Query 043345
Match_columns 80
No_of_seqs 126 out of 574
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 99.9 1.9E-22 6.5E-27 127.1 10.7 76 4-79 68-143 (153)
2 1yvi_A Histidine-containing ph 99.9 5.4E-22 1.8E-26 124.2 10.4 75 5-79 70-144 (149)
3 2r25_A Phosphorelay intermedia 99.7 9.6E-18 3.3E-22 106.9 7.3 69 4-72 53-165 (167)
4 2a0b_A HPT domain; sensory tra 99.6 2.8E-16 9.5E-21 95.2 6.2 69 4-72 53-121 (125)
5 3myf_A Sensor protein; HPT, hi 99.6 1E-15 3.5E-20 92.7 8.4 69 4-72 46-115 (119)
6 3iqt_A Signal transduction his 99.6 2.6E-15 8.7E-20 91.5 5.9 67 4-70 55-122 (123)
7 1sr2_A Putative sensor-like hi 99.6 1E-14 3.5E-19 88.0 7.9 59 4-62 57-115 (116)
8 1y6d_A Phosphorelay protein LU 99.4 2.1E-14 7.2E-19 86.9 1.7 67 3-69 52-118 (120)
9 2ooc_A Histidine phosphotransf 99.4 3.8E-13 1.3E-17 80.7 6.5 57 11-72 53-109 (113)
10 1tqg_A Chemotaxis protein CHEA 99.4 4.8E-13 1.7E-17 78.6 6.8 65 4-68 35-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.2 1.1E-11 3.9E-16 76.4 5.8 66 4-69 34-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.2 2.9E-11 9.8E-16 75.2 6.9 66 4-69 37-105 (146)
13 2lch_A Protein OR38; structura 99.2 2.4E-11 8.1E-16 72.3 5.5 63 5-67 37-102 (113)
14 3kyj_A CHEA3, putative histidi 98.8 1.5E-08 5.3E-13 62.8 7.3 65 7-71 44-111 (144)
15 2lp4_A Chemotaxis protein CHEA 98.6 1.4E-07 4.8E-12 61.9 6.9 63 6-68 39-104 (225)
16 1gp8_A Protein (scaffolding pr 77.0 1.7 5.8E-05 20.9 1.9 17 3-19 22-38 (40)
17 1wjt_A Transcription elongatio 74.6 3.3 0.00011 23.8 3.2 38 20-57 5-42 (103)
18 3swf_A CGMP-gated cation chann 71.4 10 0.00035 20.6 6.5 31 47-77 18-49 (74)
19 1vyk_A Oxygen-evolving enhance 65.7 20 0.0007 21.9 6.6 38 27-64 109-146 (149)
20 3nkz_A Flagellar protein FLIT; 54.7 30 0.001 20.3 7.2 23 27-49 15-37 (123)
21 3a7m_A Flagellar protein FLIT; 54.2 31 0.001 20.2 8.2 51 27-77 12-79 (122)
22 3zbh_A ESXA; unknown function, 52.2 25 0.00086 18.6 7.4 68 4-72 8-78 (99)
23 3p9y_A CG14216, LD40846P; phos 50.7 17 0.00057 23.4 3.3 17 22-38 152-168 (198)
24 4ioe_A Secreted protein ESXB; 49.1 28 0.00096 18.3 5.3 68 4-74 8-80 (93)
25 3fkr_A L-2-keto-3-deoxyarabona 47.5 21 0.00072 23.9 3.6 42 18-59 210-251 (309)
26 3gwk_C SAG1039, putative uncha 46.4 33 0.0011 18.3 7.8 70 4-74 7-79 (98)
27 2vs0_A Virulence factor ESXA; 46.3 32 0.0011 18.1 7.9 71 4-75 5-78 (97)
28 1txp_A HnRNP C, heterogeneous 42.6 23 0.0008 15.6 3.1 21 53-73 2-22 (28)
29 3h3m_A Flagellar protein FLIT; 42.5 51 0.0017 19.4 8.1 24 27-50 25-48 (126)
30 3kyz_A Sensor protein PFES; AP 41.4 45 0.0015 19.8 4.0 30 28-57 22-51 (125)
31 3dz1_A Dihydrodipicolinate syn 38.9 24 0.0008 23.6 2.8 42 18-59 211-252 (313)
32 3m50_P N.plumbaginifolia H+-tr 37.2 7.3 0.00025 17.7 0.0 8 13-20 3-10 (31)
33 4h3k_B RNA polymerase II subun 36.6 31 0.0011 22.4 2.9 19 21-39 167-185 (214)
34 3twe_A Alpha4H; unknown functi 34.5 31 0.0011 14.6 3.4 14 52-65 10-23 (27)
35 3uo3_A J-type CO-chaperone JAC 34.4 82 0.0028 19.4 5.6 26 43-68 118-143 (181)
36 2r91_A 2-keto-3-deoxy-(6-phosp 33.9 76 0.0026 20.7 4.7 41 19-59 189-231 (286)
37 3de8_A Soluble cytochrome B562 33.8 63 0.0021 17.9 5.1 36 26-61 65-100 (106)
38 3h5d_A DHDPS, dihydrodipicolin 32.3 79 0.0027 21.0 4.6 43 18-60 203-247 (311)
39 1xky_A Dihydrodipicolinate syn 30.8 98 0.0033 20.4 4.8 41 19-59 209-251 (301)
40 3t9o_A DGC, diguanylate cyclas 30.4 83 0.0028 18.3 6.2 42 28-71 82-123 (135)
41 2d0t_A Indoleamine 2,3-dioxyge 30.4 1.2E+02 0.0042 21.1 5.4 34 38-71 189-222 (406)
42 2wkj_A N-acetylneuraminate lya 28.7 1.3E+02 0.0044 19.9 5.8 42 19-60 208-251 (303)
43 1w3i_A EDA, 2-keto-3-deoxy glu 28.5 88 0.003 20.5 4.3 41 19-59 190-232 (293)
44 3ulq_A Response regulator aspa 27.6 1.2E+02 0.0043 19.4 6.1 42 21-62 4-45 (383)
45 3etw_A Adhesin A; antiparallel 27.4 98 0.0034 18.1 5.6 45 34-78 55-99 (119)
46 1ug7_A 2610208M17RIK protein; 26.5 98 0.0034 18.4 3.8 20 28-47 15-34 (128)
