Query 043347
Match_columns 385
No_of_seqs 180 out of 2659
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 04:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8E-41 1.7E-45 335.1 23.0 368 3-383 89-457 (968)
2 PLN00113 leucine-rich repeat r 100.0 3E-40 6.4E-45 331.0 23.2 371 3-385 184-578 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.6E-37 3.5E-42 270.1 5.1 362 10-384 81-445 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.2E-36 6.9E-41 262.1 5.1 351 2-365 97-450 (873)
5 KOG0444 Cytoskeletal regulator 100.0 5.9E-32 1.3E-36 237.9 -4.8 343 6-367 6-375 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 2E-31 4.4E-36 234.6 -4.6 321 3-343 51-375 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.2E-30 2.6E-35 217.9 -11.3 223 4-239 65-309 (565)
8 PLN03210 Resistant to P. syrin 99.9 4E-24 8.7E-29 215.4 24.6 339 2-365 553-904 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 2.2E-28 4.8E-33 204.4 -5.0 344 7-367 137-541 (565)
10 PLN03210 Resistant to P. syrin 99.9 3.4E-23 7.3E-28 208.8 25.2 342 24-384 551-899 (1153)
11 KOG0618 Serine/threonine phosp 99.9 3.4E-26 7.5E-31 209.7 -6.5 361 6-384 44-482 (1081)
12 KOG0618 Serine/threonine phosp 99.9 2.1E-24 4.5E-29 198.2 -4.8 241 128-383 240-505 (1081)
13 KOG4237 Extracellular matrix p 99.8 1.1E-22 2.4E-27 170.2 -1.4 350 18-383 57-493 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 1.4E-18 3.1E-23 163.9 16.8 260 60-372 204-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 7E-18 1.5E-22 159.3 17.3 261 36-350 205-465 (788)
16 KOG4237 Extracellular matrix p 99.8 1.7E-20 3.7E-25 157.2 -3.8 282 82-383 68-351 (498)
17 cd00116 LRR_RI Leucine-rich re 99.7 3.8E-19 8.2E-24 156.8 -2.2 81 62-142 3-94 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 8.3E-19 1.8E-23 154.6 -0.9 259 85-368 2-292 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 6.2E-16 1.3E-20 147.1 11.8 245 9-319 180-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 1.1E-15 2.4E-20 145.4 13.1 246 82-367 179-428 (754)
21 KOG0617 Ras suppressor protein 99.6 2.2E-18 4.7E-23 128.4 -6.0 155 5-166 31-186 (264)
22 KOG0617 Ras suppressor protein 99.5 3.8E-16 8.3E-21 116.5 -4.6 155 55-216 31-186 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.3 1E-12 2.2E-17 127.4 4.2 327 37-372 528-865 (889)
24 KOG1909 Ran GTPase-activating 99.3 8.3E-14 1.8E-18 115.7 -4.3 237 29-269 28-310 (382)
25 KOG1909 Ran GTPase-activating 99.3 3.3E-13 7.1E-18 112.2 -1.0 250 77-342 26-310 (382)
26 KOG4658 Apoptotic ATPase [Sign 99.2 1.3E-11 2.9E-16 119.7 5.3 316 6-340 522-856 (889)
27 KOG3207 Beta-tubulin folding c 99.2 3.4E-12 7.4E-17 109.3 0.3 188 175-368 117-315 (505)
28 KOG3207 Beta-tubulin folding c 99.1 3.2E-12 7E-17 109.4 -1.5 212 150-368 118-340 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 91.2 4.7 126 225-361 17-147 (175)
