ESVPVRVLKPDG----------------------GDIEGLAEPDVADLEVDDIVQFERF 547 (567)
T ss_pred CccccccccCCCEEEEccCC-CCeeEEEECCCc----------------------eEEEEEEchhHhhCCCCCEEEEEEe
Confidence 5 3567777 589999974 689999998531 3567999999999999999999999
Q ss_pred eEEEeecCCCCCCCcEEEEEc
Q 043341 728 GYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 728 Gyf~~D~~~~~~~~~~~~~~i 748 (758)
|||+||+. .+..++.+|.
T Consensus 548 Gf~~~D~~---~~~~~~~~f~ 565 (567)
T PRK04156 548 GFVRIDSV---EDDEVVAYFA 565 (567)
T ss_pred EEEEEecC---CCCeEEEEEe
Confidence 99999995 2445666663
No 12
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-122 Score=990.37 Aligned_cols=497 Identities=33% Similarity=0.517 Sum_probs=473.8
Q ss_pred ccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCH
Q 043341 246 EIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325 (758)
Q Consensus 246 ~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~ 325 (758)
..|+|+|||||+|||+||||||++..+|+.||+.+||.+.||||||||+++.++|.++|.+...|||.+|-.++|+||||
T Consensus 245 TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148|consen 245 TGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred hCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCceeeecchhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHhcC-CCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCC
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMD-GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLR 404 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~ 404 (758)
+.++++|.+||++|+||+|+|+.|++++.|.. ...|++|++++||||++|++|++|.+++++++||+|.++++.|+.|.
T Consensus 325 dqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~~Mr~Gk~~eGeAtLRmK~dl~~~~p~m~ 404 (764)
T KOG1148|consen 325 DQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFEDMRDGKYEEGEATLRMKQDLESGNPQMW 404 (764)
T ss_pred HHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHHHHhcCCcCcChhheeeeeeccCCCcccc
Confidence 99999999999999999999999999998853 34799999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeeccccc
Q 043341 405 DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTL 484 (758)
Q Consensus 405 D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~k 484 (758)
|+|.||+...+|||+|++|++||||||++|+.|+++.|||++|+.||..+...|.|++.+|++..|.+|+|+|||+.++.
T Consensus 405 DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~iY~P~qwEYgRLNv~~tv 484 (764)
T KOG1148|consen 405 DLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEIYCPVQWEYGRLNVTYTV 484 (764)
T ss_pred ccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhcccchhhhhceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchhhhc
Q 043341 485 LSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIE 564 (758)
Q Consensus 485 lSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~v~~ 564 (758)
|||||+..||.+|+|.||||||+.||.+|||||++|+||.+||...|++.+..++|...|++..|++|+..+||.|+|+
T Consensus 485 ~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~VRd~Ln~tapR~M~Vl- 563 (764)
T KOG1148|consen 485 VSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAAVRDYLNDTAPRLMFVL- 563 (764)
T ss_pred eehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHHHHHHHhccCcceEEee-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEecCCCCCc-eeEeecCCCCCccccceEEeeeeeeeecccccc--------ccCCCCEEEEeeccceE-Eeeee
Q 043341 565 DRRVLLTLTDGPDKP-FVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ--------LISANEEITLMDWGNAI-VKEIS 634 (758)
Q Consensus 565 ~~~v~~~i~~~~~~~-~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~--------~l~~g~~v~L~~~~n~~-~~~~~ 634 (758)
+|++|+|+|.+... +.+.+|..|.+|.+|.+.++|++.||||++||+ +|+||+.|+|++.|.++ +..+.
T Consensus 564 -eplkVti~N~~~~~~~~i~iPd~P~dp~~g~~~Vpft~vIYIErSDFkee~dK~f~RLtpgQpVGLr~~~~vi~~~~vv 642 (764)
T KOG1148|consen 564 -EPLKVTIENLSDDYPESIEIPDFPGDPTSGFHKVPFTRVIYIERSDFKEEDDKDFFRLTPGQPVGLRYAGYVIRVVKVV 642 (764)
T ss_pred -cceEEEEecCCcchhhhccCCCCCCCCccccccccccceEEEEcccccccCCcchhccCCCCcceeEeecceEEEEEEe
Confidence 59999999987653 577999999999999999999999999999998 59999999999999877 47788
Q ss_pred eCCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCC-CccccccCCCCCeeeEE-EEeecc
Q 043341 635 RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEE-GEDFLDVLNPCTRFETA-AIGDSN 712 (758)
Q Consensus 635 ~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~-~~~~~~~~n~~s~~~~~-~~~e~~ 712 (758)
+|+.|.|++|.++|++....+|+|+.|||||+ .++.||+|+|++||+++||++ .+.|++.|||+|+.++. +++|..
T Consensus 643 kD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse--~Pv~vEvRlye~LFks~NP~d~~e~fLsDiNp~S~~V~~~a~~D~~ 720 (764)
T KOG1148|consen 643 KDDEGTVIEIHVEYDPASKKKKPKAFIHWVSE--SPVKVEVRLYEQLFKSENPADLNEVFLSDINPDSLVVVKGALADKS 720 (764)
T ss_pred eCCCCceEEEEEEecccccccCCceeEEeccC--CCeEeehhHHHHHhccCCccchhHHHHHhcCccchhhhhhhhhhhh
Confidence 99999999999999985556899999999997 579999999999999999997 45799999999999986 799999
Q ss_pred ccCCCCCCeEEEEEeeEEEeecCCCCCCCcEEEEEc
Q 043341 713 MRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAI 748 (758)
Q Consensus 713 ~~~~~~g~~~QfeR~Gyf~~D~~~~~~~~~~~~~~i 748 (758)
+...+++|+|||||.|||+||+ +++.++ +|++.+
T Consensus 721 ~~~a~v~DrFQfeRiGYF~VDk-DSt~~k-LVfNRt 754 (764)
T KOG1148|consen 721 ISDAKVYDRFQFERIGYFCVDK-DSTPGK-LVFNRT 754 (764)
T ss_pred hcccchhhhHhhhhcceeEecC-CCCCce-EEEEeE
Confidence 9999999999999999999999 776665 556653
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-86 Score=734.27 Aligned_cols=445 Identities=32% Similarity=0.425 Sum_probs=373.5
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFPDL 328 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~~~ 328 (758)
|||||||||||||||||||+||+||++||+|||+|||||||||++|+.++|+++|+++|+|||++||+ +++||+|++.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 89999999999
Q ss_pred HHHHHHHHHhCceeccCCchH---HHHHHhcCCC--C-CcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCC
Q 043341 329 MEMAENLIRQGKAYVDDTPRE---QMQKERMDGI--E-SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKS 402 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e---~~~~~~~~~~--~-~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~ 402 (758)
++++++||++|+||+|.|+++ ++|+.+..+. + +.+|+ ++++..|++|..... ++++|+|+|+++.+.+..
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~ 165 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV 165 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence 999999999999999999995 4555443322 2 44444 566677778877333 789999999998777778
Q ss_pred CCCcEEEEeCCCC-Ccc-cCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeec
Q 043341 403 LRDPVYYRCNPIP-HHR-IGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNM 480 (758)
Q Consensus 403 ~~D~vl~R~~~~~-~~~-~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~ 480 (758)
++|+|.+|+...+ |++ ++++|+||||||||||||||+|||||||||+||++||++|.|||++|||+.|.++||++|..
T Consensus 166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~ 245 (472)
T COG0008 166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN 245 (472)
T ss_pred cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence 9999999998877 888 99999999999999999999999999999999999999999999999999999999988776
Q ss_pred c-cccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcc
Q 043341 481 V-YTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRH 559 (758)
Q Consensus 481 ~-~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~ 559 (758)
. |+|||||++..-+......||+||+++|+.+++++|+++++++.|++..|++..+....+..+..+|++.|+.+++|+
T Consensus 246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry 325 (472)
T COG0008 246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY 325 (472)
T ss_pred CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence 4 349999998544444477899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCceEEEecCCCC--CceeEeecCCCCCccccceEEeeee--eeeeccccccccCCCCEEEEeeccceEEeee-e
Q 043341 560 TAVIEDRRVLLTLTDGPD--KPFVRIIPRHKKYEGAGEKATTYTK--RIWIDHADAQLISANEEITLMDWGNAIVKEI-S 634 (758)
Q Consensus 560 ~~v~~~~~v~~~i~~~~~--~~~~~~~~~hp~~~~~g~r~~~~~~--~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~-~ 634 (758)
|++. |+++.+++... .......|+ ++++|.+.+.+.+ .++|++.|+..+.++++++||.+.++.+.++ .
T Consensus 326 ~~~~---p~e~~~~~l~~~~~~~~~~~~~---~~e~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 399 (472)
T COG0008 326 MRVD---PVEVVIENLKPHLEEEGATLPL---NPEMGERVVPLTKETLIEIERLDFFFFEDKEEVRLKRLANVIVAEVLE 399 (472)
T ss_pred HHhC---CHHHHHHhhhhhhhhhcccCCC---CHHHHhhhhhhccchHHHHhHHHHHHhcchHHHHHHhhcchHHHHHHH
Confidence 9993 67666777543 122334444 7899999999999 9999999999888888999999988754333 2
Q ss_pred eCCCCCeEEEEEEEecCCCccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeeeEE-EEeeccc
Q 043341 635 RDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETA-AIGDSNM 713 (758)
Q Consensus 635 ~~~~g~i~~~~~~~~~~~~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~~~-~~~e~~~ 713 (758)
+...+.+.. .+.+...+|||++.. .+|+++.+ .+++.++...+ ++++|.+
T Consensus 400 ~~~~~l~~~----------~~~~~~i~~wv~~~~-----------~~~~vk~~--------~~~~plr~a~tG~~~~p~l 450 (472)
T COG0008 400 KDAEGLITS----------DWTKENIIHWVKAVA-----------RLFGVKGP--------KLFPPLRVALTGGYVEPEL 450 (472)
T ss_pred HHHHhhhhc----------cccHHHHHHHHHHHH-----------HHhCCCCc--------ccchhhHHHhcCCccCCCH
Confidence 222222111 122234799998532 44555544 47777888877 9999998
Q ss_pred cCCCCC--CeEEEEEeeEEEee
Q 043341 714 RNLKRG--EILQLERKGYFRCD 733 (758)
Q Consensus 714 ~~~~~g--~~~QfeR~Gyf~~D 733 (758)
...... ..+||+|.|||++|
T Consensus 451 ~~~~~~~g~~~q~~Rl~~~~~~ 472 (472)
T COG0008 451 ADTIELLGKEVQFERLGYALAD 472 (472)
T ss_pred HHHHHhhchHHHHHHHHHHhhC
Confidence 655444 45999999999875
No 14
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=2.5e-71 Score=559.96 Aligned_cols=238 Identities=56% Similarity=0.956 Sum_probs=228.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDL 328 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~ 328 (758)
+|||||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++++++|++||+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEE
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVY 408 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl 408 (758)
++++++|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999995
Q ss_pred EEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecccccccch
Q 043341 409 YRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKR 488 (758)
Q Consensus 409 ~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klSKR 488 (758)
|++.++.|+++|||||||||||++|||||||||+||+.+|++|.|++++||++.|.+|+|+||+..|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 1122234455799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCc
Q 043341 489 KLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558 (758)
Q Consensus 489 ~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r 558 (758)
++..+|++|.+.||||||++|+.+++++|+.|+||++|+...|.+++++.|||++|+++||++||+.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998
No 15
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-68 Score=584.60 Aligned_cols=273 Identities=24% Similarity=0.375 Sum_probs=243.6
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHHHH
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLME 330 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~ 330 (758)
.|||||||||||||||||+||+||++||++||+|||||||||++|+.++++++|+++|+||||+||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC-----
Q 043341 331 MAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ----- 397 (758)
Q Consensus 331 ~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~----- 397 (758)
++++|+++|+||.|+|+++++++.|. ..|+|.||+++.++.+ ..+.++++|+|++..
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~----------~~g~~~~iR~k~p~~~~~f~ 150 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL----------NCNKPFVVRLKKPNHTMSFT 150 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH----------hcCCCeEEEEEcCCCceeee
Confidence 99999999999999999999876542 3589999999988741 235689999999641
Q ss_pred --------CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCc
Q 043341 398 --------DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK 469 (758)
Q Consensus 398 --------~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~ 469 (758)
..+..+.||||+|+| |+||||||||||||+|||||||||+||+++|++|.+|++||||+.
T Consensus 151 D~v~G~i~~~~~~~~D~Vi~R~D------------g~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~ 218 (433)
T PRK12410 151 DAIKGEVSFEPDEIDSFVILRAD------------KTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNK 218 (433)
T ss_pred eccceeEEeccccCCCeEEEcCC------------CCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCC
Confidence 234567888888887 569999999999999999999999999999999999999999986
Q ss_pred -ceEeeee-eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcc---------------
Q 043341 470 -VHIYEFS-RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGA--------------- 532 (758)
Q Consensus 470 -p~~~~~~-~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~--------------- 532 (758)
|.+.|+. .++..|+|||||++ ..+|+++|++|+.|+||++|+...|.
T Consensus 219 pp~f~Hlpli~~~~g~KLSKR~~----------------~~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~~ 282 (433)
T PRK12410 219 EITYAHLPIILNEEGKKMSKRDN----------------ASSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIEW 282 (433)
T ss_pred CCeEEEeeeeeCCCCCeeecccC----------------hhhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHHh
Confidence 5555553 45667899999995 25789999999999999999988884
Q ss_pred ------ccccccccHHHHHHHHHhhccccCCcchh
Q 043341 533 ------SKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 533 ------~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
+++++.||++||+++|++||+..++..++
T Consensus 283 F~~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~~l~ 317 (433)
T PRK12410 283 FDIEKISKSPAKFDLKKLRFINREHLKMLDDERLS 317 (433)
T ss_pred CCHhhCCCccccCCHHHHHHHHHHHHHhCCHHHHH
Confidence 78999999999999999999988887665
No 16
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=2.4e-67 Score=533.29 Aligned_cols=238 Identities=41% Similarity=0.695 Sum_probs=227.0
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCccc--chHHHHHHHHHHHHHhCCCCCCcccccCCHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAK--ESNEFVDNLLKDIETLGIKYETVTYTSDYFP 326 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r--~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~ 326 (758)
+|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++++.|++||+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999994
Q ss_pred EEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeeccccccc
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLS 486 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~~~klS 486 (758)
|+++|+.|.++|||||||+|||++|||||||||+||..+|++|.|++++||++.|.++|+.+++..|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 11122334446999999999999999999999999999999999999999999999999999988899999
Q ss_pred chhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCc
Q 043341 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558 (758)
Q Consensus 487 KR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r 558 (758)
||++..+|++|.+.|||||+++|+++++++|++|++|++|+...|.+.++..+++++|+++||++|++.|+|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 17
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=2.5e-69 Score=578.08 Aligned_cols=297 Identities=34% Similarity=0.460 Sum_probs=250.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~~ 327 (758)
+|||||||||||+|||||||+||+||++||++||+|+|||||||+.|+.++|+++|+++|+||||+|| .+++||+|+++
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhcC--CCCCcCCCCCHHHHHHHH-HHHhcCccCCceeeEEeeecCCCCCCCCC
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERMD--GIESKCRNNSIEENMKLW-KEMIAGSERGLECCLRGKLDMQDPNKSLR 404 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~--~~~~~~r~~~~~~~~~~~-~~~~~g~~~~~~~~~R~k~~~~~~~~~~~ 404 (758)
|++++++|+++|+||+|+|+++++++.+.. +.++.++....+..+.++ ++|.++...+.++++|+|+++... ..++
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999988754 555667777777777777 778888888999999999998755 6788
Q ss_pred CcEEEEeCCCC---CcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeee-eeeec
Q 043341 405 DPVYYRCNPIP---HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEF-SRLNM 480 (758)
Q Consensus 405 D~vl~R~~~~~---~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~-~~l~~ 480 (758)
|.|.++..... |...+.+++|+||||||||||||+|||||||||.||+.+|++|.+|+++|||+.|.+.|. ..++.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 88888876544 566666778999999999999999999999999999999999999999999998866665 57888
Q ss_pred ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc---------cccccccHHHHHH
Q 043341 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS---------KNLNLMEWDKLWT 546 (758)
Q Consensus 481 ~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~---------~~~~~~d~~~l~~ 546 (758)
.|+|||||++...|+.+.+.+|++|+.+++++|+++|+++++.++++...++. +++..||.++|.|
T Consensus 240 ~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~kL~w 314 (314)
T PF00749_consen 240 DGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRKKLDW 314 (314)
T ss_dssp TSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHHHHHH
T ss_pred CCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHHHhCC
Confidence 89999999999998888888999999999999999999998888887665544 4455666666654
No 18
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=7.7e-67 Score=579.68 Aligned_cols=288 Identities=26% Similarity=0.362 Sum_probs=240.5
Q ss_pred cccCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-------
Q 043341 245 AEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET------- 317 (758)
Q Consensus 245 ~~~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~------- 317 (758)
...++|||||||||||+|||||||+||+||++||++||+|||||||||++|++++++++|+++|+||||+||+
T Consensus 41 ~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~ 120 (535)
T PLN02627 41 SKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGE 120 (535)
T ss_pred CCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred --cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCce
Q 043341 318 --VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLE 387 (758)
Q Consensus 318 --~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~ 387 (758)
+|+||+|+++|++++++|+++|+||+|+|+++++++.|. ..|++.||+++.+++.+.+. .+.+
T Consensus 121 ~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~-------~g~~ 193 (535)
T PLN02627 121 YGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELA-------KGTP 193 (535)
T ss_pred CCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHh-------CCCC
Confidence 489999999999999999999999999999998876542 35899999999998754332 2456
Q ss_pred eeEEeeecC--------------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCC
Q 043341 388 CCLRGKLDM--------------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHD 453 (758)
Q Consensus 388 ~~~R~k~~~--------------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~ 453 (758)
+++|+|++. ...+..++||||+|+| |+||||||||||||+|||||||||+||++
T Consensus 194 ~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~D------------G~PtY~fA~vVDD~~mgITHViRG~D~l~ 261 (535)
T PLN02627 194 YTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSN------------GQPVYNFCVAVDDATMGITHVIRAEEHLP 261 (535)
T ss_pred ceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecC------------CCccccccceecccccCCcEEEechhhhc
Confidence 789998753 1235578999999998 46999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCcceEeeeee-eecccccccchh----hhhhhhcCccC----------CCCCC---CcchHHHHHH
Q 043341 454 RNAQYYRIQEDLGVRKVHIYEFSR-LNMVYTLLSKRK----LLWFVQNGKVD----------GWDDP---RFPTVQGIVR 515 (758)
Q Consensus 454 ~~~~~~~l~~alg~~~p~~~~~~~-l~~~~~klSKR~----~~~li~~g~~~----------gwddp---r~~tl~~l~~ 515 (758)
||++|.+|++||||+.|.++|+.. ++-.|+|||||+ +..|.+.|+.+ ||..+ .+
T Consensus 262 nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~-------- 333 (535)
T PLN02627 262 NTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGTENEI-------- 333 (535)
T ss_pred ChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCc--------
Confidence 999999999999999995554433 234478999998 45666666655 66422 12
Q ss_pred cCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 516 RGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 516 ~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
++.+++.+.|....++++++.||.+||.|+|++||.......++
T Consensus 334 --~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~ 377 (535)
T PLN02627 334 --FTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELV 377 (535)
T ss_pred --CCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHH
Confidence 45555555555555778999999999999999999977655443
No 19
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8e-66 Score=566.28 Aligned_cols=275 Identities=28% Similarity=0.381 Sum_probs=234.4
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDL 328 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~~~~ 328 (758)
+|||||||||||+|||||||+||+||++||++||+|||||||||++|+.+++++.|+++|+||||+||++++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecC----
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM---- 396 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~---- 396 (758)
++++++|+++|+||.|+|+++++++.|. ..|++.||+++.++..+.. ..+.++++|+|++.
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~-------~~g~~~~iR~k~~~~~~~ 154 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALE-------AEGRKPHWRFKLDDEPIS 154 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHH-------hcCCCceEEEecCCCceE
Confidence 9999999999999999999999866542 3589999999988754321 23457788988732
Q ss_pred ---------CCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCC
Q 043341 397 ---------QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV 467 (758)
Q Consensus 397 ---------~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~ 467 (758)
..++..++|+||+|+||. ||||||||||||+|||||||||+||+++|++|.+|++||||
T Consensus 155 ~~D~i~G~~~~~~~~~~D~Vi~R~dg~------------PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~ 222 (445)
T PRK12558 155 WDDLIRGEQSIDAASLSDPVLIRADGS------------YLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGA 222 (445)
T ss_pred EEEEeeeEeecccccCCCeEEEecCCC------------ccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCC
Confidence 124567899999999854 99999999999999999999999999999999999999999
Q ss_pred CcceEeeeeeeec----ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhc------------
Q 043341 468 RKVHIYEFSRLNM----VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQG------------ 531 (758)
Q Consensus 468 ~~p~~~~~~~l~~----~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g------------ 531 (758)
+.| .|+|+|+ .|+|||||++ .+++.++|++||.|+||++|+...|
T Consensus 223 ~~P---~f~H~pli~~~~g~KLSKR~g----------------~~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~ 283 (445)
T PRK12558 223 KPP---VFAHLSLLTGADGKGLSKRLG----------------GLSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSME 283 (445)
T ss_pred CCC---eEEEcccccCCCcccccccCC----------------CcCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHH
Confidence 999 5555554 4679999983 1355555555555555555555444
Q ss_pred ----------cccccccccHHHHHHHHHhhccccCCcchh
Q 043341 532 ----------ASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 532 ----------~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
++++++.||.+||.|+|++||...+...++
T Consensus 284 eli~~F~l~~~~~~~~~fd~~KL~w~N~~~i~~~~~~~l~ 323 (445)
T PRK12558 284 ELAESFDLSSFSRAPAKFDPEDLERLNARLLHALPFEAVK 323 (445)
T ss_pred HHHHhCCHhhCCCccccCCHHHHHHHHHHHHHhCCHHHHH
Confidence 457899999999999999999977665544
No 20
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-65 Score=533.05 Aligned_cols=276 Identities=26% Similarity=0.423 Sum_probs=243.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------cc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------VT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~~ 319 (758)
.|||||||||||+||||.+|||++||+|||++||+|||||||||.+|.+.+..++|.++|+|+||.||+ +|
T Consensus 33 ~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY 112 (524)
T KOG1149|consen 33 CVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGPY 112 (524)
T ss_pred eeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCch
Confidence 399999999999999999999999999999999999999999999999999999999999999999994 36
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHh--------cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER--------MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~--------~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
.||+|.++|.++|++|++.|+||+|+|+.+.+...+ .+.|+++|++.+.++.-+ + ...+.++++|
T Consensus 113 ~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~----~---lakg~pf~iR 185 (524)
T KOG1149|consen 113 EQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ----K---LAKGTPFTIR 185 (524)
T ss_pred hhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH----H---HhcCCCeeEE
Confidence 799999999999999999999999999998765443 246999999999887532 2 2456799999
Q ss_pred eeecCCCC------------C--CCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHH
Q 043341 392 GKLDMQDP------------N--KSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQ 457 (758)
Q Consensus 392 ~k~~~~~~------------~--~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~ 457 (758)
||++...+ + .+..|||+.|+| |+||||||||||||+|||||||||.||..+|.+
T Consensus 186 Frl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmKSD------------gfPTYHfAnVVDDh~M~IsHViRGeEWlpST~K 253 (524)
T KOG1149|consen 186 FRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMKSD------------GFPTYHFANVVDDHLMGISHVIRGEEWLPSTLK 253 (524)
T ss_pred EecCCCCCChhhhhhhhhhccccccCCCcEEEecC------------CCcceeeeeeecchhcchhheeecchhccccHH
Confidence 99975321 1 225677777776 679999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEeeeeeeecc----cccccchh----hhhhhhcCccC----------CCCCCCcchHHHHHHcCCC
Q 043341 458 YYRIQEDLGVRKVHIYEFSRLNMV----YTLLSKRK----LLWFVQNGKVD----------GWDDPRFPTVQGIVRRGLL 519 (758)
Q Consensus 458 ~~~l~~alg~~~p~~~~~~~l~~~----~~klSKR~----~~~li~~g~~~----------gwddpr~~tl~~l~~~G~~ 519 (758)
|..+|+||||.+| +|+||++. +.|||||+ +..|.++|++| ||.+++.- .+++
T Consensus 254 H~lLYkAfgW~pP---kFaHlpLl~n~d~sKLSKRqgD~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-------~f~s 323 (524)
T KOG1149|consen 254 HILLYKAFGWQPP---KFAHLPLLLNPDGSKLSKRQGDASVSHYREQGYLPEALLNYIALLGWGFRTEN-------EFFS 323 (524)
T ss_pred HHHHHHHhCCCCC---ceeeeeeeecCCcchhhhhcCcchHHHHHHcCCChHHHHHHHHHcCCCccccc-------cccc
Confidence 9999999999999 68887764 78999999 56677889987 99887652 5689
Q ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 520 VEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 520 ~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
.+++.+-|...+++++++.+|.++|+.+||.+|+
T Consensus 324 l~eLieqF~i~~ltk~~a~ld~ekL~~~Nr~~lq 357 (524)
T KOG1149|consen 324 LEELIEQFSIERLTKSNAILDSEKLRFLNRLHLQ 357 (524)
T ss_pred HHHHHHHhchhhhcccccccCHHHHHHHHHHHHh
Confidence 9999988888889999999999999999999996
No 21
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.2e-64 Score=556.75 Aligned_cols=283 Identities=24% Similarity=0.359 Sum_probs=238.3
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHH
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFP 326 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~ 326 (758)
.+|||||||||||+|||||||+||+||++||++||+|+|||||||++|+.++++++|+++|+|||++|| .+|+||+|++
T Consensus 3 ~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~~ 82 (513)
T PRK14895 3 NNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRNN 82 (513)
T ss_pred CCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcHH
Confidence 469999999999999999999999999999999999999999999999999999999999999999999 6899999999
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCC-
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQ- 397 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~- 397 (758)
+|++++++|+++|+||+|+|+++++++.|. ..|++.||+.+.++. ..+.++++|||++..
T Consensus 83 ~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~~~ 151 (513)
T PRK14895 83 LYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPREG 151 (513)
T ss_pred HHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCCCC
Confidence 999999999999999999999999877652 358999999876531 124578999999753
Q ss_pred -------------CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHH
Q 043341 398 -------------DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQED 464 (758)
Q Consensus 398 -------------~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~a 464 (758)
.++..++|+|+.|+||. ||||||++||||+|||||||||.||+.|+++|.+++++
T Consensus 152 ~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~------------ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~a 219 (513)
T PRK14895 152 SITIHDTLQGEVVIENSHIDDMVLLRADGT------------ATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQA 219 (513)
T ss_pred ceEEEeecccceecccccCCCcEEEEeCCC------------cchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHH
Confidence 35667899999999965 99999999999999999999999999999999999999
Q ss_pred hCCCcceEeeeeeee-cccccccchhh----hhhhhcCccC----------CCCCCCcchHHHHHHcCCCHHHHHHHHHH
Q 043341 465 LGVRKVHIYEFSRLN-MVYTLLSKRKL----LWFVQNGKVD----------GWDDPRFPTVQGIVRRGLLVEALIQFILE 529 (758)
Q Consensus 465 lg~~~p~~~~~~~l~-~~~~klSKR~~----~~li~~g~~~----------gwddpr~~tl~~l~~~G~~~eal~~~~~~ 529 (758)
|||+.|.+.|+..+. ..|.|||||++ ..|.+.|+.| ||.... + .=++.+++.+.|..
T Consensus 220 LG~~~p~~~H~plv~~~~g~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~~----~----e~~~~~el~~~F~~ 291 (513)
T PRK14895 220 FGYAVPSMTHIPLIHGADGAKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHGD----D----EIISMTQAIDWFNL 291 (513)
T ss_pred cCCCCCeEEEEEeEEcCCCCccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCCC----c----CCCCHHHHHhhCCH
Confidence 999999777776554 77899999994 4444445544 443110 0 00344444444444
Q ss_pred hccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 530 QGASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 530 ~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
..++++++.||++||.|+|++||.......++
T Consensus 292 ~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~ 323 (513)
T PRK14895 292 DSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLT 323 (513)
T ss_pred HhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45668899999999999999999987765544
No 22
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.7e-64 Score=561.99 Aligned_cols=279 Identities=30% Similarity=0.415 Sum_probs=236.1
Q ss_pred cCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCc--------
Q 043341 247 IGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETV-------- 318 (758)
Q Consensus 247 ~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~-------- 318 (758)
+++|||||||||||+|||||+|+||+||++||++||+|||||||||++|++++++++|+++|+||||+||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred ccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeE
Q 043341 319 TYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390 (758)
Q Consensus 319 ~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (758)
|+||+|+++|++++++|+++|+||+|+|+++++++.|. ..|++.||+++.++..+. +. .|.++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~---~~----~g~~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAAR---LA----AGEPPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH---Hh----CCCCeeE
Confidence 89999999999999999999999999999999876542 358999999998875432 32 3558899
Q ss_pred EeeecCC--------------CCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchH
Q 043341 391 RGKLDMQ--------------DPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA 456 (758)
Q Consensus 391 R~k~~~~--------------~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~ 456 (758)
|||++.. ..+..++|+||+|+|| +||||||++||||+|+|||||||+||+.+++
T Consensus 155 R~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG------------~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~ 222 (476)
T PRK01406 155 RFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDG------------TPTYNFAVVVDDHLMGITHVIRGEDHLSNTP 222 (476)
T ss_pred EEEcCCCCceEEEEeccceEEeccccCCCcEEEecCC------------CccccchHHHHHHHcCCCEEEECchhhcCHH
Confidence 9998643 2456679999999985 5999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcceEeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHH-------
Q 043341 457 QYYRIQEDLGVRKVHIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFIL------- 528 (758)
Q Consensus 457 ~~~~l~~alg~~~p~~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~------- 528 (758)
+|.+++++|||+.|.+.|+.. ++..|.|||||++. .+|.+++++||.|+|+.+|+.
T Consensus 223 ~q~~l~~alG~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~ 286 (476)
T PRK01406 223 KQILLYEALGWEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHG 286 (476)
T ss_pred HHHHHHHHhCCCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999996555543 46678999999931 244445555554444444443
Q ss_pred ---------------HhccccccccccHHHHHHHHHhhccccCCcch
Q 043341 529 ---------------EQGASKNLNLMEWDKLWTINKKIIDPVCPRHT 560 (758)
Q Consensus 529 ---------------~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~ 560 (758)
...+++++..||+++|.++|++||...+...+
T Consensus 287 ~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~N~~~i~~~~~~~l 333 (476)
T PRK01406 287 DQEIFSLEELIELFDLERVSKSPARFDIKKLDWLNGHYIRELDPEEL 333 (476)
T ss_pred ccccCCHHHHHHhcChhhCCCCCccccHHHHHHHHHHHHHhCCHHHH
Confidence 33466889999999999999999997665443
No 23
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=1.1e-63 Score=560.19 Aligned_cols=287 Identities=29% Similarity=0.444 Sum_probs=244.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~~~ 327 (758)
+|||||||||||+|||||+|+||+||++||++||+|||||||||++|+.++++++|+++|+||||+|| .+++||+|+++
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhc--------CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCC-
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERM--------DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD- 398 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~- 398 (758)
|++++++|+++|+||+|+|+++++++.|. .+|+++||+++.+++.+.+ ..+.++++|+|++...
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~-------~~g~~~~iR~k~~~~~~ 153 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKL-------AKGIPPVVRFKIPQEAV 153 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHH-------hcCCCceEEEEcCCCCc
Confidence 99999999999999999999999876541 3589999999988865432 2356899999997532
Q ss_pred -------------CCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHh
Q 043341 399 -------------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL 465 (758)
Q Consensus 399 -------------~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~al 465 (758)
++..++|+|++|+|| +||||||++||||+|||||||||.||+.++++|.+++++|
T Consensus 154 ~~~~D~~~G~~~~~~~~~~D~Vl~RsdG------------~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aL 221 (470)
T TIGR00464 154 VSFNDQVRGEITFQNSELDDFVILRSDG------------SPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQAL 221 (470)
T ss_pred eeEEecccceEEecCccCCCeEEEecCC------------CcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHc
Confidence 456788999999985 4999999999999999999999999999999999999999
Q ss_pred CCCcceEeeeee-eecccccccchh----hhhhhhcCccC----------CCCCCCcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 466 GVRKVHIYEFSR-LNMVYTLLSKRK----LLWFVQNGKVD----------GWDDPRFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 466 g~~~p~~~~~~~-l~~~~~klSKR~----~~~li~~g~~~----------gwddpr~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
|++.|.+.|+.. ++..|+|||||+ +..|+++|+++ ||++|.. +..++.+++..+|...
T Consensus 222 g~~~p~~~H~p~l~~~~g~kLSKR~g~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-------~e~~~~~~~i~~f~l~ 294 (470)
T TIGR00464 222 GWKIPVFAHLPMILDEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDD-------QEFFSLEELIEIFSLN 294 (470)
T ss_pred CCCCCeEEEEeeeecCCCccccccCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-------cccCCHHHHHHhcCcc
Confidence 999997666643 566789999999 56666666554 6654431 1114444444444444
Q ss_pred ccccccccccHHHHHHHHHhhccccCCcchh
Q 043341 531 GASKNLNLMEWDKLWTINKKIIDPVCPRHTA 561 (758)
Q Consensus 531 g~~~~~~~~d~~~l~~~n~~~l~~~~~r~~~ 561 (758)
.+++++..||+++|.++|++||+..+...++
T Consensus 295 ~~~~~~~~fd~~kL~~~N~~~l~~l~~~~l~ 325 (470)
T TIGR00464 295 RVSKSPAKFDWKKLQWLNAHYIKELPDEELF 325 (470)
T ss_pred cCCCCCCeecHHHHHHHHHHHHHhCCHHHHH
Confidence 5788999999999999999999988766554
No 24
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=4.5e-64 Score=521.48 Aligned_cols=241 Identities=25% Similarity=0.311 Sum_probs=209.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFPDL 328 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~~~ 328 (758)
++|||||||||+|||||+|+||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999995 67999999999
Q ss_pred HHHHHHHHHhCceeccCCchHHHHHHh-c--CCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCC-------
Q 043341 329 MEMAENLIRQGKAYVDDTPREQMQKER-M--DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD------- 398 (758)
Q Consensus 329 ~~~~~~Li~~G~aY~~~~~~e~~~~~~-~--~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~------- 398 (758)
++++++|+++|+||+|+|+++++++.+ . ..|++.||+ +. ....+.++++|+|++...
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~------------~~~~~~~~~~Rlk~~~~~~~~~D~~ 147 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GL------------LGRPARPAAWRLRVPDGVIAFDDRL 147 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-cc------------ccccCCCceEEEecCCCCceEEEee
Confidence 999999999999999999999998774 2 358899998 32 012356789999987421
Q ss_pred -------CCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcce
Q 043341 399 -------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVH 471 (758)
Q Consensus 399 -------~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~ 471 (758)
.+..+.|||++|+| |+|||||||+||||+|||||||||+||+.+|++|.+|+++|||+.|.
T Consensus 148 ~g~~~~~~~~~~~D~vi~R~D------------g~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~ 215 (272)
T TIGR03838 148 QGPQQQDLAAAVGDFVLRRAD------------GLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPR 215 (272)
T ss_pred eeEEEecCcccCCCEEEEecC------------CCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCe
Confidence 13455677777766 57999999999999999999999999999999999999999999997
Q ss_pred Eeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHH
Q 043341 472 IYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVE 521 (758)
Q Consensus 472 ~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~e 521 (758)
+.|+.. ++..|+|||||++...|+++ +|+.+++++|.++|+++.
T Consensus 216 y~H~pll~~~~g~kLSKR~~~~~i~~~------~~~~~~~~~l~~lG~~~~ 260 (272)
T TIGR03838 216 YLHLPLVVNADGEKLSKQNGAPALDLS------HPLPALLAALRFLGLPPP 260 (272)
T ss_pred EEechhhhCCCCCeeeccCCccchhcC------CcHHHHHHHHHHcCCCCC
Confidence 666654 47789999999988888774 577778888888887653
No 25
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=7.9e-63 Score=517.27 Aligned_cols=242 Identities=26% Similarity=0.291 Sum_probs=215.0
Q ss_pred cCeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC-CcccccCCH
Q 043341 247 IGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE-TVTYTSDYF 325 (758)
Q Consensus 247 ~~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d-~~~~~S~~~ 325 (758)
+.+|||||||||||+|||||+|+||+||++||++||+|+|||||||+.|+.++|++.|++||+||||+|| .+++||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHh------cCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec----
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKER------MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD---- 395 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~------~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~---- 395 (758)
+.|++++++|+++|+||+|+|+++++++.+ ...|+|+||+++.+++ .++++|+|++
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~--------------~~~~iRlk~~~~~~ 148 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR--------------NPPAWRLRVPDAVI 148 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc--------------CCceEEEEcCCCce
Confidence 999999999999999999999999997765 1358999999886642 2679999987
Q ss_pred ----------CCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHh
Q 043341 396 ----------MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDL 465 (758)
Q Consensus 396 ----------~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~al 465 (758)
..+.+..++||||+|++ |+||||||||||||+|||||||||+||+.+|++|.+|+++|
T Consensus 149 ~~~D~~~G~~~~~~~~~~~D~Vi~R~d------------g~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 216 (299)
T PRK05710 149 AFDDRLQGRQHQDLALAVGDFVLRRAD------------GLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLL 216 (299)
T ss_pred EEEEecceeEeeCCCCCCCCEEEEecC------------CCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHc
Confidence 12345578999999998 56999999999999999999999999999999999999999
Q ss_pred CCCcceEeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc
Q 043341 466 GVRKVHIYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK 534 (758)
Q Consensus 466 g~~~p~~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~ 534 (758)
||+.|.|.|+.. ++..|+|||||++... |+. .|+.|+ +.+++...|.+.
T Consensus 217 g~~~P~y~H~pll~~~~g~kLSKr~~~~~----------------i~~---~g~~p~-l~~~l~~lG~~~ 266 (299)
T PRK05710 217 GLPTPRYLHLPLVLNADGQKLSKQNGAPA----------------LDA---AGPLPV-LAAALRFLGQPP 266 (299)
T ss_pred CCCCCeEEEeecccCCCCCcccccCCccc----------------hhh---cCcCHH-HHHHHHHcCCCC
Confidence 999997777754 4678999999996433 333 678998 889998888764
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=1.1e-58 Score=468.50 Aligned_cols=205 Identities=40% Similarity=0.650 Sum_probs=194.1
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC-cccccCCHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSDYFPD 327 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~-~~~~S~~~~~ 327 (758)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||+.|+.++++++|++||+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcE
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPV 407 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~v 407 (758)
|++++++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeeeecc-ccccc
Q 043341 408 YYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMV-YTLLS 486 (758)
Q Consensus 408 l~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l~~~-~~klS 486 (758)
|+|||||||||||++|||||||||+||..+|++|.+++++||++.|.+.|+.+|... |+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 469999999999999999999999999999999999999999999988888877654 58999
Q ss_pred chhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc-----------------------ccccccHHH
Q 043341 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK-----------------------NLNLMEWDK 543 (758)
Q Consensus 487 KR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~-----------------------~~~~~d~~~ 543 (758)
||++. +||+++|++|++|++|++|+...|.+. +++.||+++
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~~~~d~~k 219 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSADATFDWAK 219 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCCcccCHHH
Confidence 99953 589999999999999999999999765 788999999
Q ss_pred HHHHHHhhccc
Q 043341 544 LWTINKKIIDP 554 (758)
Q Consensus 544 l~~~n~~~l~~ 554 (758)
|+++|+++|+.
T Consensus 220 L~~~N~~~l~~ 230 (230)
T cd00418 220 LEWLNREYIRE 230 (230)
T ss_pred HHHHHHHHhcC
Confidence 99999999973
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.3e-54 Score=438.78 Aligned_cols=205 Identities=31% Similarity=0.464 Sum_probs=186.9
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCC---------cc
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET---------VT 319 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~---------~~ 319 (758)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++++++|.+||+||||+||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 489999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred cccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCC
Q 043341 320 YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP 399 (758)
Q Consensus 320 ~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~ 399 (758)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999877
Q ss_pred CCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-
Q 043341 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL- 478 (758)
Q Consensus 400 ~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l- 478 (758)
+|+|||+||++|||++|||||||||+||+.++++|.+++++||++.|.++|+..+
T Consensus 101 ------------------------dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 ------------------------DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred ------------------------CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 2679999999999999999999999999999999999999999999988777664
Q ss_pred ecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc-----------------------cc
Q 043341 479 NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS-----------------------KN 535 (758)
Q Consensus 479 ~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~-----------------------~~ 535 (758)
+..|.|||||+++ +||+++|++|++|++|+.|+...|.+ ++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~~~~~~~~ 220 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFDLERVSKS 220 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCCHhhCCcC
Confidence 7789999999953 47788888888888888777665553 56
Q ss_pred cccccHHHHHHHHHhhcc
Q 043341 536 LNLMEWDKLWTINKKIID 553 (758)
Q Consensus 536 ~~~~d~~~l~~~n~~~l~ 553 (758)
+..||++||+++|+++|.
T Consensus 221 ~~~~d~~kL~~~n~~~l~ 238 (239)
T cd00808 221 PAIFDPEKLDWLNGQYIR 238 (239)
T ss_pred cCcCCHHHHHHHHHHHhh
Confidence 778888999999998885
No 28
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=4.5e-44 Score=350.99 Aligned_cols=170 Identities=32% Similarity=0.572 Sum_probs=139.6
Q ss_pred CCcchhhhccCceEEEecCCCCC-ceeEeecCCCCCccccceEEeeeeeeeeccccccccCCCCEEEEeeccceEEeeee
Q 043341 556 CPRHTAVIEDRRVLLTLTDGPDK-PFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEIS 634 (758)
Q Consensus 556 ~~r~~~v~~~~~v~~~i~~~~~~-~~~~~~~~hp~~~~~g~r~~~~~~~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~ 634 (758)
|||+|||+ +||+|+|+|.|+. .+.+.+|+||+++++|+|.+.|++.||||++||.+|++|++||||+|||++|++++
T Consensus 1 A~R~maV~--dPv~v~I~n~~~~~~~~~~~p~hPk~~~~G~r~v~~~~~i~Ie~~D~~~l~~g~~v~L~~~~ni~i~~~~ 78 (174)
T PF03950_consen 1 APRYMAVL--DPVKVKITNFPEDEPEEIEVPLHPKNPELGTREVPFSKTIYIERSDFFRLAPGKEVRLMYWGNIKITSIE 78 (174)
T ss_dssp SEEE-EEC--SEEEEEECT--SSSEEEEEEESSTT-GGG-EEEEEECSEEEEEGGG--SEETTCEEEETTTEEEEEEEEE
T ss_pred CCcEEEEC--CCEEEEEEcCCCCCEEEEEecCCCCCccCceEEEEECceEEEEhhHhhhccCCCEEEEeccceEEEEEee
Confidence 79999999 6999999999853 46789999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEEEEecCC--CccccceeEEeecCCCCeeEEEEEcccccccccccCCCccccccCCCCCeee-EEEEeec
Q 043341 635 RDQDGNVTQLSGFLHLEG--SVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFE-TAAIGDS 711 (758)
Q Consensus 635 ~~~~g~i~~~~~~~~~~~--~~kk~k~~i~Wv~~~~~~~~~~~~~y~~L~~~~~~~~~~~~~~~~n~~s~~~-~~~~~e~ 711 (758)
+|++|.|+++.|++++++ ..+|+|++|||||+ .++++|++|+||+||++++ ++ +++ +||+|+.+ ..|++|+
T Consensus 79 ~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~-~~~v~~e~r~yd~Lf~~~~-~~--~~~--inp~s~~~~~~~~~E~ 152 (174)
T PF03950_consen 79 KDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSA-KDSVPVEVRLYDHLFTVDN-DE--DDL--INPNSLKVVKNGLVEP 152 (174)
T ss_dssp E-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEG-CC-EEEEEEEE--SBSSS--GG--TGG--B-TTSEEEEEEEEE-G
T ss_pred ecCCCCEEEEEEEEecccccCCcccCcEEEEccC-CCCeeeEEEEehhhcCCCc-cc--cce--ECCCCcEEccCEEEch
Confidence 999999999999999864 23677789999997 4689999999999999988 65 444 99999999 5999999
Q ss_pred cccCCCCCCeEEEEEeeEEEee
Q 043341 712 NMRNLKRGEILQLERKGYFRCD 733 (758)
Q Consensus 712 ~~~~~~~g~~~QfeR~Gyf~~D 733 (758)
++.++++||+|||||+|||+||
T Consensus 153 ~~~~~k~g~~vQfER~Gyf~vD 174 (174)
T PF03950_consen 153 ALKNLKPGDIVQFERRGYFRVD 174 (174)
T ss_dssp GGGGS-TT-EEEETTTEEEEEE
T ss_pred hHHhCCCCCEEeEEEeeEEEeC
Confidence 9999999999999999999998
No 29
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.3e-32 Score=296.91 Aligned_cols=261 Identities=18% Similarity=0.264 Sum_probs=192.7
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCC-C
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIK-Y 315 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~-~ 315 (758)
-|+++.+.||||||++++-+++.| .|...||.+|+|+|++.. .+.|++++.+|++.||+. +
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 499999999999999987666665 444789999999997633 336899999999999996 5
Q ss_pred CCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 316 ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 316 d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
+..+++|++++.|.+++++||++|+||+.....-.++..+.+.|....+..+.++ +..|. +++
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~-------l~~ga----------r~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEE-------LQAGA----------RVE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhH-------Hhhcc----------ccc
Confidence 7899999999999999999999999998643222222222233333332223332 33331 222
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccCccEEee-CCCCC-CchHHHHHHHHHh-C-CC
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEGITHALR-SSEYH-DRNAQYYRIQEDL-G-VR 468 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~githvir-g~d~~-~~~~~~~~l~~al-g-~~ 468 (758)
....+.+..||||||.....+|.|.+|| .|+|+||++|++. +++..--.+.. |.|++ .|....++..+|. | -+
T Consensus 172 ~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~ 251 (464)
T COG0215 172 VDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKP 251 (464)
T ss_pred cccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCc
Confidence 2234567789999999999999999999 9999999999853 11111111111 33433 3444444444554 5 34
Q ss_pred cceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 469 KVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 469 ~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
..+||.| ++|+++|+|||||.++ +.|++++++. +.|+++|.|+++. ++|++.+|+.+.|...
T Consensus 252 ~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~-HYR~pl~fsee~L~~A 314 (464)
T COG0215 252 FAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSS-HYRSPLDFSEELLEEA 314 (464)
T ss_pred ceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHH-HhCCccccCHHHHHHH
Confidence 4799999 8999999999999974 5699999999 9999999999986 9999999999999887
Q ss_pred HH
Q 043341 548 NK 549 (758)
Q Consensus 548 n~ 549 (758)
.+
T Consensus 315 ~~ 316 (464)
T COG0215 315 KK 316 (464)
T ss_pred HH
Confidence 54
No 30
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=9.2e-31 Score=271.86 Aligned_cols=259 Identities=15% Similarity=0.262 Sum_probs=172.8
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCCCC
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~~d 316 (758)
-|+++.+.||||+|++++-+++.| +|...++.+|+|+|.+.. ...|++.+.+||+.|||.++
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 399999999999999987666555 788899999999997533 33689999999999999985
Q ss_pred -CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 317 -TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 317 -~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
..+++|++++.+.+++++|+++|+||......-.++-.+.+.|....+ ...++ |..|.. .+
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~-~~~~~-------l~~~~~----------~~ 156 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSN-QDLED-------LEAGAR----------VE 156 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT--SHHH-------HHHCHH----------HT
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccc-cchhh-------HHhhhh----------cc
Confidence 788999999999999999999999997652222222223334443333 34433 333311 12
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccC-ccEEeeCCCCC-CchHHHHHHHHHh-CCCc
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEG-ITHALRSSEYH-DRNAQYYRIQEDL-GVRK 469 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~g-ithvirg~d~~-~~~~~~~~l~~al-g~~~ 469 (758)
....+.+..||+|||.....++.|.++| .|+|+||++|++. +++.. ++----|.|++ .|....++..+|+ |-+.
T Consensus 157 ~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~ 236 (300)
T PF01406_consen 157 VDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPF 236 (300)
T ss_dssp T-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-S
T ss_pred cccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchH
Confidence 2234567799999999887789999999 9999999999853 22221 22112366665 6666777666666 6667
Q ss_pred ceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 470 VHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 470 p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
..+|.| +||++.|+|||||.++ +.||++++++ ++|+++|.||++. +++++.+|+++.|....