47 2p32_A Heat shock 70 kDa prote 26.4 93 0.0032 17.5 6.3 56 9-64 22-89 (120)
48 3at7_A Alginate-binding flagel 25.2 1.5E+02 0.0052 19.5 5.4 51 25-75 45-95 (283)
49 1f6k_A N-acetylneuraminate lya 25.2 1.5E+02 0.005 19.4 5.1 42 19-60 200-243 (293)
50 4ew8_A Sensor protein DIVL; si 25.1 1.2E+02 0.0042 18.4 8.2 58 9-74 43-101 (268)
51 4i1l_A Scurfin, forkhead box p 24.7 1E+02 0.0035 17.4 5.3 46 32-78 23-70 (93)
52 3na8_A Putative dihydrodipicol 24.4 90 0.0031 20.8 3.8 42 19-60 222-265 (315)
53 3l21_A DHDPS, dihydrodipicolin 23.3 1.7E+02 0.0057 19.3 5.3 42 19-60 210-253 (304)
54 3txs_A Terminase DNA packaging 22.5 1.1E+02 0.0039 17.2 8.0 64 5-76 24-87 (94)
55 3swy_A Cyclic nucleotide-gated 22.1 82 0.0028 15.4 6.1 20 48-67 17-36 (46)
56 3eb2_A Putative dihydrodipicol 21.9 85 0.0029 20.7 3.2 41 19-59 201-243 (300)
57 3fav_B ESAT-6, 6 kDa early sec 21.0 1E+02 0.0035 16.1 5.3 63 4-71 4-73 (94)
58 3ls0_A SLL1638 protein, PSBQ; 20.7 1.5E+02 0.005 17.7 5.9 62 4-72 49-128 (133)
59 3zsu_A TLL2057 protein, cyanoq 20.4 1.5E+02 0.005 17.6 5.9 62 4-72 46-125 (130)
60 2rfg_A Dihydrodipicolinate syn 20.0 1.1E+02 0.0038 20.1 3.5 31 29-59 209-239 (297)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=99.89 E-value=1.9e-22 Score=127.06 Aligned_cols=76 Identities=61% Similarity=1.004 Sum_probs=73.5
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQVCLKSLAS 79 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~~ 79 (80)
+.||+.+.+++|+|||||+||||.+|+.+|..||.+++.++.+++...+++|+.+|..++.+|++|+++|||+.++
T Consensus 68 ~~D~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~ 143 (153)
T 3us6_A 68 SIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAA 143 (153)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3499999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.88 E-value=5.4e-22 Score=124.20 Aligned_cols=75 Identities=43% Similarity=0.769 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 043345 5 VDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQVCLKSLAS 79 (80)
Q Consensus 5 ~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~~ 79 (80)
.||+.+..++|+|||||+||||.+|+..|.+||..++.++.+++...+.+|+.+|..+..+|++|+++||||+++
T Consensus 70 ~D~~~l~~~aH~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~ 144 (149)
T 1yvi_A 70 VNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAY 144 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.73 E-value=9.6e-18 Score=106.94 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcC------------HH-------------------------
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERN------------IE------------------------- 46 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~------------~~------------------------- 46 (80)
++||..+..++|+|||||+||||.+|..+|.+||.+++.++ .+
T Consensus 53 ~~D~~~L~~~aH~LKGSSAnLGA~rV~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (167)
T 2r25_A 53 EKNLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKD 132 (167)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCC
T ss_pred ccCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccc
Confidence 68999999999999999999999999999999999999999 43
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 47 -------GCQQYLQHLKQEYYLVKNKLQTLFQV 72 (80)
Q Consensus 47 -------~~~~~~~~l~~~~~~l~~~L~~~l~~ 72 (80)
.|...+++++.+|..++.+|+.|++.
T Consensus 133 ~~~~~l~~i~~~L~~~k~e~~~~~~~L~~~~~~ 165 (167)
T 2r25_A 133 ENSIYLILIAKALNQSRLEFKLARIELSKYYNT 165 (167)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 68899999999999999999999864
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.65 E-value=2.8e-16 Score=95.17 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQV 72 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~ 72 (80)
..|+..+.+.+|+|||+|+|+|+..|..+|..+|..++.++.+++...+..|...|......|..|+..
