RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043341
(758 letters)
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 590 bits (1523), Expect = 0.0
Identities = 146/604 (24%), Positives = 250/604 (41%), Gaps = 71/604 (11%)
Query: 146 VGHSLSIVDIAIWSALAGTGQ--RWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYV 203
V H A+ A+ R + + + + V NSLS E
Sbjct: 17 VKHRGRANPGAVMGAVMSNEPELRKMAPQVKEAVEAAVERVNSLSPE------------E 64
Query: 204 SNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLH 263
+ + + ++ +Q + + +L + G+V LRFAP PSG LH
Sbjct: 65 QQQEMERLGLEITERKQKKRKGL-------------RELAGVK-GEVVLRFAPNPSGPLH 110
Query: 264 IGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSD 323
IGH++AA+LN +A++Y G+LI+R +DT+P + E D + D+E LG++++ SD
Sbjct: 111 IGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSD 170
Query: 324 YFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSE 383
E E LI +G AYV E+ ++ + G CR+ EN++ W+EM E
Sbjct: 171 RMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKE 230
Query: 384 RGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGIT 443
G +R K D+ PN ++RD V R H R G++Y+VYP +F+ D G+T
Sbjct: 231 -G-SAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVT 288
Query: 444 HALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWD 503
H LR ++ + + LG + RL M LS + G+ GWD
Sbjct: 289 HVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWD 348
Query: 504 DPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVI 563
DPR T++ I RRG+ EA+ + ++E G + M W K++ +N+ I++ R+
Sbjct: 349 DPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAA 408
Query: 564 EDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQLISANEEITLM 623
+ V L + P P P H + G + +++ D + L+
Sbjct: 409 DP--VKLEVVGLPG-PVRVERPLHPDHPEIGNRVLELRGEVYLPGDDL----GEGPLRLI 461
Query: 624 DWGNAIVKEISRDQDGNVTQLSGFLHLEGSVKNTKLKLTWLPETNELVNLTLVGFDYLIT 683
D N I +E + + + W+P + ++ D
Sbjct: 462 DAVNVIYSGGELRYHSEG--------IEEARELGASMIHWVPAE-SALEAEVIMPDASRV 512
Query: 684 KKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
+ + +++ L+ +++QLER G+ R D + V
Sbjct: 513 R----------------------GVIEADASELEVDDVVQLERFGFARLD---SAGPGMV 547
Query: 744 VLFA 747
+A
Sbjct: 548 FYYA 551
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 422 bits (1087), Expect = e-140
Identities = 181/526 (34%), Positives = 278/526 (52%), Gaps = 29/526 (5%)
Query: 241 DLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEF 300
DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ +RFDDTNP KE E+
Sbjct: 18 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 77
Query: 301 VDNLLKDIETLGIKYET-VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD-- 357
V+++ D+E LG + V Y+SDYF L A LI +G AYVD+ EQ+++ R
Sbjct: 78 VESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLT 137
Query: 358 --GIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIP 415
G S R+ S+EEN+ L+++M AG + CLR K+DM P +RDPV YR
Sbjct: 138 QPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAE 197
Query: 416 HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYE 474
HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y + +++ + YE
Sbjct: 198 HHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYE 257
Query: 475 FSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASK 534
FSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG ++ +F G +K
Sbjct: 258 FSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTK 317
Query: 535 NLNLMEWDKLWTINKKIIDPVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAG 594
N +E L + ++ ++ PR AVI+ V L + + + + +P H G
Sbjct: 318 QDNTIEMASLESCIREDLNENAPRAMAVIDP--VKLVIENYQGEGEMVTMPNHPNKPEMG 375
Query: 595 EKATTYTKRIWIDHADAQL--------ISANEEITLMDWGNAIVKEISRDQDGNVTQLSG 646
+ ++ IWID AD + + +E+ L + + + +D +GN+T +
Sbjct: 376 SRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFC 435
Query: 647 FLHLEGSVKNT----KLK--LTWLPETNEL---VNLTLVGFDYLITKKKLEEGEDFLDVL 697
+ K+ K+K + W+ + L + L +D L + +DFL V+
Sbjct: 436 TYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRL----YDRLFSVPNPGAADDFLSVI 491
Query: 698 NPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSSKPV 743
NP + + ++++ G+ Q ER+GYF D + + KPV
Sbjct: 492 NPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPV 537
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 388 bits (998), Expect = e-123
Identities = 167/605 (27%), Positives = 246/605 (40%), Gaps = 77/605 (12%)
Query: 210 KPTAAKSKEQQGVKGDVSEKGKAGSRPSF-----EVDLPDAEIGKVRLRFAPEPSGYLHI 264
+ G P+F E DL + +V RF P+PSGY H+
Sbjct: 22 TRMTDAPRPTAGADAPARPPAAPLVAPNFITEIIERDLEAGKYPRVVTRFPPDPSGYAHL 81
Query: 265 GHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKYET-VTYTSD 323
GH A+LL+ A++Y GQ +R DDTNP E+VD++ D++ LG+ + Y SD
Sbjct: 82 GHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGEHFYYASD 141
Query: 324 YFPDLMEMAENLIRQGKAYVDDTPREQMQKER----MDGIESKCRNNSIEENMKLWKEMI 379
YF AE LIRQG AYV+ E++ + R G S R+ S+EEN+ L + M
Sbjct: 142 YFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMK 201
Query: 380 AGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAK 439
AG E LR K+D+ PN LRDPV YR PH R ++ +YP YDF P DA
Sbjct: 202 AGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAI 261
Query: 440 EGITHALRSSEYHDRNAQYYRIQEDLGVR-KVHIYEFSRLNMVYTLLSKRKLLWFVQNGK 498
EG+TH++ S E+ D A Y + E L + H YEF R + YT+ SKRKL VQ G+
Sbjct: 262 EGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTITSKRKLRELVQAGR 321
Query: 499 VDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKKIIDPVCPR 558
V GWDDPR PT++ R G+ EA+ F + G S+ ++ + ++ PR
Sbjct: 322 VSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDDLNHRAPR 381
Query: 559 HTAVIEDRRVLLT----------------LTDGPDKPFVRIIPRHKKYEGAGEKATTYTK 602
AV++ +V LT + V + + + T+
Sbjct: 382 VMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTR 441
Query: 603 RIWIDHADAQL--------ISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSV 654
++I+ D ++ + L G + D+ G VT + L G
Sbjct: 442 ELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFGTDEAGQVTHI--RATLLGED 499
Query: 655 KNTKLKLTWLPETNEL---VNLTLVGFDYLITKK-------------------------- 685
+ W+ L L +D L
Sbjct: 500 AKAAGVIHWVSAERALPAEFRL----YDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAG 555
Query: 686 --KLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPF-----TR 738
+ F+ L P + + ++ Q ER+GYF D +R
Sbjct: 556 QETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQGYFWRDPVELERVDSR 615
Query: 739 SSKPV 743
V
Sbjct: 616 EDALV 620
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A
{Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A
Length = 209
Score = 101 bits (252), Expect = 1e-24
Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 24/203 (11%)
Query: 37 MTMEIKVLSFPADSP--PLLVIAAAKLAG------ITIPTETSGSAPTFSFSNGSKLQGT 88
+ M L+ +P + AA++ I I AP + ++
Sbjct: 17 IKMPST-LTINGKAPIVAYAELIAARIVNALAPNSIAIKLVDDKKAPAAKLDDATE---- 71
Query: 89 YVLLRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEF---ENACTYVDKYLERRTFV 145
+ I N + ++ +W++ F + +D L RTF+
Sbjct: 72 -DVFNKITSKFAAIFDNG-DKEQVAKWVNLAQKELVIKNFAKLSQSLETLDSQLNLRTFI 129
Query: 146 VGH-SLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA--EYSDSLDEVTATY 202
+G S D+A W AL G S+ K+K N+ RW+ L + ++ D ++ +
Sbjct: 130 LGGLKYSAADVACWGALRSNGM-CGSIIKNKVDVNVSRWYTLLEMDPIFGEAHDFLSKSL 188
Query: 203 VSNRGLGKPTAAKSKEQQGVKGD 225
+ + K KE +
Sbjct: 189 LELK--KSANVGKKKETHKANFE 209
>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein
biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear
protein, RNA-binding protein; HET: MSE; 2.0A {Homo
sapiens}
Length = 174
Score = 99.0 bits (247), Expect = 4e-24
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 55 VIAAAKLAGITIPTETS----GSAPTFSFSNGSKLQGTYVLLRYIGRV---GNFYGQNAY 107
+ K G++ + S P +NG L G + ++ + G A
Sbjct: 7 LSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLMGLTTIAAHLVKQANKEYLLGSTAE 66
Query: 108 EAGEIDEWLDYTPVFSSGSEFEN----ACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG 163
E + +WL+Y G +N ++ YLE + ++ G++ ++ DI ++ L
Sbjct: 67 EKAMVQQWLEYRVTQVDGHSSKNDIHTLLMDLNSYLEDKVYLTGYNFTLADILLYYGLHR 126
Query: 164 TGQRWDSLRKSKKYQNLVRWFNSLSA--EYSDSLDEVT 199
+++ +KY N+ RWF + L V
Sbjct: 127 FIVDLT-VQEKEKYLNVSRWFCHIQHYPGIRQHLSSVV 163
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 98.0 bits (245), Expect = 1e-21
Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 48/228 (21%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RF P P+G H+G + AL N +A+ G + R +DT+ ++S E LL +
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDAL 65
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTP------REQMQ 352
LG+ + E Y P ++ ++ L+ G+AY TP
Sbjct: 66 RWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAG 125
Query: 353 KERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD--------P 399
+ G ++ R+ + + E G + +R L D
Sbjct: 126 RNPKLGYDNFDRHLTDAQRAAYLAE-------GRQPVVRLRMPDDDLAWNDLVRGPVTFA 178
Query: 400 NKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
S+ D R + G P Y P DA ITH LR
Sbjct: 179 AGSVPDFALTRAS-------GD-----PLYTLVNPCDDALMKITHVLR 214
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 97.2 bits (243), Expect = 2e-21
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
V R AP P+G H+G + AL N +A+R G+ IVR +DT+ A+ + +L ++
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 310 TLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPRE-QMQKERMDG 358
LG+ Y E + P L + AE L+++G AY +TP E + ++ G
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD--------PNKSLR 404
+ + RN EE + + G +R G +++D N+ +
Sbjct: 122 YDGRARNIPPEEAEERARR-------GEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP 174
Query: 405 DPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
D V + + G YPTY A D G+T +R+ E+
Sbjct: 175 DVVLLKSD-------G-----YPTYHLANVVDDHLMGVTDVIRAEEW 209
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 96.5 bits (241), Expect = 3e-21
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 43/237 (18%)
Query: 234 SRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNP 293
+ P + VR RFAP P+G++H+G+ ++AL FA++ +G ++R +DT+
Sbjct: 10 GTLEAQTQGPGSMTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDV 69
Query: 294 AKESNEFVDNLLKDIETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY-VDDTP---- 347
+ S E VD +L+ + LG+ Y E Y E+ + +G Y +
Sbjct: 70 ERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELD 129
Query: 348 --RE-QMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD 398
RE Q + R + + G+ LR G + D
Sbjct: 130 ALRERQRAAGEKPRYDGTWRPEPGKV--------LPEPPAGVAPVLRFRNPLTGTVAWDD 181
Query: 399 --------PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
N+ L D V R + G+ P Y+F D GITH +R
Sbjct: 182 AVKGRVEISNEELDDLVVARPD-------GT-----PMYNFCVVVDDLDMGITHVIR 226
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 96.5 bits (241), Expect = 4e-21
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
VR+R AP P+G LHIG ++ A+ N +A+ G+ I+R +DT+ + E+ +N+L+ ++
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 310 TLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAY--------VDDTPREQMQKERMDGIE 360
LG+ + E + SD + + L+ +G AY ++ EQ K + +
