RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043341
(758 letters)
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 253 bits (646), Expect = 2e-78
Identities = 133/321 (41%), Positives = 190/321 (59%), Gaps = 6/321 (1%)
Query: 239 EVDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESN 298
+ DL + V RF PEP+GYLHIGH+K+ LN AQ Y+GQ +RFDDTNP KE
Sbjct: 9 DEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDI 68
Query: 299 EFVDNLLKDIETLGIKYETVT-YTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKER-- 355
E+V+++ D+E LG + Y+SDYF L A LI +G AYVD+ EQ+++ R
Sbjct: 69 EYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGT 128
Query: 356 --MDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNP 413
G S R+ S+EEN+ L+++M AG + CLR K+DM P +RDPV YR
Sbjct: 129 LTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKF 188
Query: 414 IPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV-RKVHI 472
HH+ G+K+ +YP YDF DA EGITH+L + E+ D Y + +++ +
Sbjct: 189 AEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQ 248
Query: 473 YEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGA 532
YEFSRLN+ YT++SKRKL V + V+GWDDPR PT+ G+ RRG ++ +F G
Sbjct: 249 YEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGV 308
Query: 533 SKNLNLMEWDKLWTINKKIID 553
+K N +E L + ++ ++
Sbjct: 309 TKQDNTIEMASLESCIREDLN 329
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 185 bits (470), Expect = 2e-53
Identities = 76/318 (23%), Positives = 121/318 (38%), Gaps = 40/318 (12%)
Query: 250 VRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIE 309
V R AP P+G H+G + AL N +A+R G+ IVR +DT+ A+ + +L ++
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 310 TLGIKYET---------VTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIE 360
LG+ Y+ S+ P + AE L+++G AY E++++ R +
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 361 SKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDP---NKSLRDPVYYRCNPIPHH 417
R +I + RG +R K+ LR V Y IP
Sbjct: 122 YDGRARNIPPEEAEERA-----RRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV 176
Query: 418 RIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRKVHIYEFSR 477
+ K YPTY A D G+T +R+ E+ + + G Y
Sbjct: 177 -VLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235
Query: 478 L-NMVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEALIQFILEQGASKN- 535
L N T +SKRK ++ G L EAL ++ G S
Sbjct: 236 LRNPDKTKISKRK----------------SHTSLDWYKAEGFLPEALRNYLCLMGFSMPD 279
Query: 536 ----LNLMEWDKLWTINK 549
L E+ + +T +
Sbjct: 280 GREIFTLEEFIQAFTWER 297
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 164 bits (415), Expect = 3e-46
Identities = 61/318 (19%), Positives = 109/318 (34%), Gaps = 37/318 (11%)
Query: 249 KVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDI 308
+ RFAP PSG LH G AAL + A+ QG+ +VR +D +P +E + +L+ +
Sbjct: 2 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 61
Query: 309 ETLGIKYETVTYTSDY-FPDLMEMAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS 367
E G+ ++ E L QG +Y R ++Q
Sbjct: 62 EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG----------- 110
Query: 368 IEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYP 427
++ +R + + LR ++ I +
Sbjct: 111 ---IYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLF 167
Query: 428 TYDFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGVRK-VHIYEFSRLNMVYTLLS 486
Y+ A D +G+T +R ++ + + + + G + +I+ LN LS
Sbjct: 168 AYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS 227
Query: 487 KRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLLVEA-LIQFILEQGASKNLNLMEWD-KL 544
K+ + DPR + + G EA F +EQ +++ K
Sbjct: 228 KQNHAPALP------KGDPRPVLIAALQFLGQQAEAHWQDFSVEQ-------ILQSAVKN 274
Query: 545 WTINKKIIDPVCPRHTAV 562
W + P V
Sbjct: 275 WRLTA------VPESAIV 286
