RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 043341
(758 letters)
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 1447 bits (3749), Expect = 0.0
Identities = 572/723 (79%), Positives = 638/723 (88%), Gaps = 10/723 (1%)
Query: 39 MEIKVLSFPADSPPLLVIAAAKLAGITI---PTETSGSAPTFSFSNGSKLQGTYVLLRYI 95
ME K LSFP DSPPL VIAAAK+AG+ + P+ SGSAPT FS+G KL GT VLLRYI
Sbjct: 1 MEAK-LSFPPDSPPLAVIAAAKVAGVPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYI 59
Query: 96 GR---VGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSI 152
R + FYGQ+A+E+ ++DEWLDY P FSSGSEFENAC YVD YL RTF+VG+SL+I
Sbjct: 60 ARSASLPGFYGQDAFESSQVDEWLDYAPTFSSGSEFENACEYVDGYLASRTFLVGYSLTI 119
Query: 153 VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPT 212
DIAIWS LAG+GQRW+SLRKSKKYQNLVRWFNS+SAEYSD L+EVTA YV RG GKP
Sbjct: 120 ADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILNEVTAAYVGKRGAGKPA 179
Query: 213 AAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALL 272
AAKSKE+ G A + SFEVDLP AE GKV RF PEPSGYLHIGH+KAALL
Sbjct: 180 AAKSKEKVADAGKADG---AKDKGSFEVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALL 236
Query: 273 NQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMA 332
NQYFA+RY+G+LIVRFDDTNP+KES+EFV+N+LKDIETLGIKY+ VTYTSDYFP LMEMA
Sbjct: 237 NQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMA 296
Query: 333 ENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRG 392
E LI++GKAYVDDTPREQM+KERMDGIESKCRNNS+EEN++LWKEMIAGSERGL+CC+RG
Sbjct: 297 EKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRG 356
Query: 393 KLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYH 452
KLDMQDPNKSLRDPVYYRCNP PHHRIGSKYKVYPTYDFACPFVDA EG+THALRSSEYH
Sbjct: 357 KLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYH 416
Query: 453 DRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQG 512
DRNAQYYRI ED+G+RKVHI+EFSRLN VYTLLSKRKL WFV NGKV+GWDDPRFPTVQG
Sbjct: 417 DRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQG 476
Query: 513 IVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTL 572
IVRRGL +EAL QFIL QGASKNLNLMEWDKLWTINKKIIDPVCPRHTAV+++ RVLLTL
Sbjct: 477 IVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLTL 536
Query: 573 TDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKE 632
TDGP+ PFVRIIPRHKKYEGAG+KATT+T RIW+D+ADA+ IS EE+TLMDWGNAI+KE
Sbjct: 537 TDGPETPFVRIIPRHKKYEGAGKKATTFTNRIWLDYADAEAISEGEEVTLMDWGNAIIKE 596
Query: 633 ISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGED 692
I++D+ G VT LSG LHLEGSVK TKLKLTWLP+TNELV L+LV FDYLITKKKLEE ++
Sbjct: 597 ITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKKKLEEDDN 656
Query: 693 FLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPVVLFAIPDGR 752
FLDVLNPCT+ ETAA+GDSNMRNLKRGEI+QLERKGY+RCD PF RSSKP+VLFAIPDGR
Sbjct: 657 FLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPDGR 716
Query: 753 QQA 755
QQ
Sbjct: 717 QQK 719
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 564 bits (1454), Expect = 0.0
Identities = 255/515 (49%), Positives = 339/515 (65%), Gaps = 7/515 (1%)
Query: 242 LPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFV 301
L +AE GKV RF PE SG+LHIGH+KAAL+N A +Y+G+L+ RFDDTNP+KE F
Sbjct: 45 LTNAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFE 104
Query: 302 DNLLKDIETLGIKYET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIE 360
+L D+ TLG+ ++ TY+SDY + E AE LI++G AY D TPRE+MQK R DG+
Sbjct: 105 QAILDDLATLGVSWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVP 164
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIG 420
+K R+ S+EE +LW EM GS G E CLR K+ + + NK++RDPV YR N PH R G
Sbjct: 165 TKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQG 224
Query: 421 SKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNM 480
+KYK YPTYDF CP +D+ EG+THALR++EYHDRN QYY + LG+RK + +FSRLNM
Sbjct: 225 TKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNM 284
Query: 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLME 540
Y+++SKRKL V VDGWDDPRFPTV+ +VRRGL +EAL QF+ EQG SK +N ME
Sbjct: 285 EYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFME 344
Query: 541 WDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTY 600
W KLW N +I+DP PR+T V +V T+ +G HKK GEK
Sbjct: 345 WSKLWYFNTQILDPSVPRYTVVSNTLKVRCTV-EGQIHLEACEKLLHKKVPDMGEKTYYK 403
Query: 601 TKRIWIDHADAQLISANEEITLMDWGNAIVKEISR-DQDGNVTQLSGFLHLEGSVKNTKL 659
+ I++D D L+ +E+TLMDWGNA +K I R +D +T LHLEG VK TK
Sbjct: 404 SDVIFLDAEDVALLKEGDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDVKKTKF 463
Query: 660 KLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRG 719
KLTW+PE+ + + L +D+L+TKKK + E D++ P T++ G+ + LK+G
Sbjct: 464 KLTWVPESPKAEVMELNEYDHLLTKKKPDPEESIDDIIAPVTKYTQEVYGEEALSVLKKG 523
Query: 720 EILQLERKGYFRCDVPFTRSSKPVVLFAIPDGRQQ 754
+I+QLER+GY+ D + VL AIPDGR++
Sbjct: 524 DIIQLERRGYYIVDDVTPKK----VLIAIPDGREK 554
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 529 bits (1364), Expect = 0.0
Identities = 241/511 (47%), Positives = 343/511 (67%), Gaps = 9/511 (1%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
G++ RF PEPSGYLHIGH+KAALLN Y+A+RY+G+LI+RFDDTNP+KE EF +++++D
Sbjct: 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIED 69
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
+ + IK ++V++TSDYF + A LI +G AY+DDTP+E+M+KER D ESK RN S
Sbjct: 70 LGKIEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQS 129
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
EE ++++KEM +G E G CLR K+DMQ N +LRDPV +R N PHHR G+ YK YP
Sbjct: 130 PEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYP 189
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSK 487
TYD ACP VD+ EG+THALR++EY DR+AQ++ IQ+ LG+R+ I+ F+R+N + T+LSK
Sbjct: 190 TYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSK 249
Query: 488 RKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547
RKL WFV NG V GWDD RFPT++GI RRG+ ++AL F+ QGAS+ + ++W K W
Sbjct: 250 RKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAE 309
Query: 548 NKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPR--HKKYEGAGEKATTYTKRIW 605
NKK ID R A+ + LT+T+ ++ H K G G++A +
Sbjct: 310 NKKEIDKRAKRFMAIDKADHTALTVTNADEEADFAFSETDCHPKDPGFGKRAMRICDEVL 369
Query: 606 IDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLP 665
++ AD + I E+I L+ WG V EIS+ L G +G K K K++W+
Sbjct: 370 LEKADTEDIQLGEDIVLLRWG---VIEISKIDGD----LEGHFIPDGDFKAAKKKISWIA 422
Query: 666 ETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLE 725
+ ++ + + L FD LI K+KLEE + F D +NP T ET IGD+ ++ LK +I+QLE
Sbjct: 423 DVSDNIPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAETDVIGDAGLKTLKEHDIIQLE 482
Query: 726 RKGYFRCDVPFTRSSKPVVLFAIPDGRQQAV 756
R+G++R D P+ KP++LF IPDG+++A+
Sbjct: 483 RRGFYRVDRPYMGEEKPLILFMIPDGKKKAM 513
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 463 bits (1192), Expect = e-155
Identities = 163/521 (31%), Positives = 257/521 (49%), Gaps = 40/521 (7%)
Query: 216 SKEQQGVKGDVS-EKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQ 274
+EQ+ + + + K + +LP A++G+V +RFAP PSG LHIGH++AA+LN
Sbjct: 59 PEEQKELMKRLGLDIKKKEKKRKGLRELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNH 118
Query: 275 YFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAEN 334
+A++Y G+LI+RFDDT+P + E D +L+D+E LG+K++ V Y SD +
Sbjct: 119 EYAKKYDGKLIIRFDDTDPRRVDPEAYDMILEDLEWLGVKWDEVVYQSDRIETYYDYTRK 178
Query: 335 LIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKL 394
LI GKAYV D E+ ++ R G CR+ S+EEN++ W+EM+ G E G +R K
Sbjct: 179 LIEMGKAYVCDCRPEEFRELRNRGEACHCRDRSVEENLERWEEMLEGKEEGGSVVVRVKT 238
Query: 395 DMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHD- 453
D++ N ++RD V +R PH R G KY+VYPT DF+ D G+TH LR ++ D
Sbjct: 239 DLKHKNPAIRDWVIFRIVKTPHPRTGDKYRVYPTMDFSVAIDDHLLGVTHVLRGKDHIDN 298
Query: 454 -RNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQG 512
R +Y + + +++ V L + ++ G+ GWDDPR PT++
Sbjct: 299 RRKQEYIYRYFGWEPPEFIHWGRLKIDDVRALSTSSARKGILR-GEYSGWDDPRLPTLRA 357
Query: 513 IVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTL 572
I RRG+ EA+ +F+L G N M W ++ +N+KIID R+ + ++ +
Sbjct: 358 IRRRGIRPEAIRKFMLSIGVKINDVTMSWKNIYALNRKIIDEEARRYFFIWNPVKIEI-- 415
Query: 573 TDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKE 632
G +P P H + GE+ I++ D + E + LMD N I +
Sbjct: 416 -VGLPEPKRVERPLHPDHPEIGERVLILRGEIYVPKDDLEEG--VEPVRLMDAVNVIYSK 472
Query: 633 ISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGED 692
LEG+ K K + WLP + V + ++ D I + +E
Sbjct: 473 KELRYHS--------EGLEGARKLGKSIIHWLPA-KDAVKVKVIMPDASIVEGVIEADAS 523