Sbjct: 62 WLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYD 121
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLR------GKLDMQD--------PNKSLR-D 405
++ R+ + EE G +R +++ QD L D
Sbjct: 122 NRHRHLTPEEQAAFEAA-------GRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGD 174
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
V R P IG P Y+ D GIT +R
Sbjct: 175 MVIARAAPRG--EIGY-----PLYNLVVVVDDIAMGITDVIR 209
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 93.4 bits (233), Expect = 5e-21
Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 23/223 (10%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
+ RFAP PSG LH G AAL + A+ QG+ +VR +D +P +E + +L+ +
Sbjct: 5 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 64
Query: 309 ETLGIKY-ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERM--DGIESKCRN 365
E G+ + V + S E L QG +Y R ++Q DG CR
Sbjct: 65 EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDG---HCRV 121
Query: 366 NSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKV 425
+ + LRG + D + D + +R R G
Sbjct: 122 LHHGPDNAAVRIRQQHPVTQFTDQLRGIIH-ADEKLAREDFIIHR-------RDG----- 168
Query: 426 YPTYDFACPFV--DAKEGITHALRSSEYHDRNAQYYRIQEDLG 466
Y+ A V D +G+T +R ++ + + + + G
Sbjct: 169 LFAYNLAV--VVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG 209
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 91.1 bits (227), Expect = 2e-19
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 47/229 (20%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RFAP P+G+LH+G ++ AL N FA++ +G+ I+R +DT+ + E+ + L++ +
Sbjct: 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY--------VDDTPREQM 351
LG+ + E D+ P ++ E AE L+++GKAY +++ + +
Sbjct: 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLL 132
Query: 352 QKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD-------- 398
+ + + + E+GL + + D
Sbjct: 133 SEGKAPHYSQEMFEKFDTP-----ERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVF 187
Query: 399 PNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALR 447
++ D V R N G PTY+FAC D ITH +R
Sbjct: 188 KTGAIGDFVIMRSN-------G-----LPTYNFACVVDDMLMEITHVIR 224
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 91.5 bits (228), Expect = 2e-19
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RFAP P+G+LH+G ++ AL N FA++ G+ I+R +DT+ + S E+ +L+ +
Sbjct: 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 188
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPREQMQKERMDG 358
G+ + E D+ P ++ E AE L+ +AY V +
Sbjct: 189 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS------- 241
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD--------PNKSLRD 405
K + E + E+G ++ GK +D N +L D
Sbjct: 242 ---KELFTTYEYPHEY-------KEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLED 291
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
+ + N G +PTY+FA D I+H R ++
Sbjct: 292 FIIMKSN-------G-----FPTYNFAVVVDDHLMRISHVFRGEDH 325
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 91.1 bits (227), Expect = 2e-19
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
VR+RFAP P+G+LH+G ++ AL N FA++ G+ I+R +DT+ + S E+ +L+ +
Sbjct: 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 84
Query: 309 ETLGIKY-ETVTYTSDYFP-------DL-MEMAENLIRQGKAY-VDDTPREQMQKERMDG 358
G+ + E D+ P ++ E AE L+ +AY V +
Sbjct: 85 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPS------- 137
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLR-----GKLDMQD--------PNKSLRD 405
K + E + E+G ++ GK +D N +L D
Sbjct: 138 ---KELFTTYEYPHEY-------KEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLED 187
Query: 406 PVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEY 451
+ + N G +PTY+FA D I+H R ++
Sbjct: 188 FIIMKSN-------G-----FPTYNFAVVVDDHLMRISHVFRGEDH 221
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 3e-09
Identities = 78/571 (13%), Positives = 166/571 (29%), Gaps = 171/571 (29%)
Query: 82 GSKLQGTYVLLRYIGRVGNFYGQNAYEA--GEIDEWLDYTPVFSSGSEFENACTYVDKYL 139
+ GT L + + + E+ ++Y + S +
Sbjct: 58 KDAVSGTLRLFWTLLS----KQEEMVQKFVEEVLR-INYKFLMSPIKT-----EQRQPSM 107
Query: 140 ERRTFVVGHSLSIVDIAIWSALAGTGQRWD--SLRKSKKYQNLVRWFNSLSAEYSDSLDE 197
R ++ L Q + ++ + + Y L + L
Sbjct: 108 MTRMYIEQRD----------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA------- 150
Query: 198 VTATYVSNRGL---GKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEV--------DLPDAE 246
V G+ GK A DV K + F++ + P+
Sbjct: 151 ---KNVLIDGVLGSGKTWVA---------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 247 IGKV-RLRFAPEPSG----------YLHIGHSKAALLNQYFAQRYQGQLIV--------- 286
+ + +L + +P+ L I +A L ++ Y+ L+V
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 287 --------------R----FDDTNPAKESNEFVDNL---LKDIETLGI--KYETVTYTS- 322
R D + A ++ +D+ L E + KY
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 323 -----DYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNN----------- 366
P + + IR G A D+ + + +++ I N
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 367 --SI-EENMK--------LWKEMIAGSERGL--ECCLRGKLDMQDPNKSLRDPVYYR--C 411
S+ + +W ++I + + ++ Q ++ P Y
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 412 NPIP-----HHRIGSKY---KVYPTYDFACPFVDAKEG-----ITHALRSSEYHDRNAQY 458
+ H I Y K + + D P++D I H L++ E+ +R +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLF 493
Query: 459 YRIQEDLG-----VRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGI 513
+ D +R + +++ TL + ++ + +DP++
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYE----- 542
Query: 514 VRRGLLVEALIQFILEQGA----SKNLNLME 540
LV A++ F+ + SK +L+
Sbjct: 543 ----RLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 53.3 bits (127), Expect = 3e-07
Identities = 90/553 (16%), Positives = 156/553 (28%), Gaps = 181/553 (32%)
Query: 307 DIETLGIKYETVTYTSDYFPDLME-MAENLIRQGKAYVDDTPREQMQKERMDGI-ESKCR 364
D ET +Y Y D + +N + V D P+ + KE +D I SK
Sbjct: 8 DFETGEHQY---QY-KDILSVFEDAFVDNFDCK---DVQDMPKSILSKEEIDHIIMSK-- 58
Query: 365 NNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKS-LRDPVYYRCN-PIP------- 415
+++ ++L+ +++ E ++ + L N L P+ P
Sbjct: 59 -DAVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 416 -HHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK----- 469
R+ + +V+ Y V + LR + R A+ I LG K
Sbjct: 115 QRDRLYNDNQVFAKY-----NVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 470 -------------VHIY--EFSRLNMVYTLLSKRKLLW--FVQNG--KVDGWDDPRFPTV 510
I+ N T+L + L N + D + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 511 QGIVR-RGLLVE-----ALIQFILEQGASKNLNLMEWDKLWTINKKIIDPV---CPRHTA 561
R LL L+ +L + N K + C
Sbjct: 229 SIQAELRRLLKSKPYENCLL--VL-------------LNVQ--NAKAWNAFNLSC----- 266
Query: 562 VIEDRRVLLT-----LTDGPDKPFVRIIPRHKKYEGAGEKATTYTKR-------IWIDHA 609
++LLT +TD + + + T T ++D
Sbjct: 267 -----KILLTTRFKQVTD-------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 610 DAQL--------------ISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLEGSV- 654
L I+ + L W N K ++ D+ + + S LE +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESS-LNVLEPAEY 371
Query: 655 -----------KNTK-----LKLTWL------PE--TNELVNLTLVGFD----------- 679
+ L L W N+L +LV
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 680 YLITKKKLEEGED----FLDVLNPCTRFETAAIGDSN------------MRNLKRGEILQ 723
YL K KLE +D N F++ + ++N++ E +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 724 LERKGYFRCDVPF 736
L R + D F
Sbjct: 492 LFRMVFL--DFRF 502
Score = 44.1 bits (103), Expect = 2e-04
Identities = 45/282 (15%), Positives = 75/282 (26%), Gaps = 76/282 (26%)
Query: 112 IDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSI----VDI------AIWSAL 161
D W + E++ ++ R+ F LS+ I IW +
Sbjct: 344 WDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDV 399
Query: 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQG 221
+ + K KY + + + E+ + L + +
Sbjct: 400 IKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 222 VKGDVSEKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYL--HIG-HSKAALLNQYFAQ 278
D DL P Y HIG H K +
Sbjct: 459 FDSD---------------DLIP-----------PYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 279 --------RYQGQLIVRFDDTN---PAKESNEFVD----------------NLLKDIETL 311
R+ Q I R D T N L+ I
Sbjct: 493 FRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 312 GIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQK 353
K E S Y DL+ +A L+ + +A ++ + Q+Q+
Sbjct: 552 LPKIEENLICSKY-TDLLRIA--LMAEDEAIFEEAHK-QVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 5e-09
Identities = 111/639 (17%), Positives = 191/639 (29%), Gaps = 241/639 (37%)
Query: 69 ETSGSAPTFSFSNGSKLQGTYV----------------------LLRYIGRVGNFYGQNA 106
E PT SF S+LQ + + +++G V + +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS- 75
Query: 107 YEAGEIDEWLDYTPVFSSGSEFENAC-------TYVDKYLERRTFVVGHSLSIV------ 153
+ G+ D+ L+ +EFEN K L+ + + ++
Sbjct: 76 -KVGQFDQVLNL--CL---TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 154 --------DIAIWSAL-----AGT--------GQ-----RWDSLRK-SKKYQNLVRWFNS 186
D SAL G GQ ++ LR + Y LV
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 187 LSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSE-KGKAGSRPSFE------ 239
SAE +L E+ T A+ QG+ ++ E + P +
Sbjct: 190 FSAE---TLSELIRT---------TLDAEKVFTQGL--NILEWLENPSNTPDKDYLLSIP 235
Query: 240 VDLPDAEIGKVRL---RFAPEPSGYLH----------IGHSK---AALLNQYFAQRYQGQ 283
+ P IG ++L + G+ GHS+ A+ A+
Sbjct: 236 ISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA---IAE----- 285
Query: 284 LIVRFDDTNPAKESNEFVDNLLKDIETL---GIKYETVTYTSDYFPDLM---EMAENLIR 337
F ++ K I L G++ + +P+ + E+ +
Sbjct: 286 ----------TDSWESFFVSVRKAITVLFFIGVR------CYEAYPNTSLPPSILEDSLE 329
Query: 338 QGKAY------VDDTPREQMQKERMDGIESKCRNNSIEENMKLW-------KEM-IAG-- 381
+ + + +EQ+Q + N+ + ++ K + ++G
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDY----VNK--TNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 382 -SERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDF---ACPFVD 437
S GL LR ++S R IP S+ K+ + F A PF
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQS-R---------IPF----SERKLKFSNRFLPVASPF-- 427
Query: 438 AKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSRLNM-VY-TLLSKRKLLWFVQ 495
H S + I +DL V + + VY T
Sbjct: 428 ------H----SHLLVPASD--LINKDLVKNNVSF-NAKDIQIPVYDT------------ 462
Query: 496 NGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWTINKK---II 552
DG D R V G + E ++ I+ + W+ T K I+
Sbjct: 463 ---FDG-SDLR-------VLSGSISERIVDCII----RLPVK---WET--TTQFKATHIL 502
Query: 553 D--P-VCPRH---TAVIEDR---RVLL--TLTDGPDKPF 580
D P T +D RV++ TL PD +
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 45.8 bits (108), Expect = 5e-05
Identities = 45/193 (23%), Positives = 67/193 (34%), Gaps = 63/193 (32%)
Query: 26 QQPALVL--LALVMTMEIKVLSFPADSPPLLVIA-------AAKLAGITIPTETSGSAPT 76
QPAL L A ++ K L PAD+ A AA LA + +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGL-IPADA----TFAGHSLGEYAA-LASL------ADV--- 1776
Query: 77 FSFSNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLDY-----TP--VFSSGSEFE 129
S + ++ V R G Q A E+ +Y P V +S S +
Sbjct: 1777 MSIESLVEV----VFYR--GM----TMQVAVPRDELGR-SNYGMIAINPGRVAASFS--Q 1823
