BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043344
         (194 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyostelium discoideum GN=limA
           PE=2 SV=1
          Length = 1183

 Score = 30.8 bits (68), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 14  PSSSIFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESEPDFATVVASQRFFFTS 73
           P     I + N+     S SN+ +P+  T  ++T S  P SE    F  V + +    T+
Sbjct: 257 PKHGSLINDGNNSTKSKSNSNTGVPNNSTQYNATPS--PSSEVVNQFVVVESDKGQNPTN 314

Query: 74  PGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRD 114
             RSNS  +S   + ++ E    + P NN  +GS+   ++D
Sbjct: 315 AKRSNSFGDSLDDIISSME----MIPKNNVSTGSNVFNIQD 351


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.125    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,715,367
Number of Sequences: 539616
Number of extensions: 2497658
Number of successful extensions: 12549
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 10585
Number of HSP's gapped (non-prelim): 1624
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)