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
C-terminal (anticodon-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 128 bits (322), Expect = 2e-34
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 17/201 (8%)
Query: 557 PRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQL--- 613
PR AVI+ V L + + + + +P H G + ++ IWID AD +
Sbjct: 2 PRAMAVIDP--VKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEAN 59
Query: 614 -----ISANEEITLMDWGNAIVKEISRDQDGNVTQLSGFLHLE------GSVKNTKLKLT 662
+ +E+ L + + + +D +GN+T + + + K +
Sbjct: 60 KQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIH 119
Query: 663 WLPETNELVNLTLVGFDYLITKKKLEEGEDFLDVLNPCTRFETAAIGDSNMRNLKRGEIL 722
W+ + + + + +D L + +DFL V+NP + + ++++ G+
Sbjct: 120 WVSAAHA-LPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAF 178
Query: 723 QLERKGYFRCDVPFTRSSKPV 743
Q ER+GYF D + + KPV
Sbjct: 179 QFEREGYFCLDSRHSTAEKPV 199
>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 118
Score = 48.8 bits (116), Expect = 1e-07
Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 108 EAGEIDEWLDYTPVFSSGSEFENACTYVDKYLERRTFVVG-HSLSIVDIAIWSAL----- 161
++ + +W + + ++ L TF+V + D+ ++
Sbjct: 23 QSAQAAQWES----VLKSGQIQPHLDQLNLVLRDNTFIVSTLYPTSTDVHVFEVALPLIK 78
Query: 162 AGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
D Y++++RW + +
Sbjct: 79 DLVASSKDVKSTYTTYRHILRWIDYMQN 106
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 45.9 bits (107), Expect = 9e-06
Identities = 30/266 (11%), Positives = 66/266 (24%), Gaps = 25/266 (9%)
Query: 248 GKVRLRFAPEPSGYLHIGHSKAALL-----NQYFAQRYQGQLIVRFD-----DTNPAKES 297
K + PSGY+H+G+ + + + Y+ + I +D P
Sbjct: 18 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVP 77
Query: 298 NEFVDNLLKDIETLGIKYETVTYTSDYFPDLMEMAENLI------RQGKAYVDDTPREQM 351
E+ D L I + + +++F E + +
Sbjct: 78 QEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEE 137
Query: 352 QKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRC 411
+ + + + + + + C + + + V Y+C
Sbjct: 138 IRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKC 197
Query: 412 NPIPHHRIGSKYKVYPTYD--------FACPFVDAKEGITHALRSSEYHDRNAQYYRIQE 463
+ + G H + S Y +
Sbjct: 198 PEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYG 257
Query: 464 DLGVRKVHIYEFSRLNMVYTLLSKRK 489
+ YEF + +S K
Sbjct: 258 KEAPLSLM-YEFVGIKGQKGKMSGSK 282
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 38.6 bits (89), Expect = 4e-04
Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 22/110 (20%)
Query: 100 NFYGQNAYEAGEIDEWLD-YTPVFSSGSEFE-------------------NACTYVDKYL 139
+ G E +D +D S E + +D YL
Sbjct: 1 DLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYL 60
Query: 140 ERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
R +++G S++ D + LV + A
Sbjct: 61 GGREWLIGMSVTWADFYWEICSTTLLVFKP--DLLDNHPRLVTLRKKVQA 108
>d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor
1-gamma {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 144
Score = 37.6 bits (86), Expect = 0.002
Identities = 11/63 (17%), Positives = 26/63 (41%)
Query: 127 EFENACTYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNS 186
+ + L+ T++ ++S+ D+ S + ++ +VRWFN+
Sbjct: 60 AVDKIVDIFENRLKNYTYLATENISLADLVAASIFTRYFESLFGTEWRAQHPAIVRWFNT 119
Query: 187 LSA 189
+ A
Sbjct: 120 VRA 122
>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 132
Score = 36.7 bits (84), Expect = 0.002
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 102 YGQNAYEAGEIDEWLD--------YTPVFSSGSE-------------FENACTYVDKYLE 140
YG++ EA +D D Y + + E + T + +
Sbjct: 2 YGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQG 61
Query: 141 RRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+TF+VG +S D + L + + L + LSA
Sbjct: 62 GKTFIVGDQISFADYNLLDLL--LIHEVLAPGCLDAFPLLSAYVGRLSA 108
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus),
