BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043342
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 64/99 (64%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A G+ D + IENG VN DS+GR PLH+A GH I +LL+SK ADVNAKD++G+
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
TPLHYA + I + L+ + AD+ KD+DG +P H
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 110
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 65/103 (63%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+EG + + I G VN +DS+GR PLH+A GH I +LL+SK ADVNAKD
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
++G+TPLHYA + I + L+ + AD+ D+DG +P +
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+EG + + I G VN +DS+GR PLH+A GH I +LL+SK ADVN D
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
++G+TPL A E I + L KQ
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A G+ D + IENG VN DS+GR PLH A + GH + +LL+SK ADVNAKD++G+
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
TPLH+A + + + L+ + AD+ KD+DG +P H
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 108
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 62/100 (62%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G + + I G VN +DS+GR PLH A + GH + +LL+SK ADVNAKD
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
++G+TPLH+A + + + L+ + AD+ D+DG +P
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G + + I G VN +DS+GR PLH A + GH + +LL+SK ADVN D
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQ 330
++G+TPL A E + + L KQ
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 62/99 (62%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A G+ D + +ENG N DS+GR PLH+A + GH I +LL+SK AD NAKD++G+
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
TPLHYA + I + L+ + AD KD+DG +P H
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 110
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 61/103 (59%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G + + + G N +DS+GR PLH+A + GH I +LL+SK AD NAKD
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
++G+TPLHYA + I + L+ + AD D+DG +P +
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G + + + G N +DS+GR PLH+A + GH I +LL+SK AD N D
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
++G+TPL A E I + L KQ
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 282 AVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
A + G+ + + L+ AD NA D++G+TPLHYA + I + L+ + AD KD+DG
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 342 NSPCHVC 348
+P H
Sbjct: 71 RTPLHYA 77
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 62/99 (62%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A G+ D + +ENG VN DS+G+ PLH A + GH + +LL+S+ AD NAKD++G+
Sbjct: 12 AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
TPLH A + + + L+ Q AD KD+DG +P H+
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G + + + G N +DS+G+ PLH A + GH + +LL+S+ AD NAKD
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
++G+TPLH A + + + L+ Q AD D+DG +P +
Sbjct: 101 SDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G + + + G N +DS+G+ PLH A + GH + +LL+S+ AD N D
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
++G+TPL A E + + L KQ
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN +D +G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNAKD +G TPLH A I + L+K AD+ KD DG +P H+
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 120
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AREG ++ + ++ G VN +D +G PLH A GHL I E+L+ ADVNAKD
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AREG ++ + ++ G VN +D +G PLH A GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
G+T ++ E +A+ L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 56/99 (56%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
AR G D + + NG VN +D +G PLH A GHL I E+L+ ADVNAKD +G
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
TPLH A I + L+K AD+ KD DG +P H+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 57/99 (57%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AREG ++ + ++ G VN +D +G PLH A GHL I E+L+ ADVNAKD
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
+G TPLH A I + L+K AD+ +D G +P
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AREG ++ + ++ G VN +D +G PLH A GHL I E+L+ ADVNA+D
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 306 NEGQTPLHYAVVCDREAIAQFLVK 329
G+TP A+ E IA+ L K
Sbjct: 132 KFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G ++ + +E G VN +D GR PLH A GHL + +LL+ ADVNAKD
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
G+TPLH A + + L++ AD+ KD +G +P H+
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
GR PLH A GHL + +LL+ ADVNAKD G+TPLH A + + L++ AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 335 GMKDNDGNSPCHVC 348
KD +G +P H+
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G ++ + +E G VN +D GR PLH A GHL + +LL+ ADVNAKD
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
G+TPLH A + + L++ A
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 56/99 (56%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
AR G D + + NG VN +D +G PLH A GHL I E+L+ ADVNAKD +G
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
TPLH A I + L+K AD+ KD DG +P H+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 57/99 (57%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AREG ++ + ++ G VN +D +G PLH A GHL I E+L+ ADVNAKD
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
+G TPLH A I + L+K AD+ +D G +P
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AREG ++ + ++ G VN +D +G PLH A GHL I E+L+ ADVNA+D
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 306 NEGQTPLHYAVVCDREAIAQFLVK 329
G+TP A+ E IA+ L K
Sbjct: 132 KFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D++G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G TPLH A I + L+K AD+ DNDG++P H+
Sbjct: 70 GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN D G PLH A GHL I E+L+ ADVNA D
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
N+G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G VN D++G PLH A GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
G+T ++ E +A+ L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D G+ PLH A +GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G TPLH A + I + L+K AD+ D G +P H+
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A +G ++ + +++G VN D G PLH A GHL I E+L+ ADVNA D
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 TYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN D+ G PLH A D GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
ADVNA DN G TPLH A I + L+K AD+ KD +G +P H+ D
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD 123
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G ++ + ++ G VN D+ G PLH A D GHL I E+L+ ADVNAKD
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
EG TPLH A I + L+K AD+ +D G + +
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G VN +D EG PLH A GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN RD G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNAKD+ G TPLH A I + L+K AD+ D+ G +P H+
Sbjct: 70 GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLA 120
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN +DS G PLH A RGHL I E+L+ ADVNA D
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+ G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G ++ + ++NG VN DS G PLH A RGHL I E+L+ ADVNA+D
Sbjct: 84 LHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D+ G PLH A GHL I E+L+
Sbjct: 11 GSDLGRKLLEA-ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM 355
ADV+A D G TPLH A I + L+K AD+ D+DG +P H+ + W ++
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA-AKWGYL 126
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G V+ D G PLH A GHL I E+L+ ADVNA D
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
++G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN DS+G PLH A G+L I E+L+ ADVNA+D
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D+ G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G TPLH A + I + L+K AD+ D G++P H+
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G VN D G PLH A GHL I E+L+ ADVNA D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
G TPLH A + I + L+K AD+ +D G +
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G VN D+ G PLH A GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D+ G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G TPLH A + I + L+K AD+ D G++P H+
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G VN D G PLH A GHL I E+L+ ADVNA D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
G TPLH A + I + L+K AD+ +D G +
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G VN D+ G PLH A GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 51/99 (51%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
AR G D + + NG N D GR PLH A GHL I E+L+ ADVNA D G
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
TPLH A I + L+K AD+ KD G +P ++
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLA 108
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + + NG VN D+ G PLH A GHL I E+L+ ADVNAKD
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
G TPL+ A I + L+K AD+ +D G + +
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 141
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++ G VN +D+ G PL+ A GHL I E+L+ ADVNA+D
Sbjct: 72 LHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
G+T ++ E +A+ L
Sbjct: 132 KFGKTAFDISIDIGNEDLAEIL 153
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
+L++ AD NA D+ G+TPLH A I + L++ AD+ D +G +P H+ S
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAAS 77
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D+ G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G TPLH A I + L+K AD+ D G++P H+
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G ++ + ++NG VN D G PLH A RGHL I E+L+ ADVNA D
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G ++ + ++ G VN D+ G PLH A D GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
