BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043347
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 118/367 (32%), Positives = 173/367 (47%), Gaps = 22/367 (5%)
Query: 23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPR--LKGLYVSYNQFKGPIPNNLWHC 80
+P S+ NLS+ LD S+N+ +G ++C+ P+ L+ LY+ N F G IP L +C
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 81 KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
EL + LSFN +G IP LG+ +KL+ L L N L GEIPQE+ ++ LE L +D N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 141 LVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIG-LPNLEGLILGLNNFSGSIPSFF 199
L G IP + N K IG L NL L L N+FSG+IP+
Sbjct: 478 LTGEIPSGLSNC---TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 200 FNASKLYYLELAYNSFSGLIPKAL----GQLRNLERLGLQSNYLTSSTS----------- 244
+ L +L+L N F+G IP A+ G++ G + Y+ +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
E + S +N S + + V G S + + S+ + M + G IPKEIG+
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 305 LINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN 364
+ L P +G L+ L LDL +NK +G IP + L + L+ N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 365 KLSGSIP 371
LSG IP
Sbjct: 715 NLSGPIP 721
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 162/372 (43%), Gaps = 55/372 (14%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE--LSRVSLSFNQFT 94
LD S N +G P+ + L L +S N F GPI NL + L + L N FT
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 95 GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMXX 154
G+IP L N ++L L+LSFN L G IP +GSL L L++ N L G IP
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-------- 459
Query: 155 XXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214
++L+ + LE LIL N+ +G IPS N + L ++ L+ N
Sbjct: 460 ------------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLP 274
+G IPK +G+L NL L L +N + ++ + L +C+SL + L N +G +P
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSG------NIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 275 SSIGNLSVSVE------EIYMY--------KCNIHGRI-------PKEIGNLINLTKXXX 313
+++ S + + Y+Y +C+ G + +++ L
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 314 XXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373
T + LD+ N G IP E L+ L N +SGSIP
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 374 LGDLNSLRILSL 385
+GDL L IL L
Sbjct: 676 VGDLRGLNILDL 687
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
L + N TG PD + L GL +S N F G +P C L ++LS N F+G
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 97 IPRD-LGNSTKLKLLYLSFNNLIGEIPQEIGSLR-NLEILRIDQNNLVG-FIPDTIFNMX 153
+P D L LK+L LSFN GE+P+ + +L +L L + NN G +P+ N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 154 XXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN 213
L+ L L N F+G IP N S+L L L++N
Sbjct: 394 NT-------------------------LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 214 SFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273
SG IP +LG L L L L N L + L+ K+L+ ++L N + G +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ELMYVKTLETLILDFNDLTGEI 482
Query: 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQ 333
PS + N + ++ I + + G IPK IG L NL P LG + L
Sbjct: 483 PSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 334 GLDLQNNKFEGPIP 347
LDL N F G IP
Sbjct: 542 WLDLNTNLFNGTIP 555
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 154/353 (43%), Gaps = 16/353 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N+ + P L+ L +S N+ G + C EL +++S NQF G
Sbjct: 205 LDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMXXX 155
IP S L+ L L+ N GEIP + G+ L L + N+ G +P F
Sbjct: 263 IPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSL 319
Query: 156 XXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFN-ASKLYYLELAYNS 214
L+ + L+ L L N FSG +P N ++ L L+L+ N+
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 215 FSG-LIPKALGQLRN-LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV 272
FSG ++P +N L+ L LQ+N T +S NC L + L+ N + G
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS------NCSELVSLHLSFNYLSGT 433
Query: 273 LPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKL 332
+PSS+G+LS + ++ ++ + G IP+E+ + L P L L
Sbjct: 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
+ L NN+ G IP L L+ N SG+IP+ LGD SL L L
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 139/365 (38%), Gaps = 79/365 (21%)
Query: 83 LSRVSLSFNQFTGRIPR--DLGNSTKLKLLYLSFNNLIGEIPQEIGS---LRNLEILRID 137
L+ + LS N +G + LG+ + LK L +S N L + P ++ L +LE+L +
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 159
Query: 138 QN-----NLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFS 192
N N+VG++ + + NLE L + NNFS
Sbjct: 160 ANSISGANVVGWV------LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 193 GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA 252
IP F + S L +L+++ N SG +A+ L+ L + SN L
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP----- 267
Query: 253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXX 312
KSL+ + LAEN G +P + ++ + + + +G +P G+ L
Sbjct: 268 ---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 313 XXXXXXXXXXPI-TLGRLKKLQGLDL---------------------------------- 337
P+ TL +++ L+ LDL
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 338 -----------------QNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
QNN F G IP + S L +L+ N LSG+IPS LG L+ L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 381 RILSL 385
R L L
Sbjct: 445 RDLKL 449