(a1-4) [TaxId: 10090]}
Length = 143
Score = 33.5 bits (76), Expect = 0.028
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 25/113 (22%)
Query: 100 NFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC-------------TYVDKY 138
N YG++ E ID + D + + +K
Sbjct: 1 NLYGKDLKERVRIDMYADGTQDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKI 60
Query: 139 LER--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
L+ F+VG+ LS DI + A+ + + + L + +S
Sbjct: 61 LKDHGEAFLVGNQLSWADIQLLEAILMVEELSAPVL--SDFPLLQAFKTRISN 111
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 133
Score = 33.4 bits (76), Expect = 0.035
Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 20/106 (18%)
Query: 102 YGQNAYEAGEIDEWLD--------YTPVFSSGSEFENACTYV----------DKYLERRT 143
G+ E D + + + + ++ ++L +R
Sbjct: 2 CGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRP 61
Query: 144 FVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+ G ++ VD + L + + NL +
Sbjct: 62 WFAGDKVTYVDFLAYDILDQY--HIFEPKCLDAFPNLKDFLARFEG 105
>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes
sloani pacificus) [TaxId: 6634]}
Length = 127
Score = 32.4 bits (73), Expect = 0.057
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 26/112 (23%)
Query: 102 YGQNAYEAGEIDEWLD---------YTPVFSSGSE---------------FENACTYVDK 137
G+ + E +DE + F+ + +
Sbjct: 2 DGKTSLEKYRVDEITETLQDIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVS 61
Query: 138 YLERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
F VG+S+++ D+ + AL + L K +V ++
Sbjct: 62 NGGGDGFFVGNSMTLADLHCYVALEVPLKHTPELL--KDCPKIVALRKRVAE 111
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 32.3 bits (73), Expect = 0.083
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 20/106 (18%)
Query: 102 YGQNAYEAGEIDEWLD--------YTPVFSSGSEFENACTYV----------DKYLERRT 143
G+ E +D + + + S + Y+ ++L R+
Sbjct: 2 CGETEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPAYLEQLPGKLRQLSRFLGSRS 61
Query: 144 FVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+ VG L+ VD + L R + NL ++ A
Sbjct: 62 WFVGDKLTFVDFLAYDVLDQQ--RMFVPDCPELQGNLSQFLQRFEA 105
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 31.9 bits (72), Expect = 0.11
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 349 EQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVY 408
E+ QK DG S + + + W MI G R + L ++ K P +
Sbjct: 15 EEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPF 74
Query: 409 YRC-NPIPHHRI 419
R I + +
Sbjct: 75 VRFVTKINMNGV 86
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 133
Score = 30.8 bits (69), Expect = 0.23
Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 20/106 (18%)
Query: 102 YGQNAYEAGEIDEWLD--------YTPVFSSGSEFENACTYV----------DKYLERRT 143
G++ E D + + + Y+ ++L ++
Sbjct: 2 CGESEKEQIREDILENQFMDSRMQLAKLCYDPDFEKLKPEYLQALPEMLKLYSQFLGKQP 61
Query: 144 FVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+ +G ++ VD + L + + NL + +
Sbjct: 62 WFLGDKITFVDFIAYDVLERN--QVFEPSCLDAFPNLKDFISRFEG 105
>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 127
Score = 30.8 bits (69), Expect = 0.23
Identities = 13/111 (11%), Positives = 27/111 (24%), Gaps = 24/111 (21%)
Query: 102 YGQNAYEAGEIDEWLD--------YTPVFSSGSEF-------ENACTYVDKYL------- 139
G +E +ID +D V + + YL
Sbjct: 2 CGATPWEDLQIDIVVDTINDFRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTV 61
Query: 140 -ERRTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+ + L+ D+ + Y L ++++A
Sbjct: 62 KDNDGHLALGKLTWADVYFAGITDYMNYMVKR-DLLEPYPALRGVVDAVNA 111
>d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens),
(a1-1) [TaxId: 9606]}
Length = 140
Score = 30.5 bits (68), Expect = 0.29
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 25/111 (22%)
Query: 102 YGQNAYEAGEIDEWLD--------YTPVFSSGSEFENACT-------------YVDKYLE 140