G+T ++ E +A+ L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D +G PLH A D HL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA DN+G TPLH A + I + L+K AD+ +D G + +
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
+++G VN D++G PLH A GHL I E+L+ ADVNA+D G+T ++
Sbjct: 66 LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 321 EAIAQFLVKQN 331
E +A+ L K N
Sbjct: 126 EDLAEILQKLN 136
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D+ G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D+ G TPL A + I + L+K AD+ D +G++P H+
Sbjct: 70 GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN D G PL A GHL I E+L+ ADVNA D
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
EG TPLH A + I + L+K AD+ +D G + +
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
++NG VN D EG PLH A GHL I E+L+ ADVNA+D G+T ++
Sbjct: 99 LLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
Query: 321 EAIAQFLVKQN 331
E +A+ L K N
Sbjct: 159 EDLAEILQKLN 169
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D G PLH V+ GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
ADVNA D G TPLH A I + L+K AD+ D G +P H+ D
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED 123
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H G ++ + ++ VN D G PLH A RGHL I E+L+ ADVNA D
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++ G VN D +G PLH A + GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G TPLH A I + L+K AD+ KD++G +P H+
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN D+ G PLH A GHL I E+L+ ADVNAKD
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+ G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN +D G PLH A +RGHL I E+L+ ADVNA+D
Sbjct: 84 LHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISINNGNEDLAEILQKLN 169
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + I NG VN D+ G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADV+A D G TPLH A + I + L+K AD+ D G++P H+
Sbjct: 70 GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + +++G V+ D G PLH A GHL I E+L+ ADVNA D
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
G TPLH A I + L+K AD+ +D G +
Sbjct: 111 MTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++ G VN D G PLH A D GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQ 325
G+T ++ E +A+
Sbjct: 144 KFGKTAFDISIDNGNEDLAK 163
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D +G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA+DN G TPLH A + I + L+K AD+ +D G + +
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G ++ + ++ G VN D+ G PLH A RGHL I E+L+ ADVNA+D
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN DS G PLH A DRGHL + E+L+ ADVNA D
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+ G TPLH A I + L+K AD+ +D G + +
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D+ G TPLH A + + L+K AD+ D++G +P H+
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA 120
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN D G PLH A + GHL I E+L+ ADVNA+D
Sbjct: 84 LHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 137 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYID 191
N+V+L+LYALYK ATEGPC+ P+P + +AKW AW LG++P E A Q Y+D
Sbjct: 36 NEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVD 90
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + NG VN D G PLH A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA N G+TPLH A D I + L+K AD+ +D G + +
Sbjct: 70 GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN + GR PLH A HL I E+L+ ADVNA+D
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVK 329
G+T ++ E +A+ L K
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D +G PLH A GH I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA+D +G TPLH A I + L+K AD+ +D G +P H+
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
+++G VN RD++G PLH A D GHL I E+L+ ADVNA+D G TPLH A
Sbjct: 66 LLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHVC 348
I + L+K AD+ +D G + +
Sbjct: 126 LEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++ G VN +D+ G PLH A DRGHL I E+L+ ADVNA+D
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQD 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A R G D + + NG VN D G PLH A RGHL I E+L+
Sbjct: 11 GSDLGKKLLEA-TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D+ G+TPLH A I + L++ AD+ +D G + +
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G ++ + +++G VN DS GR PLH A GHL I E+L+ ADVNA+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A R G D + + NG VN D G PLH A RGHL I E+L+
Sbjct: 11 GSDLGKKLLEA-TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA+D G+TPLH A I + L++ AD+ +D G + +
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G ++ + +++G VN RD GR PLH A GHL I E+L+ ADVNA+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN +D G PL+ A GHL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G TPLH A IA+ L+K AD+ +D G + +
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
++NG VN D+ G PLH A GHL I+E+L+ ADVNA+D G+T ++
Sbjct: 66 LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125
Query: 321 EAIAQFLVKQN 331
E +A+ L K N
Sbjct: 126 EDLAEILQKLN 136
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 52/93 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ + ++NG VN DS G PLH A GHL I E+L+ ADVNA D
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
G TPLH A + + I + L+K AD+ +D
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G DL + A A G D + + NG VN D G PLH A G L I E+L+
Sbjct: 3 GQDLGKKLLEA-AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN 61
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D+ G TPLH A I + L+K AD+ D G +P H+
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
+L++ ADVNA D+ G TPLH A + I + L+K AD+ D+ G +P H+ D
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD 82
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A +G ++ + +++G VN D G PLH A G L I E+L+ ADVNA+D
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
G T ++ +E +A+ L
Sbjct: 136 ALGLTAFDISINQGQEDLAEIL 157
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A R G D + + NG VN D G PLH A RGHL I E+L+
Sbjct: 11 GSDLGKKLLEA-TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G+TPLH A I + L++ AD+ +D G + +
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G ++ + +++G VN D GR PLH A GHL I E+L+ ADVNA+D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQN 331
G+T ++ E +A+ L K N
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G ++ + +E G VN +D GR PLH A GHL + +LL+ ADVNAKD
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
G+TPLH A + + L++ A
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
GR PLH A GHL + +LL+ ADVNAKD G+TPLH A + + L++ AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 335 GMKDNDGNSPCHV 347
KD +G +P H+
Sbjct: 62 NAKDKNGRTPLHL 74
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG VN D G PLH A HL I E+L+
Sbjct: 11 GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
ADVNA D G+TPLH + I + L+K AD+ +D G + +
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
++NG VN D+ G PLH GHL I E+L+ ADVNA+D G+T ++
Sbjct: 66 LLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 321 EAIAQFLVKQN 331
E +A+ L K N
Sbjct: 126 EDLAEILQKLN 136
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%)
Query: 253 GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
GD + +L+ +E G +N + +G LH A ++++ + LV A++N DNEG PL
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 313 HYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
H A C IA++L+ Q A +G +++G++P +
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
+ A+H + ++D + +ENG ++N D+EG PLH A G+L+I+E L+S+ A V
Sbjct: 74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 303 AKDNEGQTPL 312
A ++EG TPL
Sbjct: 134 AVNSEGDTPL 143
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
G LH A +G+ + +LL+ DVN KD +G TPLH A +E + LV+ D+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 335 GMKDNDGNSPCHVCESD 351
+ G + V + D
Sbjct: 259 EAVNKVGQTAFDVADED 275
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G + + K + G VN R +G PLH A GH I +LL++K ADVNA+
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADI 334
+G TP H A I + L + AD+
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
+G PLH A GH + L+SK ADVNA+ +G TPLH A I + L+ + AD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 334 IGMKDNDGNSPCHVCESD 351
+ + DGN+P H+ + +
Sbjct: 68 VNARSKDGNTPEHLAKKN 85
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 44/64 (68%)
Query: 137 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTEL 196
N+++L LY YK +T G C+ +PSA K R K++AW+ + + E+A ++Y+DIV+E+
Sbjct: 24 NELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEI 83
Query: 197 YPTW 200
+P W
Sbjct: 84 FPYW 87
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 245 AIHAFAREGDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
+H A++G + + + NG + VN +D G P+ WA + H+++ +LL+SK +D+N
Sbjct: 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
+DNE LH+A IA+ L+ D+ + G+SP H+
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+ G +N+RD+E LHWA G ++I+E+L++ D++A + G +PLH A +R
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190
Query: 322 AIAQFLVKQNADIGMKDNDGNSP 344
+ +++D+ +K+ +G +P
Sbjct: 191 DCVVLFLSRDSDVTLKNKEGETP 213
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
K +HA A G +D ++ G +++ + R PL A + HL + L+ A V
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQ-NADIGMKDNDGNSP 344
+ KD EG T LH A + Q+L+ D+ +D+ G +P
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 276 RAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
R+PLH A + GH++I +LV A+++ + +TPL A + ++L+K A +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 336 MKDNDGNSPCHV 347
KD +G++ H+
Sbjct: 72 PKDAEGSTCLHL 83
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+ G + GVS + R R PLH A GH NI E+L+ ADVNAKD
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADI 334
T LH+A + + + + L+K AD+
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
AR G D + + NG D G +PLH A GH + +E+L+ +A+ +
Sbjct: 10 ARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR 68
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKD 338
TPLH A I + L+K AD+ KD