Query: 693 FLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCD 733
L+V G+++Q ER G+ R D
Sbjct: 524 ELEV----------------------GDVVQFERFGFARLD 542
>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 377 bits (972), Expect = e-122
Identities = 188/529 (35%), Positives = 280/529 (52%), Gaps = 49/529 (9%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
+V RF PEP+GYLHIGH+K+ LN AQ Y G+ +RFDDTNP KE E+VD++ +D
Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKED 87
Query: 308 IETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD----GIESK 362
+ LG + + Y SDYF L E A LI++GKAYVDD E++++ R G S
Sbjct: 88 VRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSP 147
Query: 363 CRNNSIEENMKLWKEMIAGS-ERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGS 421
R+ S+EEN+ L++ M AG G LR K+DM PN ++RDPV YR HHR G
Sbjct: 148 YRDRSVEENLDLFERMRAGEFPEG-SAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGD 206
Query: 422 KYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKV-HIYEFSRLNM 480
K+ +YP YDFA DA EGITH+L + E+ D Y + ++L + YEFSRLN+
Sbjct: 207 KWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRLNL 266
Query: 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLME 540
YT++SKRKL V+ VDGWDDPR PT+ G+ RRG E++ +F G +K ++++
Sbjct: 267 TYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVID 326
Query: 541 WDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGP-DKPFVRIIPRHKKYEGAGEKATT 599
L + ++ ++ PR AV+ + L +T+ P + P H + G +
Sbjct: 327 MSMLESCIREDLNENAPRAMAVL--DPLKLVITNYPEGQVEELEAPNHPEDPEMGTREVP 384
Query: 600 YTKRIWIDHADAQL--------ISANEEITLMDWGNA-IVK--EISRDQDGNVTQ----- 643
+++ ++I+ D + +E+ L NA ++K E+ +D DGN+T+
Sbjct: 385 FSRELYIEREDFMEEPPKKYFRLVPGKEVRLR---NAYVIKCEEVVKDADGNITEIHCTY 441
Query: 644 ----LSGFLHLEGSVKNTKLK--LTWLPETNEL---VNLTLVGFDYLITKKKLEEGEDFL 694
LSG K+K + W+ + + V L +D L T G+DFL
Sbjct: 442 DPDTLSG-----NPADGRKVKGTIHWVSAAHAVPAEVRL----YDRLFTVPNPAAGKDFL 492
Query: 695 DVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
D LNP + + ++ + K + Q ER+GYF D + K V
Sbjct: 493 DFLNPDSLVIKQGFVEPSLADAKPEDRFQFEREGYFCAD-KDSTPGKLV 540
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 350 bits (899), Expect = e-115
Identities = 123/315 (39%), Positives = 174/315 (55%), Gaps = 10/315 (3%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+GYLHIGH++ AL N FA+ Y G+ I+RFDDT+P +E E+ +++L+D+
Sbjct: 1 KVRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDL 60
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD--GIESKCRN 365
+ LGIK+ E Y SD F + AE LI +G AYV E++++ER + + S R
Sbjct: 61 KWLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERP 120
Query: 366 NSIEENMKLWKEMIA-GSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIP---HHRIGS 421
EE ++L++E + G G + LR K+ M+ P +RD V R P H R G
Sbjct: 121 RYDEECLRLFEEEMRKGEAEGGKATLRFKIPMESP-YVMRDLVRGRIKFEPSALHDRTGL 179
Query: 422 KYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNM 480
K+ YPTYDFA DA GITH LR E+ D + I + LG I+E+ RLN+
Sbjct: 180 KWDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNL 239
Query: 481 VYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNL-M 539
T LSKRKL V +V GW DP + + RRG E + +F + K+ +L
Sbjct: 240 DGTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNR 299
Query: 540 EWDKLWTINKKIIDP 554
L ++K +D
Sbjct: 300 VSKSLEAFDRKKLDW 314
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 335 bits (860), Expect = e-106
Identities = 174/514 (33%), Positives = 275/514 (53%), Gaps = 23/514 (4%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
V RF PEP+GYLHIGH+K+ LN +A+ Y G +RFDDTNP KE E+V+++ +D+E
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 310 TLGIKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER----MDGIESKCR 364
LG K+E + Y+SDYF +L AE LI++G AYVD+ E++++ R G S R
Sbjct: 61 WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYR 120
Query: 365 NNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYK 424
+ SIEEN+ L+++M G + + LR K+DM P +RDPV YR PHH+ G+K+
Sbjct: 121 DRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWC 180
Query: 425 VYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV-RKVHIYEFSRLNMVYT 483
+YP YDF DA E ITH+L + E+ D Y + +++ + + YEFSRLN+ T
Sbjct: 181 IYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240
Query: 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDK 543
+LSKRKL V + V GWDDPR PT+ G+ RRG ++ +F G +K N +E +
Sbjct: 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVR 300
Query: 544 LWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKR 603
L + ++ ++ PR AVI+ V+ + + D+ + IP H GE+ +T
Sbjct: 301 LESCIREDLNENAPRAMAVIDPVEVV--IENLSDEYELATIPNHPNTPEFGERQVPFTNE 358
Query: 604 IWIDHADAQ--------LISANEEITLMDWGNAIVKEISRDQDGNVTQL-----SGFLHL 650
+ID AD + + +E+ L + + + +D G +T + + L
Sbjct: 359 FYIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAAGKITTIFCTYDNKTLGK 418
Query: 651 EGSV-KNTKLKLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIG 709
E + + K + W+ +++ T + +D L +DFL V+NP +
Sbjct: 419 EPADGRKVKGVIHWVSASSKYPTETRL-YDRLFKVPNPGAPDDFLSVINPESLVIKQGFM 477
Query: 710 DSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
+ ++ + + Q ER+GYF D + + K V
Sbjct: 478 EHSLGDAVANKRFQFEREGYFCLDSKESTTEKVV 511
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 326 bits (839), Expect = e-104
Identities = 139/494 (28%), Positives = 211/494 (42%), Gaps = 39/494 (7%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR RFAP P+GYLHIGH++ ALLN +A++Y G+ I+R +DT+P +E+ E D +L+D+
Sbjct: 9 GVRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDL 68
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPR---EQMQKERMDGIESKCR 364
E LG+ + E Y S+ F E AE LI +GKAYV E+M++ R E
Sbjct: 69 EWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPS 128
Query: 365 NNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRC--NPIPHHRIGSK 422
+ E N+ L+++M A G +R K+ M P RD V R P + +
Sbjct: 129 YDRDERNLTLFEKM-ADLGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILR 187
Query: 423 YKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVY 482
Y YPTY+FA D GITH LR ++ D + + E LG L
Sbjct: 188 YDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNED 247
Query: 483 -TLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEW 541
LSKRK + +V+GW P P + ++ RG EA+ F LE+G +
Sbjct: 248 GKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVS 307
Query: 542 DKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYT 601
++K +D + PR+ V V++ + +P + + GE+ T
Sbjct: 308 KSPAAFDRKKLDWLNPRYMRVDPV-EVVIENLKPHLEEEGATLPLNPEM---GERVVPLT 363
Query: 602 KR--IWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKL 659
K I I+ D EE+ L N IV E+ L S +
Sbjct: 364 KETLIEIERLDFFFFEDKEEVRLKRLANVIVAEVLEK---------DAEGLITSDWTKEN 414
Query: 660 KLTWLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRG 719
+ W+ L + + + L G ++ +T + G
Sbjct: 415 IIHWVKAVARLFGVKG-PKLFPPLRVALTGGYVEPEL------ADTIELL---------G 458
Query: 720 EILQLERKGYFRCD 733
+ +Q ER GY D
Sbjct: 459 KEVQFERLGYALAD 472
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 312 bits (800), Expect = 5e-95
Identities = 179/551 (32%), Positives = 271/551 (49%), Gaps = 43/551 (7%)
Query: 227 SEKGKAGSRPSF-----EVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQ 281
+ + + P+F E DL +V RF PEP+GYLHIGH+K+ LLN A+ Y
Sbjct: 4 APRPRMLVSPNFITEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYG 63
Query: 282 GQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGK 340
G+ +R DDTNP E E+V+ + D+ LG + E + Y SDYF + AE LI+ G
Sbjct: 64 GRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGL 123
Query: 341 AYVDDTPREQMQKERMD----GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDM 396
AYVD E++++ R G S R+ S+EEN+ L++ M AG LR K+DM
Sbjct: 124 AYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDM 183
Query: 397 QDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA 456
PN LRDP+ YR H+R G ++ +YP YDFA P DA EG+TH++ + E+ + A
Sbjct: 184 SSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRA 243
Query: 457 QYYRIQEDLGVR--KVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIV 514
Y + + LG + YEF+RL + YT++SKRKL V+ G V GWDDPR PT+ G
Sbjct: 244 IYDWVLDHLGPWPPRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQR 303
Query: 515 RRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTD 574
RRG+ EA+ F + G +K + ++ L + ++ PR AV++ +V++
Sbjct: 304 RRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLP 363
Query: 575 GP-----DKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQL--------ISANEEIT 621