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 62 LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
L +SYN G IP + L ++L N +G IP ++G+ L +L LS N L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPD 147
PQ + +L L + + NNL G IP+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 28/247 (11%)
Query: 23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
IP+ + N ++++ + SNN LTG P + L L L +S N F G IP L C+
Sbjct: 482 IPSGLSNCTNLNW-ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 83 LSRVSLSFNQFTGRIPRDL-GNSTKL--------KLLYLSFNNLIGEIPQEIGSLRNLEI 133
L + L+ N F G IP + S K+ + +Y+ + + E G+L +
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQG 598
Query: 134 LRIDQNNLV--------------GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLP 179
+R +Q N + G T N K++ +P
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN--NGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
L L LG N+ SGSIP + L L+L+ N G IP+A+ L L + L +N L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 240 TSSTSEL 246
+ E+
Sbjct: 717 SGPIPEM 723
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 33/148 (22%)
Query: 80 CKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQN 139
C SRV + G N+ + L +S+N L G IP+EIGS+ L IL + N
Sbjct: 613 CNITSRV------YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 140 NLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFF 199
++ G IPD + + L L L L N G IP
Sbjct: 667 DISGSIPDEVGD--------------------------LRGLNILDLSSNKLDGRIPQAM 700
Query: 200 FNASKLYYLELAYNSFSGLIPKALGQLR 227
+ L ++L+ N+ SG IP+ +GQ
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPE-MGQFE 727
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 118/367 (32%), Positives = 173/367 (47%), Gaps = 22/367 (5%)
Query: 23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPR--LKGLYVSYNQFKGPIPNNLWHC 80
+P S+ NLS+ LD S+N+ +G ++C+ P+ L+ LY+ N F G IP L +C
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 81 KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
EL + LSFN +G IP LG+ +KL+ L L N L GEIPQE+ ++ LE L +D N+
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 141 LVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIG-LPNLEGLILGLNNFSGSIPSFF 199
L G IP + N K IG L NL L L N+FSG+IP+
Sbjct: 475 LTGEIPSGLSNC---TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 200 FNASKLYYLELAYNSFSGLIPKAL----GQLRNLERLGLQSNYLTSSTS----------- 244
+ L +L+L N F+G IP A+ G++ G + Y+ +
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
E + S +N S + + V G S + + S+ + M + G IPKEIG+
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 305 LINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN 364
+ L P +G L+ L LDL +NK +G IP + L + L+ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 365 KLSGSIP 371
LSG IP
Sbjct: 712 NLSGPIP 718
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 162/372 (43%), Gaps = 55/372 (14%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE--LSRVSLSFNQFT 94
LD S N +G P+ + L L +S N F GPI NL + L + L N FT
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 95 GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMXX 154
G+IP L N ++L L+LSFN L G IP +GSL L L++ N L G IP
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-------- 456
Query: 155 XXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214
++L+ + LE LIL N+ +G IPS N + L ++ L+ N
Sbjct: 457 ------------------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLP 274
+G IPK +G+L NL L L +N + ++ + L +C+SL + L N +G +P
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSG------NIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 275 SSIGNLSVSVE------EIYMY--------KCNIHGRI-------PKEIGNLINLTKXXX 313
+++ S + + Y+Y +C+ G + +++ L
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 314 XXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373
T + LD+ N G IP E L+ L N +SGSIP
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 374 LGDLNSLRILSL 385
+GDL L IL L
Sbjct: 673 VGDLRGLNILDL 684
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 137/314 (43%), Gaps = 35/314 (11%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
L + N TG PD + L GL +S N F G +P C L ++LS N F+G
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 97 IPRD-LGNSTKLKLLYLSFNNLIGEIPQEIGSLR-NLEILRIDQNNLVG-FIPDTIFNMX 153
+P D L LK+L LSFN GE+P+ + +L +L L + NN G +P+ N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 154 XXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN 213
L+ L L N F+G IP N S+L L L++N
Sbjct: 391 NT-------------------------LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 214 SFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273
SG IP +LG L L L L N L + L+ K+L+ ++L N + G +
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------ELMYVKTLETLILDFNDLTGEI 479
Query: 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQ 333
PS + N + ++ I + + G IPK IG L NL P LG + L
Sbjct: 480 PSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 334 GLDLQNNKFEGPIP 347
LDL N F G IP
Sbjct: 539 WLDLNTNLFNGTIP 552
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 154/353 (43%), Gaps = 16/353 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N+ + P L+ L +S N+ G + C EL +++S NQF G
Sbjct: 202 LDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMXXX 155
IP S L+ L L+ N GEIP + G+ L L + N+ G +P F
Sbjct: 260 IPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSL 316
Query: 156 XXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFN-ASKLYYLELAYNS 214