T Consensus 237 a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~-hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 237 ANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLST-HYRKPLNFSEENLEEAK 299 (300)
T ss_dssp EEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS--TTS-EEE-HHHHHHHH
T ss_pred HHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcC-CCCCccccCHHHHHHhc
Confidence 899999 8999999999999975 4599999987 9999999999985 99999999999998753
No 31
>PLN02946 cysteine-tRNA ligase
Probab=99.95 E-value=5.4e-28 Score=272.75 Aligned_cols=254 Identities=15% Similarity=0.176 Sum_probs=190.2
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCCCC
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~~d 316 (758)
-|+|+|++||||+|+.+..+.++| +|...|+.+|+|+|.+.. ...|.+.+.+|++.|||..+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 699999999999999988887777 678899999999996533 33688999999999999855
Q ss_pred -CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeec
Q 043341 317 -TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLD 395 (758)
Q Consensus 317 -~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~ 395 (758)
..++.|+|++.+.+++++|+++|+||....+ -.+.-.+.+.|... .+++.++ |..|. | ++
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~-VYFdv~~f~~YG~L-s~~~l~~-------l~~g~--------r--v~ 227 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGD-VYFSVDKFPEYGKL-SGRKLED-------NRAGE--------R--VA 227 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCe-EEEecCcchhhhhc-CCCChhH-------hhcCC--------C--CC
Confidence 6788999999999999999999999953311 01111111223222 2233332 43331 1 23
Q ss_pred CCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc----------cccccCccEEeeCCCCCCchHHHHHHHHH
Q 043341 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF----------VDAKEGITHALRSSEYHDRNAQYYRIQED 464 (758)
Q Consensus 396 ~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v----------dD~~~githvirg~d~~~~~~~~~~l~~a 464 (758)
....+.+..||+|||.....++.|.++| +|+|+||++|++ |=|-.|++++ -.|+.|...|.. .+
T Consensus 228 ~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~---FPHHENEiAQse--a~ 302 (557)
T PLN02946 228 VDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLV---FPHHENEIAQSC--AA 302 (557)
T ss_pred cccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccC---CCcccchHHHHH--HH
Confidence 3334667899999998877779999999 999999999994 4444444444 245555555542 22
Q ss_pred hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHH
Q 043341 465 LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDK 543 (758)
Q Consensus 465 lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~ 543 (758)
.|.....+|.| ++|++.|+|||||+++ +.|++++++. |+++++|.|+++. +++++.+|+++.
T Consensus 303 ~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~-hyr~~l~fs~e~ 365 (557)
T PLN02946 303 CCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGT-HYRSPINYSDVQ 365 (557)
T ss_pred hCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeecc-CCCCCcEecHHH
Confidence 56666678887 8999999999999974 5599999987 9999999999984 899999999999
Q ss_pred HHHHHH
Q 043341 544 LWTINK 549 (758)
Q Consensus 544 l~~~n~ 549 (758)
|....+
T Consensus 366 L~~a~~ 371 (557)
T PLN02946 366 LESASE 371 (557)
T ss_pred HHHHHH
Confidence 877743
No 32
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.95 E-value=2.5e-27 Score=267.10 Aligned_cols=267 Identities=19% Similarity=0.289 Sum_probs=199.2
Q ss_pred eccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCC
Q 043341 252 LRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGI 313 (758)
Q Consensus 252 ~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi 313 (758)
.=..|+|+|++||||+|+++..+.++| +|+..|+.+++|+|++.. .+.|.+.+.+++++|||
T Consensus 25 yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI 104 (465)
T TIGR00435 25 YVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNV 104 (465)
T ss_pred EEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 445699999999999999999999998 899999999999997532 34788999999999999
Q ss_pred CCCC-cccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEe
Q 043341 314 KYET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRG 392 (758)
Q Consensus 314 ~~d~-~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~ 392 (758)
.+|. .+++|++.+.+++++++|+++|+||.+....--+...+.+.| |.+.+..+++ |..|. |
T Consensus 105 ~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~y-G~ls~~~~~~-------~~~~~--------~- 167 (465)
T TIGR00435 105 LPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDY-GKLSKQDLDQ-------LEAGA--------R- 167 (465)
T ss_pred CCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchh-ccCCCCCHHH-------Hhccc--------c-
Confidence 9885 578999999999999999999999965411111111111222 2333334332 33331 1
Q ss_pred eecCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc-ccccC--ccEEeeCCCCC-CchHHHHHHHHH-hC
Q 043341 393 KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV-DAKEG--ITHALRSSEYH-DRNAQYYRIQED-LG 466 (758)
Q Consensus 393 k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd-D~~~g--ithvirg~d~~-~~~~~~~~l~~a-lg 466 (758)
++....+.+..||+|||+....++.|.++| .|+|+||++|++. ....| ++.-.-|.||. .|......+-.+ .|
T Consensus 168 -~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g 246 (465)
T TIGR00435 168 -VDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFG 246 (465)
T ss_pred -cCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcC
Confidence 122233567799999999877789999999 8999999999853 22223 22222366765 566666665555 47
Q ss_pred CCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHH
Q 043341 467 VRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLW 545 (758)
Q Consensus 467 ~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~ 545 (758)
.+.+.+|.| ++|.+.|+|||||+++ +.|++++++. ++++++|.|+++. +++++.+|+++.|.
T Consensus 247 ~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~-~~~~~l~fs~~~l~ 309 (465)
T TIGR00435 247 KQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSV-HYRSPLDFSEELLE 309 (465)
T ss_pred CCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhC-CCCCCCccCHHHHH
Confidence 666778777 7999999999999974 4589999988 9999999999975 89999999999998
Q ss_pred HHHHhhccc
Q 043341 546 TINKKIIDP 554 (758)
Q Consensus 546 ~~n~~~l~~ 554 (758)
...+. ++.
T Consensus 310 ~a~~~-~~r 317 (465)
T TIGR00435 310 AAKNA-LER 317 (465)
T ss_pred HHHHH-HHH
Confidence 88754 443
No 33
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.6e-27 Score=265.06 Aligned_cols=255 Identities=18% Similarity=0.274 Sum_probs=188.9
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCC----------Ccccc-------------hHHHHHHHH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDT----------NPAKE-------------SNEFVDNLL 305 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDt----------d~~r~-------------~~~~~~~i~ 305 (758)
.-|+|+.++||||+|+.+..+.++| +|...|+.+|+|+ |++.. ...|.+.+.
T Consensus 27 CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~ 106 (481)
T PRK14534 27 CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFF 106 (481)
T ss_pred CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3499999999999999988777776 6778999999999 65422 346889999
Q ss_pred HHHHHhCCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHh--cCc
Q 043341 306 KDIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMI--AGS 382 (758)
Q Consensus 306 ~dl~~LGi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~g~ 382 (758)
++++.|||.++ ..+.+|++++.+++++++|+++|+||....+ ..+...+..+|.... ++..++ |. .|
T Consensus 107 ~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~-vyFdv~~~~~YG~ls-~~~l~~-------l~~~~~- 176 (481)
T PRK14534 107 DDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGN-VYFDTSCFKSYGQMA-GINLND-------FKDMSV- 176 (481)
T ss_pred HHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCe-EEEecccccchhhhc-CCCHHH-------Hhhhcc-
Confidence 99999999988 4557899999999999999999999953211 111111122333222 233332 22 11
Q ss_pred cCCceeeEEeeecCCCCCCCCCCcEEEEeC---CCCCcccCCcc-cccccccccccc----------cccccCccEEeeC
Q 043341 383 ERGLECCLRGKLDMQDPNKSLRDPVYYRCN---PIPHHRIGSKY-KVYPTYDFACPF----------VDAKEGITHALRS 448 (758)
Q Consensus 383 ~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~---~~~~~~~~~~~-~~~PtY~~a~~v----------dD~~~githvirg 448 (758)
-| ++......+..||+|||.. .+.++.|.++| .|||+||++|++ |=|..|++++
T Consensus 177 -------~~--v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~Dli--- 244 (481)
T PRK14534 177 -------SR--VEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHI--- 244 (481)
T ss_pred -------Cc--CCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccC---
Confidence 11 2222345678999999964 34568899999 999999999984 3334444433
Q ss_pred CCCCCchHHHHHHHHH-hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHH
Q 043341 449 SEYHDRNAQYYRIQED-LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQF 526 (758)
Q Consensus 449 ~d~~~~~~~~~~l~~a-lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~ 526 (758)
-.|+.+...|. ++ .|.+.+.+|.| ++|.+.|+|||||.++ +.|+++|++.|++++++|.|
T Consensus 245 FPHHene~Aqs---~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~alR~~ 306 (481)
T PRK14534 245 GVHHINEIAIA---ECYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDFRYF 306 (481)
T ss_pred CCcchhHHHHH---hhhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHHHHH
Confidence 23444444444 44 47788899999 7999999999999974 55999999999999999999
Q ss_pred HHHhccccccccccHHHHHHHHH
Q 043341 527 ILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 527 ~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
+++. +++++.+|+++.|....+
T Consensus 307 lls~-~yr~~l~Fs~e~l~~a~~ 328 (481)
T PRK14534 307 CLTA-HYRTQLKFTFNNLKACKI 328 (481)
T ss_pred HHhC-CCCCCCCCCHHHHHHHHH
Confidence 8775 999999999999998753
No 34
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=4.4e-27 Score=263.00 Aligned_cols=260 Identities=16% Similarity=0.248 Sum_probs=191.1
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCC----------Ccccc-------------hHHHHHHHHH
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDT----------NPAKE-------------SNEFVDNLLK 306 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDt----------d~~r~-------------~~~~~~~i~~ 306 (758)
-|++++++||||+|+.+..+.++| .|...|+.+|+|+ |++.. ...|.+.+.+
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 499999999999999988777776 6778999999999 65432 3368899999
Q ss_pred HHHHhCCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCC
Q 043341 307 DIETLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERG 385 (758)
Q Consensus 307 dl~~LGi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~ 385 (758)
+++.|||.++ ..++.++|++.+++++++|+++|+||....+ -.+...+.+.|. ..++++.++ |..|.
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~-vyFdv~~~~~YG-~Ls~~~~~~-------l~~g~--- 177 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGN-VYFDIRTFPSYG-SLASAAVED-------LQAGA--- 177 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCe-EEEeCCcccchh-hhcCCCHHH-------hhcCC---
Confidence 9999999986 6688999999999999999999999953211 001111112222 223333333 33331
Q ss_pred ceeeEEeeecCCCCCCCCCCcEEEEeCC--CC-CcccCCcc-ccccccccccccc--ccccCccEEe-eCCCCC-CchHH
Q 043341 386 LECCLRGKLDMQDPNKSLRDPVYYRCNP--IP-HHRIGSKY-KVYPTYDFACPFV--DAKEGITHAL-RSSEYH-DRNAQ 457 (758)
Q Consensus 386 ~~~~~R~k~~~~~~~~~~~D~vl~R~~~--~~-~~~~~~~~-~~~PtY~~a~~vd--D~~~githvi-rg~d~~-~~~~~ 457 (758)
| ++....+.+..||+||+... .. .+.|.++| .|+|+||++|++. .++..-..+. -|.|++ .|...
T Consensus 178 -----~--v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHen 250 (490)
T PRK14536 178 -----R--IEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTN 250 (490)
T ss_pred -----c--CCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhh
Confidence 1 22223456779999998753 22 47899999 9999999999852 2222211111 155554 45555
Q ss_pred HHHHHHH-hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccc
Q 043341 458 YYRIQED-LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN 535 (758)
Q Consensus 458 ~~~l~~a-lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~ 535 (758)
..+..++ .|.+.+.+|.| ++|.+.|+|||||+++ +.|+++|++.|++++++|.|+++ .++++
T Consensus 251 eiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~~lls-~~yr~ 314 (490)
T PRK14536 251 EIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRFFLLG-GHYRS 314 (490)
T ss_pred HHHHHHHhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHHHHHh-CCCCC
Confidence 5555555 47777899999 7999999999999974 55999999999999999999988 59999
Q ss_pred cccccHHHHHHHHH
Q 043341 536 LNLMEWDKLWTINK 549 (758)
Q Consensus 536 ~~~~d~~~l~~~n~ 549 (758)
+.+|+++.|....+
T Consensus 315 ~l~Fs~e~l~~a~~ 328 (490)
T PRK14536 315 QLAFSWEALKTAKA 328 (490)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999988766
No 35
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.9e-27 Score=258.70 Aligned_cols=265 Identities=15% Similarity=0.150 Sum_probs=193.3
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCC-C
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGI-K 314 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi-~ 314 (758)
..|+|+|++||||+|+.+..+.++| .|...|+..++|.|.+.. .+.|.+.+.++++.||| .
T Consensus 15 CGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~ 94 (384)
T PRK12418 15 CGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLP 94 (384)
T ss_pred cCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4599999999999999988877777 577899999999986532 34688999999999997 6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCceeccCCc---hHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 315 YETVTYTSDYFPDLMEMAENLIRQGKAYVDDTP---REQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 315 ~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~---~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
+|..+++|++++.+++++++|+++|+||..... .-.++-.+.+.|. ...+...++ |..|.. -|
T Consensus 95 ~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG-~ls~~~~~~-------~~~~~~------~~ 160 (384)
T PRK12418 95 PRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFG-YESGYDRAT-------MLELFA------ER 160 (384)
T ss_pred CCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcc-cccCCCHHH-------HHhhhc------cc
Confidence 788999999999999999999999999965421 1112222222332 223344443 322100 01
Q ss_pred eeecC-CCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccCccEEee--CCCCC-CchHHHHHHHHH
Q 043341 392 GKLDM-QDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEGITHALR--SSEYH-DRNAQYYRIQED 464 (758)
Q Consensus 392 ~k~~~-~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~githvir--g~d~~-~~~~~~~~l~~a 464 (758)
. ++. ...+.+.+||+|||.....++.|.++| .|+|+||++|++. .++.. +-=|+ |.|++ .|....++..++
T Consensus 161 ~-~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~-~~DIH~GG~DL~FPHHeneiaq~~a 238 (384)
T PRK12418 161 G-GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGS-GFDIQGGGSDLIFPHHEFSAAHAEA 238 (384)
T ss_pred c-cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCC-CcccccCccccccchhHhHHHHHHH
Confidence 0 111 123567799999999877789999999 9999999999842 22211 11111 44544 455555555555
Q ss_pred -hCC-CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 465 -LGV-RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 465 -lg~-~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
.|- +.+.+|.| ++|.+.|+|||||+++ +.|++.+.+.|++++++|.|++ .++++++.+|++
T Consensus 239 ~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~ 302 (384)
T PRK12418 239 ATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTD 302 (384)
T ss_pred hcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEe-ccCCCCCcccCH
Confidence 455 56789999 7999999999999974 5589999999999999999998 469999999999
Q ss_pred HHHHHHHHh
Q 043341 542 DKLWTINKK 550 (758)
Q Consensus 542 ~~l~~~n~~ 550 (758)
+.|....+.
T Consensus 303 e~l~~a~~~ 311 (384)
T PRK12418 303 AVLAEAEAR 311 (384)
T ss_pred HHHHHHHHH
Confidence 999886553
No 36
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.94 E-value=1.1e-26 Score=262.54 Aligned_cols=266 Identities=17% Similarity=0.272 Sum_probs=196.7
Q ss_pred eeeec-cCCCCCCCccchhhHHHHHHHHHHcc-----cCceEEEEecCCCcccc-------------hHHHHHHHHHHHH
Q 043341 249 KVRLR-FAPEPSGYLHIGHSKAALLNQYFAQR-----YQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIE 309 (758)
Q Consensus 249 ~v~~R-faP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~ 309 (758)
+|... ..|+|+|++||||+|+.++.+.++|. |+..|+..++|+|++.. ..++.+.+.++++
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD 102 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45555 78999999999999999999988884 88999999999987532 4478999999999
Q ss_pred HhCC-CCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCcee
Q 043341 310 TLGI-KYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLEC 388 (758)
Q Consensus 310 ~LGi-~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 388 (758)
+||| .+|..+++|++.+.+++++++|+++|+||.+..+ -.+.-.+.+.|.. -.+.+.++ |..|
T Consensus 103 ~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~-Vyfdv~~~~~yg~-ls~~~~~~-------~~~~------- 166 (463)
T PRK00260 103 ALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGD-VYFDVRKFPDYGK-LSGRNLDE-------LQAG------- 166 (463)
T ss_pred HcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCe-EEEeccccccccc-CCCCCHHH-------Hhcc-------
Confidence 9999 5677788999999999999999999999954311 1111112223332 22333333 4333
Q ss_pred eEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc-cccccCccEEee--CCCCC-CchHHHHHHHH
Q 043341 389 CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF-VDAKEGITHALR--SSEYH-DRNAQYYRIQE 463 (758)
Q Consensus 389 ~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v-dD~~~githvir--g~d~~-~~~~~~~~l~~ 463 (758)
-| ++......+..||+|||.....++.|.++| .|+|+||+.|++ .....|.+-=|+ |.|++ .|....++.-.
T Consensus 167 -~~--~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~ 243 (463)
T PRK00260 167 -AR--VEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSE 243 (463)
T ss_pred -Cc--CCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHH
Confidence 12 233334567899999999877788999999 899999999943 333334332222 77744 44444554434
Q ss_pred H-hCCCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 464 D-LGVRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 464 a-lg~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
+ .|.+.+.+|.| +++.+.|+|||||+++ +.|++++++. ++++++|.|+++ +.++++..|++
T Consensus 244 a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~ 306 (463)
T PRK00260 244 AATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSE 306 (463)
T ss_pred HhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHh-CCCCCCCccCH
Confidence 4 57556678887 7999999999999974 4589999987 999999999997 58999999999
Q ss_pred HHHHHHHHh
Q 043341 542 DKLWTINKK 550 (758)
Q Consensus 542 ~~l~~~n~~ 550 (758)
+.|....+.
T Consensus 307 ~~l~~a~~~ 315 (463)
T PRK00260 307 EALEQAKKA 315 (463)
T ss_pred HHHHHHHHH
Confidence 988777554
No 37
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=2.5e-27 Score=258.72 Aligned_cols=265 Identities=16% Similarity=0.152 Sum_probs=196.3
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCC-
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIK- 314 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~- 314 (758)
..|+|++++||||+|+.+..++++| .|...|+.+++|+|.+.. .+.|.+.+.++++.|||.
T Consensus 42 CGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~ 121 (411)
T TIGR03447 42 CGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLP 121 (411)
T ss_pred eCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3599999999999999998888887 677899999999986532 346889999999999986
Q ss_pred CCCcccccCCHHHHHHHHHHHHHhCceeccCCc---hHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 315 YETVTYTSDYFPDLMEMAENLIRQGKAYVDDTP---REQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 315 ~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~---~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
+|..+++|++++.+.+++++|+++|+||..... .-.++-.+.+.|... .++..++ |..+. + -|
T Consensus 122 ~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~L-s~~~~~~-------~~~~~--~----~~ 187 (411)
T TIGR03447 122 PRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYE-SGYDRAT-------MLELF--A----ER 187 (411)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhccccc-cCCCHHH-------HHhhh--c----cc
Confidence 678999999999999999999999999964420 112222222333322 2344443 22210 0 00
Q ss_pred eeecCC-CCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc-ccccCccEEee--CCCCC-CchHHHHHHHHHh
Q 043341 392 GKLDMQ-DPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV-DAKEGITHALR--SSEYH-DRNAQYYRIQEDL 465 (758)
Q Consensus 392 ~k~~~~-~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd-D~~~githvir--g~d~~-~~~~~~~~l~~al 465 (758)
.++.. ..+.+.+||+|||.....++.|.++| .|+|+||++|++. ....|-+-=|+ |.|++ .|....++.-+|+
T Consensus 188 -~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~ 266 (411)
T TIGR03447 188 -GGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAA 266 (411)
T ss_pred -ccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHh
Confidence 01111 23567799999999877789999999 9999999999853 11222222233 66665 5666666655664
Q ss_pred -CC-CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHH
Q 043341 466 -GV-RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD 542 (758)
Q Consensus 466 -g~-~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~ 542 (758)
|- +.+.+|.| ++|.+.|+|||||+++ +.|++++.+.|++++++|.|+++ .+++++.+|+.+
T Consensus 267 ~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e 330 (411)
T TIGR03447 267 TGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDA 330 (411)
T ss_pred cCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHH
Confidence 65 57889999 7999999999999974 45899999999999999999985 599999999999
Q ss_pred HHHHHHH
Q 043341 543 KLWTINK 549 (758)
Q Consensus 543 ~l~~~n~ 549 (758)
.|....+
T Consensus 331 ~l~~a~~ 337 (411)
T TIGR03447 331 VLAEAEA 337 (411)
T ss_pred HHHHHHH
Confidence 9988643
No 38
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=1.5e-26 Score=261.90 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=189.2
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhCCCC
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLGIKY 315 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LGi~~ 315 (758)
.-|+|++++||||+|+++..+.++| +|...|+.+++|+|.+.. ...|.+.+.++++.|||.+
T Consensus 254 CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~ 333 (699)
T PRK14535 254 CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLR 333 (699)
T ss_pred cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3599999999999999998888777 677899999999996533 3468899999999999998
Q ss_pred C-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeee
Q 043341 316 E-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394 (758)
Q Consensus 316 d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~ 394 (758)
+ ..++.|++++.+.+++++|+++|+||......-.+.-.+.+.|.. ..+++.+ +|..|. | +
T Consensus 334 p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~-LS~~~~~-------~l~~g~--------r--v 395 (699)
T PRK14535 334 PDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQ-LSGKSLD-------DLRAGE--------R--V 395 (699)
T ss_pred CcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccccccc-ccCCChH-------HhcCCC--------c--c
Confidence 7 567889999999999999999999995321101111111222322 2223333 243331 1 2
Q ss_pred cCCCCCCCCCCcEEEEeCCCCCcccCCcc-cccccccccccc----------cccccCccEEeeCCCCCCchHHHHHHHH
Q 043341 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPF----------VDAKEGITHALRSSEYHDRNAQYYRIQE 463 (758)
Q Consensus 395 ~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~v----------dD~~~githvirg~d~~~~~~~~~~l~~ 463 (758)
+....+.+..||+|||.....++.|.++| .|+|+||++|++ |=|..|++++ -.||.|...|. +
T Consensus 396 e~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLi---FPHHENEiAQs---e 469 (699)
T PRK14535 396 EVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ---FPHHENEIAQS---V 469 (699)
T ss_pred ccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccC---CCCCccHHHHH---H
Confidence 22233567799999998877788999999 999999999985 3344444444 24555555554 4
Q ss_pred H-hCC----------------CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHH
Q 043341 464 D-LGV----------------RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQ 525 (758)
Q Consensus 464 a-lg~----------------~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~ 525 (758)
| .|. +..++|.| ++|.+.|+|||||+++ +.|++++++. ++++++|.
T Consensus 470 A~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpdalRl 533 (699)
T PRK14535 470 GATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPEVVRF 533 (699)
T ss_pred HhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHHHHHH
Confidence 4 343 13578988 8999999999999974 4589999987 99999999
Q ss_pred HHHHhccccccccccHHHHHHHHH
Q 043341 526 FILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 526 ~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
|+++ ++++++.+|+.+.|....+
T Consensus 534 ~lLs-shYRspL~fS~e~Le~Ak~ 556 (699)
T PRK14535 534 FILR-AHYRSPLNYSDAHLDDAKG 556 (699)
T ss_pred HHHc-CCCCCCCCcCHHHHHHHHH
Confidence 9998 5899999999998888653
No 39
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.9e-24 Score=230.00 Aligned_cols=248 Identities=17% Similarity=0.227 Sum_probs=181.6
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc------ccCceEEEEecCCCcccchH------------------HHHHHHHHHHH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ------RYQGQLIVRFDDTNPAKESN------------------EFVDNLLKDIE 309 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar------~~~G~~ilRieDtd~~r~~~------------------~~~~~i~~dl~ 309 (758)
-.|+.+..-||||||+.+--+.+.| +|+..|+++|+|+|++.... .|++.+.+||.
T Consensus 61 CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~ 140 (586)
T KOG2007|consen 61 CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMA 140 (586)
T ss_pred ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 3599999999999999987666665 68899999999999864331 26799999999
Q ss_pred HhCCCCC-CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCcee
Q 043341 310 TLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLEC 388 (758)
Q Consensus 310 ~LGi~~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~ 388 (758)
.|++-++ ..++.|+|++.+..+++++|++|.||+.+.+. .+...+...-.+++.... +.+.+| ++
T Consensus 141 ~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsV-YFdv~kf~~~YgKL~G~~--------~~~~~g-----Eg 206 (586)
T KOG2007|consen 141 ALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSV-YFDVDKFPHSYGKLVGQR--------KNLQEG-----EG 206 (586)
T ss_pred HhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcE-EEecccccchhhhhcCch--------hhcccC-----cC
Confidence 9999876 78899999999999999999999999764221 111111110012222100 112222 22
Q ss_pred eEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc----------ccccCccEEeeCCCCCCchHH
Q 043341 389 CLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV----------DAKEGITHALRSSEYHDRNAQ 457 (758)
Q Consensus 389 ~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd----------D~~~githvirg~d~~~~~~~ 457 (758)
.+- .+......||+|||..+..+|.|.++| +|+|+||++|++. -|-.||+.. -.|+.|...
T Consensus 207 ~l~-----ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~---FPHHeNEiA 278 (586)
T KOG2007|consen 207 VLS-----DSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLA---FPHHENEIA 278 (586)
T ss_pred ccc-----cccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCccccc---CCCcccHHH
Confidence 221 134556789999999999999999999 9999999999863 333333333 245666555
Q ss_pred HHHHHHHhCCC-cceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccc
Q 043341 458 YYRIQEDLGVR-KVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN 535 (758)
Q Consensus 458 ~~~l~~alg~~-~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~ 535 (758)
|-.. ++.-+ -..||.| |||.+.|.||||+.. ++.||+.+++. |+|.++|.||++. ..++
T Consensus 279 Q~eA--~~~~~~wVnYflHtGhL~i~g~KMSKSLk---------------NFiTIke~Lk~-~sp~qLRl~fl~~-~wr~ 339 (586)
T KOG2007|consen 279 QSEA--AFDDSQWVNYFLHTGHLTINGEKMSKSLK---------------NFITIKEALKK-YSPRQLRLAFLLH-QWRS 339 (586)
T ss_pred HHHH--HhcCCccceeEEEcCeeeeccchhhhhhc---------------cceeHHHHHHh-cCHHHHHHHHHHH-HhcC
Confidence 5422 23222 3578888 899999999999986 45699999999 9999999999987 8899
Q ss_pred cccccHH
Q 043341 536 LNLMEWD 542 (758)
Q Consensus 536 ~~~~d~~ 542 (758)
+.+|+-.
T Consensus 340 ~ldYs~s 346 (586)
T KOG2007|consen 340 PLDYSDS 346 (586)
T ss_pred cCCchHH
Confidence 9999877
No 40
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.91 E-value=8.9e-24 Score=245.65 Aligned_cols=266 Identities=14% Similarity=0.187 Sum_probs=186.1
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc------ccCceEEEEecCCCcccc--------------hHHHHHHHHHHHHHhCCC
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ------RYQGQLIVRFDDTNPAKE--------------SNEFVDNLLKDIETLGIK 314 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar------~~~G~~ilRieDtd~~r~--------------~~~~~~~i~~dl~~LGi~ 314 (758)
-|+++++.||||||+.++.+.++| +|...|+.+|+|+|.+.. ...|++.+.+|++.|||.
T Consensus 67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~ 146 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR 146 (651)
T ss_pred CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 499999999999999988777766 466799999999997532 236889999999999999
Q ss_pred CC-CcccccCCHHHHHHHHHHHHHhCceeccCCch----HHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceee
Q 043341 315 YE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPR----EQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECC 389 (758)
Q Consensus 315 ~d-~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~----e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (758)
++ .+++.|+|++.+.+++++|+++|+||....+. ..+... ...|.. ++++.. .....|..|.. .
T Consensus 147 ~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~-~~~Yg~----L~p~~~-~~~~~~~~g~~-----~ 215 (651)
T PTZ00399 147 PPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKA-GHVYPK----LEPESV-ADEDRIAEGEG-----A 215 (651)
T ss_pred CCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccc-hhhHHh----hChhhc-CCHHHHhcccC-----C
Confidence 76 67888999999999999999999999643211 111110 001111 111100 00111222210 0
Q ss_pred EEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcc-ccccccccccccc--ccccCccEEee-CCCCC-CchHHHHHHHHH
Q 043341 390 LRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKY-KVYPTYDFACPFV--DAKEGITHALR-SSEYH-DRNAQYYRIQED 464 (758)
Q Consensus 390 ~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~-~~~PtY~~a~~vd--D~~~githvir-g~d~~-~~~~~~~~l~~a 464 (758)
+. +......+..||+||+...+.+|.|.++| .|+|+||++|++. |++..--.+.. |.|+. .|....++..+|
T Consensus 216 l~---~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA 292 (651)
T PTZ00399 216 LG---KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEA 292 (651)
T ss_pred cc---ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHH
Confidence 10 11123456689999999888889999999 9999999988753 33322111111 44442 343444444444
Q ss_pred h-CC-CcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 465 L-GV-RKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 465 l-g~-~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
+ |- +.+.+|.| +||++.|.|||||+++ +.|++++++. |+++++|.||++. ..+++.+|++
T Consensus 293 ~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~-~~~~dldFS~ 355 (651)
T PTZ00399 293 YFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLH-KWDKPMNYSD 355 (651)
T ss_pred hhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhc-CCCCCCccCH
Confidence 3 54 45788999 9999999999999974 5599999998 9999999999975 9999999999
Q ss_pred HHHHHHHHhh
Q 043341 542 DKLWTINKKI 551 (758)
Q Consensus 542 ~~l~~~n~~~ 551 (758)
+.+....+..
T Consensus 356 e~l~~a~~~~ 365 (651)
T PTZ00399 356 ESMDEAIEKD 365 (651)
T ss_pred HHHHHHHHHH
Confidence 9987775543
No 41
>PLN02473 glutathione S-transferase
Probab=99.89 E-value=2.2e-22 Score=205.72 Aligned_cols=160 Identities=16% Similarity=0.263 Sum_probs=133.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|.|+|| +++.|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++.
T Consensus 1 ~~~kLy--~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 1 MVVKVY--GQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED-GDLKLFESRAIARYYATK 77 (214)
T ss_pred CceEEe--cCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE-CCEEEEehHHHHHHHHHH
Confidence 568999 888899999999999999999987532 99999987 889999999999999999
Q ss_pred C-----CCCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcc
Q 043341 99 G-----NFYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFV 145 (758)
Q Consensus 99 ~-----~L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~fl 145 (758)
+ .|+|.++.+++++++|+.+....+.+ ..+.+.++.||+.|++++|+
T Consensus 78 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 157 (214)
T PLN02473 78 YADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYL 157 (214)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 7 48999999999999998765443310 34566788999999988999
Q ss_pred cCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 146 VGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 146 vG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+++|+||+++++.+.+...........+.+|+|.+|+++|.++ |++++++..
T Consensus 158 ~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~--p~~~~~~~~ 211 (214)
T PLN02473 158 GGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISAR--PAWKKLMEL 211 (214)
T ss_pred cCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcC--hhhHHHHHH
Confidence 999999999999999876522111112257899999999999999 999999865
No 42
>PLN02395 glutathione S-transferase
Probab=99.88 E-value=7.1e-22 Score=202.02 Aligned_cols=162 Identities=18% Similarity=0.307 Sum_probs=132.8
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+++|| + ..+++++++++++.++|++|+.+.+ |+||+|++ +|.+|+||.||++||++.
T Consensus 1 ~~~~ly--~-~~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~-~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MVLKVY--G-PAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD-GDYKIFESRAIMRYYAEK 76 (215)
T ss_pred CeEEEE--c-CCcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE-CCEEEEcHHHHHHHHHHH
Confidence 678888 5 5677899999999999999987532 99999987 778999999999999998
Q ss_pred C-----CCCCCCHHHHHHHHHHHHhccccCCh----------------------------HHHHHHHHHHHHhcccCCcc
Q 043341 99 G-----NFYGQNAYEAGEIDEWLDYTPVFSSG----------------------------SEFENACTYVDKYLERRTFV 145 (758)
Q Consensus 99 ~-----~L~p~~~~era~v~~wl~~~~~~l~~----------------------------~~l~~~L~~Le~~L~~~~fl 145 (758)
+ .|+|.++.+++++++|+.|....+.+ ..+.+.++.||.+|+.++|+
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 7 38999999999999999875433210 34566788999999988999
Q ss_pred cCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhhhc
Q 043341 146 VGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVS 204 (758)
Q Consensus 146 vG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~~~ 204 (758)
+|+++|+||+++++.+.++............+|+|.+|++++.++ |++++++..+..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~r--p~~k~~~~~~~~ 213 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSR--PAWKEVLAKYSL 213 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcC--hHHHHHHHHhcC
Confidence 999999999999998876522111122356799999999999999 999999988753
No 43
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.88 E-value=5.1e-22 Score=202.71 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=132.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| +++.|+++++++++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++ .
T Consensus 11 ~~Ly--~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~-~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 11 MTLF--SGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVD-RELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred eEEe--CCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEE-CCEEeeCHHHHHHHHHHhCCCCC
Confidence 7999 888899999999999999999998654 99999987 8899999999999999998 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC----------h-------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS----------G-------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~----------~-------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
|+|.++.+|+++++|+.+....+. + ..+...+..||++|++++|++|+++|+||+++++.+.+
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~ 167 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWR 167 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHH
Confidence 999999999999999876543211 0 45677789999999999999999999999999999877
Q ss_pred hhcccccccc-cccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 164 TGQRWDSLRK-SKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 164 l~~~~~~~~~-~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.. .+.+. ...+|+|.+|+++|.++ |++++++..
T Consensus 168 ~~~--~~~~~~~~~~p~l~~w~~~~~~r--p~~~~~~~~ 202 (211)
T PRK09481 168 LPV--LGIELSGPGAKELKGYMTRVFER--DSFLASLTE 202 (211)
T ss_pred HHh--cCCCCCCCCChhHHHHHHHHhcc--HHHHHHcCH
Confidence 522 22222 25799999999999999 999988654
No 44
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.88 E-value=1e-21 Score=201.11 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=128.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEe----CCC--cEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSF----SNG--SKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~----~~g--~~l~ES~aIl~y 94 (758)
|+|| +. .++++++|+++|+++|++|+.+.+ |+||+|++ +|| .+|+||.||++|
T Consensus 2 ~~Ly--~~-~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~Y 78 (215)
T PRK13972 2 IDLY--FA-PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY 78 (215)
T ss_pred eEEE--EC-CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHH
Confidence 6888 54 589999999999999999987432 99999997 356 479999999999
Q ss_pred HHHhC-CCCCCCHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcccCCcccCCC
Q 043341 95 IGRVG-NFYGQNAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLERRTFVVGHS 149 (758)
Q Consensus 95 L~~~~-~L~p~~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~~~flvG~~ 149 (758)
|++.+ .++|.++.+|+++++|+.|..+.+.+ ..+...+..||.+|.+++|++|++
T Consensus 79 L~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 158 (215)
T PRK13972 79 LAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGEN 158 (215)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCC
Confidence 99998 56788899999999999886543221 346678899999999899999999
Q ss_pred CCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 150 LSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 150 lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+|+|||++++.+..... .... ...||+|.+|+++|.++ |+|++++.+
T Consensus 159 ~t~ADi~l~~~~~~~~~--~~~~-~~~~P~l~~w~~r~~~r--p~~~~~~~~ 205 (215)
T PRK13972 159 YSIADIACWPWVNAWTR--QRID-LAMYPAVKNWHERIRSR--PATGQALLK 205 (215)
T ss_pred CCHHHHHHHHHHHHHhh--cCCc-chhCHHHHHHHHHHHhC--HHHHHHHHH
Confidence 99999999887744311 1222 57899999999999999 999998765
No 45
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.87 E-value=4.6e-22 Score=202.87 Aligned_cols=179 Identities=21% Similarity=0.256 Sum_probs=144.0
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcc------------cchHHHHHHHHHHHHHhCCCCC
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPA------------KESNEFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~------------r~~~~~~~~i~~dl~~LGi~~d 316 (758)
.+|||+|+|||||+|++++.+.+|| +|...++--++|.+.+ .....+.+.+.+++++|||.+|
T Consensus 7 ~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d 86 (212)
T cd00671 7 VSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFD 86 (212)
T ss_pred cCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence 4799999999999999999888888 3444555556777653 2344677999999999999999
Q ss_pred CcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecC
Q 043341 317 TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM 396 (758)
Q Consensus 317 ~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~ 396 (758)
..+++|++.+.+.+++++|+++|.+|... + .+.+.++
T Consensus 87 ~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g--~~~~~~~- 123 (212)
T cd00671 87 VWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------G--ALWLDLT- 123 (212)
T ss_pred eecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------C--cEEEech-
Confidence 98899999999999999999999999321 1 1222221
Q ss_pred CCCCCCCCCcEEEEeCCCCCcccCCccccccccc---ccccccccccCccEE--eeCCCCCCchHHHHHHHHHhCCC-cc
Q 043341 397 QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYD---FACPFVDAKEGITHA--LRSSEYHDRNAQYYRIQEDLGVR-KV 470 (758)
Q Consensus 397 ~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~---~a~~vdD~~~githv--irg~d~~~~~~~~~~l~~alg~~-~p 470 (758)
......|+|+.|+||+ |+|+ +|++++++.+++|++ |+|.||..+.+++..++++||+. .+
T Consensus 124 --~~~~~~d~vl~rsdG~------------~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~~~~ 189 (212)
T cd00671 124 --EFGDDKDRVLVRSDGT------------YTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGYDEAK 189 (212)
T ss_pred --hhCCCCCeEEEECCCC------------ccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCCCCCC
Confidence 1234579999999977 8886 799999999999999 89999999999999999999986 44
Q ss_pred eE--eeeeeeecc-cccccchh
Q 043341 471 HI--YEFSRLNMV-YTLLSKRK 489 (758)
Q Consensus 471 ~~--~~~~~l~~~-~~klSKR~ 489 (758)
.+ ..|+++.+. |.|||||+
T Consensus 190 ~~~h~~~~~v~~~~~~kmS~R~ 211 (212)
T cd00671 190 KLEHLLYGMVNLPKEGKMSTRA 211 (212)
T ss_pred CeEEEEEEeEEcCCCCCCCCCC
Confidence 33 334677777 88999997
No 46
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.86 E-value=3.1e-21 Score=195.09 Aligned_cols=155 Identities=15% Similarity=0.302 Sum_probs=129.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +.. ++++++++++|+++|++|+.+.+ |+||+|+++||.+|+||.||++||++.+
T Consensus 1 m~l~--~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLF--YKP-GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred Ccee--ecc-cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhC
Confidence 4777 554 56899999999999999987421 9999999878999999999999999998
Q ss_pred ---CCC-CCCHHHHHHHHHHHHhccccCCh-------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 100 ---NFY-GQNAYEAGEIDEWLDYTPVFSSG-------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 100 ---~L~-p~~~~era~v~~wl~~~~~~l~~-------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
.++ |.++.+|+++++|+.++.+.+.+ ..+...++.||+.|+.++||+|+++|+|||+
T Consensus 78 ~~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 78 PDRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAY 157 (201)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHH
Confidence 455 66788999999999877544331 4567788999999998999999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+++.+.+... .+.. ...+|+|.+|+++|.++ |+|++++..
T Consensus 158 l~~~~~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~k~~~~~ 197 (201)
T PRK10542 158 LFTVLRWAYA--VKLN-LEGLEHIAAYMQRVAER--PAVAAALKA 197 (201)
T ss_pred HHHHHHHhhc--cCCC-cccchHHHHHHHHHHcC--HHHHHHHHH
Confidence 9999887632 2222 46799999999999999 999999865
No 47
>PRK11752 putative S-transferase; Provisional
Probab=99.86 E-value=9.4e-21 Score=199.80 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=129.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhc------CCCeeeeec------------------CCccEEEeCCC---cEEechHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLA------GITIPTETS------------------GSAPTFSFSNG---SKLQGTYVL 91 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~------gl~~~~~~~------------------g~vP~L~~~~g---~~l~ES~aI 91 (758)
|+|| +. .|+++++|+++|+++ |++|+.+.+ |+||+|++++| .+|+||.||
T Consensus 45 ~~Ly--~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 45 LQLY--SL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred eEEe--cC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHH
Confidence 8998 54 699999999999997 888976432 99999998653 699999999
Q ss_pred HHHHHHhC-CCCCCCHHHHHHHHHHHHhccccCC-------------h-----------HHHHHHHHHHHHhcccCCccc
Q 043341 92 LRYIGRVG-NFYGQNAYEAGEIDEWLDYTPVFSS-------------G-----------SEFENACTYVDKYLERRTFVV 146 (758)
Q Consensus 92 l~yL~~~~-~L~p~~~~era~v~~wl~~~~~~l~-------------~-----------~~l~~~L~~Le~~L~~~~flv 146 (758)
++||++.+ +|+|.++.+|+++++|+.|....+. + ..+.+.|+.||++|+.++||+
T Consensus 122 l~YL~~~~~~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~ 201 (264)
T PRK11752 122 LLYLAEKFGAFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIA 201 (264)
T ss_pred HHHHHHhcCCcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 99999999 7999999999999999988654310 1 245678899999999889999
Q ss_pred CCCCCHhHHHHHHHHhhhhccc----ccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 147 GHSLSIVDIAIWSALAGTGQRW----DSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 147 G~~lTlADi~l~~~L~~l~~~~----~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
|+++|+|||++++.+.++.... ........||+|.+|+++|.++ |+|++++..
T Consensus 202 Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~r--Ps~k~~~~~ 258 (264)
T PRK11752 202 GDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAER--PAVKRGRIV 258 (264)
T ss_pred CCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhC--HHHHHHHhc
Confidence 9999999999998886652210 1111246899999999999999 999998653
No 48
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.85 E-value=1e-20 Score=191.70 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=129.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC---C
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---N 100 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~ 100 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |++|+|++++|.+|+||.||++||++.+ .
T Consensus 1 ~~Ly--~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~ 78 (202)
T PRK10357 1 MKLI--GSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPA 78 (202)
T ss_pred Ceee--cCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCC
Confidence 5788 888999999999999999999997432 9999999778999999999999999988 5
Q ss_pred CCCCCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 101 FYGQNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 101 L~p~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
|+|.++.+++++++|+.|....+. ...+...|+.||++|.+++ ++|+++|+|||+
T Consensus 79 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~ 157 (202)
T PRK10357 79 MLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIA 157 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHH
Confidence 899999999999999877643321 1356777899999998878 999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
+++.+.++............+|+|.+|+++|.++ |+|+++
T Consensus 158 l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~r--p~~~~~ 197 (202)
T PRK10357 158 IACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQR--ESFART 197 (202)
T ss_pred HHHHHHHHHhcccCcchhhcChHHHHHHHHHhcC--hhhhhc
Confidence 9999887522111222246799999999999999 999875
No 49
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=4.9e-21 Score=219.61 Aligned_cols=233 Identities=17% Similarity=0.218 Sum_probs=171.1
Q ss_pred cCeeeecc-CCCCCCCccchhhHHHHHHHHHHcc--cCc---eEEEEecCCCcc-------------cchHHHHHHHHHH
Q 043341 247 IGKVRLRF-APEPSGYLHIGHSKAALLNQYFAQR--YQG---QLIVRFDDTNPA-------------KESNEFVDNLLKD 307 (758)
Q Consensus 247 ~~~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar~--~~G---~~ilRieDtd~~-------------r~~~~~~~~i~~d 307 (758)
..+|+.-| +|||||+|||||+|++++++.+||- +.| .++.-++|.+.+ ...+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777 9999999999999999999999983 345 455556888743 3456788999999
Q ss_pred HHHhCCCCCCcccccCC--HHHHHHHHHHHHHhCcee-ccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccC
Q 043341 308 IETLGIKYETVTYTSDY--FPDLMEMAENLIRQGKAY-VDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSER 384 (758)
Q Consensus 308 l~~LGi~~d~~~~~S~~--~~~~~~~~~~Li~~G~aY-~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~ 384 (758)
|++|||.+|.++++|+. .+.+.+++++|.++|.+| ...
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~--------------------------------------- 230 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESD--------------------------------------- 230 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeC---------------------------------------
Confidence 99999999977777764 357899999999999999 311
Q ss_pred CceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEE--eeCCCCCCchHHHHHHH
Q 043341 385 GLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHA--LRSSEYHDRNAQYYRIQ 462 (758)
Q Consensus 385 ~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githv--irg~d~~~~~~~~~~l~ 462 (758)
+.+.++++. .++..|+||+|+||++.+.+. |+|+..+.+.. .+++ |.|.||..|..++..++
T Consensus 231 ---Ga~~~~~~~---~~~~~~~vl~ksdG~~~Y~t~---------Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~~~ 294 (507)
T PRK01611 231 ---GALWVRLTE---FGDDKDRVLIKSDGTYTYFTR---------DIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAAL 294 (507)
T ss_pred ---CcEEEEchh---hCCCCCeEEEECCCCccchHH---------HHHHHHHHHhh-cCEEEEEECCChHHHHHHHHHHH
Confidence 122333321 122358999999988433222 45555554444 5566 56999999999999999
Q ss_pred HHhCCCcc--eEeee---eeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCH----------------
Q 043341 463 EDLGVRKV--HIYEF---SRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLV---------------- 520 (758)
Q Consensus 463 ~alg~~~p--~~~~~---~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~---------------- 520 (758)
++||+..+ .++.| +++.- .|.|||||+++ ..++.+|++.++..
T Consensus 295 ~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~~a~~vgi 359 (507)
T PRK01611 295 KALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKEIAEAVGI 359 (507)
T ss_pred HHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 99998744 32444 33322 35699999963 34677777775666
Q ss_pred HHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 521 EALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 521 eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
+|+|+|+++. ...++..|||+++.+.+++
T Consensus 360 dAiR~~~L~~-~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 360 DAVRYFDLSR-SRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred ceeEehhhhc-CCCCCCccCHHHHHhhcCC
Confidence 8999999876 7788999999999888754
No 50
>PRK15113 glutathione S-transferase; Provisional
Probab=99.84 E-value=3.9e-20 Score=189.23 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=127.8
Q ss_pred eEEEecccC--CCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFP--ADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~--~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +.. .|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++.
T Consensus 6 ~~Ly--~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~-~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 6 ITLY--SDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH-DDFELSESSAIAEYLEER 82 (214)
T ss_pred EEEE--eCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE-CCEEEecHHHHHHHHHHH
Confidence 7898 654 689999999999999999987542 99999997 789999999999999999
Q ss_pred C---C---CCCCCHHHHHHHHHHHHhccccCC------------------------hHHHHHHHHHHHHhccc-CCcccC
Q 043341 99 G---N---FYGQNAYEAGEIDEWLDYTPVFSS------------------------GSEFENACTYVDKYLER-RTFVVG 147 (758)
Q Consensus 99 ~---~---L~p~~~~era~v~~wl~~~~~~l~------------------------~~~l~~~L~~Le~~L~~-~~flvG 147 (758)
+ . |+|.++.+++++++|+.|..+.+. .+.+.+.++.||++|+. ..|++|
T Consensus 83 ~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G 162 (214)
T PRK15113 83 FAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFG 162 (214)
T ss_pred cCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeC
Confidence 8 3 999999999999999987753221 15567888999999975 479999
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+ +|+|||++++.+.++.. .+.. . .|+|.+|+++|.++ |+|++++++-
T Consensus 163 ~-~TlADi~l~~~l~~~~~--~~~~-~--~p~l~~~~~r~~~r--p~~~~~~~~~ 209 (214)
T PRK15113 163 E-WCIADTDLALMLNRLVL--HGDE-V--PERLADYATFQWQR--ASVQRWLALS 209 (214)
T ss_pred C-ccHHHHHHHHHHHHHHH--cCCC-C--CHHHHHHHHHHhcC--HHHHHHHHHh
Confidence 6 99999999999887522 2222 2 29999999999999 9999998764
No 51
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.83 E-value=7.3e-20 Score=186.41 Aligned_cols=154 Identities=15% Similarity=0.199 Sum_probs=129.1
Q ss_pred EEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 41 IKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 41 L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|| ++..|+++++++++|.++|++|+.+.+ |++|+|++ ||.+|+||.+|++||++.+
T Consensus 2 Ly--~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 2 LY--SYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI-DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred cc--cCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE-CCEEeecHHHHHHHHHHhCCC
Confidence 55 678899999999999999999886311 99999997 8899999999999999998
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhccc--CCcccCCCC
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLER--RTFVVGHSL 150 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~--~~flvG~~l 150 (758)
.|+|.++.+++++++|+.+....+.+ +.+.+.|+.||++|+. ++||+|+++
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCC
Confidence 59999999999999998876543210 2466788999999986 359999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
|+||+++++.+.++.. .... ...||+|.+|+++|.++ |++++++...