30 KOG1259 Nischarin, modulator o 99.0 7.5E-11 1.6E-15 96.6 0.9 133 126-271 281-413 (490)
31 PF14580 LRR_9: Leucine-rich r 99.0 9E-10 2E-14 85.9 5.7 127 130-265 20-148 (175)
32 KOG0532 Leucine-rich repeat (L 99.0 3.1E-11 6.7E-16 106.9 -3.6 212 12-237 55-270 (722)
33 KOG1259 Nischarin, modulator o 98.9 5.5E-10 1.2E-14 91.6 2.0 224 103-344 180-413 (490)
34 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.3E-14 70.3 2.6 61 306-366 1-61 (61)
35 COG4886 Leucine-rich repeat (L 98.9 3E-09 6.5E-14 96.6 6.4 176 81-272 116-292 (394)
36 PLN03150 hypothetical protein; 98.9 6.5E-09 1.4E-13 99.0 8.6 91 284-374 420-510 (623)
37 COG4886 Leucine-rich repeat (L 98.9 3.2E-09 7E-14 96.4 6.2 194 37-242 98-292 (394)
38 PLN03150 hypothetical protein; 98.9 4.6E-09 1E-13 100.0 7.4 113 258-371 419-532 (623)
39 KOG0532 Leucine-rich repeat (L 98.9 8.7E-11 1.9E-15 104.1 -4.3 175 177-367 73-247 (722)
40 PF13855 LRR_8: Leucine rich r 98.8 8.2E-09 1.8E-13 66.1 4.3 54 37-91 6-59 (61)
41 KOG2120 SCF ubiquitin ligase, 98.8 1.5E-10 3.3E-15 94.6 -5.4 179 180-365 186-374 (419)
42 KOG2120 SCF ubiquitin ligase, 98.7 1.7E-10 3.7E-15 94.3 -6.8 160 105-269 185-350 (419)
43 KOG2982 Uncharacterized conser 98.7 5.3E-09 1.1E-13 85.8 0.5 183 82-271 46-238 (418)
44 KOG2982 Uncharacterized conser 98.6 3.3E-09 7.2E-14 86.9 -1.1 237 24-263 38-285 (418)
45 KOG4341 F-box protein containi 98.6 4E-10 8.6E-15 96.3 -7.6 85 106-190 139-227 (483)
46 KOG0531 Protein phosphatase 1, 98.5 6.6E-09 1.4E-13 94.5 -2.0 242 79-343 70-318 (414)
47 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.6E-13 92.9 -0.6 196 30-241 71-269 (414)
48 COG5238 RNA1 Ran GTPase-activa 98.5 1.3E-08 2.9E-13 82.4 -1.9 140 202-343 156-316 (388)
49 KOG4341 F-box protein containi 98.4 6.5E-09 1.4E-13 89.1 -6.3 280 82-365 139-437 (483)
50 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.7E-12 68.7 -1.9 135 228-370 28-162 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.3E-06 2.8E-11 71.2 3.4 141 225-367 155-316 (388)
52 KOG1859 Leucine-rich repeat pr 98.1 4.4E-08 9.6E-13 89.9 -6.5 178 175-367 105-292 (1096)
53 KOG1859 Leucine-rich repeat pr 98.1 1.1E-07 2.4E-12 87.4 -5.5 128 130-270 165-292 (1096)
54 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 48.4 3.3 37 330-367 1-37 (44)
55 PF13306 LRR_5: Leucine rich r 98.0 3.2E-05 6.9E-10 58.1 7.0 82 3-89 8-89 (129)
56 KOG3665 ZYG-1-like serine/thre 98.0 2.8E-06 6.1E-11 81.1 1.4 153 203-363 122-284 (699)
57 KOG3665 ZYG-1-like serine/thre 97.9 1.6E-06 3.4E-11 82.8 -0.7 78 36-115 152-230 (699)
58 PRK15386 type III secretion pr 97.9 7.9E-05 1.7E-09 65.9 9.5 138 150-316 49-187 (426)
59 PF13306 LRR_5: Leucine rich r 97.8 6.2E-05 1.3E-09 56.5 6.9 109 48-161 3-111 (129)
60 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 46.2 2.8 37 306-343 1-37 (44)