Query: 130 NACTYVDKYLERRTFVVGHSLSIVD-------IAIWSALAGTGQRWDSLR---KSKKYQN 179
A YV + + +RT G + IV+ AG + D++ K Q
Sbjct: 1824 EALQYVVERVGKRT---GWLVEIVNYNVENQQYVA----AGDLRALDTVTNVLNFIKLQK 1876
Query: 180 --LVRWFNSLSAE 190
++ SLS E
Sbjct: 1877 IDIIELQKSLSLE 1889
Score = 40.8 bits (95), Expect = 0.002
Identities = 91/634 (14%), Positives = 171/634 (26%), Gaps = 239/634 (37%)
Query: 142 RTFVVGH-SL--SI-VDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAEYSDSL-- 195
R + H SL + V A + + Q + FN + E ++
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIAS---QLQEQ-------------FNKILPEPTEGFAA 50
Query: 196 -DEVTAT---------YVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSRPSFEVD-LPD 244
DE T YVS S + G + FE L
Sbjct: 51 DDEPTTPAELVGKFLGYVS-----------SLVEPSKVGQFDQVLNLCLT-EFENCYLEG 98
Query: 245 AEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNL 304
+I + + E L L+ Y R + + S L
Sbjct: 99 NDIHALAAKLLQENDTTLV---KTKELIKNYITARIMAK-----RPFDKKSNSA-----L 145
Query: 305 LKDIETLGIKYETVTY--------TSDYFPDLME-------MAENLIRQGKAYVDDTPRE 349
+ + + T DYF +L + + +LI+ + + R
Sbjct: 146 FRAVGEGNAQ----LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 350 QMQKERM--DGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPV 407
+ E++ G+ N+ W +++P+ + D
Sbjct: 202 TLDAEKVFTQGL-----------NILEW--------------------LENPS-NTPDKD 229
Query: 408 YYRCNPI--PHHRIGSKYKVYPTYDFACPFVDAKE-GITHA-LRSS-------------- 449
Y PI P IG A V AK G T LRS
Sbjct: 230 YLLSIPISCP--LIG-------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 450 ----------EYHDRNAQYYRIQEDLGVRKVHIYEFSRLNMVYTLLSKRKLLWFVQNGKV 499
+ + + +GVR + + ++ ++L ++N
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVR-CYEA-YPNTSLPPSILED-----SLENN-- 331
Query: 500 DGWDDPRFPT----VQGIVRRGLLVEALIQFILEQGASKNLNLMEWDKLWT--INKKIID 553
+G P+ + L E + ++ N +L ++ +N
Sbjct: 332 EG-----VPSPMLSI-----SNLTQEQVQDYV----NKTNSHLPAGKQVEISLVNG---- 373
Query: 554 PVCPRHTAVI----ED-RRVLLTL-----TDGPD---------KP-----FVRI-IPRHK 588
++ V+ + + LTL G D K F+ + P H
Sbjct: 374 ---AKN-LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 589 KY-EGAGEKATTYTKRIWI---------------DHADAQLISAN------EEITLM--D 624
A + + + D +D +++S + + I +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 625 WGNAIVKEISRDQD---GNVTQLSGFLH--LEGS 653
W + + D G + L H +G+
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 38.9 bits (90), Expect = 0.008
Identities = 58/369 (15%), Positives = 100/369 (27%), Gaps = 141/369 (38%)
Query: 9 HHRHTRPATRRATTSSLQQPALVLLALVMTME---------IKVL---------SFPADS 50
R + AT S V +A + E I VL ++P S
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 51 PPLLVIAAAKLAGITIPTETSGSAPTFSFSNGSKLQGTYVLLRYIGRVGNFYGQNAY--E 108
P ++ + +P+ P S SN ++ Q + Y+ + N++
Sbjct: 319 LPPSILEDSLENNEGVPS------PMLSISNLTQEQ----VQDYVNKT------NSHLPA 362
Query: 109 AGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVV-GHSLSIVDIAIWSALAGTGQR 167
++ + N + VV G S L G
Sbjct: 363 GKQV-----EISLV-------NG---------AKNLVVSGPPQS---------LYGLNLT 392
Query: 168 WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVS 227
LRK+K A +Q +
Sbjct: 393 ---LRKAK-------------------------------------APSGLDQSRIPFS-E 411
Query: 228 EKGKAGSRPSFEVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRY----QGQ 283
K K +R F LP + +P S L + L+N+ +
Sbjct: 412 RKLKFSNR--F---LP---V------ASPFHSHLL---VPASDLINKDLVKNNVSFNAKD 454
Query: 284 LIV----RFDDTNPAKESNEFVDNLLKDIETLGIKYETVTYTS-----DYFPDLMEMAEN 334
+ + FD ++ S + ++ I L +K+ET T D+ P
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 335 L---IRQGK 340
L + G
Sbjct: 515 LTHRNKDGT 523
Score = 34.6 bits (79), Expect = 0.16
Identities = 68/426 (15%), Positives = 123/426 (28%), Gaps = 174/426 (40%)
Query: 446 LRSSEYHDRNAQYYRIQEDLGVRKVHI---YEFSR--LNMVYTLLSKRKLLWFVQNGKVD 500
L ++ H A+ + + V+ + Y +R + S L V G
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA- 154
Query: 501 GWDDPRFPTV---QGIVR------RGL------LVEALIQFI---LEQGA---------- 532
+ + QG R L LV LI+F L +
Sbjct: 155 -----QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 533 SKNLNLMEW----------DKLWTINKKIIDPV-CPRHTAVIEDRRVLLTLTDGPDKPFV 581
++ LN++EW D L +I P+ CP L+ +
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSI------PISCP-----------LIGVIQ-----LA 247
Query: 582 RII---------PRHKKYEGAGEKATTYTKRI-----------WIDHADAQLISANEEIT 621
+ P + G AT +++ + W + + A IT
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKG--ATGHSQGLVTAVAIAETDSW-ESFFVSVRKA---IT 301
Query: 622 LMDW-G-------------NAIVKEISRDQDG------NVTQLSGFLHLEGSVK--NTKL 659
++ + G +I+++ + +G +++ L+ ++ V N+ L
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHL 360
Query: 660 KLTWLPETNE----LVN-----------LTLVGFDYLITKKKLEEGED------------ 692
P + LVN +L G + + K K G D
Sbjct: 361 -----PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 693 ----FLDVLNPCTRFETAAIGDSNMRNLKRGEILQLERKGYFRCDVPFTRSS--KPVVLF 746
FL V +P F + + L + +V F PV +
Sbjct: 416 FSNRFLPVASP---FHS-----HLLVPASDLINKDLVKN-----NVSFNAKDIQIPV--Y 460
Query: 747 AIPDGR 752
DG
Sbjct: 461 DTFDGS 466
>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis,
GST-like, translation; 3.00A {Saccharomyces cerevisiae}
SCOP: a.45.1.1 c.47.1.5
Length = 219
Score = 51.7 bits (124), Expect = 2e-07
Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 33/151 (21%)
Query: 72 GSAPTFSFSNGSKLQGTYVLLRYIGRVGNF---------YGQNAYEAGEIDEWLDYT--- 119
P F G KL + Y+ ++ + +I W
Sbjct: 47 KKVPAFVGPKGYKLTEAMAINYYLVKLSQDDKMKTQLLGADDDLNAQAQIIRWQSLANSD 106
Query: 120 ---------------------PVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIW 158
V S+ + + L+ T++ ++S+ D+
Sbjct: 107 LCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATENISLADLVAA 166
Query: 159 SALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
S + ++ +VRWFN++ A
Sbjct: 167 SIFTRYFESLFGTEWRAQHPAIVRWFNTVRA 197
>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST;
HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A*
3f6f_A 3gh6_A* 1jlv_A*
Length = 209
Score = 51.0 bits (123), Expect = 2e-07
Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 96 GRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGS--------EFENACTY 134
G+ + Y + + I++ L Y P + + + E A +
Sbjct: 78 GKTDSLYPKCPKKRAVINQRLYFDMGTLYQSFANYYYPQVFAKAPADPEAFKKIEAAFEF 137
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLR-KSKKYQNLVRWFNSLSAE 190
++ +LE + + G SL++ DIA+ + ++ ++ + + KY N+ RW+ +
Sbjct: 138 LNTFLEGQDYAAGDSLTVADIALVATVS----TFEVAKFEISKYANVNRWYENAKKV 190
>4exj_A Uncharacterized protein; transferase-like protein, transcription
regulation, transfer structural genomics; 1.64A
{Lodderomyces elongisporus nrrl yb-4239}
Length = 238
Score = 51.6 bits (124), Expect = 3e-07
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 17/133 (12%)
Query: 69 ETSGSAPTFSFSNGSKLQGTYVLLRYI----GRVGNFYGQNA---YEAGEIDEWLD-YTP 120
+T F +S + + + + + A Y+ G IDE + Y
Sbjct: 77 DTYDKEHKFFYSLKQDPKLYWEQNELLFYQATQFQSQTLTIANANYQNGHIDENIAQYV- 135
Query: 121 VFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIW----SALAGTGQRWDSLRKSKK 176
S FE +++ L R + VG +IVDIA + +
Sbjct: 136 ----LSSFEKVFAFMETKLSGRDWFVGDKFTIVDIAFLVGEHRRRERLHNSPIWIDLKEN 191
Query: 177 YQNLVRWFNSLSA 189
+ N+ +WF A
Sbjct: 192 FPNVEKWFQRAIA 204
>2cvd_A Glutathione-requiring prostaglandin D synthase;
glutathione-S-transferase, isomerase; HET: GSH HQL;
1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB:
1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A*
2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*
Length = 198
Score = 48.5 bits (116), Expect = 1e-06
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 20/101 (19%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
+G L + + RY+ + + G E +D +D + E
Sbjct: 56 DGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMF 115
Query: 133 ------------TYVDKYLERRTFVVGHSLSIVDIAIWSAL 161
+D YL R +++G S++ D
Sbjct: 116 NELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICS 156
>4g9h_A Glutathione S-transferase; GST, enzyme function initiative,
structural genomics; HET: GSH; 2.10A {Yersinia pestis}
Length = 211
Score = 48.0 bits (115), Expect = 3e-06
Identities = 14/124 (11%), Positives = 39/124 (31%), Gaps = 32/124 (25%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EF 128
++Y+ EWL++ +P+F+ +
Sbjct: 73 VQYLADKVPDRHLIAPSGTLSRYHAIEWLNFIATELHKGFSPLFNPNTPDEYKTIVRERL 132
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL---AGTGQRWDSLRKSKKYQNLVRWFN 185
+ +YVD L +++G S+ D +++ + + +L ++
Sbjct: 133 DKQFSYVDSVLAEHDYLLGKKFSVADAYLFTVSRWANALNLQIK------ERSHLDQYMA 186
Query: 186 SLSA 189
++
Sbjct: 187 RVAE 190
>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor
complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP:
a.45.1.1 c.47.1.5
Length = 209
Score = 47.9 bits (115), Expect = 3e-06
Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 26/117 (22%)
Query: 96 GRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGS--------EFENACTY 134
G+ Y ++ + +++ L + P + + ++A +
Sbjct: 77 GKDDKLYPKDPQKRAVVNQRLYFDMGTLYQRFADYHYPQIFAKQPANPENEKKMKDAVGF 136
Query: 135 VDKYLERRTFVVGHSLSIVDIAIWSALAGT-GQRWDSLRKSKKYQNLVRWFNSLSAE 190
++ +LE + + G+ L+I D+++ + +A +D Y N+ WF A
Sbjct: 137 LNTFLEGQEYAAGNDLTIADLSLAATIATYEVAGFD----FAPYPNVAAWFARCKAN 189
>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione
transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis
elegans}
Length = 207
Score = 47.3 bits (113), Expect = 4e-06
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G KL ++ + R++ R G+ A+E +++ D Y + +
Sbjct: 59 DGKKLAQSHAIARFLAREFKLNGKTAWEEAQVNSLADQYKDYSSEARPYFYAVMGFGPGD 118
Query: 128 FENAC------------TYVDKYLER--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK 173
E ++ +L+ F+VG SL+ +D+AI A +
Sbjct: 119 VETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQHSADLIAKGGDF-- 176
Query: 174 SKKYQNLVRWFNSLSA 189
K+ L + A
Sbjct: 177 -SKFPELKAHAEKIQA 191
>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase,
detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles
dirus} SCOP: a.45.1.1 c.47.1.5
Length = 210
Score = 47.6 bits (114), Expect = 4e-06
Identities = 12/116 (10%), Positives = 37/116 (31%), Gaps = 25/116 (21%)
Query: 96 GRVGNFYGQNAYEAGEIDEWLDYT-------------PVFSSGS-------EFENACTYV 135
+ Y ++ +++ L + V + + A +
Sbjct: 76 AKDDTLYPKDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLL 135
Query: 136 DKYLERRTFVVGHSLSIVDIAIWSALAGT-GQRWDSLRKSKKYQNLVRWFNSLSAE 190
++++ R + L++ DI + + + D + + ++ W + AE
Sbjct: 136 EQFVTERAYAAADHLTVADICLLGTVTALNWLKHD----LEPFPHIRAWLERVRAE 187
>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A
{Haemonchus contortus}
Length = 204
Score = 47.0 bits (112), Expect = 6e-06
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 27/108 (25%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G +L + ++RY+ R + G++A+E +D D P F
Sbjct: 57 DGKQLPQSVAIVRYLARKFGYAGKSAWEEAVVDSIADQFKDFLNEVRPYFKVLLGMDQGD 116
Query: 128 --------FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSAL 161
FE A + + ++VG SL+ D+ +
Sbjct: 117 LKALEKDVFEPARQKFFTIVTKILKENKTGYLVGDSLTFADLYVAEMG 164
>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione
disulfide, disulfide bond oxidoreductase; HET: GDS;