T Consensus 159 T~ADi~~~~~l~~~~~--~~~~-~~~~p~l~~~~~~~~~r--p~~~~~~~~~ 205 (210)
T TIGR01262 159 TLADLCLVPQVYNAER--FGVD-LTPYPTLRRIAAALAAL--PAFQRAHPEN 205 (210)
T ss_pred CHHHHHHHHHHHHHHH--cCCC-cccchHHHHHHHHHhcC--HHHHHhCccc
Confidence 9999999999987532 2222 46899999999999999 9999987653
No 52
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.1e-20 Score=183.28 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=135.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC---
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--- 99 (758)
.+|| ++..||+++|++|+|+++||+|+.+.. ++||+|++ +|..|.||+.|++||++.+
T Consensus 10 vrL~--~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~H-n~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLL--GMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEH-NGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEE--EeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEE-CCceehhhHHHHHHHHhhccCC
Confidence 5788 999999999999999999999998654 99999999 8888999999999999998
Q ss_pred -CCCCCCHHHHHHHHHHHHhccccCCh------------------HHHHHHHHHHHHhcc-cCCcccCCCCCHhHHHHHH
Q 043341 100 -NFYGQNAYEAGEIDEWLDYTPVFSSG------------------SEFENACTYVDKYLE-RRTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 100 -~L~p~~~~era~v~~wl~~~~~~l~~------------------~~l~~~L~~Le~~L~-~~~flvG~~lTlADi~l~~ 159 (758)
+++|+||.+||+.+.|+++.+..+.. +++...|..||+.|. +.+|+.|+++++.||++++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p 166 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGP 166 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHh
Confidence 79999999999999999999864331 458889999999999 8899999999999999997
Q ss_pred HHhhhhcccc-----cccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 160 ALAGTGQRWD-----SLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 160 ~L~~l~~~~~-----~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
.+.+...... .......+|+|.+|.++|.++ +++++++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~--~~V~~~~p~ 211 (231)
T KOG0406|consen 167 SFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKED--EAVKAVLPD 211 (231)
T ss_pred hHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcC--hhHHhhcCC
Confidence 7666422211 122356899999999999999 999887654
No 53
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-19 Score=184.27 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=128.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC--
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-- 99 (758)
|+|| +...|++++++++++.++|++|+.+.+ |+||+|+++||.+|+||.||++||++.+
T Consensus 1 ~~L~--~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 1 MKLY--GSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPG 78 (211)
T ss_pred Ceee--cCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCC
Confidence 5788 888889999999999999999998643 9999999977779999999999999999
Q ss_pred C-CCCCCHH---HHHHHHHHHHhccccCCh-------------------------HHHHHHHHHHHHhcccCCcccCCCC
Q 043341 100 N-FYGQNAY---EAGEIDEWLDYTPVFSSG-------------------------SEFENACTYVDKYLERRTFVVGHSL 150 (758)
Q Consensus 100 ~-L~p~~~~---era~v~~wl~~~~~~l~~-------------------------~~l~~~L~~Le~~L~~~~flvG~~l 150 (758)
. |+|.++. +|+++.+|+.|..+.+.+ ..+...+..+|..|+.++|++|+++
T Consensus 79 ~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 158 (211)
T COG0625 79 PPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRF 158 (211)
T ss_pred CCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 3 9998885 899999999988655442 3456778899999999999999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHH
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLD 196 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~ 196 (758)
|+||+++++.+.++... +.. ...+|++.+|+++|.++ |+++
T Consensus 159 tiAD~~~~~~~~~~~~~--~~~-~~~~p~l~~w~~r~~~r--p~~~ 199 (211)
T COG0625 159 TIADIALAPLLWRLALL--GEE-LADYPALKAWYERVLAR--PAFR 199 (211)
T ss_pred CHHHHHHHHHHHHhhhc--Ccc-cccChHHHHHHHHHHcC--Cchh
Confidence 99999999999985222 221 26799999999999999 9865
No 54
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-19 Score=185.27 Aligned_cols=161 Identities=19% Similarity=0.428 Sum_probs=140.4
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|.|+|| ++..+++++++.++++++|++|+...+ |+||+|++ +|..|+||.||+.||+++
T Consensus 1 ~~~~ly--~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d-~~~~l~eS~AI~~Yl~~k 77 (226)
T KOG0867|consen 1 MKLKLY--GHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED-GGLTLWESHAILRYLAEK 77 (226)
T ss_pred CCceEe--ecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec-CCeEEeeHHHHHHHHHHH
Confidence 558999 999999999999999999999998743 99999998 799999999999999998
Q ss_pred C----C-CCCCCHHHHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccC
Q 043341 99 G----N-FYGQNAYEAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVG 147 (758)
Q Consensus 99 ~----~-L~p~~~~era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG 147 (758)
| . |+|.++.+|+.+++|+.|..+.+.+ ..+..+++.+|.+|.++.|++|
T Consensus 78 y~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g 157 (226)
T KOG0867|consen 78 YGPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAG 157 (226)
T ss_pred cCCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccC
Confidence 7 3 9999999999999999987776542 6778899999999999999999
Q ss_pred CCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 148 ~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+++|+||+.+.+.+..+...........++|++.+|++++.++ |++++.....
T Consensus 158 ~~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~--P~~~e~~~~~ 210 (226)
T KOG0867|consen 158 DQLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKR--PAYEEANEKG 210 (226)
T ss_pred CcccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhC--ccHHHHHHHH
Confidence 9999999999999998632222233468899999999999999 9988876654
No 55
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.8e-20 Score=170.93 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=136.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
..|| ++..|+|+.|||++|+++|++|+...+ ++||+|++ ||.+|+||.||++||++.+
T Consensus 6 piLY--SYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i-~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 6 PILY--SYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI-DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred chhh--hhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE-CCEEeehHHHHHHHHHhcC
Confidence 4678 889999999999999999999998654 89999999 9999999999999999999
Q ss_pred ---CCCCCCHHHHHHHHHHHHhccccCCh-----------------------HHHHHHHHHHHHhccc--CCcccCCCCC
Q 043341 100 ---NFYGQNAYEAGEIDEWLDYTPVFSSG-----------------------SEFENACTYVDKYLER--RTFVVGHSLS 151 (758)
Q Consensus 100 ---~L~p~~~~era~v~~wl~~~~~~l~~-----------------------~~l~~~L~~Le~~L~~--~~flvG~~lT 151 (758)
+|+|.++..||.+++......+.+.+ .-+.+.+..||..|+. ..|.+|+++|
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevt 162 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVT 162 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceee
Confidence 79999999999999999988888774 3456788999999975 4899999999
Q ss_pred HhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 152 IVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 152 lADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+||+++.+.++.. ....++ +..||-+.|..+.+.+. |+|+.++.+
T Consensus 163 iADl~L~pqv~nA--~rf~vd-l~PYPti~ri~e~l~el--paFq~ahP~ 207 (217)
T KOG0868|consen 163 IADLCLPPQVYNA--NRFHVD-LTPYPTITRINEELAEL--PAFQAAHPD 207 (217)
T ss_pred hhhhccchhhhhh--hhcccc-CCcCchHHHHHHHHHhC--HHHHhcCCC
Confidence 9999999999874 333443 77899999999999999 999887644
No 56
>PRK10387 glutaredoxin 2; Provisional
Probab=99.79 E-value=8.7e-19 Score=178.47 Aligned_cols=146 Identities=14% Similarity=0.176 Sum_probs=116.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFY 102 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~ 102 (758)
|+|| ++..|+++.+|+++|+++|++|+.+.+ |+||+|+.+||.+|+||.||++||++++ +++
T Consensus 1 ~~Ly--~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLY--IYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEE--eCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 5898 888999999999999999999998543 7999997668999999999999999998 455
Q ss_pred CCCHHHHHHHHHHHHhccccCC---------------------------------------------hHHHHHHHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSS---------------------------------------------GSEFENACTYVDK 137 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~---------------------------------------------~~~l~~~L~~Le~ 137 (758)
+. .+++.+++|+.+....+. .+.+...|+.||+
T Consensus 79 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 156 (210)
T PRK10387 79 TG--KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDP 156 (210)
T ss_pred CC--cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 41 257788888765432111 0245567799999
Q ss_pred hcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 138 YLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 138 ~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
+|++ +|++|+++|+||+++++.+.++.. ... ...+|+|.+|+++|.++ |++
T Consensus 157 ~L~~-~~l~G~~~s~ADi~l~~~l~~~~~-~~~---~~~~p~l~~w~~r~~~r--~~~ 207 (210)
T PRK10387 157 LIVK-PNAVNGELSTDDIHLFPILRNLTL-VKG---IEWPPRVADYRDNMSKK--TQV 207 (210)
T ss_pred HhcC-ccccCCCCCHHHHHHHHHHhccee-ecC---CCCCHHHHHHHHHHHHH--hCC
Confidence 9986 999999999999999999998632 122 23469999999999999 764
No 57
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.79 E-value=1.7e-18 Score=175.91 Aligned_cols=154 Identities=14% Similarity=0.213 Sum_probs=122.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeee------------------ec---CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTE------------------TS---GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~------------------~~---g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
++|| +++.++++.+++++|+++|++|+.+ .. |++|+|++ ||.+|+||.||++||++
T Consensus 5 ~~L~--y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~-~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 5 IVLY--YFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEM-DNIIFAQSQAIVRYLSK 81 (205)
T ss_pred eEEE--ecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEE-CCEEEecHHHHHHHHHH
Confidence 6888 8889999999999999999999762 12 99999998 78999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhccc-cC-----------------ChHHHHHHHHHHHHhcccC--CcccCCCCCHhHHHH
Q 043341 98 VGNFYGQNAYEAGEIDEWLDYTPV-FS-----------------SGSEFENACTYVDKYLERR--TFVVGHSLSIVDIAI 157 (758)
Q Consensus 98 ~~~L~p~~~~era~v~~wl~~~~~-~l-----------------~~~~l~~~L~~Le~~L~~~--~flvG~~lTlADi~l 157 (758)
++++.|.+..+++.+ |+.+... .+ ..+.+.+.+..||+.|+.+ +|++|+++|+||+++
T Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l 159 (205)
T PTZ00057 82 KYKICGESELNEFYA--DMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAV 159 (205)
T ss_pred HcCCCCCCHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHH
Confidence 997777665555444 3222211 00 0156677889999999764 799999999999999
Q ss_pred HHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 158 ~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++.+.++... ... .+..||+|.+|+++|.++ |++++++++
T Consensus 160 ~~~~~~~~~~-~~~-~l~~~P~l~~~~~r~~~~--P~~k~y~~~ 199 (205)
T PTZ00057 160 FNLYDDIETK-YPN-SLKNFPLLKAHNEFISNL--PNIKNYISN 199 (205)
T ss_pred HHHHHHHHHh-Chh-hhccChhHHHHHHHHHhC--hHHHHHHHh
Confidence 9988775211 222 257899999999999999 999999865
No 58
>PLN02378 glutathione S-transferase DHAR1
Probab=99.74 E-value=1e-17 Score=171.21 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=117.8
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC-CCCCCCHHHH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-NFYGQNAYEA 109 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~L~p~~~~er 109 (758)
+..|+++++|+++|+++|++|+.+.+ |+||+|++ ||.+|+||.||++||++++ .-...++.++
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~-~~~~l~ES~aI~~YL~~~~~~~~l~~~~~~ 95 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKI-DDKWVTDSDVIVGILEEKYPDPPLKTPAEF 95 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEE-CCEEecCHHHHHHHHHHhCCCCCCCCHHHH
Confidence 45699999999999999999997654 99999987 7789999999999999998 2111467788
Q ss_pred HHHHHHHHhccccC------C---hHHHHHHHHHHHHhcc--cCCcccCCCCCHhHHHHHHHHhhhhccc---ccccccc
Q 043341 110 GEIDEWLDYTPVFS------S---GSEFENACTYVDKYLE--RRTFVVGHSLSIVDIAIWSALAGTGQRW---DSLRKSK 175 (758)
Q Consensus 110 a~v~~wl~~~~~~l------~---~~~l~~~L~~Le~~L~--~~~flvG~~lTlADi~l~~~L~~l~~~~---~~~~~~~ 175 (758)
+++++++......+ . ...+.+.|..||++|+ +++|++|+++|+||+++++.+.++.... .......
T Consensus 96 a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~ 175 (213)
T PLN02378 96 ASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPE 175 (213)
T ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchh
Confidence 88877654221100 0 1466778999999998 4699999999999999999987652111 1122246
Q ss_pred cChhHHHHHHHHHhhccchHHHHHH
Q 043341 176 KYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 176 ~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
.||+|.+|+++|.++ |++++++.
T Consensus 176 ~~p~l~~w~~~~~~r--pa~~~~~~ 198 (213)
T PLN02378 176 SFPHVHNYMKTLFSL--DSFEKTKT 198 (213)
T ss_pred HhHHHHHHHHHHhcC--CCeecccC
Confidence 799999999999999 99987754
No 59
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.73 E-value=2.6e-17 Score=172.95 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=117.9
Q ss_pred CCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC-CCCCCCHHHHHH
Q 043341 48 ADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-NFYGQNAYEAGE 111 (758)
Q Consensus 48 ~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~L~p~~~~era~ 111 (758)
.++++++++++|+++|++|+.+.+ |+||+|++ +|..|+||.+|++||++.+ .-...++.++++
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~-d~~~L~ES~aI~~YL~e~~p~~~L~~~~era~ 150 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKL-DEKWVADSDVITQALEEKYPDPPLATPPEKAS 150 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEE-CCEEEecHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 488999999999999999997543 99999998 5679999999999999998 211146888999
Q ss_pred HHHHHHhccccC----C-----hHHHHHHHHHHHHhccc-CCcccCCCCCHhHHHHHHHHhhhhccc---ccccccccCh
Q 043341 112 IDEWLDYTPVFS----S-----GSEFENACTYVDKYLER-RTFVVGHSLSIVDIAIWSALAGTGQRW---DSLRKSKKYQ 178 (758)
Q Consensus 112 v~~wl~~~~~~l----~-----~~~l~~~L~~Le~~L~~-~~flvG~~lTlADi~l~~~L~~l~~~~---~~~~~~~~~P 178 (758)
+.+|+......+ . .+.+...+..||++|+. ++||+|+++|+||+++++.+.++.... .++.....+|
T Consensus 151 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P 230 (265)
T PLN02817 151 VGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLP 230 (265)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCH
Confidence 998765322111 0 14567888999999974 699999999999999999987752211 1222246899
Q ss_pred hHHHHHHHHHhhccchHHHHHH
Q 043341 179 NLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 179 ~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+|.+|+++|.++ |+|++++.
T Consensus 231 ~L~~w~~ri~~r--ps~~~~~~ 250 (265)
T PLN02817 231 FVKSYMKNIFSM--ESFVKTRA 250 (265)
T ss_pred HHHHHHHHHhcc--hhHhhcCC
Confidence 999999999999 99988744
No 60
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.72 E-value=1.7e-17 Score=191.86 Aligned_cols=203 Identities=14% Similarity=0.121 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHh
Q 043341 300 FVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMI 379 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 379 (758)
..+.|.++|++|||.+|.+...|.+-+...+++++|.++|.+|..
T Consensus 236 ~l~~~~~~~~~l~V~fD~~~~es~~~~~~~~v~~~L~~~g~~~e~----------------------------------- 280 (562)
T PRK12451 236 SLKEFSRIYELLGVEFTNFQGEAFYNDLMEDFIGILEEHDLLEES----------------------------------- 280 (562)
T ss_pred HHHHHHHHHHHcCCCceeecchHhhhhhHHHHHHHHHHCCCEEec-----------------------------------
Confidence 357889999999999996556777777788999999999998821
Q ss_pred cCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccccccccccccccc-CccEEee--CCCCCCchH
Q 043341 380 AGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKE-GITHALR--SSEYHDRNA 456 (758)
Q Consensus 380 ~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~-githvir--g~d~~~~~~ 456 (758)
+++++++++. .+ ..|.|+.|+||+..+.+ =|+|+..+-+.+ +.+++|- |.||..|-.
T Consensus 281 -------dGa~~~~~~~---~g-~~~~vl~ksDGt~~Y~t---------~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~ 340 (562)
T PRK12451 281 -------EGALVVNLEE---EG-MPPCLIRKSDGATIYAT---------RDLTAALYRQNTFGFDKALYVVGPEQSLHFN 340 (562)
T ss_pred -------CCeEEEEecc---cC-CCceEEEeCCCccccch---------hHHHHHHHHhhccCCCEEEEEeCCcHHHHHH
Confidence 2234444421 12 26899999998843222 267777766654 6777764 999999999
Q ss_pred HHHHHHHHhCCCcc---eEeeeeeeecccccccchh-----hhhhhhcCcc----------CCCCCCCcchHHHHHHcCC
Q 043341 457 QYYRIQEDLGVRKV---HIYEFSRLNMVYTLLSKRK-----LLWFVQNGKV----------DGWDDPRFPTVQGIVRRGL 518 (758)
Q Consensus 457 ~~~~l~~alg~~~p---~~~~~~~l~~~~~klSKR~-----~~~li~~g~~----------~gwddpr~~tl~~l~~~G~ 518 (758)
+...++++||+..+ .+..|+++++.|+|||||+ +++|+++..- ++++++ ....+.+
T Consensus 341 ~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~------~~~a~~v 414 (562)
T PRK12451 341 QFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQK------EEVAKQV 414 (562)
T ss_pred HHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccH------HHHHHHh
Confidence 99999999998633 3556688888889999999 4555544110 011110 0111225
Q ss_pred CHHHHHHHHHHhccccccccccHHHHHHHHHh---hccccCCcchhhhc
Q 043341 519 LVEALIQFILEQGASKNLNLMEWDKLWTINKK---IIDPVCPRHTAVIE 564 (758)
Q Consensus 519 ~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~---~l~~~~~r~~~v~~ 564 (758)
...|+|++++++ ...++.+|||+++.+++.. ||.-.--|...++.
T Consensus 415 g~~Airy~~l~~-~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlr 462 (562)
T PRK12451 415 GVGAVIFHDLKN-ERMHNIEFSLENMLKFEGETGPYVQYTHARACSILR 462 (562)
T ss_pred ccceeeeHHhhc-CCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHH
Confidence 578999998887 7788999999998776533 66655555444543
No 61
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.71 E-value=8.1e-17 Score=165.74 Aligned_cols=151 Identities=12% Similarity=0.172 Sum_probs=118.6
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--C----CCCC
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--N----FYGQ 104 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~----L~p~ 104 (758)
...|+++++|++++.++|++|+...+ |+||+|++ +|.+|+||.+|++||++.+ . +.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~-~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY-NTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE-CCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 35789999999999999999998654 89999987 8899999999999999987 2 4556
Q ss_pred CHHHHHHHH-HHHHh---ccccCC------hHHHHHHHHHHHHhcc------------------cCCcccCCCCCHhHHH
Q 043341 105 NAYEAGEID-EWLDY---TPVFSS------GSEFENACTYVDKYLE------------------RRTFVVGHSLSIVDIA 156 (758)
Q Consensus 105 ~~~era~v~-~wl~~---~~~~l~------~~~l~~~L~~Le~~L~------------------~~~flvG~~lTlADi~ 156 (758)
++..++... -|..+ ....-. .+.+.+.++.||++|. .++|++|+++|+|||+
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~ 174 (236)
T TIGR00862 95 HPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCN 174 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHH
Confidence 776666533 22222 211111 1347889999999997 4799999999999999
Q ss_pred HHHHHhhhhcc---cccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 157 IWSALAGTGQR---WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 157 l~~~L~~l~~~---~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
+++.+.++... ..+++..+.+|+|.+|++++.++ |+|+.++
T Consensus 175 l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~--~sf~~t~ 218 (236)
T TIGR00862 175 LLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAR--EEFTNTC 218 (236)
T ss_pred HHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhcc--chHHhhC
Confidence 99999987422 23444468899999999999999 9999863
No 62
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.2e-17 Score=186.33 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHH--HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHH
Q 043341 300 FVDNLLKDIETLGIKYETVTYTSDYFP--DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKE 377 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d~~~~~S~~~~--~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 377 (758)
..+.|.++|+.||+++|.+++.|+.+. .+.++++.|.++|++|..+
T Consensus 241 ~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~-------------------------------- 288 (577)
T COG0018 241 SLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDD-------------------------------- 288 (577)
T ss_pred HHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHHhcCCEeeeC--------------------------------
Confidence 457899999999999998887777543 5889999999999999421
Q ss_pred HhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEee--CCCCCCch
Q 043341 378 MIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR--SSEYHDRN 455 (758)
Q Consensus 378 ~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvir--g~d~~~~~ 455 (758)
| ..++. .+.....++..|.|+.|+||+..+.+. |+|++.+-+..|.+.+|- |.||+.|.
T Consensus 289 -------G-A~~vd--l~~~~~~gd~~~~vl~KSDGt~lY~t~---------DIAy~~~K~~~~~d~~IyV~gadq~~~~ 349 (577)
T COG0018 289 -------G-ALVVD--LLKFKKFGDDKDRVLQKSDGTYLYFTR---------DIAYHLYKFERGFDKLIYVLGADQHGHF 349 (577)
T ss_pred -------C-eEEEe--hhhhhhcCCCCCeEEEEcCCCeeeehh---------HHHHHHHHHhcCCCEEEEEeCCcchhHH
Confidence 1 11111 110014567789999999998433333 677777777677777764 99999999
Q ss_pred HHHHHHHHHhCCCcce-Eeee---eeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHc--------------
Q 043341 456 AQYYRIQEDLGVRKVH-IYEF---SRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRR-------------- 516 (758)
Q Consensus 456 ~~~~~l~~alg~~~p~-~~~~---~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~-------------- 516 (758)
.+...+++++|+..+. +..| +.+.. .+.|||||.+. ..||+++++.
T Consensus 350 ~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~---------------~vtl~dllde~~era~~~~~~~~~ 414 (577)
T COG0018 350 KQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAGERAPEEMEEKEE 414 (577)
T ss_pred HHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc---------------eEEHHHHHHHHHHHhhhHhhhhhh
Confidence 9999999999988762 3333 23333 35689999952 2355554433
Q ss_pred -------CCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 517 -------GLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 517 -------G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
-+..+|+|+++++. ...++..|||++..+++.
T Consensus 415 ~~~~iA~~vgi~Avry~~l~~-~~~~~~~Fd~d~~lsfeg 453 (577)
T COG0018 415 KNEEIAEVVGIDAVRYADLSR-SRDKDYVFDWDKALSFEG 453 (577)
T ss_pred hhHHHHHHhhhhhHHHHHHhc-CCCCCcEeeHHHHHhccC
Confidence 03388999999886 778899999999999887
No 63
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.69 E-value=4.4e-16 Score=179.99 Aligned_cols=276 Identities=15% Similarity=0.100 Sum_probs=169.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcc-------------cchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPA-------------KESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~-------------r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||++||||+|+.+..+.++| ++...|+..+||.+.+ .....+.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56677899999999999999998888887 4566788888888643 33446889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------c-CC----chHHHHHHhcCC-CCCcCCCCCHH----H--
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------D-DT----PREQMQKERMDG-IESKCRNNSIE----E-- 370 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~-~~----~~e~~~~~~~~~-~~~~~r~~~~~----~-- 370 (758)
||.+|.++++++ +.+.+++++.+|.++|++|. | .| +..++. ..+ ....|.. +++ +
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~---~~~p~~~~~~~-~~~~~~~~~~ 159 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI---EDGYRCPPTGA-PVEWVEEESY 159 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc---CCCCCCCCCCC-cceEEecCeE
Confidence 999997777776 88999999999999999992 2 12 111111 111 1112222 111 0
Q ss_pred --HHHHH----HHHhcCccC-CceeeEEeeecCCCCCCCCCCcEEEEeCCC-CCcccCC------cc-ccccccc-----
Q 043341 371 --NMKLW----KEMIAGSER-GLECCLRGKLDMQDPNKSLRDPVYYRCNPI-PHHRIGS------KY-KVYPTYD----- 430 (758)
Q Consensus 371 --~~~~~----~~~~~g~~~-~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~-~~~~~~~------~~-~~~PtY~----- 430 (758)
.+..| .+..++... ..+...+-++. .-.....+|+.|+|.... +.+.-++ .| +...+|.
T Consensus 160 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~-~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~ 238 (511)
T PRK11893 160 FFRLSKYQDKLLELYEANPDFIQPASRRNEVI-SFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGY 238 (511)
T ss_pred EEEcHHHHHHHHHHHHhCCCccCCHHHHHHHH-HHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcc
Confidence 01111 111111000 00000000000 001224789999993211 1111111 12 1111111
Q ss_pred -cccccc--ccc--cCcc-EEeeCCCCC-CchHHHHHHHHHhCCCcceEe-eeeeeecccccccchhhhhhhhcCccCCC
Q 043341 431 -FACPFV--DAK--EGIT-HALRSSEYH-DRNAQYYRIQEDLGVRKVHIY-EFSRLNMVYTLLSKRKLLWFVQNGKVDGW 502 (758)
Q Consensus 431 -~a~~vd--D~~--~git-hvirg~d~~-~~~~~~~~l~~alg~~~p~~~-~~~~l~~~~~klSKR~~~~li~~g~~~gw 502 (758)
.+|... +.. ...+ |+ -|.|.. .|...+..+..++|...|..+ .++++.++|+|||||+++
T Consensus 239 p~~~~~~~~~~~~~~~~D~~~-~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN----------- 306 (511)
T PRK11893 239 PDDEELLAELFNKYWPADVHL-IGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGN----------- 306 (511)
T ss_pred ccccccchhHHHhcCCCcceE-ecccccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCc-----------
Confidence 122110 100 0111 33 377876 566667677777887777544 458999999999999974
Q ss_pred CCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 503 DDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 503 ddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
+.++.++.+. ++++++|.|+++.+...++.+|+++.+...
T Consensus 307 ----~i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~ 346 (511)
T PRK11893 307 ----VIDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINR 346 (511)
T ss_pred ----EEcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHH
Confidence 4478888888 999999999999888899999999998654
No 64
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.8e-16 Score=156.00 Aligned_cols=159 Identities=18% Similarity=0.239 Sum_probs=132.7
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
|+++|+ |+...+.+..+|+++++.|++|+...+ |++|+|.+ ||..|.+|.||++||+++++|
T Consensus 2 ~~ykL~--Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~v-Dg~~i~QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 2 PPYKLT--YFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEV-DGKKLVQSRAILRYLARKFGL 78 (206)
T ss_pred CceEEE--ecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeE-CCEeeccHHHHHHHHHHHhCc
Confidence 347999 999999999999999999999998543 99999999 799999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhccccCC---------------h--------HHHHHHHHHHHHhcc--cCCcccCCCCCHhHHH
Q 043341 102 YGQNAYEAGEIDEWLDYTPVFSS---------------G--------SEFENACTYVDKYLE--RRTFVVGHSLSIVDIA 156 (758)
Q Consensus 102 ~p~~~~era~v~~wl~~~~~~l~---------------~--------~~l~~~L~~Le~~L~--~~~flvG~~lTlADi~ 156 (758)
.|.++.|+++++...+-...... . ......+..++..|. .+.||+|+++|+||++
T Consensus 79 ~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~ 158 (206)
T KOG1695|consen 79 AGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLV 158 (206)
T ss_pred CCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHH
Confidence 99999999999977653322211 0 145567788999998 4589999999999999
Q ss_pred HHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 157 IWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 157 l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
++..+..+... ........+|+|.++..++.+. |.+++.+++
T Consensus 159 i~e~l~~l~~~-~~~~~~~~~P~L~a~~~kv~~~--p~ik~~i~~ 200 (206)
T KOG1695|consen 159 IAEHLDTLEEL-LDPSALDHFPKLKAFKERVSSI--PNIKKYLES 200 (206)
T ss_pred HHHHHHHHHHh-cCchhhccChHHHHHHHHHhcC--chHHHHHhc
Confidence 99999987332 3333467889999999999999 999998875
No 65
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.68 E-value=1.1e-16 Score=185.78 Aligned_cols=253 Identities=17% Similarity=0.253 Sum_probs=165.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEe---------------------------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRF--------------------------------------- 288 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRi--------------------------------------- 288 (758)
++.=-+|||+|+|||||+|++++++.+||- +.|.-+.|.
T Consensus 115 ~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (566)
T TIGR00456 115 IIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGF 194 (566)
T ss_pred EEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHH
Confidence 555668999999999999999999999982 222222221
Q ss_pred -------------------------cCCCc------ccchHHHHHHHHHHHHHhCCCCCCcccccC--CHHHHHHHHHHH
Q 043341 289 -------------------------DDTNP------AKESNEFVDNLLKDIETLGIKYETVTYTSD--YFPDLMEMAENL 335 (758)
Q Consensus 289 -------------------------eDtd~------~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~--~~~~~~~~~~~L 335 (758)
+.-|+ ++..+...+.|.++|++||+.+|.+.+.++ +...+.+++++|
T Consensus 195 Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L 274 (566)
T TIGR00456 195 YVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDL 274 (566)
T ss_pred HHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHH
Confidence 00011 011223468889999999999998775555 334578888999
Q ss_pred HHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCC-CCcEEEEeCCC
Q 043341 336 IRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSL-RDPVYYRCNPI 414 (758)
Q Consensus 336 i~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~-~D~vl~R~~~~ 414 (758)
.++|.+|.. ++++++++. .++. .|.|+.|+||+
T Consensus 275 ~~~g~~~~~-------------------------------------------Ga~~~~~~~---~~d~~~~~vl~ksDGt 308 (566)
T TIGR00456 275 KEKGLVVED-------------------------------------------GALWLDLTL---FGDKDKDRVLQKSDGT 308 (566)
T ss_pred HHCCCEEEc-------------------------------------------CCEEEEccc---ccCCCCCeEEEECCCC
Confidence 999988810 123333321 1122 58999999988
Q ss_pred CCcccCCcccccccccccccccccccCccEEee--CCCCCCchHHHHHHHHHhCCCcc-eEeeeeeeecccccccchhh-
Q 043341 415 PHHRIGSKYKVYPTYDFACPFVDAKEGITHALR--SSEYHDRNAQYYRIQEDLGVRKV-HIYEFSRLNMVYTLLSKRKL- 490 (758)
Q Consensus 415 ~~~~~~~~~~~~PtY~~a~~vdD~~~githvir--g~d~~~~~~~~~~l~~alg~~~p-~~~~~~~l~~~~~klSKR~~- 490 (758)
..+.+. |+|+...-...+.+.+|- |.||..|-.+...++++||++.| .+.++++-.+.+.+||||++
T Consensus 309 ~~Y~t~---------DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn 379 (566)
T TIGR00456 309 YLYLTR---------DIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGN 379 (566)
T ss_pred ceechh---------hHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCc
Confidence 332222 666666655557777764 99999999999999999998766 45455665666789999994
Q ss_pred ----hhhhhcCcc-CCCCCCCcc------hHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH---hhccccC
Q 043341 491 ----LWFVQNGKV-DGWDDPRFP------TVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK---KIIDPVC 556 (758)
Q Consensus 491 ----~~li~~g~~-~gwddpr~~------tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~---~~l~~~~ 556 (758)
..++++..- .+ ... ....+.+. +..+++|+|+++.. ..++.+|||+++.+.|. -+|.-..
T Consensus 380 ~V~~~dll~~~~~ra~----~~i~~~~~~~~~~~~~~-vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~yiqYa~ 453 (566)
T TIGR00456 380 VISLDNLLDEASKRAG----NVITIKNDLEEEDVADA-VGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPYIQYAH 453 (566)
T ss_pred eeeHHHHHHHHHHHHH----HHHHhcCCccHHHHHHH-hcccceeeHHhhcC-CCCCceecHHHHhccCCCCchhHHHHH
Confidence 222222000 00 000 01134444 67799999999985 68999999999877643 2444444
Q ss_pred Ccchhhh
Q 043341 557 PRHTAVI 563 (758)
Q Consensus 557 ~r~~~v~ 563 (758)
-|...++
T Consensus 454 aR~~SIl 460 (566)
T TIGR00456 454 ARICSIL 460 (566)
T ss_pred HHHHHHH
Confidence 4544444
No 66
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.67 E-value=3.7e-16 Score=159.29 Aligned_cols=144 Identities=14% Similarity=0.239 Sum_probs=110.4
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCCC
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFYG 103 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~p 103 (758)
+|| ++..||+|++|+++|.++|++|+.+.+ |++|+|+.+||.+|+||.+|++||++++ ++++
T Consensus 1 ~Ly--~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLY--IYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred Cee--cCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 467 788899999999999999999997532 9999998568999999999999999998 3443
Q ss_pred CCHHHHHHHHHHHHhcccc----CC--------------------------------------h---HHHHHHHHHHHHh
Q 043341 104 QNAYEAGEIDEWLDYTPVF----SS--------------------------------------G---SEFENACTYVDKY 138 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~----l~--------------------------------------~---~~l~~~L~~Le~~ 138 (758)
. ..++++.+|+.+.... +. . ..+...|+.||++
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~ 156 (209)
T TIGR02182 79 G--KVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKL 156 (209)
T ss_pred C--CChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2 2456667776432211 10 0 3467788999999
Q ss_pred cccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccCh-hHHHHHHHHHhhccchH
Q 043341 139 LERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQ-NLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 139 L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P-~L~rW~~~i~~~~~p~~ 195 (758)
|.+++|++| .+|+|||++++.+.++.. ..+. .+| +|.+|+++|.++ +++
T Consensus 157 L~~~~~l~g-~~TiADi~l~~~l~~~~~-~~~~----~~p~~l~~w~~Ri~ar--~~~ 206 (209)
T TIGR02182 157 IDGPNAVNG-ELSEDDILVFPLLRNLTL-VAGI----NWPSRVADYLDNMSKK--SKV 206 (209)
T ss_pred HhCccccCC-CCCHHHHHHHHHhcCeee-ecCC----CCChHHHHHHHHHHHH--hCC
Confidence 999999965 699999999999988622 1111 256 999999999998 643
No 67
>PLN02224 methionine-tRNA ligase
Probab=99.65 E-value=1.1e-15 Score=177.09 Aligned_cols=288 Identities=14% Similarity=0.071 Sum_probs=174.0
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHcc-----cCceEEEEecCCC-------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQR-----YQGQLIVRFDDTN-------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilRieDtd-------------~~r~~~~~~~~i~~dl~~ 310 (758)
-++|=-+|+|||.+|||||++.++.+.+||- +...|+.-+||.+ |.....++.+.+.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 4888889999999999999999999999983 3445666666654 333445678889999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHh-cCCCCCcCCCCCHH----H----HH
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKER-MDGIESKCRNNSIE----E----NM 372 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~-~~~~~~~~r~~~~~----~----~~ 372 (758)
|||.+|.++++++ |.+..+++..+|.++|++| .|..+...+.+.. ..+..|++.+.+++ + .|
T Consensus 151 l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~L 230 (616)
T PLN02224 151 LDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFAL 230 (616)
T ss_pred cCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEh
Confidence 9999998888777 7788999999999999999 2321111111111 01122333333321 1 11
Q ss_pred HHH----HHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeC---CCCCcccCC----cc-ccccccccccc--ccc-
Q 043341 373 KLW----KEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCN---PIPHHRIGS----KY-KVYPTYDFACP--FVD- 437 (758)
Q Consensus 373 ~~~----~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~---~~~~~~~~~----~~-~~~PtY~~a~~--vdD- 437 (758)
..| ++..+..........|.+.-..--...+.|+-+-|.. |.+-|...+ -| +....|--++- -++
T Consensus 231 s~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~ 310 (616)
T PLN02224 231 SKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQ 310 (616)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhccccccc
Confidence 122 2222111000000000000000112346787777742 111111111 11 11122210000 000
Q ss_pred --------cccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCccCCCCCCCc
Q 043341 438 --------AKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRF 507 (758)
Q Consensus 438 --------~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~ 507 (758)
.--..-|++ |.|.+ .|+...-.++.++|++.|. ++.+++|.++|.|||||+++.
T Consensus 311 ~~~~~~~~~w~~~v~~i-GKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~--------------- 374 (616)
T PLN02224 311 NLETAVSFGWPASLHLI-GKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNT--------------- 374 (616)
T ss_pred ccchhhccCCCcceEEE-eecccccHHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCcc---------------
Confidence 001123554 88877 5777777777888988884 455589999999999999642
Q ss_pred chHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH-HHhhcc
Q 043341 508 PTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI-NKKIID 553 (758)
Q Consensus 508 ~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~-n~~~l~ 553 (758)
.+..++.++ |++|++|.|++..+...++.+|+++.+... |.+.++
T Consensus 375 i~p~e~l~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan 420 (616)
T PLN02224 375 LEPFELVQK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLAN 420 (616)
T ss_pred CCHHHHHHH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 356677777 999999999999888889999999986544 555555
No 68
>PLN02286 arginine-tRNA ligase
Probab=99.65 E-value=6.9e-16 Score=178.70 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhc
Q 043341 301 VDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIA 380 (758)
Q Consensus 301 ~~~i~~dl~~LGi~~d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 380 (758)
.+.+.+++++|||++|. .-.|.+-+.+.++++.|.++|.+|..
T Consensus 242 ~~~~~~~y~~l~V~fd~-~ges~y~~~~~~vi~~L~~~g~~~e~------------------------------------ 284 (576)
T PLN02286 242 RREFEKVYQRLRVELEE-KGESFYNPYIPGVIEELESKGLVVES------------------------------------ 284 (576)
T ss_pred HHHHHHHHHHhCCeeee-cCchhhhhhHHHHHHHHHHCCCEEee------------------------------------
Confidence 35677889999999986 34555666678888999999988832
Q ss_pred CccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccccc---ccccccccccc-CccEEee--CCCCCCc
Q 043341 381 GSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTY---DFACPFVDAKE-GITHALR--SSEYHDR 454 (758)
Q Consensus 381 g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY---~~a~~vdD~~~-githvir--g~d~~~~ 454 (758)
++++++..+ .. -+|.|+.|+||+ +|| |+|+....+.. +.+++|- |.||..|
T Consensus 285 ------dGa~~v~l~---~~--~~~~vl~ksDGt------------~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~h 341 (576)
T PLN02286 285 ------DGARVIFVE---GF--DIPLIVVKSDGG------------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQH 341 (576)
T ss_pred ------CCceEeecc---CC--CCceEEEECCCc------------hhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHH
Confidence 112333222 11 158999999988 555 77777776665 5676654 9999999
Q ss_pred hHHHHHHHHHhCCC-c-----ceEeeeeeee-cccccccchh-----hhhhhhcCc------------cCCCCCCCcchH
Q 043341 455 NAQYYRIQEDLGVR-K-----VHIYEFSRLN-MVYTLLSKRK-----LLWFVQNGK------------VDGWDDPRFPTV 510 (758)
Q Consensus 455 ~~~~~~l~~alg~~-~-----p~~~~~~~l~-~~~~klSKR~-----~~~li~~g~------------~~gwddpr~~tl 510 (758)
-.+...++++||+. . ..+..|+++. ..|++||||+ +++++++.. .+++++.....
T Consensus 342 f~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~- 420 (576)
T PLN02286 342 FDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQ- 420 (576)
T ss_pred HHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHH-
Confidence 99999999999975 2 3345567775 5677999998 455555311 01121111111
Q ss_pred HHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH---HhhccccCCcchhhh
Q 043341 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN---KKIIDPVCPRHTAVI 563 (758)
Q Consensus 511 ~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n---~~~l~~~~~r~~~v~ 563 (758)
..+-+...|+|++++++ ...++.+|||+++.+++ .-||+-.--|...++
T Consensus 421 ---~a~~vg~~Airy~~L~~-~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIl 472 (576)
T PLN02286 421 ---AAEAVGYGAVKYADLKN-NRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSII 472 (576)
T ss_pred ---HHHHhhhhhhhhhhhhc-CCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHH
Confidence 11125678999999887 77889999999977763 234444333433344
No 69
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.64 E-value=2.2e-15 Score=174.66 Aligned_cols=293 Identities=14% Similarity=0.164 Sum_probs=172.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCC-------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTN-------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd-------------~~r~~~~~~~~i~~dl~~L 311 (758)
+||--+|+|||.+||||+|+.+..+.+|| ++...|+..+||.+ +....+++.+.|.++++.|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999999999888887 33445666667654 3344557889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------cCCchHHHHHHhcCCCCCcCC------------------
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------DDTPREQMQKERMDGIESKCR------------------ 364 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~~~~~e~~~~~~~~~~~~~~r------------------ 364 (758)
||.+|..+++++ +.+.+++++++|.++|++|. |.....-+.+....|.-..|.
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~ 161 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEP 161 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCH
Confidence 999997666555 88889999999999999992 211111111110011100011
Q ss_pred -----------CCCHHH--------HHHHHHHHhcCccCCceeeE----EeeecC-CCCCCCCCCcEEEEeCC-CCCcc-
Q 043341 365 -----------NNSIEE--------NMKLWKEMIAGSERGLECCL----RGKLDM-QDPNKSLRDPVYYRCNP-IPHHR- 418 (758)
Q Consensus 365 -----------~~~~~~--------~~~~~~~~~~g~~~~~~~~~----R~k~~~-~~~~~~~~D~vl~R~~~-~~~~~- 418 (758)
+.+++- .+..+++.........+... +++.-. .--...+.|+-|-|... -++|.
T Consensus 162 ~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP 241 (530)
T TIGR00398 162 TELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVP 241 (530)
T ss_pred HHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCC
Confidence 111110 00111111110000000000 000000 00012367888887544 22221
Q ss_pred -cCC----cc-ccccccccccc-cc-------------ccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeee
Q 043341 419 -IGS----KY-KVYPTYDFACP-FV-------------DAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFS 476 (758)
Q Consensus 419 -~~~----~~-~~~PtY~~a~~-vd-------------D~~~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~ 476 (758)
+.+ .| +.-..| +++. .. |....+.|++ |.|.. .|+-.+..++.++|++.| .++.|+
T Consensus 242 ~~~~~~~yvW~da~~~y-~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~-G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g 319 (530)
T TIGR00398 242 NDPNKVVYVWFDALIGY-ISSLGILSGDTEDWKKWWNNDEDAELIHFI-GKDIVRFHTIYWPAMLMGLGLPLPTQVFSHG 319 (530)
T ss_pred CCCCcEEEEeecchHHh-HhhhccccCChhhHHHhCCCCCCceEEEEE-ecccchhHHHHHHHHHHhCCCCCCCEEEeec
Confidence 211 11 111122 2210 00 0011123443 88876 455566677888998777 466679
Q ss_pred eeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH-Hhh---c
Q 043341 477 RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN-KKI---I 552 (758)
Q Consensus 477 ~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n-~~~---l 552 (758)
++.++|.|||||+++ ..++.++.++ ++++++|.|++..+...++.+|+++.+.... +.. |
T Consensus 320 ~v~~~g~KmSKS~Gn---------------~i~~~d~i~~-~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l 383 (530)
T TIGR00398 320 YLTVEGGKMSKSLGN---------------VVDPSDLLAR-FGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKL 383 (530)
T ss_pred cEEECCceecccCCc---------------eecHHHHHHH-cCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999964 3477888888 9999999999988778899999999987764 433 3
Q ss_pred cccCCcch
Q 043341 553 DPVCPRHT 560 (758)
Q Consensus 553 ~~~~~r~~ 560 (758)
.....|..
T Consensus 384 ~n~~~r~~ 391 (530)
T TIGR00398 384 GNLLNRTL 391 (530)
T ss_pred HHHHHHHH
Confidence 34444543
No 70
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.64 E-value=5.6e-15 Score=160.22 Aligned_cols=252 Identities=14% Similarity=0.120 Sum_probs=150.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||.+||||+|+.++.+.++| ++...|+..+||.+. +...+.+.+.|.++++.|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 56667899999999999999999888888 344566667777753 334557889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCceec-------cCCch----------------HHHHHHhcCCCCCcCCC-
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAYV-------DDTPR----------------EQMQKERMDGIESKCRN- 365 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY~-------~~~~~----------------e~~~~~~~~~~~~~~r~- 365 (758)
||.+|..+++++ +.+.+.+++++|.++|.+|. |..+. +.+++.-..-+ .....
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~-~~~~~~ 161 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWL-EKNPDF 161 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHH-HhCCcc
Confidence 999997777666 77789999999999999993 21111 11111000000 00000
Q ss_pred CCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeC-CCCCcccCCc------c----------ccccc
Q 043341 366 NSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCN-PIPHHRIGSK------Y----------KVYPT 428 (758)
Q Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~-~~~~~~~~~~------~----------~~~Pt 428 (758)
.-++...+...++.+. .++|+.+-|.. .-++|..+++ | .+++.
T Consensus 162 ~~p~~~~~~~~~~l~~--------------------~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~ 221 (319)
T cd00814 162 IWPENARNEVLSWLKE--------------------GLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYN 221 (319)
T ss_pred CCCHHHHHHHHHHHhC--------------------CCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHccccc
Confidence 0001111111111111 13333333322 1111110110 2 11222
Q ss_pred cccccc--ccccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeeeeeecccccccchhhhhhhhcCccCCCCC
Q 043341 429 YDFACP--FVDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDD 504 (758)
Q Consensus 429 Y~~a~~--vdD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwdd 504 (758)
++-.+. ..+..-...|++ |.|.. .|+.....++.++|++.| .+..++++.++|+|||||+++
T Consensus 222 ~~~~~~~~~~~~~~~~v~~~-G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn------------- 287 (319)
T cd00814 222 EEWGNSWWWKDGWPELVHFI-GKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGN------------- 287 (319)
T ss_pred ccccchhhhhcCCCceEEEE-eechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEECCeeecccCCc-------------
Confidence 221110 001112234554 88877 455555567788898766 455558999999999999964
Q ss_pred CCcchHHHHHHcCCCHHHHHHHHHHhccccccccc
Q 043341 505 PRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLM 539 (758)
Q Consensus 505 pr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~ 539 (758)
..++.++++. ++++++|.|++..+...++.+|
T Consensus 288 --~i~~~~~l~~-~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 288 --VVDPDDLLER-YGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred --ccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCC
Confidence 3467788888 8999999999988766666554
No 71
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.63 E-value=4.5e-15 Score=160.64 Aligned_cols=252 Identities=18% Similarity=0.150 Sum_probs=155.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcc--------------------------cchH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPA--------------------------KESN 298 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~--------------------------r~~~ 298 (758)
+++==+|+|||.+||||+++.++.+.++| ++...|+..+|+.+.. ...+
T Consensus 3 ~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T cd00668 3 YVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVE 82 (312)
T ss_pred EEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHH
Confidence 34455799999999999999888777776 4555566666665421 1123
Q ss_pred HHHHHHHHHHHHhCCCCC--Ccccc--cCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHH
Q 043341 299 EFVDNLLKDIETLGIKYE--TVTYT--SDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKL 374 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi~~d--~~~~~--S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~ 374 (758)
++.+.|+++|+.|||..| ..+++ .++.+.+.+++++|.++|++|...... +.. ...+-+.+ +-.-++
T Consensus 83 ~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~~--~~~f~~~~-~l~~~~ 153 (312)
T cd00668 83 EMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RIT--EQWFFDMP-KFKEKL 153 (312)
T ss_pred HHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Eee--eeEEEEcH-HHHHHH
Confidence 577999999999999877 55444 347788999999999999999633211 000 00000000 000011
Q ss_pred HHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccccccccccc---------cccc-----
Q 043341 375 WKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFV---------DAKE----- 440 (758)
Q Consensus 375 ~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vd---------D~~~----- 440 (758)
.+.+.++... +. +.|.....--.+..|+.|.|.. .||. +.|+|++-|=+| .+..
T Consensus 154 ~~~~~~~~~~--p~--~~~~~~~~~l~~~~d~~isR~~-----~WG~---~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~ 221 (312)
T cd00668 154 LKALRRGKIV--PE--HVKNRMEAWLESLLDWAISRQR-----YWGT---PLPEDVFDVWFDSGIGPLGSLGYPEEKEWF 221 (312)
T ss_pred HHHHhcCCcC--Ch--HHHHHHHHHHhCCCCeEEeccC-----CCCC---cCCcccccchhhccHHHHHHcCCCccchhh
Confidence 1222222100 00 0000000000122399998853 2444 457888877211 1111
Q ss_pred ----CccEEeeCCCCC-CchHHHHHHHHHhCCC-cc-eEeeeeeeeccc-ccccchhhhhhhhcCccCCCCCCCcchHHH
Q 043341 441 ----GITHALRSSEYH-DRNAQYYRIQEDLGVR-KV-HIYEFSRLNMVY-TLLSKRKLLWFVQNGKVDGWDDPRFPTVQG 512 (758)
Q Consensus 441 ----githvirg~d~~-~~~~~~~~l~~alg~~-~p-~~~~~~~l~~~~-~klSKR~~~~li~~g~~~gwddpr~~tl~~ 512 (758)
..+--+-|.|+. .|......+..+++.. .| .+|.|+++.+.+ +|||||+++ ..++.+
T Consensus 222 ~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d 286 (312)
T cd00668 222 KDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPSD 286 (312)
T ss_pred hhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHHH
Confidence 122223388988 8888888888888754 33 677889999998 999999974 447888
Q ss_pred HHHcCCCHHHHHHHHHHhcccccccc
Q 043341 513 IVRRGLLVEALIQFILEQGASKNLNL 538 (758)
Q Consensus 513 l~~~G~~~eal~~~~~~~g~~~~~~~ 538 (758)
+.+. ++++++|.|++..+...++..
T Consensus 287 ~~~~-~~~da~R~~l~~~~~~~~d~~ 311 (312)
T cd00668 287 VVEK-YGADALRYYLTSLAPYGDDIR 311 (312)
T ss_pred HHHH-cCcHHHHHHHHhcCCccCCCC
Confidence 8888 999999999988755555443
No 72
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-14 Score=164.62 Aligned_cols=291 Identities=14% Similarity=0.168 Sum_probs=185.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
-+||==-|.|||.+||||+++.|..+.+|| +..|.=++=+..|| |+...+++.+.+++++++
T Consensus 7 ~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~ 86 (558)
T COG0143 7 ILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKA 86 (558)
T ss_pred EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999999999999998 45577677776655 555566788999999999
Q ss_pred hCCCCCCccccc--CCHHHHHHHHHHHHHhCceec-------cCCchHHHHHHhcCCCCCcCC--------------CCC
Q 043341 311 LGIKYETVTYTS--DYFPDLMEMAENLIRQGKAYV-------DDTPREQMQKERMDGIESKCR--------------NNS 367 (758)
Q Consensus 311 LGi~~d~~~~~S--~~~~~~~~~~~~Li~~G~aY~-------~~~~~e~~~~~~~~~~~~~~r--------------~~~ 367 (758)
|||.+|.+.+++ +|.+..+++.++|.++|.+|. |..+..-+-+..-.|....|+ ...