D P+ P EG+ + +T+ ++I+ D ++ E+
Sbjct: 364 AGKVEELDLPY---WPHDVPKEGS--RKVPFTRELYIERDDFSEDPPKGFKRLTPGREVR 418
Query: 622 LMDWGNAIVKEISRDQDGNVTQLSGFLHLE-----GSVKNTKLKLTWLPETNEL---VNL 673
L E+ RD DG VT+L E + + + W+ + L V L
Sbjct: 419 LRGAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRL 478
Query: 674 TLVGFDYLITKKKLEEGE-DFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRC 732
+D L + E + DFL+ LNP + + +R+ Q ER+GYF
Sbjct: 479 ----YDRLFKVPQPEAADEDFLEFLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWA 534
Query: 733 DVPFTRSSKPV 743
D +R V
Sbjct: 535 DPVDSRPDALV 545
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 305 bits (783), Expect = 2e-94
Identities = 161/502 (32%), Positives = 254/502 (50%), Gaps = 50/502 (9%)
Query: 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKES--N 298
LP+AE GKV +RFAP PSG LH+GH++AA+LN +A+ Y G+ I+RF+DT+P +
Sbjct: 93 PLPNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDP 152
Query: 299 EFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDG 358
E D +L+D++ LG+K++ V SD E A LI G AYV E+ ++ R G
Sbjct: 153 EAYDMILEDLKWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAG 212
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHR 418
R+ S EEN++LW++M+ G + E +R K D++ PN S+RD V +R PH R
Sbjct: 213 KPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPR 272
Query: 419 IGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNA--QYYRIQEDLGVRKVHIYEFS 476
+G KY+V+PTY+FA D G+TH LR + H N Q Y I + G +
Sbjct: 273 VGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKD-HIDNTEKQRY-IYDYFGWEYPETIHYG 330
Query: 477 RLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNL 536
RL + +LS K+ ++ G+ GWDDPR PT++ + RRG+L EA+ + I+E G +
Sbjct: 331 RLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETD 390
Query: 537 NLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEK 596
+ W+ L+ IN+K+IDP+ R+ V D V L + P IP H GE+
Sbjct: 391 ATISWENLYAINRKLIDPIANRYFFV-RD-PVELEIEGAE--PLEAKIPLHPDRPERGER 446
Query: 597 ATTYTKRIWIDHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEG---- 652
++++ D + + + LMD N + +S D+
Sbjct: 447 EIPVGGKVYVSSDDLEAE--GKMVRLMDLFNVEITGVSVDK----------ARYHSDDLE 494
Query: 653 SVKNTKLKLT-WLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDS 711
+ K + W+PE +E V + ++ +G D + +
Sbjct: 495 EARKNKAPIIQWVPE-DESVPVRVLK----------PDGGDI------------EGLAEP 531
Query: 712 NMRNLKRGEILQLERKGYFRCD 733
++ +L+ +I+Q ER G+ R D
Sbjct: 532 DVADLEVDDIVQFERFGFVRID 553
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 281 bits (720), Expect = 3e-83
Identities = 171/505 (33%), Positives = 274/505 (54%), Gaps = 23/505 (4%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
GKV RF PEP+GYLHIGH+KA ++ A+ G +RFDDTNP E E++D++ +
Sbjct: 263 GKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEI 322
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
+E +G + +TYTSDYF +L E+A LIR+G AYVD E++++ R + S R+
Sbjct: 323 VEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRP 382
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
IEE++KL+++M G + LR K DMQ+ N ++ D + YR PH G K+ +YP
Sbjct: 383 IEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP 442
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSK 487
+YD+A VD+ E ITH+L + E+ R A YY + + LG+ + +++E+SRLN+ T++SK
Sbjct: 443 SYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGLYQPYVWEYSRLNVTNTVMSK 502
Query: 488 RKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLN-LMEWDKLWT 546
RKL V VDGWDDPR T+ G+ RRG+ A+ F G +++ N L+ D+L
Sbjct: 503 RKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEH 562
Query: 547 INKKIIDPVCPRHTAVIEDRRVLLT-LTDGP-DKPFVRIIPRHKKYEGAGEKATTYTKRI 604
++ ++ PR V+ +V++T L G + + P + + + +++ +
Sbjct: 563 HIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFSRVV 622
Query: 605 WIDHADAQLIS-------ANEEITLMDWGNAI--VKEISRDQDGNVTQLSGFLHLE-GSV 654
+I+ +D +L A + L+ + I + D + V ++ E
Sbjct: 623 YIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTDVVLADDNETVVEI----RAEYDPE 678
Query: 655 KNTKLK--LTWLPETNELVNLTLVG---FDYLITKKKLEEGEDFLDVLNPCTRFE-TAAI 708
K TK K L W+ E + V V FD L + E ED+L+ LNP ++ + A
Sbjct: 679 KKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAELEDWLEDLNPQSKEVISGAY 738
Query: 709 GDSNMRNLKRGEILQLERKGYFRCD 733
++++ K G+ Q ER GYF D
Sbjct: 739 AVPSLKDAKVGDRFQFERLGYFAVD 763
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 261 bits (668), Expect = 4e-82
Identities = 76/143 (53%), Positives = 101/143 (70%)
Query: 416 HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEF 475
HHR G K+ +YPTYDFA P VD+ EGITH+L + E+ DR YY + + L + + H +EF
Sbjct: 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155
Query: 476 SRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN 535
SRLN+ YT++SKRKLL V G VDGWDDPR PT++G+ RRG+ EA+ QFIL QG SK
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215
Query: 536 LNLMEWDKLWTINKKIIDPVCPR 558
+ ++WDKL +K ++P PR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238
Score = 173 bits (442), Expect = 1e-49
Identities = 57/95 (60%), Positives = 72/95 (75%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KV RF PEP+GYLHIGH+KA LLN +A++Y G+ +RFDDTNP KE E+VD++ +D+
Sbjct: 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60
Query: 309 ETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYV 343
+ LGIK VTY SDYF L E AE LI++GKAYV
Sbjct: 61 KWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYV 95
>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 266 bits (680), Expect = 1e-79
Identities = 158/508 (31%), Positives = 265/508 (52%), Gaps = 18/508 (3%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKD 307
GK RF PEP+G+LHIGH+K+ LN A+ + G+ +R+DDTNP E ++D +++
Sbjct: 50 GKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEM 109
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
++ +G K + VT++SDYF L E A LI+ GKAYVD + ++++++R +S RN S
Sbjct: 110 VKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRS 169
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
+EEN+ L++ M G E LR K DM+ N ++RD + YR + H K+ +YP
Sbjct: 170 VEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYP 229
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSK 487
+YDF +D+ E I ++L + E+ R Y+ + E+L + + H++EFSRLN+ +LLSK
Sbjct: 230 SYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSK 289
Query: 488 RKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTI 547
RK+ V+ G V G+DDPR T+ G+ RRG A+ +F G ++++N+++ L
Sbjct: 290 RKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENT 349
Query: 548 NKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWID 607
++ +D C R VI+ +V++ D P H + G + +T ++D
Sbjct: 350 LREDLDERCERRLMVIDPIKVVV---DNWKGEREFECPNHPRKPELGSRKVMFTDTFYVD 406
Query: 608 HADAQLISANEE----------ITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNT 657
+D + N + + L GN + K D G + + + E K
Sbjct: 407 RSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVDAAGQPSVIHVDIDFERKDK-P 465
Query: 658 KLKLTWLPETNEL-VNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNL 716
K ++W+ T V + L ++ L+ + +FL ++ + + + + N
Sbjct: 466 KTNISWVSATACTPVEVRL--YNALLKDDRAAIDPEFLKFIDEDSEVVSHGYAEKGIENA 523
Query: 717 KRGEILQLERKGYFRCDVPFTRSSKPVV 744
K E +Q ER GYF D P TR V+
Sbjct: 524 KHFESVQAERFGYFVVD-PDTRPDHLVM 550
>gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q),
anti-codon binding domain. Other tRNA synthetase
sub-families are too dissimilar to be included. This
family includes only glutamyl and glutaminyl tRNA
synthetases. In some organisms, a single glutamyl-tRNA
synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 174
Score = 142 bits (360), Expect = 3e-39
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 556 CPRHTAVIEDRRVLLTLTDGPDKPFVRI-IPRHKKYEGAGEKATTYTKRIWIDHADAQLI 614
PR+ AV++ V + + + P+ +P H K G + +++ I+I+ D + +
Sbjct: 1 APRYMAVLD--PVKVVIENYPEGEEEEAEVPNHPKNPELGTRKVPFSREIYIEREDFKRL 58
Query: 615 SANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLH---LEGSVKNTKLKLTWLPETNELV 671
EE+ LM N V E+ +D+DGNVT+L L G+ K + W+ + +
Sbjct: 59 KPGEEVRLMGAYNIKVTEVVKDEDGNVTELHCTYDGDSLGGARKVKG-IIHWVSADDAVP 117
Query: 672 NLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFE-TAAIGDSNMRNLKRGEILQLERKGYF 730
+ +D L + +DF +LNP + T + + + NLK G+I+Q ER GYF
Sbjct: 118 A-EVRLYDRLFKDE-----DDFDFLLNPDSLKVITEGLAEPALANLKVGDIVQFERIGYF 171
Query: 731 RCD 733
R D
Sbjct: 172 RVD 174
>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of
non-discriminating glutamyl-tRNA synthetase.