L+ + L+ L L N FSG +P N ++ L L+L+ N+
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 215 FSG-LIPKALGQLRN-LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV 272
FSG ++P +N L+ L LQ+N T +S NC L + L+ N + G
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS------NCSELVSLHLSFNYLSGT 430
Query: 273 LPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKL 332
+PSS+G+LS + ++ ++ + G IP+E+ + L P L L
Sbjct: 431 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
+ L NN+ G IP L L+ N SG+IP+ LGD SL L L
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 139/365 (38%), Gaps = 79/365 (21%)
Query: 83 LSRVSLSFNQFTGRIPR--DLGNSTKLKLLYLSFNNLIGEIPQEIGS---LRNLEILRID 137
L+ + LS N +G + LG+ + LK L +S N L + P ++ L +LE+L +
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 156
Query: 138 QN-----NLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFS 192
N N+VG++ + + NLE L + NNFS
Sbjct: 157 ANSISGANVVGWV------LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 193 GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA 252
IP F + S L +L+++ N SG +A+ L+ L + SN L
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP----- 264
Query: 253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXX 312
KSL+ + LAEN G +P + ++ + + + +G +P G+ L
Sbjct: 265 ---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 313 XXXXXXXXXXPI-TLGRLKKLQGLDL---------------------------------- 337
P+ TL +++ L+ LDL
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Query: 338 -----------------QNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
QNN F G IP + S L +L+ N LSG+IPS LG L+ L
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 381 RILSL 385
R L L
Sbjct: 442 RDLKL 446
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 62 LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
L +SYN G IP + L ++L N +G IP ++G+ L +L LS N L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPD 147
PQ + +L L + + NNL G IP+
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 118/298 (39%), Gaps = 37/298 (12%)
Query: 23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
IP+ + N ++++ + SNN LTG P + L L L +S N F G IP L C+
Sbjct: 479 IPSGLSNCTNLNW-ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 83 LSRVSLSFNQFTGRIPRDL-GNSTKL--------KLLYLSFNNLIGEIPQEIGSLRNLEI 133
L + L+ N F G IP + S K+ + +Y+ + + E G+L +
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQG 595
Query: 134 LRIDQNNLV--------------GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLP 179
+R +Q N + G T N K++ +P
Sbjct: 596 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN--NGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
L L LG N+ SGSIP + L L+L+ N G IP+A+ L L + L +N L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR 297
+ E M F K L L P+ PS+ + Y + HGR
Sbjct: 714 SGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSN--------ADGYAHHQRSHGR 762
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 98/255 (38%), Gaps = 41/255 (16%)
Query: 121 IPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLP 179
IP + +L L L I NNLVG IP I L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--------------------------LT 101
Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
L L + N SG+IP F L L+ +YN+ SG +P ++ L NL + N +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
+ + + FS L + ++ N + G +P + NL+++ ++ +
Sbjct: 162 SGAIPDSYGSFSKL-----FTSMTISRNRLTGKIPPTFANLNLAFVDLS------RNMLE 210
Query: 300 KEIGNLINLTKXXXXXXXXXXXXPITLGRL---KKLQGLDLQNNKFEGPIPHEFCHFSRL 356
+ L K LG++ K L GLDL+NN+ G +P L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 357 YKFYLNRNKLSGSIP 371
+ ++ N L G IP
Sbjct: 271 HSLNVSFNNLCGEIP 285
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 108/271 (39%), Gaps = 37/271 (13%)
Query: 37 LDFSNNSLTGSFP-DDMCEGLPRLKGLYVS-YNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
LD S +L +P LP L LY+ N GPIP + +L + ++ +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 95 GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMXX 154
G IP L L L S+N L G +P I SL NL + D N + G IPD+ +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-- 172
Query: 155 XXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214
KL + + N +G IP F N + L +++L+ N
Sbjct: 173 ------------------SKL-----FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLP 274
G G +N +++ L N L ++ K+L + L N + G LP
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-------SKNLNGLDLRNNRIYGTLP 261
Query: 275 SSIGNLSVSVEEIYMYKCNIHGRIPKEIGNL 305
+ L + + + N+ G IP+ GNL
Sbjct: 262 QGLTQLKF-LHSLNVSFNNLCGEIPQG-GNL 290
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 26/235 (11%)
Query: 23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
IP+S+ NL ++ N+L G P + + L +L LY+++ G IP+ L K
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNL-EILRIDQNNL 141
L + S+N +G +P + + L + N + G IP GS L + I +N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 142 VGFIPDTIFNMXXXXXXXXXXXXXXXXXX------XXKKL-------------IGLP-NL 181
G IP T N+ +K+ +GL NL
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
GL L N G++P L+ L +++N+ G IP+ NL+R + +
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSA 297
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLK 330
G +P +I L+ + +Y+ N+ G IP + + L P ++ L
Sbjct: 91 GPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 331 KLQGLDLQNNKFEGPIPHEFCHFSRLY-KFYLNRNKLSGSIPSCLGDLN 378
L G+ N+ G IP + FS+L+ ++RN+L+G IP +LN
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 273 LPSSIGNLSVSVEEIYMYKCN-IHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKK 331