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKD 97
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A EG + + +++G VN +D LHWA + H + ELL+ ADV+ +
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
+T ++ E +A+ L
Sbjct: 131 KFCKTAFDISIDNGNEDLAEIL 152
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
Q S + L LYA YK G C+ P+PS + KW+AW+ LG P +AMQ+YI +
Sbjct: 24 QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAV 83
Query: 193 VTELYPTWAAGSSLKSKRGQE 213
V +L P W + K+G+E
Sbjct: 84 VKKLDPGW--NPQIPEKKGKE 102
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 255 MDNLL-KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLH 313
M+N + K +EN + +D EG L WAV L I+E L+SK ++VN KD G+TPL
Sbjct: 47 MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106
Query: 314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
++++ ++ FL++ A++ ++ +G +P V
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA 141
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
K + G +VN +D G+ PL W++ G+ +S L+ A+VN ++ EG+TPL A
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Query: 320 REAIAQFLVKQNADIGMKDNDG 341
R I + L++ ADI +D G
Sbjct: 146 RSEIVKKLLELGADISARDLTG 167
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
+E+G +VN R+ EG PL A G I + L+ AD++A+D G T A + R
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 321 EAIAQFLVK 329
+ + + +
Sbjct: 180 QEVIKIFTE 188
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQT 310
+ GD+D + + G VN GR PLH+A D G L I E L+ K AD+NA D T
Sbjct: 16 KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 75
Query: 311 PLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
PL AV + + L+ + AD +K DG
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 281 WAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDND 340
WA+ G L+ + V+K DVN G+ PLHYA C + I +FL+ + ADI D
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 341 GNSP 344
+P
Sbjct: 73 HITP 76
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ L + G +N D PL AV GH++ +LL+SK AD K
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
+G T D +AI L
Sbjct: 104 PDGLTAFE---ATDNQAIKALL 122
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQT 310
+ GD+D + + G VN GR PLH+A D G L I E L+ K AD+NA D T
Sbjct: 11 KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 70
Query: 311 PLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
PL AV + + L+ + AD +K DG
Sbjct: 71 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 281 WAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDND 340
WA+ G L+ + V+K DVN G+ PLHYA C + I +FL+ + ADI D
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 341 GNSP 344
+P
Sbjct: 68 HITP 71
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G ++ L + G +N D PL AV GH++ +LL+SK AD K
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
Query: 306 NEGQTPLHYAVVCDREAIAQFL 327
+G T L D +AI L
Sbjct: 99 PDGLTALE---ATDNQAIKALL 117
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G D + +++G + R+++ PLH A +GH + + L+ NA N KD
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
G TPL YA + L++ A I +N GN+ H
Sbjct: 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 198 PTWAAGSSLKSKRGQE--DAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDM 255
P G ++ S+ G A+ +A + P+ + N + +H ++G
Sbjct: 73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF 132
Query: 256 DNLLKCI-ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY 314
++KC+ ++ N +D G PL +A GH + LL+ A +NA +N+G T LH
Sbjct: 133 -QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE 191
Query: 315 AVVCDREAIAQFLVKQNADI 334
AV+ + + L+ A +
Sbjct: 192 AVIEKHVFVVELLLLHGASV 211
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV 317
L K +G+ VN+ +G +PLH A G ++ LL+ A+ A++ + PLH A
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 318 CDREAIAQFLVKQNADIGMKDNDGNSP 344
+ + L+ NA KD GN+P
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTP 155
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
VN +G +PLH A + R + L+K A+ G ++ D P H+
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHL 125
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
+++G S+N +++G LH AV H+ + ELL+ A V + +T + A
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+++G V+ +D G PLH A GH ++ELLV A VN D TPLH A +
Sbjct: 66 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 125
Query: 322 AIAQFLVKQNADIGMKDNDGNSP 344
I + L++ AD K+ DGN+P
Sbjct: 126 EICKLLLQHGADPTKKNRDGNTP 148
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 250 AREGDMDNLLK-CIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSKNADVNAKDN 306
A+ GD++ + K C SVN RD EGR PLH+A +++ E L+ ADV+AKD
Sbjct: 20 AKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
G PLH A +A+ LVK A + + D +P H
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 117
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
+++G VN+ D PLH A +G I +LL+ AD K+ +G TPL
Sbjct: 99 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+++G V+ +D G PLH A GH ++ELLV A VN D TPLH A +
Sbjct: 64 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 322 AIAQFLVKQNADIGMKDNDGNSP 344
I + L++ AD K+ DGN+P
Sbjct: 124 EICKLLLQHGADPTKKNRDGNTP 146
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 250 AREGDMDNLLK-CIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSKNADVNAKDN 306
A+ GD++ + K C SVN RD EGR PLH+A +++ E L+ ADV+AKD
Sbjct: 18 AKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
G PLH A +A+ LVK A + + D +P H
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 115
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
+++G VN+ D PLH A +G I +LL+ AD K+ +G TPL
Sbjct: 97 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+++G V+ +D G PLH A GH ++ELLV A VN D TPLH A +
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 322 AIAQFLVKQNADIGMKDNDGNSP 344
I + L++ AD K+ DGN+P
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTP 144
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 250 AREGDMDNLLK-CIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSKNADVNAKDN 306
A+ GD++ + K C SVN RD EGR PLH+A +++ E L+ ADV+AKD
Sbjct: 16 AKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
G PLH A +A+ LVK A + + D +P H
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
+++G VN+ D PLH A +G I +LL+ AD K+ +G TPL
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 136 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTE 195
SND +L Y YK AT G C+ P+P L++ + KW+AW L M E A + Y+ ++
Sbjct: 30 SNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDT 89
Query: 196 LYPTW 200
L P+W
Sbjct: 90 LAPSW 94
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%)
Query: 216 ASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEG 275
A+ + A M + S GN + +H A+EG + I++GV V+ G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311
Query: 276 RAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
PLH A G++ + + L+ ADVNAK G +PLH A I L+K A
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 336 MKDNDGNSPCHVCE 349
+DG +P + +
Sbjct: 372 EVSSDGTTPLAIAK 385
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A+EG + + + + NL + G PLH GH+ ++++L+ V+A
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
G TPLH A + +FL++ AD+ K G SP H
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%)
Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
+ +H + G + + ++ G S N+ + + PLH A GH +++ L+ A VN
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
AK + QTPLH A + + L++ NA+ + G++P H+
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 120
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AREG ++ +L +E S +G PLH A G + ++ELL+ ++A NA
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
G TPLH AV + I + L+ + +G +P H+
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A++ ++ ++ G S N +G PLH A GH + LL+SK A+ N +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
G TPLH +A L+K + G +P HV
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G + + +EN + NL + G PLH A GH+ L+ K A
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+G TPLH A + +A+ L++++A +G +P HV
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G + ++N VN + + + PLH A GH N+ +LL+ NA+ N
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
G TPLH A L+++ A G +P HV
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%)
Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
+ +H ++D + + G S + G PLH A + + ++ L+ N
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
A+ +G TPLH A + L+ + A+ + + G +P H+ +
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELL 294
+H A++G D + ++NG S N S+G PL A G+++++++L
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
AR G D + + NG VN +D +G PLH A GHL I E+L+ ADVNA+D G+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 310 TPLHYAVVCDREAIAQFLVK 329
T ++ E +A+ L K
Sbjct: 70 TAFDISIDNGNEDLAEILQK 89
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
+L++ ADVNAKD +G TPLH A I + L+K AD+ +D G +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELL 294
+H AREG ++ + ++ G VN +D G+ ++D G+ +++E+L
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 249 FAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE 307
A G +D L + I S+ R D + R LHWA GH I E L+ VN KD+
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
G +PLH A R+ I + L+ + A + + +G +P H S
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+E G + + +D +H A +G+L + +L+ A N +D EG TPLH A CD E
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA--CDEE 183
Query: 322 AI--AQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
+ A+FLV Q A I +++ + +P V + +L
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLIL 220
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H G + + ++ GV VN +D G +PLH A G I + L+ K A VNA
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
+ G TPLHYA +R IA L++ A+ KD+ + H
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H A +G++ + + S N++D+EG PLH A D + ++ LV++ A + +
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 305 DNEGQTPLHYA 315
+ E +TPL A
Sbjct: 202 NKEEKTPLQVA 212
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 136 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTE 195