+G+N E ID +++ + + +K L
Sbjct: 2 FGKNLKERTLIDMYVEGTLDLLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILR 61
Query: 141 R--RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
++F+VG+ LS+ D+ + + ++ ++ + L + LS
Sbjct: 62 GHGQSFLVGNQLSLADVILLQTILALEEKIPNIL--SAFPFLQEYTVKLSN 110
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 30.8 bits (69), Expect = 0.30
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 347 PREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406
+ +M + + IESK +I + + G + K+ + P+K
Sbjct: 4 GKRRMDTDVVKLIESKH-EVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKS 62
Query: 407 VYYRCNPIPHH 417
H
Sbjct: 63 PSIGFMNKIFH 73
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke
(Schistosoma haematobium) [TaxId: 6185]}
Length = 123
Score = 30.4 bits (68), Expect = 0.31
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 24/111 (21%)
Query: 103 GQNAYEAGEIDEWLD--------YTPVFSSGSEFENAC-------------TYVDKYLER 141
G E +++ + Y E + + + L+
Sbjct: 2 GGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKA 61
Query: 142 RT--FVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSAE 190
T VG +++ D+ + + + D + KY + + +L A
Sbjct: 62 STGKLAVGDKVTLADLVLIAVID-HVTDLDKEFLTGKYPEIHKHRENLLAS 111
>d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides
polygyrus [TaxId: 6339]}
Length = 129
Score = 30.4 bits (68), Expect = 0.32
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 29/114 (25%)
Query: 103 GQNAYEAGEIDEWLD--------YTPVFSSGSEF----------ENACTYVDKYLER--- 141
G +E+ ID D + + F + K+L
Sbjct: 2 GATPFESALIDSLADAYTDYRAEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITK 61
Query: 142 ------RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
F+VG +S VD+ + +A R + + + +
Sbjct: 62 FLKKNSSGFLVGDKISWVDLLVAEHVADMTNRVPEYI--EGFPEVKAHMERIQQ 113
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 29.7 bits (66), Expect = 0.68
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 20/111 (18%)
Query: 97 RVGNFYGQNAYEAGEIDEWLD--------YTPVFSSGSEFENACTYVD------KYLER- 141
R N G+ E +D + + S + Y++ K
Sbjct: 1 RKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMF 60
Query: 142 ---RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
++ G L+ VD + L R + ++ NL + A
Sbjct: 61 LGKFSWFAGEKLTFVDFLTYDILDQN--RIFDPKCLDEFPNLKAFMCRFEA 109
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 29.9 bits (66), Expect = 1.0
Identities = 37/278 (13%), Positives = 76/278 (27%), Gaps = 26/278 (9%)
Query: 248 GKVRLRF-APEPSGYLHIGHSKAALLNQYFAQ--RYQGQLIVR---FDDT-NPAKESNEF 300
G V + + P+ LH+GH + L A+ Y G+ ++ DDT A E+
Sbjct: 7 GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFA 66
Query: 301 VDN--LLKDIETLGIKYETVTYTSDYFPDLMEMAENLIRQGKAYVDDTPREQMQKERMDG 358
+ + L D + + Y + E + I + ++ + +
Sbjct: 67 LRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLA 126
Query: 359 IESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVY--------YR 410
+ + ++ +W+ I + + +
Sbjct: 127 QMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVI 186
Query: 411 CNPIPHHRIGSKYKVYPTY---DFACPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLGV 467
+ + TY D A F K GI LR + YY
Sbjct: 187 PGLEDPFFVLLRSNGTATYYAKDIAFQF--WKMGILEGLR---FRPYENPYYPGLRTSAP 241
Query: 468 R-KVHIYEFSRLNMVYTLLSKRKLLWFVQNGKVDGWDD 504
+ + + V + + G+
Sbjct: 242 EGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPA 279
>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens),
(a1-1) [TaxId: 9606]}
Length = 142
Score = 28.6 bits (63), Expect = 1.5
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 25/111 (22%)
Query: 102 YGQNAYEAGEIDEWLD---------YTPVFSSGSEFENAC-----TYVDKYLER------ 141
YG++ E ID +++ E + ++Y
Sbjct: 2 YGKDIKERALIDMYIEGIADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLK 61