T Consensus 53 ~~d~~~~~~~aH~LKGsa~~lG~~~l~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 121 (125)
T 2a0b_A 53 AQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 121 (125)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999999999999998864
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.64 E-value=1e-15 Score=92.67 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNI-EGCQQYLQHLKQEYYLVKNKLQTLFQV 72 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~l~~ 72 (80)
.+||+.+.+++|+|||+|+++|+++|..+|..||.+++.++. +.+...+..|..++..+...++.|+..
T Consensus 46 ~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 46 QNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999874 577888999999999999999999874
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.58 E-value=2.6e-15 Score=91.48 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIE-GCQQYLQHLKQEYYLVKNKLQTLF 70 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~l 70 (80)
..||+.+.+++|+|||+|+++|+++|..+|..||+.++.++.. .+...+..|..++..+....+.|+
T Consensus 55 ~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 55 GENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp TCCCTTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998865 777888999999999999888875
No 7
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.57 E-value=1e-14 Score=88.04 Aligned_cols=59 Identities=17% Similarity=0.414 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLV 62 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l 62 (80)
.+||..+.+++|+|||+++++|++.|..+|.+||..++.++..++...+..|...+.++
T Consensus 57 ~~D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~~L~~~l~~L 115 (116)
T 1sr2_A 57 TSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSL 115 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999999999999988888888888777654
No 8
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.44 E-value=2.1e-14 Score=86.93 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=50.6
Q ss_pred CchhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 3 QNVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTL 69 (80)
Q Consensus 3 ~~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 69 (80)
+..|+..+.+.+|+|||||+++|+..|...|..+|..+++|+...+......+...+......+..+
T Consensus 52 ~~~~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 52 GSEQLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999999999887744334444444444444444433
No 9
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.42 E-value=3.8e-13 Score=80.66 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=51.0
Q ss_pred HHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 11 GGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQV 72 (80)
Q Consensus 11 ~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~ 72 (80)
.+++|+|||||+||||..|...|..||..++. ....++.|...+..+...|..+++.
T Consensus 53 ~~~aH~LKGsA~~iGA~~l~~~c~~lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~ 109 (113)
T 2ooc_A 53 KDAVHTVKGAARGVGAFNLGEVCERCEAGQES-----LEGVRTALDAALLDIAAYAHEQALR 109 (113)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999998876 4566888999999999988887764
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.42 E-value=4.8e-13 Score=78.63 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=56.1
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFC---EERNIEGCQQYLQHLKQEYYLVKNKLQT 68 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 68 (80)
..++..+.+.+|+|||+|+++|+..|..+|..+|... +.++.......++.|...++.+...+..
T Consensus 35 ~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 35 MELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999876 7777776777888888888888776654
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.25 E-value=1.1e-11 Score=76.37 Aligned_cols=66 Identities=12% Similarity=0.255 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFC---EERNIEGCQQYLQHLKQEYYLVKNKLQTL 69 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 69 (80)
..++..+.+.+|+|||+|+++|+..|..+|..+|... +.++.......++.|...++.+...+..+
T Consensus 34 ~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 34 MELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999865 67766555566777777777777766554
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.23 E-value=2.9e-11 Score=75.16 Aligned_cols=66 Identities=8% Similarity=0.203 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSF---CEERNIEGCQQYLQHLKQEYYLVKNKLQTL 69 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 69 (80)
..++..+.+.+|+|||+|+++|+..|..+|..+|.. .+.++......+++.|...++.+...+..+
T Consensus 37 ~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~l~~~l~~~~D~l~~~l~~~ 105 (146)
T 1i5n_A 37 AEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAY 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999987 577765555556666666666666655443
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.20 E-value=2.4e-11 Score=72.34 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHH---HHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 5 VDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRS---FCEERNIEGCQQYLQHLKQEYYLVKNKLQ 67 (80)
Q Consensus 5 ~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~---~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 67 (80)
.++..+.+.+|+|||+|+++|+..|..+|..+|. ..+.+.......+++.|...++.+...+.
T Consensus 37 ~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 37 EYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999997 44677666666778888888877777554
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=98.82 E-value=1.5e-08 Score=62.82 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 7 FTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFC---EERNIEGCQQYLQHLKQEYYLVKNKLQTLFQ 71 (80)
Q Consensus 7 ~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~ 71 (80)
...+.+.+|+|||+|+++|+..|..+|..+|... +.+...-...+++.|...++.+...+..+-.
T Consensus 44 l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~dlll~~~D~l~~lv~~~~~ 111 (144)
T 3kyj_A 44 VGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILLFASDTLRAMLEETAA 111 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999865 5665544456667777777776665555443
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.60 E-value=1.4e-07 Score=61.87 Aligned_cols=63 Identities=8% Similarity=0.213 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 6 DFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFC---EERNIEGCQQYLQHLKQEYYLVKNKLQT 68 (80)
Q Consensus 6 D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 68 (80)
....+.+.+|+|||+|+.+|+..|..+|..+|... ++|...--..+++-|...++.+..-+..
T Consensus 39 ~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~~ll~~~~D~l~~~l~~ 104 (225)
T 2lp4_A 39 QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDA 104 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999766 5555443345556666666655554443
No 16
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=77.04 E-value=1.7 Score=20.92 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=15.1
Q ss_pred CchhHHHHHHHHHHhhh
Q 043345 3 QNVDFTKVGGHVHQLKG 19 (80)
Q Consensus 3 ~~~D~~~~~~laH~LKG 19 (80)
..+||+++..|=|.||+
T Consensus 22 seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 22 SKGDVETYRKLKAKLKG 38 (40)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHh
Confidence 46899999999999987
No 17
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=74.58 E-value=3.3 Score=23.79 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=27.6
Q ss_pred hhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043345 20 SSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQ 57 (80)
Q Consensus 20 ss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~ 57 (80)
+|+.-....|..++..|+.++...+.+.+..++..|+.