+PSS+ NL + +Y+ N + G IP I L L P L ++K
Sbjct: 68 IPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 332 LQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
L LD N G +P L + N++SG+IP G + L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 48/217 (22%)
Query: 73 IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNL 131
IP+N+ + ++ L N+ + + TKL+LLYL+ N L +P I L+NL
Sbjct: 31 IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNL 87
Query: 132 EILRIDQNNLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNF 191
E L + N L +P +F+ L NL L L N
Sbjct: 88 ETLWVTDNKLQA-LPIGVFDQ-------------------------LVNLAELRLDRNQL 121
Query: 192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT-------SSTS 244
P F + +KL YL L YN L +L +L+ L L +N L +
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 245 ELMSLF-----------SALVNCKSLKVIVLAENPVD 270
EL +L A + + LK++ L ENP D
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 23 IPASIFN-LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81
+PA IF L ++ T L ++N L + P + + L L L + NQ K P
Sbjct: 76 LPAGIFKELKNLET-LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 82 ELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLIGEIPQ-EIGSLRNLEILRIDQN 139
+L+ +SL +N+ +P+ + + T LK L L +NN + +P+ L L+ L++D N
Sbjct: 134 KLTYLSLGYNELQS-LPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLD-N 190
Query: 140 NLVGFIPDTIFN 151
N + +P+ F+
Sbjct: 191 NQLKRVPEGAFD 202
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 9/192 (4%)
Query: 194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL 253
+IPS +K L+L N S L KA +L L L L N L + + +F L
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA---GIFKEL 84
Query: 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXX 313
K+L+ + + +N + LP + + V++ E+ + + + P+ +L LT
Sbjct: 85 ---KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 314 XXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373
+L L+ L L NN+ + F + L L+ N+L
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 374 LGDLNSLRILSL 385
L L++L L
Sbjct: 201 FDSLEKLKMLQL 212
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 10/199 (5%)
Query: 176 IGLPNLEGLILGLN--NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLG 233
+ LP+LE L L N +F G F + L YL+L++N + LG L LE L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLD 402
Query: 234 LQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCN 293
Q + L MS FS ++ ++L + ++ LS S+E + M +
Sbjct: 403 FQHSNLKQ-----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNS 456
Query: 294 IHGR-IPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352
+P L NLT P L LQ L++ +N+ + F
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Query: 353 FSRLYKFYLNRNKLSGSIP 371
+ L K +L+ N S P
Sbjct: 517 LTSLQKIWLHTNPWDCSCP 535
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 190 NFSGSIPSFFF-NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS 248
NF GSI S F N KL L+L+YN L ++ L NL+ L L +N L S
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD---G 389
Query: 249 LFSALVNCKSLKVIVLAENPVDGVLP 274
+F L SL+ I L NP D P
Sbjct: 390 IFDRLT---SLQKIWLHTNPWDCSCP 412
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 59 LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP-RDLGNSTKLKLLYLSFNNL 117
L+ L ++ N+ N W L +++LS N F G I R N KL++L LS+N++
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 118 IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFN 151
Q L NL+ L +D N L +PD IF+
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKS-VPDGIFD 392
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
GL++ N F G S L L+L YN F L A L NLE L L L +
Sbjct: 67 GLVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118
Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS 276
+ F L SL+++VL +N + + P+S
Sbjct: 119 VLS-GNFFKPLT---SLEMLVLRDNNIKKIQPAS 148
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 73 IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLE 132
+P + + L + LS N+ T +P +LG+ +LK Y F+N++ +P E G+L NL+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQ 319
Query: 133 ILRIDQNNL 141
L ++ N L
Sbjct: 320 FLGVEGNPL 328
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 58 RLKGLYVSYNQFKG-PIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN 116
+++ +Y+ YN K P+ +L K+L + +NQ G++P G+ KL L L++N
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQ 364
Query: 117 LIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNM 152
I EIP G +E L N L +IP+ IF+
Sbjct: 365 -ITEIPANFCGFTEQVENLSFAHNKL-KYIPN-IFDA 398
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 21/197 (10%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGL 234
L L NL GL L N + P N + L LEL+ N+ S + AL L +L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF 158
Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
SN +T L N +L+ + ++ N V + S + L+ ++E + I
Sbjct: 159 SSNQVTD--------LKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQI 207
Query: 295 HGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS 354
P +G L NL + TL L L LDL NN+ P +
Sbjct: 208 SDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 355 RLYKFYLNRNKLSGSIP 371
+L + L N++S P
Sbjct: 262 KLTELKLGANQISNISP 278
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 21/197 (10%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGL 234
L L NL GL L N + P N + L LEL+ N+ S + AL L +L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNF 158
Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
SN +T L N +L+ + ++ N V + S + L+ ++E + I
Sbjct: 159 SSNQVTD--------LKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQI 207
Query: 295 HGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS 354
P +G L NL + TL L L LDL NN+ P +
Sbjct: 208 SDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 355 RLYKFYLNRNKLSGSIP 371
+L + L N++S P
Sbjct: 262 KLTELKLGANQISNISP 278
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 21/197 (10%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGL 234
L L NL GL L N + P N + L LEL+ N+ S + AL L +L++L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF 158
Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
SN +T L N +L+ + ++ N V + S + L+ ++E + I
Sbjct: 159 SSNQVTD--------LKPLANLTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQI 207
Query: 295 HGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS 354
P +G L NL + TL L L LDL NN+ P +
Sbjct: 208 SDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 355 RLYKFYLNRNKLSGSIP 371
+L + L N++S P
Sbjct: 262 KLTELKLGANQISNISP 278
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 10/170 (5%)
Query: 176 IGLPNLEGLILGLN--NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLG 233
+ LP+LE L L N +F G F + L YL+L++N + LG L LE L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLD 402
Query: 234 LQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCN 293
Q + L MS FS ++ ++L + ++ LS S+E + M +
Sbjct: 403 FQHSNLKQ-----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNS 456
Query: 294 IHGR-IPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKF 342
+P L NLT P L LQ L++ +N F
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 26/195 (13%)
Query: 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
+P L L+L N+ S F N KL L ++ N+ + +L+ L L S
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174
Query: 237 NYLTSSTSELM-SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYK--CN 293
N LT L+ SLF A V+ L + +P ++ L S I + + N
Sbjct: 175 NRLTHVDLSLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVRGPVN 225
Query: 294 IHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF 353
+ I K N NLT L L +DL N+ E + H F
Sbjct: 226 VELTILKLQHN--NLTDTAW------------LLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 354 SRLYKFYLNRNKLSG 368
RL + Y++ N+L
Sbjct: 272 QRLERLYISNNRLVA 286
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 13/194 (6%)
Query: 59 LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNL 117
++ LY+ +N + P+ + L+ + L N + +PR + N+ KL L +S NNL
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL 153
Query: 118 I---GEIPQEIGSLRNLEIL--RIDQNNLVGFIP-----DTIFNMXXXXXXXXXXXXXXX 167
+ Q SL+NL++ R+ +L IP + +N+
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDA 212
Query: 168 XXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLR 227
+ G N+E IL L + + + ++ N L ++L+YN ++ +++
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272
Query: 228 NLERLGLQSNYLTS 241
LERL + +N L +
Sbjct: 273 RLERLYISNNRLVA 286
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP-------------- 220
L L NL GL L N + P N + L LEL+ N+ S +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 221 -----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275
K L L LERL + SN ++ +S+ + L N +SL + N + + P
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESL---IATNNQISDITP- 211
Query: 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGL 335
+G L+ + + +++G K+IG TL L L L
Sbjct: 212 -LGILT------NLDELSLNGNQLKDIG---------------------TLASLTNLTDL 243
Query: 336 DLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371
DL NN+ P ++L + L N++S P
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP-------------- 220
L L NL GL L N + P N + L LEL+ N+ S +
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 164
Query: 221 -----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275
K L L LERL + SN ++ +S+ + L N +SL + N + + P
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESL---IATNNQISDITP- 215
Query: 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGL 335
+G L+ + + +++G K+IG TL L L L
Sbjct: 216 -LGILT------NLDELSLNGNQLKDIG---------------------TLASLTNLTDL 247
Query: 336 DLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371
DL NN+ P ++L + L N++S P
Sbjct: 248 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP-------------- 220
L L NL GL L N + P N + L LEL+ N+ S +
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165
Query: 221 -----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275
K L L LERL + SN ++ +S+ + L N +SL + N + + P
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESL---IATNNQISDITP- 216
Query: 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGL 335
+G L+ + + +++G K+IG TL L L L
Sbjct: 217 -LGILT------NLDELSLNGNQLKDIG---------------------TLASLTNLTDL 248
Query: 336 DLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371
DL NN+ P ++L + L N++S P
Sbjct: 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 82/216 (37%), Gaps = 60/216 (27%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP-------------- 220
L L NL GL L N + P N + L LEL+ N+ S +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 221 -----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275
K L L LERL + SN ++ +S+ + L N +SL + N + + P
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESL---IATNNQISDITP- 211
Query: 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGL 335
+G L+ + + +++G K+IG TL L L L
