Query 043344
Match_columns 194
No_of_seqs 124 out of 227
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nsz_A Programmed cell death p 75.8 2.2 7.5E-05 32.4 3.4 46 125-176 2-47 (129)
2 2ion_A PDCD4, programmed cell 74.5 2.5 8.7E-05 33.1 3.5 48 124-177 3-50 (152)
3 2rg8_A Programmed cell death p 72.1 4.3 0.00015 32.1 4.4 48 125-178 5-52 (165)
4 2zu6_B Programmed cell death p 44.7 21 0.00072 30.9 4.2 49 124-178 160-208 (307)
5 3eiq_C Programmed cell death p 38.7 47 0.0016 29.5 5.5 50 122-177 209-258 (358)
6 3eiq_C Programmed cell death p 37.0 31 0.001 30.7 4.1 46 127-178 51-96 (358)
7 1ug3_A EIF4GI, eukaryotic prot 33.8 37 0.0013 29.1 4.0 45 125-175 6-50 (339)
8 3a7m_A Flagellar protein FLIT; 32.1 1.2E+02 0.0042 22.9 6.3 54 126-183 11-72 (122)
9 3bpj_A Eukaryotic translation 28.3 30 0.001 24.6 2.1 35 146-180 13-49 (80)
10 2zu6_B Programmed cell death p 27.9 35 0.0012 29.5 2.8 44 128-177 1-44 (307)
11 2jyl_A Capsid protein P24 (Ca) 27.2 49 0.0017 24.8 3.2 48 123-175 32-79 (105)
12 3nkz_A Flagellar protein FLIT; 25.6 84 0.0029 23.8 4.3 53 126-182 14-74 (123)
13 3h3m_A Flagellar protein FLIT; 21.6 1.1E+02 0.0036 23.5 4.2 35 124-162 22-56 (126)
14 2xwv_A Sialic acid-binding per 21.4 50 0.0017 27.6 2.5 40 126-169 272-311 (312)
No 1
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=75.79 E-value=2.2 Score=32.37 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 043344 125 PYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFA 176 (194)
Q Consensus 125 Py~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~ 176 (194)
|-++|++.|..+|.|---. .+++|-.+|.=.||.+.+|..+|.-.+
T Consensus 2 p~eel~kki~~ll~EY~~~------~D~~Ea~~cl~eL~~p~f~~e~V~~~i 47 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAI 47 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 6789999999999987431 269999999999998887776665443
No 2
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.46 E-value=2.5 Score=33.13 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 043344 124 DPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFAD 177 (194)
Q Consensus 124 DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~D 177 (194)
.|-++|++.|..+|.|---. .+++|-.+|.=.||.+.+|..+|.-.+.
T Consensus 3 ~~~eel~kki~~lL~EY~~~------~D~~EA~~cl~EL~~p~f~~e~V~~~i~ 50 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAIV 50 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999987431 2699999999999988887766654443
No 3
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=72.07 E-value=4.3 Score=32.15 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 043344 125 PYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADL 178 (194)
Q Consensus 125 Py~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 178 (194)
+-++|++.+..+|.|.=-. .+++|.+.|.=.||.+.+|..+|+..+..
T Consensus 5 s~ee~~kk~~~ii~EYf~~------~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~ 52 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEH------GDTNEVAEMLRDLNLGEMKSGVPVLAVSL 52 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCSGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 5679999999999987331 26899999999999999999888776543
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.73 E-value=21 Score=30.91 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 043344 124 DPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADL 178 (194)
Q Consensus 124 DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 178 (194)
-|-++|++-|..++.|--.. .+++|-.+|.=.||.+.+|..+|+..+..
T Consensus 160 ~~~eelkkki~~lL~EY~~~------~D~~EA~~ci~EL~~p~f~~e~V~~ai~~ 208 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAIIM 208 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 47789999999999987432 26999999999999888887766654443
No 5
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=38.68 E-value=47 Score=29.53 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 043344 122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFAD 177 (194)
Q Consensus 122 S~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~D 177 (194)
...|-+++++-|..+|.|--. ..+++|-.+|.-.||.+.+|..+|.-.+.
T Consensus 209 ~~~~veelkkki~~lL~EY~~------s~D~~EA~~ci~EL~~p~fhhe~V~~av~ 258 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLL------SGDISEAEHCLKELEVPHFHHELVYEAIV 258 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHCCTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcc------CCCHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 346899999999999998753 23799999999999988877766654443
No 6
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.04 E-value=31 Score=30.70 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 043344 127 VDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADL 178 (194)
Q Consensus 127 ~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 178 (194)
++|++-...+|.|-=.. .+++|.+.|.=.||.+.+|..+|+-++..
T Consensus 51 ee~~k~~~~ii~EYf~~------~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEYFEH------GDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHHHHH------CCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC------CCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 79999999999887432 26899999999999999998888766553
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.77 E-value=37 Score=29.09 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 043344 125 PYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAF 175 (194)
Q Consensus 125 Py~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF 175 (194)
+-++|++.|..+|.|-=-. .+++|-+.|.-.||.+.+|..+|...