+N++ L+ Y+ YK ATEGPC +P R KW AW LG M EEAM Y++ + +
Sbjct: 47 TNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKK 106
Query: 196 LYPT 199
+ T
Sbjct: 107 IIET 110
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 249 FAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE 307
A G ++ L + I S+ R D + R LHWA GH I E L+ VN KD+
Sbjct: 13 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
G +PLH A R+ I + L+ + A + + +G +P H S
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS 115
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H G + + ++ GV VN +D G +PLH A G I + L+ K A VNA
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
+ G TPLHYA +R IA L++ A+ KD+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A + + + +E G + + +D +H A +G+L + +L+ A N +D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 169
Query: 306 NEGQTPLHYAVVCDREAI--AQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
EG TPLH A CD E + A+ LV Q A I +++ + +P V + +L
Sbjct: 170 TEGNTPLHLA--CDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 220
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H A +G++ + + S N++D+EG PLH A D + ++LLVS+ A + +
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Query: 305 DNEGQTPLHYA 315
+ E +TPL A
Sbjct: 202 NKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 249 FAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE 307
A G ++ L + I S+ R D + R LHWA GH I E L+ VN KD+
Sbjct: 14 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
G +PLH A R+ I + L+ + A + + +G +P H S
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS 116
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H G + + ++ GV VN +D G +PLH A G I + L+ K A VNA
Sbjct: 44 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
+ G TPLHYA +R IA L++ A+ KD+
Sbjct: 104 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 138
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A + + + +E G + + +D +H A +G+L + +L+ A N +D
Sbjct: 111 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 170
Query: 306 NEGQTPLHYAVVCDREAI--AQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
EG TPLH A CD E + A+ LV Q A I +++ + +P V + +L
Sbjct: 171 TEGNTPLHLA--CDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 221
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H A +G++ + + S N++D+EG PLH A D + ++LLVS+ A + +
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Query: 305 DNEGQTPLHYA 315
+ E +TPL A
Sbjct: 203 NKEEKTPLQVA 213
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+D +H REG + I G +N+ + PLH A GH +I + L+
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
AD+NA + G PLHYA ++ +A+ LV A + + + G P
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 243 MDAIHAFAREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
MD I REG+ + ++N + +N D G +PLHWA G + E+L+ + A +
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
N + TPLH A I Q L++ ADI + GN P H
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLH 110
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
D+N D+ G +PLH+A R A+ + L+ + A I + + ++P H+ S
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G D + K ++ +N + G PLH+A G ++E LV+ A V+ +
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 306 NEGQTPLHYAVVCDREAIAQ 325
G+ P+ A RE + +
Sbjct: 136 KYGEMPVDKAKAPLRELLRE 155
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
L+ ++ G S N++D+ G +P+H A G L+ ++LV ADVN D G P+H AV
Sbjct: 58 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 117
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
A+ FL ++ D+ +D G +P +
Sbjct: 118 GHTAVVSFLAAES-DLHRRDARGLTPLELA 146
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G +D L +E+G VN+ D G P+H AV GH + L +++ D++ +D
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRD 136
Query: 306 NEGQTPLHYAV 316
G TPL A+
Sbjct: 137 ARGLTPLELAL 147
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+D +H REG + I G +N+ + PLH A GH +I + L+
Sbjct: 30 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
AD+NA + G PLHYA ++ +A+ LV A + + + G P
Sbjct: 90 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 136
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 243 MDAIHAFAREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
MD I REG+ + ++N + +N D G +PLHWA G + E+L+ + A +
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
N + TPLH A I Q L++ ADI + GN P H
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLH 105
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
D+N D+ G +PLH+A R A+ + L+ + A I + + ++P H+ S
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 76
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G D + K ++ +N + G PLH+A G ++E LV+ A V+ +
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 306 NEGQTPLHYAVVCDREAIAQ 325
G+ P+ A RE + +
Sbjct: 131 KYGEMPVDKAKAPLRELLRE 150
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
+ + G + +L+D G A +H A G L+ + L+ ADVN +DNEG PLH A
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
+ +FLVK A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A GD++ L ++N V+VN ++ GR L + G+ I+ L+ + A+ + KD G
Sbjct: 13 AARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGF 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+H A Q L++ AD+ ++DN+GN P H+
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLA 110
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
L+ ++ G S N++D+ G +P+H A G L+ ++LV ADVNA D+ G P+H A+
Sbjct: 60 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 119
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
++ FL ++ D+ +D G +P +
Sbjct: 120 GHSSVVSFLAPES-DLHHRDASGLTPLELAR 149
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G +D L +E+G VN DS G P+H A+ GH ++ L + +D++ +D
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL-APESDLHHRD 138
Query: 306 NEGQTPLHYA 315
G TPL A
Sbjct: 139 ASGLTPLELA 148
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
L+ ++ G S N++D+ G +P+H A G L+ ++LV ADVNA D+ G P+H A+
Sbjct: 58 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 117
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
++ FL ++ D+ +D G +P +
Sbjct: 118 GHSSVVSFLAPES-DLHHRDASGLTPLELAR 147
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G +D L +E+G VN DS G P+H A+ GH ++ L + +D++ +D
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL-APESDLHHRD 136
Query: 306 NEGQTPLHYA 315
G TPL A
Sbjct: 137 ASGLTPLELA 146
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
+ + G + +L+D G A +H A G L+ + L+ ADVN +DNEG PLH A
Sbjct: 55 RLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
+ +FLVK A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A GD++ L ++N V+VN ++ GR L + G+ I+ L+ + A+ + KD G
Sbjct: 13 AARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGN 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+H A Q L++ AD+ ++DN+GN P H+
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
L+ ++ G S N++D+ G +P+H A G L+ ++LV ADVN D G P+H AV
Sbjct: 52 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
A+ FL ++ D+ +D G +P +
Sbjct: 112 GHTAVVSFLAAES-DLHRRDARGLTPLELA 140
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H AR G +D L +E+G VN+ D G P+H AV GH + L +++ D++ +D
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRD 130
Query: 306 NEGQTPLHYAV 316
G TPL A+
Sbjct: 131 ARGLTPLELAL 141
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 220 SKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPL 279
SK G + S++ E+ D + +H A+ G++ L +C++N V VN D G L
Sbjct: 54 SKGRTGLIPSNYVAEQAESID---NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110
Query: 280 HWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
+WA GH +I E L ++ N ++N ++ G T LH A I Q L+ + A +++
Sbjct: 111 YWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
+ + G + +L+D G A +H A G L+ + L+ ADVN +DNEG PLH A
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
+ +FLVK A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A GD++ L ++N V+VN ++ GR L + G+ I+ L+ + A+ + KD G
Sbjct: 13 AARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGF 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+H A + Q L++ AD+ ++DN+GN P H+
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 252 EGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
EG+ D + + I +L + EG LH AV GH I + LV +VNA D++G TP
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 312 LHYAVVCDREAIAQFLVKQNADI-GMKDNDGNSPCHVCE 349
LH A C+ + +FLV+ A + M +D + CE
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 253 GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVD---RGHLNISELLVSKNADVNAKDNEGQ 309
G NL K ++ +R PL +D G ++ + ++ + D + ++EG
Sbjct: 12 GKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGI 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
T LH AV I +FLV+ ++ D+DG +P H S
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 252 EGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
EG+ D + + I +L + EG LH AV GH I + LV +VNA D++G TP
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 312 LHYAVVCDREAIAQFLVKQNADI-GMKDNDGNSPCHVCE 349
LH A C+ + +FLV+ A + M +D + CE
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 286 GHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
G ++ + ++ + D + ++EG T LH AV I +FLV+ ++ D+DG +P
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 346 HVCES 350
H S
Sbjct: 108 HCAAS 112
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
ND + A+H G + + ++ GV+VN DS+G PLH A ++ + + LV
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 299 ADVNA 303
A V A
Sbjct: 127 AAVFA 131
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
+ + G + +L+D G A +H A G L+ + L+ ADVN +DNEG PLH A
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
+ +FLVK A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A GD++ L ++N V+VN ++ GR L + G+ I+ L+ + A+ + KD G
Sbjct: 13 AARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGF 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+H A Q L++ AD+ ++DN+GN P H+
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
+ + G + +L+D G A +H A G L+ + L+ ADVN +DNEG PLH A
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