Sbjct: 212 -LGILT------NLDELSLNGNQLKDIG---------------------TLASLTNLTDL 243
Query: 336 DLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371
DL NN+ P ++L + L N++S P
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 178 LPNLEGLILGLNNFSGSIPSFFFNA-SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
L NL+ L+L N S+P F+ + L YL LA+N L +L NL L L
Sbjct: 108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMY 290
N L S +F L K L+ L +N + V P + + S++ I+++
Sbjct: 167 NQLQSLPE---GVFDKLTQLKDLR---LYQNQLKSV-PDGVFDRLTSLQYIWLH 213
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 47 SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWH-CKELSRVSLSFNQFTGRIPRDLGNS- 104
S P+ + + L LK L + NQ + +P+ ++ L+ ++L+ NQ +P+ + +
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKL 156
Query: 105 TKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFN 151
T L L LS+N L +P+ + L L+ LR+ QN L +PD +F+
Sbjct: 157 TNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFD 202
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 39 FSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP 98
+N+L + PDD L L L++ N+ L R+ L N+ P
Sbjct: 135 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 99 ---RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
RDLG +L LYL NNL + + LR L+ LR++ N V
Sbjct: 194 HAFRDLG---RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 237
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 73/211 (34%), Gaps = 7/211 (3%)
Query: 176 IGLPNLEGLILGLNNFSGSIPSFFFNASK-LYYLELAYNSFSGLIPKALGQLRNLERLGL 234
+G+P I N +P+ F A + L L L N + + A L LE+L L
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
N S + F L L + L + + P L+ +++ +Y+ +
Sbjct: 87 SDNAQLRSVDP--ATFHGL---GRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNAL 140
Query: 295 HGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS 354
+L NLT L L L L N+ PH F
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 355 RLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
RL YL N LS L L +L+ L L
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRL 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 39 FSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP 98
+N+L + PDD L L L++ N+ L R+ L N+ P
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 99 ---RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
RDLG +L LYL NNL + + LR L+ LR++ N V
Sbjct: 195 HAFRDLG---RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 73/211 (34%), Gaps = 7/211 (3%)
Query: 176 IGLPNLEGLILGLNNFSGSIPSFFFNASK-LYYLELAYNSFSGLIPKALGQLRNLERLGL 234
+G+P I N +P+ F A + L L L N + + A L LE+L L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
N S + F L L + L + + P L+ +++ +Y+ +
Sbjct: 88 SDNAQLRSVDP--ATFHGL---GRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNAL 141
Query: 295 HGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS 354
+L NLT L L L L N+ PH F
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 355 RLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
RL YL N LS L L +L+ L L
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRL 232
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 54 EGLPRLKGLYVSYNQFKGPIPNNLWHC-KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYL 112
+ L LK LY+ NQ G +P ++ +L+ + L NQ T LK L++
Sbjct: 61 DSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119
Query: 113 SFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFN 151
N L E+P+ I L +L L +DQN L IP F+
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFD 156
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 26/193 (13%)
Query: 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
+P L L+L N+ S F N KL L ++ N+ + +L+ L L S
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 237 NYLTSSTSELM-SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYK--CN 293
N LT L+ SLF A V+ L + +P ++ L S I + + N
Sbjct: 181 NRLTHVDLSLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVRGPVN 231
Query: 294 IHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF 353
+ I K N NLT L L +DL N+ E + H F
Sbjct: 232 VELTILKLQHN--NLTDTAW------------LLNYPGLVEVDLSYNELEKIMYHPFVKM 277
Query: 354 SRLYKFYLNRNKL 366
RL + Y++ N+L
Sbjct: 278 QRLERLYISNNRL 290
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 13/194 (6%)
Query: 59 LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNL 117
++ LY+ +N + P+ + L+ + L N + +PR + N+ KL L +S NNL
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL 159
Query: 118 I---GEIPQEIGSLRNLEIL--RIDQNNLVGFIP-----DTIFNMXXXXXXXXXXXXXXX 167
+ Q SL+NL++ R+ +L IP + +N+
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDA 218
Query: 168 XXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLR 227
+ G N+E IL L + + + ++ N L ++L+YN ++ +++
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278
Query: 228 NLERLGLQSNYLTS 241
LERL + +N L +
Sbjct: 279 RLERLYISNNRLVA 292
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 34/170 (20%)
Query: 207 YLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE 266
YL L N + AL +L NL L L N L S + +F L N LK +VL E
Sbjct: 67 YLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPN---GVFDKLTN---LKELVLVE 118
Query: 267 NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITL 326
N + LP + + ++ +Y+Y + +PK +
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLYLYHNQLQS-LPKGV-----------------------F 153
Query: 327 GRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGD 376
+L L LDL NN+ + F ++L + LN N+L S+P + D