2.30A {Escherichia coli}
Length = 215
Score = 46.8 bits (112), Expect = 7e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIW---SALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+K LE ++ G + SI DIA W +A Y + W + +
Sbjct: 145 NKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDLAM------YPAVKNWHERIRS 195
>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH,
mosquito, detoxification, xenobiotics; HET: GTS; 2.50A
{Anopheles cracens} SCOP: a.45.1.1 c.47.1.5
Length = 218
Score = 46.8 bits (112), Expect = 8e-06
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 30/125 (24%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSEF------ 128
L Y+ G+ N Y ++ +D+ L Y P G+
Sbjct: 71 LSYLVSAYGKDENLYPKDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKA 130
Query: 129 --ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG-TGQRWDSLRKSKKYQNLVRWFN 185
A + + L++ + + +I DIA+ ++ ++D Y + W
Sbjct: 131 KLAEALGWFEAMLKQYQWSAANHFTIADIALCVTVSQIEAFQFD----LHPYPRVRAWLL 186
Query: 186 SLSAE 190
E
Sbjct: 187 KCKDE 191
>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase,
transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae}
PDB: 3erf_A* 3erg_A*
Length = 233
Score = 46.6 bits (111), Expect = 9e-06
Identities = 32/218 (14%), Positives = 55/218 (25%), Gaps = 61/218 (27%)
Query: 28 PALVLLALVMTMEIKVLSFPADSPPLLVIAAAKLAGITIPTET----------------- 70
+ M ++ + PA P V A + +
Sbjct: 6 FLIYNGGEKMKQKMIIYDTPAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLA 65
Query: 71 ---SGSAPTFSFSNGSKLQGTYVLLRYIGRV---GNFYGQNAYEAGEIDEWLDY------ 118
SG+ P +G+ + + YI + G+ E G I
Sbjct: 66 KNYSGTVPVLELDDGTLIAECTAITEYIDALDGTPTLTGKTPLEKGVIHMMNKRAELELL 125
Query: 119 ----------TPVFSSGSEF--------------ENACTYVDKYLERRTFVVGHSLSIVD 154
TP E + Y D L R +V G S S+ D
Sbjct: 126 DPVSVYFHHATPGLGPEVELYQNKEWGLRQRDKALHGMHYFDTVLRERPYVAGDSFSMAD 185
Query: 155 IAIWSALA---GTGQRWDSLRKSKKYQNLVRWFNSLSA 189
I + + L + + + L W+ +
Sbjct: 186 ITVIAGLIFAAIVKLQVPE-----ECEALRAWYKRMQQ 218
>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator
americanus}
Length = 206
Score = 46.2 bits (110), Expect = 1e-05
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 27/108 (25%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G +L + + RY+ R F G++ ++ +D D YT + +
Sbjct: 57 DGKQLAQSLAICRYLARQFGFAGKSTFDEAVVDSLADQYSDYRVEIKSFFYTVIGMREGD 116
Query: 128 FENAC------------TYVDKYLERRT--FVVGHSLSIVDIAIWSAL 161
E ++ K+L++ F+VG SL+ VD+ +
Sbjct: 117 VEQLKKEVLLPARDKFFGFITKFLKKSPSGFLVGDSLTWVDLLVSEHN 164
>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm,
polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A
1gul_A*
Length = 222
Score = 46.3 bits (110), Expect = 1e-05
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD----------YTPVFSSGSEFEN 130
+G KL T +L YI N +G+N E ID +++ P + +
Sbjct: 61 DGMKLVQTRSILHYIADKHNLFGKNLKERTLIDMYVEGTLDLLELLIMHPFLKPDDQQKE 120
Query: 131 ACTYVDKYLER-------------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
K + R ++F+VG+ LS+ D+ + + ++ ++ +
Sbjct: 121 VVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQLSLADVILLQTILALEEKIPNI--LSAF 178
Query: 178 QNLVRWFNSLSA 189
L + LS
Sbjct: 179 PFLQEYTVKLSN 190
>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP:
a.45.1.1 c.47.1.5 PDB: 1a0f_A*
Length = 201
Score = 46.1 bits (110), Expect = 1e-05
Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 32/124 (25%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EF 128
++Y+ N+ + EWL+Y TP+F + +
Sbjct: 70 MQYLADSVPDRQLLAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQL 129
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL---AGTGQRWDSLRKSKKYQNLVRWFN 185
E YV++ L+ ++ G +I D +++ L + +++ +
Sbjct: 130 EKKLQYVNEALKDEHWICGQRFTIADAYLFTVLRWAYAVKLNLE------GLEHIAAFMQ 183
Query: 186 SLSA 189
++
Sbjct: 184 RMAE 187
>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A
{Bombyx mori}
Length = 216
Score = 45.7 bits (109), Expect = 2e-05
Identities = 17/125 (13%), Positives = 47/125 (37%), Gaps = 31/125 (24%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDYT-------------PVFSSGS-------- 126
Y+ G+ +Y ++ + +++ L + P+ G
Sbjct: 72 ACYLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIKQSLK 131
Query: 127 -EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAG-TGQRWDSLRKSKKYQNLVRWF 184
+ + ++++++LE+ +V +I D +I+++++ WD + N+ RW
Sbjct: 132 DDLNSTLSFLNQFLEKTKWVAADHPTIADTSIYASMSSILAVGWD----ISSFPNIQRWI 187
Query: 185 NSLSA 189
Sbjct: 188 KDCLL 192
>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating,
A putative oxidoreduct; HET: GSH; 2.50A {Proteus
mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*
Length = 203
Score = 45.3 bits (108), Expect = 2e-05
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 26/121 (21%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EF 128
++Y+ A E EWL++ +P+FSS + +
Sbjct: 70 VQYLADLKPDRNLIAPPKALERYHQIEWLNFLASEVHKGYSPLFSSDTPESYLPVVKNKL 129
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLS 188
++ Y++ L ++ V G ++ D +++ L +L + ++
Sbjct: 130 KSKFVYINDVLSKQKCVCGDHFTVADAYLFTLSQWAPHVALDL---TDLSHLQDYLARIA 186
Query: 189 A 189
Sbjct: 187 Q 187
>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A
{Necator americanus}
Length = 206
Score = 45.1 bits (107), Expect = 2e-05
Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 29/136 (21%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD------------YTPVFSSGSE- 127
+G +L ++ + RY+ R F G+ +E +D D V
Sbjct: 57 DGKQLAQSFAIARYLSRKFGFAGKTPFEEALVDSVADQYKDYINEIRPYLRVVAGVDQGD 116
Query: 128 --------FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK 173
A ++++ ++VG S++ D+ + +G ++ S+
Sbjct: 117 PEKLFKELLLPAREKFFGFMKKFLEKSKSGYLVGDSVTYADLCLAEHTSGIAAKFPSI-- 174
Query: 174 SKKYQNLVRWFNSLSA 189
+ + + +
Sbjct: 175 YDGFPEIKAHAEKVRS 190
>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification,
transferase-transfera inhibitor complex; HET: GGL CYW;
2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*
Length = 209
Score = 44.9 bits (107), Expect = 3e-05
Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 38/132 (28%)
Query: 92 LRYIGRV---GNFYGQNAYEAGEIDEWLDY------------------TPVFS------- 123
+Y R N EA +D W++ +P+
Sbjct: 71 CKYAARKNKPELLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKV 130
Query: 124 ---SGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSK---KY 177
+ + + + L + ++ G LS+ D+ S + + Y
Sbjct: 131 VDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTL----CLFATPYASVLDAY 186
Query: 178 QNLVRWFNSLSA 189
++ W++ L
Sbjct: 187 PHVKAWWSGLME 198
>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX;
2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5
PDB: 1bx9_A*
Length = 211
Score = 44.5 bits (106), Expect = 4e-05
Identities = 5/56 (8%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 134 YVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+ L+ ++ G + ++ D+ A+ + + + + W ++
Sbjct: 149 VYEARLKEFKYLAGETFTLTDLHHIPAIQ-YLLGTPTKKLFTERPRVNEWVAEITK 203
>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal
fibrinogen gamma...; gamma chain integrin fragment; HET:
GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1
c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A*
1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A*
3cru_A* 3d0z_A*
Length = 234
Score = 44.4 bits (105), Expect = 5e-05
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSG-S 126
KL + ++RYI N G E EI Y+ F +
Sbjct: 60 GDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKV 119
Query: 127 EFENAC----TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
+F + + L +T++ G ++ D ++ AL + LV
Sbjct: 120 DFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMC--LDAFPKLVC 177
Query: 183 WFNSLSA 189
+ + A
Sbjct: 178 FKKRIEA 184
>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET:
GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5
PDB: 2wrt_A 1fhe_A*
Length = 216
Score = 44.4 bits (105), Expect = 5e-05
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
+ KL + +LRYI G + E + + + +
Sbjct: 60 DKCKLTQSLAILRYIADKHGMIGTTSEERARVSMIEGAAVDLRQGISRISYQPKFEQLKE 119
Query: 133 TYV----------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
Y+ +L + ++ G S+S VD ++ AL + NL +
Sbjct: 120 GYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDAIRYLEPHC--LDHFPNLQQ 177
Query: 183 WFNSLSA 189
+ + + A
Sbjct: 178 FMSRIEA 184
>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma
class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP:
a.45.1.1 c.47.1.5 PDB: 1gsq_A*
Length = 202
Score = 44.3 bits (105), Expect = 5e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 24/105 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD---------YTPVFSSGSEFENA 131
+G+K+ + + R++ R G+ + E +DE + F+ + E
Sbjct: 56 DGTKMSQSMCIARHLAREFGLDGKTSLEKYRVDEITETLQDIFNDVVKIKFAPEAAKEAV 115
Query: 132 CTYVDK-------YLER--------RTFVVGHSLSIVDIAIWSAL 161
+K +LE F VG+S+++ D+ + AL
Sbjct: 116 QQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLHCYVAL 160
>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP:
a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A*
2aaw_A* 3fr6_A 3fr3_A*
Length = 211
Score = 44.4 bits (105), Expect = 5e-05
Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 24/105 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWL----DYTPVFSSGSEFENA----- 131
L + ++RY+ + N G++ D D F++ + F+
Sbjct: 65 GDLILAQSQAIVRYLSKKYNICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFL 124
Query: 132 -------CTYVDKYLER--------RTFVVGHSLSIVDIAIWSAL 161
Y +K L++ + + VG++L+ D+A+++
Sbjct: 125 NEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAVFNLY 169
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione
S-transferase; ankyrin binding, carrier crystallization,
ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1
c.47.1.5
Length = 254
Score = 44.4 bits (105), Expect = 5e-05
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSG-- 125
KL + ++RYI N G E EI Y+ F +
Sbjct: 61 GDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKV 120
Query: 126 ---SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
S+ + L +T++ G ++ D ++ AL + LV
Sbjct: 121 DFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMC--LDAFPKLVC 178
Query: 183 WFNSLSA 189
+ + A
Sbjct: 179 FKKRIEA 185
>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic,
heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5
Length = 224
Score = 44.4 bits (105), Expect = 5e-05
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
+K+ + +LRYI R N G+ E +D + + S +
Sbjct: 69 GKNKITQSNAILRYIARKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKP 128
Query: 133 TYV----------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
Y+ +L + ++ G L+ VD + L ++ NL
Sbjct: 129 QYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRIFDPKC--LDEFPNLKA 186
Query: 183 WFNSLSA 189
+ A
Sbjct: 187 FMCRFEA 193
>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene
family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A
3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A*
2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A*
2gst_A* ...