T Consensus 5 ~~~M~~e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~ 42 (103)
T 1wjt_A 5 SSGMGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNS 42 (103)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 33333466888999999998877777777777777743
No 18
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=71.39 E-value=10 Score=20.64 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh
Q 043345 47 GCQQYLQHLKQEYYLVKNKLQ-TLFQVCLKSL 77 (80)
Q Consensus 47 ~~~~~~~~l~~~~~~l~~~L~-~~l~~~~~~~ 77 (80)
-+...|.+|-.+|...+.+|. +.-.+|++.+
T Consensus 18 ~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 18 LLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667777777777777773 4445566554
No 19
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=65.65 E-value=20 Score=21.87 Aligned_cols=38 Identities=5% Similarity=0.040 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 043345 27 QRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKN 64 (80)
Q Consensus 27 ~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~ 64 (80)
..|.....+|..+++..|...+...+......|+.+.+
T Consensus 109 ~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~ 146 (149)
T 1vyk_A 109 SKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLA 146 (149)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888877666655555555544443
No 20
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=54.68 E-value=30 Score=20.26 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHH
Q 043345 27 QRVNNVCTAFRSFCEERNIEGCQ 49 (80)
Q Consensus 27 ~~L~~~c~~lE~~~~~~~~~~~~ 49 (80)
..|..+..++=.+++.|+|+.+.
T Consensus 15 ~~il~lS~~ML~aA~~gdWD~Lv 37 (123)
T 3nkz_A 15 QQILTLSEQMLVLATEGNWDALV 37 (123)
T ss_dssp HHHHHHHHHHHHHHTTSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHCcHHHHH
Confidence 35677778888889999988743
No 21
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=54.17 E-value=31 Score=20.19 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHH-------HHHHH----------HHHHHHHHHHHHHHHHHHhhh
Q 043345 27 QRVNNVCTAFRSFCEERNIEGCQQY-------LQHLK----------QEYYLVKNKLQTLFQVCLKSL 77 (80)
Q Consensus 27 ~~L~~~c~~lE~~~~~~~~~~~~~~-------~~~l~----------~~~~~l~~~L~~~l~~~~~~~ 77 (80)
..|..+..++=.+++.|+|+.+..+ ++.|. ..-......|.+.|..+.+|.
T Consensus 12 q~i~~lS~~ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~IL~nDaeIr 79 (122)
T 3a7m_A 12 QRIALLSQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLK 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567788888899999999875433 33332 123445566667777776664
No 22
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=52.22 E-value=25 Score=18.64 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHh--hcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCE--ERN-IEGCQQYLQHLKQEYYLVKNKLQTLFQV 72 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~--~~~-~~~~~~~~~~l~~~~~~l~~~L~~~l~~ 72 (80)
..|++.+...+-.+...+..|-. .+..+...+..... .|. .+.....+.+....+..+...|..+-..
T Consensus 8 ~v~~~~l~~~A~~~~~~~~~i~~-~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (99)
T 3zbh_A 8 RLTPEELRGVARQYNVESSNVTE-LIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQ 78 (99)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999888766532 12222222322211 111 1234444555555555555555544333
No 23
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=50.69 E-value=17 Score=23.41 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.7
Q ss_pred hccChHHHHHHHHHHHH
Q 043345 22 SSIGAQRVNNVCTAFRS 38 (80)
Q Consensus 22 ~nlGa~~L~~~c~~lE~ 38 (80)
+.+||..+.++|..|+.
T Consensus 152 A~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999999987
No 24
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=49.13 E-value=28 Score=18.32 Aligned_cols=68 Identities=9% Similarity=0.012 Sum_probs=37.1
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIE-----GCQQYLQHLKQEYYLVKNKLQTLFQVCL 74 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~L~~~l~~~~ 74 (80)
..|++.++..|-.+++.+..|-. .+..+...+.... +.+. .....++++...+.++...|..+-...+
T Consensus 8 ~v~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~L~--~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~ 80 (93)
T 4ioe_A 8 KITPEELERIAGNFKNAAGEAQS-QINRLEGDINSLE--GQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLK 80 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--hhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988866542 2333333333332 2233 2344445555555555555554444333
No 25
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=47.54 E-value=21 Score=23.86 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=32.5
Q ss_pred hhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043345 18 KGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEY 59 (80)
Q Consensus 18 KGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 59 (80)
-|..|.|.++-+.+.|.+|=++.++||.+.+..+..++..-+
T Consensus 210 ~G~~G~i~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 251 (309)
T 3fkr_A 210 AGATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAWLPLI 251 (309)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 466666777778899999999999999998877766655443
No 26
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=46.44 E-value=33 Score=18.32 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHH--hhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFC--EER-NIEGCQQYLQHLKQEYYLVKNKLQTLFQVCL 74 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~--~~~-~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~ 74 (80)
..|++.+...|-.++..+..|-- .+..+...+.... =.| ..+.....+.++...+..+...|..+-...+
T Consensus 7 ~V~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 7 KLTPEELRSSAQKYTAGSQQVTE-VLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999988876532 2333333333332 111 2234555566666666666665555444433
No 27
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=46.31 E-value=32 Score=18.13 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=40.7
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHH--hhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFC--EERN-IEGCQQYLQHLKQEYYLVKNKLQTLFQVCLK 75 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~--~~~~-~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~ 75 (80)
..|++.+...+-.+++.+..|-. .+..+...+.... =.|. .+.....+.+....+..+...|..+-..-++
T Consensus 5 ~v~~~~l~~~A~~~~~~~~~l~~-~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 5 KMSPEEIRAKSQSYGQGSDQIRQ-ILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999998877542 2222333333221 1122 2345556666666666666666655444333
No 28
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=42.64 E-value=23 Score=15.55 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043345 53 QHLKQEYYLVKNKLQTLFQVC 73 (80)
Q Consensus 53 ~~l~~~~~~l~~~L~~~l~~~ 73 (80)
+.|+.++.++...++..|...