Non-discriminating Glutamyl-tRNA synthetase (GluRS)
cataytic core domain. These enzymes attach Glu to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 240
Score = 117 bits (294), Expect = 2e-29
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 402 SLRDPVYY--------RCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHD 453
S R +YY H R GSKY+V+PT +FA D G+TH LR ++ D
Sbjct: 76 SDRIELYYEYARKLIEMGGAYVHPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHID 135
Query: 454 RNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGI 513
+ I E G + RL + LS K+ +++G+ +GWDDPR PT++ +
Sbjct: 136 NTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRAL 195
Query: 514 VRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558
RRG+ EA+ FI+E G + + W+ L+ IN+K+IDP R
Sbjct: 196 RRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240
Score = 105 bits (263), Expect = 2e-25
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP--AKESNEFVDNLLK 306
KV +RFAP P+G LH+GH++AA+LN +A+ Y G+ I+RFDDT+P + E D + +
Sbjct: 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60
Query: 307 DIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYV 343
D+E LG+K++ V SD E A LI G AYV
Sbjct: 61 DLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAYV 97
>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and
glutaminyl-tRNA synthetase. Glutamyl-tRNA
synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Glu or Gln,
respectively, to the appropriate tRNA. Like other class
I tRNA synthetases, they aminoacylate the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. These enzymes function as monomers. Archaea,
cellular organelles, and some bacteria lack GlnRS. In
these cases, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme. The discriminating form of GluRS
differs from GlnRS and the non-discriminating form of
GluRS in their C-terminal anti-codon binding domains.
Length = 230
Score = 116 bits (291), Expect = 3e-29
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
V RFAP P+GYLHIGH++ AL N FA++Y G+ I+R +DT+P + E+V+++L+D+
Sbjct: 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDL 60
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQG 339
+ LG+ + E SD F AE LI++G
Sbjct: 61 KWLGLDWDEGPYRQSDRFDLYRAYAEELIKKG 92
Score = 67.9 bits (166), Expect = 1e-12
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 425 VYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVY-T 483
YP Y+F P DA GITH LR ++ D + E LG Y F RL + T
Sbjct: 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152
Query: 484 LLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK 534
LSKRKL T++ + RRG L EAL ++ G SK
Sbjct: 153 KLSKRKL----------------NTTLRALRRRGYLPEALRNYLALIGWSK 187
>gnl|CDD|198322 cd10289, GST_C_AaRS_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of various
Aminoacyl-tRNA synthetases and similar domains.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily;
This model characterizes the GST_C-like domain found in
the N-terminal region of some eukaryotic AaRSs, as well
as similar domains found in proteins involved in protein
synthesis including Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 2 (AIMP2),
AIMP3, and eukaryotic translation Elongation Factor 1
beta (eEF1b). AaRSs comprise a family of enzymes that
catalyze the coupling of amino acids with their matching
tRNAs. This involves the formation of an aminoacyl
adenylate using ATP, followed by the transfer of the
activated amino acid to the 3'-adenosine moiety of the
tRNA. AaRSs may also be involved in translational and
transcriptional regulation, as well as in tRNA
processing. AaRSs in this subfamily include GluRS from
lower eukaryotes, as well as GluProRS, MetRS, and CysRS
from higher eukaryotes. AIMPs are non-enzymatic
cofactors that play critical roles in the assembly and
formation of a macromolecular multi-tRNA synthetase
protein complex found in higher eukaryotes. The
GST_C-like domain is involved in protein-protein
interactions, mediating the formation of aaRS complexes
such as the MetRS-Arc1p-GluRS ternary complex in lower
eukaryotes and the multi-aaRS complex in higher
eukaryotes, that act as molecular hubs for protein
synthesis. AaRSs from prokaryotes, which are active as
dimers, do not contain this GST_C-like domain.
Length = 82
Score = 100 bits (251), Expect = 1e-25
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 108 EAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR 167
EA ++D+WLD G E E ++ YL RTF+VG+SL++ D+A++SAL +GQ+
Sbjct: 1 EAAQVDQWLDLAGSLLKGKELEALLKSLNSYLASRTFLVGYSLTLADVAVFSALYPSGQK 60
Query: 168 WDSLRKSKKYQNLVRWFNSLSA 189
K KK+ ++ RWFN +
Sbjct: 61 LSDKEK-KKFPHVTRWFNHIQN 81
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 103 bits (260), Expect = 2e-23
Identities = 91/342 (26%), Positives = 140/342 (40%), Gaps = 64/342 (18%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+GYLHIG ++ AL N FA+ G+ ++R +DT+ + E + +L+ +
Sbjct: 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGL 60
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY--------VDDTPREQMQKERMDGI 359
+ LGI + E Y S + A+ L+ +G AY ++ EQ +
Sbjct: 61 KWLGISWDEGPYYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRY 120
Query: 360 ESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQD--------PNKSLRDPVYYRC 411
+ CRN EE + I R + G + D N L D V +
Sbjct: 121 DRHCRNLHNEEIENALAKGIPPVVR-FKIPQEGVVSFNDQVRGEITFQNSELDDFVILKS 179
Query: 412 NPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVH 471
+ GS PTY+FA D ITH +R ++ + I + LG +
Sbjct: 180 D-------GS-----PTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYKALGWK--- 224
Query: 472 IYEFSRLNMVYTL----LSKRK----LLWFVQNGKVD----------GW---DDPRFPTV 510
I F+ L M+ LSKR ++ F + G + GW DD F ++
Sbjct: 225 IPVFAHLPMILGEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSL 284
Query: 511 QGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKII 552
+ E + F L SK+ +W KL +N I
Sbjct: 285 E---------ELIEIFSLN-RVSKSPAKFDWKKLQWLNAHYI 316
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 84.1 bits (209), Expect = 4e-17
Identities = 37/94 (39%), Positives = 58/94 (61%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
V RFAP P+GYLH+G+++ ALLN +A+++ G+ I+R DDT+ + E+ D + +D+
Sbjct: 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDL 61
Query: 309 ETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAY 342
+ LGI ++ SD F E AE L G+ Y
Sbjct: 62 KWLGINWDRTFRQSDRFDRYDEAAEKLKAAGRLY 95
>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating
glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA
synthetase (GluRS) catalytic core domain . The
discriminating form of GluRS is only found in bacteria
and cellular organelles. GluRS is a monomer that
attaches Glu to the appropriate tRNA. Like other class
I tRNA synthetases, GluRS aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 239
Score = 78.4 bits (194), Expect = 4e-16
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+G+LHIG ++ AL N FA+++ G+ I+R +DT+ + E + +L+ +
Sbjct: 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60
Query: 309 ETLGIKY-ETVTYTSDYFP 326
+ LG+ + E Y P
Sbjct: 61 KWLGLDWDEGPDVGGPYGP 79
Score = 38.0 bits (89), Expect = 0.010
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 24/143 (16%)
Query: 426 YPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRL-NMVYTL 484
+PTY A D GITH +R E+ + + E LG + N
Sbjct: 103 FPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDGKK 162
Query: 485 LSKRKLLWFVQNGKVDG--------------WDDPRFPTVQGIVRRGLLVEALI-QFILE 529
LSKRK + + + +G W P +E LI F LE
Sbjct: 163 LSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDG-------EEFFTLEELIELFDLE 215
Query: 530 QGASKNLNLMEWDKLWTINKKII 552
+ SK+ + + +KL +N + I
Sbjct: 216 R-VSKSPAIFDPEKLDWLNGQYI 237
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 80.1 bits (199), Expect = 1e-15
Identities = 71/230 (30%), Positives = 103/230 (44%), Gaps = 51/230 (22%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
KVR RFAP P+GYLHIG ++ AL N FA+ + G+ I+R +DT+ + + E + +L+ +
Sbjct: 4 KVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGL 63
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPRE-------QM 351
+ LG+ + E Y P D+ E AE L+ +GKAY TP E Q
Sbjct: 64 KWLGLDWDEGPD-GGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQR 122
Query: 352 QKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD------- 398
+ +CR+ + EE +A G +R G++ D
Sbjct: 123 AAGEPPRYDGRCRDLTKEEV----AARLA---AGEPPVIRFKVPDEGEVVFDDLVRGEIE 175
Query: 399 -PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
PN L D V R + G PTY+FA D GITH +R
Sbjct: 176 FPNSELDDFVILRSD-------G-----TPTYNFAVVVDDHLMGITHVIR 213
>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 76.8 bits (190), Expect = 3e-15
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
RFAP PSG LH G AAL + A+ + G+ ++R +D +P +E D +L D+E LG
Sbjct: 9 RFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLG 68
Query: 313 IKYET-VTYTSDYFPDLMEMAENLIRQGKAY 342
+ ++ V Y S + L QG Y
Sbjct: 69 LHWDGPVLYQSQRHDAYRAALDRLRAQGLVY 99
>gnl|CDD|198342 cd10309, GST_C_GluProRS_N, Glutathione S-transferase
C-terminal-like, alpha helical domain of bifunctional
Glutamyl-Prolyl-tRNA synthetase. Glutathione
S-transferase (GST) C-terminal domain family,
bifunctional GluRS-Prolyl-tRNA synthetase (GluProRS)
subfamily; This model characterizes the GST_C-like
domain found in the N-terminal region of GluProRS from
higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs)
comprise a family of enzymes that catalyze the coupling
of amino acids with their matching tRNAs. This involves
the formation of an aminoacyl adenylate using ATP,
followed by the transfer of the activated amino acid to
the 3'-adenosine moiety of the tRNA. AaRSs may also be
involved in translational and transcriptional
regulation, as well as in tRNA processing. The
GST_C-like domain of GluProRS may be involved in
protein-protein interactions, mediating the formation of
the multi-aaRS complex in higher eukaryotes. The
multi-aaRS complex acts as a molecular hub for protein
synthesis. AaRSs from prokaryotes, which are active as
dimers, do not contain this GST_C-like domain.