Sbjct: 154 DKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFD 202
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
L NL+ L+L N F + L YL L +N L +L NL RL L +N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 238 YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
L S +F L K L L +N + V P + + S+ I++
Sbjct: 168 QLQSLPE---GVFDKLTQLKQLS---LNDNQLKSV-PDGVFDRLTSLTHIWL 212
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 86 VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFI 145
++LS N TG + R L K+K+L L NN I IP+++ L+ L+ L + N L +
Sbjct: 433 LNLSSNMLTGSVFRCLP--PKVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLKS-V 488
Query: 146 PDTIFN 151
PD +F+
Sbjct: 489 PDGVFD 494
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 51 DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLL 110
D+ EGL L+ LY+++N P H L +SL+ N+ T DL L++L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEIL 531
Query: 111 YLSFNNLIGEIPQEIGSLRNLEI 133
+S N L+ P SL L+I
Sbjct: 532 DISRNQLLAPNPDVFVSLSVLDI 554
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 173 KKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERL 232
+ GL NL+ L L N S F+ K+ Y++L N + + + L L+ L
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 233 GLQSNYLTS 241
L+ N LT+
Sbjct: 368 DLRDNALTT 376
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 28/132 (21%)
Query: 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXX 313
C L +V N VLP I V E+Y+ N +PKE+ N
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGIPR---DVTELYLDG-NQFTLVPKELSNY-------- 53
Query: 314 XXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373
K L +DL NN+ F + ++L L+ N+L P
Sbjct: 54 ----------------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
Query: 374 LGDLNSLRILSL 385
L SLR+LSL
Sbjct: 98 FDGLKSLRLLSL 109
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NN + E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NN + E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NN + E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ NQ T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NN + E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NNL E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ N T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 31/252 (12%)
Query: 54 EGLPRLKGLYVSYNQFKGPIPNNLW--HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLY 111
E L L+ L +S++ + NL + + L ++LS+N+ G + +L+LL
Sbjct: 346 EKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLD 405
Query: 112 LSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDT--------IFNMXXXXXXXXXXX 163
++F +L + P +NL +LR+ NL + DT + ++
Sbjct: 406 VAFTHLHVKAPH--SPFQNLHLLRVL--NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Query: 164 XXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL 223
+++G +LE LIL N F + +L+L++NS +G AL
Sbjct: 462 DGSISKTNLLQMVG--SLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDAL 519
Query: 224 GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVS 283
L+ L L + SN + L+ S +I L+ NP+D +
Sbjct: 520 SHLKGL-YLNMASNNIRIIPPHLLPALS------QQSIINLSHNPLDCTCS--------N 564
Query: 284 VEEIYMYKCNIH 295
+ I YK N+H
Sbjct: 565 IHFITWYKENLH 576
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 83 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NNL E+P + L NL+ L + +N+L IP F
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 193
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ N T
Sbjct: 104 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NNL E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ N T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NNL E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ N T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NNL E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ N T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 27/147 (18%)
Query: 177 GLPNLEGLI-LGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ 235
G+P L+ LG N F + L LEL N S + P A L NL LGL+
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 236 SNYLT-------SSTSELMSL--------------FSALVNCKSLKVIVLAENPVDGVLP 274
SN L + S L L F L N KSL+V +N + +
Sbjct: 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV---GDNDLVYISH 145
Query: 275 SSIGNLSVSVEEIYMYKCNIHGRIPKE 301
+ L+ S+E++ + KCN+ IP E
Sbjct: 146 RAFSGLN-SLEQLTLEKCNLTS-IPTE 170
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 50 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS 104
D +CE LPRL+ Y S PN++ C V++ + +GR+ + + S
Sbjct: 386 DHLCELLPRLQARYYSIASSSKVHPNSVHICA----VAVEYEAKSGRVNKGVATS 436
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 50 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS 104
D +CE LPRL+ Y S PN++ C V++ + +GR+ + + S
Sbjct: 386 DHLCELLPRLQARYYSIASSSKVHPNSVHICA----VAVEYEAKSGRVNKGVATS 436
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 50 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS 104
D +CE LPRL+ Y S PN++ C V++ + +GR+ + + S
Sbjct: 382 DHLCELLPRLQARYYSIASSSKVHPNSVHICA----VAVEYEAKSGRVNKGVATS 432
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 50 DDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS 104
D +CE LPRL+ Y S PN++ C V++ + +GR+ + + S
Sbjct: 379 DHLCELLPRLQARYYSIASSSKVHPNSVHICA----VAVEYEAKSGRVNKGVATS 429
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNN 140
+L+++SLS NQ TKL +LYL N L +P + L L+ L +D N
Sbjct: 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQ 111
Query: 141 LVGFIPDTIFN 151
L +PD IF+