T Consensus 2 Q~IkkELtQIK~kvDsLLe~L 22 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENL 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666553
No 29
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=42.45 E-value=51 Score=19.38 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHH
Q 043345 27 QRVNNVCTAFRSFCEERNIEGCQQ 50 (80)
Q Consensus 27 ~~L~~~c~~lE~~~~~~~~~~~~~ 50 (80)
..|..+..++=.+++.|+|+.+..
T Consensus 25 q~Il~lS~~ML~aA~~gdWD~Lv~ 48 (126)
T 3h3m_A 25 QDIANLTSRMLAAANASNWDLVLN 48 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHH
Confidence 457778888889999999987543
No 30
>3kyz_A Sensor protein PFES; APC37897.4, the sensor domain of two-component sensor PFES, pseudomonas aeruginosa PA01, structural genomics, PSI-2; 1.50A {Pseudomonas aeruginosa}
Probab=41.38 E-value=45 Score=19.77 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043345 28 RVNNVCTAFRSFCEERNIEGCQQYLQHLKQ 57 (80)
Q Consensus 28 ~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~ 57 (80)
.|...+.+.|.+-+.|+.+++...+.+|+.
T Consensus 22 ~L~~~A~~Ae~~~~~g~~~~L~~W~~~l~~ 51 (125)
T 3kyz_A 22 YLADYARQAEDAWRREGAAGAERFRKELSA 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567778888999999998888888877765
No 31
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=38.89 E-value=24 Score=23.62 Aligned_cols=42 Identities=2% Similarity=0.046 Sum_probs=31.2
Q ss_pred hhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043345 18 KGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEY 59 (80)
Q Consensus 18 KGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 59 (80)
-|..|.|++.-..+.+.+|=++.++||.+.+..+..++..-+
T Consensus 211 ~G~~G~i~~~~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 252 (313)
T 3dz1_A 211 RGADGAMTGYCFPDMLVDVVKLSKAGQRDLAHNLFDAHLPLI 252 (313)
T ss_dssp HTCCEEEECCSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEeCcccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 355555656668889999999999999998877766665443
No 32
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=37.24 E-value=7.3 Score=17.73 Aligned_cols=8 Identities=50% Similarity=0.908 Sum_probs=5.2
Q ss_pred HHHHhhhh
Q 043345 13 HVHQLKGS 20 (80)
Q Consensus 13 laH~LKGs 20 (80)
-.|+|||-
T Consensus 3 ElhTLkgh 10 (31)
T 3m50_P 3 ELHTLKGH 10 (31)
T ss_dssp HHHCHHHH
T ss_pred hhhHHHHH
Confidence 45777764
No 33
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=36.63 E-value=31 Score=22.41 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=16.0
Q ss_pred hhccChHHHHHHHHHHHHH
Q 043345 21 SSSIGAQRVNNVCTAFRSF 39 (80)
Q Consensus 21 s~nlGa~~L~~~c~~lE~~ 39 (80)
-+.+||..+.++|..||..
T Consensus 167 eA~~Ga~~ileL~~~le~~ 185 (214)
T 4h3k_B 167 EATLGAFLICELCQCIQHT 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999863
No 34
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.49 E-value=31 Score=14.64 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 043345 52 LQHLKQEYYLVKNK 65 (80)
Q Consensus 52 ~~~l~~~~~~l~~~ 65 (80)
++.|+..+..++.+
T Consensus 10 ledlqerlrklrkk 23 (27)
T 3twe_A 10 LEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 35
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=34.45 E-value=82 Score=19.42 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=10.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 43 RNIEGCQQYLQHLKQEYYLVKNKLQT 68 (80)
Q Consensus 43 ~~~~~~~~~~~~l~~~~~~l~~~L~~ 68 (80)
.+...+..+...++..+..+...|..
T Consensus 118 ~~~~~l~~l~~~~~~~~~~~~~~l~~ 143 (181)
T 3uo3_A 118 DDEAGVKLLEKQNKERIQDIEAQLGQ 143 (181)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 36
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=33.89 E-value=76 Score=20.72 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=28.3
Q ss_pred hhhhccChHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043345 19 GSSSSIGAQR--VNNVCTAFRSFCEERNIEGCQQYLQHLKQEY 59 (80)
Q Consensus 19 Gss~nlGa~~--L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 59 (80)
|..|.+++.. +.+.+.+|-++.++||.+.+..+..++..-+
T Consensus 189 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 231 (286)
T 2r91_A 189 RLDGVVASSANYLPELLAGIRDAVAAGDIERARSLQFLLDEIV 231 (286)
T ss_dssp TCSEECCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5555555443 6778888888889999988776666555443
No 37
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=33.81 E-value=63 Score=17.89 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043345 26 AQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYL 61 (80)
Q Consensus 26 a~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~ 61 (80)
+..|......+..++..|+.+.+...+..+...-..