T Consensus 87 l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~ 166 (558)
T COG0143 87 LNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLD 166 (558)
T ss_pred hCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCC
Confidence 999999766654 477889999999999999982 221111111111111111111 011
Q ss_pred HHH-----------------------HHHHHHHHhcCccCCce----eeEEeeecCCCCCCCCCCcEEEEeCCCCCcccC
Q 043341 368 IEE-----------------------NMKLWKEMIAGSERGLE----CCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIG 420 (758)
Q Consensus 368 ~~~-----------------------~~~~~~~~~~g~~~~~~----~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~ 420 (758)
+.+ .|..|+.+.....+..+ ..-|.+.-...-...++|+.|-|.+. .||
T Consensus 167 P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~----~WG 242 (558)
T COG0143 167 PTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDL----DWG 242 (558)
T ss_pred chhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCC----CCC
Confidence 111 01112222111111100 00000000000124578999988542 344
Q ss_pred Ccccccc-----cc-----c----c--cc------c-----ccccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce-
Q 043341 421 SKYKVYP-----TY-----D----F--AC------P-----FVDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH- 471 (758)
Q Consensus 421 ~~~~~~P-----tY-----~----~--a~------~-----vdD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~- 471 (758)
-++.++| .| . + .| . -+| .-.+-|+| |.|-. .|+-..-.++.+.|.+.|.
T Consensus 243 ipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfI-GKDii~FHav~wPamL~~~~~~lP~~ 320 (558)
T COG0143 243 IPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFI-GKDIIRFHAVYWPAMLMAAGLPLPTR 320 (558)
T ss_pred ccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEe-ccccCcchhhHHHHHHHhCCCCCCCE
Confidence 4443332 22 0 0 00 0 012 33345777 88877 7888888899999999884
Q ss_pred EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhh
Q 043341 472 IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI 551 (758)
Q Consensus 472 ~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~ 551 (758)
+..+++|.++|+|||||+++ ......+.++ +++|.+|+|++....-.++.+|+|+.+....+..
T Consensus 321 i~ahg~l~~~G~KmSKSrG~---------------~V~~~~~~~~-~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~d 384 (558)
T COG0143 321 IFAHGFLTLEGQKMSKSRGN---------------VVDPDELLEQ-YGVDALRYYLARELPEGSDGDFSWEDFVERVNAD 384 (558)
T ss_pred EEeeeeEEECCccccccCCc---------------EEeHHHHHHH-cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 55668999999999999953 1234556666 9999999999998888899999999998886655
Q ss_pred cc----ccCCcchh
Q 043341 552 ID----PVCPRHTA 561 (758)
Q Consensus 552 l~----~~~~r~~~ 561 (758)
|. ..+.|.+.
T Consensus 385 L~n~lgNl~~R~~~ 398 (558)
T COG0143 385 LANKLGNLANRTLG 398 (558)
T ss_pred HHHHHHHHHHHHHH
Confidence 55 56667665
No 73
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.60 E-value=7.5e-15 Score=173.73 Aligned_cols=282 Identities=15% Similarity=0.082 Sum_probs=167.2
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCc-------------ccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNP-------------AKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~-------------~r~~~~~~~~i~~dl~~ 310 (758)
-++|==.|+|||++||||+++.+..+.++| +++..|+.-.||.+. +...+.+.+.|.++|++
T Consensus 6 ~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~ 85 (648)
T PRK12267 6 FYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKK 85 (648)
T ss_pred EEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999999999998888 334455555565543 33455788999999999
Q ss_pred hCCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHh-cCCCCCcCCCCCHH----H----HH
Q 043341 311 LGIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKER-MDGIESKCRNNSIE----E----NM 372 (758)
Q Consensus 311 LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~-~~~~~~~~r~~~~~----~----~~ 372 (758)
|||.+|.++++|+ +.+..+++..+|.++|++| .|..+..-+.... ..+.-|++.+.+++ + .+
T Consensus 86 lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l 165 (648)
T PRK12267 86 LDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRM 165 (648)
T ss_pred cCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEc
Confidence 9999998888887 7778899999999999999 2321111111111 11111222222221 0 01
Q ss_pred HHHHHHhcCccCCceeeE-----EeeecCCCCCCCCCCcEEEEeCC-CCCcccCCccccccccc------cccc-c--c-
Q 043341 373 KLWKEMIAGSERGLECCL-----RGKLDMQDPNKSLRDPVYYRCNP-IPHHRIGSKYKVYPTYD------FACP-F--V- 436 (758)
Q Consensus 373 ~~~~~~~~g~~~~~~~~~-----R~k~~~~~~~~~~~D~vl~R~~~-~~~~~~~~~~~~~PtY~------~a~~-v--d- 436 (758)
..|++.........+..+ +-.+-..--+..++|+.|-|... -+.|.-+++-....+|- +++. . +
T Consensus 166 ~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~~~ 245 (648)
T PRK12267 166 SKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGSDD 245 (648)
T ss_pred HHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCCCC
Confidence 112111111111000000 00000001122367888888421 11111111101111110 1110 0 0
Q ss_pred --c---cccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcch
Q 043341 437 --D---AKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPT 509 (758)
Q Consensus 437 --D---~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~t 509 (758)
+ +--...|+ -|.|.+ .|+-.+-.++.++|++.|. +.-|+++..+|+|||||+++ ..+
T Consensus 246 ~~~~~~~wp~~~~~-~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~eg~KMSKS~GN---------------~i~ 309 (648)
T PRK12267 246 DELFKKFWPADVHL-VGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGN---------------VVD 309 (648)
T ss_pred chHHHhhcccceEE-EeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEECCceecccCCc---------------ccC
Confidence 0 00001233 388876 4566666777788988874 55679999999999999964 336
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH
Q 043341 510 VQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547 (758)
Q Consensus 510 l~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~ 547 (758)
..++.++ |++|++|.|++..+...++.+|+++.+...
T Consensus 310 p~d~l~~-ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~ 346 (648)
T PRK12267 310 PEELVDR-YGLDALRYYLLREVPFGSDGDFSPEALVER 346 (648)
T ss_pred HHHHHHH-cCCcHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 6777777 999999999998878889999999997553
No 74
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.55 E-value=4.8e-14 Score=167.20 Aligned_cols=279 Identities=14% Similarity=0.149 Sum_probs=164.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+||==+|+|||.+||||+++.++.+.+||- ..|.-++-+..|| |....++|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 677778999999999999999999999882 3344344433333 3445567899999999999
Q ss_pred CCCCCCccccc--CCHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHhcCC------------CCC---------
Q 043341 312 GIKYETVTYTS--DYFPDLMEMAENLIRQGKAY-------VDDTPREQMQKERMDG------------IES--------- 361 (758)
Q Consensus 312 Gi~~d~~~~~S--~~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~~~~------------~~~--------- 361 (758)
||.+|.+++++ +|.+..++++.+|+++|.+| .|..+...+.+..-.| ..|
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~ 164 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSP 164 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCCh
Confidence 99999776665 48899999999999999999 2221111111110011 000
Q ss_pred ------cC--CCCCHH----H----HHHHHHHHhcCccCC---ceeeEEeeecCCCCCCCCCCcEEEEeCCC-CCcccCC
Q 043341 362 ------KC--RNNSIE----E----NMKLWKEMIAGSERG---LECCLRGKLDMQDPNKSLRDPVYYRCNPI-PHHRIGS 421 (758)
Q Consensus 362 ------~~--r~~~~~----~----~~~~~~~~~~g~~~~---~~~~~R~k~~~~~~~~~~~D~vl~R~~~~-~~~~~~~ 421 (758)
.| ...+++ + .+..|++........ .+..++-.+ ..--...+.|+.|-|...- +.|.-|+
T Consensus 165 ~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~l~d~~ISR~~~W~GipvP~~ 243 (673)
T PRK00133 165 TELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKM-KEWLEEGLQDWDISRDAPYFGFEIPGA 243 (673)
T ss_pred HhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhCCCcccceeeeCCccceECCCC
Confidence 00 011111 0 001111111100000 000000000 0001135679888885422 2222122
Q ss_pred c------c-cccccccccc-cc-cc--------cc-----cCccEEeeCCCCC-CchHHHHHHHHHhCCCcc-eEeeeee
Q 043341 422 K------Y-KVYPTYDFAC-PF-VD--------AK-----EGITHALRSSEYH-DRNAQYYRIQEDLGVRKV-HIYEFSR 477 (758)
Q Consensus 422 ~------~-~~~PtY~~a~-~v-dD--------~~-----~githvirg~d~~-~~~~~~~~l~~alg~~~p-~~~~~~~ 477 (758)
. | +..+.|-.+. -. ++ .- -.+.|++ |.|-. .|+-..-.++.++|++.| .+..|++
T Consensus 244 ~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~wpa~l~a~g~~lP~~v~~hg~ 322 (673)
T PRK00133 244 PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFI-GKDIIYFHTLFWPAMLEGAGYRLPTNVFAHGF 322 (673)
T ss_pred CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEE-eecchhHHHHHHHHHHHhCCCCCCCEEeeecc
Confidence 1 1 2222331111 01 10 00 1134554 88866 455556677788999877 4555689
Q ss_pred eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccc-ccccccHHHHHH
Q 043341 478 LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK-NLNLMEWDKLWT 546 (758)
Q Consensus 478 l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~-~~~~~d~~~l~~ 546 (758)
+.++|+|||||+++ ..+..++.++ ++++++|.|++..+... .+.+|+|+.+..
T Consensus 323 v~~~G~KMSKS~GN---------------vV~p~dlie~-ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~ 376 (673)
T PRK00133 323 LTVEGAKMSKSRGT---------------FIWARTYLDH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQ 376 (673)
T ss_pred EEecCCcccccCCc---------------ccCHHHHHHH-cCchHHHHHHHhcCCCCCCCCCCCHHHHHH
Confidence 99999999999974 3467788888 99999999999877666 789999998654
No 75
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.55 E-value=5.4e-14 Score=167.74 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=170.3
Q ss_pred CeeeeccCCCCCCCccchhhHHH-HHHHHHHcc--cCceEEEEecCCC----------------cccchHHHHHHHHHHH
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAA-LLNQYFAQR--YQGQLIVRFDDTN----------------PAKESNEFVDNLLKDI 308 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~a-l~n~~~Ar~--~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl 308 (758)
.-+||==.|+|||.+||||+++. +..+.+||. ..|.-++-+..|| |+...+++.+.+.+.+
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999975 667888883 4466666665555 3444556778889999
Q ss_pred HHhCCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------cc-CCchHHHHHHhcCCC-------------------
Q 043341 309 ETLGIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VD-DTPREQMQKERMDGI------------------- 359 (758)
Q Consensus 309 ~~LGi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~-~~~~e~~~~~~~~~~------------------- 359 (758)
++|||.+|.++++++ |.+..+++..+|.++|++| .| .|.. .+.+..-.|.
T Consensus 98 ~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~-fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~C 176 (801)
T PLN02610 98 DWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQK-FLADRLVEGTCPTEGCNYDSARGDQCEKC 176 (801)
T ss_pred HHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCC-CcchHHhcCcCCccccCccccccchhhhc
Confidence 999999998776664 6678899999999999998 23 2221 1111100110
Q ss_pred ----------CCcC--CCCCHH----H----HHHHHHHHhcCccCCc--eeeEEeee-cC--CCCCCCCCCcEEEEeCCC
Q 043341 360 ----------ESKC--RNNSIE----E----NMKLWKEMIAGSERGL--ECCLRGKL-DM--QDPNKSLRDPVYYRCNPI 414 (758)
Q Consensus 360 ----------~~~~--r~~~~~----~----~~~~~~~~~~g~~~~~--~~~~R~k~-~~--~~~~~~~~D~vl~R~~~~ 414 (758)
+..| ...+++ + .|..|++......... ...+|-.. .. ..-...++|+.+-|...-
T Consensus 177 g~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~W 256 (801)
T PLN02610 177 GKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKW 256 (801)
T ss_pred cccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCC
Confidence 0011 111111 0 0111222111111000 00111100 00 011235788888884211
Q ss_pred CCcc--cCCc------c-ccccccccccc------cccc-----ccCccEEeeCCCCC-CchHHHHHHHHHhCCC--cc-
Q 043341 415 PHHR--IGSK------Y-KVYPTYDFACP------FVDA-----KEGITHALRSSEYH-DRNAQYYRIQEDLGVR--KV- 470 (758)
Q Consensus 415 ~~~~--~~~~------~-~~~PtY~~a~~------vdD~-----~~githvirg~d~~-~~~~~~~~l~~alg~~--~p- 470 (758)
+.|. .|.+ | +....| +++. ..++ .-.+.|+| |.|-. .|+-..-.++.++|.+ .|
T Consensus 257 GipvP~~~~~~~v~YVWfDAl~~Y-is~~~~~~~~~~~~W~~~~~~~~~hfi-GKDi~~fH~i~wPa~L~a~g~~~~~p~ 334 (801)
T PLN02610 257 GVPVPLEKYKDKVFYVWFDAPIGY-VSITACYTPEWEKWWKNPENVELYQFM-GKDNVPFHTVMFPSTLLGTGENWTMMK 334 (801)
T ss_pred cccCCCCCCCCcEEEEehhhHHHH-HHHHhhhhhHHHHhcCCcccceEEEEE-eeecchhHHHHHHHHHHhCCCCcCCCC
Confidence 1111 1101 1 111122 1111 0111 11235776 88876 6778888888898854 56
Q ss_pred eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.+..+++++++|+|||||+++. .....+.+++|++|++|+|++..+...++.+|+|+.+....+
T Consensus 335 ~i~~~g~l~~eG~KMSKS~GNv---------------V~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~N 398 (801)
T PLN02610 335 TISVTEYLNYEGGKFSKSKGVG---------------VFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLN 398 (801)
T ss_pred EEEeccCEecCCceecCcCCcc---------------cCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHH
Confidence 4556689999999999999642 245667777799999999999998889999999988766633
No 76
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.53 E-value=1.8e-14 Score=157.94 Aligned_cols=185 Identities=22% Similarity=0.291 Sum_probs=117.3
Q ss_pred eeeecc-CCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCC-------------------------------
Q 043341 249 KVRLRF-APEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDT------------------------------- 291 (758)
Q Consensus 249 ~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDt------------------------------- 291 (758)
+|+.=| +|||||+|||||+|++++++.+|| .+.|.-|.|. .|.
T Consensus 21 kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 100 (354)
T PF00750_consen 21 KVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLEDL 100 (354)
T ss_dssp EEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHHHH
T ss_pred EEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchhhh
Confidence 454444 799999999999999999999999 4557767765 111
Q ss_pred ----------Ccc------c---------------------chHH-HHHHHHHHHHHhCCCCCCcccccC--CHHHHHHH
Q 043341 292 ----------NPA------K---------------------ESNE-FVDNLLKDIETLGIKYETVTYTSD--YFPDLMEM 331 (758)
Q Consensus 292 ----------d~~------r---------------------~~~~-~~~~i~~dl~~LGi~~d~~~~~S~--~~~~~~~~ 331 (758)
++. . .... +.+.++++|++||+.+|...+.|+ +-+.+.++
T Consensus 101 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~~v~~v 180 (354)
T PF00750_consen 101 YVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSGKVDEV 180 (354)
T ss_dssp HHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTTHHHHH
T ss_pred hhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhhHHHHH
Confidence 000 0 0012 446777888888888886665555 33457788
Q ss_pred HHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEe
Q 043341 332 AENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRC 411 (758)
Q Consensus 332 ~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~ 411 (758)
+++|.++|.+|.. ++++.++++ ..+...|+||.|+
T Consensus 181 l~~L~e~g~~~~~------------------------------------------dGa~~i~~~---~~g~~k~~Vl~ks 215 (354)
T PF00750_consen 181 LERLKEKGLLYES------------------------------------------DGALWIDLT---KFGDDKDRVLRKS 215 (354)
T ss_dssp HHHHHCTTTEEEE------------------------------------------TTEEEEEGC---CTSTSS-EEEEET
T ss_pred HHHHHhCCcEEec------------------------------------------CCcEEEech---hcCCCCcceEEcC
Confidence 8888888888721 235666653 2355678899999
Q ss_pred CCCCCcccCCcccccccc---ccccccccc-ccCccEEee--CCCCCCchHHHHHHHHHhCCCc--ce--Eeeeeee-ec
Q 043341 412 NPIPHHRIGSKYKVYPTY---DFACPFVDA-KEGITHALR--SSEYHDRNAQYYRIQEDLGVRK--VH--IYEFSRL-NM 480 (758)
Q Consensus 412 ~~~~~~~~~~~~~~~PtY---~~a~~vdD~-~~githvir--g~d~~~~~~~~~~l~~alg~~~--p~--~~~~~~l-~~ 480 (758)
||+ +|| |+|.+.+-+ ..+.+.+|- |.+|..|-.+...++++||+.. .. +..|+.+ ..
T Consensus 216 DGt------------~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~ 283 (354)
T PF00750_consen 216 DGT------------STYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLK 283 (354)
T ss_dssp TSE------------B-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEET
T ss_pred CCc------------eEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcC
Confidence 977 666 677776655 455665543 9999999999999999999831 22 2345544 34
Q ss_pred ccc-cccchhh
Q 043341 481 VYT-LLSKRKL 490 (758)
Q Consensus 481 ~~~-klSKR~~ 490 (758)
+|+ +||+|++
T Consensus 284 ~gk~~mstR~G 294 (354)
T PF00750_consen 284 DGKVKMSTRKG 294 (354)
T ss_dssp TBEESS-TTTT
T ss_pred CCCccccCCCC
Confidence 455 7999994
No 77
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.52 E-value=1.3e-13 Score=140.09 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=113.4
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc-------------hHHHHHHHHHHHHHhC
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE-------------SNEFVDNLLKDIETLG 312 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~-------------~~~~~~~i~~dl~~LG 312 (758)
+.=..|+|+|++||||+|+.++.+.+|| .+...|+..+||.+.+.. .+++.+.+.++++.||
T Consensus 23 ~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~ 102 (213)
T cd00672 23 MYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALN 102 (213)
T ss_pred EEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3445799999999999999999998888 566789999999985422 1233344444444444
Q ss_pred CCC-CCcccccCCHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEE
Q 043341 313 IKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR 391 (758)
Q Consensus 313 i~~-d~~~~~S~~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R 391 (758)
|.+ |.++++
T Consensus 103 i~~~d~~~rt---------------------------------------------------------------------- 112 (213)
T cd00672 103 VLPPDVVPRV---------------------------------------------------------------------- 112 (213)
T ss_pred CCCCCcceee----------------------------------------------------------------------
Confidence 443 222222
Q ss_pred eeecCCCCCCCCCCcEEEEeCCCCCcccCCccccccccccccccc--ccccC-ccEEeeCCCCC-CchHHHHHHHHHh-C
Q 043341 392 GKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFV--DAKEG-ITHALRSSEYH-DRNAQYYRIQEDL-G 466 (758)
Q Consensus 392 ~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vd--D~~~g-ithvirg~d~~-~~~~~~~~l~~al-g 466 (758)
||++|++. .++.. ++--.=|.|++ .|......+..++ |
T Consensus 113 -------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g 155 (213)
T cd00672 113 -------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATG 155 (213)
T ss_pred -------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhC
Confidence 66665531 22221 22222366766 5666666666664 5
Q ss_pred CCcceEeee-eeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhcccccccccc
Q 043341 467 VRKVHIYEF-SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLME 540 (758)
Q Consensus 467 ~~~p~~~~~-~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d 540 (758)
-+.+.+|.+ +++.+.|+|||||+++ ..++.++.+. ++++++|.|++.. ..+++.+||
T Consensus 156 ~~~~~~~~h~~~v~~~g~KMSKs~Gn---------------~v~~~dll~~-~~~da~R~~~l~~-~~~~~l~f~ 213 (213)
T cd00672 156 KPFARYWLHTGHLTIDGEKMSKSLGN---------------FITVRDALKK-YDPEVLRLALLSS-HYRSPLDFS 213 (213)
T ss_pred CCCCcEEEEEEEEeccCcchhhcCCC---------------ccCHHHHHHH-cCHHHHHHHHHhC-CcCCCCCCC
Confidence 556677877 7899999999999973 4588898886 9999999999886 677777765
No 78
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.50 E-value=1.1e-13 Score=137.71 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=119.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC-
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG- 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~- 99 (758)
|.|| +++.|..+++||++++++|++++...+ |.||+|+. +..+|.++.-|+.|+.+++
T Consensus 27 ~vLy--hhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~-g~~II~d~tqIIdYvErtf~ 103 (325)
T KOG4420|consen 27 LVLY--HHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH-GDNIISDYTQIIDYVERTFT 103 (325)
T ss_pred ceee--ecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec-CCeecccHHHHHHHHHHhhc
Confidence 6888 899999999999999999999887543 99999987 7889999999999999988
Q ss_pred ---CCCCC-CHHHHHHHHHHHH---------hcccc-CCh----------------------------------------
Q 043341 100 ---NFYGQ-NAYEAGEIDEWLD---------YTPVF-SSG---------------------------------------- 125 (758)
Q Consensus 100 ---~L~p~-~~~era~v~~wl~---------~~~~~-l~~---------------------------------------- 125 (758)
.|.|. +..+..++.++-. |..++ +++
T Consensus 104 ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay 183 (325)
T KOG4420|consen 104 GERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAY 183 (325)
T ss_pred ccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 56661 2222222222111 11111 000
Q ss_pred ------------------------HHHHHHHHHHHHhccc----CCcccCCCCCHhHHHHHHHHhhhhcccccccc--cc
Q 043341 126 ------------------------SEFENACTYVDKYLER----RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK--SK 175 (758)
Q Consensus 126 ------------------------~~l~~~L~~Le~~L~~----~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~--~~ 175 (758)
..+...|.++|+.|.. .+||+|+.+|+||+.+.+.|+++......-.. ..
T Consensus 184 ~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~g 263 (325)
T KOG4420|consen 184 LAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDG 263 (325)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccC
Confidence 4556667777888877 58999999999999999999997332222111 34
Q ss_pred cChhHHHHHHHHHhhccchHHHHHHhhh
Q 043341 176 KYQNLVRWFNSLSAEYSDSLDEVTATYV 203 (758)
Q Consensus 176 ~~P~L~rW~~~i~~~~~p~~~~~l~~~~ 203 (758)
..|||..|+.+++++ ++|+++++.+.
T Consensus 264 srpnle~Yf~rvrrR--~sf~kvlg~~f 289 (325)
T KOG4420|consen 264 SRPNLESYFERVRRR--FSFRKVLGDIF 289 (325)
T ss_pred CCccHHHHHHHHHhh--hHHHHhhhhHH
Confidence 689999999999999 99999999864
No 79
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.49 E-value=5.9e-13 Score=155.39 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=165.4
Q ss_pred eeeccCCCCCCCccchhhHHH-HHHHHHHc-----ccCceEEEEecCCCcc-------------cchHHHHHHHHHHHHH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAA-LLNQYFAQ-----RYQGQLIVRFDDTNPA-------------KESNEFVDNLLKDIET 310 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~a-l~n~~~Ar-----~~~G~~ilRieDtd~~-------------r~~~~~~~~i~~dl~~ 310 (758)
+||==+|+|||.|||||+++. ++.+.++| +++..|+..+||.+.+ ....++.+.|.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 677778999999999999998 88888877 3445666666766532 2345788999999999
Q ss_pred hCCCCCCccccc--CCHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHhcCCCCCc-CC----------------
Q 043341 311 LGIKYETVTYTS--DYFPDLMEMAENLIRQGKAY-------VDDTPREQMQKERMDGIESK-CR---------------- 364 (758)
Q Consensus 311 LGi~~d~~~~~S--~~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~~~~~~~~-~r---------------- 364 (758)
|||.+|..++++ ++.+..+++..+|.++|++| .|.....-+.+....| .|+ |.
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g-~cp~c~~~~~~G~~ce~cg~~~ 164 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEG-TCPYCGYEGARGDQCDNCGALL 164 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceec-cCCCCCCcccCCchhhhccccC
Confidence 999999877777 68999999999999999999 2221111111100011 011 11
Q ss_pred -------------CCCHH----H----HHHHHHHHhcCccCC---ceeeEEeeecCCCCCCCCCCcEEEEeCCCCCccc-
Q 043341 365 -------------NNSIE----E----NMKLWKEMIAGSERG---LECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRI- 419 (758)
Q Consensus 365 -------------~~~~~----~----~~~~~~~~~~g~~~~---~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~- 419 (758)
+..++ + .+..|++........ .+...+-++. .--...++|+.+-|...-++|.-
T Consensus 165 ~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~-~~l~~~l~Dw~ISR~~~WGipiP~ 243 (556)
T PRK12268 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTL-NWLKEGLKPRAITRDLDWGIPVPW 243 (556)
T ss_pred ChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHH-HHHhCCCCCcCceeeCCCCeeCCC
Confidence 00010 0 000011100000000 0000000000 00112577999988654222221
Q ss_pred -CCcc-cccc------cccccc------------cccccc--cCc--cEEeeCCCCC-CchHHHHHHHHHhC--CCcc-e
Q 043341 420 -GSKY-KVYP------TYDFAC------------PFVDAK--EGI--THALRSSEYH-DRNAQYYRIQEDLG--VRKV-H 471 (758)
Q Consensus 420 -~~~~-~~~P------tY~~a~------------~vdD~~--~gi--thvirg~d~~-~~~~~~~~l~~alg--~~~p-~ 471 (758)
++.- ..|+ .| +++ ..++.- .+. .|++ |.|.+ .|...+..++.+.| +..| .
T Consensus 244 ~~~~~~~iyvW~da~~~y-~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~-G~D~~~Fh~~~~p~~l~~~~~~~~~P~~ 321 (556)
T PRK12268 244 PGFEGKVFYVWFDAVIGY-ISASKEWAERTGDPEAWKEFWLDPETKSYYFI-GKDNIPFHSIIWPAMLLGSGEPLKLPDE 321 (556)
T ss_pred CCCCCcEEEEeehHhhHH-HHHHHHHHHhcCCchHHHHHhCCCCCeEEEEE-eeccCcchHHHHHHHHHhcCCCCCCCCE
Confidence 1110 1111 11 111 011111 222 2333 88876 34445556666777 5555 5
Q ss_pred EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHH-HHh
Q 043341 472 IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI-NKK 550 (758)
Q Consensus 472 ~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~-n~~ 550 (758)
+..|+|+.++|.|||||+++ ..+..++.++ +++|++|.|++..+....+.+|+++.+... |+.
T Consensus 322 v~~~G~v~~~G~KMSKS~GN---------------~I~p~dli~~-yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~ 385 (556)
T PRK12268 322 IVSSEYLTLEGGKFSKSRGW---------------GIWVDDALER-YPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSE 385 (556)
T ss_pred eeccCCEEECCeeeccCCCc---------------ccCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHH
Confidence 56668999999999999974 3477888888 999999999998877778899999997653 444
Q ss_pred h
Q 043341 551 I 551 (758)
Q Consensus 551 ~ 551 (758)
.
T Consensus 386 ~ 386 (556)
T PRK12268 386 L 386 (556)
T ss_pred h
Confidence 3
No 80
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.48 E-value=4.7e-14 Score=135.01 Aligned_cols=133 Identities=22% Similarity=0.171 Sum_probs=101.9
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHcc-----cCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCCCcccccCCH
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQR-----YQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF 325 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d~~~~~S~~~ 325 (758)
++.+.|+|||++||||+|++++.+.+||. ++..++..++|.+.......... |..|
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---------~~~~---------- 61 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---------GENA---------- 61 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---------CCCH----------
Confidence 46789999999999999999998888885 48999999999997665443222 1111
Q ss_pred HHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCC
Q 043341 326 PDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRD 405 (758)
Q Consensus 326 ~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D 405 (758)
+++. +.+.+.|++..+
T Consensus 62 -----------------------~~~~----------------~~~~~~~~~~~~------------------------- 77 (143)
T cd00802 62 -----------------------KAFV----------------ERWIERIKEDVE------------------------- 77 (143)
T ss_pred -----------------------HHHH----------------HHHHHHHHHHHH-------------------------
Confidence 1111 111111211110
Q ss_pred cEEEEeCCCCCcccCCcccccccccccccccccccCc---cEEeeCCCCCCchHHHHHHHHHhCCC-cceEeeeeeeecc
Q 043341 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGI---THALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMV 481 (758)
Q Consensus 406 ~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~gi---thvirg~d~~~~~~~~~~l~~alg~~-~p~~~~~~~l~~~ 481 (758)
|++.|++++...++ |+.++|.|+..|...+.++++++|+. .|...+|++|+..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 89999999999999 99999999999999999999999876 6888888999886
Q ss_pred c-ccccchh
Q 043341 482 Y-TLLSKRK 489 (758)
Q Consensus 482 ~-~klSKR~ 489 (758)
+ +|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 5 8999995
No 81
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.47 E-value=1.1e-13 Score=153.53 Aligned_cols=280 Identities=18% Similarity=0.164 Sum_probs=155.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCC----------------CcccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDT----------------NPAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDt----------------d~~r~~~~~~~~i~~dl~~L 311 (758)
+||==.|.|||.|||||+.+.+..+.+||- ..|.=++-+..| +|+....++.+.|++.++.|
T Consensus 2 ~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~ 81 (391)
T PF09334_consen 2 YITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEAL 81 (391)
T ss_dssp EEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345556999999999999999999999983 346555555444 35556667889999999999
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHHhcCCCC------------Cc-CCCCCHH
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKERMDGIE------------SK-CRNNSIE 369 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~~~~~~~------------~~-~r~~~~~ 369 (758)
||.+|.+.++++ |.+..+++.++|.++|.+| .|..+..-+.+....|.- |. |. ...+
T Consensus 82 ~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG-~~~~ 160 (391)
T PF09334_consen 82 NISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCG-RPLE 160 (391)
T ss_dssp T---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTS-SBEE
T ss_pred CCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCC-CCcc
Confidence 999997776654 6677899999999999998 232221111111111100 00 11 0000
Q ss_pred --HHHHHHHHHhcCccC--CceeeEEeeecCC----------C---------------CCCCCCCcEEEEeCCCCCcccC
Q 043341 370 --ENMKLWKEMIAGSER--GLECCLRGKLDMQ----------D---------------PNKSLRDPVYYRCNPIPHHRIG 420 (758)
Q Consensus 370 --~~~~~~~~~~~g~~~--~~~~~~R~k~~~~----------~---------------~~~~~~D~vl~R~~~~~~~~~~ 420 (758)
+... ..-...|... ..+..+-|+++.. . -+..+.|+-|-|. -.||
T Consensus 161 ~~~l~~-p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~-----~~WG 234 (391)
T PF09334_consen 161 PEELIN-PVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRP-----LDWG 234 (391)
T ss_dssp CCCSEC-EEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECT-----TSSS
T ss_pred cccccC-CccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecC-----CCCc
Confidence 0000 0000000000 0011111222110 0 0123566655522 2244
Q ss_pred Ccccc------------cccccc--cccc--------------cccccCccEEeeCCCCC-CchHHHHHHHHHhCCCcce
Q 043341 421 SKYKV------------YPTYDF--ACPF--------------VDAKEGITHALRSSEYH-DRNAQYYRIQEDLGVRKVH 471 (758)
Q Consensus 421 ~~~~~------------~PtY~~--a~~v--------------dD~~~githvirg~d~~-~~~~~~~~l~~alg~~~p~ 471 (758)
-++.+ ...|-. .... +|..-.+.|+| |.|.. .|+.....++.++|++.|.
T Consensus 235 I~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~ 313 (391)
T PF09334_consen 235 IPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPR 313 (391)
T ss_dssp EEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---S
T ss_pred ceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCC
Confidence 43311 112200 0001 22233456776 88876 6777888888899999884
Q ss_pred -EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 472 -IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 472 -~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
+.-++++.++|.|||||.++ .....+++++ +++|++|.|++..+....+++|+++.+...++.
T Consensus 314 ~i~~~~~~~~~g~K~SkS~gn---------------~i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~ 377 (391)
T PF09334_consen 314 RIVVHGFLTLDGEKMSKSRGN---------------VIWPDDLLEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNN 377 (391)
T ss_dssp EEEEE--EEETTCCEETTTTE---------------SSBHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHH
T ss_pred EEEeeeeEEECCeeccccCCc---------------ccCHHHHHHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 44558999999999999853 2356777777 999999999999999999999999999887666
Q ss_pred hcc
Q 043341 551 IID 553 (758)
Q Consensus 551 ~l~ 553 (758)
.|.
T Consensus 378 ~L~ 380 (391)
T PF09334_consen 378 ELA 380 (391)
T ss_dssp CCC
T ss_pred HHH
Confidence 654
No 82
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.42 E-value=1.9e-12 Score=141.34 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=70.6
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecC----CCcc--------------------------cchH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDD----TNPA--------------------------KESN 298 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieD----td~~--------------------------r~~~ 298 (758)
=||+|||.+||||||+.++.+.++| +|...|+..+|| ++.+ ...+
T Consensus 8 ~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~ 87 (338)
T cd00818 8 GPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFAL 87 (338)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHH
Confidence 3799999999999999998888887 345556666666 3321 2233
Q ss_pred HHHHHHHHHHHHhCC--CCCCcc--cccCCHHHHHHHHHHHHHhCceecc
Q 043341 299 EFVDNLLKDIETLGI--KYETVT--YTSDYFPDLMEMAENLIRQGKAYVD 344 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi--~~d~~~--~~S~~~~~~~~~~~~Li~~G~aY~~ 344 (758)
++.+.|.++|+.||+ .||..+ ..+++.+..++++.+|.++|++|..
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~ 137 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRG 137 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEecc
Confidence 677999999999999 666443 3456889999999999999999954
No 83
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.39 E-value=2.5e-12 Score=139.10 Aligned_cols=93 Identities=24% Similarity=0.364 Sum_probs=71.2
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCccc-------------chHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAK-------------ESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r-------------~~~~~~~~i~~dl~~L 311 (758)
++|==+|+|||.+||||+|+.++.+.+|| ++...|+..+||.+... ..+++.+.+.++|+.|
T Consensus 3 ~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 82 (314)
T cd00812 3 YILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM 82 (314)
T ss_pred EEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45666899999999999999998888887 45567777788886432 2457889999999999
Q ss_pred CCCCCC--cccccC--CHHHHHHHHHHHHHhCcee
Q 043341 312 GIKYET--VTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 312 Gi~~d~--~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|+.+|- .+.+++ +.+..+++..+|.++|.+|
T Consensus 83 gi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 83 GFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred ccceecccccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999882 323322 3445566667999999999
No 84
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.34 E-value=3.2e-12 Score=141.95 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=69.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCCcc--------------------------------c
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTNPA--------------------------------K 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd~~--------------------------------r 295 (758)
++|==+|+|||.|||||+++.++.+.+||- ..|.-++.+..+|.. .
T Consensus 4 ~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
T cd00817 4 VIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWE 83 (382)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHH
Confidence 455568999999999999999999999983 345555554333320 1
Q ss_pred chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
...++.+.+.++++.||+..| ..+++++ +.+..+.+..+|.++|++|
T Consensus 84 ~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 134 (382)
T cd00817 84 WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIY 134 (382)
T ss_pred HHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 234577899999999999765 5555544 6677889999999999999
No 85
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.6e-12 Score=135.80 Aligned_cols=286 Identities=15% Similarity=0.107 Sum_probs=172.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+.|-=--.||-..||||++++++.+.+|| ...|.-+.-.+.|| |....+...+++..-.+-+
T Consensus 42 ~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~ 121 (578)
T KOG0436|consen 42 VLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDA 121 (578)
T ss_pred EEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHh
Confidence 33433346888899999999999999998 46688777677776 3223333445555556678
Q ss_pred CCCCCCcccccC--CHHHHHHHHHHHHHhCcee-------ccCCchHHHHHH---hcCCCCCc---------CCCCCHHH
Q 043341 312 GIKYETVTYTSD--YFPDLMEMAENLIRQGKAY-------VDDTPREQMQKE---RMDGIESK---------CRNNSIEE 370 (758)
Q Consensus 312 Gi~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY-------~~~~~~e~~~~~---~~~~~~~~---------~r~~~~~~ 370 (758)
||.++.+.++++ |....+++-..+.++|.+| .|-.+.....+. +..+-+++ |--++.+.
T Consensus 122 gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~N 201 (578)
T KOG0436|consen 122 GIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDN 201 (578)
T ss_pred CcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecccc
Confidence 999998888776 7788999999999999998 232222222221 12211111 10001000
Q ss_pred ---HHHHHHHHhcCccCCceeeE----EeeecCCCCCCCCCCcEEEEeCCCCCcccCCcccccc-----cc-----cccc
Q 043341 371 ---NMKLWKEMIAGSERGLECCL----RGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP-----TY-----DFAC 433 (758)
Q Consensus 371 ---~~~~~~~~~~g~~~~~~~~~----R~k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~~~P-----tY-----~~a~ 433 (758)
.|..|++.......+.+..+ +-..-..-....+.|+-+-|.. .+-.||-+..|-+ .| +|-.
T Consensus 202 Y~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRps--arl~WGIPvP~ddsQtIYVWfDAL~nYiS 279 (578)
T KOG0436|consen 202 YFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPS--ARLDWGIPVPGDDSQTIYVWFDALLNYIS 279 (578)
T ss_pred eeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChh--hhcccCCCCCCCCcceEEEeHHHHhhHHH
Confidence 12223222211111100000 0000000012346788777743 2223433221111 11 0111
Q ss_pred ccccc----c------c---CccEEeeCCCCC-CchHHHHHHHHHhCCCcce-EeeeeeeecccccccchhhhhhhhcCc
Q 043341 434 PFVDA----K------E---GITHALRSSEYH-DRNAQYYRIQEDLGVRKVH-IYEFSRLNMVYTLLSKRKLLWFVQNGK 498 (758)
Q Consensus 434 ~vdD~----~------~---githvirg~d~~-~~~~~~~~l~~alg~~~p~-~~~~~~l~~~~~klSKR~~~~li~~g~ 498 (758)
+|-.- - . .-.||| |.|.+ .|+...-.++-+.|++.|. +..|+|...+|.||||+.++..
T Consensus 280 vig~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNvv----- 353 (578)
T KOG0436|consen 280 VIGYPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV----- 353 (578)
T ss_pred hhcCCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhcccc-----
Confidence 11000 0 0 023777 88876 6777777888889999884 6667999999999999986533
Q ss_pred cCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 499 VDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 499 ~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
||+ .|.++ |+++++|+|++..|.-.++.+|+.++|....+.+|..
T Consensus 354 -----dP~-----~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 354 -----DPF-----ELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred -----CHH-----HHHHH-hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 553 57777 9999999999999999999999999999998888763
No 86
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.33 E-value=6.1e-11 Score=128.69 Aligned_cols=235 Identities=18% Similarity=0.208 Sum_probs=150.0
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccc---------------------------
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE--------------------------- 296 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~--------------------------- 296 (758)
+++.-=+++|||.+||||+|..+..+.++| .+...|+.-.||.|+-|.
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 355556778999999999999988887777 566788888899876222
Q ss_pred ---hHHHHHHHHHHHHHhCCCCCCcccccC-CHH-HHHHHHH-HHHHhCceeccCCchHHHHHHhcC----CC------C
Q 043341 297 ---SNEFVDNLLKDIETLGIKYETVTYTSD-YFP-DLMEMAE-NLIRQGKAYVDDTPREQMQKERMD----GI------E 360 (758)
Q Consensus 297 ---~~~~~~~i~~dl~~LGi~~d~~~~~S~-~~~-~~~~~~~-~Li~~G~aY~~~~~~e~~~~~~~~----~~------~ 360 (758)
.+.+.+.+.+.|+.|||++| .+++++ |.. .|.+.+. .|.+.+.+. +.+.+.+.. .| .
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d-~~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p~c 172 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE-FISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMPYC 172 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee-eeecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeeeec
Confidence 33567888999999999998 444444 222 3444333 444455543 333333321 11 1
Q ss_pred CcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCccc-----CC---cc-ccccc-cc
Q 043341 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRI-----GS---KY-KVYPT-YD 430 (758)
Q Consensus 361 ~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~-----~~---~~-~~~Pt-Y~ 430 (758)
..|.... ..++ ..+. ...-|-|++. .+|.-+ |. +| --||+ |
T Consensus 173 ~~cg~~~-------------------~~v~--~~d~------~~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~rW- 223 (353)
T cd00674 173 EKCGKDT-------------------TTVE--AYDA------KAGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMRW- 223 (353)
T ss_pred CCcCcce-------------------eEEE--EEeC------CCCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhhh-
Confidence 1222100 0010 0110 0123566652 233211 11 33 23442 2
Q ss_pred ccccccccccCccEEeeCCCCCCc---hHHHHHHHH-HhCCCcceEeeeeeeecccc-cccchhhhhhhhcCccCCCCCC
Q 043341 431 FACPFVDAKEGITHALRSSEYHDR---NAQYYRIQE-DLGVRKVHIYEFSRLNMVYT-LLSKRKLLWFVQNGKVDGWDDP 505 (758)
Q Consensus 431 ~a~~vdD~~~githvirg~d~~~~---~~~~~~l~~-alg~~~p~~~~~~~l~~~~~-klSKR~~~~li~~g~~~gwddp 505 (758)
...||+-=+-|.||..+ ...-..+.+ .||.+.|....|+++.+.+. |||||+++
T Consensus 224 -------~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGn-------------- 282 (353)
T cd00674 224 -------AILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGN-------------- 282 (353)
T ss_pred -------hhcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCC--------------
Confidence 23566666679999988 777778887 99999898778888888876 99999974
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHHhccccccccccHH
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWD 542 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~ 542 (758)
..++.++++. ++++++|.|+++..-...+..||++
T Consensus 283 -vI~~~dll~~-~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 283 -VITPSDWLEV-APPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred -cCCHHHHHHH-hChHHHHHHHHhCCCCCCCCCcChh
Confidence 3488899888 9999999999887435567788875
No 87
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.28 E-value=4.4e-11 Score=136.83 Aligned_cols=240 Identities=17% Similarity=0.168 Sum_probs=152.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCccc-----------------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAK----------------------------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r----------------------------- 295 (758)
++.--+.+|||.+||||++..+..+.++| ++...||.--||.|+-|
T Consensus 25 ~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~ 104 (510)
T PRK00750 25 VVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGC 104 (510)
T ss_pred EEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCC
Confidence 66666778999999999999988888777 45567777778887521
Q ss_pred ---chHHHHHHHHHHHHHhCCCCCCcccccCC--HHHHHHHHHHHH-HhCceeccCCchHHHHHHhc----CCC------
Q 043341 296 ---ESNEFVDNLLKDIETLGIKYETVTYTSDY--FPDLMEMAENLI-RQGKAYVDDTPREQMQKERM----DGI------ 359 (758)
Q Consensus 296 ---~~~~~~~~i~~dl~~LGi~~d~~~~~S~~--~~~~~~~~~~Li-~~G~aY~~~~~~e~~~~~~~----~~~------ 359 (758)
..+.|.+.+.+.|+.|||++| ++++++. -..|.+.+...+ +.+.+. +.+.+.+. ..|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~gi~~d-~~~~t~~y~~g~~~~~i~~~l~~~~~i~------~il~~~~~~~~~~~~~P~~pi 177 (510)
T PRK00750 105 HESYAEHFNAPLREFLDRFGIEYE-FISATECYKSGRYDEAILTALENRDEIM------EILLPYLGEERQATYSPFLPI 177 (510)
T ss_pred chHHHHHHHHHHHHHHHHcCCceE-EEehhhhhccCchHHHHHHHHHhHHHHH------HHHHHhcCCccCCCeeeeeee
Confidence 223566888899999999998 3344331 113433333333 334333 23333321 111
Q ss_pred CCcCCCCCHHHHHHHHHHHhcCccCCceeeEEe-eecCCCCCCCCCCcEEEEeCCCCCcc-----cCC---cc-cccc-c
Q 043341 360 ESKCRNNSIEENMKLWKEMIAGSERGLECCLRG-KLDMQDPNKSLRDPVYYRCNPIPHHR-----IGS---KY-KVYP-T 428 (758)
Q Consensus 360 ~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~-k~~~~~~~~~~~D~vl~R~~~~~~~~-----~~~---~~-~~~P-t 428 (758)
...|... ..... ..|. . .--|-|++. .+|.- .|. +| --|| -
T Consensus 178 c~~cg~~---------------------~~~~~~~~d~--~----~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~r 229 (510)
T PRK00750 178 CPKCGKV---------------------LTTPVISYDA--E----AGTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMR 229 (510)
T ss_pred CCCCCcc---------------------ceEEEEEEeC--C----CCEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHH
Confidence 1122211 00000 1110 0 012445442 22211 111 33 2344 2
Q ss_pred ccccccccccccCccEEeeCCCCCC-chHHHHHHHH-HhCCCcceEeeeeeeecc-cccccchhhhhhhhcCccCCCCCC
Q 043341 429 YDFACPFVDAKEGITHALRSSEYHD-RNAQYYRIQE-DLGVRKVHIYEFSRLNMV-YTLLSKRKLLWFVQNGKVDGWDDP 505 (758)
Q Consensus 429 Y~~a~~vdD~~~githvirg~d~~~-~~~~~~~l~~-alg~~~p~~~~~~~l~~~-~~klSKR~~~~li~~g~~~gwddp 505 (758)
| ...||+..+.|.||.. +...+..+.+ .||.+.|..+.|+++... |+|||||+++.
T Consensus 230 W--------~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~------------- 288 (510)
T PRK00750 230 W--------AALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNV------------- 288 (510)
T ss_pred H--------HHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCc-------------
Confidence 3 3467899999999999 9999999998 999999988888999888 89999999743
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
.++.++.+. ++++++|.|+.......++..|++ |......
T Consensus 289 --i~~~d~l~~-~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~de 328 (510)
T PRK00750 289 --ITIEDWLEY-APPESLRLFMFARPKPAKRLDFDV--IPKLVDE 328 (510)
T ss_pred --cCHHHHHHH-CCHHHHHHHHHhCCCCCCCCcccH--HHHHHHH
Confidence 477888887 899999988887667777888887 4444333
No 88
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.19 E-value=5.5e-11 Score=105.65 Aligned_cols=93 Identities=27% Similarity=0.392 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhccccC---ChHHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccc
Q 043341 92 LRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFS---SGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW 168 (758)
Q Consensus 92 l~yL~~~~~L~p~~~~era~v~~wl~~~~~~l---~~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~ 168 (758)
+|||++...|+|.++.+++++++|+++....+ ...++...++.||++|+.++|++|+++|+|||++++.+.+.
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~vd~~~d~~~~~l~~~~~~~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~---- 76 (96)
T cd03200 1 ARFLYRLLGPAPNAPNAATNIDSWVDTAIFQLAEGSSKEKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQT---- 76 (96)
T ss_pred CchHHHHhcccCCCchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHc----
Confidence 47898887799999999999999999775333 34788899999999999999999999999999999988753
Q ss_pred ccccccccChhHHHHHHHHHhh
Q 043341 169 DSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 169 ~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
+.. ...+|+|.+|+++|.++
T Consensus 77 -~~~-~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 77 -GLA-SAAPANVQRWLKSCENL 96 (96)
T ss_pred -ccc-cccChHHHHHHHHHHhC
Confidence 111 35799999999999763
No 89
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.16 E-value=9e-11 Score=107.96 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHhccccCCh--------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhh
Q 043341 104 QNAYEAGEIDEWLDYTPVFSSG--------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163 (758)
Q Consensus 104 ~~~~era~v~~wl~~~~~~l~~--------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~ 163 (758)
.++..++++++|+.|....+.+ +.+.+.++.||+.|++++|++|+++|+|||++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~ 81 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQ 81 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHH
Confidence 4788999999999998887663 47888999999999999999999999999999988866
Q ss_pred hhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 164 TGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 164 l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
+............+|+|.+|+++|.++ |+|+++
T Consensus 82 ~~~~~~~~~~~~~~P~L~~w~~r~~~r--pa~~~~ 114 (115)
T cd03196 82 FAHVDPKWFDQSPYPRLRRWLNGFLAS--PLFSKI 114 (115)
T ss_pred HHHhhhcccCcccCHHHHHHHHHHHcC--hHHHhh
Confidence 522111111247899999999999999 999875
No 90
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.07 E-value=1.5e-09 Score=109.57 Aligned_cols=148 Identities=13% Similarity=0.195 Sum_probs=108.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeCCCcEEechHHHHHHHHHhC------
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG------ 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~------ 99 (758)
+.|| -+..||+|.+||..|.+.|++|+++++ .+||.|.. .|+.+.||.+|+.-|+.-.
T Consensus 91 l~Ly--QyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~-~Geqm~dSsvIIs~laTyLq~~~q~ 167 (370)
T KOG3029|consen 91 LVLY--QYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLI-RGEQMVDSSVIISLLATYLQDKRQD 167 (370)
T ss_pred EEEE--eeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEe-ccceechhHHHHHHHHHHhccCCCC
Confidence 5677 899999999999999999999999876 89999998 5778999999998774321
Q ss_pred -----CCCC-----------------------------CCHHHHHHHHHHHHhccccCC----h----------------
Q 043341 100 -----NFYG-----------------------------QNAYEAGEIDEWLDYTPVFSS----G---------------- 125 (758)
Q Consensus 100 -----~L~p-----------------------------~~~~era~v~~wl~~~~~~l~----~---------------- 125 (758)
.+|| .+.+.+..-..|-+|++..+. |
T Consensus 168 l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf 247 (370)
T KOG3029|consen 168 LGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWF 247 (370)
T ss_pred HHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHH
Confidence 2333 111223344556666655432 0
Q ss_pred -------------------------------------------HHHHHHHHHHHHhc-ccCCcccCCCCCHhHHHHHHHH
Q 043341 126 -------------------------------------------SEFENACTYVDKYL-ERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 126 -------------------------------------------~~l~~~L~~Le~~L-~~~~flvG~~lTlADi~l~~~L 161 (758)
+.+-.+++.+-..| .+++|+.|+++++||+++|..|
T Consensus 248 ~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl 327 (370)
T KOG3029|consen 248 SQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVL 327 (370)
T ss_pred HHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhh
Confidence 44555555555566 5789999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhh
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
..+......- ..-+..++..||-+|++.