Sbjct: 112 LKS-VPDGIFD 121
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 8/154 (5%)
Query: 190 NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL 249
+F G F + L YL+L++N + LG L LE L Q + L + MS
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNL-----KQMSE 118
Query: 250 FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR-IPKEIGNLINL 308
FS ++ ++L + ++ LS S+E + M + +P L NL
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 309 TKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKF 342
T P L LQ L++ +N F
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
LD S+N L S P + + LP L L VS+N+ L EL + L N+
Sbjct: 82 LDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF 150
P L + KL+ L L+ NN + E+P + L NL+ L + +N+L IP F
Sbjct: 140 PPGLLTPTPKLEKLSLA-NNDLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
T LD S N LT S P GL L+ LY+ N+ K P L +L ++SL+ N T
Sbjct: 103 TVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGL 234
L NL+ LIL + + F++ L +L+L+ N S L G L +L+ L L
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKV 261
N T + SLF L N ++L++
Sbjct: 106 MGN--PYQTLGVTSLFPNLTNLQTLRI 130
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 91/240 (37%), Gaps = 40/240 (16%)
Query: 128 LRNLEILRIDQNNLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILG 187
LR+LEIL++ +N LV I FN GLP+L L L
Sbjct: 58 LRHLEILQLSKN-LVRKIEVGAFN-------------------------GLPSLNTLELF 91
Query: 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELM 247
N + F SKL L L N + A ++ +L RL L SE
Sbjct: 92 DNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE-- 149
Query: 248 SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS--VSVEEIYMYKCNIHGRIPKEIGNL 305
+ F LVN + L + + N D I NL+ V +EE+ + + P L
Sbjct: 150 AAFEGLVNLRYLNLGMC--NLKD------IPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 306 INLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRN 364
+L K LK L+ L+L +N +PH+ F RL + +LN N
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 91/240 (37%), Gaps = 40/240 (16%)
Query: 128 LRNLEILRIDQNNLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILG 187
LR+LEIL++ +N LV I FN GLP+L L L
Sbjct: 58 LRHLEILQLSKN-LVRKIEVGAFN-------------------------GLPSLNTLELF 91
Query: 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELM 247
N + F SKL L L N + A ++ +L RL L SE
Sbjct: 92 DNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE-- 149
Query: 248 SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS--VSVEEIYMYKCNIHGRIPKEIGNL 305
+ F LVN + L + + N D I NL+ V +EE+ + + P L
Sbjct: 150 AAFEGLVNLRYLNLGMC--NLKD------IPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 306 INLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRN 364
+L K LK L+ L+L +N +PH+ F RL + +LN N
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
GL++ N F G S L L+L YN F L A L NLE L L L +
Sbjct: 67 GLVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118
Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS 276
+ F L SL+++VL +N + + P+S
Sbjct: 119 VLS-GNFFKPLT---SLEMLVLRDNNIKKIQPAS 148
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGL 234
L NL+ LIL + + F++ L +L+L+ N S L G L +L+ L L
Sbjct: 72 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 131
Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKV 261
N T + SLF L N ++L++
Sbjct: 132 MGN--PYQTLGVTSLFPNLTNLQTLRI 156
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
NL L L NN F L YL L YN+ L P++ L NL L L+ +
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFT 308
Query: 240 TSSTS 244
S S
Sbjct: 309 KQSVS 313
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 83/227 (36%), Gaps = 52/227 (22%)
Query: 179 PNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
P+ L L N+ S F LY L L N S + KA LR L++L + N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 239 LT-------SSTSELM-----------SLFSALVNCKSLKVIVLAENPVD--GVLPSSIG 278
L SS EL +FS L N + I + NP++ G P +
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN---MNCIEMGGNPLENSGFEPGAFD 170
Query: 279 NLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQ 338
L ++ I K IPK++ P TL L L
Sbjct: 171 GLKLNYLRISEAKLT---GIPKDL--------------------PETLNELH------LD 201
Query: 339 NNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
+NK + + +S+LY+ L N++ L L +LR L L
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 8/168 (4%)
Query: 177 GLP-NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ 235
G+P + E L L + + F +KL +L L YN L L L LGL
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 236 SNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295
+N L S + +F L L + L N + LPS + + ++E+ + +
Sbjct: 92 NNQLASLP---LGVFDHLTQ---LDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144
Query: 296 GRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFE 343
L NL RL KLQ + L N+F+
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 47 SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP---RDLGN 103
+ PD+ L L L++ N+ + L R+ L N P RDLG
Sbjct: 142 ALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG- 200
Query: 104 STKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLV 142
+L LYL NNL +P E+ LR+L+ LR++ N V
Sbjct: 201 --RLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDNPWV 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,436,077
Number of Sequences: 62578
Number of extensions: 358949
Number of successful extensions: 914
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 219
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)