T Consensus 65 F~~l~~~~~~l~~aa~~gd~~~~k~a~~~v~~~Ck~ 100 (106)
T 3de8_A 65 FDILVGQIHDALHLANEGKVKEAQAAAEQLKTTCNA 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455666677777777788877777776666554433
No 38
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=32.29 E-value=79 Score=21.05 Aligned_cols=43 Identities=7% Similarity=0.090 Sum_probs=30.8
Q ss_pred hhhhhccCh--HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043345 18 KGSSSSIGA--QRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60 (80)
Q Consensus 18 KGss~nlGa--~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~ 60 (80)
-|..|.++. +-..+.+.+|-++.++||.+.+..+..++..-+.
T Consensus 203 ~Ga~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~ 247 (311)
T 3h5d_A 203 LGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAIQRKFIPKVN 247 (311)
T ss_dssp HTCCEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 355555543 4477889999999999999988777666655433
No 39
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=30.81 E-value=98 Score=20.41 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=29.6
Q ss_pred hhhhccC--hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043345 19 GSSSSIG--AQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEY 59 (80)
Q Consensus 19 Gss~nlG--a~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 59 (80)
|..|.++ ++-..+.+.+|-++.++||.+.+..+..++..-+
T Consensus 209 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 251 (301)
T 1xky_A 209 GAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVT 251 (301)
T ss_dssp TCCEEEESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEcCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5555444 5567889999999999999988776655555443
No 40
>3t9o_A DGC, diguanylate cyclase YDEH; putative zinc sensor, CZB domain, metal protein; 2.20A {Escherichia coli}
Probab=30.40 E-value=83 Score=18.27 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 28 RVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQ 71 (80)
Q Consensus 28 ~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~ 71 (80)
.+-+.+.++-.+..+|+.+.. .++.++.....+...|.+|-.
T Consensus 82 ~~H~~a~~ii~~~~~g~~~~a--~~~~~e~as~~~~~~ld~~k~ 123 (135)
T 3t9o_A 82 HMHNCGRELMLAIVENHWQDA--HFDAFQEGLLSFTAALTDYKI 123 (135)
T ss_dssp HHHHHHHHHHHHHHTTCCCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777876642 466666666666666665543
No 41
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Probab=30.35 E-value=1.2e+02 Score=21.14 Aligned_cols=34 Identities=3% Similarity=-0.039 Sum_probs=27.5
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 38 SFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQ 71 (80)
Q Consensus 38 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~ 71 (80)
.+++.+|...+...+.++...++.+...|+++++
T Consensus 189 ~a~~~~d~~~~~~~L~ri~~~l~~l~~~l~~m~e 222 (406)
T 2d0t_A 189 KAMQMQERDTLLKALLEIASCLEKALQVFHQIHD 222 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678889888888999999999888887776543
No 42
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=28.70 E-value=1.3e+02 Score=19.86 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=30.0
Q ss_pred hhhhccCh--HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043345 19 GSSSSIGA--QRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60 (80)
Q Consensus 19 Gss~nlGa--~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~ 60 (80)
|..|.+++ +-+.+.+.+|=+++++||.+.+..+..++..-+.
T Consensus 208 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~ 251 (303)
T 2wkj_A 208 GADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVID 251 (303)
T ss_dssp TCCEEEETTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 55555554 5578888999899999999887766665555443
No 43
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=28.50 E-value=88 Score=20.52 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=27.7
Q ss_pred hhhhccChHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043345 19 GSSSSIGAQR--VNNVCTAFRSFCEERNIEGCQQYLQHLKQEY 59 (80)
Q Consensus 19 Gss~nlGa~~--L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 59 (80)
|..|.+++.. +.+.+.+|-++.++||.+.+..+..++..-+
T Consensus 190 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 232 (293)
T 1w3i_A 190 GLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVI 232 (293)
T ss_dssp TCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5555555433 6778888888889999888766655555443
No 44
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=27.65 E-value=1.2e+02 Score=19.39 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=34.3
Q ss_pred hhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 043345 21 SSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLV 62 (80)
Q Consensus 21 s~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l 62 (80)
+..|+-..|...-.++-...+.++.+.+..+...|...+..+
T Consensus 4 ~~~~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~ 45 (383)
T 3ulq_A 4 TGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQM 45 (383)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred cccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 456888899999999999999999999999999999888664
No 45
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=27.39 E-value=98 Score=18.14 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043345 34 TAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQVCLKSLA 78 (80)
Q Consensus 34 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~ 78 (80)
..++......+..-....+..+-..|..+...|+.-+.-..+||.
T Consensus 55 er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiId 99 (119)
T 3etw_A 55 QRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554445666777777787788877777776666653
No 46
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=26.51 E-value=98 Score=18.44 Aligned_cols=20 Identities=5% Similarity=-0.076 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhcCHHH
Q 043345 28 RVNNVCTAFRSFCEERNIEG 47 (80)
Q Consensus 28 ~L~~~c~~lE~~~~~~~~~~ 47 (80)
.|..++..+++++.-.++-.