Length = 218
Score = 44.4 bits (105), Expect = 5e-05
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGS------ 126
K+ + +LRYI R N G++ E D + +
Sbjct: 66 GTHKITQSNAILRYIARKHNLCGESEKEQIREDILENQFMDSRMQLAKLCYDPDFEKLKP 125
Query: 127 EFENACT----YVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
E+ A ++L ++ + +G ++ VD + L S + NL
Sbjct: 126 EYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQVFEPSC--LDAFPNLKD 183
Query: 183 WFNSLSA 189
+ +
Sbjct: 184 FISRFEG 190
>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal
protein; 2.70A {Escherichia coli} SCOP: a.45.1.1
c.47.1.5
Length = 280
Score = 44.5 bits (105), Expect = 6e-05
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSG-S 126
KL + ++RYI N G E EI Y+ F +
Sbjct: 60 GDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKV 119
Query: 127 EFENAC----TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
+F + + L +T++ G ++ D ++ AL + LV
Sbjct: 120 DFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCL--DAFPKLVC 177
Query: 183 WFNSLSA 189
+ + A
Sbjct: 178 FKKRIEA 184
>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus}
SCOP: a.45.1.1 c.47.1.5
Length = 206
Score = 43.6 bits (103), Expect = 7e-05
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 29/136 (21%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G +L + + RY+ + F G +E+ ID D YT + +
Sbjct: 57 DGQQLAQSQAICRYLAKTFGFAGATPFESALIDSLADAYTDYRAEMKTYYYTALGFMTGD 116
Query: 128 FENACT-----YVDKYLER---------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK 173
+ T K+L F+VG +S VD+ + +A R
Sbjct: 117 VDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEY-- 174
Query: 174 SKKYQNLVRWFNSLSA 189
+ + + +
Sbjct: 175 IEGFPEVKAHMERIQQ 190
>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI
onchocerca volvulus, immune modulation; HET: GSH; 2.00A
{Onchocerca volvulus}
Length = 225
Score = 43.9 bits (104), Expect = 7e-05
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G+ L ++ + +G G N +E +I + P +
Sbjct: 81 SGNVLGESHAIELLLGGRFGLLGTNDWEEAKIMAVVLNIDELFQKLIPWTHEKNTTKKAE 140
Query: 128 -----FENAC----TYVDKYLERRT--FVVGHSLSIVDIAIWSAL 161
E+ +K+L+ T +VG+ +S+ D+ +++ L
Sbjct: 141 LFRNLSESDVMPFLGRYEKFLKESTTGHIVGNKVSVADLTVFNML 185
>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A
{Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A
Length = 229
Score = 44.0 bits (104), Expect = 7e-05
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD----------YTPVFSSGSEFEN 130
+G KL T +L YI N YG++ E ID ++ P S+ + +
Sbjct: 61 DGMKLVQTRAILNYIAGKYNLYGKDLKERALIDMYVGGTDDLMGFLLSFPFLSAEDKVKQ 120
Query: 131 ACTYVDKYLER-------------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
V+K R + F+VG+ LS DI + A+ ++ +
Sbjct: 121 CAFVVEKATSRYFPAYEKVLKDHGQDFLVGNRLSWADIHLLEAILMVEEKKSDA--LSGF 178
Query: 178 QNLVRWFNSLSA 189
L + +S+
Sbjct: 179 PLLQAFKKRISS 190
>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics,
protein structure initiative, nysgxrc; 2.04A
{Rhodopseudomonas palustris}
Length = 225
Score = 43.4 bits (103), Expect = 1e-04
Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 34/127 (26%)
Query: 92 LRYIGRVGNFYGQNAYEAGEIDEWL------------------DYTPVFSSGSEF----- 128
L Y+ + + E +W+
Sbjct: 73 LWYLAVGTSLAPDTRMDRAEALQWMFFEQHALEPNIGSAYFWLCLVKGGRDLQTHALEDW 132
Query: 129 ----ENACTYVDKYLERRTFVVGHSLSIVDIAIWS--ALAGTGQRWDSLRKSKKYQNLVR 182
A ++ +L+ + L+I DIA++ +A L + +
Sbjct: 133 LERGYAALQVMENHLKTNDYFAAGQLTIADIALYGYTHVADQCD--FDL---STFPAVNA 187
Query: 183 WFNSLSA 189
W +
Sbjct: 188 WLRRVEQ 194
>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase
homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}
Length = 288
Score = 43.9 bits (104), Expect = 1e-04
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIWS-----ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
DK L + FV G +I D+AIW L G + L + Y+++ RW +
Sbjct: 191 DKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVYDAAEFL-DAGSYKHVQRWAKEVGE 248
>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET:
GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1
c.47.1.5
Length = 249
Score = 43.6 bits (103), Expect = 1e-04
Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 23/104 (22%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G ++ + + R++ + G +E +ID +D V +
Sbjct: 103 DGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEK 162
Query: 128 -----FENACTYVDKYLERR-----TFVVGHSLSIVDIAIWSAL 161
+ + LE+ + L+ D+
Sbjct: 163 KLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGIT 206
>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier,
S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A*
14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A*
3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A*
17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...
Length = 210
Score = 43.1 bits (102), Expect = 1e-04
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
L + +LR++GR YG++ EA +D D Y + + E
Sbjct: 59 GDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDD 118
Query: 128 FENACTYVDKYLER--------RTFVVGHSLSIVDIAIWSAL 161
+ A K E +TF+VG +S D + L
Sbjct: 119 YVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLL 160
>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein
structure initiative, N SGX research center for
structural genomics; HET: GSH; 1.75A {Pseudomonas
fluorescens}
Length = 210
Score = 43.0 bits (102), Expect = 1e-04
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIWS--ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+K L R ++VG SI DIA+++ +A G L +Y + W + +
Sbjct: 143 EKQLSRTPYLVGEHYSIADIALYAYTHVADEGG--FDL---SRYPGIQAWMQRVQS 193
>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme,
prostaglandin D2 synthase, vaccine candidate; HET: GSH;
1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5
PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A*
2cai_A* 1u3i_A*
Length = 211
Score = 42.8 bits (101), Expect = 1e-04
Identities = 9/105 (8%), Positives = 29/105 (27%), Gaps = 23/105 (21%)
Query: 80 SNGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE---- 127
+ + + + RY+ + + G E +++ + Y E
Sbjct: 63 GHVKWMVESLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQK 122
Query: 128 -----FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSAL 161
+ + VG +++ D+ + + +
Sbjct: 123 IIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVI 167
>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis
sinensis}
Length = 218
Score = 42.9 bits (101), Expect = 1e-04
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
L + +LRYI N G E +I Y F
Sbjct: 61 GNFSLTQSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKV 120
Query: 128 FENAC-----TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
++L +++ G + + +D + AL + + + NL++
Sbjct: 121 PYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDPTS--VEAFPNLMQ 178
Query: 183 WFNSLSA 189
+ + + A
Sbjct: 179 FIHRIEA 185
>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI,
protein structure initiative; 3.00A {Caenorhabditis
elegans}
Length = 208
Score = 42.7 bits (101), Expect = 1e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 28/109 (25%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSE 127
+G +L + +LRY+ R F G+ E +D D +E
Sbjct: 58 DGFELPQSGAILRYLARKFGFAGKTPEEEAWVDAVHDLFKDFLAEFKKFAAERRSGKSAE 117
Query: 128 F------ENACTYVDKYLER---------RTFVVGHSLSIVDIAIWSAL 161
E + Y F++G ++ D+ + L
Sbjct: 118 EVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLVVVDNL 166
>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification
enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus
gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*
Length = 219
Score = 42.5 bits (100), Expect = 2e-04
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 20/127 (15%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC 132
KL + +LRYI R N G+ E +D + + + S +
Sbjct: 65 GDVKLTQSNAILRYIARKHNMCGETEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKP 124
Query: 133 TYV----------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
Y+ ++L R++ VG L+ VD + L + NL +
Sbjct: 125 AYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYDVLDQQRMFVPDC--PELQGNLSQ 182
Query: 183 WFNSLSA 189
+ A
Sbjct: 183 FLQRFEA 189
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Length = 244
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 43/135 (31%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYV------------ 135
L Y+ ++Y + + E+L + + +
Sbjct: 71 LIYLSCKYQTPDHWYPSDLQARARVHEYLG----WHADCIRGTFGIPLWVQVLGPLIGVQ 126
Query: 136 ---------------------DKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS 174
DK+L R F+ G +++ D+ L L
Sbjct: 127 VPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELF-- 184
Query: 175 KKYQNLVRWFNSLSA 189
+ L W + A
Sbjct: 185 EGRPRLAAWRGRVEA 199
>2c3n_A Glutathione S-transferase theta 1; glutathione transferase,
polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A
Length = 247
Score = 42.7 bits (101), Expect = 2e-04
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 36/132 (27%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLD------------------YTPVFSSGSEFE 129
L Y+ +Y Q+ +DE+L PVF
Sbjct: 78 LLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSP 137
Query: 130 NAC------------TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
DK+L+ + F+ G +S+ D+ + L + +
Sbjct: 138 QTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVF--EGR 195
Query: 178 QNLVRWFNSLSA 189
L W + A
Sbjct: 196 PKLATWRQRVEA 207
>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A
{Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*
Length = 219
Score = 42.2 bits (100), Expect = 2e-04
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 29/117 (24%)
Query: 99 GNFYGQNAYEAGEIDEWLD-------------YTPVFSSGS----------EFENACTYV 135
Y + + + L Y P + E A ++
Sbjct: 86 ERLYPSDPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIAGQKVPVGDPGRLRSMEQALEFL 145
Query: 136 DKYLERRTFVV-GHSLSIVDIAIWSALAGTG-QRWDSLRKSKKYQNLVRWFNSLSAE 190
+ +LE +V G +I D++I + +A +D ++Y+N+ RW+ SA
Sbjct: 146 NTFLEGEQYVAGGDDPTIADLSILATIATYEVAGYD----LRRYENVQRWYERTSAI 198
>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus}
SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*
Length = 208
Score = 42.0 bits (99), Expect = 2e-04
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 24/131 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
++ + +LR++ R N G+N E ID + + YT + E
Sbjct: 56 GDQQIVQSGAILRHLARKYNLNGENEMETTYIDMFCEGVRDLHVKYTRMIYMAYETEKDP 115
Query: 128 -----FENACTYVDKYLER----RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQ 178
+K L R ++G +S D A++ L K+
Sbjct: 116 YIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEELDVHQILDPHC--LDKFP 173
Query: 179 NLVRWFNSLSA 189
L + +
Sbjct: 174 LLKVFHQRMKD 184
>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification;
HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A
Length = 230
Score = 41.9 bits (99), Expect = 3e-04
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 32/125 (25%)
Query: 92 LRYIG-RVGNFYGQNAYEAGEIDEWLDY--------------------------TPVFSS 124
+ +I ++ W+ + +
Sbjct: 90 VMHIAQHHSGLLPEDQLRRARTVAWMFAALNTIEPSILNFTTVWLFERNEPWHEARLART 149
Query: 125 GSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWF 184
+ + +L R ++ G S S DI + L R +S K Y NL+ +
Sbjct: 150 KEQLLKRLDELSAWLGDREWLEG-SFSAADILMICVLR----RLESSGILKDYGNLLAYV 204
Query: 185 NSLSA 189
A
Sbjct: 205 ERGKA 209
>1f2e_A Glutathione S-transferase; GST complexed with glutathione,
thioredoxin superfamily fold transferase; HET: GSH;
2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1
c.47.1.5
Length = 201
Score = 41.8 bits (99), Expect = 3e-04
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 28/111 (25%)
Query: 101 FYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EFENACTYVDKYLER 141
+ + + + L + P+F+ + +N +DK L
Sbjct: 83 APAEGSLDRYRLLSRLSFLGSEFHKAFVPLFAPATSDEAKAAAAESVKNHLAALDKELAG 142
Query: 142 RTFVVGHSLSIVDIAIWSAL---AGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
R G++ S+ DI ++ L A G Y L + ++
Sbjct: 143 RDHYAGNAFSVADIYLYVMLGWPAYVGIDMA------AYPALGAYAGKIAQ 187
>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH;
1.59A {Fasciola hepatica} PDB: 2wdu_A*
Length = 211
Score = 41.6 bits (98), Expect = 3e-04
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 23/101 (22%)
Query: 84 KLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC--- 132
+ Q + + R + R G+ E I+ + +F + + A
Sbjct: 67 RYQESMAIARLLARQFKMMGETDEEYYLIERIIGECEDLYREVYTIFRTPQGEKEAKIKE 126
Query: 133 ----------TYVDKYLERR--TFVVGHSLSIVDIAIWSAL 161
V + LE V G+ +++ D+ +++ L
Sbjct: 127 FKENNGPTLLKLVSESLESSGGKHVAGNRITLGDLFLFTTL 167
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism,
PSI2, NYSGXRC, structural genomics, protein structure
initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Length = 225
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/127 (8%), Positives = 33/127 (25%), Gaps = 32/127 (25%)
Query: 92 LRYIGRV--GNFYGQNAYEAGEIDEWLDY---------------------------TPVF 122
+I R G ++ E + W + +
Sbjct: 81 TLHIARTQGGQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAIA 140
Query: 123 SSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVR 182
+ ++++ ++VG ++ D+ + L L + + +
Sbjct: 141 IAAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALL---EPFPAVAA 197
Query: 183 WFNSLSA 189
W + +
Sbjct: 198 WLDRCQS 204
>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea
mays} SCOP: a.45.1.1 c.47.1.5
Length = 216
Score = 41.5 bits (98), Expect = 4e-04
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 11/61 (18%)
Query: 134 YVDKYLERRTFVVGHSLSIVDIAIWSAL-----AGTGQRWDSLRKSKKYQNLVRWFNSLS 188
+ +L R ++ G ++ D S L + ++ W+ ++
Sbjct: 145 VYEAHLARNKYLAGDEFTLADANHASYLLYLSKTPKAGLVAA------RPHVKAWWEAIV 198
Query: 189 A 189
A
Sbjct: 199 A 199
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water
structu transferase; HET: GTX; 1.30A {Homo sapiens}
SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A*
1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A*
3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A*
1xwg_A 3l0h_A* 1ags_A* ...
