Query 043344
Match_columns 194
No_of_seqs 124 out of 227
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 06:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043344.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043344hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 77.0 0.91 6.7E-05 32.8 3.4 48 125-178 2-49 (129)
2 d1ug3a1 a.118.1.14 (A:1235-142 48.6 7.9 0.00057 29.1 3.9 46 127-178 7-52 (193)
3 d2eiaa1 a.28.3.1 (A:148-222) E 40.5 11 0.00077 25.0 3.1 47 122-173 10-56 (75)
4 d1d1da1 a.28.3.1 (A:151-230) R 22.9 60 0.0043 21.5 4.6 48 122-174 10-57 (80)
5 d1qrjb1 a.28.3.1 (B:131-214) H 20.2 56 0.0041 21.8 4.0 49 122-175 10-58 (84)
6 d1ugpa_ d.149.1.1 (A:) Cobalt- 19.8 34 0.0025 26.9 3.1 45 130-178 20-65 (203)
7 d1iqpa1 a.80.1.1 (A:233-327) R 17.9 1.1E+02 0.0079 19.6 5.1 60 124-187 17-77 (95)
8 d1v29a_ d.149.1.1 (A:) Cobalt- 17.5 34 0.0025 26.9 2.6 50 124-177 10-63 (203)
9 d2i5ha1 e.71.1.1 (A:16-195) Hy 17.0 19 0.0014 27.8 1.0 23 130-156 125-147 (180)
10 d2qdya1 d.149.1.1 (A:10-206) I 15.5 67 0.0049 25.0 3.9 52 122-177 6-58 (197)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=76.99 E-value=0.91 Score=32.81 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 043344 125 PYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADL 178 (194)
Q Consensus 125 Py~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 178 (194)
|-..+++.|..||.|--.- .+++|.+.|.-.||.+.+|..+|...+.+
T Consensus 2 pv~~l~kk~~~ll~EY~~~------~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ 49 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYLLS------GDISEAEHCLKELEVPHFHHELVYEAIVM 49 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 4456899999999987542 26899999999999988777666554443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.55 E-value=7.9 Score=29.06 Aligned_cols=46 Identities=9% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 043344 127 VDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADL 178 (194)
Q Consensus 127 ~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 178 (194)
+||++-+..+|.|-=-. .++.|.+.|.=.||.+.+|..+|...+..
T Consensus 7 ee~~kk~~~il~Ey~~~------~D~~Ea~~~l~el~~p~~~~~~V~~~i~~ 52 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHL------NDMKEAVQCVQELASPSLLFIFVRHGVES 52 (193)
T ss_dssp HHHHHHHHHHHHHHHHH------CCHHHHHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC------CCHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 68999999999874221 15789999999999988887766655443
No 3
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=40.52 E-value=11 Score=25.01 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHH
Q 043344 122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIIS 173 (194)
Q Consensus 122 S~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~ 173 (194)
...||+||-..+.+-++........+.| |-+-| +|=..|+.. +.|++
T Consensus 10 pkEpf~dfVdRl~~a~~~~~~~~~~k~~--~~~~L-~~qNANpdC--k~iLr 56 (75)
T d2eiaa1 10 AKEPYPEFVDRLLSQIKSEGHPQEISKF--LTDTL-TIQNANEEC--RNAMR 56 (75)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCHHHHHH--HHHHH-HHHTSCTTT--TTTTT
T ss_pred CCCCHHHHHHHHHHHHHhhcCcHhHHHH--HHHHH-hHhcCCHHH--HHHHH
Confidence 5689999999999999987654322223 33333 577777765 44443
No 4
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=22.88 E-value=60 Score=21.53 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 043344 122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISA 174 (194)
Q Consensus 122 S~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~A 174 (194)
..+||+||..-..+-++..........| -++.|| .=|+..-=+.|++|
T Consensus 10 pkEpf~dfVdRl~~al~~~~~~~~~k~~-~~~~L~----~qNANpdCk~iLra 57 (80)
T d1d1da1 10 PSESFVDFANRLIKAVEGSDLPPSARAP-VIIDCF----RQKSQPDIQQLIRA 57 (80)
T ss_dssp SSSCHHHHHHHHHHHHHTSSCCTTTTTH-HHHHHH----TTSSCHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHH----HHhcCHHHHHHHHh
Confidence 5689999999999999987664433334 344443 33555444555553
No 5
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=20.19 E-value=56 Score=21.85 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 043344 122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAF 175 (194)
Q Consensus 122 S~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF 175 (194)
...||.||-.-..+-|+.........+| |+..-+.=|+..-=+.|+++.