T Consensus 15 ~v~kW~~sl~Ka~dfDsWGQ 34 (128)
T 1ug7_A 15 LLQRWGASLRRGADFDSWGQ 34 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCcHHH
Confidence 47788888888886644433
No 47
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=26.36 E-value=93 Score=17.52 Aligned_cols=56 Identities=9% Similarity=0.185 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhhhc--cC-------hHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHHHH
Q 043345 9 KVGGHVHQLKGSSSS--IG-------AQRVNNVCTAFRSFCEER---NIEGCQQYLQHLKQEYYLVKN 64 (80)
Q Consensus 9 ~~~~laH~LKGss~n--lG-------a~~L~~~c~~lE~~~~~~---~~~~~~~~~~~l~~~~~~l~~ 64 (80)
.+..+++.++-.-.. +| -..|-..+..++.....+ +.+.+...+..|+..+..+..
T Consensus 22 ~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~ 89 (120)
T 2p32_A 22 GLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIIS 89 (120)
T ss_dssp HHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566666554332 22 234555666666655544 555555566666555544443
No 48
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles, ALGI structural protein; 2.10A {Sphingomonas}
Probab=25.22 E-value=1.5e+02 Score=19.54 Aligned_cols=51 Identities=6% Similarity=0.097 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043345 25 GAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQVCLK 75 (80)
Q Consensus 25 Ga~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~ 75 (80)
.+..|...+..+-.+..+++.+.+...+..-+..|+++...-+.|=.++.+
T Consensus 45 ~~~~L~~a~~af~~a~~~~~l~aAk~aw~~AR~~yer~E~~ae~fgdld~~ 95 (283)
T 3at7_A 45 NLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDAS 95 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHTHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHhHHHHHHhccchhh
Confidence 345677777777777788888888888888888888887654333244443
No 49
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=25.17 E-value=1.5e+02 Score=19.39 Aligned_cols=42 Identities=7% Similarity=0.035 Sum_probs=29.5
Q ss_pred hhhhccC--hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043345 19 GSSSSIG--AQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60 (80)
Q Consensus 19 Gss~nlG--a~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~ 60 (80)
|..|.++ ++-..+.+.+|-++.++||.+.+..+..++..-+.
T Consensus 200 G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~ 243 (293)
T 1f6k_A 200 GVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLIE 243 (293)
T ss_dssp TCSEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5555544 34578889999999999999887766665555443
No 50
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=25.07 E-value=1.2e+02 Score=18.45 Aligned_cols=58 Identities=7% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 9 KVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEER-NIEGCQQYLQHLKQEYYLVKNKLQTLFQVCL 74 (80)
Q Consensus 9 ~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~-~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~ 74 (80)
-+..++|.||..-.. +-..++...+.. ..+.....+..+......+...++.++...+
T Consensus 43 ~~~~l~Helr~pL~~--------i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~ 101 (268)
T 4ew8_A 43 FVGNVSYELRTPLTT--------IIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQ 101 (268)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHH--------HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888865433 333333333222 2334556667777766666666665555443
No 51
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=24.72 E-value=1e+02 Score=17.37 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043345 32 VCTAFRSFCEERNIEGC--QQYLQHLKQEYYLVKNKLQTLFQVCLKSLA 78 (80)
Q Consensus 32 ~c~~lE~~~~~~~~~~~--~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~ 78 (80)
.|..+..+.+.-+.+.. ..-..+..-.++.| +.|+.+|..||+...
T Consensus 23 ~~ed~~~FlkHL~~eH~LddrS~AQcrvQ~qvV-q~LE~QL~kEreRLq 70 (93)
T 4i1l_A 23 VFEEPEEFLKHCQADHLLDEKGKAQCLLQREVV-QSLEQQLELEKEKLG 70 (93)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhhcccCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34555555555443321 11123333333333 558888888888754
No 52
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=24.42 E-value=90 Score=20.79 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=27.9
Q ss_pred hhhhccChH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043345 19 GSSSSIGAQ--RVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60 (80)
Q Consensus 19 Gss~nlGa~--~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~ 60 (80)
|..|.++.. -..+.+.+|=++.++||.+.+..+..++..-+.
T Consensus 222 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~ 265 (315)
T 3na8_A 222 GAKGWCSAAPNLIPTLNGQLYQAVLDGDLEKARALFYRQLPLLD 265 (315)
T ss_dssp TCSEEEESGGGTCHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred CCCEEEechhhhCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 455544433 256778888888899999887777666655443
No 53
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.25 E-value=1.7e+02 Score=19.33 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=29.8
Q ss_pred hhhhcc--ChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043345 19 GSSSSI--GAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYY 60 (80)
Q Consensus 19 Gss~nl--Ga~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~ 60 (80)
|..|.+ -++-..+.+.++=++.++||.+.+..+..++..-+.