Query: 142 ---RTFVVGHSLSIVDIAIWSALAGTGQRWDSLRKSKKYQNLVRWFNSLSA 189
+ ++VG+ LS DI + L + SL + L +S
Sbjct: 62 SHGQDYLVGNKLSRADIHLVELLYYVEELDSSLI--SSFPLLKALKTRISN 110
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 28.5 bits (63), Expect = 1.9
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 1/68 (1%)
Query: 350 QMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYY 409
+ + + M S R + + + G E L +Q P+
Sbjct: 4 RREMDYMRLCNST-RKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSI 62
Query: 410 RCNPIPHH 417
H
Sbjct: 63 GFCNRILH 70
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 29.2 bits (64), Expect = 2.0
Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 18/214 (8%)
Query: 256 PEPSGYLHIGHSKAALLNQYFAQRYQGQLIVRFDDTNPAKESNEFVDNLLKDIETLGIKY 315
P +G LH+GH LN + IVR+ K F + +T G+
Sbjct: 57 PYANGNLHMGH----ALN-----KILKDFIVRY------KTMQGFYAPYVPGWDTHGLPI 101
Query: 316 ETVTYTSDYFPDLMEMAENL--IRQGKAYVDDTPREQMQKERMDGIESKCRNNSIEENMK 373
E M AE ++ + ++ ++ + G + E
Sbjct: 102 EQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEA 161
Query: 374 L-WKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFA 432
+ +++GL + + ++S + ++ P + +
Sbjct: 162 AQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFAS 221
Query: 433 CPFVDAKEGITHALRSSEYHDRNAQYYRIQEDLG 466
V + + + + Y + D G
Sbjct: 222 ISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRG 255
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 28.1 bits (62), Expect = 2.5
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 441 GITHALRSSEYHDRNAQYYRIQEDLGV---RKVHIYEFSRL-NMVYTLLSKRKLLWFVQN 496
+ H+L SSEY R Q + LG R+V + E ++V +R +
Sbjct: 10 NVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEI 69
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2
{Crab-eating macaque (Macaca fascicularis) [TaxId:
9541]}
Length = 161
Score = 27.9 bits (62), Expect = 2.7
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 133 TYVDKYLERRTFVVGHSLSIVDIAIWSALAGTGQRW----DSLRKSKKYQNLVRWFN 185
+V + R F+ G ++ D+A++ L R D+ ++ ++ W+
Sbjct: 101 KWVAAVGKDRPFMGGQKPNLADLAVYGVL-----RVMEGLDAFDDLMQHTHIQPWYL 152
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 27.9 bits (61), Expect = 5.2
Identities = 32/264 (12%), Positives = 58/264 (21%), Gaps = 42/264 (15%)
Query: 256 PEPSGYLHIGHSKAALLNQYFA--QRYQG----------------QLIVRFDDTNPAKES 297
P +G +H+GH + + QR +G L + P +
Sbjct: 11 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMI 70
Query: 298 NEFVDNLLKDIETLGIKYETVTYTSDYFPDLME-------MAENLIRQGKAYVDDTPREQ 350
E D I Y+ T + I+ P +
Sbjct: 71 GEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG 130
Query: 351 MQKERMDGIESKCRNNSIEENM-----KLWKEMIAGSERG----------LECCLRGKLD 395
M + E+ + + A + G E G
Sbjct: 131 MFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQ 190
Query: 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRN 455
+ P Y + + K G + + D
Sbjct: 191 WDISRDAPYFGFEIPNA--PGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDST 248
Query: 456 AQYYRIQEDLGVRKVHIYEFSRLN 479
A+ Y V ++ + L
Sbjct: 249 AELYHFIGKDIVYFHSLFWPAMLE 272
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 27.7 bits (61), Expect = 6.2
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 322 SDYFPDLME-MAENLIRQGKAYVDDTPREQMQKERMDGIESKCRNNS-----IEENMKLW 375
+D ++ +A+ + + + E D S I+EN + W
Sbjct: 292 TDVAEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKW 351
Query: 376 KEMIA 380
KE A
Sbjct: 352 KERAA 356
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain
{Escherichia coli [TaxId: 562]}
Length = 58
Score = 24.9 bits (55), Expect = 7.1
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 304 LLKDIETLGIKYETVTYTSDYFPDLMEMAEN-LIRQGKA-YVDDTPREQMQKER 355
LL + LG + V + Y A N L+ QGKA E + R
Sbjct: 5 LLDKVANLGSLGDQVNVKAGY-------ARNFLVPQGKAVPATKKNIEFFEARR 51