T Consensus 328 ~sm~gc~afk-d~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 328 RSMEGCQAFK-DCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hHhhhhhHHH-HHHhcchHHHHHHHHHHH
Confidence 9874433322 244678899999999887
No 91
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.05 E-value=1.9e-09 Score=130.85 Aligned_cols=93 Identities=20% Similarity=0.188 Sum_probs=71.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-----------------cc------------cchH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-----------------PA------------KESN 298 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-----------------~~------------r~~~ 298 (758)
+++==+|+|||.|||||+++.++.+.+|| ...|.-++.+-.+| ++ ....
T Consensus 41 ~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~ 120 (800)
T PRK13208 41 SIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTD 120 (800)
T ss_pred EEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHH
Confidence 44444899999999999999999999998 35677777653333 22 1344
Q ss_pred HHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 299 EFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
++.+.|.++++.||+..| ..+++++ +....+.+..+|.++|++|
T Consensus 121 ~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy 168 (800)
T PRK13208 121 EDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIY 168 (800)
T ss_pred HHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCee
Confidence 678999999999998766 5555544 6667888999999999999
No 92
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.03 E-value=1e-08 Score=125.45 Aligned_cols=93 Identities=24% Similarity=0.304 Sum_probs=72.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc--------------------------------c
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA--------------------------------K 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~--------------------------------r 295 (758)
+++==||++||.||||||++.++.+.+|| +..|.-++.+-.+|-. .
T Consensus 36 ~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~ 115 (861)
T TIGR00422 36 CIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWE 115 (861)
T ss_pred EEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHH
Confidence 44555899999999999999999999998 4568888877555510 0
Q ss_pred chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
-..+|.+.|.+.++.||+..| ..+++.+ +.+..+....+|.++|++|
T Consensus 116 ~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy 166 (861)
T TIGR00422 116 WKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIY 166 (861)
T ss_pred HHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCee
Confidence 134678999999999997765 5455544 6677889999999999999
No 93
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.7e-09 Score=109.26 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=123.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeee----ee---------------------c--------------------CC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPT----ET---------------------S--------------------GS 73 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~----~~---------------------~--------------------g~ 73 (758)
..|| ..-.||.+.|.+|+=+++|+.--+ +. . -+
T Consensus 52 YhLY--vslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 52 YHLY--VSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred EEEE--EEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 5777 666899999999999999975221 10 0 46
Q ss_pred ccEEEeCCCcEE--echHHHHHHHHHhC--------CCCCCCHHHHHHHHHHHHhccccCCh------------------
Q 043341 74 APTFSFSNGSKL--QGTYVLLRYIGRVG--------NFYGQNAYEAGEIDEWLDYTPVFSSG------------------ 125 (758)
Q Consensus 74 vP~L~~~~g~~l--~ES~aIl~yL~~~~--------~L~p~~~~era~v~~wl~~~~~~l~~------------------ 125 (758)
||+|-+..-.+| .||..|++.+...+ .|||. ..|.+++.|.+|+...+..
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 999988654444 59999999998766 68884 4689999999998877653
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccccc-----ccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDS-----LRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~-----~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..+-..|+.||+.|+.+.||+|+++|-||+.+|++|.++....-+ ......||||..|+..+-+. |+|.+..
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~--pg~~~T~ 284 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQL--PGFAETV 284 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcC--ccccccc
Confidence 566778899999999999999999999999999999987554422 22356799999999999998 9987763
No 94
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.02 E-value=6.2e-10 Score=101.48 Aligned_cols=68 Identities=16% Similarity=0.335 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
..+.+.++.||++|++++|++|+++|+|||++++.+.++.. .... ...+|+|.+|+++|.++ |+++++
T Consensus 46 ~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~k~~ 113 (114)
T cd03188 46 ERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWAPG--VGLD-LSDWPNLAAYLARVAAR--PAVQAA 113 (114)
T ss_pred HHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHHhh--cCCC-hhhChHHHHHHHHHHhC--HHhHhh
Confidence 46778889999999988999999999999999999887532 2222 45799999999999999 999876
No 95
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.6e-09 Score=102.55 Aligned_cols=143 Identities=13% Similarity=0.194 Sum_probs=108.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFY 102 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~ 102 (758)
|+|| -|..||+|.++|+++.++|+|++.... .+||+|+-+||..+.||..|++|+++.. +++
T Consensus 1 MkLY--IYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLY--IYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred Ccee--EeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 6888 788999999999999999999987432 7899999999999999999999999987 333
Q ss_pred CCCHHHHHHHHHHHHhccccCCh---------------------------------------------HHHHHHHHHHHH
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSSG---------------------------------------------SEFENACTYVDK 137 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~~---------------------------------------------~~l~~~L~~Le~ 137 (758)
- ...+..+..|+.-+...... +++...|+.|+.
T Consensus 79 t--~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~ 156 (215)
T COG2999 79 T--GKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDK 156 (215)
T ss_pred c--cCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHH
Confidence 2 22345677787655443220 566777888888
Q ss_pred hcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 138 YLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 138 ~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
.+...+=+.| .+|.-||.+|+.|+.+ ....++.| -..|..|+.+|.+.
T Consensus 157 Li~~~s~~n~-~l~~ddi~vFplLRnl-t~v~gi~w---ps~v~dy~~~msek 204 (215)
T COG2999 157 LIVGPSAVNG-ELSEDDILVFPLLRNL-TLVAGIQW---PSRVADYRDNMSEK 204 (215)
T ss_pred HhcCcchhcc-ccchhhhhhhHHhccc-eecccCCC---cHHHHHHHHHHHHh
Confidence 8776663344 6999999999999986 33334321 24689999999887
No 96
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.99 E-value=7.9e-10 Score=99.96 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccc
Q 043341 107 YEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD 169 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~ 169 (758)
.+|+++++|+.|+.+.+.+ ..+.+.+..||+.|++++|++|+++|+|||++++.+.+.. ..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~--~~ 79 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLP--AL 79 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHH--Hc
Confidence 4678888888887664442 4677788999999999999999999999999999986542 22
Q ss_pred cccccccChhHHHHHHHHHhhccchHHHH
Q 043341 170 SLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 170 ~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
+......+|++.+|+++|.++ |+|+++
T Consensus 80 ~~~~~~~~p~l~~w~~~~~~r--pa~~~~ 106 (107)
T cd03186 80 GIELPKQAKPLKDYMERVFAR--DSFQKS 106 (107)
T ss_pred CCCCcccchHHHHHHHHHHCC--HHHHHh
Confidence 322224799999999999999 999875
No 97
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.98 E-value=8.6e-09 Score=117.41 Aligned_cols=235 Identities=15% Similarity=0.190 Sum_probs=137.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccchH-------------------------
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKESN------------------------- 298 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~~~------------------------- 298 (758)
+++.-=+-+|||.+||||++..+..+.++| .+.-.||.--||.|+-|.++
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 355555666999999999999988877776 45567777778887544322
Q ss_pred -----HHHHHHHHHHHHhCCCCCCcccccCCHH--HHHHHHHHHHHh-CceeccCCchHHHHHHhc----CCC------C
Q 043341 299 -----EFVDNLLKDIETLGIKYETVTYTSDYFP--DLMEMAENLIRQ-GKAYVDDTPREQMQKERM----DGI------E 360 (758)
Q Consensus 299 -----~~~~~i~~dl~~LGi~~d~~~~~S~~~~--~~~~~~~~Li~~-G~aY~~~~~~e~~~~~~~----~~~------~ 360 (758)
.|...+.++|+.|||+++ ++++|+... .|.+.+...+++ ..+. +.+.+.+. ..| .
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~~e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~------~il~~~~~~~~~~~~~P~~pic 171 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGINPE-FIRASKQYTSGLYASQIKIALDHRKEIS------EILNEYRTSKLEENWYPISVFC 171 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEE-EEEHHHhhhcCChHHHHHHHHHhHHHHH------HHHHHhcCCccCCCceeeeeec
Confidence 345777888999999874 334443221 133333332221 1111 12222221 111 1
Q ss_pred CcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcEEEEeCCCCCccc-----CC---cc-ccccc-cc
Q 043341 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRI-----GS---KY-KVYPT-YD 430 (758)
Q Consensus 361 ~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~vl~R~~~~~~~~~-----~~---~~-~~~Pt-Y~ 430 (758)
..|.... ..++ .. + ..+.|-|+|. .+|.-+ |. +| --||+ |
T Consensus 172 ~~cGrv~-------------------~~~~--~~-----~--~~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~~RW- 221 (515)
T TIGR00467 172 ENCGRDT-------------------TTVN--NY-----D--NEYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWPARW- 221 (515)
T ss_pred CCcCccC-------------------ceEE--Ee-----c--CCceEEEEcC-CCCEEEEeecCCCcccCCCCCcHhhH-
Confidence 1222110 0000 01 1 1124667653 333211 11 34 23442 3
Q ss_pred ccccccccccCccEEeeCCCCCCch----HHHHHHHHHhCCCcce--EeeeeeeecccccccchhhhhhhhcCccCCCCC
Q 043341 431 FACPFVDAKEGITHALRSSEYHDRN----AQYYRIQEDLGVRKVH--IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDD 504 (758)
Q Consensus 431 ~a~~vdD~~~githvirg~d~~~~~----~~~~~l~~alg~~~p~--~~~~~~l~~~~~klSKR~~~~li~~g~~~gwdd 504 (758)
...|||.=--|.||+.+. .+.....++||..+|. .+++.||...|.|||||+++
T Consensus 222 -------~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn------------- 281 (515)
T TIGR00467 222 -------KIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD------------- 281 (515)
T ss_pred -------hhhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC-------------
Confidence 123344334599999744 4444445799888775 34445666667799999974
Q ss_pred CCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHH
Q 043341 505 PRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKL 544 (758)
Q Consensus 505 pr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l 544 (758)
..|++++++. ++++++|.|++.. ..+++.+||++.|
T Consensus 282 --~itl~dll~~-~~pdalR~~~l~~-~~~~~ldFd~~~l 317 (515)
T TIGR00467 282 --VISVKDVLEV-YTPEITRFLFART-KPEFHISFDLDVI 317 (515)
T ss_pred --CccHHHHHHH-cCHHHHHHHHhcc-CCCCCCcCCHHHH
Confidence 4599999998 8999999987765 8899999999977
No 98
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.97 E-value=4.3e-09 Score=102.89 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=111.3
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC--CCCCC--CH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG--NFYGQ--NA 106 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~--~L~p~--~~ 106 (758)
...+++++++.+.|.++|++|.+..+ |++|.|.. ||..++||..|-++|.+.+ +-++. ++
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~-d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKF-DEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEe-CCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 35688999999999999999988654 99999998 8899999999999999998 22332 33
Q ss_pred HHHH----HHHHHHHhcccc------CChHHHHHHHHHHHHhccc---CCcccCCCCCHhHHHHHHHHhhhhccc---cc
Q 043341 107 YEAG----EIDEWLDYTPVF------SSGSEFENACTYVDKYLER---RTFVVGHSLSIVDIAIWSALAGTGQRW---DS 170 (758)
Q Consensus 107 ~era----~v~~wl~~~~~~------l~~~~l~~~L~~Le~~L~~---~~flvG~~lTlADi~l~~~L~~l~~~~---~~ 170 (758)
+... ...++..|+-.. .....+-+.|..||++|+. ++||.|+++|+||+.+.+-|+.+.... ..
T Consensus 97 E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~ 176 (221)
T KOG1422|consen 97 ESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKN 176 (221)
T ss_pred HHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcC
Confidence 3222 222333442111 1124677788999999985 699999999999999999999873322 23
Q ss_pred ccccccChhHHHHHHHHHhhccchHHH
Q 043341 171 LRKSKKYQNLVRWFNSLSAEYSDSLDE 197 (758)
Q Consensus 171 ~~~~~~~P~L~rW~~~i~~~~~p~~~~ 197 (758)
++.-+.+++|.||+..+.++ .+|..
T Consensus 177 ~~IP~~lt~V~rYl~~~ya~--d~F~~ 201 (221)
T KOG1422|consen 177 FEIPASLTGVWRYLKNAYAR--DEFTN 201 (221)
T ss_pred CCCchhhhHHHHHHHHHHhH--HHhhc
Confidence 33446789999999999998 66654
No 99
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.97 E-value=4.5e-09 Score=106.20 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=112.8
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHhCCCCC-CCHHHHHHHHHHH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYG-QNAYEAGEIDEWL 116 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L~p-~~~~era~v~~wl 116 (758)
-..||+|+++...+...++|||.+.. |++|-+++ ||..+.+|.-|...|.+.+++-- -++.++|+..+..
T Consensus 58 PnLSPfClKvEt~lR~~~IpYE~~~~~~~~rSr~G~lPFIEL-NGe~iaDS~~I~~~L~~hf~~~~~L~~e~~a~s~Al~ 136 (281)
T KOG4244|consen 58 PNLSPFCLKVETFLRAYDIPYEIVDCSLKRRSRNGTLPFIEL-NGEHIADSDLIEDRLRKHFKIPDDLSAEQRAQSRALS 136 (281)
T ss_pred CCCChHHHHHHHHHHHhCCCceeccccceeeccCCCcceEEe-CCeeccccHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998653 99999999 99999999999999998872211 3466777666554
Q ss_pred HhccccCC--------------------------------------------------------h----HHHHHHHHHHH
Q 043341 117 DYTPVFSS--------------------------------------------------------G----SEFENACTYVD 136 (758)
Q Consensus 117 ~~~~~~l~--------------------------------------------------------~----~~l~~~L~~Le 136 (758)
.+++..+. . +.+.+-|+.++
T Consensus 137 rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~ 216 (281)
T KOG4244|consen 137 RMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAIS 216 (281)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHH
Confidence 44332211 0 33466678899
Q ss_pred HhcccCCcccCCCCCHhHHHHHHHHhhhhc-cccccc--ccccChhHHHHHHHHHhhccc
Q 043341 137 KYLERRTFVVGHSLSIVDIAIWSALAGTGQ-RWDSLR--KSKKYQNLVRWFNSLSAEYSD 193 (758)
Q Consensus 137 ~~L~~~~flvG~~lTlADi~l~~~L~~l~~-~~~~~~--~~~~~P~L~rW~~~i~~~~~p 193 (758)
..|.+++||.|+++|-+|+.+|+.|..+.- ...... ....+|||..|.+||.+.+.|
T Consensus 217 ~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~~~yP 276 (281)
T KOG4244|consen 217 DYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRKEIYP 276 (281)
T ss_pred HHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHHHhCC
Confidence 999999999999999999999999988521 111111 245799999999999998665
No 100
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.96 E-value=1.4e-09 Score=99.92 Aligned_cols=70 Identities=13% Similarity=0.261 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEV 198 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~ 198 (758)
..+.+.++.||.+|+.++|++|+++|+|||++++.+.++... ........+|+|.+|+++|.++ |+++++
T Consensus 48 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~--p~~~~~ 117 (118)
T cd03187 48 EKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLMAT-PFAKLFDSRPHVKAWWEDISAR--PAWKKV 117 (118)
T ss_pred HHHHHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHHHc-cchhhhhcCchHHHHHHHHHhC--HHHHhh
Confidence 467788899999999899999999999999999998876321 1111246799999999999999 999875
No 101
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.95 E-value=3.6e-08 Score=120.69 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=71.8
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc--------------------c------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA--------------------K------------ 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~--------------------r------------ 295 (758)
+++==||++||.||||||++.++-+.++| +..|.-++.+-.+|-. .
T Consensus 39 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~ 118 (874)
T PRK05729 39 SIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWE 118 (874)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHH
Confidence 44444799999999999999999999998 4567777777655521 0
Q ss_pred chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
-..++.+.|.+.++.||+..| ..+++.+ +......+..+|.++|++|
T Consensus 119 w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy 169 (874)
T PRK05729 119 WKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIY 169 (874)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEe
Confidence 034577999999999997755 5555544 5667889999999999999
No 102
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.94 E-value=1.1e-09 Score=99.74 Aligned_cols=70 Identities=23% Similarity=0.401 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..+...++.||+.|++++|++|+++|+|||++++.+.+.... .......+|++.+|+++|.++ |++++++
T Consensus 43 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~--~~~~~~~~p~l~~w~~~~~~~--p~~~~~~ 112 (113)
T cd03178 43 NEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLEWI--GIDDLDDFPNVKRWLDRIAAR--PAVQRGL 112 (113)
T ss_pred HHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHHhc--cccchhhchHHHHHHHHHhhC--HHHHHhc
Confidence 567788899999999899999999999999999999886322 222256799999999999999 9999874
No 103
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=98.94 E-value=1.7e-09 Score=103.36 Aligned_cols=93 Identities=22% Similarity=0.326 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhccccCCh------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccc
Q 043341 107 YEAGEIDEWLDYTPVFSSG------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW 168 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~ 168 (758)
..|+++++|++|....+.+ ..+...|+.||++|++++|++|+++|+|||++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 4578889998887765542 5677788999999999999999999999999999987642111
Q ss_pred ---c--cccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 169 ---D--SLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 169 ---~--~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
. +......||+|.+|+++|.++ |+++++...
T Consensus 83 ~~~~~~~~~~~~~~P~L~~w~~r~~~~--P~~k~~~~~ 118 (142)
T cd03190 83 VQHFKCNLKRIRDYPNLWNYLRRLYQN--PGVAETTNF 118 (142)
T ss_pred hhhcccccchhhhCchHHHHHHHHhcC--chHhhhcCH
Confidence 0 111245899999999999999 999988654
No 104
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.91 E-value=1.9e-09 Score=99.81 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+.+...++.||+.|+.++|++|+++|+|||++++.+.+.............+|++.+|++++.++ |+|++++.+.
T Consensus 43 ~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~~ 117 (123)
T cd03181 43 EELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQ--PIFKAVFGEV 117 (123)
T ss_pred HHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcC--HHHHHHcCCC
Confidence 56778899999999999999999999999999999887522222222246799999999999999 9999987664
No 105
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.90 E-value=4.1e-09 Score=97.07 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHhccccCCh--------------------------------HHHHHHHHHHHHhcccCCcccCCCC
Q 043341 103 GQNAYEAGEIDEWLDYTPVFSSG--------------------------------SEFENACTYVDKYLERRTFVVGHSL 150 (758)
Q Consensus 103 p~~~~era~v~~wl~~~~~~l~~--------------------------------~~l~~~L~~Le~~L~~~~flvG~~l 150 (758)
|.++.+|+++++|+.|..+.+.+ ..+.+.++.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 56778888888888776554331 2466778889999999999999999
Q ss_pred CHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 151 TlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
|+|||++++.+.++... .. ....+|+|.+|+++|+++
T Consensus 82 t~ADi~l~~~~~~~~~~--~~-~~~~~p~l~~w~~~~~~~ 118 (119)
T cd03189 82 TAADIMMSFPLEAALAR--GP-LLEKYPNIAAYLERIEAR 118 (119)
T ss_pred CHHHHHHHHHHHHHHHc--Cc-ccccCchHHHHHHHHhcC
Confidence 99999999888876322 22 257899999999999987
No 106
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.90 E-value=4.5e-09 Score=89.33 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=52.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeC-CCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFS-NGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~-~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++.|++|++++++|.++|++|+.+.+ |++|+|+++ +|..|+||.+|++||++.+
T Consensus 2 ~~Ly--~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELY--EFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEe--cCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 6899 889999999999999999999988643 899999885 5789999999999999864
No 107
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.89 E-value=2e-09 Score=100.10 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhccccCCh-----------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcc--
Q 043341 107 YEAGEIDEWLDYTPVFSSG-----------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR-- 167 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~-----------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~-- 167 (758)
.+|+++++|+.|..+.+.+ ..+...++.||+.|+.++|++|+++|+|||++++.+.++...
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3677788887776544331 467788999999999899999999999999999998876221
Q ss_pred ccccc--ccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 168 WDSLR--KSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 168 ~~~~~--~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
..+.. ....+|++.+|+++|.++ |++++++..
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~--p~~~~~~~~ 115 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLEL--EAVKEVLPD 115 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhc--cHHHHhCCC
Confidence 11222 246799999999999999 999987554
No 108
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.89 E-value=4.2e-09 Score=97.09 Aligned_cols=70 Identities=24% Similarity=0.497 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVT 199 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l 199 (758)
..+.+.++.||++|++++|++|+++|+||+++++.+.++.. ....+ ...+|+|.+|+++|.++ |+|++..
T Consensus 41 ~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~-~~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~ 110 (118)
T cd03177 41 DKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA-LLPLD-LSKYPNVRAWLERLKAL--PPYEEAN 110 (118)
T ss_pred HHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH-hcCCC-hhhCchHHHHHHHHHcc--cchHHHH
Confidence 56788899999999988999999999999999999988632 12222 45799999999999999 9999865
No 109
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.88 E-value=3.6e-09 Score=97.84 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 127 EFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 127 ~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
.+...|..||++|++ .+||+|+++|+|||++++.+.++.. .+.+ ...+|+|.+|+++|.++ |+|++++.
T Consensus 48 ~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~--~~~~-~~~~p~l~~w~~~~~~~--p~~~~~~~ 118 (121)
T cd03191 48 WIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARR--FGVD-LSPYPTIARINEACLEL--PAFQAAHP 118 (121)
T ss_pred HHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHH--hCCC-cccCcHHHHHHHHHHhC--hhHHHhCc
Confidence 457788899999984 4899999999999999999887522 2332 47899999999999999 99998753
No 110
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.87 E-value=4.5e-09 Score=97.98 Aligned_cols=73 Identities=16% Similarity=0.335 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHh-cccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHh--hccchHHHHHHhh
Q 043341 126 SEFENACTYVDKY-LERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA--EYSDSLDEVTATY 202 (758)
Q Consensus 126 ~~l~~~L~~Le~~-L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~--~~~p~~~~~l~~~ 202 (758)
+.+.+.++.||+. ++.++|++|+++|+|||++++.+.+.. ..+.+..+.+|+|.+|+++|.+ + |+++++++.+
T Consensus 48 ~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~--~~~~~~~~~~p~l~~w~~~~~~~~~--p~~~~~~~~~ 123 (126)
T cd03183 48 ENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPE--AAGYDVFEGRPKLAAWRKRVKEAGN--PLFDEAHKII 123 (126)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHH--hcCCcccccCchHHHHHHHHHHhcc--hhHHHHHHHH
Confidence 4678889999997 555789999999999999999887652 2233335789999999999999 9 9999988764
No 111
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.87 E-value=4.4e-09 Score=97.44 Aligned_cols=93 Identities=22% Similarity=0.344 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhccccC-----------ChHHHHHHHHHHHHhcc---cCCcccCCCCCHhHHHHHHHHhhhhc---c
Q 043341 105 NAYEAGEIDEWLDYTPVFS-----------SGSEFENACTYVDKYLE---RRTFVVGHSLSIVDIAIWSALAGTGQ---R 167 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l-----------~~~~l~~~L~~Le~~L~---~~~flvG~~lTlADi~l~~~L~~l~~---~ 167 (758)
|+.+|+++++|+.|..... ..+.+...++.||+.|+ +++|++| ++|+|||++++.+.++.. .
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~ 79 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDPSAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSE 79 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 4678999999988822111 02566788899999997 4799999 999999999999876422 1
Q ss_pred cccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 168 WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 168 ~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
..+......+|+|.+|+++|.++ |+++++..
T Consensus 80 ~~~~~~~~~~P~l~~W~~~~~~r--p~~~~~~~ 110 (120)
T cd03203 80 LFNYDITEGRPNLAAWIEEMNKI--EAYTQTKQ 110 (120)
T ss_pred hcCccccccCcHHHHHHHHHhcc--hHHHhHcC
Confidence 13333336899999999999999 99988754
No 112
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.86 E-value=4.8e-09 Score=96.23 Aligned_cols=87 Identities=21% Similarity=0.386 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhccccCC------------------------------hHHHHHHHHHHHHhcccCCcccCCCCCHhH
Q 043341 105 NAYEAGEIDEWLDYTPVFSS------------------------------GSEFENACTYVDKYLERRTFVVGHSLSIVD 154 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l~------------------------------~~~l~~~L~~Le~~L~~~~flvG~~lTlAD 154 (758)
|+.+|+++++|+.|+.+.+. ...+...+..||+.|+.++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 45678888888887543321 055777889999999988999999999999
Q ss_pred HHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 155 IAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 155 i~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
|++++.+.++.. .+......+|+|.+|++++.++ |++
T Consensus 81 i~l~~~~~~~~~--~~~~~~~~~p~l~~w~~~~~~~--p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKV--VKLRVPEELTHLRAWYDRMAAR--PSA 117 (117)
T ss_pred HHHHHHhHHHHh--cCCCCccccHHHHHHHHHHHhc--cCC
Confidence 999999987632 2333246899999999999999 863
No 113
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.83 E-value=6e-09 Score=86.96 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=51.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec--------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS--------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~--------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| ++..|++++++|++|.++|++|+.+.+ +++|+|++++|..|+||.+|++||++
T Consensus 1 ~~Ly--~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLY--IYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceE--ecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5788 889999999999999999999997543 89999998668999999999999974
No 114
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.80 E-value=5.1e-09 Score=93.43 Aligned_cols=81 Identities=35% Similarity=0.650 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcc---------------ccCChHHHHHHHHHHHHhcccCC--cccCCCCCHhHHHHHHHHhhhhcc
Q 043341 105 NAYEAGEIDEWLDYTP---------------VFSSGSEFENACTYVDKYLERRT--FVVGHSLSIVDIAIWSALAGTGQR 167 (758)
Q Consensus 105 ~~~era~v~~wl~~~~---------------~~l~~~~l~~~L~~Le~~L~~~~--flvG~~lTlADi~l~~~L~~l~~~ 167 (758)
++..++++++|+.|.. .....+.+...++.||++|+.++ ||+|++||+||+++|+.|..+.
T Consensus 2 ~~~~~a~i~~W~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~-- 79 (99)
T PF14497_consen 2 DPYWRALIDRWLDFSVAFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLR-- 79 (99)
T ss_dssp --TTHHHHHHHHH-GHCCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHhccchhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHh--
Confidence 4557889999999651 01113788999999999999988 9999999999999999997642
Q ss_pred cccccccccChhHHHHHHHHHh
Q 043341 168 WDSLRKSKKYQNLVRWFNSLSA 189 (758)
Q Consensus 168 ~~~~~~~~~~P~L~rW~~~i~~ 189 (758)
+...+ ..+|||.+|+++|++
T Consensus 80 ~~~~~--~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 80 WADFP--KDYPNLVRWYERIEE 99 (99)
T ss_dssp CCHHT--TTCHHHHHHHHHHHT
T ss_pred hcccc--cccHHHHHHHHhhcC
Confidence 22111 589999999999974
No 115
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.80 E-value=5.9e-09 Score=93.52 Aligned_cols=69 Identities=10% Similarity=0.229 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
..+...++.||++|++++|++|+++|+|||++++.+.+.... + ....+|+|.+|+++|.++ |+++++++
T Consensus 33 ~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~--~--~~~~~p~l~~w~~~~~~~--p~~~~~~~ 101 (103)
T cd03207 33 GSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQF--G--LLPERPAFDAYIARITDR--PAFQRAAA 101 (103)
T ss_pred hhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHc--C--CCCCChHHHHHHHHHHcC--HHHHHHhc
Confidence 568899999999999999999999999999999999886322 2 246899999999999999 99998865
No 116
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=98.80 E-value=1.5e-08 Score=86.58 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=51.7
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhCCC
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF 101 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~~L 101 (758)
+|| +++.++++++++++|+++|++|+.+.+ |++|+|++ ||.+|+||.||++||+++++|
T Consensus 3 ~Ly--~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~-~g~~l~ES~AI~~YL~~~~~~ 78 (79)
T cd03077 3 VLH--YFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEI-DGMKLVQTRAILNYIAGKYNL 78 (79)
T ss_pred EEE--EeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEE-CCEEEeeHHHHHHHHHHHcCC
Confidence 677 888889999999999999999986432 79999987 889999999999999998754
No 117
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.79 E-value=1.1e-08 Score=92.45 Aligned_cols=65 Identities=17% Similarity=0.350 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
+.+.+.++.||+.|.+++|++|+++|+|||++++.+..... ... ....+|+|.+|+++|.++ |+|
T Consensus 46 ~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~~--~~~-~~~~~p~l~~~~~~~~~~--p~~ 110 (110)
T cd03180 46 AAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWFE--LPI-ERPPLPHLERWYARLRAR--PAF 110 (110)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHHH--ccc-ccccCchHHHHHHHHHhC--CCC
Confidence 46788899999999989999999999999999988753211 112 257899999999999999 864
No 118
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.78 E-value=1.7e-08 Score=84.40 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=51.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +.+.++++.+++++++++|++|+.+.+ |++|+|+. +|..|+||.||++||++++
T Consensus 1 ~~ly--~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLY--SGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVD-RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEE--ECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEE-CCEEEEcHHHHHHHHHhhC
Confidence 5788 888899999999999999999998543 99999987 7789999999999999864
No 119
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.77 E-value=1.8e-08 Score=85.25 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=51.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| +++.++++++++++++++|++|+.+.+ |++|+|++ +|.+|+||.||++||++++
T Consensus 1 ~~ly--~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLY--YDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD-GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEe--eCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE-CCEEEEcHHHHHHHHHhhC
Confidence 4688 888999999999999999999987432 99999987 7899999999999999864
No 120
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.77 E-value=2.1e-08 Score=86.00 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=50.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCC--CcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSN--GSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~--g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +++ ++++++++++|+++|++|+.+.+ |++|+|++++ |..|+||.||++||+++
T Consensus 2 ~~Ly--~~~-~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~ 78 (81)
T cd03048 2 ITLY--THG-TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEK 78 (81)
T ss_pred eEEE--eCC-CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHH
Confidence 6888 665 59999999999999999986432 8999999854 89999999999999987
Q ss_pred C
Q 043341 99 G 99 (758)
Q Consensus 99 ~ 99 (758)
+
T Consensus 79 ~ 79 (81)
T cd03048 79 Y 79 (81)
T ss_pred h
Confidence 5
No 121
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.77 E-value=1.9e-08 Score=84.69 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=51.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| ++..|+++++++++++++|++|+.+.+ |++|+|++ +|.+|+||.+|++||++.+
T Consensus 1 ~~Ly--~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~-~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLL--GAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLH-NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEE--ECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEE-CCEEeehHHHHHHHHHhhC
Confidence 5888 888999999999999999999987432 79999997 7899999999999998763
No 122
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.77 E-value=1.6e-08 Score=84.93 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=49.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| +++.++++++++++|+++|++|+.+.+ |++|+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly--~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLY--YLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD-NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEE--eCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE-CCEEEEcHHHHHHHHhC
Confidence 5788 888999999999999999999987432 89999987 78999999999999974
No 123
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.77 E-value=1.6e-08 Score=85.02 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=50.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| ++..++++++++++|+++|++|+...+ |++|+|++ +|..|+||.||++||++
T Consensus 2 ~~Ly--~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLT--YFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKD-GDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEE--EeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEE-CCEEEEcHHHHHHHHhc
Confidence 6898 888899999999999999999987542 99999987 78999999999999976
No 124
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.76 E-value=1.1e-08 Score=86.44 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=51.4
Q ss_pred EEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 41 IKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 41 L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|| ++..|++|++++++++++|++|+.+.+ |++|+|+. ||.+|+||.+|++||++.+
T Consensus 1 Ly--~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~-~g~~l~dS~~I~~yL~~~~ 71 (75)
T PF13417_consen 1 LY--GFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVD-DGEVLTDSAAIIEYLEERY 71 (75)
T ss_dssp EE--EETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEE-TTEEEESHHHHHHHHHHHS
T ss_pred CC--CcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEE-CCEEEeCHHHHHHHHHHHc
Confidence 56 889999999999999999999998654 99999995 7999999999999999976
No 125
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.75 E-value=1.7e-08 Score=84.91 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=48.2
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
+|| ++..|+++++++++|+++|++|+...+ |+||+|++ ||.+|+||.||++||+
T Consensus 2 ~ly--~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~-~g~~l~Es~aI~~yLe 73 (73)
T cd03052 2 VLY--HWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH-GDNIICDPTQIIDYLE 73 (73)
T ss_pred EEe--cCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 677 888888999999999999999988532 99999986 8999999999999984
No 126
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.8e-08 Score=98.00 Aligned_cols=155 Identities=13% Similarity=0.188 Sum_probs=116.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCC----eeee------------e-----------------c--------------
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGIT----IPTE------------T-----------------S-------------- 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~----~~~~------------~-----------------~-------------- 71 (758)
..|| ..-++|++.|.+++.+++|++ +..+ . .
T Consensus 38 yhLY--vslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 38 YHLY--VSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred EEEE--EeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 5677 566899999999999999974 1110 0 0
Q ss_pred ------CCccEEEeCCCcEE--echHHHHHHHHH---hC---------CCCCCCHHHHHHHHHHHHhccccCCh------
Q 043341 72 ------GSAPTFSFSNGSKL--QGTYVLLRYIGR---VG---------NFYGQNAYEAGEIDEWLDYTPVFSSG------ 125 (758)
Q Consensus 72 ------g~vP~L~~~~g~~l--~ES~aIl~yL~~---~~---------~L~p~~~~era~v~~wl~~~~~~l~~------ 125 (758)
-+||+|-+-.-.+| .||..|++.+.. .+ .|+| +..++++++|.+|....+..
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecccccCceeeec
Confidence 47999987533333 699999999983 32 6777 44689999999998877652
Q ss_pred ------------HHHHHHHHHHHHhcccCC--cccCCCCCHhHHHHHHHHhhhhcccccc-----c-ccccChhHHHHHH
Q 043341 126 ------------SEFENACTYVDKYLERRT--FVVGHSLSIVDIAIWSALAGTGQRWDSL-----R-KSKKYQNLVRWFN 185 (758)
Q Consensus 126 ------------~~l~~~L~~Le~~L~~~~--flvG~~lTlADi~l~~~L~~l~~~~~~~-----~-~~~~~P~L~rW~~ 185 (758)
.++-+.|+.+|+.|+.+- |++|++||.|||.+|+++-++.....-. . ....||+|..|..
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk 273 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLK 273 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHH
Confidence 567778899999999876 9999999999999999988764332111 1 2458999999999
Q ss_pred HHHhhccchHHHH
Q 043341 186 SLSAEYSDSLDEV 198 (758)
Q Consensus 186 ~i~~~~~p~~~~~ 198 (758)
.+-..+ |+|+..
T Consensus 274 ~iY~~~-~~~~~T 285 (319)
T KOG2903|consen 274 NIYWNI-PGFSST 285 (319)
T ss_pred HHHhhc-cchhhc
Confidence 998843 777654
No 127
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.74 E-value=2e-08 Score=83.95 Aligned_cols=56 Identities=23% Similarity=0.445 Sum_probs=49.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +++.|+++++++++|+++|++|+...+ |++|+|+++||..|+||.||++||+
T Consensus 1 ~~Ly--~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLY--DSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEE--eCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 4788 888899999999999999999987432 8999999878899999999999984
No 128
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.73 E-value=2.8e-08 Score=84.00 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=50.7
Q ss_pred eEEEecccC-------CCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFP-------ADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~-------~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
++|| .+. .|+++++++++|+++|++|+...+ |++|+|++ +|.+|+||.+|++||++++
T Consensus 2 ~~L~--~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~~~~p~g~vPvl~~-~g~~l~eS~~I~~yL~~~~ 74 (75)
T cd03080 2 ITLY--QFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLAKRSPKGKLPFIEL-NGEKIADSELIIDHLEEKY 74 (75)
T ss_pred EEEE--ecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcccCCCCCCCCEEEE-CCEEEcCHHHHHHHHHHHc
Confidence 5777 554 578999999999999999997654 99999998 7899999999999999875
No 129
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.73 E-value=2.9e-08 Score=83.89 Aligned_cols=56 Identities=23% Similarity=0.451 Sum_probs=50.1
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
+|| ++..++++++++++++++|++|+.+.+ |++|+|++++|.+|+||.||++||++
T Consensus 2 ~Ly--~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLY--TYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEe--cCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 577 888889999999999999999987532 99999998778999999999999986
No 130
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.72 E-value=3.2e-08 Score=83.87 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=49.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++ ++++++++++|+++|++|+...+ |++|+|+.++|..|+||.||++||++.+
T Consensus 1 ~~Ly--~~~-~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~ 76 (77)
T cd03057 1 MKLY--YSP-GACSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLH 76 (77)
T ss_pred CEEE--eCC-CCchHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhC
Confidence 4777 665 45788999999999999987432 9999999866999999999999999864
No 131
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.72 E-value=3.4e-08 Score=83.46 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=50.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| +++.|+++++++++++++|++|+...+ |++|+|+. +|..|+||.||++||+++
T Consensus 2 ~~Ly--~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~-~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLY--GAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED-GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEE--eCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE-CCEEEEcHHHHHHHHhhC
Confidence 6888 888899999999999999999987432 99999987 789999999999999863
No 132
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.70 E-value=2.8e-08 Score=83.12 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=49.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
|+|| ++..++++++++++|+++|++|+.+.. |++|+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly--~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLT--YFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEI-DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEE--EEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEE-CCEEEEecHHHHHHhhC
Confidence 4788 888899999999999999999988542 99999987 78999999999999964
No 133
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=98.70 E-value=2.8e-08 Score=92.48 Aligned_cols=92 Identities=16% Similarity=0.266 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccccCC---------------hHHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHhhhhccccc
Q 043341 108 EAGEIDEWLDYTPVFSS---------------GSEFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDS 170 (758)
Q Consensus 108 era~v~~wl~~~~~~l~---------------~~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~~l~~~~~~ 170 (758)
+||+.+.|+.+++..+. .+.+...++.||+.|++ ++|++|+++|+|||++++.+.++......
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~ 81 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLL 81 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhh
Confidence 46777777777643321 26778889999999985 79999999999999999998775221111
Q ss_pred ---ccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 171 ---LRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 171 ---~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
......+|+|.+|+++|.++ |+++.++..
T Consensus 82 ~~~~~~~~~~p~l~~w~~r~~~~--p~v~~~~~~ 113 (124)
T cd03184 82 LGYEFPLDRFPKLKKWMDAMKED--PAVQAFYTD 113 (124)
T ss_pred ccccCCcccChHHHHHHHHhccC--hHHHHHhCC
Confidence 11257899999999999999 999988653
No 134
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.70 E-value=2.8e-08 Score=87.55 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
..+.+.|+.+|..|++++|++|+++|+||+++++.+.++........ .++||+|.+|+++|.++
T Consensus 31 ~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~-~~~~P~l~~w~~~~~~~ 94 (95)
T PF00043_consen 31 AKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFL-FEKFPKLKKWYERMFAR 94 (95)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTT-HTTSHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcc-cccCHHHHHHHHHHHcC
Confidence 46788999999999999999999999999999999998633222221 38999999999999988
No 135
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.69 E-value=4.1e-08 Score=81.98 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=48.9
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+|| ++..|+++++++++|+++|++|+.+.+ |+||+|+++||..|+||.+|++|+
T Consensus 2 ~ly--~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILY--SFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEE--ecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 577 788899999999999999999987643 999999987799999999999997
No 136
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=98.69 E-value=5e-08 Score=82.72 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
....++.+++++|+++|++|+...+ |++|+|++++|.+|+||.||++||++
T Consensus 7 ~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 7 NGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp SSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3444999999999999999998642 89999999559999999999999985
No 137
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.69 E-value=3.5e-08 Score=92.63 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhccc----------------CCcccCCCCCHhHHHHHHHHhhhhccc---ccccccccChhHHHHHHH
Q 043341 126 SEFENACTYVDKYLER----------------RTFVVGHSLSIVDIAIWSALAGTGQRW---DSLRKSKKYQNLVRWFNS 186 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~----------------~~flvG~~lTlADi~l~~~L~~l~~~~---~~~~~~~~~P~L~rW~~~ 186 (758)
+.+...|+.||++|++ ++|++|+++|+|||++++.+.++.... .+......+|+|.+|+++
T Consensus 32 ~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~aw~~r 111 (134)
T cd03198 32 KGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWRYLKN 111 (134)
T ss_pred HHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHHHHHH
Confidence 6788899999999987 689999999999999999988753211 233324789999999999
Q ss_pred HHhhccchHHHHH
Q 043341 187 LSAEYSDSLDEVT 199 (758)
Q Consensus 187 i~~~~~p~~~~~l 199 (758)
|.++ |+|++++
T Consensus 112 i~aR--Psfk~t~ 122 (134)
T cd03198 112 AYQR--EEFTNTC 122 (134)
T ss_pred HHCC--HHHHHHc
Confidence 9999 9998875
No 138
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.68 E-value=3.5e-08 Score=88.47 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhccccCCh--------------------------HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 108 EAGEIDEWLDYTPVFSSG--------------------------SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 108 era~v~~wl~~~~~~l~~--------------------------~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+|+++++|+.|..+.+.+ ..+...++.||+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 467788888776554331 567788999999999889999999999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHH
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSL 187 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i 187 (758)
.++.. .... ...+|++.+|++++
T Consensus 82 ~~~~~--~~~~-~~~~p~l~~~~~~~ 104 (105)
T cd03179 82 HVADE--GGFD-LADYPAIRAWLARI 104 (105)
T ss_pred Hhccc--cCCC-hHhCccHHHHHHhh
Confidence 88632 2232 56799999999987
No 139
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.68 E-value=2.4e-08 Score=89.19 Aligned_cols=65 Identities=17% Similarity=0.386 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL 195 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~ 195 (758)
+.+...++.||+.|++++|++|+++|+|||++++.+.+... ... ....+|+|.+|+++|.++ |+|
T Consensus 36 ~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~--~~~-~~~~~p~l~~~~~~~~~~--p~~ 100 (100)
T cd03206 36 ARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE--GGV-DLEDYPAIRRWLARIEAL--PGF 100 (100)
T ss_pred HHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc--cCC-ChhhCcHHHHHHHHHHhC--cCC
Confidence 57888999999999999999999999999999999876422 222 246899999999999999 864
No 140
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.67 E-value=4.6e-08 Score=82.00 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=49.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHh--cCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKL--AGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~--~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| ++..|++++++++++++ +|++|+.+.+ |++|+|+.+||..|+||.||++||+
T Consensus 1 ~~Ly--~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLL--YSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEe--cCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 4788 88899999999999999 8899887432 9999999778999999999999984
No 141
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.67 E-value=4.6e-08 Score=82.07 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=48.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| ++..|+++++++++|+++|++|+.+.+ |++|+|++ +|..|+||.||++||+
T Consensus 1 ~~l~--~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~-~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIW--GRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED-GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEE--ecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE-CCEEEECHHHHHHHhC
Confidence 4788 888999999999999999999987432 99999987 7889999999999984
No 142
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.65 E-value=7.5e-08 Score=81.62 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=52.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------CCccEEEeC---CCcEEechHHHHHHHHHh
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------GSAPTFSFS---NGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------g~vP~L~~~---~g~~l~ES~aIl~yL~~~ 98 (758)
|+|| ++..|++|++++++|.++|++|+...+ +++|+|+++ +|.+|+||.+|++||++.
T Consensus 2 i~Ly--~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 2 ITLY--QYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred EEEE--EcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 5888 888999999999999999999998543 899999986 488999999999999875
No 143
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.65 E-value=5.5e-08 Score=81.27 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=48.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| ++..++++++++++|+++|++|+.+.+ |++|+|++ +|..|+||.||++||+
T Consensus 1 ~~L~--~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILY--SYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI-DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEe--cCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 5788 888999999999999999999987432 89999987 6889999999999984
No 144
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.63 E-value=6.9e-08 Score=89.47 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
..+.+.+..||.+|++++|++|+++|+||+++++.+.++.... ......||+|.+|+++|.++ |++++++++
T Consensus 38 ~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~--~~~~~~~P~l~~~~~rv~~~--p~vk~~~~~ 109 (121)
T cd03209 38 AKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFE--PDCLDAFPNLKDFLERFEAL--PKISAYMKS 109 (121)
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhC--ccccccChHHHHHHHHHHHC--HHHHHHHhc
Confidence 4678899999999998999999999999999999988863211 12256899999999999999 999998765
No 145
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.62 E-value=7.9e-08 Score=80.28 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=49.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +++.|+++.+++++|+++|++|+...+ |++|+|++ +|..|+||.||++||+
T Consensus 1 ~~Ly--~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLY--GFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL-DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEE--eCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 4788 888999999999999999999987432 89999998 6899999999999984
No 146
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.62 E-value=6.6e-08 Score=80.07 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~ 186 (758)
+.+.+.++.||.+|+.++|++|+++|+||+++++.+.++............+|+|.+|+++
T Consensus 9 ~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 9 AQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 4678899999999999999999999999999999999985443333446899999999985
No 147
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.60 E-value=1e-07 Score=83.43 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=50.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +...|+++++++++|+++|++|+.+.+ +++|+|++++|..|+||.||++||+
T Consensus 19 ~~Ly--~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 19 IRLY--SMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred EEEE--eCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 7998 888999999999999999999987543 8999999866899999999999984
No 148
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.60 E-value=1.2e-07 Score=79.97 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=48.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
|+|| +++ .+++.+++++|+++|++|+.+.+ +++|+|+. +|..|+||.||++||++.+
T Consensus 1 ~~l~--~~~-~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~g~~l~es~aI~~yL~~~~ 75 (76)
T cd03046 1 ITLY--HLP-RSRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD-GDLVLTESAAIILYLAEKY 75 (76)
T ss_pred CEEE--eCC-CCChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE-CCEEEEcHHHHHHHHHHhC
Confidence 4677 554 57899999999999999987432 89999986 7899999999999999864
No 149
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=98.59 E-value=1e-07 Score=82.05 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=49.5
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+|| |+..++++++++++++++|++|+.+.+ |+||+|++ ||.+|+||.||++||
T Consensus 2 ~l~--y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~-~g~~l~ES~AIl~YL 78 (82)
T cd03075 2 TLG--YWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID-GDVKLTQSNAILRYI 78 (82)
T ss_pred EEE--EeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE-CCEEEeehHHHHHHH
Confidence 577 888899999999999999999875321 69999987 889999999999999
Q ss_pred HHhC
Q 043341 96 GRVG 99 (758)
Q Consensus 96 ~~~~ 99 (758)
++++
T Consensus 79 a~~~ 82 (82)
T cd03075 79 ARKH 82 (82)
T ss_pred hhcC
Confidence 9864
No 150
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.2e-07 Score=89.10 Aligned_cols=144 Identities=11% Similarity=0.248 Sum_probs=113.9
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------CCccEEEeCCCcEEechHHHHHHHHHhC-CCC-CCCHHHHHHHHH
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------GSAPTFSFSNGSKLQGTYVLLRYIGRVG-NFY-GQNAYEAGEIDE 114 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------g~vP~L~~~~g~~l~ES~aIl~yL~~~~-~L~-p~~~~era~v~~ 114 (758)
.+....|.+|...|..+++||.++.- |++|.|.+ |.++++|-.+|..+...+. .|- .-+..+++.++.
T Consensus 31 l~d~ascLAVqtfLrMcnLPf~v~~~~NaefmSP~G~vPllr~-g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra 109 (257)
T KOG3027|consen 31 LPDNASCLAVQTFLRMCNLPFNVRQRANAEFMSPGGKVPLLRI-GKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRA 109 (257)
T ss_pred cccchhHHHHHHHHHHcCCCceeeecCCccccCCCCCCceeee-cchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 45788899999999999999998542 99999999 7888999999999998886 231 235567788887
Q ss_pred HHHhccccCC-----------------------------------------------------------hHHHHHHHHHH
Q 043341 115 WLDYTPVFSS-----------------------------------------------------------GSEFENACTYV 135 (758)
Q Consensus 115 wl~~~~~~l~-----------------------------------------------------------~~~l~~~L~~L 135 (758)
.+++....+. -+++.+.++.|
T Consensus 110 ~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aL 189 (257)
T KOG3027|consen 110 YVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRAL 189 (257)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHH
Confidence 7765554322 06778889999
Q ss_pred HHhcccCCcccCCCCCHhHHHHHHHHhhhhccc-cc---ccccccChhHHHHHHHHHhh
Q 043341 136 DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW-DS---LRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 136 e~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~-~~---~~~~~~~P~L~rW~~~i~~~ 190 (758)
...|+.++||.|+++|-+|..+|+-+..+.... .. ...+.+|+||.++..++.+.