+ +FLVK A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
A GD++ L ++N V+VN ++ GR L + G+ I+ L+ + A+ + KD G
Sbjct: 13 AARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTGF 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
+H A Q L++ AD+ ++DN+GN P H+
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 256 DNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
++LL C ++NG +VN DS GR PLH A GH ++ L + + AD+ A+D+EG+ PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Query: 313 HYAV 316
A+
Sbjct: 306 TIAM 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 278 PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
PL A L E L+ A+VN D+ G+ PLH+A + +A +K+ AD+G +
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 338 DNDGNSP 344
D++G P
Sbjct: 298 DSEGRDP 304
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 295 VSKNADVN----AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
++ ADVN +DN TPL A + +FL++ A++ D+ G P H
Sbjct: 220 LAHGADVNWVNGGQDN--ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 256 DNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
++LL C ++NG +VN DS GR PLH A GH ++ L + + AD+ A+D+EG+ PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Query: 313 HYAV 316
A+
Sbjct: 306 TIAM 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 278 PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
PL A L E L+ A+VN D+ G+ PLH+A + +A +K+ AD+G +
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 338 DNDGNSP 344
D++G P
Sbjct: 298 DSEGRDP 304
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 295 VSKNADVN----AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
++ ADVN +DN TPL A + +FL++ A++ D+ G P H
Sbjct: 220 LAHGADVNWVNGGQDN--ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 256 DNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
++LL C ++NG +VN DS GR PLH A GH ++ L + + AD+ A+D+EG+ PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Query: 313 HYAV 316
A+
Sbjct: 306 TIAM 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 278 PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
PL A L E L+ A+VN D+ G+ PLH+A + +A +K+ AD+G +
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 338 DNDGNSP 344
D++G P
Sbjct: 298 DSEGRDP 304
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 295 VSKNADVN----AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
++ ADVN +DN TPL A + +FL++ A++ D+ G P H
Sbjct: 220 LAHGADVNWVNGGQDN--ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 249 FAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE 307
A G +D L + I S+ R D + R LHWA GH I E L+ VN KD+
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
G +PLH A + I + L+ + A + + +G +P H S
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+E G + + +D +H A +G+L + +L+ A N +D EG TPLH A CD E
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA--CDEE 183
Query: 322 AI--AQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
+ A+FLV Q A I +++ + +P V + +L
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLIL 220
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H G + + ++ GV VN +D G +PLH A G I + L+ K A VNA
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
+ G TPLHYA +R IA L++ A+ KD+ + H
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
A+H A +G++ + + S N++D+EG PLH A D + ++ LV++ A + +
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 305 DNEGQTPLHYA 315
+ E +TPL A
Sbjct: 202 NKEEKTPLQVA 212
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG V +D G PLH A GHL + +LL+
Sbjct: 3 GSDLGKKLLEA-ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
ADVNA+D G+T ++ E +A+ L
Sbjct: 62 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
+L++ ADV AKD G TPLH A + + L++ AD+ +D G +
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKT 74
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 136 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYI 190
S + L+ Y+ YK AT GPC P+P R KW AW LG M EEAM YI
Sbjct: 31 SYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYI 85
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
G+DL + A AR G D + + NG V +D G PLH A GHL + +LL+
Sbjct: 21 GSDLGKKLLEA-ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
ADV A+D G+T ++ E +A+ L
Sbjct: 80 GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
+L++ ADV AKD G TPLH A + + L++ AD+ +D G +
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 191 DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMD-----A 245
D T L +G L++ +E+ AP V S F Y+ S ++ + D A
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEE-----EDAP--AVISDFIYQGASLHN-QTDRTGETA 61
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAK 304
+H AR D + +E N++D+ GR PLH AV + ++L+ A D++A+
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
++G TPL A E + + L+ +AD+ D+ G S H
Sbjct: 122 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 265 GVSVNLRDSEGRAPLHWA------VDRGHLN--------ISELLVSKNADVNAKDNEGQT 310
G+ VN+R +G PL A ++ G+ IS+ + + N D G+T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 311 PLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
LH A R A+ L++ +AD ++DN G +P H S
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 100
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG 308
A EG +++L I + VN D G++ LHWA +++ + +L+ A+ + ++N
Sbjct: 135 LAVEGMLEDL---INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 191
Query: 309 QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
+TPL A A+ L+ A+ + D+ P + +
Sbjct: 192 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 232
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
K ++D L +Y+ YK AT G + +P L +AKW AW +L E+AM+ YID V
Sbjct: 18 KPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKV 77
Query: 194 TEL 196
EL
Sbjct: 78 EEL 80
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 191 DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMD-----A 245
D T L +G L++ +E+ AP V S F Y+ S ++ + D A
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEE-----EDAP--AVISDFIYQGASLHN-QTDRTGETA 60
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAK 304
+H AR D + +E N++D+ GR PLH AV + ++L+ A D++A+
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
++G TPL A E + + L+ +AD+ D+ G S H
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
IS+ + + N D G+T LH A R A+ L++ +AD ++DN G +P H
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 350 S 350
S
Sbjct: 99 S 99
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG 308
A EG +++L I + VN D G++ LHWA +++ + +L+ A+ + ++N
Sbjct: 134 LAVEGMLEDL---INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190
Query: 309 QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
+TPL A A+ L+ A+ + D+ P + +
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 227 VFSSFAYEEESGNDLKMD-----AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHW 281
V S F Y+ S ++ + D A+H AR D + +E N++D+ GR PLH
Sbjct: 6 VISDFIYQGASLHN-QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 282 AVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDND 340
AV + ++L+ A D++A+ ++G TPL A E + + L+ +AD+ D+
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 341 GNSPCH 346
G S H
Sbjct: 125 GKSALH 130
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
IS+ + + N D G+T LH A R A+ L++ +AD ++DN G +P H
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 350 S 350
S
Sbjct: 67 S 67
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG 308
A EG +++L I + VN D G++ LHWA +++ + +L+ A+ + ++N
Sbjct: 102 LAVEGMLEDL---INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158
Query: 309 QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
+TPL A A+ L+ A+ + D+ P + +
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 199
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
K S D L+LYALYK AT G +P M R KW+AW+ L E+A ++YI +V
Sbjct: 18 KPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALV 77
Query: 194 TELYPTWAA 202
+L +++
Sbjct: 78 DQLIAKYSS 86
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+++G V+ +D G PLH A GH ++ELL+ A VNA D TPLH A +R
Sbjct: 78 LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 322 AIAQFLVKQNADIGMKDNDGNS 343
+ L+ AD + + G S
Sbjct: 138 EVCSLLLSHGADPTLVNCHGKS 159
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSK 297
+ K D + AR G+ + L+ + ++VN S+GR PLH A + I +LL+
Sbjct: 22 EYKKDELLEAARSGNEEKLMALL-TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
ADV+AKD G PLH A + + L+K A + D +P H
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
+ G +VN ++ + PLH A +R H ++ E+L A +NA D+ GQT LH A +
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 322 AIAQFLVKQNAD 333
+ L+ +D
Sbjct: 294 QTCRLLLSYGSD 305
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGR-APLHWAVDRGH---LNISELLVSKNADVNAKD 305
ARE D+ + K + + +N + + LH AV H ++ELL+ K A+VN K+
Sbjct: 186 AREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
+ TPLH A + + L K A + D+ G + H
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
M +H A D + ++G +N DS G+ LH A GHL LL+S +D +
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 303 AKDNEGQTPLHYAVVCDREAIAQFL 327
+G T A EA+ Q L
Sbjct: 308 IISLQGFT----AAQMGNEAVQQIL 328
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 228 FSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH 287
S A ++ G DL +H R+G + +++ ++ G +L D EG + +H A GH
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 288 LNISELLVSKNADVNAKDNEGQTPLHYA 315
+I L++K DV+ D G TPL +A
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 236 ESGNDLK------MDAIHAFAREGDMDNLLKCIENGVSVN-LRDSEGRAPLHWAVDRGHL 288
E+G D++ + +H A +D + I G V+ L PLHWA +GHL
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89
Query: 289 NISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
++ L+ AD + D EG + +H A +I +L+ + D+ M D +G +P
Sbjct: 90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH-LNISELLVSKNADVNAK 304
IH A+ G + I G V++ D G PL WA R H ++ + LL++ N VN
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 305 DN-EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
D T LH+AV+ + L++ A++ ++ G S
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE-GQTPLHYAVVC 318