Length = 221
Score = 41.7 bits (98), Expect = 4e-04
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSE----- 127
+G KL T +L YI N YG++ E ID +++ + E
Sbjct: 60 DGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYIEGIADLGEMILLLPVCPPEEKDAK 119
Query: 128 ----FENACTYVDKYLER------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
E E+ + ++VG+ LS DI + L + SL +
Sbjct: 120 LALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEELDSSLI--SSF 177
Query: 178 QNLVRWFNSLSA 189
L +S
Sbjct: 178 PLLKALKTRISN 189
>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit
cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP:
a.45.1.1 c.47.1.5 PDB: 1guk_A
Length = 221
Score = 41.7 bits (98), Expect = 4e-04
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD---------YTPVFSSGSEFENA 131
+G L T +L Y+ N YG++ E ID + D F + E E +
Sbjct: 60 DGMMLTQTRAILSYLAAKYNLYGKDLKERVRIDMYADGTQDLMMMIAVAPFKTPKEKEES 119
Query: 132 -----CTYVDKYLER---------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKY 177
+Y F+VG+ LS DI + A+ + + +
Sbjct: 120 YDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQLLEAILMVEELSAPVL--SDF 177
Query: 178 QNLVRWFNSLSA 189
L + +S
Sbjct: 178 PLLQAFKTRISN 189
>3lxz_A Glutathione S-transferase family protein; structural genomics,
PP0183, PSI-2, protein structure initiative; 1.76A
{Pseudomonas putida} PDB: 3pr8_A*
Length = 229
Score = 41.5 bits (98), Expect = 4e-04
Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA---GTGQRWDSLRKSKKYQNLVRW 183
+ + + +V G L++ D+ ++ G++ ++ +
Sbjct: 129 DLLAGFATLKRNGRFAPYVAGEQLTLADLMFCFSVDLANAVGKKVLNIDFLADFPQAKAL 188
Query: 184 FNSLSA 189
+
Sbjct: 189 LQLMGE 194
>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A
{Xylella fastidiosa}
Length = 207
Score = 41.4 bits (98), Expect = 4e-04
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186
+ D +L+ ++ S D ++ L + L L +F
Sbjct: 134 KLRVLYQRADAHLKHHNWLANGQRSGADAYLYVTLRWAKKVGVDL---SSLDALSAFFER 190
Query: 187 LSA 189
+ A
Sbjct: 191 MEA 193
>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione,
structural genomics, protein structure initiative; HET:
GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*
Length = 213
Score = 41.2 bits (97), Expect = 5e-04
Identities = 20/197 (10%), Positives = 49/197 (24%), Gaps = 46/197 (23%)
Query: 37 MTMEIKVLSFPADSPPLLVIAAAKLAGI------TIPTETS---------GSAPTFSFSN 81
M++ K++ V + K G+ T APT
Sbjct: 1 MSL--KLIGMLDSPYVRRVAISLKSLGLPFEHHSLSVFSTFEQFKAINPVVKAPTLVCEG 58
Query: 82 GSKLQGTYVLLRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGSEF 128
G L + +++ Y+ G + + + V+
Sbjct: 59 GEVLMDSSLIIDYLETLAGPQRSLMPTALPQRLRELRLVGLALAACEKSVQIVYERNLRP 118
Query: 129 EN----------------ACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLR 172
A +++ L+++ SL I++ A + +
Sbjct: 119 AEKQHGPWLERVGGQLQAAYGELEQELQKQPLPRDGSLGQAGISLAVAWSFSQMMVADQF 178
Query: 173 KSKKYQNLVRWFNSLSA 189
++ + +
Sbjct: 179 NPGQFPAVRGFAEYAEQ 195
>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula
elliptica} PDB: 3qaw_A*
Length = 243
Score = 41.5 bits (98), Expect = 5e-04
Identities = 11/99 (11%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 92 LRYIGRVGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYL-ERRTFVVGHSL 150
+ + + + + +D + + + + YL + FV
Sbjct: 122 MFETSNISTNVMEFVQYKMKNKDSIDQVLLKEKKDKAHVELGHWENYLKQTGGFVATKEF 181
Query: 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
++ D+ + +A ++ +L Y N+ +++N +
Sbjct: 182 TMADVFFFPMVALIVRQGANL--KDSYPNIFKYYNMMMD 218
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella
bronchisepti structural genomics, PSI-2, protein
structure initiative; 1.83A {Bordetella bronchiseptica
RB50}
Length = 252
Score = 41.0 bits (96), Expect = 8e-04
Identities = 12/143 (8%), Positives = 36/143 (25%), Gaps = 34/143 (23%)
Query: 81 NGSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD---------------YTPVFSSG 125
+G + T +L ++G + +++
Sbjct: 80 DGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYE 139
Query: 126 SEFENACTYVDKYLERRT-----------------FVVGHSLSIVDIAIWSALAGTGQRW 168
+ + A + E R S D++++ + G +
Sbjct: 140 DQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAF 199
Query: 169 DSLRKS--KKYQNLVRWFNSLSA 189
++ +Y L+ ++
Sbjct: 200 PRRMRTLVHRYPRLMALHARVAE 222
>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles
gambiae} PDB: 2il3_A* 2imk_A*
Length = 221
Score = 40.3 bits (95), Expect = 0.001
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 31/125 (24%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLD-------------YTPVFSSGSEF------ 128
+ Y+ G+ + Y ++ + ++ L + + G
Sbjct: 72 MIYLVTKYGKDDSLYPKDPVKQARVNSALHFESGVLFARMRFIFERILFFGKSDIPEDRV 131
Query: 129 ---ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD-SLRKSKKYQNLVRWF 184
+ + ++ L FV G +++I D + S ++ K+ + W
Sbjct: 132 EYVQKSYELLEDTLVDD-FVAGPTMTIADFSCISTISSIMGVVPLEQ---SKHPRIYAWI 187
Query: 185 NSLSA 189
+ L
Sbjct: 188 DRLKQ 192
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH;
1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Length = 226
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLS 188
+ A + + L RT+ G+ L++ DIA+ ALA R + +++ NL ++ +
Sbjct: 134 DEALKAMSRGLADRTWCNGNHLTLADIAVGCALAYLDFRQPQVDWREQHANLAAFYTRIE 193
Query: 189 A 189
Sbjct: 194 K 194
>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia
xenovorans} PDB: 2gdr_A*
Length = 203
Score = 39.9 bits (94), Expect = 0.001
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 32/124 (25%)
Query: 92 LRYI----GRVGNFYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EF 128
++Y+ ++E + +WL++ +P+F+ S
Sbjct: 70 VQYVADQVPGKQLAPANGSFERYHLQQWLNFISSELHKSFSPLFNPASSDEWKNAVRQSL 129
Query: 129 ENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA---GTGQRWDSLRKSKKYQNLVRWFN 185
V + LE +++G LS+ DI ++ L + +L +
Sbjct: 130 NTRLGQVARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDLS------PWPSLQAFQG 183
Query: 186 SLSA 189
+
Sbjct: 184 RVGG 187
>4ecj_A Glutathione S-transferase; transferase-like protein, transcription
regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa}
PDB: 4eci_A*
Length = 244
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 136 DKYLERRTFVVGHSLSIVDIAIW---SALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
D L ++ G SI DIA + +G D NL RW ++ A
Sbjct: 143 DGRLGEAEYLAG-DYSIADIATYPWVRIHDWSGVAVDG------LDNLQRWIAAIEA 192
>2hqt_A GU4 nucleic-binding protein 1; GST-fold, biosynthetic protein, RNA
binding; 1.90A {Saccharomyces cerevisiae} SCOP: a.45.1.2
PDB: 2hrk_B 2hsm_B 2hsn_B
Length = 124
Score = 38.1 bits (88), Expect = 0.002
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 108 EAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHS-LSIVDIAIWSALAG--- 163
++ + +W + + ++ L TF+V + D+ ++
Sbjct: 26 QSAQAAQWESV----LKSGQIQPHLDQLNLVLRDNTFIVSTLYPTSTDVHVFEVALPLIK 81
Query: 164 --TGQRWDSLRKSKKYQNLVRWF----NSLSAEYSDSL 195
D Y++++RW N L +D L
Sbjct: 82 DLVASSKDVKSTYTTYRHILRWIDYMQNLLEVSSTDKL 119
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 39.1 bits (92), Expect = 0.002
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 135 VDKYLERRT--FVVGHSLSIVDIAIWSALAGTGQRWD-SLRKSKKYQNLVRWFNSLSA 189
++K L G + + D+ + + G R+ ++ + Y L + + S +
Sbjct: 147 LEKLLVNCAGKHATGDEIYLADLFLAPQIHGAINRFQINM---EPYPTLAKCYESYNE 201
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 39.6 bits (92), Expect = 0.003
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIV-------RFDDTNPAKESNEFVDNLLKDIE 309
P + + +Y + Q+I+ + E+++ ++L+K I
Sbjct: 90 YPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYIL 149
Query: 310 TLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMD 357
G + +D + +M + KA + + E D
Sbjct: 150 AFGFNEDKTFIYTD-YQYFGKMYRTISLVEKATAYNVVQPFFNFEYSD 196
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 39.3 bits (92), Expect = 0.004
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 258 PSGYLHIGHSKAALLNQYFAQRYQGQLIV--------RFDDTNPAKESNEFVDNLLKDIE 309
PSG +HIGH ++ +++ L + F + ++ + + + DI
Sbjct: 82 PSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDII 141
Query: 310 TLGIKYETVTYTSDYFPDLMEMAENLIR 337
+G + + + ++ E I
Sbjct: 142 AVGFDPDKTFIFQNS--EFTKIYEMAIP 167
>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold,
structura genomics, joint center for structural
genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP:
a.45.1.1 c.47.1.5
Length = 248
Score = 38.3 bits (89), Expect = 0.005
Identities = 10/136 (7%), Positives = 32/136 (23%), Gaps = 28/136 (20%)
Query: 82 GSKLQGTYVLLRYIGRVGNFYGQNAYEAGEIDEWLD-----YTPVFSSGSEFENACTYVD 136
+ + Y+G + + ++ + +G
Sbjct: 80 NFAISQMPAIAIYLGERLDILPATVEGRTLSAKIVNDANDVLDELTLNGGREMWTPEKWQ 139
Query: 137 KYLER--------------------RTFVVGH-SLSIVDIAIWSALAGTGQRWDSLRK-- 173
+++ R F++G + + DI R+ +++
Sbjct: 140 EFVPRLQKWIRIFADTGARNGLSAASGFMLGTEKIGVADIVTAILWTTVADRFPAIKGII 199
Query: 174 SKKYQNLVRWFNSLSA 189
+ + A
Sbjct: 200 EDTSPIIWGLSRRVVA 215
>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene
regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae}
SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A*
1k0a_A* 1g6w_A 1g6y_A 1hqo_A
Length = 260
Score = 37.0 bits (86), Expect = 0.016
Identities = 7/79 (8%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Query: 111 EIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDS 170
++ ++ ++ + ++VG L+I D+A
Sbjct: 173 REALVMELDTENAAAYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVD--RIG 230
Query: 171 LRKSKKYQNLVRWFNSLSA 189
+ ++ + +W +
Sbjct: 231 INIKIEFPEVYKWTKHMMR 249
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 36.8 bits (86), Expect = 0.024