T Consensus 6 s~ee~~k~~~~ll~Ey~~~------~d~~Ea~~ci~el~~p~~~~~~v~~~ 50 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHL------NDMKEAVQCVQELASPSLLFIFVRHG 50 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 4578999999999876321 15789999999999986666555443
No 8
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=32.08 E-value=1.2e+02 Score=22.88 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHc--------CCCCChHHHHHHHHHHHHHhc
Q 043344 126 YVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLAL--------NPKTTHKFIISAFADLLVSLM 183 (194)
Q Consensus 126 y~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~L--------N~~~~H~~Iv~AF~Dl~~~L~ 183 (194)
|..-...-.+|+++-.- +|||.|-+|=.-|+.+ -+......+.+.+.+++..+.
T Consensus 11 Yq~i~~lS~~ML~aA~~----gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~IL 72 (122)
T 3a7m_A 11 WQRIALLSQSLLELAQR----GEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTL 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 66666777888876654 5799999999999975 233456667777777766654
No 9
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=28.30 E-value=30 Score=24.58 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHH
Q 043344 146 KANWDCLHELLLCYLALNPKTTHK--FIISAFADLLV 180 (194)
Q Consensus 146 ~~dw~~LeELL~cYL~LN~~~~H~--~Iv~AF~Dl~~ 180 (194)
+.||+.|.++|...|.-+.+..|= +|..-+.++|.
T Consensus 13 k~dF~~~~~~l~~kl~~~~ks~~y~~f~~~lir~l~~ 49 (80)
T 3bpj_A 13 RDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCI 49 (80)
T ss_dssp HHHHHHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHc
Confidence 467899999999999888776663 33333344443
No 10
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.88 E-value=35 Score=29.49 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 043344 128 DFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFAD 177 (194)
Q Consensus 128 DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~D 177 (194)
||++-+..+|.|-=.. .+++|.+.|.=.||.+.+|..+|+-.+.
T Consensus 1 e~~k~~~~ii~EYf~~------~d~~Ea~~~l~el~~p~~~~~~v~~~i~ 44 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEH------GDTNEVAEMLRDLNLGEMKSGVPVLAVS 44 (307)
T ss_dssp CHHHHHHHHHHHHHHH------CCHHHHHHHHHTTCCGGGGGGHHHHHHH
T ss_pred ChHHHHHHHHHHHHcC------CCHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 5888888888876331 2689999999999999999888887654
No 11
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=27.17 E-value=49 Score=24.78 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 043344 123 PDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAF 175 (194)
Q Consensus 123 ~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF 175 (194)
..||+||-.-..+-+++.......+.| |-+-|. |=..|+.. +.|+++.
T Consensus 32 KEPf~dyVdR~~k~l~ae~~~~~vK~~--mt~tL~-~qNANpdC--k~ilk~l 79 (105)
T 2jyl_A 32 KEPFRDYVDRFYKTLRAEQASQEVKNA--ATETLL-VQNANPDC--KTILKAL 79 (105)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCTTTTTS--CHHHHH-HHTSCHHH--HHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhhcchhhHHH--hhhhhh-HhhcCcch--hhHHHcc
Confidence 479999999999999887665433445 444442 55555443 5566664
No 12
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=25.55 E-value=84 Score=23.84 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcC--------CCCChHHHHHHHHHHHHHh
Q 043344 126 YVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALN--------PKTTHKFIISAFADLLVSL 182 (194)
Q Consensus 126 y~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN--------~~~~H~~Iv~AF~Dl~~~L 182 (194)
|..--..-.+|+++-.- +|||.|-+|=..|+.+= +......+.+...+++..+
T Consensus 14 Y~~il~lS~~ML~aA~~----gdWD~Lv~lE~~y~~lVe~L~~~~~~~~ls~~~~~~~~~lL~~I 74 (123)
T 3nkz_A 14 YQQILTLSEQMLVLATE----GNWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRAI 74 (123)
T ss_dssp HHHHHHHHHHHHHHHTT----SCTTHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 66666777889887664 57999999999998641 1223344444555555444
No 13
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=21.64 E-value=1.1e+02 Score=23.49 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHc
Q 043344 124 DPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLAL 162 (194)
Q Consensus 124 DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~L 162 (194)
+=|..--..-.+|+++-.- +|||.|=+|=..|+.+
T Consensus 22 ~~Yq~Il~lS~~ML~aA~~----gdWD~Lv~lE~~y~~l 56 (126)
T 3h3m_A 22 EIYQDIANLTSRMLAAANA----SNWDLVLNHGQEYVCL 56 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----CcHHHHHHHHHHHHHH
Confidence 3467777777889887654 5799999999999853
No 14
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=21.44 E-value=50 Score=27.62 Aligned_cols=40 Identities=23% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChH
Q 043344 126 YVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHK 169 (194)
Q Consensus 126 y~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~ 169 (194)
...||+.+..+..+..-. ....-++||..|+..|+.+||.
T Consensus 272 ~~~~~~a~~~v~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~ 311 (312)
T 2xwv_A 272 LVPFKESMKPYYAEFVKQ----TGQKGESALKQIEAINPHHHHH 311 (312)
T ss_dssp SHHHHHHTHHHHHHHHHH----HHHHHHHHHHHHHTSCCSCC--
T ss_pred HHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHhCcccccC
Confidence 467888887777653110 0124678999999999998885
Done!