+ +E G V D E LHWA +++ + +SK A V+ + TPLH+A
Sbjct: 27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHV 347
++ L+K AD + D +G S H+
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 266 VSVNLRDSEGR-APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
VSVNL D + LHWAV G+ + LL+ A+V+A++ +G++ L A
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 225 GPVFSSFAYEEESGNDLKMD-----AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPL 279
G V S F Y+ S ++ + D A+H AR D + +E ++D+ GR PL
Sbjct: 1 GSVISDFIYQGASLHN-QTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPL 59
Query: 280 HWAVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
H AV + ++L+ A D++A+ ++G TPL A E + + L+ +AD+ D
Sbjct: 60 HAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD 119
Query: 339 NDGNSPCH 346
+ G S H
Sbjct: 120 DLGKSALH 127
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
IS+ + + N D G+T LH A R A+ L++ +AD ++DN G +P H
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 350 S 350
S
Sbjct: 64 S 64
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG 308
A EG +++L I + VN D G++ LHWA +++ + +L+ A+ + ++N+
Sbjct: 99 LALEGMLEDL---INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKE 155
Query: 309 QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
+TPL A A+ L+ A+ + D+ P + +
Sbjct: 156 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 196
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H + +GD+ ++ ++NG N++D G PLH A + GHL + ELL+ A VN
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
+ +PLH A I + L+ A
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%)
Query: 270 LRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
+ G LH A +G + E L+ +D N KD+ G TPLH A + + L++
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 330 QNADIGMKDNDGNSPCH 346
A + +SP H
Sbjct: 65 HKALVNTTGYQNDSPLH 81
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H G + + +++ VN + +PLH A GH++I +LL+S A NA +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 306 NEGQTPLHYAVVCDREAIAQFLV 328
G P+ Y D E++ L+
Sbjct: 107 IFGLRPVDY---TDDESMKSLLL 126
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 262 IENGVSV-NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
I G S+ N D G LH A + ++ L+ +AD N +DN G+TPLH AV D
Sbjct: 43 IYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102
Query: 321 EAIAQFLVKQNA-DIGMKDNDGNSPC 345
+ + Q L++ A D+ + +DG +P
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPL 128
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 191 DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGND----LKMDAI 246
D T L +G L++ +E+ AP V S F Y+ S ++ A+
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEE-----EDAP--AVISDFIYQGASLHNQTDRTGATAL 61
Query: 247 HAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAKD 305
H A D + +E N++D+ GR PLH AV + ++L+ A D++A+
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
++G TPL A E + + L+ +AD+ D+ G S H
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
IS+ + + N D G T LH A R A+ L++ +AD ++DN G +P H
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 350 S 350
S
Sbjct: 99 S 99
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG 308
A EG +++L I + VN D G++ LHWA +++ + +L+ A+ + ++N
Sbjct: 134 LAVEGMLEDL---INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190
Query: 309 QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
+TPL A A+ L+ A+ + D+ P + +
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCD 319
++ G N +D+ GR PLH AV + + ++L+ A ++NA+ ++G TPL A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 320 REAIAQFLVKQNADIGMKDNDGNSPCH 346
E + + L+ +ADI DN G + H
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALH 156
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
D G LH A + ++ L+ AD N++DN G+TPLH AV D + Q L++
Sbjct: 48 DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 332 A-DIGMKDNDGNSPC 345
A ++ + +DG +P
Sbjct: 108 ATNLNARMHDGTTPL 122
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 266 VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQ 325
++N R +G PL A + E L++ +AD+NA DN G+T LH+A +
Sbjct: 109 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 168
Query: 326 FLVKQNADIGMKDNDGNSPCHVCESDWPW 354
L+ +A+ +D+ +P + + +
Sbjct: 169 ILLMHHANRDAQDDKDETPLFLAAREGSY 197
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG 308
A EG +++L+ +N D+ G+ LHWA + +L+ +A+ +A+D++
Sbjct: 128 LAIEGMVEDLITA---DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD 184
Query: 309 QTPLHYA 315
+TPL A
Sbjct: 185 ETPLFLA 191
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 290 ISELLVSKNADVNAK-DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
IS+LL ++ A++NA D G+T LH A R A+ L+ AD +DN G +P H
Sbjct: 33 ISDLL-AQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
K +++ L +Y+ YK AT G + +P L +AKW AW +L E+AM+ YID V
Sbjct: 18 KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKV 77
Query: 194 TEL 196
EL
Sbjct: 78 EEL 80
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
K S++ L +Y YK AT G + +P L T +AKW AW +L E+AM+ YI+ V
Sbjct: 19 KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKV 78
Query: 194 TEL 196
EL
Sbjct: 79 EEL 81
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
K S++ L +Y YK AT G + +P L T +AKW AW +L E+AM+ YI+ V
Sbjct: 18 KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKV 77
Query: 194 TEL 196
EL
Sbjct: 78 EEL 80
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNAD 333
G LH A G+L I ELLVS ADVNA++ G+T LH AV + L+K AD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 334 IGMKDNDGNSP 344
+ G SP
Sbjct: 177 VNRVTYQGYSP 187
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV-CE 349
A +N ++N QTPLH AV+ ++ IA+ L+ D ++D GN+P H+ CE
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA 324
+N +++ + PLH AV I+E L+ D +D G TPLH A C++ +A
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA--CEQGCLA 92
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNAD 333
G LH A G+L I ELLVS ADVNA++ G+T LH AV + L+K AD
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 334 IGMKDNDGNSP 344
+ G SP
Sbjct: 174 VNRVTYQGYSP 184
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV-CE 349
A +N ++N QTPLH AV+ ++ IA+ L+ D ++D GN+P H+ CE
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 84
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA 324
+N +++ + PLH AV I+E L+ D +D G TPLH A C++ +A
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA--CEQGCLA 89
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 246 IHAFAREGDMD-----NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN-ISELLVSKNA 299
IHA D D +LL +++G VN+R G+ PL AV++ HL + LL ++
Sbjct: 207 IHALLSSDDSDVEAITHLL--LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 264
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA 332
++N D++G+T L AV + IA+ L K+ A
Sbjct: 265 EINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 178 GAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED--AASTDSKAPMGPVFSSFAYEE 235
G P A+Q + + EL A L+ K G A+ + +F S +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR-----DSE-----GRAPLHWAVDR 285
+ A A G + L + G +VNLR D E G L A ++
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178
Query: 286 GHLNISELLVSK-NADVNAKDNEGQTPLHYAVVC----DREAIAQFLVKQNADIGMKDND 340
GH+ + ++L+ + ADVNA DN G+ L +A++ D EAI L+ AD+ ++
Sbjct: 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 238
Query: 341 GNSP 344
G +P
Sbjct: 239 GKTP 242
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 217 STDSKAPM-GPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEG 275
S D P GP SS N L + A+ + D+D + + +E G +VN ++ EG
Sbjct: 3 SRDHNNPQEGPTSSSGRRAAVEDNHLLIKAV----QNEDVDLVQQLLEGGANVNFQEEEG 58
Query: 276 R-APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
PLH AV +I ELL+ AD + G TP A + + + + + AD+
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 233 YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
++EE G + +RE ++ LL+ +G LR G P A G + + +
Sbjct: 53 FQEEEGGWTPLHNAVQMSREDIVELLLR---HGADPVLRKKNGATPFILAAIAGSVKLLK 109
Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
L +SK ADVN D G T A V + +FL K+ A++ ++
Sbjct: 110 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 246 IHAFAREGDMD-----NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN-ISELLVSKNA 299
IHA D D +LL +++G VN+R G+ PL AV++ HL + LL ++
Sbjct: 187 IHALLSSDDSDVEAITHLL--LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA 332
++N D++G+T L AV + IA+ L K+ A
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 181 PPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED--AASTDSKAPMGPVFSSFAYEEESG 238
P A+Q + + EL A L+ K G A+ + +F S +
Sbjct: 42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101
Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR-----DSE-----GRAPLHWAVDRGHL 288
+ A A G + L + G +VNLR D E G L A ++GH+
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 289 NISELLVSK-NADVNAKDNEGQTPLHYAVVC----DREAIAQFLVKQNADIGMKDNDGNS 343
+ ++L+ + ADVNA DN G+ L +A++ D EAI L+ AD+ ++ G +
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 344 P 344
P
Sbjct: 222 P 222
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 254 DMDNLLKCIENGVSVNLRDSEGR-APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
D+D + + +E G +VN ++ EG PLH AV +I ELL+ AD + G TP
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 313 HYAVVCDREAIAQFLVKQNADI 334
A + + + + + AD+
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADV 98
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 233 YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
++EE G + +RE ++ LL+ +G LR G P A G + + +
Sbjct: 33 FQEEEGGWTPLHNAVQMSREDIVELLLR---HGADPVLRKKNGATPFLLAAIAGSVKLLK 89
Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
L +SK ADVN D G T A V + +FL K+ A++ ++
Sbjct: 90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELL--VSKNADVNAKDNEGQTPLHYAVVCD 319
IENG SV ++D + PLH A G L + ELL + K+A VN +D +G TPL +A+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEG 185
Query: 320 REAIAQFLV-KQNADIGMKDNDG 341
A LV K A+ + DN G
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKG 208