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 25/107 (23%)
Query: 261 YLHIGHSKAAL----LNQYFAQRYQGQLIVRF-------DD--TNPAKESNE-------- 299
HIGH + + + +Y R+ G +++ DD A E+ E
Sbjct: 35 LCHIGHGRTFVAFDVVARYL--RFLG-YKLKYVRNITDIDDKIIKRANENGESFVAMVDR 91
Query: 300 FVDNLLKDIETLGIKYETVT-YTSDYFPDLMEMAENLIRQGKAYVDD 345
+ + KD + L I + + + +++E+ E LI +G AYV D
Sbjct: 92 MIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVAD 138
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 36.7 bits (86), Expect = 0.028
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 261 YLHIGHSKAA----LLNQYFAQRYQGQLIVRF-------DD--TNPAKESNE-------- 299
Y+HIGH ++ ++ +Y R +G V F DD A E+ E
Sbjct: 38 YMHIGHGRSWIIFDMVVRYL--RMRG-YEVTFVRNITDIDDKIIKRAGENKESPAALAER 94
Query: 300 FVDNLLKDIETLGIKYETVT-YTSDYFPDLMEMAENLIRQGKAYV 343
F+ L +D + L + + Y P+++++ + L+ AY
Sbjct: 95 FIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYT 139
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 36.5 bits (84), Expect = 0.030
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)
Query: 257 EPSGY-LHIGHSKAALLNQYFAQRYQGQLIV-------RFDDTNPAKESNEFVDNLLKDI 308
PS +H+GH + ++ + L++ ++ KDI
Sbjct: 116 GPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDI 175
Query: 309 ETLGIKYETVTYTSD--YFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGI 359
G SD Y +N+++ K + + D I
Sbjct: 176 IACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI 228
>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET:
GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*
Length = 201
Score = 35.6 bits (83), Expect = 0.034
Identities = 6/64 (9%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 127 EFENACTYVDKYL-ERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFN 185
++ L ++ + +G + D + + L Y ++
Sbjct: 127 NINRRLGQLEAMLSDKNAYWLGDDFTQPDAYASVIIGWGVGQKLDLS---AYPKALKLRE 183
Query: 186 SLSA 189
+ A
Sbjct: 184 RVLA 187
>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A
{Methylococcus capsulatus} PDB: 3uap_A*
Length = 227
Score = 35.4 bits (82), Expect = 0.047
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 29/112 (25%)
Query: 101 FYGQNAYEAGEIDEWLDY---------TPVFSSGS----------EFENACTYVDKYLE- 140
+E + EWL + P ++ S YV+ LE
Sbjct: 85 MPPSGTFERYRLLEWLAFISTEIHKTFGPFWNPESPEASKQIALGLLSRRLDYVEDRLEA 144
Query: 141 RRTFVVGHSLSIVDIAIWSAL---AGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+++G S+ D + + L K+ ++ + A
Sbjct: 145 GGPWLMGDRYSVADAYLSTVLGWCEYLKIDLS------KWPRILAYLERNQA 190
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 35.3 bits (82), Expect = 0.070
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 31/110 (28%)
Query: 261 YLHIGHSKAA----LLNQYFAQRYQGQLIVRF-------DD--TNPAKESNE-------- 299
H+GH+ L+++ + G V++ DD A+
Sbjct: 52 ATHLGHAATYLTFDLVHRLW--LDAG-HTVQYVQNVTDVDDPLFERAERDGIDWRTLGDR 108
Query: 300 FVDNLLKDIETLGIK----YETVTYTSDYFPDLMEMAENLIRQGKAYVDD 345
+D+ L + Y T D +++EM E L+ G AY+ +
Sbjct: 109 ETQLFREDMAALRVLPPHDYVAAT---DAIAEVVEMVEKLLASGAAYIVE 155
>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione;
HET: GSH; 1.05A {Escherichia coli}
Length = 202
Score = 34.6 bits (80), Expect = 0.073
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 98 VGNFYGQNAYEAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAI 157
+ + Q A + ++ L + + ++ YL T ++++ IAI
Sbjct: 105 LVSVREQARPAAQQSEDELL-----RQREKINRSLDVLEGYLVDGTLK-TDTVNLATIAI 158
Query: 158 WSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
A+ R + +LV+ +L +
Sbjct: 159 ACAVGYLNFRRVAPGWCVDRPHLVKLVENLFS 190
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans
serovar lai} PDB: 3ubl_A*
Length = 242
Score = 34.3 bits (79), Expect = 0.12
Identities = 4/67 (5%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALA----GTGQRWDSLRKSKKYQNLVR 182
+ + + ++ G+ ++ D + ++ L+ + +
Sbjct: 128 TLVKGIKALQRVVRFSPYIAGNVFTLADCSGFAHLSVLDEELRPFYPNNHPLDLLNGWKE 187
Query: 183 WFNSLSA 189
+F +
Sbjct: 188 YFVFMKT 194
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 34.5 bits (79), Expect = 0.13
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 257 EPSGY-LHIGHSKAALLNQYFAQRYQGQLIV--------RFDDTNPAKESNEFVDNLLKD 307
PS LH+GH L +Y ++ L++ F +E++ + +KD
Sbjct: 82 GPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKD 141
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIR 337
I G E ++ + E+ +++R
Sbjct: 142 IIACGFDPELTFIFTNL-EYIAELYPDILR 170
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 34.4 bits (78), Expect = 0.15
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 259 SGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDT--------NPAKESNEFVDNLLKDIET 310
SG LH+GH + +Y ++ ++++ D E + + +KDI
Sbjct: 102 SGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIA 161
Query: 311 LGIKYETVT-YTSDYFPDLMEMAENLIR 337
G + + + + L
Sbjct: 162 CGFDPDKTFIFINSQYLSLKNRYRFSCL 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.20
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 40 EIKVLS-----FPADSPPLLVIAAA 59
+K L + DS P L I A
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKAT 45
Score = 28.8 bits (63), Expect = 4.4
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 9/25 (36%)
Query: 22 TSSLQ------QPALVLLALVMTME 40
+SL+ PAL + A TME
Sbjct: 26 QASLKLYADDSAPALAIKA---TME 47
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 33.7 bits (76), Expect = 0.25
Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 27/200 (13%)
Query: 258 PSGYLHIGH----SKAALLNQYFAQR-YQGQLIVRFDDTNPAKESNEFVDNLLKDIETLG 312
PSGY+H+G+ A ++ + Y+ + I +DD + ++ V K + LG
Sbjct: 30 PSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWK--DYLG 87
Query: 313 IKYETVTYTSDYFPDLMEMAENLIRQGKAYVDD---TPREQMQKERMD-GIESKCRNNSI 368
+ ++ D + AE+ +R+ + V+ E G S+ +
Sbjct: 88 M---PISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAF 144
Query: 369 EENMKLWK------------EMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPH 416
E+ K+ + + + C + + + V Y+C H
Sbjct: 145 EKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPE-GH 203
Query: 417 HRIGSKYKVYPTYDFACPFV 436
+ +
Sbjct: 204 EGWVDIRSGNVKLRWRVDWP 223
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 33.4 bits (76), Expect = 0.26
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 10/108 (9%)
Query: 257 EPSGY-LHIGHSKAALLNQYFAQRYQGQLIV-------RFDDTNPAKESNEFVDNLLKDI 308
PS +H+GH + ++ + L++ ++ KDI
Sbjct: 163 GPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDI 222
Query: 309 ETLGIKYETVT--YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKE 354
G DY +N+++ K + +
Sbjct: 223 IACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFT 270
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 33.1 bits (75), Expect = 0.33
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 257 EPSGY-LHIGHSKAALLNQYFAQRYQGQL-IVRFDDTNPA-------KESNEFVDNLLKD 307
PS +H+GH + ++ + + L I DD + F KD
Sbjct: 110 GPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKD 169
Query: 308 IETLGIKYETVTYTSDYFPDLMEMAENLIRQGK 340
I +G + SD E ++R +
Sbjct: 170 IIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSR 202
>3n5o_A Glutathione transferase; seattle structural genomics center for
infectious disease, S GST, pathogenic fungus,
coccidioidomycosis; HET: GSH; 1.85A {Coccidioides
immitis} PDB: 3lg6_A*
Length = 235
Score = 32.8 bits (75), Expect = 0.34
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 135 VDKYLER--RTFVVGHSLSIVDIAIWS---ALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
V+K LE F VG +++ D+ + A G ++ R F +
Sbjct: 161 VEKLLELSAGRFCVGDEITLADVCLVPAVWAAERVGMDLA------RFPITKRVFEEMLK 214
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 32.2 bits (74), Expect = 0.60
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 41/121 (33%)
Query: 260 GYLHIGHSKAA----LLNQYFAQRYQGQLIVRF-----------------DD--TNPAKE 296
Y HIG+ + LL + R+ G V + +D A+E
Sbjct: 54 NYAHIGNFRTYIFGDLLIKTL--RFLG-YKVNYAMNITDIGHLTGDLDDGEDKVAKTARE 110
Query: 297 SNE--------FVDNLLKDIETLGIK----YETVTYTSDYFPDLMEMAENLIRQGKAYVD 344
F + D L I + + P ++E+ + L + Y
Sbjct: 111 KGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVAS---KHIPIMIEVVKILEEKKITYFS 167
Query: 345 D 345
+
Sbjct: 168 N 168
>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal
domain-like fold, structura genomics, joint center for
structural genomics; 2.05A {Ralstonia eutropha}
Length = 214
Score = 31.5 bits (72), Expect = 0.63
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL--AGTGQRWDSLRKSKKYQNLVRWF 184
K + +V G + ++ D A L + + + + +
Sbjct: 127 LLSRYVPAFAKLAKFSPYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLPVKEYL 186
Query: 185 NSLSA 189
+LS
Sbjct: 187 KTLSE 191
>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1,
NPPSFA, national project protein structural and
functional analyses; HET: GSH; 1.40A {Mus musculus} PDB:
2cz3_A 1fw1_A*
Length = 223
Score = 31.4 bits (72), Expect = 0.68
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 127 EFENACTYVDKYLERRT--FVVGHSLSIVDIAIWSALAGTGQRWD-SLRKSKKYQNLVRW 183
+ ++K L+ + VG +S+ D+ + +A +R+ L Y +
Sbjct: 141 VITSGFNALEKILQSTAGKYCVGDEVSMADVCLVPQVA-NAERFKVDL---SPYPTISHI 196
Query: 184 FNSLSA 189
L A
Sbjct: 197 NKELLA 202
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A
{Glycine max} PDB: 3fhs_A*
Length = 219
Score = 31.2 bits (71), Expect = 0.87
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSK---KYQNLVRW 183
EF A +++ L +T+ G +L VDIA+ + +++ + + W
Sbjct: 127 EFIEALKLLEEQLGDKTYFGGDNLGFVDIALVP-FYTWFKAYETFGTLNIESECPKFIAW 185
Query: 184 FNSLSA 189
Sbjct: 186 AKRCLQ 191
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 31.2 bits (71), Expect = 1.2