T Consensus 10 pkEpf~dfVdRl~~a~~~~~~~~~~k~~-----l~~~L~~qNANpdCk~~lr~l 58 (84)
T d1qrjb1 10 LEEPYHAFVERLNIALDNGLPEGTPKDP-----ILRSLAYSNANKECQKLLQAR 58 (84)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCTTSCCHH-----HHHHHHTTTBCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHHHcccHHHHHHHHhc
Confidence 4689999999999999876554322223 233333345544445555543
No 6
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=19.77 E-value=34 Score=26.92 Aligned_cols=45 Identities=13% Similarity=0.329 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCCCcCCChHHHHHHHHHHHH-cCCCCChHHHHHHHHHH
Q 043344 130 RRSMQEMVEARDLFDVKANWDCLHELLLCYLA-LNPKTTHKFIISAFADL 178 (194)
Q Consensus 130 R~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~-LN~~~~H~~Iv~AF~Dl 178 (194)
-+-+++...++|+.+ .+++.+++..|-. +.+..==++|-+|.+|-
T Consensus 20 vkAle~lLieKGli~----~~~id~~ie~~e~~vgP~~GArVVARAW~Dp 65 (203)
T d1ugpa_ 20 VKALESMLIEQGILT----TSMIDRMAEIYENEVGPHLGAKVVVKAWTDP 65 (203)
T ss_dssp HHHHHHHHHHTTSCC----HHHHHHHHHHHHHTSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHHHHHHhccCCcchHHHHHHHhCCH
Confidence 356778888999965 6899999999997 67777778888887764
No 7
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=17.86 E-value=1.1e+02 Score=19.59 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHhcCCCC
Q 043344 124 DPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNP-KTTHKFIISAFADLLVSLMSPPD 187 (194)
Q Consensus 124 DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~-~~~H~~Iv~AF~Dl~~~L~s~~~ 187 (194)
..+.+=+.-+.+++.++|+.. -+-|.+|-...+.++= ......|+....++-..|..+.+
T Consensus 17 ~~f~~a~~~l~~l~~~~G~s~----~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~d~rL~~G~~ 77 (95)
T d1iqpa1 17 GNFLKAREKLREILLKQGLSG----EDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGAN 77 (95)
T ss_dssp TCHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 557777888889999999853 3556666665555552 33355688888888777776654
No 8
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=17.48 E-value=34 Score=26.85 Aligned_cols=50 Identities=18% Similarity=0.398 Sum_probs=39.3
Q ss_pred CcHHHH---HHHHHHHHHhcCCCCcCCChHHHHHHHHHHHH-cCCCCChHHHHHHHHH
Q 043344 124 DPYVDF---RRSMQEMVEARDLFDVKANWDCLHELLLCYLA-LNPKTTHKFIISAFAD 177 (194)
Q Consensus 124 DPy~DF---R~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~-LN~~~~H~~Iv~AF~D 177 (194)
.|..|| -+.+++...++|+.+ .+++++.+..|-. +++..==++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit----~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLS----SDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 466664 357888888999965 6899999999997 5777777888887665
No 9
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=17.00 E-value=19 Score=27.77 Aligned_cols=23 Identities=13% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCCcCCChHHHHHHH
Q 043344 130 RRSMQEMVEARDLFDVKANWDCLHELL 156 (194)
Q Consensus 130 R~SM~EMI~e~~l~~~~~dw~~LeELL 156 (194)
++-|.+||++++-.. |+.+++|=
T Consensus 125 kk~~~~iveeR~~~~----f~sf~dl~ 147 (180)
T d2i5ha1 125 KKMMWAIIEERKKRP----FESFEDIA 147 (180)
T ss_dssp HHHHHHHHHHHHHSC----CCSHHHHH
T ss_pred HHHHHHHHHHHccCC----CCCHHHHH
Confidence 578999999998643 78888774
No 10
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=15.55 E-value=67 Score=24.96 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=41.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHc-CCCCChHHHHHHHHH
Q 043344 122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLAL-NPKTTHKFIISAFAD 177 (194)
Q Consensus 122 S~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~L-N~~~~H~~Iv~AF~D 177 (194)
..+|..+=-+.++++..++|+.+ .+.+.+++..|-.- .+..-=++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~----~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVP----DGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSC----TTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 35788888899999999999965 57999999999765 455556677777766
Done!