Length = 81
Score = 69.3 bits (170), Expect = 1e-14
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 108 EAGEIDEWLDYTPVFSSGS-EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQ 166
E E+D W+ ++ S +F +A +Y+DK L RT++VG+SL++ D A+W+AL G G+
Sbjct: 1 EQTEVDHWISFSAGRLSCDQDFSSALSYLDKALSLRTYLVGNSLTLADFAVWAALRGNGE 60
Query: 167 RWDSLRKSKKYQNLVRWFNSLSA 189
W + + +KY N+ RWF +S+
Sbjct: 61 -WLASK--EKYVNVTRWFKFISS 80
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 76.3 bits (187), Expect = 2e-14
Identities = 37/111 (33%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
RFAP P+G+LHIG ++ AL N FA+ + G+ ++R +DT+ + + E V+ + ++ LG
Sbjct: 8 RFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLG 67
Query: 313 IKYE-TVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESK 362
+ + V + S E A L++ GKAY T +E+++++R +E+K
Sbjct: 68 LDWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENK 118
>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 74.3 bits (183), Expect = 7e-14
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 9/226 (3%)
Query: 252 LRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESN-EFVDNLLKDIET 310
LRFAP P+G +HIG+ +AA+ N A++ ++R +DT+ KE N E D + +I
Sbjct: 2 LRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTD--KERNIEGKDKEILEILN 59
Query: 311 L-GIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKC--RNNS 367
L GI ++ + Y S+ +MAE L+ + KA+ E+++ ++ K R +
Sbjct: 60 LFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDG 119
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
EN L + + + L+ +++ V + + I I K P
Sbjct: 120 TCEN--LEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRADKT-P 176
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIY 473
TY+FAC D I+ +R ++ + I+E LG K Y
Sbjct: 177 TYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITY 222
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 74.0 bits (182), Expect = 1e-13
Identities = 70/255 (27%), Positives = 109/255 (42%), Gaps = 59/255 (23%)
Query: 234 SRPSFEVD---LPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDD 290
SR F V +++ G VR+RFAP P+G LH+G ++ AL N FA+ G+ ++R +D
Sbjct: 27 SRRRFSVRAAAAGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED 86
Query: 291 TNPAKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFP-------DLM-EMAENLIRQGKA 341
T+ A+ + E + +L+D++ LG+ + E +Y P + + AE L+ G
Sbjct: 87 TDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHV 146
Query: 342 Y---VDDTPREQMQKE--------RMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCL 390
Y D E M++E R G K S EE + E+ +G
Sbjct: 147 YPCFCTDEELEAMKEEAELKKLPPRYTG---KWATASDEE---VQAEL----AKGTPYTY 196
Query: 391 R------GKLDMQD--------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFV 436
R G + + D +L D V R N P Y+F
Sbjct: 197 RFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQ------------PVYNFCVAVD 244
Query: 437 DAKEGITHALRSSEY 451
DA GITH +R+ E+
Sbjct: 245 DATMGITHVIRAEEH 259
>gnl|CDD|198339 cd10306, GST_C_GluRS_N, Glutathione S-transferase C-terminal-like,
alpha helical domain of Glutamyl-tRNA synthetase.
Glutathione S-transferase (GST) C-terminal domain
family, Glutamyl-tRNA synthetase (GluRS) subfamily; This
model characterizes the GST_C-like domain found in the
N-terminal region of GluRS from lower eukaryotes.
Aminoacyl-tRNA synthetases (aaRSs) comprise a family of
enzymes that catalyze the coupling of amino acids with
their matching tRNAs. This involves the formation of an
aminoacyl adenylate using ATP, followed by the transfer
of the activated amino acid to the 3'-adenosine moiety
of the tRNA. AaRSs may also be involved in translational
and transcriptional regulation, as well as in tRNA
processing. The GST_C-like domain of GluRS is involved
in protein-protein interactions. This domain mediates
the formation of the MetRS-Arc1p-GluRS ternary complex
found in lower eukaryotes, which is considered an
evolutionary intermediate between prokaryotic aaRS and
the multi-aaRS complex found in higher eukaryotes. AaRSs
from prokaryotes, which are active as dimers, do not
contain this GST_C-like domain.
Length = 87
Score = 65.5 bits (160), Expect = 3e-13
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 111 EIDEWLDYTPVFSSGSEF---ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQR 167
++ EW+D+ +F A +D +L RTF+VG+SLS+ DIA+W AL G G
Sbjct: 6 QVAEWIDFATTLLVLKDFKALSQALEELDSHLTLRTFIVGYSLSLADIAVWGALRGNGVA 65
Query: 168 WDSLRKSKKYQNLVRWFNSL 187
SL K+K Y NL RWF+ L
Sbjct: 66 -GSLIKNKVYVNLSRWFSFL 84
>gnl|CDD|234370 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid [Protein
synthesis, tRNA and rRNA base modification].
Length = 271
Score = 57.2 bits (139), Expect = 7e-09
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
R RFAP PSG LH G AAL + A+ + G+ +VR +D +P +E D++L+ +E
Sbjct: 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLE 60
Query: 310 TLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY 342
G+ + V Y S + L+ G AY
Sbjct: 61 AYGLHWDGEVVYQSQRHALYQAALDRLLAAGLAY 94
>gnl|CDD|198338 cd10305, GST_C_AIMP3, Glutathione S-transferase C-terminal-like,
alpha helical domain of Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 3.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase complex-Interacting
Multifunctional Protein (AIMP) 3 subfamily; AIMPs are
non-enzymatic cofactors that play critical roles in the
assembly and formation of a macromolecular multi-tRNA
synthetase protein complex that functions as a molecular
hub to coordinate protein synthesis. There are three
AIMPs, named AIMP1-3, which play diverse regulatory
roles. AIMP3, also called p18 or eukaryotic translation
elongation factor 1 epsilon-1 (EEF1E1), contains a
C-terminal domain with similarity to the C-terminal
alpha helical domain of GSTs. It specifically interacts
with methionyl-tRNA synthetase (MetRS) and is
translocated to the nucleus during DNA synthesis or in
response to DNA damage and oncogenic stress. In the
nucleus, it interacts with ATM and ATR, which are
upstream kinase regulators of p53. It appears to work
against DNA damage in cooperation with AIMP2, and
similar to AIMP2, AIMP3 is also a haploinsufficient
tumor suppressor. AIMP3 transgenic mice have shorter
lifespans than wild-type mice and they show
characteristics of progeria, suggesting that AIMP3 may
also be involved in cellular and organismal aging.
Length = 101
Score = 51.1 bits (123), Expect = 4e-08
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 111 EIDEWLDYTPVFSSGSEFENACTYV----DKYLERRTFVVGHSLSIVDIAIWSALAGTGQ 166
++D+WL+Y + + + + + YL+ RT++VGH L++ D+ ++ L +
Sbjct: 6 QVDQWLEYRVTQVAPASDKADAKSLLKELNSYLQDRTYLVGHKLTLADVVLYYGLHPIMK 65
Query: 167 RWDSLRKSKKYQNLVRWFN 185
K ++Y N+ RWF+
Sbjct: 66 DLSPQEK-EQYLNVSRWFD 83
>gnl|CDD|198290 cd03181, GST_C_EF1Bgamma_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of the Gamma
subunit of Elongation Factor 1B and similar proteins.
Glutathione S-transferase (GST) C-terminal domain
family, Gamma subunit of Elongation Factor 1B
(EF1Bgamma) subfamily; EF1Bgamma is part of the
eukaryotic translation elongation factor-1 (EF1) complex
which plays a central role in the elongation cycle
during protein biosynthesis. EF1 consists of two
functionally distinct units, EF1A and EF1B. EF1A
catalyzes the GTP-dependent binding of aminoacyl-tRNA to
the ribosomal A site concomitant with the hydrolysis of
GTP. The resulting inactive EF1A:GDP complex is recycled
to the active GTP form by the guanine-nucleotide
exchange factor EF1B, a complex composed of at least two
subunits, alpha and gamma. Metazoan EFB1 contain a third
subunit, beta. The EF1B gamma subunit contains a GST
fold consisting of an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain. The GST-like
domain of EF1Bgamma is believed to mediate the
dimerization of the EF1 complex, which in yeast is a
dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In
addition to its role in protein biosynthesis, EF1Bgamma
may also display other functions. The recombinant rice
protein has been shown to possess GSH conjugating
activity. The yeast EF1Bgamma binds to membranes in a
calcium dependent manner and is also part of a complex
that binds to the msrA (methionine sulfoxide reductase)
promoter suggesting a function in the regulation of its
gene expression. Also included in this subfamily is the
GST_C-like domain at the N-terminus of human valyl-tRNA
synthetase (ValRS) and its homologs. Metazoan ValRS
forms a stable complex with Elongation Factor-1H
(EF-1H), and together, they catalyze consecutive steps
in protein biosynthesis, tRNA aminoacylation and its
transfer to EF.
Length = 123
Score = 51.4 bits (124), Expect = 6e-08
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 28/108 (25%)
Query: 108 EAGEIDEWLDYT-------------P-----------VFSSGSEFENACTYVDKYLERRT 143
EA ++ +W+ + P V + + + A ++++L RT
Sbjct: 1 EAAQVLQWISFANSELLPAAATWVLPLLGIAPYNKKAVDKAKEDLKRALGVLEEHLLTRT 60
Query: 144 FVVGHSLSIVDIAIWSALA-GTGQRWD-SLRKSKKYQNLVRWFNSLSA 189
++VG +++ DI + SAL G D R KKY N+ RWFN++
Sbjct: 61 YLVGERITLADIFVASALLRGFETVLDPEFR--KKYPNVTRWFNTVVN 106
>gnl|CDD|198309 cd03200, GST_C_AIMP2, Glutathione S-transferase C-terminal-like,
alpha helical domain of Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 2.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase complex-Interacting
Multifunctional Protein (AIMP) 2 subfamily; AIMPs are
non-enzymatic cofactors that play critical roles in the
assembly and formation of a macromolecular multi-tRNA
synthetase protein complex that functions as a molecular
hub to coordinate protein synthesis. There are three
AIMPs, named AIMP1-3, which play diverse regulatory
roles. AIMP2, also called p38 or JTV-1, contains a
C-terminal domain with similarity to the C-terminal
alpha helical domain of GSTs. It plays an important role
in the control of cell fate via antiproliferative (by
enhancing the TGF-beta signal) and proapoptotic
(activation of p53 and TNF-alpha) activities. Its roles
in the control of cell proliferation and death suggest
that it is a potent tumor suppressor. AIMP2 heterozygous
mice with lower than normal expression of AIMP2 show
high susceptibility to tumorigenesis. AIMP2 is also a
substrate of Parkin, an E3 ubiquitin ligase that is
involved in the ubiquitylation and proteasomal
degradation of its substrates. Mutations in the Parkin
gene is found in 50% of patients with
autosomal-recessive early-onset parkinsonism. The
accumulation of AIMP2, due to impaired Parkin function,
may play a role in the pathogenesis of Parkinson's
disease.
