BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043344
         (194 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V4G|A Chain A, Crystal Structure Of Gamma-glutamylcysteine Synthetase
           From Escherichia Coli B
 pdb|1V4G|B Chain B, Crystal Structure Of Gamma-glutamylcysteine Synthetase
           From Escherichia Coli B
 pdb|1V4G|C Chain C, Crystal Structure Of Gamma-glutamylcysteine Synthetase
           From Escherichia Coli B
 pdb|1V4G|D Chain D, Crystal Structure Of Gamma-glutamylcysteine Synthetase
           From Escherichia Coli B
          Length = 518

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 167 THKFIISAFADLLVSLMSPPDADM 190
           THK+I + FA+ L+  ++P D D+
Sbjct: 53  THKWITTDFAEALLEFITPVDGDI 76


>pdb|1VA6|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
           From Escherichia Coli B Complexed With Transition-State
           Analogue
 pdb|1VA6|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
           From Escherichia Coli B Complexed With Transition-State
           Analogue
 pdb|2D32|A Chain A, Crystal Structure Of Michaelis Complex Of Gamma-
           Glutamylcysteine Synthetase
 pdb|2D32|B Chain B, Crystal Structure Of Michaelis Complex Of Gamma-
           Glutamylcysteine Synthetase
 pdb|2D32|C Chain C, Crystal Structure Of Michaelis Complex Of Gamma-
           Glutamylcysteine Synthetase
 pdb|2D32|D Chain D, Crystal Structure Of Michaelis Complex Of Gamma-
           Glutamylcysteine Synthetase
 pdb|2D33|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
           Complexed With Aluminum Fluoride
 pdb|2D33|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
           Complexed With Aluminum Fluoride
 pdb|2D33|C Chain C, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
           Complexed With Aluminum Fluoride
 pdb|2D33|D Chain D, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
           Complexed With Aluminum Fluoride
          Length = 518

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 167 THKFIISAFADLLVSLMSPPDADM 190
           THK+I + FA+ L+  ++P D D+
Sbjct: 53  THKWITTDFAEALLEFITPVDGDI 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.124    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,998,070
Number of Sequences: 62578
Number of extensions: 104799
Number of successful extensions: 202
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)