T Consensus 190 sa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 190 SAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999988762211 11 12367899999999999876
No 151
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.57 E-value=1.4e-07 Score=86.66 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhcc-cCCcccCCCCCHhHHHHHHHH
Q 043341 107 YEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLE-RRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 107 ~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~-~~~flvG~~lTlADi~l~~~L 161 (758)
.+|+++.+|+.|+.+.+.+ ..+.+.+..+|..|+ +++||+| .+|+||+++++.+
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 4677777777776554331 345677888999995 5589999 5999999999999
Q ss_pred hhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 162 ~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
.++.. .+++ +. |++.+|.++|.++ |+|++.++
T Consensus 81 ~~~~~--~g~~-l~--p~l~ay~~r~~~r--Pa~~~~~~ 112 (114)
T cd03195 81 NRLVL--NGDP-VP--ERLRDYARRQWQR--PSVQAWLA 112 (114)
T ss_pred HHHHH--cCCC-CC--HHHHHHHHHHHCC--HHHHHHHh
Confidence 98633 3333 22 9999999999999 99999874
No 152
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.56 E-value=1.2e-07 Score=86.26 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcccC----------CcccCCCCCHhHHHHHHHHhhhhccccccc-c-cccChhHHHHHHHHHhhccc
Q 043341 126 SEFENACTYVDKYLERR----------TFVVGHSLSIVDIAIWSALAGTGQRWDSLR-K-SKKYQNLVRWFNSLSAEYSD 193 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~----------~flvG~~lTlADi~l~~~L~~l~~~~~~~~-~-~~~~P~L~rW~~~i~~~~~p 193 (758)
..+...++.||++|..+ +||+|+++|+|||++++.+.++........ + ...||+|.+|+++|.++ |
T Consensus 32 ~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~aR--p 109 (111)
T cd03204 32 DELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQR--E 109 (111)
T ss_pred HHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHHcC--C
Confidence 57888999999999865 499999999999999999988632211111 0 35799999999999999 8
Q ss_pred hH
Q 043341 194 SL 195 (758)
Q Consensus 194 ~~ 195 (758)
+|
T Consensus 110 sf 111 (111)
T cd03204 110 SF 111 (111)
T ss_pred CC
Confidence 75
No 153
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.55 E-value=1.4e-07 Score=89.61 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcc--cCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHhh
Q 043341 126 SEFENACTYVDKYLE--RRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATY 202 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~--~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~~ 202 (758)
+.+...|+.||+.|+ +++|++|+++|+||+++++.+.++.... ......||+|.+|+++|.++ |+++++++.-
T Consensus 42 ~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~--~~~l~~~P~l~~~~~rv~~~--P~vk~~~~~~ 116 (137)
T cd03208 42 KAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELD--PSLLSDFPLLQAFKTRISNL--PTIKKFLQPG 116 (137)
T ss_pred HHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhc--hhhhccChHHHHHHHHHHcC--HHHHHHHhcC
Confidence 457889999999998 6789999999999999999998863211 22357899999999999999 9999998763
No 154
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.54 E-value=1.5e-07 Score=87.92 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhccc---CCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHHh
Q 043341 126 SEFENACTYVDKYLER---RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~---~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~~ 201 (758)
+.+...+..||++|+. ++|++|+++|+||+++++.+.++.... ......+|+|.+|+++|.++ |++++++..
T Consensus 38 ~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~--~~~~~~~P~l~~~~~rv~~~--p~v~~~~~~ 112 (126)
T cd03210 38 KDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLA--PGCLDAFPLLKAFVERLSAR--PKLKAYLES 112 (126)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhC--hHhhhcChHHHHHHHHHHhC--cHHHHHHhC
Confidence 4578899999999974 589999999999999999988763211 12257899999999999999 999998765
No 155
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.53 E-value=1.2e-07 Score=79.08 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 49 DSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 49 s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
||+++|++++++++|++++...+ |+||+|++++|.+++||.+|++||++.
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 78999999999999999987332 999999998999999999999999863
No 156
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.50 E-value=1.7e-07 Score=86.96 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhccc-CCcccCCCCCHhHHHHHHHHhhhhcccc---cccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 126 SEFENACTYVDKYLER-RTFVVGHSLSIVDIAIWSALAGTGQRWD---SLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~-~~flvG~~lTlADi~l~~~L~~l~~~~~---~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+.+.+.|..||.+|++ ++||+|+++|+||+++++.+.++..... ++.....+|+|.+|+++|.++ |+|++++.
T Consensus 33 ~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~r--ps~~~t~~ 109 (121)
T cd03201 33 QALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSR--ESFVKTKA 109 (121)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCC--chhhhcCC
Confidence 4577788999999985 7999999999999999998766522111 222237899999999999999 99988643
No 157
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.48 E-value=2.8e-07 Score=80.51 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
..|++++++|++|+++|++|+...+ |++|+|++ +|.+|+||.+|++||++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~-~~~~i~eS~~I~eYLde~~ 86 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLY-NGEVKTDNNKIEEFLEETL 86 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEE-CCEEecCHHHHHHHHHHHc
Confidence 4678999999999999999998654 99999987 8899999999999999975
No 158
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.48 E-value=2.5e-07 Score=99.74 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=108.3
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc-----ccCceEEEEecCCCcccchH-------------------------
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKESN------------------------- 298 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilRieDtd~~r~~~------------------------- 298 (758)
.++.-=.-+|||..||||.|-.+..+..++ ....++|.--||.|+-|.++
T Consensus 24 ~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~ 103 (360)
T PF01921_consen 24 PYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGC 103 (360)
T ss_dssp EEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSS
T ss_pred cEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCC
Confidence 466666688999999999999988888776 34457888889998654332
Q ss_pred ------HHHHHHHHHHHHhCCCCCCcccccCCHH--HHHHHHHHHHHh-CceeccCCchHHHHHHhc----CCC---CCc
Q 043341 299 ------EFVDNLLKDIETLGIKYETVTYTSDYFP--DLMEMAENLIRQ-GKAYVDDTPREQMQKERM----DGI---ESK 362 (758)
Q Consensus 299 ------~~~~~i~~dl~~LGi~~d~~~~~S~~~~--~~~~~~~~Li~~-G~aY~~~~~~e~~~~~~~----~~~---~~~ 362 (758)
-|...+.+.|+.|||+++ +++|++... .|.+.+...+++ ..+. +.+.+.+. ..| .-.
T Consensus 104 ~~SyaeH~~~~~~~~L~~~gie~e-~~s~te~Y~sG~y~~~i~~aL~~~~~I~------~Il~~~~~~~~~~~y~Pf~pi 176 (360)
T PF01921_consen 104 HESYAEHFNAPFEEFLDEFGIEYE-FISQTEMYRSGRYDEQIRTALENRDEIR------EILNEYRGRERPETYSPFLPI 176 (360)
T ss_dssp SSCHHHHHHHHHHHHHHTTT---E-EEECCCCCCTTTTHHHHCHHHHTHHHHH------HHHHHHHHHT--TT--SEEEE
T ss_pred CccHHHHHHHHHHHHHHHcCCceE-EEeHHHhhhCCchHHHHHHHHHhHHHHH------HHHHHhcCcCCCCCeeeeeee
Confidence 466788888999999874 334443211 222222222221 1111 11222211 111 011
Q ss_pred CCCCCHHHHHHHHHHHhcCccCCceeeEEe-eecCCCCCCCCCCcEEEEeCCCCCcccCCccc--ccccccccccccccc
Q 043341 363 CRNNSIEENMKLWKEMIAGSERGLECCLRG-KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYK--VYPTYDFACPFVDAK 439 (758)
Q Consensus 363 ~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~-k~~~~~~~~~~~D~vl~R~~~~~~~~~~~~~~--~~PtY~~a~~vdD~~ 439 (758)
|- -|-|+ .+.+.. ...-..-|-|+|...+|.-+-+... |--.|-.--+.-=+.
T Consensus 177 C~-----------------------~cGri~tt~v~~-~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 177 CE-----------------------KCGRIDTTEVTE-YDPEGGTVTYRCEECGHEGEVDITGGNGKLQWKVDWPMRWAA 232 (360)
T ss_dssp ET-----------------------TTEE--EEEEEE-E--SSSEEEEE--TTS---EEETTTT-EEE-HHHHHHHHHHH
T ss_pred cc-----------------------ccCCcccceeeE-eecCCCEEEEEecCCCCEEEEecCCCcccccCCCcChhhhhh
Confidence 11 01110 010000 0112466888885555533222111 122221111111122
Q ss_pred cCccEEeeCCCCCC---chHHHHHHH-HHhCCCcceEeeeeeeecccc-cccchhhhhhhhcCccCCCCCCCcchHHHHH
Q 043341 440 EGITHALRSSEYHD---RNAQYYRIQ-EDLGVRKVHIYEFSRLNMVYT-LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIV 514 (758)
Q Consensus 440 ~githvirg~d~~~---~~~~~~~l~-~alg~~~p~~~~~~~l~~~~~-klSKR~~~~li~~g~~~gwddpr~~tl~~l~ 514 (758)
.||+.=--|.||.. +...-..|. +.||.++|....|..+.+.|. |||||+++- .|+++.+
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~---------------~t~~e~L 297 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNG---------------ITPEEWL 297 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES-----------------------------HHHHH
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCc---------------cCHHHHH
Confidence 44554445999998 777777888 889999999888988888776 999999753 4899998
Q ss_pred HcCCCHHHHHHHHHHhccccccccccHH
Q 043341 515 RRGLLVEALIQFILEQGASKNLNLMEWD 542 (758)
Q Consensus 515 ~~G~~~eal~~~~~~~g~~~~~~~~d~~ 542 (758)
+- ++||.||.|+..... +....|+++
T Consensus 298 ~~-~~PE~lr~l~~~~~P-~~~~~~~~~ 323 (360)
T PF01921_consen 298 EY-APPESLRYLMARTKP-NKAKDFSFD 323 (360)
T ss_dssp TT-S-HHHHHHHHHCS-T-TS-EEE--S
T ss_pred Hh-cCHHHHHHHHcccCC-CcceEeccC
Confidence 88 799999998877423 334444444
No 159
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.44 E-value=8.4e-07 Score=94.35 Aligned_cols=171 Identities=18% Similarity=0.078 Sum_probs=111.4
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-------CcccchHHHHHHHHHHHHHhCCCCC--CcccccCCHHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-------NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFPD 327 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-------d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~~ 327 (758)
.|||.|||||.-+|+.++...+..|.+.++.|.|. +..+...++...+..++.++|++|+ .++.||+..+
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~~- 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVPE- 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcHH-
Confidence 48999999999999999999988899999999887 4556777888899999999999997 4677999874
Q ss_pred HHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCcE
Q 043341 328 LMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPV 407 (758)
Q Consensus 328 ~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~v 407 (758)
+.+.+- .+.|.++..++... . + |+++. + .. .+.+
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~---------~-------fk~~~-----------~--~~-~~~~------- 119 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--T---------G-------FKDKS-----------A--QG-ESVN------- 119 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--c---------c-------hhhhh-----------c--cC-CCCc-------
Confidence 333221 13455554444311 0 0 00000 0 00 0000
Q ss_pred EEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhC------CCcceEeee--eeee
Q 043341 408 YYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLG------VRKVHIYEF--SRLN 479 (758)
Q Consensus 408 l~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg------~~~p~~~~~--~~l~ 479 (758)
. |..+|-.--+.|=.+.+.++|..|.|...|...-.-+...+| +..|..... .+++
T Consensus 120 -----------~-----g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 120 -----------I-----GLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred -----------c-----hhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 0 112222212222233456888899999999888888999998 677865544 4443
Q ss_pred -ccc--ccccchhh
Q 043341 480 -MVY--TLLSKRKL 490 (758)
Q Consensus 480 -~~~--~klSKR~~ 490 (758)
+.| .|||||..
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 445 49999974
No 160
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.40 E-value=6.1e-07 Score=75.02 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=45.8
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
+.|++|++++++|+++|++|+...+ |++|+|++ +|..++||.+|++||+++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~~~p~g~vP~l~~-~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPWRSPTGKLPFLEL-NGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcccCCCcccCEEEE-CCEEEcCHHHHHHHHhhC
Confidence 3788999999999999999998654 89999998 789999999999999864
No 161
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.38 E-value=8.2e-07 Score=74.46 Aligned_cols=52 Identities=12% Similarity=0.241 Sum_probs=46.0
Q ss_pred cCCCCcHHHHHHHHHhcCCCeeeeec---------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 46 FPADSPPLLVIAAAKLAGITIPTETS---------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 46 ~~~s~~~~~v~i~l~~~gl~~~~~~~---------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
+..++++.+++++|++.|++|+.+.. |+||+|++ ||.+|+||.||+.||+++
T Consensus 14 ~~~~~~~~kv~~~L~elglpye~~~~~~~~~~~P~GkVP~L~~-dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 14 LPDNASCLAVQTFLKMCNLPFNVRCRANAEFMSPSGKVPFIRV-GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred cCCCCCHHHHHHHHHHcCCCcEEEecCCccccCCCCcccEEEE-CCEEEeCHHHHHHHHhcC
Confidence 46789999999999999999997422 99999998 889999999999999763
No 162
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.35 E-value=9e-07 Score=76.42 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHHHhC
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIGRVG 99 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~~~~ 99 (758)
+.|+++++++++|.++|++|+.+.+ |++|+|++++|..|+||.+|++||++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~ 83 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAY 83 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHHhC
Confidence 5688999999999999999987431 8999998843899999999999999864
No 163
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.33 E-value=7.2e-07 Score=78.55 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i 187 (758)
+.+.+.++.||++|+.++|++|+++|+||+++++.+.++............+|++.+|+++|
T Consensus 39 ~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 39 EELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 57888999999999999999999999999999999998743222211246799999999874
No 164
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.30 E-value=1.1e-06 Score=81.97 Aligned_cols=63 Identities=13% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~ 189 (758)
+.+...++.||++|++++|++|+++|+||+++++.+.+... ..+......+|+|.+|+++|.+
T Consensus 61 ~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~-~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 61 ANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARI-VSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred HHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHH-cCcccccccCChHHHHHHHHhc
Confidence 67888999999999999999999999999999999988632 2233335689999999999975
No 165
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.30 E-value=1.1e-06 Score=73.82 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=44.5
Q ss_pred ccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 45 SFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 45 ~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
....++++++++++|+++|++|+...+ |++|+|++ +|..|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~-~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD-GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE-CCEEEEcHHHHHHHhC
Confidence 356789999999999999999987422 99999987 7889999999999984
No 166
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.28 E-value=1.3e-06 Score=75.93 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccc----cccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSL----RKSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~----~~~~~~P~L~rW~~~i 187 (758)
+.+.+.++.||+.|++++|++|+++|+|||++++.+.++....... .....+|+|.+|+++|
T Consensus 22 ~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~ 87 (88)
T cd03193 22 SLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERI 87 (88)
T ss_pred HHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHh
Confidence 5788899999999999999999999999999999998763211111 1246799999999987
No 167
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.27 E-value=2e-06 Score=70.15 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=48.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
|+|| +++.++++.+++++++++|++|+.... +++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly--~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~-~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLY--YFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLED-GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEE--eCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE-CCEEEEcHHHHHHHhC
Confidence 4788 888899999999999999999987432 89999998 6899999999999984
No 168
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.20 E-value=3.2e-06 Score=77.56 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhc---ccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 126 SEFENACTYVDKYL---ERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 126 ~~l~~~L~~Le~~L---~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
+.+.+.+..+|..| ++++|++|+ +|+||+++++.+.+... .+.+ ..|+|.+|+++|.++ |++++.++
T Consensus 44 ~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~--~~~~---~~P~l~~~~~rv~~r--Psv~~~~~ 113 (114)
T cd03194 44 ADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRT--YGLP---LSPAAQAYVDALLAH--PAMQEWIA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHH--cCCC---CCHHHHHHHHHHHCC--HHHHHHHh
Confidence 45566666777666 467899999 99999999999988632 2222 239999999999999 99998765
No 169
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.18 E-value=3.4e-06 Score=102.37 Aligned_cols=94 Identities=29% Similarity=0.420 Sum_probs=73.8
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
-+++==+|+|||.|||||+++.++.+.+|| ...|.-++.+-.+| +.....++.+.|.+.|+.
T Consensus 34 ~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~ 113 (805)
T PRK00390 34 YYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKS 113 (805)
T ss_pred EEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 356666799999999999999999999998 35576666663333 334455789999999999
Q ss_pred hCCCCC--Cccccc--CCHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE--TVTYTS--DYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d--~~~~~S--~~~~~~~~~~~~Li~~G~aY 342 (758)
||+..| ..++++ +|.+..+.+..+|.++|++|
T Consensus 114 lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 149 (805)
T PRK00390 114 LGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAY 149 (805)
T ss_pred hCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999655 455444 37778899999999999999
No 170
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.17 E-value=5.4e-06 Score=100.84 Aligned_cols=93 Identities=29% Similarity=0.452 Sum_probs=72.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHHh
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIETL 311 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~L 311 (758)
+++=-+|+|||.|||||+++.++.+.+|| +..|.-++..-.+| |.....++.+.+.+.|+.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 66667999999999999999999999998 35577777764443 3344557889999999999
Q ss_pred CCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 312 GIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 312 Gi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|+..| ..+++++ +....+.+..+|.++|++|
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy 146 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAY 146 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeE
Confidence 98655 4554444 5566777788999999999
No 171
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.7e-06 Score=95.79 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=66.4
Q ss_pred ccEEeeCCCCCCchHHHHHHHH----HhCCCcceEeeeeeeeccc-ccccchhhhhhhhcCccCCCCCCCcchHHHHHHc
Q 043341 442 ITHALRSSEYHDRNAQYYRIQE----DLGVRKVHIYEFSRLNMVY-TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRR 516 (758)
Q Consensus 442 ithvirg~d~~~~~~~~~~l~~----alg~~~p~~~~~~~l~~~~-~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~ 516 (758)
||.=--|+||..+...+.-... -+|+++|....|-.+.+.| +|||||+++ ..++++.++-
T Consensus 230 Vd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~---------------~i~~~dwlev 294 (521)
T COG1384 230 VDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN---------------VISLSDWLEV 294 (521)
T ss_pred cccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc---------------EEcHHHHHHh
Confidence 3333349999988888776554 4578888777777777776 899999974 3488888887
Q ss_pred CCCHHHHHHHHHHhccccccccccHHH-HHHHHHhhc
Q 043341 517 GLLVEALIQFILEQGASKNLNLMEWDK-LWTINKKII 552 (758)
Q Consensus 517 G~~~eal~~~~~~~g~~~~~~~~d~~~-l~~~n~~~l 552 (758)
+.||.+|.++... --.....||++. |..+.-++.
T Consensus 295 -~~pE~lry~~~r~-kP~r~~~~d~~~~il~lvDEyd 329 (521)
T COG1384 295 -APPEVLRYLIART-KPNRHIDFDFDLGILKLVDEYD 329 (521)
T ss_pred -cCHhHeeeeeeec-CCCcceecCCCCChhHHHHHHH
Confidence 7999999877664 345556666666 555544443
No 172
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.13 E-value=2.6e-06 Score=76.35 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhccc--CCcccCCCCCHhHHHHHHHHhhhhcccccccc-cccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK-SKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~--~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~-~~~~P~L~rW~~~i 187 (758)
+.+.+.+..||++|.. ++|++|+++|+||+++++.+.++... .... ...||++.+|++++
T Consensus 42 ~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~--~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 42 EAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYL--DPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhh--CchhhHHhChhHHHHHHhC
Confidence 5678899999999987 89999999999999999999886322 1122 56899999999874
No 173
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=4.2e-05 Score=79.83 Aligned_cols=142 Identities=20% Similarity=0.241 Sum_probs=108.5
Q ss_pred CCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHhC---CCCC-CCHHHHHHHHHHH
Q 043341 49 DSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRVG---NFYG-QNAYEAGEIDEWL 116 (758)
Q Consensus 49 s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~~---~L~p-~~~~era~v~~wl 116 (758)
++-|.++.+.+++++.+.+++.. |++|+|++++|..+..-.-|..+|.... .+-. ....+.++...|+
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~~~a~~ 96 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNPWRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLADTLAFM 96 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCCCCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHHHHHHH
Confidence 44688899999999966666543 9999999999999999999999998733 2212 2256778888888
Q ss_pred HhccccCCh------------------------------------------------------------HHHHHHHHHHH
Q 043341 117 DYTPVFSSG------------------------------------------------------------SEFENACTYVD 136 (758)
Q Consensus 117 ~~~~~~l~~------------------------------------------------------------~~l~~~L~~Le 136 (758)
.+....+.+ ....+++..|.
T Consensus 97 sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~~~LS 176 (313)
T KOG3028|consen 97 SLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKALNLLS 176 (313)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 776665441 34466788999
Q ss_pred HhcccCCcccCCCCCHhHHHHHHHHhhhhcccccc----cccccChhHHHHHHHHHhh
Q 043341 137 KYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSL----RKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 137 ~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~----~~~~~~P~L~rW~~~i~~~ 190 (758)
+.|++++|++|+++|--|..+|..+..+....... ..+..++||.++.+++...
T Consensus 177 ~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 177 TLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999842222111 1234489999999999886
No 174
>PLN02563 aminoacyl-tRNA ligase
Probab=97.99 E-value=1.4e-05 Score=97.91 Aligned_cols=93 Identities=25% Similarity=0.413 Sum_probs=74.3
Q ss_pred eeeccCCCCCCC-ccchhhHHHHHHHHHHc--ccCceEEEEecCCC----------------cccchHHHHHHHHHHHHH
Q 043341 250 VRLRFAPEPSGY-LHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----------------PAKESNEFVDNLLKDIET 310 (758)
Q Consensus 250 v~~RfaP~PtG~-lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----------------~~r~~~~~~~~i~~dl~~ 310 (758)
+++=-+|.|||. |||||+++.++.+.+|| +..|.-++.+-.+| |.....++++.+.+.|+.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 666667999996 99999999999999998 45677777774444 344556788999999999
Q ss_pred hCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
||+..| ..+++++ |....+.+..+|.++|++|
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY 228 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAY 228 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEE
Confidence 996654 5555544 6677889999999999999
No 175
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.96 E-value=1.2e-05 Score=98.90 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=71.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecC----------------------CCccc-------chH
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDD----------------------TNPAK-------ESN 298 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieD----------------------td~~r-------~~~ 298 (758)
+++==||++||.||||||++.++.+.++| ...|..++.+-. ++++. ...
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 55666799999999999999999999998 345666666532 23321 233
Q ss_pred HHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 299 EFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 299 ~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
++.+.+.++++.||+ +|+..+++.+ +....+....+|.++|++|
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy 179 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLY 179 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 567899999999999 7777666554 5667888999999999999
No 176
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=1.2e-05 Score=95.52 Aligned_cols=94 Identities=29% Similarity=0.403 Sum_probs=72.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEE---e-------------cCCCcccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVR---F-------------DDTNPAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilR---i-------------eDtd~~r~~~~~~~~i~~dl~~ 310 (758)
-.++=-=|.|||.||+||+|+..+.+.+|| +.+|.=||- + ..+||..-...+++.+++.|+.
T Consensus 36 fyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~ 115 (814)
T COG0495 36 FYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKS 115 (814)
T ss_pred eEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 366666799999999999999999999998 344555554 2 3568888889999999999999
Q ss_pred hCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
||+..| ....++| |..-.+-...+|.++|+||
T Consensus 116 lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y 151 (814)
T COG0495 116 LGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAY 151 (814)
T ss_pred hCCccccccceecCCccHHHHHHHHHHHHHHCCCEE
Confidence 998766 3333333 4444556677999999999
No 177
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.93 E-value=1.5e-05 Score=98.11 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=71.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-----------------------cc----------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-----------------------PA---------- 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-----------------------~~---------- 294 (758)
+++=-||+|||.||||||++-++.+.++| ...|..++..-..| +.
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 66667899999999999999999999998 45577776653222 10
Q ss_pred cchHHHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
....++++.+.++++.||+ +|+..+.+.+ +....+....+|.++|++|
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliy 170 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLY 170 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEe
Confidence 1233578999999999999 5666665554 5566788889999999999
No 178
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.88 E-value=1.9e-05 Score=70.23 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i 187 (758)
..+.+.+..||.+|++++| +++|+|||++++.+.+......+......+|+|.+|+++|
T Consensus 40 ~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 40 GKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 5778899999999998898 8999999999999988633223333357899999999875
No 179
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.88 E-value=2.4e-05 Score=97.66 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=72.9
Q ss_pred eccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc---------------------------------ccc
Q 043341 252 LRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP---------------------------------AKE 296 (758)
Q Consensus 252 ~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~---------------------------------~r~ 296 (758)
.==||++||.||||||++-++.+.++| ...|..+++.-.+|- ...
T Consensus 107 ~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~ 186 (1205)
T PTZ00427 107 YDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGI 186 (1205)
T ss_pred ecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHH
Confidence 444799999999999999999999998 466888888755541 001
Q ss_pred hHHHHHHHHHHHHHhC--CCCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 297 SNEFVDNLLKDIETLG--IKYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 297 ~~~~~~~i~~dl~~LG--i~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
..+|.+.+.+.++.|| ++|+..+++.+ +.+.......+|.++|++|
T Consensus 187 ~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIY 236 (1205)
T PTZ00427 187 VLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVY 236 (1205)
T ss_pred HHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 2256788899999999 78887776655 7778899999999999999
No 180
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.86 E-value=2.4e-05 Score=97.44 Aligned_cols=93 Identities=25% Similarity=0.387 Sum_probs=73.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc---------c-----------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA---------K----------------------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~---------r----------------------- 295 (758)
+++==||+|||.||||||++.++.+.+|| ...|.-++.+-.+|-. +
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 66667899999999999999999999998 4567777777555521 0
Q ss_pred -chHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 -ESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 -~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
-..++.+.|.+.|+.||+..| ..+++.+ +....+.+..+|.++|++|
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliy 194 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIY 194 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 124677889999999997655 5555544 6667899999999999999
No 181
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.86 E-value=2.4e-05 Score=96.61 Aligned_cols=93 Identities=24% Similarity=0.371 Sum_probs=70.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-----------------------cccc-------h
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-----------------------PAKE-------S 297 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-----------------------~~r~-------~ 297 (758)
+++==||++||.||||||++.++-+.++| ...|.-++.+-.+| +... .
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 55556799999999999999999999998 34566666653333 2111 2
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 298 NEFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 298 ~~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
.++++.+.++++.||+ +|+..+++.+ +.........+|.++|++|
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIy 163 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIY 163 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 3567788999999999 7877666654 5567888899999999999
No 182
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.86 E-value=3e-05 Score=91.50 Aligned_cols=93 Identities=24% Similarity=0.348 Sum_probs=64.1
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEe---cCC-----------------------Ccc-------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRF---DDT-----------------------NPA------- 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRi---eDt-----------------------d~~------- 294 (758)
+++==||++||.||+|||++..+-+.+|| ...|..++.. |-+ ..+
T Consensus 26 ~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~ 105 (601)
T PF00133_consen 26 FIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECR 105 (601)
T ss_dssp EEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHH
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhc
Confidence 33445699999999999999999999998 4567766665 211 111
Q ss_pred cchHHHHHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
....++.+.+.++++.||+. |+..+++.+ +.........+|.++|++|
T Consensus 106 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIy 157 (601)
T PF00133_consen 106 EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIY 157 (601)
T ss_dssp HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEE
T ss_pred chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEE
Confidence 11336778899999999975 555555544 5667888899999999999
No 183
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.79 E-value=2.9e-05 Score=96.63 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=70.9
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc---------c-----------------------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA---------K----------------------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~---------r----------------------- 295 (758)
+++==||++||.|||||+++.++.+.++| ...|.-++.+-.+|-. +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 44445699999999999999999999998 4567777777555411 0
Q ss_pred -chHHHHHHHHHHHHHhCCCCC--Ccccc--cCCHHHHHHHHHHHHHhCcee
Q 043341 296 -ESNEFVDNLLKDIETLGIKYE--TVTYT--SDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 -~~~~~~~~i~~dl~~LGi~~d--~~~~~--S~~~~~~~~~~~~Li~~G~aY 342 (758)
...++.+.|.+.++.||+..| ..+++ .++.+..+....+|.++|++|
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliy 182 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIY 182 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 123567889999999997655 54444 447778899999999999999
No 184
>PLN02943 aminoacyl-tRNA ligase
Probab=97.78 E-value=4.4e-05 Score=94.27 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=72.6
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc-----------------------cc--------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA-----------------------KE-------- 296 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~-----------------------r~-------- 296 (758)
+++=-||++||.||||||++..+.+.+|| ...|.-++.+-.+|-. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 66667899999999999999999999998 4568778777555511 00
Q ss_pred -hHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 297 -SNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 297 -~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
+.++.+.|.+.++.||+..| ..+++.+ +....+....+|.++|++|
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliy 221 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIY 221 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 13567899999999999644 5555544 6667888999999999999
No 185
>PLN02381 valyl-tRNA synthetase
Probab=97.77 E-value=3.8e-05 Score=95.44 Aligned_cols=93 Identities=24% Similarity=0.366 Sum_probs=72.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc--------------------------c-------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP--------------------------A------- 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~--------------------------~------- 294 (758)
+++==||++||.||||||++.++.+.++| ...|.-++.+-.+|- +
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 66777899999999999999999999998 455777777644441 0
Q ss_pred cchHHHHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
.-..++.+.|.+.++.||+..| ..+++++ +....+.+..+|.++|++|
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIy 262 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIY 262 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 0123567889999999996654 5555554 6677889999999999999
No 186
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.75 E-value=3.5e-05 Score=72.04 Aligned_cols=62 Identities=21% Similarity=0.390 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcc-cc--ccc-ccccChhHHHHHHHH
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR-WD--SLR-KSKKYQNLVRWFNSL 187 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~-~~--~~~-~~~~~P~L~rW~~~i 187 (758)
....+.|+.|+..|++++||+|+++|.||+++|+.+..+... .. ... ....||||.+|.++|
T Consensus 60 ~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri 125 (126)
T cd03211 60 EEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRI 125 (126)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhc
Confidence 456778999999999999999999999999999998775311 10 111 256899999999987
No 187
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=97.73 E-value=5.7e-05 Score=71.83 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHh-cccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKY-LERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~-L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
+.|..+++.+=+. ..+++|++|+++|+|||++|+.+..+... ........+|+|.+|+++|.+.
T Consensus 82 ~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~-~~~~Dl~~~p~I~~W~eRm~~~ 146 (149)
T cd03197 82 EWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGH-PAFKDMVEETKIGEWYERMDAA 146 (149)
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHh-ccccchhhCcCHHHHHHHHHHH
Confidence 3344444333333 34568999999999999999999876322 2332366899999999999775
No 188
>PLN02882 aminoacyl-tRNA ligase
Probab=97.73 E-value=4.6e-05 Score=95.37 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=72.1
Q ss_pred eeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc-----------------c----------------c
Q 043341 251 RLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP-----------------A----------------K 295 (758)
Q Consensus 251 ~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~-----------------~----------------r 295 (758)
+.==||++||.+|||||++.++.+.++| ...|..+++.-.+|- . .
T Consensus 42 ~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~ 121 (1159)
T PLN02882 42 FYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRS 121 (1159)
T ss_pred EeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHH
Confidence 3334699999999999999999999998 456777887744431 0 0
Q ss_pred chHHHHHHHHHHHHHhC--CCCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLG--IKYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LG--i~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
...+|.+.+.+.++.|| ++||..|++.+ +.+.......+|.++|++|
T Consensus 122 ~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliy 172 (1159)
T PLN02882 122 IVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVY 172 (1159)
T ss_pred HHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 12357788999999999 77887776655 6778889999999999999
No 189
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.72 E-value=5.1e-05 Score=94.17 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=71.5
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCc---------------------------------c
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNP---------------------------------A 294 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~---------------------------------~ 294 (758)
+++==||+|||.||+|||++-.+.+.++| ...|.-+++.-..|- .
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 44555799999999999999999999998 456777777633320 1
Q ss_pred cchHHHHHHHHHHHHHhCC--CCCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 295 KESNEFVDNLLKDIETLGI--KYETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 295 r~~~~~~~~i~~dl~~LGi--~~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
....++.+.+.+.++.||+ +|+..+++.+ +.+.......+|.++|++|
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliy 175 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLY 175 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 1233678899999999994 5666666655 6667788889999999999
No 190
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.65 E-value=4.9e-05 Score=93.88 Aligned_cols=87 Identities=9% Similarity=-0.065 Sum_probs=64.9
Q ss_pred eCCCCCC-chHHHHHHHHHhCCC---cc-eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHH
Q 043341 447 RSSEYHD-RNAQYYRIQEDLGVR---KV-HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVE 521 (758)
Q Consensus 447 rg~d~~~-~~~~~~~l~~alg~~---~p-~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~e 521 (758)
=|.|++. |..... +..++.++ .| .+..++++..+|+|||||+++ +.++.++.++ |+++
T Consensus 579 ~GkDii~~H~~~~i-~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGN---------------vI~p~d~i~~-yGaD 641 (938)
T TIGR00395 579 SGKDLIPNHLTFYI-FHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGN---------------VLTLEQAVEK-FGAD 641 (938)
T ss_pred EeeccccchHHHHH-HHHHHcCCccccCcEEEEeceEEeCCccccCcCCC---------------CCCHHHHHHH-cChH
Confidence 3888874 444443 33333333 35 455569999999999999974 3477888888 9999
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 522 ALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 522 al~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
++|.|++..+...++.+|+++.+....+.
T Consensus 642 alRl~Ll~~~~~~~D~~fs~~~~~~~~~~ 670 (938)
T TIGR00395 642 VARLYIADAAETVQDADWKESEVEGTILR 670 (938)
T ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 99999999888999999999988766543
No 191
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=97.63 E-value=9.6e-05 Score=70.13 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhccccc---c-cccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDS---L-RKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~---~-~~~~~~P~L~rW~~~i~~~ 190 (758)
+.....++.|+..|++++|++|+++|.||+++++.+..+...... + ....++|||.+|+++|.+.
T Consensus 67 ~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~~ 135 (137)
T cd03212 67 RDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILSL 135 (137)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHHh
Confidence 456778999999999999999999999999999888765211111 0 1256899999999999865
No 192
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00012 Score=86.99 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=68.9
Q ss_pred cCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCCcc-----------------------c---------chHH
Q 043341 254 FAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTNPA-----------------------K---------ESNE 299 (758)
Q Consensus 254 faP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd~~-----------------------r---------~~~~ 299 (758)
=|||+||-||||||-+..+-+.++| +..|.-+|=+-.+|-. | -+++
T Consensus 40 PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e 119 (877)
T COG0525 40 PPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEE 119 (877)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Confidence 3699999999999999999999998 4557777766555411 0 0235
Q ss_pred HHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 300 FVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
+...|.+.|+.||+..| ..+++.| +....++...+|.++|.+|
T Consensus 120 ~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIY 166 (877)
T COG0525 120 SGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIY 166 (877)
T ss_pred HHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCcee
Confidence 67889999999999866 4445544 5667899999999999999
No 193
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.58 E-value=0.00011 Score=90.76 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=69.4
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHc--ccCceEEEEecCCC-------------------------ccc-------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN-------------------------PAK------- 295 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd-------------------------~~r------- 295 (758)
+++==||++||.||||||++-++-+.++| ...|..++.+-..| +..
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 55556799999999999999999999998 34566666553222 111
Q ss_pred chHHHHHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 296 ESNEFVDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 296 ~~~~~~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
...++++.+.++++.||+. |+..+.+.+ +.........+|.++|++|
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliy 187 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLY 187 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEE
Confidence 1225678899999999997 656666544 5567788899999999999
No 194
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.46 E-value=0.00036 Score=76.86 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=53.3
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCc-------ccchHHHHHHHHHHHHHhCCCCC--Cccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP-------AKESNEFVDNLLKDIETLGIKYE--TVTY 320 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~-------~r~~~~~~~~i~~dl~~LGi~~d--~~~~ 320 (758)
+.|=|.| ||.|||||.-+ +.++..-...|...+.-|.|.-. .....++...+..++-.+|++++ .++.
T Consensus 69 iytG~~P--SG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~ 145 (368)
T PRK12285 69 VYTGFMP--SGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYF 145 (368)
T ss_pred EEEccCC--CCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 5555554 58999999864 54444434456677777766421 12334555557788889999998 5788
Q ss_pred ccCCHHHHHHHHHHH
Q 043341 321 TSDYFPDLMEMAENL 335 (758)
Q Consensus 321 ~S~~~~~~~~~~~~L 335 (758)
||++.+ +++.+-.|
T Consensus 146 qS~~~~-~~~l~~~l 159 (368)
T PRK12285 146 QSENIK-VYDLAFEL 159 (368)
T ss_pred CCchHH-HHHHHHHH
Confidence 999875 55555443
No 195
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.46 E-value=0.00033 Score=58.80 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=44.7
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec--------CCccEEEeCCCcEEechHHHHHHHHHh
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS--------GSAPTFSFSNGSKLQGTYVLLRYIGRV 98 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL~~~ 98 (758)
+.++.|.++.+.|+.+|++|+.+.. |++|+|++ +|..+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~~sp~gkLP~l~~-~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPWRSPTGKLPALLT-SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCCCCCCCccCEEEE-CCEEecChHHHHHHHHHc
Confidence 3567899999999999999998542 99999998 789999999999999764
No 196
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.46 E-value=0.00046 Score=75.07 Aligned_cols=69 Identities=23% Similarity=0.417 Sum_probs=50.5
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Ccc----cchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NPA----KESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~~----r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++.++..- +.+..++.-|.|. ++. ....+..+.+..++-.+|++++ .++.||+..+
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~e 88 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYPE 88 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcHH
Confidence 588999999999999988776 4566666666552 221 2334555666778888999999 5788999873
No 197
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0011 Score=70.74 Aligned_cols=172 Identities=19% Similarity=0.145 Sum_probs=104.3
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-------Cc-ccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-------NP-AKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-------d~-~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
-|||.|||||--.|+.+|.........++.-|.|. ++ +.....+...+..++=.+||+++ .++.||+..+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 48999999999999999998887666666666553 22 13456777778888888999999 5788999876
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
+.+.+-. +-|..+.-+++. |-. ||-. ...+..
T Consensus 93 -~~eLa~~-------l~~~~~~gel~r------------------------~~~-----------fKdk-~~~~~~---- 124 (314)
T COG0180 93 -HAELAWL-------LSCVTNFGELER------------------------MTQ-----------FKDK-SAKKGE---- 124 (314)
T ss_pred -HHHHHHH-------HHccCcHHHHHh------------------------hcC-----------cchh-hhcccc----
Confidence 5554432 223333222221 100 1100 000000
Q ss_pred EEEEeCCCCCcccCCccccccccccccccccccc-CccEEeeCCCCCCchHHHHHHHHHhC------CCcceEeeee--e
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKE-GITHALRSSEYHDRNAQYYRIQEDLG------VRKVHIYEFS--R 477 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~-githvirg~d~~~~~~~~~~l~~alg------~~~p~~~~~~--~ 477 (758)
.... | --.||.-.- -|.+. .-++|=.|.|-..|...-.-|-+.++ +..|...... +
T Consensus 125 ----~~~~-----G--l~~YPvlqA----ADILl~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~ 189 (314)
T COG0180 125 ----SIPI-----G--LLTYPVLQA----ADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVAR 189 (314)
T ss_pred ----cccc-----c--chhccHHHH----HHhhhccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCc
Confidence 0000 0 012333221 24443 44666679999999999888888887 6666544333 4
Q ss_pred ee-ccc-ccccchhhh
Q 043341 478 LN-MVY-TLLSKRKLL 491 (758)
Q Consensus 478 l~-~~~-~klSKR~~~ 491 (758)
++ +.| .|||||..+
T Consensus 190 i~gL~g~~KMSkS~~n 205 (314)
T COG0180 190 LPGLDGPGKMSKSDPN 205 (314)
T ss_pred ccCCCCCCcccccCCC
Confidence 43 567 799999854
No 198
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.25 E-value=0.0022 Score=69.80 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=48.4
Q ss_pred CCCCCccchhhHHHHHHHHHH-cccCceEEEEecCC-------CcccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFA-QRYQGQLIVRFDDT-------NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~A-r~~~G~~ilRieDt-------d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++-+|..- ..++.+++.=|.|. |++ ...++......++-.+|++|+ .+++||+..+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~-~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPE-QFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHH-HHHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 488999999999999988544 45665554545442 222 233455556777788999998 5788999765
No 199
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00031 Score=79.62 Aligned_cols=94 Identities=27% Similarity=0.474 Sum_probs=72.5
Q ss_pred eeeeccCCCCCCCccchhhHHHHHHHHHHccc--CceEEEEe----------------cCCCcccchHHHHHHHHHHHHH
Q 043341 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRY--QGQLIVRF----------------DDTNPAKESNEFVDNLLKDIET 310 (758)
Q Consensus 249 ~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~--~G~~ilRi----------------eDtd~~r~~~~~~~~i~~dl~~ 310 (758)
++|.--=|.|+|-|||||.|-..+++.+||-| +|.-|+.- ..++|..-..+-++.+++-|..
T Consensus 59 KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~ 138 (876)
T KOG0435|consen 59 KYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKS 138 (876)
T ss_pred ceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHH
Confidence 46666679999999999999999999999954 46666553 2455666666788999999999
Q ss_pred hCCCCC---Cccc-ccCCHHHHHHHHHHHHHhCcee
Q 043341 311 LGIKYE---TVTY-TSDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 311 LGi~~d---~~~~-~S~~~~~~~~~~~~Li~~G~aY 342 (758)
||+.+| ++.. ..||+.--+-+.-+|.++|+||
T Consensus 139 lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAY 174 (876)
T KOG0435|consen 139 LGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAY 174 (876)
T ss_pred cCcccccccccccCCcchhHHHHHHHHHHHHhhhhh
Confidence 998755 4433 3556665566778999999999
No 200
>PLN02959 aminoacyl-tRNA ligase
Probab=96.85 E-value=0.0018 Score=81.06 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=46.5
Q ss_pred EeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHH
Q 043341 472 IYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKL 544 (758)
Q Consensus 472 ~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l 544 (758)
+..++++...|+|||||+++. .++.++.++ |++|++|.+++..+....+.+|+++.+
T Consensus 706 v~v~G~V~~~G~KMSKSkGNv---------------I~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~ 762 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGNF---------------LTLRQAIEE-FSADATRFALADAGDGVDDANFVFETA 762 (1084)
T ss_pred EEEccEEecCCcCccccCCCc---------------CCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHH
Confidence 556689999999999999743 366677777 999999999998877778889988743
No 201
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.83 E-value=0.0061 Score=54.87 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhccccCCh------------------------HHHHHHHHHHHHhccc-CCcccCCCCCHhHHHHHH
Q 043341 105 NAYEAGEIDEWLDYTPVFSSG------------------------SEFENACTYVDKYLER-RTFVVGHSLSIVDIAIWS 159 (758)
Q Consensus 105 ~~~era~v~~wl~~~~~~l~~------------------------~~l~~~L~~Le~~L~~-~~flvG~~lTlADi~l~~ 159 (758)
|..+|+..++.-.|..+.+.+ ....+.+...+..|.. ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 345677777766666666552 5667788888888875 5999995 9999999999
Q ss_pred HHhhhhcccccccccccChhHHHHHHHHHhhccchHHHHHH
Q 043341 160 ALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTA 200 (758)
Q Consensus 160 ~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~~~p~~~~~l~ 200 (758)
++.++...... -.+.+..|.++.-++ |++++-+.
T Consensus 80 ml~Rl~~~gd~-----vP~~l~~Ya~~qwqr--psVQ~Wla 113 (117)
T PF14834_consen 80 MLNRLVTYGDP-----VPERLADYAERQWQR--PSVQRWLA 113 (117)
T ss_dssp HHHHHHTTT---------HHHHHHHHHHHT---HHHHHHHH
T ss_pred HHHHHHHcCCC-----CCHHHHHHHHHHHCC--HHHHHHHH
Confidence 99987332222 236789999999999 99988654
No 202
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=96.79 E-value=0.0043 Score=67.69 Aligned_cols=171 Identities=19% Similarity=0.161 Sum_probs=96.0
Q ss_pred CCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-----C--cccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 256 PEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-----N--PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 256 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-----d--~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
=.|||.+||||.- ++.++..-...|...++=|.|. + ...........+..++..+|++++ .++.||+..+
T Consensus 37 ~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~ 115 (329)
T PRK08560 37 FEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQL 115 (329)
T ss_pred cCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhc
Confidence 4577999999966 5665555444566666667553 1 123344566678888889999998 5778888754
Q ss_pred HHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCCCCc
Q 043341 327 DLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406 (758)
Q Consensus 327 ~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~~D~ 406 (758)
.. ++...+..-+ |.++..++.... .. .+ | . .
T Consensus 116 ~~-~~~~~~~~l~----~~~~~~~l~r~~---------------------~~-----~~-----~--~---~-------- 146 (329)
T PRK08560 116 DK-EYWLLVLKLA----KNTTLARARRSM---------------------TI-----MG-----R--R---M-------- 146 (329)
T ss_pred cc-hHHHHHHHHH----hhccHHHHHHhh---------------------hh-----hc-----c--c---C--------
Confidence 32 1222222211 222222222100 00 00 0 0 0
Q ss_pred EEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccc--
Q 043341 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYT-- 483 (758)
Q Consensus 407 vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~-- 483 (758)
+. ...|- -.||.- -+.|=.+.+.++|.-|.|...|...-.-+.+.+|...|......+| .+.|.
T Consensus 147 -----~~---~~~g~--l~YP~l---qaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~ 213 (329)
T PRK08560 147 -----EE---PDVSK--LVYPLM---QVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGI 213 (329)
T ss_pred -----CC---CCHHH--HHHHHH---HHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCC
Confidence 00 00000 123433 2233334578899999998877777777778899888865555444 35565
Q ss_pred cccchh
Q 043341 484 LLSKRK 489 (758)
Q Consensus 484 klSKR~ 489 (758)
|||||.
T Consensus 214 KMSKS~ 219 (329)
T PRK08560 214 KMSKSK 219 (329)
T ss_pred CCcCCC
Confidence 999997
No 203
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.79 E-value=0.0039 Score=53.08 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=50.9
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
+.++|| +.+.+++|.+++.+|+..|++|+...+ ..+|++.+ ||..|.++..|..||+
T Consensus 8 ~~V~ly--~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i-~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVF--TKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI-GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEE--ECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE-CCEEEcCHHHHHHHhC
Confidence 447888 889999999999999999999998654 68999988 8899999999999984
No 204
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.76 E-value=0.0039 Score=66.22 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=36.5
Q ss_pred cCccEEeeCCCCCCchHHHHHHHHHhC-CCcceEeeeeee-ecccccccchhh
Q 043341 440 EGITHALRSSEYHDRNAQYYRIQEDLG-VRKVHIYEFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 440 ~githvirg~d~~~~~~~~~~l~~alg-~~~p~~~~~~~l-~~~~~klSKR~~ 490 (758)
.+.++++-|.|-..|...=.-+.+.++ ...|.-....+| .+.|.|||||..
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~ 204 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSES 204 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCC
Confidence 456888999998877777666777775 566754444443 356889999984
No 205
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0029 Score=74.12 Aligned_cols=93 Identities=23% Similarity=0.364 Sum_probs=69.7
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCCccc----------------------c---------
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTNPAK----------------------E--------- 296 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd~~r----------------------~--------- 296 (758)
++.==|||.||-||||||-+..+-+.+||. ..|+-++=+-.+|-.- .
T Consensus 78 ~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw 157 (995)
T KOG0432|consen 78 VIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVW 157 (995)
T ss_pred eeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHH
Confidence 444457999999999999999999999984 4577777776555210 0
Q ss_pred --hHHHHHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 297 --SNEFVDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 297 --~~~~~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
+.++-..|.+.|+.||-. |+..+++-| .-....+.+.+|-++|.+|
T Consensus 158 ~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIy 209 (995)
T KOG0432|consen 158 EWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIY 209 (995)
T ss_pred HHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceE
Confidence 124457789999999976 555556544 4456888999999999999
No 206
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.71 E-value=0.004 Score=77.16 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=6.0
Q ss_pred cccccccCccEE
Q 043341 434 PFVDAKEGITHA 445 (758)
Q Consensus 434 ~vdD~~~githv 445 (758)
++|=|..|.+++
T Consensus 573 P~D~~~~GkDii 584 (938)
T TIGR00395 573 PLDWRISGKDLI 584 (938)
T ss_pred CceEEEEeeccc
Confidence 344455555543
No 207
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.61 E-value=0.0075 Score=63.98 Aligned_cols=52 Identities=17% Similarity=0.034 Sum_probs=40.4
Q ss_pred cCccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccccccchhhh
Q 043341 440 EGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYTLLSKRKLL 491 (758)
Q Consensus 440 ~githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~klSKR~~~ 491 (758)
.+.++++.|.|...|...-.-+.+.++...|....+..| .+.|.|||||..+
T Consensus 150 l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSKS~~~ 202 (269)
T cd00805 150 LDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGN 202 (269)
T ss_pred HhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccCCCCC
Confidence 345888999999988888888888899887755555555 4678899999843
No 208
>PLN02486 aminoacyl-tRNA ligase
Probab=96.35 E-value=0.015 Score=64.45 Aligned_cols=69 Identities=26% Similarity=0.453 Sum_probs=47.5
Q ss_pred CCCC-CccchhhHHHHHHHHHHcccCceEEEEecCC----C---cccchHHHHHHHHHHHHHhCCCCC--CcccccCCH
Q 043341 257 EPSG-YLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----N---PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYF 325 (758)
Q Consensus 257 ~PtG-~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d---~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~ 325 (758)
.||| .|||||+-.+.+.-.+-+..+...++-|.|- . ...+..++......++..+|++++ .++.++++.