Length = 96
Score = 49.8 bits (119), Expect = 1e-07
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 92 LRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFS--SGSEFENACTY--VDKYLERRTFVVG 147
R++ R+ + A ID W+D T +F GS E A ++ L R ++VG
Sbjct: 1 ARFLFRLLGDESDDPVNATLIDSWVD-TAIFQLLEGSSKEKAAVLRALNSALGRSPWLVG 59
Query: 148 HSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
++ DIA+WSA+ TG S N+ RW S
Sbjct: 60 SEPTVADIALWSAVLQTGL------ASGAPANVQRWMKSCEN 95
>gnl|CDD|198340 cd10307, GST_C_MetRS_N, Glutathione S-transferase C-terminal-like,
alpha helical domain of Methionyl-tRNA synthetase from
higher eukaryotes. Glutathione S-transferase (GST)
C-terminal domain family, Methionyl-tRNA synthetase
(MetRS) subfamily; This model characterizes the
GST_C-like domain found in the N-terminal region of
MetRS from higher eukaryotes. Aminoacyl-tRNA synthetases
(aaRSs) comprise a family of enzymes that catalyze the
coupling of amino acids with their matching tRNAs. This
involves the formation of an aminoacyl adenylate using
ATP, followed by the transfer of the activated amino
acid to the 3'-adenosine moiety of the tRNA. AaRSs may
also be involved in translational and transcriptional
regulation, as well as in tRNA processing. MetRS is a
class I aaRS, containing a Rossman fold catalytic core.
It recognizes the initiator tRNA as well as the Met-tRNA
for protein chain elongation. The GST_C-like domain of
MetRS from higher eukaryotes is likely involved in
protein-protein interactions, to mediate the formation
of the multi-aaRS complex that acts as a molecular hub
to coordinate protein synthesis. AaRSs from prokaryotes,
which are active as dimers, do not contain this
GST_C-like domain.
Length = 102
Score = 45.2 bits (107), Expect = 5e-06
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 130 NACTYVDKYLERR-TFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLS 188
NA ++D+ L ++ T ++G LS D+ +WSAL G D + NL RWF ++S
Sbjct: 43 NALVHLDQSLLKKSTPLLGDKLSSADVVVWSALYPLGT--DKSALPENLDNLRRWFQNVS 100
Query: 189 A 189
Sbjct: 101 T 101
>gnl|CDD|198324 cd10291, GST_C_YfcG_like, C-terminal, alpha helical domain of
Escherichia coli YfcG Glutathione S-transferases and
related uncharacterized proteins. Glutathione
S-transferase (GST) C-terminal domain family, YfcG-like
subfamily; composed of the Escherichia coli YfcG and
related proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain. YfcG is one of nine GST homologs in
Escherichia coli. It is expressed predominantly during
the late stationary phase where the predominant form of
GSH is glutathionylspermidine (GspSH), suggesting that
YfcG might interact with GspSH. It has very low or no
GSH transferase or peroxidase activity, but displays a
unique disulfide bond reductase activity that is
comparable to thioredoxins (TRXs) and glutaredoxins
(GRXs). However, unlike TRXs and GRXs, YfcG does not
contain a redox active cysteine residue and may use a
bound thiol disulfide couple such as 2GSH/GSSG for
activity. The crystal structure of YcfG reveals a bound
GSSG molecule in its active site. The actual
physiological substrates for YfcG are yet to be
identified.
Length = 110
Score = 43.0 bits (102), Expect = 4e-05
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWS-ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+D+ L + ++ G SI DIAIW Q D + NL RWF L+A
Sbjct: 52 LDRRLAKSKYLAGDEYSIADIAIWPWVARHEWQGID----LADFPNLKRWFERLAA 103
>gnl|CDD|198287 cd03177, GST_C_Delta_Epsilon, C-terminal, alpha helical domain of
Class Delta and Epsilon Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Class Delta and Epsilon subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. The class Delta and Epsilon subfamily
is made up primarily of insect GSTs, which play major
roles in insecticide resistance by facilitating
reductive dehydrochlorination of insecticides or
conjugating them with GSH to produce water-soluble
metabolites that are easily excreted. They are also
implicated in protection against cellular damage by
oxidative stress.
Length = 117
Score = 40.2 bits (95), Expect = 5e-04
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 118 YTPVFSSGSEF--------ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG-TGQRW 168
Y P+ G+E E A +++ +LE +V G L+I D+++ + ++ +
Sbjct: 25 YYPILFGGAEPPEEKLDKLEEALEFLETFLEGSDYVAGDQLTIADLSLVATVSTLEVVGF 84
Query: 169 DSLRKSKKYQNLVRWFNSLSAE 190
D KY N+ W+ L A
Sbjct: 85 D----LSKYPNVAAWYERLKAL 102
>gnl|CDD|198286 cd00299, GST_C_family, C-terminal, alpha helical domain of the
Glutathione S-transferase family. Glutathione
S-transferase (GST) family, C-terminal alpha helical
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK).
Soluble GSTs bear no structural similarity to microsomal
GSTs (MAPEG family) and display additional activities
unique to their group, such as catalyzing thiolysis,
reduction and isomerization of certain compounds. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Based on sequence similarity, different classes of GSTs
have been identified, which display varying tissue
distribution, substrate specificities and additional
specific activities. In humans, GSTs display
polymorphisms which may influence individual
susceptibility to diseases such as cancer, arthritis,
allergy and sclerosis. Some GST family members with
non-GST functions include glutaredoxin 2, the CLIC
subfamily of anion channels, prion protein Ure2p,
crystallins, metaxins, stringent starvation protein A,
and aminoacyl-tRNA synthetases.
Length = 100
Score = 39.8 bits (93), Expect = 5e-04
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS----KKYQNLVR 182
E +++ L R ++ G S+ D+A+ LA R ++L +Y L
Sbjct: 40 ELPALLAALEQLLAGRPYLAGDQFSLADVALAPVLA----RLEALGPYYDLLDEYPRLKA 95
Query: 183 WFNSL 187
W++ L
Sbjct: 96 WYDRL 100
>gnl|CDD|222111 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain.
This domain is closely related to pfam00043.
Length = 69
Score = 37.7 bits (88), Expect = 0.001
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWF 184
++ E A +++ L +++G S+ DIA+ ALA R L Y NL W
Sbjct: 9 AQLERALDALEERLADGPYLLGDRPSLADIALAPALARLDFRGPGLDLRAGYPNLRAWL 67
>gnl|CDD|198288 cd03178, GST_C_Ure2p_like, C-terminal, alpha helical domain of
Ure2p and related Glutathione S-transferase-like
proteins. Glutathione S-transferase (GST) C-terminal
domain family, Ure2p-like subfamily; composed of the
Saccharomyces cerevisiae Ure2p, YfcG and YghU from
Escherichia coli, and related GST-like proteins. Ure2p
is a regulator for nitrogen catabolism in yeast. It
represses the expression of several gene products
involved in the use of poor nitrogen sources when rich
sources are available. A transmissible conformational
change of Ure2p results in a prion called [Ure3], an
inactive, self-propagating and infectious amyloid. Ure2p
displays a GST fold containing an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain. The N-terminal thioredoxin-fold domain is
sufficient to induce the [Ure3] phenotype and is also
called the prion domain of Ure2p. In addition to its
role in nitrogen regulation, Ure2p confers protection to
cells against heavy metal ion and oxidant toxicity, and
shows glutathione (GSH) peroxidase activity. YfcG and
YghU are two of the nine GST homologs in the genome of
Escherichia coli. They display very low or no GSH
transferase, but show very good disulfide bond
oxidoreductase activity. YghU also shows modest organic
hydroperoxide reductase activity. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of GSH with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain.
Length = 110
Score = 39.2 bits (92), Expect = 0.001
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 135 VDKYLERRTFVVGHSLSIVDIAIW---SALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+DK L R ++ G SI DIA++ G S +Y N+ RW ++A
Sbjct: 52 LDKRLSDRPYLAGEEYSIADIALYPWTHYADLGGFADLS-----EYPNVKRWLERIAA 104
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 41.2 bits (97), Expect = 0.002
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 261 YLHIGHSKAA----LLNQYFAQRYQG------QLIVRFDDT--NPAKESNEFVDNL---- 304
Y HIGH++ A +L +Y RY G Q I DD A+E+ E V +
Sbjct: 34 YCHIGHARTAIVFDVLRRYL--RYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERF 91
Query: 305 ----LKDIETLGIKYETVT-YTSDYFPDLMEMAENLIRQGKAYVDD 345
+D++ L + + +++ +++E E LI +G AYV D
Sbjct: 92 IEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSD 137
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 38.6 bits (90), Expect = 0.002
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 252 LRFAPEPSGYLHIGHSKAALLNQYFAQ-----RYQGQLIVRFDDTNPAKE 296
P+GYLHIGH + + + AQ Y+ + I DD
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG 51
>gnl|CDD|198327 cd10294, GST_C_ValRS_N, Glutathione S-transferase C-terminal-like,
alpha helical domain of vertebrate Valyl-tRNA
synthetase. Glutathione S-transferase (GST) C-terminal
domain family, Valyl-tRNA synthetase (ValRS) subfamily;
This model characterizes the GST_C-like domain found in
the N-terminal region of human ValRS and its homologs
from other vertebrates such as frog and zebrafish.