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 26.6 bits (58), Expect = 7.5
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 351 MQKERMDGIESK---CRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPV 407
+Q+E + S +N+ W + G + + L+ KL ++ P+ P
Sbjct: 14 LQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPP 73
Query: 408 YYRCNPIPHH 417
+ H
Sbjct: 74 VVKFTTPCWH 83
>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster
(Panulirus interruptus) [TaxId: 6735]}
Length = 263
Score = 27.0 bits (60), Expect = 7.8
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 396 MQDPNKSLRDPVYYRCNPIPHHRIGSKYKVY 426
M+ + RDP ++R H + + +K +
Sbjct: 233 MEHFETATRDPSFFRL----HKYMDNIFKKH 259
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
oxidase HemN {Escherichia coli [TaxId: 562]}
Length = 441
Score = 27.3 bits (59), Expect = 8.0
Identities = 20/173 (11%), Positives = 48/173 (27%), Gaps = 12/173 (6%)
Query: 291 TNPAKESNEFVDNLLKDIETLGIKYETVTYTSDYF----PDLMEMAENLIRQGKAYVDDT 346
T ++++++D L ++I + + ++ P + + R K
Sbjct: 73 TRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN-KAQISRLMKLL---- 127
Query: 347 PREQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDP 406
RE Q I + IE ++ + A L ++ +
Sbjct: 128 -RENFQFNADAEISIEVDPREIELDV--LDHLRAEGFNRLSMGVQDFNKEVQRLVNREQD 184
Query: 407 VYYRCNPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHALRSSEYHDRNAQYY 459
+ + H R + P + R +E + +
Sbjct: 185 EEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVF 237
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas
fluorescens [TaxId: 294]}
Length = 346
Score = 27.1 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 151 SIVDIAIWSALAGTGQRWDSLRKSKKYQNLV-RWFNSLSAEYS 192
S+ D I A+A +G D S QN+V FN ++AE
Sbjct: 4 SLADFPIGVAVAASGGNADIF-TSSARQNIVRAEFNQITAENI 45
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 27.3 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 256 PEPSGYLHIGHSKAALLNQYFAQRYQ 281
P +G +H GH A L RY
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYL 36
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 26.2 bits (57), Expect = 8.5
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 349 EQMQKERMDGIESKCRNNSIEENMKLWKEMIAGSERGLECCLRGKLDMQDPNKSLRDPVY 408
+++ GI +K + E+M W+ I G + + L +L + ++ P
Sbjct: 14 CDLKENNYKGITAKP----VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPV 69
Query: 409 YRC-NPIPHHRIGSKYKVYPTYDFACPFVDAKEGITHA 445
+ H + T F+D E
Sbjct: 70 VKFITIPFHPNV-----DPHTGQPCIDFLDNPEKWNTN 102
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 26.8 bits (58), Expect = 8.9
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 554 PVCPRHTAVIEDRRVLLTLTDGPDKPFVRIIPRHKKYEGAGEKATTYTKRIWIDHADAQ 612
PV + V LT DGP +++ K+ +AT + + +A
Sbjct: 2 PVGTPILQCTQPGLVALTYDDGPFTFTPQLLDILKQN---DVRATFFVNGNNWANIEAG 57
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 27.3 bits (59), Expect = 9.4
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 22/114 (19%)
Query: 256 PEPSGYLHIGHSKAALLNQYFA--QRYQG----------------QLIVRFDDTNPAKES 297
P PSG LH+GH K + A +R QG + +P +
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWT 101
Query: 298 NEFVDNLLKDIETLGIKY----ETVTYTSDYFPDLMEMAENLIRQGKAYVDDTP 347
+ + + +GI Y E T +Y+ + + +G AY
Sbjct: 102 YANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGL 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0508 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,885,717
Number of extensions: 140178
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 44
Length of query: 758
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 666
Effective length of database: 1,144,436
Effective search space: 762194376
Effective search space used: 762194376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)