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHH
Confidence 4788 5999999999876667767777777778761 1 112333455667777888999998 344455555
No 209
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=96.30 E-value=0.0042 Score=66.74 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=97.0
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC-----C----cccchHHHHHHHHHH--HHHhCCCCC--CcccccC
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT-----N----PAKESNEFVDNLLKD--IETLGIKYE--TVTYTSD 323 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt-----d----~~r~~~~~~~~i~~d--l~~LGi~~d--~~~~~S~ 323 (758)
.|||.|||||.-+... ...-...|...+.=|.|. | +.+......+.+.++ +-.+|++++ .++.||+
T Consensus 13 ~PTg~lHlG~l~~~~~-~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPIMK-LIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHHHH-HHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHHHH-HHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 4889999998877654 333333777777777542 2 233444555555555 678899997 6788998
Q ss_pred CHHHHHHHHHHHHHhCceeccCCchHHHHHHhcCCCCCcCCCCCHHHHHHHHHHHhcCccCCceeeEEeeecCCCCCCCC
Q 043341 324 YFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSL 403 (758)
Q Consensus 324 ~~~~~~~~~~~Li~~G~aY~~~~~~e~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~R~k~~~~~~~~~~ 403 (758)
..+.. ++...|...+... +...+.. +..+.. |++. .....+
T Consensus 92 ~~~~~-~~~~~l~~~~~~~----~l~~~~~---------------------~~~~~~----------~~~~---~~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDVARLF----SLNRMLR---------------------FKDVKK----------RLKN---GEGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHHHBHH----HHHHHHH---------------------HHHHHH----------HHSS---TTTSBH
T ss_pred ccccc-chhhhhccccccc----chhhhhh---------------------hccccc----------cccc---ccCcce
Confidence 76554 5555544444321 1111111 000000 0000 000000
Q ss_pred CCcEEEEeCCCCCcccCCcccccccccccccccccccCccEEeeCCCCCCchHHHHHHHHHhCCC----cceEeeeeeee
Q 043341 404 RDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR----KVHIYEFSRLN 479 (758)
Q Consensus 404 ~D~vl~R~~~~~~~~~~~~~~~~PtY~~a~~vdD~~~githvirg~d~~~~~~~~~~l~~alg~~----~p~~~~~~~l~ 479 (758)
.. -.||.-+ +.|=...+.++++.|.|...|...-.-+.+.+|.. .|.......|+
T Consensus 133 ~~------------------~~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 GE------------------FSYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp HH------------------HHHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred ee------------------EEccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 00 1244321 22333455668899999988887777788888887 78666565555
Q ss_pred -cccc-cccchhhh
Q 043341 480 -MVYT-LLSKRKLL 491 (758)
Q Consensus 480 -~~~~-klSKR~~~ 491 (758)
+.|+ |||||..+
T Consensus 192 ~l~G~~KMSKS~~n 205 (292)
T PF00579_consen 192 GLDGQKKMSKSDPN 205 (292)
T ss_dssp STTSSSBTTTTTTG
T ss_pred ccCCccccCccCCc
Confidence 4577 99999965
No 210
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=96.05 E-value=0.019 Score=71.07 Aligned_cols=88 Identities=5% Similarity=-0.084 Sum_probs=63.8
Q ss_pred eeCCCCCC-chHHHHHHHHHhCC---Ccc-eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCH
Q 043341 446 LRSSEYHD-RNAQYYRIQEDLGV---RKV-HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLV 520 (758)
Q Consensus 446 irg~d~~~-~~~~~~~l~~alg~---~~p-~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~ 520 (758)
+=|.|+.. |...+ .+..+..+ +.| .+..++++..+|+|||||+++ ..+..++.++ |++
T Consensus 535 ~~GkDii~~Hl~~~-~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GN---------------vVdp~eii~~-yGa 597 (897)
T PRK12300 535 HSGKDLIPNHLTFF-IFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGN---------------VIPLRKAIEE-YGA 597 (897)
T ss_pred EeeeccCccHHHHH-HHHHHHhcCCCccCcEEEEcceEEECCccccCcCCC---------------CCCHHHHHHH-cCh
Confidence 34777764 33433 33333333 245 566679998999999999974 3366777877 999
Q ss_pred HHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 521 EALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 521 eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
|++|.|++..+....+.+|+.+.+...-+.
T Consensus 598 DalRl~L~~~~~~~~D~~fs~~~v~~~~~~ 627 (897)
T PRK12300 598 DVVRLYLTSSAELLQDADWREKEVESVRRQ 627 (897)
T ss_pred HHHHHHHHhCCCCCCCCccCHHHHHHHHHH
Confidence 999999999888899999999887665443
No 211
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.98 E-value=0.022 Score=47.29 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=48.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
++|| +.+.+++|.+++-+|...|++|+...+ ..+|++.+ ||..+.++..|.+||+
T Consensus 3 v~ly--s~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi-~g~~igg~~~l~~~l~ 72 (72)
T cd03029 3 VSLF--TKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFI-DGELIGGSDDLEKYFA 72 (72)
T ss_pred EEEE--ECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEE-CCEEEeCHHHHHHHhC
Confidence 5777 888999999999999999999987554 57999988 8899999999999974
No 212
>PRK10638 glutaredoxin 3; Provisional
Probab=95.85 E-value=0.032 Score=47.83 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=47.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIG 96 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~ 96 (758)
++|| +.+.+++|.+++.+|..+|++|+.+.+ .++|++.+ ||..|-+...+..+-.
T Consensus 4 v~ly--~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~-~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 4 VEIY--TKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI-DAQHIGGCDDLYALDA 74 (83)
T ss_pred EEEE--ECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEeCHHHHHHHHH
Confidence 6788 888999999999999999999988654 68999988 8889988888877654
No 213
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.81 E-value=0.032 Score=62.66 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=35.5
Q ss_pred CccEEeeCCCCCCchHHHHHHHHHhCCCcceEeeeeee-ecccccccchhh
Q 043341 441 GITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYTLLSKRKL 490 (758)
Q Consensus 441 githvirg~d~~~~~~~~~~l~~alg~~~p~~~~~~~l-~~~~~klSKR~~ 490 (758)
+++.++-|.|...|...=.-+.+.+|...|.......| ...|+|||||..
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~ 236 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAG 236 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCC
Confidence 67778889998877777777778888877633322222 445789999974
No 214
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=95.67 E-value=0.089 Score=58.47 Aligned_cols=52 Identities=12% Similarity=-0.043 Sum_probs=34.6
Q ss_pred ccCccEEeeCCCCCCchHHHHHHHHHhCC-CcceEeeeeeee-c-cc-ccccchhh
Q 043341 439 KEGITHALRSSEYHDRNAQYYRIQEDLGV-RKVHIYEFSRLN-M-VY-TLLSKRKL 490 (758)
Q Consensus 439 ~~githvirg~d~~~~~~~~~~l~~alg~-~~p~~~~~~~l~-~-~~-~klSKR~~ 490 (758)
..+.+++.-|.|...+...-.-+...+|. ..|...+..+|+ + .| .|||||..
T Consensus 208 ~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ 263 (383)
T PTZ00126 208 YLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDP 263 (383)
T ss_pred ccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCC
Confidence 45678888899976555555666778885 456554445554 4 23 59999984
No 215
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=95.29 E-value=0.038 Score=68.37 Aligned_cols=96 Identities=10% Similarity=-0.053 Sum_probs=66.1
Q ss_pred ccEEeeCCCCCC-chHHHHHHHHHh-CCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHD-RNAQYYRIQEDL-GVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~-~~~~~~~l~~al-g~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
++..+-|.|++. ......+..-++ |..+| .++.|+++.. .|+|||||+++ ..+..++.++
T Consensus 565 ~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGN---------------vI~p~d~i~~- 628 (861)
T TIGR00392 565 ADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGN---------------VVDPLKVINK- 628 (861)
T ss_pred ceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCC---------------CCCHHHHHHH-
Confidence 344445777753 222222222222 54444 5666788764 79999999974 3366777777
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHHHHHhhccc
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDP 554 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~ 554 (758)
|++|++|.|++.. ...++..|+++.+...++.+...
T Consensus 629 yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~ 664 (861)
T TIGR00392 629 YGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKI 664 (861)
T ss_pred cCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHH
Confidence 9999999999988 78899999999998877655554
No 216
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=95.22 E-value=0.058 Score=60.62 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=42.4
Q ss_pred CCCCC-ccchhhHHHHHHHHHHcccCceEEEEecC----C-Ccc-c----------chHHHHHHHHHHHHHhCCCCCC--
Q 043341 257 EPSGY-LHIGHSKAALLNQYFAQRYQGQLIVRFDD----T-NPA-K----------ESNEFVDNLLKDIETLGIKYET-- 317 (758)
Q Consensus 257 ~PtG~-lHiGhar~al~n~~~Ar~~~G~~ilRieD----t-d~~-r----------~~~~~~~~i~~dl~~LGi~~d~-- 317 (758)
-|||. |||||.-+ +..+..-...|...+.=|-| + ||. + ...++.+.|.+-+ ..|++++.
T Consensus 41 dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~ql-~~~ld~~k~~ 118 (408)
T PRK05912 41 DPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKEQL-FKFLDFEKDG 118 (408)
T ss_pred cCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHHHH-HHhcCcCcCc
Confidence 47895 99999884 55555445555555555544 2 343 1 2234455555544 77888875
Q ss_pred --cccccCCHHH
Q 043341 318 --VTYTSDYFPD 327 (758)
Q Consensus 318 --~~~~S~~~~~ 327 (758)
++.+|+..+.
T Consensus 119 ~~i~~nsd~~~~ 130 (408)
T PRK05912 119 AEIVNNSDWLGK 130 (408)
T ss_pred EEEEECCCcCCc
Confidence 6788887653
No 217
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.07 E-value=0.057 Score=45.15 Aligned_cols=48 Identities=31% Similarity=0.410 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHhcCCC---eeeeec--------CCccEEEeCCCcEEechHHHHHHH
Q 043341 48 ADSPPLLVIAAAKLAGIT---IPTETS--------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 48 ~s~~~~~v~i~l~~~gl~---~~~~~~--------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
.++-|.++.+.+++++.+ |+++.. |++|+|...++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPWLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCCcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 567889999999999999 888764 999999987889999999999998
No 218
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.032 Score=67.66 Aligned_cols=88 Identities=25% Similarity=0.328 Sum_probs=65.4
Q ss_pred CCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEecCCC-------------------------cc----cc---hHHH
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRFDDTN-------------------------PA----KE---SNEF 300 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRieDtd-------------------------~~----r~---~~~~ 300 (758)
||..||.+|||||.+=++-+.+-|. ..|..+-|.-.-| .+ .| ..++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 4999999999999999999988873 3455555542111 11 11 2257
Q ss_pred HHHHHHHHHHhCCC--CCCcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 301 VDNLLKDIETLGIK--YETVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 301 ~~~i~~dl~~LGi~--~d~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
++...++.+.||+- |+.+|.+-+ +++....+..+|.++|++|
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGlly 182 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLY 182 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCee
Confidence 78899999999986 556666544 7778888999999999999
No 219
>PLN02886 aminoacyl-tRNA ligase
Probab=94.89 E-value=0.084 Score=58.45 Aligned_cols=74 Identities=19% Similarity=0.106 Sum_probs=50.0
Q ss_pred eeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----C--cccchHHHHHHHHHHHHHhCCCCC--Ccccc
Q 043341 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----N--PAKESNEFVDNLLKDIETLGIKYE--TVTYT 321 (758)
Q Consensus 250 v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d--~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~ 321 (758)
|.+=|- |||.+||||.-.++-+|.--.. +.+++.=|.|. + ......+....+..++-.+|++++ .++.|
T Consensus 49 v~sGiq--PSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~Q 125 (389)
T PLN02886 49 VVSGVQ--PTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFVQ 125 (389)
T ss_pred EEEEEC--CCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEEe
Confidence 556555 6799999999988887765543 44544555542 1 122334555667778888999998 67889
Q ss_pred cCCHH
Q 043341 322 SDYFP 326 (758)
Q Consensus 322 S~~~~ 326 (758)
|+..+
T Consensus 126 S~v~e 130 (389)
T PLN02886 126 SHVPA 130 (389)
T ss_pred CCCch
Confidence 98544
No 220
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=94.74 E-value=0.036 Score=68.58 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=58.2
Q ss_pred ccchhhHHHHHHHHHHc--ccCceEEEEecCCC----c------------------------------------ccchHH
Q 043341 262 LHIGHSKAALLNQYFAQ--RYQGQLIVRFDDTN----P------------------------------------AKESNE 299 (758)
Q Consensus 262 lHiGhar~al~n~~~Ar--~~~G~~ilRieDtd----~------------------------------------~r~~~~ 299 (758)
|||||+++.++.+.+|| ...|.-+++.-..| | ......
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 79999999999999998 34577676642111 1 111224
Q ss_pred HHHHHHHHHHHhCCCCC--CcccccC--CHHHHHHHHHHHHHhCcee
Q 043341 300 FVDNLLKDIETLGIKYE--TVTYTSD--YFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d--~~~~~S~--~~~~~~~~~~~Li~~G~aY 342 (758)
|.+.+.++++.||+..| ..+.+.+ |....+....+|.++|++|
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliy 127 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIV 127 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEe
Confidence 55889999999998654 5555544 5566778889999999999
No 221
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.67 E-value=0.074 Score=66.48 Aligned_cols=68 Identities=12% Similarity=0.020 Sum_probs=53.2
Q ss_pred eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.++.|+++.. .|+|||||+++ ..+..++.++ |++|++|.|+++.+...++..|+++.+....+
T Consensus 578 ~v~~hG~Vld~~G~KMSKSlGN---------------vIdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~ 641 (975)
T PRK06039 578 NVLVHGHVLDEDGQKMSKSLGN---------------YVDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641 (975)
T ss_pred EEEEeeeEECCCCCCcCCCCCC---------------cCCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHH
Confidence 5667777664 78999999974 3366777777 99999999999987778999999999555555
Q ss_pred hhccc
Q 043341 550 KIIDP 554 (758)
Q Consensus 550 ~~l~~ 554 (758)
..+.+
T Consensus 642 ~~l~k 646 (975)
T PRK06039 642 KFLLT 646 (975)
T ss_pred HHHHH
Confidence 55554
No 222
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=94.65 E-value=0.16 Score=60.34 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=42.7
Q ss_pred CCCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Ccc-----cchHHHHHHHHHHHHHhCCCCC--CcccccCC
Q 043341 256 PEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NPA-----KESNEFVDNLLKDIETLGIKYE--TVTYTSDY 324 (758)
Q Consensus 256 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~~-----r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~ 324 (758)
=.|||.|||||..-..++.....+.|...++=|.|. ++. +........+..++..+|++++ .+++||+.
T Consensus 39 i~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~ 118 (682)
T PTZ00348 39 FEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEE 118 (682)
T ss_pred eCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHh
Confidence 458899999994221333333345566666666553 221 1122223467778889999998 57889984
Q ss_pred H
Q 043341 325 F 325 (758)
Q Consensus 325 ~ 325 (758)
+
T Consensus 119 i 119 (682)
T PTZ00348 119 I 119 (682)
T ss_pred h
Confidence 4
No 223
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.43 E-value=0.15 Score=41.61 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=43.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEE--echHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKL--QGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l--~ES~aIl~yL 95 (758)
++|| +.+.+++|.+++.++...|++|....+ ..+|+|.+ +|..+ +++.+|-.+|
T Consensus 2 i~lf--~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVY--TTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEE--cCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-CCEEEeeCCHHHHHHHh
Confidence 5777 888999999999999999999887543 68999998 67777 5666665554
No 224
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=94.20 E-value=0.26 Score=45.07 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHHhc--CCCeeeeecCCccEEE-eCCCcEEechHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhccccCC-----h
Q 043341 54 LVIAAAKLA--GITIPTETSGSAPTFS-FSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSS-----G 125 (758)
Q Consensus 54 ~v~i~l~~~--gl~~~~~~~g~vP~L~-~~~g~~l~ES~aIl~yL~~~~~L~p~~~~era~v~~wl~~~~~~l~-----~ 125 (758)
++-+++++. ++.++..+....|.|. ..+|+.|+|++||++|++.-|.-......+.+ +.-....+. .
T Consensus 14 KlalA~~~~~~~lk~~v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~es~e~e~a-----~~~lE~~ly~k~~~~ 88 (122)
T PF09635_consen 14 KLALALEYAQKDLKLEVNEDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQESIEYEFA-----LSSLENVLYHKSNKK 88 (122)
T ss_dssp HHHHHHHH--STT--EE-SS--S--EEE-S--S----HHHHHHHHTT--TTTTSHHHHHH-----HHHTTTGGGSSS--H
T ss_pred HHHHHHHHhCCCCeeeeCCccccceeeecCCceEEecccHHHHHHHhhcCCcchHHHHHH-----HHHHHHHHhcccccH
Confidence 455555554 5666665556678884 45899999999999999987621222222222 222223222 2
Q ss_pred HHHHHHHH-HHHHhcccCCcccCCCCCHhHHHHHHHH
Q 043341 126 SEFENACT-YVDKYLERRTFVVGHSLSIVDIAIWSAL 161 (758)
Q Consensus 126 ~~l~~~L~-~Le~~L~~~~flvG~~lTlADi~l~~~L 161 (758)
+.+..+.. .++++|.. ..+.+|.++|.+|..+
T Consensus 89 e~v~~~~~k~l~~yl~~----~~e~lsAt~lIlFAn~ 121 (122)
T PF09635_consen 89 EHVESAVNKSLDNYLTS----LKEPLSATQLILFANV 121 (122)
T ss_dssp HHHHHHHHHHHHHT-S-------SS--HHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhhh----hcCCCCHHHheeeeec
Confidence 45554444 56666532 3567899999998865
No 225
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=93.91 E-value=0.1 Score=65.55 Aligned_cols=67 Identities=12% Similarity=-0.057 Sum_probs=51.4
Q ss_pred eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.++.|+++.. .|+|||||+++. ....++.++ |++|++|.|++..+....+..|+++.+...+
T Consensus 524 ~V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~- 586 (1052)
T PRK14900 524 TVYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGYR- 586 (1052)
T ss_pred eeEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHHH-
Confidence 5777888877 899999999642 244566666 8999999999988778899999999876543
Q ss_pred hhccc
Q 043341 550 KIIDP 554 (758)
Q Consensus 550 ~~l~~ 554 (758)
+.++.
T Consensus 587 ~f~nk 591 (1052)
T PRK14900 587 AFANK 591 (1052)
T ss_pred HHHHH
Confidence 34443
No 226
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=93.90 E-value=0.16 Score=47.64 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++++..|..|+..|.......| ++|+.||.+|+.|+.+ ....++ .--|+|.+|+++|.+.
T Consensus 62 ~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~L-tivkgi---~~P~~V~~Y~~~~s~~ 121 (132)
T PF04399_consen 62 AELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSL-TIVKGI---QWPPKVRAYMDRMSKA 121 (132)
T ss_dssp HHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHH-CTCTTS------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhh-hhccCC---cCCHHHHHHHHHHHHH
Confidence 6788889999999886666555 8999999999999986 334443 2347899999999886
No 227
>PLN02959 aminoacyl-tRNA ligase
Probab=93.79 E-value=0.11 Score=65.30 Aligned_cols=9 Identities=56% Similarity=0.885 Sum_probs=6.5
Q ss_pred CCCCCCCcc
Q 043341 500 DGWDDPRFP 508 (758)
Q Consensus 500 ~gwddpr~~ 508 (758)
++++|-++.
T Consensus 750 ~~~~D~nF~ 758 (1084)
T PLN02959 750 DGVDDANFV 758 (1084)
T ss_pred CccCCCCcc
Confidence 577888774
No 228
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=93.75 E-value=0.12 Score=56.53 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=46.7
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----C---cccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----N---PAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d---~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++.++..-...+..+++ |.|. + ...+..++...+..++-.+|++++ .++.||+..+
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~-IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e 87 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVL-IADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPE 87 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEE-EccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchH
Confidence 367999999999999998554444444444 4331 1 122334556667777888999998 5778999855
No 229
>PLN02843 isoleucyl-tRNA synthetase
Probab=93.70 E-value=0.15 Score=63.71 Aligned_cols=85 Identities=11% Similarity=-0.085 Sum_probs=56.9
Q ss_pred eeCCCCC-CchHHHHHHHHHh-CCCc-ceEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHc-----
Q 043341 446 LRSSEYH-DRNAQYYRIQEDL-GVRK-VHIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRR----- 516 (758)
Q Consensus 446 irg~d~~-~~~~~~~~l~~al-g~~~-p~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~----- 516 (758)
+=|.|.+ +.-....|...++ |..+ -.+|.|+++.. .|+|||||+++. .+..++.+.
T Consensus 569 ~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNv---------------I~p~~vi~~~~~~~ 633 (974)
T PLN02843 569 LEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNV---------------VDPRLVIEGGKNQK 633 (974)
T ss_pred eeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCc---------------CCHHHHHhhccccc
Confidence 3377765 2334444443333 5432 36788887655 799999999743 245556652
Q ss_pred ---CCCHHHHHHHHHHhccccccccccHHHHHH
Q 043341 517 ---GLLVEALIQFILEQGASKNLNLMEWDKLWT 546 (758)
Q Consensus 517 ---G~~~eal~~~~~~~g~~~~~~~~d~~~l~~ 546 (758)
-|+++++|.|+++ ..+.++..|+.+.|..
T Consensus 634 ~~~~yGaD~lR~~l~~-~~~~~d~~~s~~~l~~ 665 (974)
T PLN02843 634 QEPAYGADVLRLWVAS-VDYTGDVLIGPQILKQ 665 (974)
T ss_pred cccccChHHHHHHHHh-cccCCCceeCHHHHHH
Confidence 2899999999987 4778899999887763
No 230
>PLN02943 aminoacyl-tRNA ligase
Probab=93.57 E-value=0.084 Score=65.74 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=54.5
Q ss_pred eEeeeeeee-cccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 471 HIYEFSRLN-MVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 471 ~~~~~~~l~-~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
.+|.|+++. ..|+|||||+++ ..+..++.++ |+++++|.|++.. .+.++..|+++.|.. |+
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN---------------~i~p~~~i~~-ygaDalR~~l~~~-~~~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGN---------------VIDPLDTIKE-FGTDALRFTLALG-TAGQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCC---------------CCCHHHHHHh-cCChHHHHHHHhC-CCCCCccccHHHHHH-HH
Confidence 688888775 689999999974 3356677777 9999999999885 568999999999876 67
Q ss_pred hhccccCC
Q 043341 550 KIIDPVCP 557 (758)
Q Consensus 550 ~~l~~~~~ 557 (758)
+.++.+-+
T Consensus 631 ~~~~kl~N 638 (958)
T PLN02943 631 AFTNKLWN 638 (958)
T ss_pred HHHHHHHH
Confidence 76665433
No 231
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.52 E-value=0.13 Score=56.90 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=48.7
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Cc---ccchHHHHHHHHHHHHHhCCCCC--CcccccCCH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NP---AKESNEFVDNLLKDIETLGIKYE--TVTYTSDYF 325 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~---~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~ 325 (758)
.|||.+||||.-+++-+|.- .+.++.++.=|.|. ++ .....+....+..++-.+|++++ .++.||+.-
T Consensus 10 qPSG~~HLGnylG~ik~wv~-lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~ 86 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVK-LQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVP 86 (398)
T ss_pred CCCCcchHHHHHHHHHHHHH-HhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCch
Confidence 48899999999998877663 34466655556552 22 23344556667888889999998 678899974
No 232
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.47 E-value=0.21 Score=42.76 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=38.0
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEE
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKL 85 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l 85 (758)
|.++|| +.+.+++|.+++-+|..+|++|+...+ ..+|+++. ++..+
T Consensus 1 ~~v~lY--t~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~~~~~ 61 (81)
T PRK10329 1 MRITIY--TRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA-GDLSW 61 (81)
T ss_pred CEEEEE--eCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE-CCEEE
Confidence 346888 888999999999999999999988654 68999998 55544
No 233
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.46 E-value=0.3 Score=40.58 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=42.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLL 92 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl 92 (758)
++|| +.+.++.|.+++.+|..+|++|+...+ ..+|++.. ||..|-+-..+.
T Consensus 3 v~ly--~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i-~~~~iGg~~~~~ 69 (73)
T cd03027 3 VTIY--SRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF-NEKLVGGLTDLK 69 (73)
T ss_pred EEEE--ecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEeCHHHHH
Confidence 5778 888999999999999999999998654 68999988 777776655544
No 234
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.35 E-value=0.42 Score=41.05 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=50.3
Q ss_pred ceeEEEecccCCCCcHHHHHHHHHh-----cCCCeeeeec--------------C----CccEEEeCCCcEEechHHHHH
Q 043341 37 MTMEIKVLSFPADSPPLLVIAAAKL-----AGITIPTETS--------------G----SAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 37 M~m~L~~l~~~~s~~~~~v~i~l~~-----~gl~~~~~~~--------------g----~vP~L~~~~g~~l~ES~aIl~ 93 (758)
|.+++| +.+.+++|.+++-+|.. .|++|+...+ + .+|++.+ ||..+.+...|..
T Consensus 1 m~v~iy--~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi-~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIF--GRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV-DQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEE--eCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE-CCEEEcCHHHHHH
Confidence 557888 88899999999999988 7898887432 3 6999988 8999999999999
Q ss_pred HHHHhC
Q 043341 94 YIGRVG 99 (758)
Q Consensus 94 yL~~~~ 99 (758)
++.+.+
T Consensus 78 ~~~~~~ 83 (85)
T PRK11200 78 YVKENL 83 (85)
T ss_pred HHHHhc
Confidence 987754
No 235
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=93.23 E-value=0.24 Score=61.55 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=58.4
Q ss_pred ccEEeeCCCCCC-chHHHHHHHH-HhCCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHD-RNAQYYRIQE-DLGVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~-~~~~~~~l~~-alg~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
.+..+-|.|++. .-....|.-- ..|..++ .++.|+++.. .|+|||||+++.. +...+.++
T Consensus 546 ~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvI---------------dP~~ii~~- 609 (912)
T PRK05743 546 ADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVI---------------DPQDVIKK- 609 (912)
T ss_pred ceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcC---------------CHHHHHHh-
Confidence 333444777762 1112222222 2355544 4566787764 8999999997533 45567776
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHH
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWT 546 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~ 546 (758)
|++|++|.|++. +...++..|+.+.|..
T Consensus 610 yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 610 YGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred cChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 999999999997 6778899999988765
No 236
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.17 E-value=0.21 Score=55.79 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCCCCccchhhHHHHHHHHHHcc-cCceEEEEecC-------CCcccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQR-YQGQLIVRFDD-------TNPAKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~-~~G~~ilRieD-------td~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-+++-||.-... .+..++.=|-| .||++. .+....+..++-.+|++|+ .+++||+.-+
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~l-r~~~~e~aa~~LA~GlDPek~~if~QSdvpe 88 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARI-QRSTLEIAATWLAAGLDPERVTFYRQSDIPE 88 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHH-HHHHHHHHHHHHHhCCCccceEEEECCcchh
Confidence 58999999999999988877753 34455554544 244333 3444557777888999998 6788999653
No 237
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.95 E-value=0.4 Score=39.76 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=46.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------C-CccEEEeCCCcEEechHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------G-SAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g-~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
++|| +.+.+++|.+++.+|...|++|+...+ . .+|++.+ +|..+.+...+.++-
T Consensus 2 i~ly--~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i-~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIY--TKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI-GDVHIGGCDDLYALE 72 (75)
T ss_pred EEEE--eCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE-CCEEEeChHHHHHHH
Confidence 4677 888999999999999999999998654 2 8999998 888899988888764
No 238
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=92.89 E-value=0.4 Score=38.71 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=44.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
+++| +.+.++.|.+++.++..++++|+...+ .++|++.. +|..+.++..|.+.
T Consensus 2 v~ly--~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~-~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVF--SKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI-NGEFIGGYDDLKAL 70 (72)
T ss_pred EEEE--ECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEEecHHHHHHh
Confidence 4677 788899999999999999999887543 58999988 88999998887754
No 239
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=92.73 E-value=0.23 Score=41.16 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=40.3
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-----------------CCccEEEeCCCcEEechH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-----------------GSAPTFSFSNGSKLQGTY 89 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-----------------g~vP~L~~~~g~~l~ES~ 89 (758)
++|| +.+.+++|.+++..+...|++|+...+ ..+|+++.++|..+.++.
T Consensus 2 v~ly--~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 2 ITVY--GTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred EEEE--ECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 5677 888999999999999999999887543 689999888888876543
No 240
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=92.24 E-value=0.28 Score=58.24 Aligned_cols=83 Identities=10% Similarity=-0.078 Sum_probs=49.7
Q ss_pred ccEEeeCCCCCCchHHHHH-HHHHhCCC--cceEeeeeeee-cccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcC
Q 043341 442 ITHALRSSEYHDRNAQYYR-IQEDLGVR--KVHIYEFSRLN-MVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRG 517 (758)
Q Consensus 442 ithvirg~d~~~~~~~~~~-l~~alg~~--~p~~~~~~~l~-~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G 517 (758)
++-.+-|.|++..--.... +.-++--. ...+..++++. ..|+|||||+++. .+...+.++
T Consensus 515 ~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv---------------i~p~~ii~~- 578 (601)
T PF00133_consen 515 VDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNV---------------IDPEDIIEK- 578 (601)
T ss_dssp BSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH-
T ss_pred cccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcc---------------cCHHHHHHH-
Confidence 4555668887744333333 33344322 34667777765 5799999999753 377788888
Q ss_pred CCHHHHHHHHHHhcccccccccc
Q 043341 518 LLVEALIQFILEQGASKNLNLME 540 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d 540 (758)
|+.|++|.|++..+-...+.+||
T Consensus 579 yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 579 YGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp T-HHHHHHHHHHHS-TTS-EEE-
T ss_pred hCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999765655555553
No 241
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.19 E-value=0.91 Score=51.00 Aligned_cols=30 Identities=23% Similarity=0.670 Sum_probs=24.9
Q ss_pred eeeecc-CCCCCCCccchhhHHHHHHHHHHc
Q 043341 249 KVRLRF-APEPSGYLHIGHSKAALLNQYFAQ 278 (758)
Q Consensus 249 ~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar 278 (758)
++|+-| .||-.-++|+||.|+-+++-..|+
T Consensus 111 ~iVVefSSPNIAK~FHvGhLRsTiiG~flan 141 (567)
T KOG1195|consen 111 KIVVEFSSPNIAKPFHVGHLRSTIIGNFLAN 141 (567)
T ss_pred eEEEEecCCCcccccccchhhhhhhhhHhhh
Confidence 455555 689999999999999999888884
No 242
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.01 E-value=0.3 Score=53.51 Aligned_cols=69 Identities=28% Similarity=0.278 Sum_probs=44.2
Q ss_pred CCCCCccchhhHHHHHHHHHHcccCceEEEEecCC----Cc--ccchHHHHHHHHHHHHHhCCCCC--CcccccCCHH
Q 043341 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT----NP--AKESNEFVDNLLKDIETLGIKYE--TVTYTSDYFP 326 (758)
Q Consensus 257 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDt----d~--~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~~~~ 326 (758)
.|||.+||||.-.++-++..-.. ....++=|.|. ++ .....+....+..++-.+|++++ .++.||+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~-~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~ 85 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQD-EYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE 85 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHh-cCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch
Confidence 48899999999988776542222 13333334431 21 22334555667777778999998 5778998654
No 243
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=91.71 E-value=0.35 Score=60.39 Aligned_cols=83 Identities=12% Similarity=-0.020 Sum_probs=56.1
Q ss_pred eeCCCCCCchHHHHHHHHHh---CCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCH
Q 043341 446 LRSSEYHDRNAQYYRIQEDL---GVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLV 520 (758)
Q Consensus 446 irg~d~~~~~~~~~~l~~al---g~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~ 520 (758)
+=|.|.+. .=-|..++.++ |..++ .++.|+++.. .|+|||||+++.. ....+.+. |++
T Consensus 588 ~eG~Di~r-gWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvI---------------dP~~ii~~-yGa 650 (961)
T PRK13804 588 LEGSDQHR-GWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTV---------------SPQDVIKQ-SGA 650 (961)
T ss_pred EEEccccc-HHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcC---------------CHHHHHHh-cCH
Confidence 34677642 11222344444 33333 6778888775 8999999996432 44566666 999
Q ss_pred HHHHHHHHHhccccccccccHHHHHH
Q 043341 521 EALIQFILEQGASKNLNLMEWDKLWT 546 (758)
Q Consensus 521 eal~~~~~~~g~~~~~~~~d~~~l~~ 546 (758)
|++|.|+++ +...++..|+++.|..
T Consensus 651 D~lRl~lls-~~~~~D~~fs~~~l~~ 675 (961)
T PRK13804 651 DILRLWVAS-VDYSDDQRIGKEILKQ 675 (961)
T ss_pred HHHHHHHHh-CCCCCCcccCHHHHHH
Confidence 999999997 4678899999987655
No 244
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=91.63 E-value=0.49 Score=38.44 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=37.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQG 87 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~E 87 (758)
+++| +...+++|.+++.++...|++|+...+ +.+|++.+ +|..+.+
T Consensus 2 v~l~--~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~~~~i~g 63 (73)
T cd02976 2 VTVY--TKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI-GDEHLSG 63 (73)
T ss_pred EEEE--eCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE-CCEEEec
Confidence 4677 778899999999999999999887543 68999998 6666654
No 245
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.44 E-value=0.47 Score=44.20 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 126 ~~l~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
++++..|..|+..+..... ++.++|+.||.+|+.|+.+ ....++ .--|+|.+|+++|++.
T Consensus 63 ~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~L-t~vkgi---~~P~~V~~Y~~~~s~~ 122 (128)
T cd03199 63 AALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNL-TLVKGL---VFPPKVKAYLERMSAL 122 (128)
T ss_pred HHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhh-hhhcCC---CCCHHHHHHHHHHHHH
Confidence 5678888888888854444 4558999999999999986 333433 2347899999999886
No 246
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=91.29 E-value=0.33 Score=59.54 Aligned_cols=87 Identities=11% Similarity=-0.017 Sum_probs=59.1
Q ss_pred cCccEEeeCCCCCCc-----hHHHHHHHHHhC---CCcc--eEeeeeeeecccccccchhhhhhhhcCccCCCCCCCcch
Q 043341 440 EGITHALRSSEYHDR-----NAQYYRIQEDLG---VRKV--HIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPT 509 (758)
Q Consensus 440 ~githvirg~d~~~~-----~~~~~~l~~alg---~~~p--~~~~~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~t 509 (758)
+-++..+-|.||... .--+. ++..+| -..| .+++++++ |||||+++ ..+
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~-~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN---------------~i~ 580 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTK-VLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGN---------------VVD 580 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH-HHHHhhcccCCcchhhheecCcE-----EeCCCCCC---------------CCC
Confidence 345666667776533 22221 222223 1234 45556676 99999974 347
Q ss_pred HHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 510 VQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 510 l~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
..++.++ |+++++|.|++..+..+++.+|+.+.+....
T Consensus 581 p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~ 618 (805)
T PRK00390 581 PDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGAY 618 (805)
T ss_pred HHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHHH
Confidence 7888887 9999999999998899999999988877653
No 247
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.24 E-value=0.5 Score=39.14 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=36.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec---------------CCccEEEeCCCcEE
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS---------------GSAPTFSFSNGSKL 85 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~---------------g~vP~L~~~~g~~l 85 (758)
++|| +.+.++.|.+++-+|+..|++|+...+ ..+|++.++|+..+
T Consensus 1 v~ly--~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~ 60 (72)
T TIGR02194 1 ITVY--SKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSW 60 (72)
T ss_pred CEEE--eCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEE
Confidence 3677 888999999999999999999998654 48999998443333
No 248
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.06 E-value=4 Score=45.02 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=36.5
Q ss_pred CCccccCeeeecc-CCCCCCCccchhhHHHHHHHHHHcc--cCceEEEEe
Q 043341 242 LPDAEIGKVRLRF-APEPSGYLHIGHSKAALLNQYFAQR--YQGQLIVRF 288 (758)
Q Consensus 242 ~~~~~~~~v~~Rf-aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilRi 288 (758)
+|......|++-| .||----||+||+|+-++++.++|. +-|.=+||.
T Consensus 182 ~P~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~ 231 (656)
T KOG4426|consen 182 LPTLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRR 231 (656)
T ss_pred CcccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEee
Confidence 4444445566766 5777889999999999999999994 567777886
No 249
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.74 E-value=0.13 Score=61.99 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=62.1
Q ss_pred ccCccEEeeCCCCCCchHHHHHHH-HHh---C-CC--cc--eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcc
Q 043341 439 KEGITHALRSSEYHDRNAQYYRIQ-EDL---G-VR--KV--HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFP 508 (758)
Q Consensus 439 ~~githvirg~d~~~~~~~~~~l~-~al---g-~~--~p--~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~ 508 (758)
-+.|+-=|-|.||..+.=.+.-+. ++| | |+ .| ....-|++-. .|+|||||+++ ..
T Consensus 524 W~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN---------------~v 588 (814)
T COG0495 524 WYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN---------------VV 588 (814)
T ss_pred ccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCC---------------CC
Confidence 334555555777765443333222 222 2 32 23 2334477777 68999999964 33
Q ss_pred hHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHH
Q 043341 509 TVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINK 549 (758)
Q Consensus 509 tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~ 549 (758)
++..+.+. |++|++|.|++..|...++..++-+.+..+.|
T Consensus 589 ~p~~~i~~-yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~r 628 (814)
T COG0495 589 DPEEAVEK-YGADTVRLYIMFAAPPEQDLEWSESGVEGARR 628 (814)
T ss_pred CHHHHHHH-hCchHHHHHHHhhCChhhCCCCChhhhHHHHH
Confidence 67788888 99999999999998888888887766655544
No 250
>PLN02882 aminoacyl-tRNA ligase
Probab=90.50 E-value=0.63 Score=59.09 Aligned_cols=70 Identities=7% Similarity=0.025 Sum_probs=49.4
Q ss_pred CCCcc-eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccc-cccccccHH
Q 043341 466 GVRKV-HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGAS-KNLNLMEWD 542 (758)
Q Consensus 466 g~~~p-~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~-~~~~~~d~~ 542 (758)
|..++ .++.|+++.. .|+|||||+++.. ....+.++ |++|++|.|+++.... ..+..|+++
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNvI---------------dP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNYP---------------DPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCCC---------------CHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 55555 4555688877 6999999997432 33456666 8999999999876443 455789888
Q ss_pred HHHHHHHhh
Q 043341 543 KLWTINKKI 551 (758)
Q Consensus 543 ~l~~~n~~~ 551 (758)
.+....++.
T Consensus 658 ~v~~~~~~~ 666 (1159)
T PLN02882 658 GVFGVVKDV 666 (1159)
T ss_pred HHHHHHHHH
Confidence 877654443
No 251
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=89.91 E-value=0.73 Score=58.54 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=60.2
Q ss_pred cEEeeCCCCC-CchHHHHHHHHHhCCCcc--eEeeeeeeec-ccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCC
Q 043341 443 THALRSSEYH-DRNAQYYRIQEDLGVRKV--HIYEFSRLNM-VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGL 518 (758)
Q Consensus 443 thvirg~d~~-~~~~~~~~l~~alg~~~p--~~~~~~~l~~-~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~ 518 (758)
+.++=|.|.+ +.-.....+--++--..| .++.||++-- .|+|||||+++.. || ..+.++ |
T Consensus 675 D~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvI----------DP-----~evI~k-Y 738 (1205)
T PTZ00427 675 DFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYP----------DP-----LYILDK-Y 738 (1205)
T ss_pred eEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCC----------CH-----HHHHHh-c
Confidence 3344466654 233333333333332344 5666787764 7999999997432 33 345555 8
Q ss_pred CHHHHHHHHHHhcc-ccccccccHHHHHHHHHhhcc
Q 043341 519 LVEALIQFILEQGA-SKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 519 ~~eal~~~~~~~g~-~~~~~~~d~~~l~~~n~~~l~ 553 (758)
++|++|.|+++.+. ...+..|+.+.+....++.+.
T Consensus 739 GADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~ 774 (1205)
T PTZ00427 739 GADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFIL 774 (1205)
T ss_pred CCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHH
Confidence 99999999998644 357889999988766666554
No 252
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.91 E-value=1.2 Score=49.71 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=47.8
Q ss_pred CCCCCC-CccchhhHHHHH-HHHHHcccC-----ceEEEEecCC-Cc-----ccchHHHHHHHHHHHHHhCCCCC---Cc
Q 043341 255 APEPSG-YLHIGHSKAALL-NQYFAQRYQ-----GQLIVRFDDT-NP-----AKESNEFVDNLLKDIETLGIKYE---TV 318 (758)
Q Consensus 255 aP~PtG-~lHiGhar~al~-n~~~Ar~~~-----G~~ilRieDt-d~-----~r~~~~~~~~i~~dl~~LGi~~d---~~ 318 (758)
--.||| .|||||+-.... .++-.-++. |.+.-.|.|= -+ ....+.+.+.+....+.+|...| .+
T Consensus 38 GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~ 117 (401)
T COG0162 38 GFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEF 117 (401)
T ss_pred eeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEE
Confidence 356899 999999988753 333333333 3333444443 11 11223445666666777886666 56
Q ss_pred ccccCCHHHHHHHHHHHHHhCcee
Q 043341 319 TYTSDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 319 ~~~S~~~~~~~~~~~~Li~~G~aY 342 (758)
.+.|+.+..+. +.+-|.+-|.-|
T Consensus 118 v~ns~w~~~~~-y~~~l~~~g~~~ 140 (401)
T COG0162 118 VNNSDWLKKLN-YLDFLRDVGKHF 140 (401)
T ss_pred EechHHhCcCC-HHHHHHHHHhHc
Confidence 67777665432 344444444433
No 253
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=89.81 E-value=1.1 Score=37.65 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=45.6
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
++| +.+.+++|..++-.++..|++|+...+ ..+|++.+ +|..+.+...+..+..+
T Consensus 2 ~ly--~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i-~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 2 TIY--TKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI-GDVHVGGCDDLYALDRE 72 (79)
T ss_pred EEE--ecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE-CCEEEcChHHHHHHHHc
Confidence 567 788899999999999999999998654 57999988 88888888777766543
No 254
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.93 E-value=1 Score=54.49 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=57.8
Q ss_pred cEEeeCCCCC-CchHHHHHHHHHhCCCcc--eEeeeeee-ecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCC
Q 043341 443 THALRSSEYH-DRNAQYYRIQEDLGVRKV--HIYEFSRL-NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGL 518 (758)
Q Consensus 443 thvirg~d~~-~~~~~~~~l~~alg~~~p--~~~~~~~l-~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~ 518 (758)
+..+.|-|.+ .-..+...+--+|.-+.| .++.|+.+ .-.|+|||||+++-. || -++.++ |
T Consensus 480 ~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvI----------DP-----~d~I~~-y 543 (877)
T COG0525 480 DLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVI----------DP-----LDVIDK-Y 543 (877)
T ss_pred ccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcC----------CH-----HHHHHH-h
Confidence 3344566655 345555544455655566 33344443 345889999997533 33 345566 8
Q ss_pred CHHHHHHHHHHhccccccccccHHHHH
Q 043341 519 LVEALIQFILEQGASKNLNLMEWDKLW 545 (758)
Q Consensus 519 ~~eal~~~~~~~g~~~~~~~~d~~~l~ 545 (758)
+.||+|.++...+..-.+..||++++.
T Consensus 544 GaDAlRf~la~~~~~G~Di~~~~~~~~ 570 (877)
T COG0525 544 GADALRFTLASLASPGRDINFDEKRVE 570 (877)
T ss_pred ChHHHHHHHHhccCCCcccCcCHHHHH
Confidence 999999999988777889999998766
No 255
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=88.04 E-value=0.71 Score=56.90 Aligned_cols=49 Identities=22% Similarity=0.012 Sum_probs=41.5
Q ss_pred cccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHH
Q 043341 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTIN 548 (758)
Q Consensus 484 klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n 548 (758)
|||||+++ ..++.++.++ |+++++|.|++..+..+.+.+|+.+.+....
T Consensus 604 KMSKS~GN---------------~v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~ 652 (842)
T TIGR00396 604 KMSKSKGN---------------GIDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEGAR 652 (842)
T ss_pred hhhhcCCC---------------cCCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHHHH
Confidence 99999974 4478888888 9999999999988888999999988886543
No 256
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=87.95 E-value=0.92 Score=46.12 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcccCCcccCCCCCHhHHHHHHHHhhhhcccccccccccChhHHHHHHHHHhh
Q 043341 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190 (758)
Q Consensus 129 ~~~L~~Le~~L~~~~flvG~~lTlADi~l~~~L~~l~~~~~~~~~~~~~P~L~rW~~~i~~~ 190 (758)
...++.++.+|.+++|.-|.+++-+|+.+|..+.-- +....+++..+||+.+.+.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e-------p~s~~~v~~~~w~~~l~a~ 64 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE-------PQSARLVNAERWYSKLEAL 64 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC-------cchhhhhHHHHHHHHHHHH
Confidence 567899999999999999999999999999987642 1245789999999999776
No 257
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=87.67 E-value=1.9 Score=36.70 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=41.9
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------CCccEEEeCCCcEEechHHHHHH
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
..++| ..+.+|+|.++.-+|..+|++|+...+ .+||++.+ ||..+.....+-.+
T Consensus 2 ~v~iy--t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i-~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIY--TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI-GGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEE--ECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE-CCEEEeCcccHHHH
Confidence 35778 888899999999999999999998433 68999999 66666554444443
No 258
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.57 E-value=1.6 Score=51.26 Aligned_cols=86 Identities=19% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCCCccchhhHHHHHHHH-----HHcccCceEEEEecCCC--------------------ccc-------chHHHHHHHH
Q 043341 258 PSGYLHIGHSKAALLNQY-----FAQRYQGQLIVRFDDTN--------------------PAK-------ESNEFVDNLL 305 (758)
Q Consensus 258 PtG~lHiGhar~al~n~~-----~Ar~~~G~~ilRieDtd--------------------~~r-------~~~~~~~~i~ 305 (758)
.+|.||+|||+.-++.+. +|.+++..|+.-.|.-- |-+ ...++++..+
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~ 145 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM 145 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 799999999999987544 44444433433332110 100 1225667777
Q ss_pred HHHHHhCCCCC--Cccc--ccCCHHHHHHHHHHHHHhCceec
Q 043341 306 KDIETLGIKYE--TVTY--TSDYFPDLMEMAENLIRQGKAYV 343 (758)
Q Consensus 306 ~dl~~LGi~~d--~~~~--~S~~~~~~~~~~~~Li~~G~aY~ 343 (758)
+..+.+||.-| .+|. +.+|.-.-.++..+|.++|++|.
T Consensus 146 e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR 187 (937)
T KOG0433|consen 146 EAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYR 187 (937)
T ss_pred HHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceec
Confidence 88888999755 4444 44566667788899999999994
No 259
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.70 E-value=0.62 Score=50.92 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCCCccccCeeeeccCCCCCCCccchhhHHHHH-HHHHHcccC--ceEEEEecCCC----------------cccchHH
Q 043341 239 EVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALL-NQYFAQRYQ--GQLIVRFDDTN----------------PAKESNE 299 (758)
Q Consensus 239 ~~~~~~~~~~~v~~RfaP~PtG~lHiGhar~al~-n~~~Ar~~~--G~~ilRieDtd----------------~~r~~~~ 299 (758)
..|.|+. .+.++|---|..+.-.|+||.-..++ .+.+||-+. |.--++|-.|| |...-++
T Consensus 7 ilp~~n~-rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdK 85 (567)
T KOG1247|consen 7 ILPAPNE-RNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDK 85 (567)
T ss_pred cccCCCc-cceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHh
Confidence 3455654 45699999999999999999887755 578888544 55667776666 3333345
Q ss_pred HHHHHHHHHHHhCCCCCCccccc--CCHHHHHHHHHHHHHhCc
Q 043341 300 FVDNLLKDIETLGIKYETVTYTS--DYFPDLMEMAENLIRQGK 340 (758)
Q Consensus 300 ~~~~i~~dl~~LGi~~d~~~~~S--~~~~~~~~~~~~Li~~G~ 340 (758)
|-.......+|++|++|+.-+.| ...++-+++..+|.++|+
T Consensus 86 yh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~ 128 (567)
T KOG1247|consen 86 YHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGY 128 (567)
T ss_pred cchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCC
Confidence 55666777899999999665543 356788999999988874
No 260
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=85.31 E-value=4.1 Score=35.08 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=45.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcC-----CCeeeeec--------------C----CccEEEeCCCcEEechHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAG-----ITIPTETS--------------G----SAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~g-----l~~~~~~~--------------g----~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
.++| +.+.+|+|.+++-+|...+ ++|+...+ | .||++.+ ||..+-++..|..++
T Consensus 2 V~vy--s~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi-~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIF--GRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV-DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEE--eCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE-CCEEecCHHHHHHHH
Confidence 3677 8889999999999998885 45554221 3 7999988 889999999999998
Q ss_pred HHhC
Q 043341 96 GRVG 99 (758)
Q Consensus 96 ~~~~ 99 (758)
.+.+
T Consensus 79 ~~~~ 82 (86)
T TIGR02183 79 KENF 82 (86)
T ss_pred Hhcc
Confidence 7754
No 261
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=84.94 E-value=1.8 Score=34.21 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=36.1
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEE
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKL 85 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l 85 (758)
++| +.+.++.|.+++-.|...|++|+...+ ..+|++.. ||..|
T Consensus 2 ~vy--~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i-~g~~I 60 (60)
T PF00462_consen 2 VVY--TKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI-DGKFI 60 (60)
T ss_dssp EEE--ESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE-TTEEE
T ss_pred EEE--EcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE-CCEEC
Confidence 566 778899999999999999999998654 78999998 77653
No 262
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=83.58 E-value=1.9 Score=38.67 Aligned_cols=39 Identities=49% Similarity=0.776 Sum_probs=28.6
Q ss_pred eccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCccc
Q 043341 252 LRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAK 295 (758)
Q Consensus 252 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r 295 (758)
+.|+.++ |++|+||...+-. . .....+.++.|.+.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~--a--~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR--A--KGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH--H--HHhCCcEEEEEcCCCccc
Confidence 5688999 9999999997433 2 222367889998877654
No 263
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=79.37 E-value=3 Score=52.64 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
|+.|++|.|++..+....+..|+.+.+... +..+.