Aminoacyl-tRNA synthetases (aaRSs) comprise a family of
enzymes that catalyze the coupling of amino acids with
their matching tRNAs. This involves the formation of an
aminoacyl adenylate using ATP, followed by the transfer
of the activated amino acid to the 3'-adenosine moiety
of the tRNA. AaRSs may also be involved in translational
and transcriptional regulation, as well as in tRNA
processing. They typically form large stable complexes
with other proteins. ValRS forms a stable complex with
Elongation Factor-1H (EF-1H), and together, they
catalyze consecutive steps in protein biosynthesis, tRNA
aminoacylation and its transfer to EF. The GST_C-like
domain of ValRS from higher eukaryotes is likely
involved in protein-protein interactions, to mediate the
formation of the multi-aaRS complex that acts as a
molecular hub to coordinate protein synthesis. ValRSs
from prokaryotes and lower eukaryotes, such as fungi and
plants, do not appear to contain this GST_C-like domain.
Length = 123
Score = 37.5 bits (87), Expect = 0.004
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 123 SSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
S +E + +D YL+ RT++VG ++++ DIA+ AL + + + N+ R
Sbjct: 40 RSLAELQRVLKVLDCYLKLRTYLVGEAITLADIAVACALLLPFKYVLDPARRESLLNVTR 99
Query: 183 WFNS 186
WF +
Sbjct: 100 WFLT 103
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 38.9 bits (91), Expect = 0.006
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Query: 260 GYLHIGHSKAA----LLNQYF-AQRYQGQLIVRFDDT-----NPAKESNEFVDNL----- 304
HIGH+++A +L +Y A Y Q + F D A++ E L
Sbjct: 21 DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFI 80
Query: 305 ---LKDIETLGIKYETV-TYTSDYFPDLMEMAENLIRQGKAYVDD 345
KD++ L + + +++ +++E E LI++G AYV D
Sbjct: 81 TAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYAYVSD 125
>gnl|CDD|198341 cd10308, GST_C_eEF1b_like, Glutathione S-transferase
C-terminal-like, alpha helical domain of eukaryotic
translation Elongation Factor 1 beta. Glutathione
S-transferase (GST) C-terminal domain family, eukaryotic
translation Elongation Factor 1 beta (eEF1b) subfamily;
eEF1b is a component of the eukaryotic translation
elongation factor-1 (EF1) complex which plays a central
role in the elongation cycle during protein
biosynthesis. EF1 consists of two functionally distinct
units, EF1A and EF1B. EF1A catalyzes the GTP-dependent
binding of aminoacyl-tRNA to the ribosomal A site
concomitant with the hydrolysis of GTP. The resulting
inactive EF1A:GDP complex is recycled to the active GTP
form by the guanine-nucleotide exchange factor EF1B, a
complex composed of at least two subunits, alpha and
gamma. Metazoan EFB1 contain a third subunit, beta.
eEF1b contains a GST_C-like alpha helical domain at the
N-terminal region and a C-terminal guanine nucleotide
exchange domain. The GST_C-like domain likely functions
as a protein-protein interaction domain, similar to the
function of the GST_C-like domains of EF1Bgamma and
various aminoacyl-tRNA synthetases (aaRSs) from higher
eukaryotes.
Length = 82
Score = 35.1 bits (81), Expect = 0.012
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 138 YLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
YL R+++ G+S S D+ ++ L + K+ +L RW+ +++
Sbjct: 37 YLADRSYISGYSPSQADVEVFDKL-------KKAPDATKFPHLARWYRHIAS 81
>gnl|CDD|198325 cd10292, GST_C_YghU_like, C-terminal, alpha helical domain of
Escherichia coli Yghu Glutathione S-transferases and
related uncharacterized proteins. Glutathione
S-transferase (GST) C-terminal domain family, YghU-like
subfamily; composed of the Escherichia coli YghU and
related proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins and
products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST active site is
located in a cleft between the N- and C-terminal
domains. GSH binds to the N-terminal domain while the
hydrophobic substrate occupies a pocket in the
C-terminal domain. YghU is one of nine GST homologs in
the genome of Escherichia coli. It is similar to
Escherichia coli YfcG in that it has poor GSH
transferase activity towards typical substrates. It
shows modest reductase activity towards some organic
hydroperoxides. Like YfcG, YghU also shows good
disulfide bond oxidoreductase activity comparable to the
activities of glutaredoxins and thioredoxins. YghU does
not contain a redox active cysteine residue, and may use
a bound thiol disulfide couple such as 2GSH/GSSG for
activity. The crystal structure of YghU reveals two GSH
molecules bound in its active site.
Length = 118
Score = 35.1 bits (81), Expect = 0.030
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW----DSLRKSKKYQNLVRWFNSLSA 189
+D+ L ++ G +I D+AIW G +Y+++ RW ++A
Sbjct: 52 LDRQLATHKYLAGDEYTIADMAIWPWYGGLALGSLYDAAEFLDVDEYKHVQRWAKDIAA 110
>gnl|CDD|183298 PRK11752, PRK11752, putative S-transferase; Provisional.
Length = 264
Score = 36.1 bits (84), Expect = 0.048
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIWSALAGT--GQRWDSLR--KSKKYQNLVRWFNSLSA 189
DK L ++ G +I DIAIW G +D+ Y+++ RW ++
Sbjct: 191 DKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAE 248
>gnl|CDD|198315 cd03206, GST_C_7, C-terminal, alpha helical domain of an unknown
subfamily 7 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 7; composed of uncharacterized proteins with
similarity to GSTs. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis of
prostaglandins and leukotrienes. The GST fold contains
an N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain.
Length = 100
Score = 34.1 bits (79), Expect = 0.048
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 133 TYVDKYLERRTFVVGHSLSIVDIAIWS--ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+D++L R ++ G +I D+A + ALA G SL + Y + W + A
Sbjct: 43 RLLDQHLAGRDWLAGDRPTIADVACYPYIALAPEGGV--SL---EPYPAIRAWLARVEA 96
>gnl|CDD|215674 pfam00043, GST_C, Glutathione S-transferase, C-terminal domain.
GST conjugates reduced glutathione to a variety of
targets including S-crystallin from squid, the
eukaryotic elongation factor 1-gamma, the HSP26 family
of stress-related proteins and auxin-regulated proteins
in plants. Stringent starvation proteins in E. coli are
also included in the alignment but are not known to have
GST activity. The glutathione molecule binds in a cleft
between N and C-terminal domains. The catalytically
important residues are proposed to reside in the
N-terminal domain. In plants, GSTs are encoded by a
large gene family (48 GST genes in Arabidopsis) and can
be divided into the phi, tau, theta, zeta, and lambda
classes.
Length = 92
Score = 33.8 bits (78), Expect = 0.049
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 126 SEFENACTYVDKYLER-------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQ 178
E E A + K LE +T++VG L++ DIA+ AL +K+
Sbjct: 22 PEVEEALEKLLKVLEALEEVLKGKTYLVGDKLTLADIALAPALDWLYML--EPDPLEKFP 79
Query: 179 NLVRWFNSLSA 189
NL W ++A
Sbjct: 80 NLKAWRKRVAA 90
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 32.9 bits (75), Expect = 0.12
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 253 RFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAK 295
RF EP GYLHIGH+K L+ + Q +VR DD P K
Sbjct: 3 RFPGEP-GYLHIGHAK--LICRAKG--IADQCVVRIDDNPPVK 40
>gnl|CDD|198298 cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of
GTT1-like Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family,
Saccharomyces cerevisiae GTT1-like subfamily; composed
of predominantly uncharacterized proteins with
similarity to the S. cerevisiae GST protein, GTT1, and
the Schizosaccharomyces pombe GST-III. GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins, and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. GTT1, a homodimer, exhibits GST
activity with standard substrates and associates with
the endoplasmic reticulum. Its expression is induced
after diauxic shift and remains high throughout the
stationary phase. S. pombe GST-III is implicated in the
detoxification of various metals.
Length = 123
Score = 33.0 bits (76), Expect = 0.13
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFN 185
E + +++ +L + + G L+ DI + L R ++Y N+ +
Sbjct: 61 PELKRHLDFLEDHLAKHPYFAGDELTAADIMMSFPLEAALAR---GPLLEQYPNIAAYLE 117
Query: 186 SLSAE 190
+ A
Sbjct: 118 RIEAR 122
>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones].