T Consensus 210 Ga~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~ 253 (304)
T 3l21_A 210 GATGFISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCN 253 (304)
T ss_dssp TCCEEEESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred CCCEEEecHHhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444543 355677889999999999999988777666555433
No 54
>3txs_A Terminase DNA packaging enzyme small subunit; helix, small terminase, viral protein; 1.81A {Aeromonas phage 44RR2} PDB: 3txq_A
Probab=22.55 E-value=1.1e+02 Score=17.17 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043345 5 VDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNKLQTLFQVCLKS 76 (80)
Q Consensus 5 ~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~ 76 (80)
.||..+|.-.|.. +.- -+-..-..||. +++.+.+..-+.+..|-..+..+..+|-..-.-++.|
T Consensus 24 ~DY~~~R~~lh~q-~Qm------l~daa~~aLE~-AknSdsPR~~EVf~~lm~qmt~~~~kll~LhK~MKdi 87 (94)
T 3txs_A 24 DDYELVRRNMHYQ-SQM------LLDMAKIALEN-AKNADSPRHVEVFAQLMGQMTTTNKEMLKMHKEMKDL 87 (94)
T ss_dssp HHHHHHHHHHHHH-HHH------HHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHH------HHHHHHHHHHH-HHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999931 111 11122244555 4445556667777888888888877776665555544
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.10 E-value=82 Score=15.36 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043345 48 CQQYLQHLKQEYYLVKNKLQ 67 (80)
Q Consensus 48 ~~~~~~~l~~~~~~l~~~L~ 67 (80)
+..-+.+|-.+|...+.+|.
T Consensus 17 LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 17 LQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666653
No 56
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.85 E-value=85 Score=20.71 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=27.7
Q ss_pred hhhhccChHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043345 19 GSSSSIGAQR--VNNVCTAFRSFCEERNIEGCQQYLQHLKQEY 59 (80)
Q Consensus 19 Gss~nlGa~~--L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 59 (80)
|..|.++... ..+.+.+|=++.++||.+.+..+..++..-+
T Consensus 201 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 243 (300)
T 3eb2_A 201 GGVGWMAGPACIAPRQSVALYELCKAQRWDEALMLQRKLWRVN 243 (300)
T ss_dssp TCCEEEEGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHTHHH
T ss_pred CCCEEEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4455544432 5678888888889999988777666655433
No 57
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=20.99 E-value=1e+02 Score=16.07 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHhhhhhhccChHHHHHHHHHHHHHHhh--cCHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSSSSIGAQRVNNVCTAFRSFCEE--RNIE-----GCQQYLQHLKQEYYLVKNKLQTLFQ 71 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss~nlGa~~L~~~c~~lE~~~~~--~~~~-----~~~~~~~~l~~~~~~l~~~L~~~l~ 71 (80)
..||..+...+-.+.+.+..|- .....|+..... ..+. .......+....+..+...|..+-.
T Consensus 4 ~v~~~~l~~~a~~~~~~~~~i~-----~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~ 73 (94)
T 3fav_B 4 QWNFAGIEAAASAIQGNVTSIH-----SLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLAR 73 (94)
T ss_dssp -----CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888776543 333333333221 1122 3444455555555555555554433
No 58
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=20.69 E-value=1.5e+02 Score=17.73 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHhhh--------hhhcc----------ChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKG--------SSSSI----------GAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNK 65 (80)
Q Consensus 4 ~~D~~~~~~laH~LKG--------ss~nl----------Ga~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 65 (80)
..||..++.+.|.-=| -+.++ =+..|.+...+|-.+++.+|...+. .+|..+...
T Consensus 49 ~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~-------k~Y~~a~ad 121 (133)
T 3ls0_A 49 DQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGSQAK-------IQYQEALAD 121 (133)
T ss_dssp TTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHH
T ss_pred hcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-------HHHHHHHHH
Confidence 5788888888885333 23332 1233444555566666666655443 445555555
Q ss_pred HHHHHHH
Q 043345 66 LQTLFQV 72 (80)
Q Consensus 66 L~~~l~~ 72 (80)
+..|+++
T Consensus 122 fdafl~l 128 (133)
T 3ls0_A 122 FDSFLNL 128 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 59
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=20.44 E-value=1.5e+02 Score=17.64 Aligned_cols=62 Identities=5% Similarity=0.080 Sum_probs=36.3
Q ss_pred chhHHHHHHHHHHhhhhh--------hcc----------ChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 043345 4 NVDFTKVGGHVHQLKGSS--------SSI----------GAQRVNNVCTAFRSFCEERNIEGCQQYLQHLKQEYYLVKNK 65 (80)
Q Consensus 4 ~~D~~~~~~laH~LKGss--------~nl----------Ga~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 65 (80)
..||..++.+.|.-=|.- .++ =+..|.+...+|-.+++.+|...+. .+|..+...
T Consensus 46 ~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~-------k~Y~~a~ad 118 (130)
T 3zsu_A 46 KGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTVAQ-------EGFREAEAD 118 (130)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-------HHHHHHHHH
T ss_pred hcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-------HHHHHHHHH
Confidence 578888888888644432 222 1234555566666777777755544 445555555
Q ss_pred HHHHHHH
Q 043345 66 LQTLFQV 72 (80)
Q Consensus 66 L~~~l~~ 72 (80)
+..|+++
T Consensus 119 fdafl~l 125 (130)
T 3zsu_A 119 FKAYLNS 125 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5566554
No 60
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.03 E-value=1.1e+02 Score=20.07 Aligned_cols=31 Identities=3% Similarity=-0.034 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043345 29 VNNVCTAFRSFCEERNIEGCQQYLQHLKQEY 59 (80)
Q Consensus 29 L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 59 (80)
..+.+.+|=++.++||.+.+..+..++..-+
T Consensus 209 ~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 239 (297)
T 2rfg_A 209 APALYGQMQTATLQGDFREALRIHDLLAPLH 239 (297)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5677777877888899888776655555433
Done!