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK--NADVNAKDNEGQTPLHYA 315
LL +EN + D G P H A G+L + + L + D+N N+G T LH A
Sbjct: 55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
V ++QFL++ A + +KD P H
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 278 PLHWA-VDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM 336
PLH A ++ + ELL SK + + KD +G+ PLH++V I FL+ + ++ +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 337 K---DNDGNSPCHV 347
D+ G +P H+
Sbjct: 65 DDYPDDSGWTPFHI 78
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
+N ++G LH AV + +S+ L+ A V KD Q PLH A
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELL--VSKNADVNAKDNEGQTPLHYAVVCD 319
IENG SV ++D + PLH A G L + ELL + K+A VN +D +G TPL +A+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEG 185
Query: 320 REAIAQFLV-KQNADIGMKDNDG 341
A LV K A+ + DN G
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKG 208
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK--NADVNAKDNEGQTPLHYA 315
LL +EN + D G P H A G+L + + L + D+N N+G T LH A
Sbjct: 55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
V ++QFL++ A + +KD P H
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 278 PLHWA-VDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM 336
PLH A ++ + ELL SK + + KD +G+ PLH++V I FL+ + ++ +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 337 K---DNDGNSPCHV 347
D+ G +P H+
Sbjct: 65 DDYPDDSGWTPFHI 78
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
+N ++G LH AV + +S+ L+ A V KD Q PLH A
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELL--VSKNADVNAKDNEGQTPLHYAVVCD 319
IENG SV ++D + PLH A G L + ELL + K+A VN +D +G TPL +A+
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEG 185
Query: 320 REAIAQFLV-KQNADIGMKDNDG 341
A LV K A+ + DN G
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKG 208
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK--NADVNAKDNEGQTPLHYA 315
LL +EN + D G P H A G+L + + L + D+N N+G T LH A
Sbjct: 55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
V ++QFL++ A + +KD P H
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 278 PLHWA-VDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM 336
PLH A ++ + ELL SK + + KD +G+ PLH++V I FL+ + ++ +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 337 K---DNDGNSPCHV 347
D+ G +P H+
Sbjct: 65 DDYPDDSGWTPFHI 78
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
+N ++G LH AV + +S+ L+ A V KD Q PLH A
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
K + D QL Y +K AT G + +P + T +AKW AW+ + E A QKY++ +
Sbjct: 25 KPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKL 84
Query: 194 TEL 196
E+
Sbjct: 85 LEI 87
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Query: 203 GSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAI------HAFAREGDMD 256
GS + S G++ D P GP F N L DA+ H A G
Sbjct: 18 GSHMASMDGKQ--GGMDGSKPAGP--RDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQL 73
Query: 257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
+L I G +VN+ ++ +PLH A GHL+ ++L+ A VN + TPL A
Sbjct: 74 SLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 133
Query: 317 VCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
V L++ A + ++D SP H
Sbjct: 134 VSGSWDCVNLLLQHGASV-QPESDLASPIH 162
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
IH AR G ++ + I G +++ + S PL+ A + + L+ ADVN
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q 218
Query: 306 NEGQ-TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWP 353
+GQ +PLH V E +A L+ AD K+ +G P + + P
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP 267
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 254 DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLH 313
D NLL +++G SV +S+ +P+H A RGH+ L++ +++ K + TPL+
Sbjct: 139 DCVNLL--LQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195
Query: 314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
A + A + L++ AD+ +SP H
Sbjct: 196 LACENQQRACVKKLLESGADVNQGKGQ-DSPLH 227
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
K +E+G VN + +PLH V ++ LL+ AD AK+ EG+ P+ +V
Sbjct: 208 KLLESGADVNQGKGQ-DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE--LVPP 264
Query: 320 REAIAQ-FLVKQNADI 334
+AQ FL ++ A +
Sbjct: 265 ESPLAQLFLEREGASL 280
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
+ EG LH A+ + +I + L++ A+VN+ D+ G TPLH A C+ I LV+
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 332 ADI-GMKDNDGNSPCHVCE 349
A I +DG + C+
Sbjct: 111 AAIFATTLSDGATAFEKCD 129
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 286 GHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
G L + + V + D + + EG T LH A+ +I FL+ A++ D+ G +P
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Query: 346 HVCES 350
H S
Sbjct: 92 HCAAS 96
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNA 299
+ + A+ + D++ +L+ G ++N + S+ G+ L AV G +++ + L++ A
Sbjct: 149 IMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEA 207
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ-NADIGMKDNDGNSPCHVC----ESDWPW 354
DVN +D++G T L A + IA L+ + DI + D DG++ V +S+
Sbjct: 208 DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267
Query: 355 MLHA 358
ML++
Sbjct: 268 MLYS 271
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 272 DSEGRAPLHWAVDRGHL----NISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
D +G PLH AV +G+L + L +++ +N QTPLH AV+ ++ + L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 328 VKQNADIGMKDNDGNSPCHV-CESDWPWMLHA 358
V A D G + H+ CE P L A
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 16/190 (8%)
Query: 174 WQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDA-ASTDSKAP--MGPVFSS 230
+ L P A+ + V L T A + GQ A + + ++P + + S
Sbjct: 42 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101
Query: 231 FA---YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRD-SEGRAPLHWAVDRG 286
A + E+ N + A+H + + +E G ++ D GR+PL AV+
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161
Query: 287 HLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
L++ +LL+ A+VNA+ G + LH A + + LV+ AD +K+
Sbjct: 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN-------- 213
Query: 347 VCESDWPWML 356
C +D P M+
Sbjct: 214 -CHNDTPLMV 222
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV-----V 317
+ G +++ ++ + PLH AV ++ LLV+ A A D GQT H A
Sbjct: 34 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT 93
Query: 318 CDREAIAQFLVKQNADIGMKDNDGNSPCHV-----CESDWPWMLHAAKGTD 363
C R A+ D+ ++ DG + HV C+ +L +G D
Sbjct: 94 CLR-ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE--RGAD 141
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE--------------GQTPLHYAVVCD 319
+G+ LH A++R + + LLV ADV A N G+ PL A +
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 320 REAIAQFLVK---QNADIGMKDNDGNSPCH 346
+ AI +FL++ Q ADI +D+ GN+ H
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLH 189
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
++H A +G+M L IE +N D EG PL WA G + + E L+ AD
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
++ L A I + L+ D+ D +G +P
Sbjct: 82 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 121
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 245 AIHAFAREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
+IH A +G++D L + + G + VN D G PL WA G + L+ AD +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKG 361
E ++ L A I L++++ DI + D +G +P +L+A +G
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP----------LLYAVRG 112
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 253 GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
G D + +E V +N+ D G PL +AV H+ E L+++ AD+ + + G TP+
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139
Query: 313 HYAVVCDREAIAQFL 327
AV + Q +
Sbjct: 140 DLAVALGYRKVQQVI 154
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
++H A +G+M L IE +N D EG PL WA G + + E L+ AD
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
++ L A I + L+ D+ D +G +P
Sbjct: 64 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 103
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDN-------------EGQTPLHYAVVCDR 320
EG+ LH AV ++N+ L+++ A V+A+ G+ PL +A
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHV 347
E I + L++ ADI +D+ GN+ H+
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV 317
G PL +A G I LL+ AD+ A+D+ G T LH ++
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
++H A +G+M L IE +N D EG PL WA G + + E L+ AD
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
++ L A I + L+ D+ D +G +P
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 245 AIHAFAREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
+IH A +G++D L + + G + VN D G PL WA G + L+ AD +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
E ++ L A I L++++ DI + D +G +P
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 253 GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
G D + +E V +N+ D G PL +AV H+ E L+++ AD+ + + G TP+
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPM 139
Query: 313 HYAVVCDREAIAQFL 327
AV + Q +
Sbjct: 140 DLAVALGYRKVQQVI 154
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 231 FAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRD--SEGRAP----LHWAV- 283
+A ++ + K+ ++ + D+ LL+ +GV + + + G P LH AV
Sbjct: 119 YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVR 178
Query: 284 --DRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
DR L+I + LV + +++ + +G T LHY + D + L++ A I + + G
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 238
Query: 342 NSP 344
+P
Sbjct: 239 ETP 241
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
+H A G +L I G +VN+ ++ +PLH A GHL+ ++L+ A VN
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
+ TPL A V L++ A + ++D SP H
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIH 106
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 254 DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLH 313
D NLL +++G SV +S+ +P+H A RGH+ L++ +++ K + TPL+
Sbjct: 83 DCVNLL--LQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 139
Query: 314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