Length = 211
Score = 34.0 bits (78), Expect = 0.16
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186
E ++ L ++ G +I DIA+ L + L Y L W+
Sbjct: 135 EIRALLALLEALLADGPYLAGDRFTIADIALAPLLWRLALLGEEL---ADYPALKAWYER 191
Query: 187 LSA 189
+ A
Sbjct: 192 VLA 194
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 34.3 bits (80), Expect = 0.22
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 31/111 (27%)
Query: 260 GYLHIGHSKAA----LLNQYFAQRYQGQLIVRF-------DD--TNPAKESNE------- 299
Y HIGH+++ +L +Y RY G V + DD A E E
Sbjct: 35 DYAHIGHARSFVVFDVLRRYL--RYLG-YKVTYVRNITDIDDKIIKRANEEGESIKELTE 91
Query: 300 -FVDNLLKDIETLGIK---YE-TVTYTSDYFPDLMEMAENLIRQGKAYVDD 345
++ +D++ L + E T ++ P+++E+ E LI +G AY D
Sbjct: 92 RYIAAFHEDMDALNVLPPDIEPRAT---EHIPEIIELIERLIDKGHAYEAD 139
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 33.7 bits (78), Expect = 0.38
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 23/109 (21%)
Query: 256 PEPSGYLHIGHSKAA----LLNQYFAQRYQG------QLIVRFDDT--NPAKESNE---- 299
P Y HIGH++ +L +Y RY G + I DD N A+E
Sbjct: 30 PTVYDYAHIGHARTYVVFDVLRRYL--RYLGYKVTYVRNITDIDDKIINRAREEGLSIRE 87
Query: 300 ----FVDNLLKDIETLGIKYETV-TYTSDYFPDLMEMAENLIRQGKAYV 343
++ +D++ L + + +++ +++E E LI +G AYV
Sbjct: 88 VAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYV 136
>gnl|CDD|198299 cd03190, GST_C_Omega_like, C-terminal, alpha helical domain of
Class Omega-like Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Saccharomyces cerevisiae Omega-like subfamily;
composed of three Saccharomyces cerevisiae GST
omega-like (Gto) proteins, Gto1p, Gto2p (also known as
Extracellular mutant protein 4 or ECM4p), and Gto3p, as
well as similar uncharacterized proteins from fungi and
bacteria. The three Saccharomyces cerevisiae Gto
proteins are omega-class GSTs with low or no GST
activity against standard substrates, but have
glutaredoxin/thiol oxidoreductase and dehydroascorbate
reductase activity through a single cysteine residue in
the active site. Gto1p is located in the peroxisomes
while Gto2p and Gto3p are cytosolic. The gene encoding
Gto2p, called ECM4, is involved in cell surface
biosynthesis and architecture. S. cerevisiae ECM4
mutants show increased amounts of the cell wall hexose,
N-acetylglucosamine. More recently, global gene
expression analysis shows that ECM4 is upregulated
during genotoxic conditions and together with the
expression profiles of 18 other genes could potentially
differentiate between genotoxic and cytotoxic insults in
yeast.
Length = 142
Score = 31.8 bits (73), Expect = 0.59
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD---------SLRKSKKYQNLVRW 183
++K L ++ +++G L+ DI +++ L R+D +L+ + Y NL R+
Sbjct: 49 LEKRLSKQPYLLGDRLTEADIRLFTTLI----RFDPVYHQHFKCNLKTIRDYPNLWRY 102
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 32.4 bits (74), Expect = 1.1
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 22/114 (19%)
Query: 256 PEPSGYLHIGHSKAALLNQYFA--QRYQGQLIVR---FD-------------DTNPAKES 297
P PSG LH+GH + + + R +G ++ +D +PAK +
Sbjct: 38 PYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAENAAIKRGIHPAKWT 97
Query: 298 NEFVDNLLKDIETLGIKY----ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTP 347
E + N+ K ++ LG Y E T +Y+ + L +G AYV +
Sbjct: 98 YENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEAD 151
>gnl|CDD|198291 cd03182, GST_C_GTT2_like, C-terminal, alpha helical domain of
GTT2-like Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family,
Saccharomyces cerevisiae GTT2-like subfamily; composed
of predominantly uncharacterized proteins with
similarity to the Saccharomyces cerevisiae GST protein,
GTT2. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins, and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. GTT2, a homodimer, exhibits GST
activity with standard substrates. Strains with deleted
GTT2 genes are viable but exhibit increased sensitivity
to heat shock.
Length = 116
Score = 29.2 bits (66), Expect = 2.6
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 133 TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+DK L +V G SI DI + AL L ++ L RW+ ++A
Sbjct: 58 PVLDKRLAESPYVAGDRFSIADITAFVALDFAKNL--KLPVPEELTALRRWYERMAA 112
>gnl|CDD|241310 cd10574, EVH1_SPRED-like, Sprouty-related EVH1
domain-containing-like proteins EVH1 domain. The Spred
family has the following domains: an N-terminal EVH1
domain, a unique KBD (c-Kit kinase binding) domain which
that is phosphorylated by the stem cell factor receptor
c-Kit, and a C-terminal cysteine-rich SPR
(Sprouty-related) domain which is involved in membrane
localization. There are 3 Spred proteins: Spred1 which
interacts with both Ras and Raf through its SPR domain;
Spred2 which is the most abundant isoform; and Spred3
which has a non-functional KBD and maintains the
inhibitory action on Raf. Legius syndrome is caused by
heterozygous mutations in Spred1. Both EVH1 and SPR
domains are involved in the inhibition of the MAP kinase
pathway by Spred proteins. The specific function of the
Spred2 EVH1 domain is unknown and there are no known
interacting proteins to date. It is thought that its
EVH1 domain will have a fourth distinct peptide binding
mechanism within the EVH1 family. The EVH1 domains are
part of the PH domain superamily. There are 5 EVH1
subfamilies: Enables/VASP, Homer/Vesl, WASP, Dcp1, and
Spred. Ligands are known for three of the EVH1
subfamilies, all of which bind proline-rich sequences:
the Enabled/VASP family binds to FPPPP peptides, the
Homer/Vesl family binds PPxxF peptides, and the WASP
family binds LPPPEP peptides. EVH1 has a PH-like fold,
despite having minimal sequence similarity to PH or PTB
domains.
Length = 113
Score = 29.2 bits (66), Expect = 2.8
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 13/47 (27%)
Query: 377 EMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHH-RIGSK 422
E + LEC LR +D VY + P HH RIG K
Sbjct: 51 ERLRDKTVVLECTLR------------KDLVYNKVMPTFHHWRIGEK 85
>gnl|CDD|225975 COG3443, COG3443, Predicted periplasmic or secreted protein
[General function prediction only].
Length = 193
Score = 30.1 bits (68), Expect = 2.9
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 199 TATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRF---- 254
T T+ N GKPT+ K G K +KG G R FE D+ K ++F
Sbjct: 91 TVTFFKN---GKPTSGKY-AYDGYKILTYKKGNRGVRYLFECKDADSGAPKY-IQFSDHN 145
Query: 255 -APEPSGYLHI---GHSKAALLNQ 274
AP + + HI S+ ALL++
Sbjct: 146 IAPRKASHFHIFMGNDSQEALLDE 169
>gnl|CDD|181997 PRK09620, PRK09620, hypothetical protein; Provisional.
Length = 229
Score = 30.2 bits (68), Expect = 3.3
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 22/80 (27%)
Query: 607 DHADAQLISANEEITLMDWGNAIVKEISRDQDGNVTQLSG--------FLHLEGSVKNTK 658
+ DA +++A DW +V +I DQ+GNV ++G +H + + K K
Sbjct: 86 EKVDAVIMAAAGS----DW---VVDKIC-DQEGNVLDMNGKISSDIAPIIHFQKAPKVLK 137
Query: 659 LKLTWLPETNELVNLTLVGF 678
W PET LVGF
Sbjct: 138 QIKQWDPET------VLVGF 151
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 29.9 bits (68), Expect = 4.5
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 20/79 (25%)
Query: 256 PEPSGYLHIGHSKAALLNQYFAQRYQ----------------GQLIVRFDD---TNPAKE 296
P PSG LH+GH + + A RY+ G +P
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIA-RYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDW 67
Query: 297 SNEFVDNLLKDIETLGIKY 315
+ + + + ++ +G Y
Sbjct: 68 TEYNIKKMKEQLKRMGFSY 86
>gnl|CDD|198289 cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown
subfamily 2 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 2; composed of uncharacterized bacterial
proteins, with similarity to GSTs. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Length = 110
Score = 28.4 bits (64), Expect = 5.2
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSL---RKSKKYQNLVRWFNSLSA 189
+D L R+ ++ G ++ DIA+ ++ RW L R + +L RW+ LS
Sbjct: 55 LDAQLARQAYLAGDRFTLADIALGCSV----YRWLELPIERPA--LPHLERWYARLSQ 106
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 29.5 bits (67), Expect = 5.9
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 258 PSGYLHIGHSKAALLNQYFAQRYQGQ----------LIVRFDDTNPAKESNEFVDNLLKD 307
PSG LH+G+ A+ N Q + + VR D ++ + + D
Sbjct: 14 PSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDP--TEEDLRQATREVAAD 71
Query: 308 IETLGIKYETVT--YTSDYFPDLMEMA 332
+G+ E T S+ P+ E+A
Sbjct: 72 YLAVGLDPEKSTIFLQSEV-PEHAELA 97
>gnl|CDD|198305 cd03196, GST_C_5, C-terminal, alpha helical domain of an unknown
subfamily 5 of Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, unknown
subfamily 5; composed of uncharacterized bacterial
proteins with similarity to GSTs. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins, and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes. The
GST fold contains an N-terminal thioredoxin-fold domain
and a C-terminal alpha helical domain, with an active
site located in a cleft between the two domains. GSH
binds to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain.
Length = 115
Score = 28.3 bits (64), Expect = 6.0
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 139 LERRTFVVGHSLSIVDIAIW---SALAGT-GQRWDSLRKSKKYQNLVRWFNSL 187
L + ++ G S+ D AI+ A +D+ Y NL RW N
Sbjct: 57 LSQHAYLFGDRPSLADYAIFPFVRQFAHVDRDWFDAS----PYPNLRRWLNRF 105
>gnl|CDD|235382 PRK05270, PRK05270, galactose-1-phosphate uridylyltransferase;
Provisional.
Length = 493
Score = 29.8 bits (68), Expect = 6.5
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 519 LVEALIQFILEQGASKNLNLMEWDKLWTINK 549
L+E LI + ++ G + E D+++ N+
Sbjct: 6 LIEKLIDYAIQNGL-----IEELDRIYLRNR 31
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,187,409
Number of extensions: 3915820
Number of successful extensions: 3397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3314
Number of HSP's successfully gapped: 85
Length of query: 758
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 654
Effective length of database: 6,324,786
Effective search space: 4136410044
Effective search space used: 4136410044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)