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 257 EPSGYLHIGHSKAALLNQYFAQRYQGQLIV-------RFDDTNPA--KESNEFVDNLLKD 307
EPSG +HI + ++N GQ+I+ + + + E ++
Sbjct: 48 EPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEV 107
Query: 308 IETLGIKYETVT--YTSDYFPDLMEMAENLIR 337
+ GI + + S++ E ++
Sbjct: 108 FKACGINLDGTRFIWASEFIASNPSYIERMLD 139
>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1;
glutathione-S-tranferase superfamily, chloride ION
channel, metal transport; 1.40A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A
3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A
Length = 241
Score = 31.0 bits (70), Expect = 1.3
Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 21/98 (21%)
Query: 111 EIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDS 170
+D +L S E + + D+ + +R F+ G+ L++ D + L
Sbjct: 139 VLDNYLT-----SPLPEGVDETSAEDEGVSQRKFLDGNELTLADCNLLPKL----HIVQV 189
Query: 171 LRK-------SKKYQNLVRWFNSLSAEYSDSLDEVTAT 201
+ K + ++ + R+ ++ + +E +T
Sbjct: 190 VCKKYRGFTIPEAFRGVHRYLSNAY-----AREEFAST 222
>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid,
bacterial, biodegradation, fumaryl pyruvate; HET: TGG;
1.3A {Ralstonia SP} PDB: 2jl4_A*
Length = 214
Score = 30.4 bits (69), Expect = 1.5
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 128 FENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWD-SLRKSKKYQNLVRWFNS 186
F+ + +R + G + ++ D + + + +R+ L Y + +
Sbjct: 140 FDAYEALLAVDPKRGRYSFGDTPTLADCYLVPQVE-SARRFQVDL---TPYPLIRAVDAA 195
Query: 187 LSA 189
Sbjct: 196 CGE 198
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 30.7 bits (69), Expect = 1.8
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 257 EPSGY-LHIGHSKAALLNQYFAQRYQGQLIVRFDDT-------NPAKESNEFVDNLLKDI 308
PS +H+GH + ++ ++ L+++ D P ++ +KDI
Sbjct: 86 GPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDI 145
Query: 309 ETLGIKYETVT--YTSDYFPDLMEMAENLIRQ 338
+G E DY + + R
Sbjct: 146 IAMGFDPELTFIFRDFDYMGCMYRTVAKIERA 177
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase,
PSI, MCSG, structural genomics; 2.40A {Pseudomonas
syringae PV}
Length = 310
Score = 30.6 bits (68), Expect = 2.0
Identities = 14/110 (12%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 126 SEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFN 185
++ + ++ L + + SI D ++ L Q + Y ++ W +
Sbjct: 154 HQWPTFMSRLESQLSHGGDFLFGAPSIADFSVAHTLWFLKQTPVTAPFVDDYPSVSVWLD 213
Query: 186 SLSAEYSDSLDEVTATYVSNRGLGKPTAAKSKEQQGVKGDVSEKGKAGSR 235
+ SL ++++ + + A KAG +
Sbjct: 214 RVLGFGHGSLSDLSSAA----AIEIASNATPAPLPDETFIDPNGFKAGDK 259
>3lyk_A Stringent starvation protein A homolog; structural genomics,
GST-superfamily, SSPA, PSI-2, protein structure
initiative; 2.10A {Haemophilus influenzae}
Length = 216
Score = 30.0 bits (68), Expect = 2.1
Identities = 4/66 (6%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRK---SKKYQNLVRW 183
+ + + ++ + + +VD + L + L + + +
Sbjct: 127 QLKEELLGIAPIFQQMPYFMNEEFGLVDCYVAPLLW----KLKHLGVEFTGTGSKAIKAY 182
Query: 184 FNSLSA 189
+
Sbjct: 183 MERVFT 188
>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase
superfamily, CLIC4, NCC27, chloride ION channel, metal
transport; 1.80A {Homo sapiens} PDB: 2d2z_A
Length = 267
Score = 30.3 bits (68), Expect = 2.3
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 111 EIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVGHSLSIVDIAIWSAL---AGTGQR 167
++DE+L+ S + + + D R F+ G+ +++ D + L ++
Sbjct: 150 KLDEYLN-----SPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKK 204
Query: 168 WDSLRKSKKYQNLVRWFNSLSAEYSDSLDEVTAT 201
+ + K+ + R+ + S DE T T
Sbjct: 205 YRNFDIPKEMTGIWRYLTNAY-----SRDEFTNT 233
>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase;
HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*
Length = 241
Score = 30.0 bits (68), Expect = 2.5
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 127 EFENACTYVDKYLERR--TFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSK---KYQNLV 181
EF T +++ L + TF G+S+S++D IW +R ++++ ++ L
Sbjct: 145 EFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWF----ERLEAMKLNECVDHTPKLK 200
Query: 182 RWFNSLSA 189
W ++
Sbjct: 201 LWMAAMKE 208
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 30.0 bits (67), Expect = 3.4
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 257 EPSG-YLHIGHSKAALLNQYFAQRYQGQLIV-------RFDDTNPAKESNEFVDNLLKDI 308
PS +HIGH+ LL +Y ++ +L++ + +++ + +KDI
Sbjct: 109 GPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDI 168
Query: 309 ETLGIKYE-TVTYTSDYFPDLMEM 331
TLG + T +++ E
Sbjct: 169 VTLGFDPKLTYIFSNVEASHHFEE 192
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 29.6 bits (67), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 32 LLALVMTMEIKVLSFPADSPPLLVIAAAKLAGI-TIPTETS 71
LA+++ + V+SF P VIA + AG T+ T T+
Sbjct: 114 KLAVLLDDPVPVVSFHFGVPDREVIARLRRAGTLTLVTATT 154
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 29.7 bits (66), Expect = 4.6
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 6/114 (5%)
Query: 289 DDTNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPR 348
+D + + E L ++ + + + SD L E+ E G Y+ T
Sbjct: 315 EDQGEVEAALEGRLPKLLELPQVKGDLQVHSTYSDGQNTLEELWEAAKTMGYRYLAVT-- 372
Query: 349 EQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSE--RGLECCLR--GKLDMQD 398
+ R+ G S ++ + E G E + G LD D
Sbjct: 373 DHSPAVRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGAEVDIHPDGTLDYPD 426
>4dej_A Glutathione S-transferase related protein; transferase-like
protein, transcription regulation; 2.90A {Idiomarina
loihiensis}
Length = 231
Score = 28.9 bits (65), Expect = 5.0
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 7/66 (10%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS---KKYQNLVRW 183
E + + + + S+VD + L R + + + + ++
Sbjct: 130 ELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLW----RLPAYGIDLEGQGAKEIKQY 185
Query: 184 FNSLSA 189
L
Sbjct: 186 MVRLFE 191
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 28.8 bits (64), Expect = 5.4
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 16/92 (17%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS-------KKYQN 179
+ + + + + RR F+ G L++ D ++ L K ++
Sbjct: 156 DEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKL----NIIKVAAKKYRDFDIPAEFSG 211
Query: 180 LVRWFNSLSA--EYSDSL---DEVTATYVSNR 206
+ R+ ++ A E++ + E+ TY +
Sbjct: 212 VWRYLHNAYAREEFTHTCPEDKEIENTYANVA 243
>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for
structural genomics of infectious diseases, csgid,
oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica
subsp} PDB: 1g7o_A
Length = 218
Score = 28.8 bits (64), Expect = 5.8
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186
+ + +DK + + V LS DI ++ L + + + + ++
Sbjct: 149 KIGDDLRLLDKLIVQPNAV-NGELSEDDIHLFPLL----RNLTLVAGIHWPTKVADYRDN 203
Query: 187 LSAEYSDSL 195
++ + +L
Sbjct: 204 MAKQTQINL 212
>3lyp_A Stringent starvation protein A; structural genomics,
GST-superfamily, SSPA, stringent starva protein A
homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB:
3mdk_A
Length = 215
Score = 28.4 bits (64), Expect = 6.3
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSL--RKSKKYQNLVRWF 184
E + T V + F + S+VD + L R L ++ + L+ +
Sbjct: 131 ELRESLTGVSPLFADKPFFLSEEQSLVDCCLLPILW----RLPVLGIELPRQAKPLLDYM 186
Query: 185 NSLSA 189
A
Sbjct: 187 ERQFA 191
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 28.9 bits (64), Expect = 6.9
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 535 NLNLMEWDKLWTINKKIIDPVCPR--HTAV-IEDRRVLL 570
+ + T+ KK+ P+ R I R++L+
Sbjct: 574 KYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLI 612
>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET:
CIT; 2.02A {Yersinia pestis}
Length = 213
Score = 28.4 bits (64), Expect = 7.1
Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 7/66 (10%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKS---KKYQNLVRW 183
+ + F + S+VD + L R L + L +
Sbjct: 131 QLREELLSIAPVFNETPFFMSEEFSLVDCYLAPLLW----RLPVLGIEFTGAGSKELKGY 186
Query: 184 FNSLSA 189
+
Sbjct: 187 MTRVFE 192
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding,
lactic acid bacteria, DNA binding protein; 2.70A
{Lactococcus lactis} SCOP: a.25.1.1
Length = 182
Score = 27.9 bits (62), Expect = 8.5
Identities = 5/78 (6%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 289 DDTNPAKESNEFVDNLLKDIETLGIKYETV---------TYTSDYFPDLMEMAENLIRQG 339
D + +++ + D + + + +L +IR
Sbjct: 103 DPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVVELYGYNLQVIRNL 162
Query: 340 KAYVDDTPREQMQKERMD 357
+ + + ++ +
Sbjct: 163 AGDLGKSVADFHDEDEDN 180
>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase,
dehydroascorbate reductase, reductase; 1.70A {Homo
sapiens} PDB: 3q19_A* 3qag_A*
Length = 239
Score = 28.1 bits (63), Expect = 9.6
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 127 EFENACTYVDKYLERR--TFVVGHSLSIVDIAIWSALAGTGQRWDSLRK---SKKYQNLV 181
+ +++ LE + TF G S+S++D +W +R D L
Sbjct: 146 ALRQEFSNLEEILEYQNTTFFGGTSISMIDYLLWPWF----ERLDVYGILDCVSHTPALR 201
Query: 182 RWFNSL 187
W +++
Sbjct: 202 LWISAM 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,907,408
Number of extensions: 742912
Number of successful extensions: 1788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1693
Number of HSP's successfully gapped: 135
Length of query: 758
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 657
Effective length of database: 3,881,772
Effective search space: 2550324204
Effective search space used: 2550324204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)