BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043345
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 64/79 (81%)
Query: 1 DQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60
DQQ VDF KV HVHQLKGSSSSIGAQRV N C FRSFCE++N+E C + LQ +KQEYY
Sbjct: 70 DQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYY 129
Query: 61 LVKNKLQTLFQVCLKSLAS 79
LVKN+L+TLF++ + +AS
Sbjct: 130 LVKNRLETLFKLEQQIVAS 148
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 1 DQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60
DQQ++DF KV HVHQ KGSS+SIGAQRV N C AFR+FCEE+NI+ C++ LQ +KQEY
Sbjct: 65 DQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYL 124
Query: 61 LVKNKLQTLFQV 72
LVKNKL+TL ++
Sbjct: 125 LVKNKLETLLRL 136
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 DQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60
DQ VDF KV +VHQLKGSS+S+GAQ+V C FR C+++N +GC L ++ E+Y
Sbjct: 66 DQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNEFY 125
Query: 61 LVKNKLQTLF 70
++NK QT+
Sbjct: 126 DLRNKFQTML 135
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 51/72 (70%)
Query: 1 DQQNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60
+Q V+F KV +VHQLKGSS+S+GAQ+V C FR FC++++ +GC L ++ ++Y
Sbjct: 66 EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125
Query: 61 LVKNKLQTLFQV 72
++NK QT+ Q+
Sbjct: 126 DLRNKFQTMLQL 137
>pdb|2R25|A Chain A, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 167
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 6 DFTKVGGHVHQLKGSSSSIGAQRVNNVC 33
+ T++ H LKGSS+++G QR+ VC
Sbjct: 55 NLTELDNLGHFLKGSSAALGLQRIAWVC 82
>pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
pdb|1QSP|B Chain B, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
Length = 165
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 6 DFTKVGGHVHQLKGSSSSIGAQRVNNVC 33
+ T++ H LKGSS+++G QR+ VC
Sbjct: 53 NLTELDNLGHFLKGSSAALGLQRIAWVC 80
>pdb|1C02|A Chain A, Crystal Structure Of Yeast Ypd1p
pdb|1C02|B Chain B, Crystal Structure Of Yeast Ypd1p
Length = 166
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 6 DFTKVGGHVHQLKGSSSSIGAQRVNNVC 33
+ T++ H LKGSS+++G QR+ VC
Sbjct: 54 NLTELDNLGHFLKGSSAALGLQRIAWVC 81
>pdb|1SR2|A Chain A, Solution Structure Of The Escherichia Coli Yojn Histidine-
Phosphotransferase (Hpt) Domain
Length = 116
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 6 DFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHL 55
DF + H+LKG + + +C E+++ G ++Y+ +
Sbjct: 59 DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDI 108
>pdb|1OXB|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain
In Space Group P2(1)2(1)2(1)
pdb|1OXK|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain
In Space Group P3(2)
pdb|1OXK|C Chain C, Complex Between Ypd1 And Sln1 Response Regulator Domain
In Space Group P3(2)
pdb|1OXK|E Chain E, Complex Between Ypd1 And Sln1 Response Regulator Domain
In Space Group P3(2)
pdb|1OXK|G Chain G, Complex Between Ypd1 And Sln1 Response Regulator Domain
In Space Group P3(2)
pdb|1OXK|I Chain I, Complex Between Ypd1 And Sln1 Response Regulator Domain
In Space Group P3(2)
pdb|1OXK|K Chain K, Complex Between Ypd1 And Sln1 Response Regulator Domain
In Space Group P3(2)
Length = 166
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 6 DFTKVGGHVHQLKGSSSSIGAQRVNNVC 33
+ T++ H LKGSS+++G QR+ VC
Sbjct: 54 NLTELDNLGHFLKGSSAALGLQRIAWVC 81
>pdb|1C03|A Chain A, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|B Chain B, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|C Chain C, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|D Chain D, Crystal Structure Of Ypd1p (Triclinic Form)
Length = 168
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 6 DFTKVGGHVHQLKGSSSSIGAQRVNNVC 33
+ T++ H LKGSS+++G QR+ VC
Sbjct: 55 NLTELDNLGHFLKGSSAALGLQRIAWVC 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,103,542
Number of Sequences: 62578
Number of extensions: 59815
Number of successful extensions: 169
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)