T Consensus 640 yGaDalR~~l~~~~~~~~Di~~~~~~v~~~-~~f~n 674 (995)
T PTZ00419 640 CGTDALRFGLLAYTQQGRNINLDINRVVGY-RHFCN 674 (995)
T ss_pred cCcHHHHHHHHhcCCCCCCccccHHHHHHH-HHHHH
Confidence 799999999998777777889998877633 44444
No 264
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=79.21 E-value=7.3 Score=34.58 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=44.2
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHH
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
+..+| +-+.+|+|.++.-+|...|++|+...+ ..+|.+.+ +|..|-+...+...
T Consensus 9 ~Vvvy--sk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi-~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIF--SRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV-GGKLVGGLENVMAL 81 (99)
T ss_pred CEEEE--ECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE-CCEEEcCHHHHHHH
Confidence 36788 888999999999999999999887543 58999988 88888777766654
No 265
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=78.78 E-value=7.6 Score=32.45 Aligned_cols=56 Identities=13% Similarity=-0.008 Sum_probs=45.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
..+| +...+|+|..++-++...+++|+...+ ..+|++.. +|..+.++..|..+..+
T Consensus 2 v~~y--~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~-~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVF--SKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI-GGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEE--EcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE-CCEEEcCHHHHHHHHHc
Confidence 3566 777899999999999999998876432 47999987 88899999988887654
No 266
>PLN02381 valyl-tRNA synthetase
Probab=76.07 E-value=6.5 Score=49.81 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHH
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLW 545 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~ 545 (758)
|+.|++|.+++..+....+..+|+..+.
T Consensus 710 yGADalR~~l~~~~~~~~di~~~~~~v~ 737 (1066)
T PLN02381 710 CGTDALRFALVSYTAQSDKINLDILRVV 737 (1066)
T ss_pred cChHHHHHHHHcCCccccccCccHHHHH
Confidence 7899999999988776678888887654
No 267
>PLN02563 aminoacyl-tRNA ligase
Probab=73.48 E-value=3.7 Score=51.26 Aligned_cols=55 Identities=9% Similarity=0.063 Sum_probs=40.3
Q ss_pred cccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhhcc
Q 043341 482 YTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIID 553 (758)
Q Consensus 482 ~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~ 553 (758)
+.|||||+++- .....+.++ |++|++|.|++..+.......++.+.+.... ..|.
T Consensus 721 ~eKMSKSKGNv---------------VdP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g~~-rfL~ 775 (963)
T PLN02563 721 AHKMSKSRGNV---------------VNPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEGVH-RFLG 775 (963)
T ss_pred ccccccccCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHHHH-HHHH
Confidence 34999999642 234556666 9999999999988888888888877776543 3444
No 268
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=73.19 E-value=13 Score=31.10 Aligned_cols=55 Identities=13% Similarity=-0.022 Sum_probs=43.8
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCC--eeeeec-------------------CCccEEEeCCCcEEechHHHHHHHHH
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGIT--IPTETS-------------------GSAPTFSFSNGSKLQGTYVLLRYIGR 97 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~--~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~yL~~ 97 (758)
.+| +.+.+++|.+++-++...+++ |+...+ ..+|++.. +|..+.++..++.+..+
T Consensus 2 ~~f--~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i-~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 2 VVF--SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI-NGKFIGGCSDLLALYKS 77 (84)
T ss_pred EEE--ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE-CCEEEcCHHHHHHHHHc
Confidence 355 778899999999999999988 665432 47999988 88899999888887643
No 269
>PHA03050 glutaredoxin; Provisional
Probab=72.78 E-value=13 Score=33.65 Aligned_cols=52 Identities=12% Similarity=-0.014 Sum_probs=41.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCC---Ceeeeec-------------------CCccEEEeCCCcEEechHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGI---TIPTETS-------------------GSAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl---~~~~~~~-------------------g~vP~L~~~~g~~l~ES~aIl~ 93 (758)
+.+| +.+.+|+|.+++-+|...|+ +|+...+ ..||.+.+ +|..|-+...+..
T Consensus 15 V~vy--s~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI-~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIF--VKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF-GKTSIGGYSDLLE 88 (108)
T ss_pred EEEE--ECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE-CCEEEeChHHHHH
Confidence 6788 88899999999999999999 6655322 58999988 7888877666655
No 270
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=68.97 E-value=9.2 Score=42.67 Aligned_cols=49 Identities=4% Similarity=-0.242 Sum_probs=27.8
Q ss_pred ccEEeeCCCCCCchHHHHHHHHHhCCCcceEeee-eeeecccccccchhh
Q 043341 442 ITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEF-SRLNMVYTLLSKRKL 490 (758)
Q Consensus 442 ithvirg~d~~~~~~~~~~l~~alg~~~p~~~~~-~~l~~~~~klSKR~~ 490 (758)
.+.++-|.|...|.-.=.-+...++-..+..... .+.+..|.||||+..
T Consensus 178 ~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~ 227 (377)
T TIGR00234 178 VDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGG 227 (377)
T ss_pred CCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCC
Confidence 3366679998776555555555554332211111 123445789999964
No 271
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=67.96 E-value=18 Score=31.33 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=40.0
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+.+++|.+++-+|...|++|+...+ .++|.+.+ +|..|-+...+....
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi-~g~~iGG~~~l~~l~ 84 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV-NGELVGGCDIVKEMH 84 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE-CCEEEeCHHHHHHHH
Confidence 4788899999999999999998654 58999988 888888877777654
No 272
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=67.31 E-value=19 Score=31.73 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+.+|+|.+++-+|...|++|+...+ ..+|.+.+ ||..|-+...+....
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi-~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV-KGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE-CCEEEeChHHHHHHH
Confidence 6789999999999999999998654 58999998 888777766666543
No 273
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.29 E-value=9.6 Score=45.01 Aligned_cols=65 Identities=26% Similarity=0.414 Sum_probs=40.7
Q ss_pred eeeeccC-CCCCCCccchhhHHHH---HHHHHHcccCceEEE---EecCCCcccchHHHHHHHHHHHHHhCCCCC
Q 043341 249 KVRLRFA-PEPSGYLHIGHSKAAL---LNQYFAQRYQGQLIV---RFDDTNPAKESNEFVDNLLKDIETLGIKYE 316 (758)
Q Consensus 249 ~v~~Rfa-P~PtG~lHiGhar~al---~n~~~Ar~~~G~~il---RieDtd~~r~~~~~~~~i~~dl~~LGi~~d 316 (758)
+..+-|| |.-||.||+||+.+.- |.-.|-| .+|+-+| -|-.|.- ......+...+.++.+|-.+|
T Consensus 45 Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~r-L~Gk~vLfPfgFHCTGM--PI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 45 KFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYER-LQGKNVLFPFGFHCTGM--PIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred ceeEeccccccCceeeccceeehhhhHHHHHHHH-hcCceEEeecccccCCC--ccHHhHHHHHHHHHHhCCCCC
Confidence 4444454 8899999999998873 2233333 3343333 3455542 233455777788888998887
No 274
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.68 E-value=14 Score=38.84 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCCCCCccchhhHHHHHHHHHHcc-c--CceEEEEecCC-------CcccchHHHHHHHHHHHHHhCCCCC--CcccccC
Q 043341 256 PEPSGYLHIGHSKAALLNQYFAQR-Y--QGQLIVRFDDT-------NPAKESNEFVDNLLKDIETLGIKYE--TVTYTSD 323 (758)
Q Consensus 256 P~PtG~lHiGhar~al~n~~~Ar~-~--~G~~ilRieDt-------d~~r~~~~~~~~i~~dl~~LGi~~d--~~~~~S~ 323 (758)
--|||-+||||--.|+-+|.--.. | +-.+++-+-|. ||. .-.++.-.....|-..||++. ...+||+
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~-~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~ 98 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPA-ELRQATHDMAASLLACGIDPEKSSLFVQSD 98 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChH-HHHHHHHHHHHHHHHhccCcccceeeeecc
Confidence 469999999999999988764332 2 22455555553 232 222333334444556799998 4667887
Q ss_pred CH
Q 043341 324 YF 325 (758)
Q Consensus 324 ~~ 325 (758)
--
T Consensus 99 Vp 100 (347)
T KOG2713|consen 99 VP 100 (347)
T ss_pred ch
Confidence 53
No 275
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.58 E-value=2.8 Score=49.24 Aligned_cols=51 Identities=10% Similarity=0.028 Sum_probs=31.0
Q ss_pred eeeeecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccH
Q 043341 475 FSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541 (758)
Q Consensus 475 ~~~l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~ 541 (758)
-+||.+++.||||+.++.+ ||..-.+. |+.++.|.-+.-.|-+-.+++|..
T Consensus 701 NGHLmLNsEKMSKSTGNfm---------------TL~qaieK-Fgad~tRlalAdaGD~veDANF~e 751 (1080)
T KOG0437|consen 701 NGHLMLNSEKMSKSTGNFM---------------TLEQAIEK-FGADGTRLALADAGDGVEDANFVE 751 (1080)
T ss_pred CceEEecchhhccccCCee---------------eHHHHHHH-hCccceeeeeecccCCcccchhHH
Confidence 3899999999999996433 55444444 455555544444444444444443
No 276
>PRK10026 arsenate reductase; Provisional
Probab=53.05 E-value=15 Score=34.92 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=27.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
|++| +.+.|+-|++++-.|+.+|++|++...
T Consensus 4 i~iY--~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 4 ITIY--HNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred EEEE--eCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 7899 999999999999999999999998554
No 277
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=50.84 E-value=27 Score=31.69 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=24.6
Q ss_pred CCccEEEeCCCc-------------EEechHHHHHHHHHhC
Q 043341 72 GSAPTFSFSNGS-------------KLQGTYVLLRYIGRVG 99 (758)
Q Consensus 72 g~vP~L~~~~g~-------------~l~ES~aIl~yL~~~~ 99 (758)
...|+|++++|. .|.++-.|++||++.|
T Consensus 67 QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~La~r~ 107 (112)
T PF11287_consen 67 QSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYLAERH 107 (112)
T ss_pred cCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHHHHHc
Confidence 678999997766 6899999999999987
No 278
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.65 E-value=7.3 Score=48.00 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=46.4
Q ss_pred Eeeeee-eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHh
Q 043341 472 IYEFSR-LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK 550 (758)
Q Consensus 472 ~~~~~~-l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~ 550 (758)
...||+ |.-.|.|||||+++. ..-.++.++ +..|.||.|+++.. +..+..|+++-+... ++
T Consensus 589 vltHGfvlDe~GrKMSKSlGN~---------------v~P~~V~~~-yGADiLRLwv~ssd-~~~dl~~s~~il~~~-~~ 650 (933)
T COG0060 589 VLTHGFVLDEKGRKMSKSLGNV---------------VDPQDVIDK-YGADILRLWVASSD-YWEDLRFSDEILKQV-RE 650 (933)
T ss_pred HhhcccEECCCCCCccccCCCc---------------CCHHHHHHh-hCchheeeeeeecC-chhccccCHHHHHHH-HH
Confidence 445654 444588999999742 244566776 89999999999874 888899999985544 44
Q ss_pred hcccc
Q 043341 551 IIDPV 555 (758)
Q Consensus 551 ~l~~~ 555 (758)
.+.++
T Consensus 651 ~~r~i 655 (933)
T COG0060 651 VYRKI 655 (933)
T ss_pred HHHHH
Confidence 44433
No 279
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=44 Score=28.05 Aligned_cols=45 Identities=4% Similarity=-0.081 Sum_probs=36.7
Q ss_pred EEEecccCCCCcHHHHHHHHHhcCCCeeeeec----------------------------CCccEEEeCCCcEEe
Q 043341 40 EIKVLSFPADSPPLLVIAAAKLAGITIPTETS----------------------------GSAPTFSFSNGSKLQ 86 (758)
Q Consensus 40 ~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~----------------------------g~vP~L~~~~g~~l~ 86 (758)
+|+ +...+|-+..+...++-.+++|+.+.+ --+|+|..+||.++.
T Consensus 5 ~lf--gsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLF--GSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eee--ccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 666 777788888888888889999998764 358999999998876
No 280
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=48.70 E-value=22 Score=32.41 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=27.9
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
+++| +.+.|+.|.+++-.|+..|++|+++..
T Consensus 2 i~iY--~~~~C~~c~ka~~~L~~~gi~~~~idi 32 (115)
T cd03032 2 IKLY--TSPSCSSCRKAKQWLEEHQIPFEERNL 32 (115)
T ss_pred EEEE--eCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 6899 999999999999999999999998655
No 281
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=47.88 E-value=9.4 Score=34.07 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=34.3
Q ss_pred EEeeCCCCCCchHHHHHHHHHhCC-CcceEeeeeeeecccccccchh
Q 043341 444 HALRSSEYHDRNAQYYRIQEDLGV-RKVHIYEFSRLNMVYTLLSKRK 489 (758)
Q Consensus 444 hvirg~d~~~~~~~~~~l~~alg~-~~p~~~~~~~l~~~~~klSKR~ 489 (758)
|++||.++..+-..+.|......+ +.|.++.+...++.+..||+|+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l~~~~e~v~~~~~~~~~~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLNLETTVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCCCCCCeEEEccccccCceeeccCC
Confidence 889999999888888873222223 3477777788888888999985
No 282
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.23 E-value=21 Score=39.60 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=41.8
Q ss_pred eecccccccchhhhhhhhcCccCCCCCCCcchHHHHHHcCCCHHHHHHHHHHhccccccccccHHHHHHHHHhh
Q 043341 478 LNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKI 551 (758)
Q Consensus 478 l~~~~~klSKR~~~~li~~g~~~gwddpr~~tl~~l~~~G~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~ 551 (758)
|+.+.+|.||+.+- |+. | .+...-|++++.-|+|++....-.+++.|+|+.+...++..
T Consensus 337 LnyE~gKFSKSrgv-----GvF-G---------~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nse 395 (567)
T KOG1247|consen 337 LNYEDGKFSKSRGV-----GVF-G---------NDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSE 395 (567)
T ss_pred hccccCcccccccc-----ccc-c---------cccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHH
Confidence 56667899999831 111 1 11233468999889999998888899999999877655444
No 283
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=45.26 E-value=25 Score=32.94 Aligned_cols=31 Identities=10% Similarity=-0.028 Sum_probs=27.7
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
++|| +.+.|+.|.+++-.|...|++|+.+.+
T Consensus 2 i~iY--~~~~C~~C~ka~~~L~~~gi~~~~idi 32 (131)
T PRK01655 2 VTLF--TSPSCTSCRKAKAWLEEHDIPFTERNI 32 (131)
T ss_pred EEEE--eCCCChHHHHHHHHHHHcCCCcEEeec
Confidence 6899 999999999999999999999987544
No 284
>PRK10853 putative reductase; Provisional
Probab=44.97 E-value=26 Score=32.27 Aligned_cols=31 Identities=6% Similarity=-0.097 Sum_probs=28.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
+++| +.+.|+.|++++-.|+..|++|+++..
T Consensus 2 i~iy--~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 2 VTLY--GIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred EEEE--cCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 6899 999999999999999999999998665
No 285
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=44.78 E-value=71 Score=26.82 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=32.0
Q ss_pred eeeeccccccccCCCCEEEEeeccceEEeeeeeCCCCCeEEEEEEEec
Q 043341 603 RIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHL 650 (758)
Q Consensus 603 ~i~Ie~~D~~~l~~g~~v~L~~~~n~~~~~~~~~~~g~i~~~~~~~~~ 650 (758)
++++.-+|...|.+|..|++++.-.=.|++++-+.++.-+.+.+++++
T Consensus 4 ~v~~~~~~~~GL~~gs~V~~~Gv~VG~V~~i~l~~~~~~v~v~~~i~~ 51 (81)
T PF02470_consen 4 TVTVYFDDAGGLSVGSPVRYRGVEVGKVTSIELDPDGNRVRVTLRIDP 51 (81)
T ss_pred EEEEEECCcCCCCCcCEEEECCEEEEEEEEEEEcCCCCEEEEEEEEcC
Confidence 567777888999999999999843334677754434444555555543
No 286
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=43.15 E-value=27 Score=34.26 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcccC---CcccCCC-CCHhHHHHHHHHhhh
Q 043341 128 FENACTYVDKYLERR---TFVVGHS-LSIVDIAIWSALAGT 164 (758)
Q Consensus 128 l~~~L~~Le~~L~~~---~flvG~~-lTlADi~l~~~L~~l 164 (758)
-.+++..|++.|+.. .|+.|+. +|-+|+.+|+.|..+
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 356788899999988 9999987 999999999999864
No 287
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=42.83 E-value=33 Score=31.56 Aligned_cols=32 Identities=19% Similarity=0.015 Sum_probs=28.0
Q ss_pred eeEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 38 TMEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 38 ~m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
.++|| +.+.|..|++++-.++..|++|+++..
T Consensus 2 ~itiy--~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 2 MITIY--GNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred eEEEE--eCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 37999 899999999999999999999997544
No 288
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=39.79 E-value=40 Score=31.64 Aligned_cols=33 Identities=6% Similarity=0.026 Sum_probs=28.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeecCC
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETSGS 73 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~g~ 73 (758)
+++| +.+.|+.|++++-.|...|++|++....+
T Consensus 2 i~iY--~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIY--TISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEE--eCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 6899 89999999999999999999999866533
No 289
>PRK12559 transcriptional regulator Spx; Provisional
Probab=39.30 E-value=36 Score=31.91 Aligned_cols=31 Identities=6% Similarity=-0.127 Sum_probs=27.6
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
+++| +.+.|+.|.+++-.|..+|++|+.+..
T Consensus 2 i~iY--~~~~C~~crkA~~~L~~~gi~~~~~di 32 (131)
T PRK12559 2 VVLY--TTASCASCRKAKAWLEENQIDYTEKNI 32 (131)
T ss_pred EEEE--eCCCChHHHHHHHHHHHcCCCeEEEEe
Confidence 6888 899999999999999999999997554
No 290
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=39.25 E-value=1.2e+02 Score=29.19 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHhcCCCeeeeec--------------------CCccEEEeCCCcEEechHHHHHH
Q 043341 48 ADSPPLLVIAAAKLAGITIPTETS--------------------GSAPTFSFSNGSKLQGTYVLLRY 94 (758)
Q Consensus 48 ~s~~~~~v~i~l~~~gl~~~~~~~--------------------g~vP~L~~~~g~~l~ES~aIl~y 94 (758)
..+++.+++-+|+.++++|+...+ ..+|.+.+ +|..|-+...+.+.
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI-~G~~IGG~del~~L 80 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV-DGRYLGGAEEVLRL 80 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE-CCEEEecHHHHHHH
Confidence 578899999999999999987554 37899988 88888777766664
No 291
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=39.16 E-value=1e+02 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=29.7
Q ss_pred ccCCCCcHHHH----HHHHHhcCCCeeeeec-----------CCccEEEeCCCcEEe
Q 043341 45 SFPADSPPLLV----IAAAKLAGITIPTETS-----------GSAPTFSFSNGSKLQ 86 (758)
Q Consensus 45 ~~~~s~~~~~v----~i~l~~~gl~~~~~~~-----------g~vP~L~~~~g~~l~ 86 (758)
+.+.+++|..+ .-+++..|.++++..+ ..+|++.+ ||..++
T Consensus 6 ~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i-~G~~~~ 61 (76)
T TIGR00412 6 YGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV-DGELVI 61 (76)
T ss_pred ECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE-CCEEEE
Confidence 35788888775 5577777877776543 78999999 776554
No 292
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=38.67 E-value=40 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.0
Q ss_pred hHHHHHHcCCCHHHHHHHHHHh
Q 043341 509 TVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 509 tl~~l~~~G~~~eal~~~~~~~ 530 (758)
-+..-++.|+|.+++|.|+...
T Consensus 8 Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 8 LIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhC
Confidence 3566788999999999998753
No 293
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.50 E-value=66 Score=38.13 Aligned_cols=88 Identities=20% Similarity=0.366 Sum_probs=57.7
Q ss_pred CCCCCCCccchhhHHHHHHHHHHc--ccCceEEEE-ec----------CCCcc----------------------cchHH
Q 043341 255 APEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVR-FD----------DTNPA----------------------KESNE 299 (758)
Q Consensus 255 aP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilR-ie----------Dtd~~----------------------r~~~~ 299 (758)
||-.||-.|-||.-+..+.+..-| ...|..+-| |- .+|.+ ..+-.
T Consensus 46 PPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmr 125 (1070)
T KOG0434|consen 46 PPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMR 125 (1070)
T ss_pred CccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHH
Confidence 488999999999999998887666 244555533 31 11111 11224
Q ss_pred HHHHHHHHHHHhCC--CCCCcccc--cCCHHHHHHHHHHHHHhCcee
Q 043341 300 FVDNLLKDIETLGI--KYETVTYT--SDYFPDLMEMAENLIRQGKAY 342 (758)
Q Consensus 300 ~~~~i~~dl~~LGi--~~d~~~~~--S~~~~~~~~~~~~Li~~G~aY 342 (758)
|.......+..||- ++|.-|.+ ...++..--+.++|-++|++|
T Consensus 126 YssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVY 172 (1070)
T KOG0434|consen 126 YSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVY 172 (1070)
T ss_pred HHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCcee
Confidence 55666777777874 34444433 335677778899999999999
No 294
>PRK10824 glutaredoxin-4; Provisional
Probab=37.43 E-value=91 Score=28.58 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHHHH
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLRYI 95 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~yL 95 (758)
+.||+|.++.-+|...|++|....+ .+||.+-+ +|..|-++..+....
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI-~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV-DGELVGGCDIVIEMY 91 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE-CCEEEcChHHHHHHH
Confidence 4789999999999999999876443 68999988 888887766666543
No 295
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=37.21 E-value=35 Score=30.87 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=27.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
++|| +.+.|+.|.+++-.|..+|++|+...+
T Consensus 1 i~iY--~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (111)
T cd03036 1 LKFY--EYPKCSTCRKAKKWLDEHGVDYTAIDI 31 (111)
T ss_pred CEEE--ECCCCHHHHHHHHHHHHcCCceEEecc
Confidence 4788 889999999999999999999998655
No 296
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.92 E-value=47 Score=40.41 Aligned_cols=97 Identities=11% Similarity=-0.065 Sum_probs=55.3
Q ss_pred CCCCC-CchHHHHHHHHHhCCCcc--eEeeeeeee-cccccccchhhhhh-------------hhcCccCCCCCCCcchH
Q 043341 448 SSEYH-DRNAQYYRIQEDLGVRKV--HIYEFSRLN-MVYTLLSKRKLLWF-------------VQNGKVDGWDDPRFPTV 510 (758)
Q Consensus 448 g~d~~-~~~~~~~~l~~alg~~~p--~~~~~~~l~-~~~~klSKR~~~~l-------------i~~g~~~gwddpr~~tl 510 (758)
|-|.+ .-.+|+.++-..|.-+.| +++.|+++. -.|.||||+.++-+ ..+++..|-=||+-...
T Consensus 553 G~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~ 632 (995)
T KOG0432|consen 553 GHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEK 632 (995)
T ss_pred CchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHH
Confidence 44543 445566655555544556 333444433 23789999984322 11223334445543221
Q ss_pred H--HHHHcCC-------CHHHHHHHHHHhccccccccccHHHHH
Q 043341 511 Q--GIVRRGL-------LVEALIQFILEQGASKNLNLMEWDKLW 545 (758)
Q Consensus 511 ~--~l~~~G~-------~~eal~~~~~~~g~~~~~~~~d~~~l~ 545 (758)
. ++++. | ..||+|+-+.+-++...+.++|+..+.
T Consensus 633 a~~gq~kd-FPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~ 675 (995)
T KOG0432|consen 633 AKKGQKKD-FPNGIPECGTDALRFALCSYTTQGRDINLDVLRVE 675 (995)
T ss_pred HHHHHHhh-cCCCCcccchHHHHHHHHHccccCccccccHHHHh
Confidence 1 22222 4 789999999998888888999886543
No 297
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=36.53 E-value=85 Score=24.86 Aligned_cols=45 Identities=20% Similarity=0.109 Sum_probs=29.4
Q ss_pred eEEEecccCCCCcHHHHHHHHHhc-----CCCeeeeec------------CCccEEEeCCCcEEe
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLA-----GITIPTETS------------GSAPTFSFSNGSKLQ 86 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~-----gl~~~~~~~------------g~vP~L~~~~g~~l~ 86 (758)
+.+| +.+.+++|..+.-.+... ++++....+ ..+|++.+ +|..++
T Consensus 3 v~~f--~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i-~~~~~~ 64 (67)
T cd02973 3 IEVF--VSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI-NGKVEF 64 (67)
T ss_pred EEEE--ECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE-CCEEEE
Confidence 3565 778888888876666554 455544322 47999998 666554
No 298
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=36.43 E-value=77 Score=35.84 Aligned_cols=52 Identities=12% Similarity=-0.003 Sum_probs=43.2
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec------------------------CCccEEEeCCCcEEechHHHHH
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS------------------------GSAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~------------------------g~vP~L~~~~g~~l~ES~aIl~ 93 (758)
.++| +-+.||+|.++.-+|...|++|+...+ ..||++.+ ||..|.+-..+..
T Consensus 4 V~vy--s~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi-~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIY--TKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV-GDVHIGGYDNLMA 79 (410)
T ss_pred EEEE--eCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE-CCEEEeCchHHHH
Confidence 5788 888999999999999999999987543 26899998 7888887777765
No 299
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=34.89 E-value=41 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=27.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
+++| +.+.|+.|.+++-.|..+|++|+...+
T Consensus 1 i~iY--~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (105)
T cd02977 1 ITIY--GNPNCSTSRKALAWLEEHGIEYEFIDY 31 (105)
T ss_pred CEEE--ECCCCHHHHHHHHHHHHcCCCcEEEee
Confidence 3678 888999999999999999999997655
No 300
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=34.26 E-value=1.2e+02 Score=25.20 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=27.6
Q ss_pred cCCCCcHHHH----HHHHHhcCCCeeeeec-----------CCccEEEeCCCcEEec
Q 043341 46 FPADSPPLLV----IAAAKLAGITIPTETS-----------GSAPTFSFSNGSKLQG 87 (758)
Q Consensus 46 ~~~s~~~~~v----~i~l~~~gl~~~~~~~-----------g~vP~L~~~~g~~l~E 87 (758)
.+.+++|..+ .-++...|+.++.... ..+|++.+ ||...+.
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~ygv~~vPalvI-ng~~~~~ 62 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEIEKYGVMSVPALVI-NGKVVFV 62 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHHHHTT-SSSSEEEE-TTEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHHHHcCCCCCCEEEE-CCEEEEE
Confidence 5557877753 3455556777776554 89999999 6665543
No 301
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=33.88 E-value=47 Score=30.25 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=27.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
++|| +.+.|+.|++++-.|+.+|++|+++..
T Consensus 2 i~iy--~~p~C~~crkA~~~L~~~gi~~~~~d~ 32 (113)
T cd03033 2 IIFY--EKPGCANNARQKALLEAAGHEVEVRDL 32 (113)
T ss_pred EEEE--ECCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 5788 899999999999999999999998665
No 302
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.45 E-value=50 Score=29.55 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=20.7
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
++..|+.+++-|++.++|+.++...
T Consensus 44 ~l~~I~~lr~~G~sL~eI~~~l~~~ 68 (107)
T cd04777 44 DLEFILELKGLGFSLIEIQKIFSYK 68 (107)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 3457788999999999999998653
No 303
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=33.22 E-value=52 Score=29.52 Aligned_cols=31 Identities=3% Similarity=-0.074 Sum_probs=27.5
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
+++| +.+.|+.|++++-.|...|++|+++..
T Consensus 1 i~iy--~~~~C~~crka~~~L~~~~i~~~~~di 31 (105)
T cd03035 1 ITLY--GIKNCDTVKKARKWLEARGVAYTFHDY 31 (105)
T ss_pred CEEE--eCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 4678 889999999999999999999998665
No 304
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=31.42 E-value=55 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=28.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
|+|| +.+.++-+++++-.|...|++|+++..
T Consensus 3 i~iY--~~p~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFY--EKPGCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred EEEE--eCCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 6888 999999999999999999999998665
No 305
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.08 E-value=54 Score=29.87 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=32.9
Q ss_pred cccchhhhhhhhcCccCCC-CCC-----------CcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 484 LLSKRKLLWFVQNGKVDGW-DDP-----------RFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 484 klSKR~~~~li~~g~~~gw-ddp-----------r~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
-+|++.++.+-+.|+++.. .++ ++..|..|++.|++.++|+.++...
T Consensus 11 gvs~~tLryYe~~GLi~p~~~~~~yR~Y~~~d~~~l~~I~~lr~~G~sl~eI~~~l~~~ 69 (116)
T cd04769 11 GVTIKAIRLYEEKGLLPSPKRSGNYRVYDAQHVECLRFIKEARQLGFTLAELKAIFAGH 69 (116)
T ss_pred CcCHHHHHHHHHCCCCCCCCCCCCceeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 4677777777777777522 111 2334667889999999999998765
No 306
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=30.17 E-value=32 Score=36.58 Aligned_cols=80 Identities=16% Similarity=0.360 Sum_probs=47.5
Q ss_pred cCCCCCCCccchhhHHHH---------------HHHHHHcccCceEEEEecCCCcccchH----HHHHHHHHH-------
Q 043341 254 FAPEPSGYLHIGHSKAAL---------------LNQYFAQRYQGQLIVRFDDTNPAKESN----EFVDNLLKD------- 307 (758)
Q Consensus 254 faP~PtG~lHiGhar~al---------------~n~~~Ar~~~G~~ilRieDtd~~r~~~----~~~~~i~~d------- 307 (758)
+|---....|.||||+.. -|+-+-.+++|..|+.= -+|... .|++.++.+
T Consensus 67 YADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e----~ERyE~lrHCryVDEVi~~APW~lt~ 142 (348)
T KOG2804|consen 67 YADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNE----NERYEALRHCRYVDEVIPNAPWTLTP 142 (348)
T ss_pred EccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecCh----HHHHHHhhhhhhhhhhccCCCccccH
Confidence 777778889999999873 24556667777777641 111111 344444332
Q ss_pred --HHHhCCC---CCCcccccCCHHHHHHHHHHHHHhCc
Q 043341 308 --IETLGIK---YETVTYTSDYFPDLMEMAENLIRQGK 340 (758)
Q Consensus 308 --l~~LGi~---~d~~~~~S~~~~~~~~~~~~Li~~G~ 340 (758)
|+-.-|+ .|.++|.|.-.+.+|+.++ +.|.
T Consensus 143 EFL~~HKIDfVAHDdIPY~s~gsdDiY~~vK---~~G~ 177 (348)
T KOG2804|consen 143 EFLEKHKIDFVAHDDIPYVSAGSDDIYKPVK---EAGM 177 (348)
T ss_pred HHHHhcccceeeccCccccCCCchhHHHHHH---Hhcc
Confidence 3334455 3567777776666666554 4565
No 307
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=28.94 E-value=66 Score=29.83 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=30.8
Q ss_pred cccchhhhhhhhcCccC-------CC------CCCCcchHHHHHHcCCCHHHHHHHHHH
Q 043341 484 LLSKRKLLWFVQNGKVD-------GW------DDPRFPTVQGIVRRGLLVEALIQFILE 529 (758)
Q Consensus 484 klSKR~~~~li~~g~~~-------gw------ddpr~~tl~~l~~~G~~~eal~~~~~~ 529 (758)
-+|.+.++.+-+.|+++ |+ |=.++..|+.+++.||+.++|+.++..
T Consensus 11 gvs~~tlRyYe~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~ 69 (127)
T TIGR02044 11 GLSSKMIRYYEEKGLIPPPLRSEGGYRTYTQQHLDELRLISRARQVGFSLEECKELLNL 69 (127)
T ss_pred CcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 34555566666666653 22 113455677889999999999998864
No 308
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=28.72 E-value=61 Score=29.48 Aligned_cols=31 Identities=10% Similarity=-0.045 Sum_probs=26.8
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
++|| +.+.|+.|.+++-.+...|++|+.+..
T Consensus 1 i~iY--~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (117)
T TIGR01617 1 IKVY--GSPNCTTCKKARRWLEANGIEYQFIDI 31 (117)
T ss_pred CEEE--eCCCCHHHHHHHHHHHHcCCceEEEec
Confidence 3678 889999999999999999999887554
No 309
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=28.20 E-value=69 Score=29.78 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=31.1
Q ss_pred cccchhhhhhhhcCccC-------CC---C---CCCcchHHHHHHcCCCHHHHHHHHHH
Q 043341 484 LLSKRKLLWFVQNGKVD-------GW---D---DPRFPTVQGIVRRGLLVEALIQFILE 529 (758)
Q Consensus 484 klSKR~~~~li~~g~~~-------gw---d---dpr~~tl~~l~~~G~~~eal~~~~~~ 529 (758)
.+|++.++.+-+.|+++ |+ + =.++-.|+.+++.|++.++|+.++..
T Consensus 11 gvs~~tlR~Ye~~GLl~~~~r~~~gyR~Y~~~~l~~l~~I~~lr~lG~sL~eI~~~l~~ 69 (127)
T TIGR02047 11 GVSVETIRFYEKQGLLPPPARTDNNYRVYTVGHVERLAFIRNCRTLDMSLAEIRQLLRY 69 (127)
T ss_pred CcCHHHHHHHHHCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35566666666666663 22 1 12355677788999999999998864
No 310
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=28.11 E-value=1.2e+02 Score=25.38 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=38.6
Q ss_pred chHHHHHHHHHhCC-----CCCCCHHHHHHHHHHHHhccccCChHHHHHHHHHHHHhcccCCcccCCCCCHhHHH
Q 043341 87 GTYVLLRYIGRVGN-----FYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIA 156 (758)
Q Consensus 87 ES~aIl~yL~~~~~-----L~p~~~~era~v~~wl~~~~~~l~~~~l~~~L~~Le~~L~~~~flvG~~lTlADi~ 156 (758)
|..-|+.++...|+ +.+.+ .+..++-|....... .++.+...|.+++...+| -||+||+.
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d~----~ye~v~~al~~~i~~~kf----PPsiaeii 69 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKDY----DYEIVMKALKKHIATNKF----PPSIAEII 69 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SS-------GGGG-
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhCCC----CcCHHHHh
Confidence 56778888888872 22232 357899999977653 677778888888887765 68999874
No 311
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.51 E-value=50 Score=34.94 Aligned_cols=59 Identities=17% Similarity=0.422 Sum_probs=40.7
Q ss_pred CCCccchhhHHHHHHHHHHcccCceEEEEecCCCcc-------cchHHHHHHHHHHHHHhCCCCCC
Q 043341 259 SGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPA-------KESNEFVDNLLKDIETLGIKYET 317 (758)
Q Consensus 259 tG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~-------r~~~~~~~~i~~dl~~LGi~~d~ 317 (758)
++.|||||.-.+++.-++-.-++.-+|+.++|-..- .....|..+=.+|+-.+|+++..
T Consensus 96 S~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 96 SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred ccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 678999999999999888888999999888764321 11123333334455567777764
No 312
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.79 E-value=74 Score=29.44 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=31.4
Q ss_pred cccchhhhhhhhcCccC-------CC---CC---CCcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 484 LLSKRKLLWFVQNGKVD-------GW---DD---PRFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 484 klSKR~~~~li~~g~~~-------gw---dd---pr~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
.+|++.++.+-+.|+++ |+ ++ .++..|+.+++.|++.++|+.++...
T Consensus 11 gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~ 70 (127)
T cd04784 11 GCSVETIRYYEKEGLLPAPARSANNYRLYDEEHLERLLFIRRCRSLDMSLDEIRTLLQLQ 70 (127)
T ss_pred CcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 35666666666666663 22 11 22346677889999999999998653
No 313
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.80 E-value=81 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=27.1
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
++|| +.+.|+.|++++-.|+..|++|++...
T Consensus 1 i~iy--~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIY--HNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEE--ECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 4788 888999999999999999999998655
No 314
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.78 E-value=88 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=20.6
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
++..|+.|++.|++.++|+.++...
T Consensus 45 ~l~~I~~lr~~G~sl~eI~~~l~~~ 69 (112)
T cd01282 45 RVRQIRRLLAAGLTLEEIREFLPCL 69 (112)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3457788999999999999988754
No 315
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=24.61 E-value=2.1e+02 Score=24.20 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=48.3
Q ss_pred CCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcccchHHHHHHHHHHHHHhCCCCC---CcccccCCHHHHHHHH
Q 043341 256 PEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYE---TVTYTSDYFPDLMEMA 332 (758)
Q Consensus 256 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dl~~LGi~~d---~~~~~S~~~~~~~~~~ 332 (758)
.+|.| | |+|.|..=--.|++|++...++..+. ... .++++.-| .||+... .+....+--+...+.+
T Consensus 9 ~~~~G-l---HaRpa~~lv~~a~~~~~~i~i~~~~~---~vd---akSil~l~-~L~~~~G~~i~i~~~G~de~~a~~~i 77 (84)
T PF00381_consen 9 KNPNG-L---HARPAAELVQIASKFDSDITIRKGGK---TVD---AKSILGLM-SLGAKKGDEIEIEAEGEDEEEALEAI 77 (84)
T ss_dssp ESTTS-S---SHHHHHHHHHHHHTSSSEEEEEETTE---EEE---TTSHHHHH-HHTBSTTEEEEEEEESTTHHHHHHHH
T ss_pred cCCCc-c---cHHHHHHHHHHHhhCCCEEEEEeCce---eEe---cCCHHHHh-hhhcCCCCEEEEEEECcCHHHHHHHH
Confidence 35677 4 59999877788999999999997752 111 13444433 5888775 3444566666677777
Q ss_pred HHHHHhC
Q 043341 333 ENLIRQG 339 (758)
Q Consensus 333 ~~Li~~G 339 (758)
.+++++|
T Consensus 78 ~~~~~~~ 84 (84)
T PF00381_consen 78 AEFLESG 84 (84)
T ss_dssp HHHHHH-
T ss_pred HHHHhcC
Confidence 7777765
No 316
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=23.26 E-value=1.5e+02 Score=29.90 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=25.0
Q ss_pred CeeeeccCCCCCCCccchhhHHHHHHHHHHcccCceEEEEecCCCcc
Q 043341 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPA 294 (758)
Q Consensus 248 ~~v~~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilRieDtd~~ 294 (758)
+-+++||-| +|+||.... .+.+.+.- ..|+=|.-.+..
T Consensus 7 ~v~iGRFQP-----fH~GHl~~I--~~al~~~d--evII~IGSA~~s 44 (196)
T PRK13793 7 LVFIGRFQP-----FHLAHMQTI--EIALQQSR--YVILALGSAQME 44 (196)
T ss_pred EEEEecCCC-----CcHHHHHHH--HHHHHhCC--EEEEEEccCCCC
Confidence 458999998 899999654 34444422 666666654443
No 317
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=22.64 E-value=1e+02 Score=28.04 Aligned_cols=31 Identities=19% Similarity=0.045 Sum_probs=27.0
Q ss_pred eEEEecccCCCCcHHHHHHHHHhcCCCeeeeec
Q 043341 39 MEIKVLSFPADSPPLLVIAAAKLAGITIPTETS 71 (758)
Q Consensus 39 m~L~~l~~~~s~~~~~v~i~l~~~gl~~~~~~~ 71 (758)
++|| +.+.|+.|++++-.|+..|++|++...
T Consensus 1 i~iy--~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (114)
T TIGR00014 1 VTIY--HNPRCSKSRNTLALLEDKGIEPEVVKY 31 (114)
T ss_pred CEEE--ECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 3688 888999999999999999999998655
No 318
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=22.54 E-value=1e+02 Score=29.17 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.3
Q ss_pred cchHHHHHHcCCCHHHHHHHHHH
Q 043341 507 FPTVQGIVRRGLLVEALIQFILE 529 (758)
Q Consensus 507 ~~tl~~l~~~G~~~eal~~~~~~ 529 (758)
+..|+.+++.|++.++|+.++..
T Consensus 47 l~~I~~lr~~G~sl~eI~~~l~~ 69 (139)
T cd01110 47 IAFIKVAQRLGLSLAEIAEALAT 69 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 45677889999999999998864
No 319
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=22.52 E-value=99 Score=28.65 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.0
Q ss_pred CcchHHHHHHcCCCHHHHHHHHHH
Q 043341 506 RFPTVQGIVRRGLLVEALIQFILE 529 (758)
Q Consensus 506 r~~tl~~l~~~G~~~eal~~~~~~ 529 (758)
++..|+.|++.|++.++|+.++..
T Consensus 46 ~l~~I~~lr~~G~sL~eI~~~l~~ 69 (127)
T cd01108 46 ELRFIRRARDLGFSLEEIRELLAL 69 (127)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455677889999999999998864
No 320
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=22.41 E-value=1e+02 Score=28.81 Aligned_cols=47 Identities=11% Similarity=0.239 Sum_probs=31.7
Q ss_pred cccchhhhhhhhcCccCCCCCC-------------CcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 484 LLSKRKLLWFVQNGKVDGWDDP-------------RFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 484 klSKR~~~~li~~g~~~gwddp-------------r~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
.+|.+.++.+-+.|+++.-.++ ++..|+.+++.||+.++|+.++...
T Consensus 11 gvs~~TLRyYE~~GLl~p~r~~~~gyR~Y~~~~~~~l~~I~~lr~~G~sL~eI~~~l~~~ 70 (133)
T cd04787 11 GVTPDTVRFYTRIGLLRPTRDPVNGYRLYSEKDLSRLRFILSARQLGFSLKDIKEILSHA 70 (133)
T ss_pred CcCHHHHHHHHHCCCCCCCcCCCCCeeeCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhhh
Confidence 4566666666666666422111 3456778899999999999988653
No 321
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.32 E-value=1e+02 Score=28.23 Aligned_cols=47 Identities=11% Similarity=0.276 Sum_probs=30.7
Q ss_pred cccchhhhhhhhcCccC-------CC---CC---CCcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 484 LLSKRKLLWFVQNGKVD-------GW---DD---PRFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 484 klSKR~~~~li~~g~~~-------gw---dd---pr~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
.+|.+.++.+-+.|+++ |+ ++ .++..|..|++.|++.++|+.++...
T Consensus 11 gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~~i~~l~~I~~lr~~G~sl~eI~~~l~~~ 70 (123)
T cd04770 11 GVSPDTIRYYERIGLLPPPQRSENGYRLYGEADLARLRFIRRAQALGFSLAEIRELLSLR 70 (123)
T ss_pred CcCHHHHHHHHHCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 34555566666666653 21 11 23446778899999999999998754
No 322
>PF10574 UPF0552: Uncharacterised protein family UPF0552; InterPro: IPR018889 This family of proteins has no known function.
Probab=21.43 E-value=1e+02 Score=31.35 Aligned_cols=41 Identities=20% Similarity=0.541 Sum_probs=28.9
Q ss_pred eeeecccccc--ccCCCCEEEEeeccce-EEeeeeeCCCCCeEE
Q 043341 603 RIWIDHADAQ--LISANEEITLMDWGNA-IVKEISRDQDGNVTQ 643 (758)
Q Consensus 603 ~i~Ie~~D~~--~l~~g~~v~L~~~~n~-~~~~~~~~~~g~i~~ 643 (758)
.+|++.+.+. +|.+|++|||+--|+= .|.++.|=..|+|+.
T Consensus 139 aFW~~e~~~~~~ele~G~~vRlKT~GDspFieSlaKlD~~tvt~ 182 (224)
T PF10574_consen 139 AFWMPEAEMEKMELELGDEVRLKTRGDSPFIESLAKLDSGTVTK 182 (224)
T ss_pred EEeechhhccceecccCCeEEEEecCCchhheeeeeeccCceEe
Confidence 3566666554 5889999999999943 466666655677773
No 323
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=21.37 E-value=78 Score=29.01 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=29.6
Q ss_pred ccchhhhhhhhcCccC------CC---C---CCCcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 485 LSKRKLLWFVQNGKVD------GW---D---DPRFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 485 lSKR~~~~li~~g~~~------gw---d---dpr~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
+|++.++++-+.|+++ |+ + =.++..++.+++.|++.++|+.++...
T Consensus 12 vs~~tlRyYe~~GLl~p~~~~~gyR~Y~~~~l~~l~~I~~lr~~G~~L~eI~~~l~~~ 69 (120)
T cd04781 12 LPASTLRYYEEKGLIASIGRRGLRRQYDPQVLDRLALIALGRAAGFSLDEIQAMLSHD 69 (120)
T ss_pred cCHHHHHHHHHCCCCCCCcCCCCceecCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 4555555555555553 21 1 123446778889999999999988654
No 324
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=21.25 E-value=1.6e+02 Score=23.63 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=15.7
Q ss_pred chHHHHHHcCCCHHHHHHHHH
Q 043341 508 PTVQGIVRRGLLVEALIQFIL 528 (758)
Q Consensus 508 ~tl~~l~~~G~~~eal~~~~~ 528 (758)
..+..|++.|+++++++..+.
T Consensus 48 ~~i~~lr~~g~~~~~i~~~l~ 68 (70)
T smart00422 48 RFIKRLKELGFSLEEIKELLE 68 (70)
T ss_pred HHHHHHHHcCCCHHHHHHHHh
Confidence 356677788888888887664
No 325
>cd04780 HTH_MerR-like_sg5 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 5), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.14 E-value=1.3e+02 Score=26.45 Aligned_cols=46 Identities=11% Similarity=0.262 Sum_probs=29.5
Q ss_pred cccchhhhhhhhcCccCC-C---------C---CCCcchHHHHHH-cCCCHHHHHHHHHH
Q 043341 484 LLSKRKLLWFVQNGKVDG-W---------D---DPRFPTVQGIVR-RGLLVEALIQFILE 529 (758)
Q Consensus 484 klSKR~~~~li~~g~~~g-w---------d---dpr~~tl~~l~~-~G~~~eal~~~~~~ 529 (758)
-+|++.++.+.+.|+++. + + =.++..++.|++ .|++.++|+.++..
T Consensus 11 gvs~~tlR~Ye~~GLl~p~~r~~~g~r~Y~~~dv~~l~~I~~L~~~~G~~l~~I~~~l~~ 70 (95)
T cd04780 11 GVSVATIKYYLREGLLPEGRRLAPNQAEYSEAHVERLRLIRALQQEGGLPISQIKEVLDA 70 (95)
T ss_pred CcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356666777777777641 1 1 123445666776 69999999988765
No 326
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=20.93 E-value=79 Score=36.39 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhccccccccccHHHHHHHHHhhccccCCcc
Q 043341 518 LLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRH 559 (758)
Q Consensus 518 ~~~eal~~~~~~~g~~~~~~~~d~~~l~~~n~~~l~~~~~r~ 559 (758)
++.+++..++....++++...||.++|.++|++||.......
T Consensus 292 f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry~~~~p~e~ 333 (472)
T COG0008 292 FSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRYMRVDPVEV 333 (472)
T ss_pred HHHHHHHhhhhhhhhhcccccccHHHhHhhhHHHHHhCCHHH
Confidence 577778777777779999999999999999999999844443
No 327
>PTZ00062 glutaredoxin; Provisional
Probab=20.73 E-value=2.4e+02 Score=28.60 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHHHhcCCCeeeeec----------------CCccEEEeCCCcEEechHHHHH
Q 043341 47 PADSPPLLVIAAAKLAGITIPTETS----------------GSAPTFSFSNGSKLQGTYVLLR 93 (758)
Q Consensus 47 ~~s~~~~~v~i~l~~~gl~~~~~~~----------------g~vP~L~~~~g~~l~ES~aIl~ 93 (758)
+.+++|.++.-+|...|++|+...+ ..+|.+-+ +|..|-+...+..
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI-~G~~IGG~d~l~~ 187 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYV-NGELIGGHDIIKE 187 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE-CCEEEcChHHHHH
Confidence 4688888999999999999887443 58999999 8887766655554
No 328
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.48 E-value=72 Score=29.91 Aligned_cols=47 Identities=9% Similarity=0.271 Sum_probs=32.3
Q ss_pred cccchhhhhhhhcCccC-------CC------CCCCcchHHHHHHcCCCHHHHHHHHHHh
Q 043341 484 LLSKRKLLWFVQNGKVD-------GW------DDPRFPTVQGIVRRGLLVEALIQFILEQ 530 (758)
Q Consensus 484 klSKR~~~~li~~g~~~-------gw------ddpr~~tl~~l~~~G~~~eal~~~~~~~ 530 (758)
.+|.+.++.+-+.|+++ |+ |-.++..|+.+++.||+.++|+.++...
T Consensus 11 gvs~~tLRyYE~~GLl~p~~r~~~gyR~Y~~~~v~~l~~I~~lr~~GfsL~eI~~ll~~~ 70 (131)
T cd04786 11 GMAASRIRFYEAEGLLSSVERSANGYRDYPPETVWVLEIISSAQQAGFSLDEIRQLLPAD 70 (131)
T ss_pred CcCHHHHHHHHHCCCCCCCCcCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 35566666666666663 33 1234566778899999999999988643
No 329
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=20.06 E-value=1.9e+02 Score=27.92 Aligned_cols=23 Identities=9% Similarity=0.028 Sum_probs=19.5
Q ss_pred cchHHHHHHcCCCHHHHHHHHHH
Q 043341 507 FPTVQGIVRRGLLVEALIQFILE 529 (758)
Q Consensus 507 ~~tl~~l~~~G~~~eal~~~~~~ 529 (758)
+-.|+.+++.||+.++|+.++..
T Consensus 57 L~~I~~lr~lG~sL~eIk~ll~~ 79 (154)
T PRK15002 57 VAIIKIAQRIGIPLATIGEAFGV 79 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34577889999999999999975
Done!