A + A + L++ AD+ + +SP H
Sbjct: 140 LACENQQRACVKKLLESGADVN-QGKGQDSPLH 171
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
IH AR G ++ + I G +++ + S PL+ A + + L+ ADVN
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q 162
Query: 306 NEGQ-TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
+GQ +PLH E +A L+ AD K+ +G P
Sbjct: 163 GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRP 202
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 277 APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM 336
+P+H A GH L+S+ VN + +PLH A + + + L+K A +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 337 KDNDGNSP 344
D ++P
Sbjct: 65 VTADWHTP 72
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
+D + IH AR+G D + + IE GVS +++ G LH A G ++ ++ L S
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV- 75
Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
+V++ + GQ P+H AV ++ + LV+ + G
Sbjct: 76 GEVHSLWH-GQKPIHLAVXANKTDLVVALVEGAKERG 111
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
++ + ++ + +G + LHWA+ +++ V DVN +DNE PL+ +V
Sbjct: 199 KSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSV 252
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 40/124 (32%)
Query: 264 NGVSVNLRDSEGRAPLHWAVDRG--HLNISELLVSKNADVNAKDNEGQTP---------- 311
N + +++ +G+ LHW V G +L ++LV A AKD +TP
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNR 186
Query: 312 ----------------------------LHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
LH+A++ + E +A V+ D+ +DN+
Sbjct: 187 EALDLXXDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTV 246
Query: 344 PCHV 347
P ++
Sbjct: 247 PLYL 250
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 142 QLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTEL 196
+LY LYK A G + P L + +AKW+AW + E+A YI EL
Sbjct: 29 ELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKEL 83
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNA 299
L + IH ++ +M LL+ + G +N + GR PLH AV+ ++ ELL+ A
Sbjct: 162 LHVAVIH---KDAEMVRLLR--DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
D A+ G+TPL A++ +A+ L A D SPC
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE-GQTPLHYAVVCDREAIAQFLVKQNA 332
+G PLH AV + LL AD+N + G+TPLH AV ++ + L+K A
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 333 DIGMKDNDGNSP 344
D + G +P
Sbjct: 217 DPTARMYGGRTP 228
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 231 FAYEEESGND-LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN 289
F Y E G+ L + IH E +D LL ++L++ G+ LH A G +
Sbjct: 2 FGYVTEDGDTALHLAVIHQ--HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
E L + A V + G T LH A A L++
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNA 299
L + IH ++ +M LL+ + G +N + GR PLH AV+ ++ ELL+ A
Sbjct: 162 LHVAVIH---KDAEMVRLLR--DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
D A+ G+TPL A++ +A+ L A D SPC
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE-GQTPLHYAVVCDREAIAQFLVKQNA 332
+G PLH AV + LL AD+N + G+TPLH AV ++ + L+K A
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 333 DIGMKDNDGNSP 344
D + G +P
Sbjct: 217 DPTARMYGGRTP 228
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 231 FAYEEESGND-LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN 289
F Y E G+ L + IH E +D LL ++L++ G+ LH A G +
Sbjct: 2 FGYVTEDGDTALHLAVIHQ--HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
E L + A V + G T LH A A L++
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ 330
D+EG PL+ AV + I++ L+ + AD+N +++ +P YA R I +++K
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 270 LRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
++ E A L A R + E+L V+ D EG TPL+ AV + IA+ L+
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 330 QNADIGMKDNDGNSPCHVCESDWPWMLHAAKG 361
+ ADI +++ SD P++ A+G
Sbjct: 61 RGADINLQN---------SISDSPYLYAGAQG 83
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 250 AREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAV-----DRGHLNISELLVSKNADVNA 303
A +G +DN+ +E+G ++ ++ G L AV ++ + +I +LL+ AD +
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173
Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQN 331
KDN G+T + YA I++ L + N
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 268 VNLRDSEGRAPLHWAVDRGHL-NISELLVSKNADVNAKDNEGQTPLHYAVVCDREA---- 322
+N + G L A ++GH+ N+ LL D++ +++ G T L AV RE
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL-REGNQLY 157
Query: 323 --IAQFLVKQNADIGMKDNDGNSPC 345
I + L++ AD +KDN G +
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTAM 182
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 267 SVNLRD-SEGRAPLHWAVDRGHLNISELLV--------SKNADVNAKDNEGQTPLHYAVV 317
SVN+ D R LHW SE L+ + ADVNA D + TPL AV+
Sbjct: 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVL 175
Query: 318 CDREAIAQFLVKQNADIGMKDNDGNSPCH 346
R + +L K AD + + S H
Sbjct: 176 ARRRRLVAYLXKAGADPTIYNKSERSALH 204
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 285 RGHLNISELLVSKNADVN-----AKDNE---GQTPLHYAVVCDREAIAQFLV-KQNADIG 335
R + ++LLV K A V+ KD+E G+T LHYA I ++LV ++ ++
Sbjct: 248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKD 307
Query: 336 MKDNDGNSPC 345
+D DG +P
Sbjct: 308 KQDEDGKTPI 317
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNA---------KDNE-----GQTPLHYAVVCD 319
G+ LH A++R + ELLV K ADV+A KD G+ PL A +
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 320 REAIAQFLVK---QNADIGMKDNDGNSPCH 346
+ I +L + + AD+ +D+ GN+ H
Sbjct: 152 QPHIVHYLTENGHKQADLRRQDSRGNTVLH 181
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELL 294
+H AREG +D L+ G +++RD+ GR P+ A + GH +++ L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELL 294
+H AREG +D L+ G +++RD+ GR P+ A + GH +++ L
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
AR+ D L + +E+ V+ D GR L + G LL AD++ +D G
Sbjct: 52 ARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 310 -TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
T LH A R + + LV+ ADI ++D G + +
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
AR+ D L + +E+ V+ D GR L + G LL AD++ +D G
Sbjct: 53 ARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 111
Query: 310 -TPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
T LH A R + + LV+ ADI ++D G
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERG 144
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNA---------KDNE-----GQTPLHYAVVCD 319
G+ LH A++R + ELLV++ ADV+A KD G+ PL A +
Sbjct: 90 RGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 149
Query: 320 REAIAQFLVK---QNADIGMKDNDGNSPCH 346
+ I +L + + AD+ +D+ GN+ H
Sbjct: 150 QPHIVNYLTENPHKKADMRRQDSRGNTVLH 179
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
+H AREG +D L+ G +++ D+ GR P+ A ++GH +I+ L + D
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 254 DMDNLLKCIENGVSVN--LRDSEGRAP----LHWAV---DRGHLNISELLVSKNADVNAK 304
D+ ++L+ NG L + +AP LH AV ++ L + + ++ ++AK
Sbjct: 163 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 222
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
+G T LHYA + ++ + L+K A +G + G +
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 254 DMDNLLKCIENGVSVN--LRDSEGRAP----LHWAV---DRGHLNISELLVSKNADVNAK 304
D+ ++L+ NG L + +AP LH AV ++ L + + ++ ++AK
Sbjct: 144 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 203
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
+G T LHYA + ++ + L+K A +G + G +
Sbjct: 204 AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 242
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 265 GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA 324
++ R +G PL A + E L++ +ADVNA D+ G++ LH+A + A
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 325 QFLVKQNADIGMKDNDGNSPCHVCESDWPW 354
L+K A+ M++N +P + + +
Sbjct: 65 VVLLKNGANKDMQNNKEETPLFLAAREGSY 94
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 294 LVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
L ++ D++A+ ++G TPL A E + + L+ +AD+ D+ G S H
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 53
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG 308
A EG +++L I + VN D G++ LHWA +++ + +L+ A+ + ++N+
Sbjct: 25 LALEGMLEDL---INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKE 81
Query: 309 QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
+TPL A A+ L+ A+ + D+ P + +
Sbjct: 82 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 122
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
E PLH A I ++L+ D + D++G T L+YAV + VK+N
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKN 118
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG-QTPLHYAVVCDREAIAQFLVKQ 330
D +G L++AVD G+ +L V KN + G +T ++AV + +I + + +
Sbjct: 92 DDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSE 151
>pdb|3GCZ|A Chain A, Yokose Virus Methyltransferase In Complex With Adomet
Length = 282
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
L++D HA D+L I+NG++V S G A L W +RG++ + ++V
Sbjct: 51 LEVDRTHA------RDSLENGIQNGIAV----SRGSAKLRWMEERGYVKPTGIVV 95
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE-------------GQTPLHYAVVCDR 320
G + LH A+++ L +LLV A+V+A+ G+ PL A +
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 321 EAIAQFLVK---QNADIGMKDNDGNSPCH 346
+ +L++ Q A + D+ GN+ H
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
D G PLHW +L + + LV ++ DN G++ L AV
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172
>pdb|3S4C|A Chain A, Lactose Phosphorylase In Complex With Sulfate
pdb|3S4D|A Chain A, Lactose Phosphorylase In A Ternary Complex With Cellobiose
And Sulfate
Length = 822
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 180 MPPEEAMQKYIDIVTELYPTWAAGSSLK--SKRGQEDAASTDSKAPMGPVFSSFAYEEES 237
+ PE A ++ IDI + + +A + +KRG D S + P+ + + AY +E+
Sbjct: 379 LIPERARERIIDIASTQFADGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKET 438
Query: 238 GNDLKMD 244
G+ +D
Sbjct: 439 GDFSILD 445
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,027,517
Number of Sequences: 62578
Number of extensions: 393422
Number of successful extensions: 1199
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 444
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)