61 KOG1644 U2-associated snRNP A' 97.8 3.2E-05 7E-10 60.4 4.8 82 282-363 64-149 (233)
62 KOG4579 Leucine-rich repeat (L 97.8 6.2E-07 1.4E-11 65.2 -4.8 81 58-140 54-134 (177)
63 KOG1644 U2-associated snRNP A' 97.8 6.9E-05 1.5E-09 58.6 5.9 59 82-142 43-101 (233)
64 PRK15386 type III secretion pr 97.6 0.00017 3.8E-09 63.8 7.1 120 223-364 48-187 (426)
65 KOG1947 Leucine rich repeat pr 97.5 1.2E-05 2.6E-10 75.3 -1.4 225 127-366 186-439 (482)
66 KOG1947 Leucine rich repeat pr 97.3 2.5E-05 5.4E-10 73.1 -2.8 42 325-366 357-413 (482)
67 KOG2739 Leucine-rich acidic nu 97.2 9.6E-05 2.1E-09 60.3 0.4 66 302-367 61-129 (260)
68 KOG2123 Uncharacterized conser 97.2 1.1E-05 2.3E-10 66.2 -5.1 101 29-135 17-123 (388)
69 KOG2123 Uncharacterized conser 97.0 3E-05 6.6E-10 63.6 -4.3 58 203-270 19-76 (388)
70 KOG3864 Uncharacterized conser 96.8 0.00013 2.7E-09 57.2 -2.0 83 283-365 102-187 (221)
71 KOG2739 Leucine-rich acidic nu 96.6 0.00073 1.6E-08 55.3 0.9 61 56-118 42-104 (260)
72 PF00560 LRR_1: Leucine Rich R 96.2 0.0027 5.8E-08 30.7 1.3 22 355-377 1-22 (22)
73 KOG3864 Uncharacterized conser 95.4 0.0025 5.3E-08 50.2 -1.3 84 258-342 102-188 (221)
74 PF00560 LRR_1: Leucine Rich R 94.2 0.024 5.3E-07 27.3 1.0 18 9-27 2-19 (22)
75 PF13504 LRR_7: Leucine rich r 93.9 0.041 8.9E-07 24.6 1.3 14 354-367 1-14 (17)
76 KOG4308 LRR-containing protein 93.0 0.00048 1E-08 63.3 -11.4 114 155-270 89-217 (478)
77 PF13516 LRR_6: Leucine Rich r 92.3 0.031 6.8E-07 27.6 -0.4 13 355-367 3-15 (24)
78 KOG4308 LRR-containing protein 91.2 0.0015 3.3E-08 60.1 -10.3 187 181-369 89-305 (478)
79 smart00370 LRR Leucine-rich re 87.8 0.39 8.5E-06 24.0 1.5 14 354-367 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 87.8 0.39 8.5E-06 24.0 1.5 14 354-367 2-15 (26)
81 KOG0473 Leucine-rich repeat pr 83.4 0.019 4.1E-07 46.4 -7.0 85 55-142 40-124 (326)
82 smart00368 LRR_RI Leucine rich 81.3 0.84 1.8E-05 23.4 0.9 18 330-347 2-19 (28)
83 smart00367 LRR_CC Leucine-rich 81.3 0.83 1.8E-05 22.9 0.9 11 330-340 2-12 (26)
84 KOG4242 Predicted myosin-I-bin 80.4 4.2 9.1E-05 37.0 5.4 131 7-141 165-311 (553)
85 KOG0473 Leucine-rich repeat pr 77.4 0.12 2.7E-06 41.9 -4.3 84 30-118 41-124 (326)
86 KOG4242 Predicted myosin-I-bin 70.1 11 0.00023 34.6 5.3 22 104-125 164-185 (553)
87 smart00365 LRR_SD22 Leucine-ri 68.5 4.6 0.0001 20.3 1.6 14 354-367 2-15 (26)
88 KOG3763 mRNA export factor TAP 65.0 3 6.6E-05 38.7 1.0 63 282-344 218-284 (585)
89 smart00364 LRR_BAC Leucine-ric 63.3 5.5 0.00012 20.0 1.3 13 307-319 3-15 (26)
90 KOG3763 mRNA export factor TAP 58.8 4.5 9.8E-05 37.6 1.0 38 226-267 217-254 (585)
91 TIGR00864 PCC polycystin catio 26.9 44 0.00095 38.2 2.3 31 38-69 1-31 (2740)
92 PF05725 FNIP: FNIP Repeat; I 23.3 1.4E+02 0.0031 17.0 3.1 7 283-289 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8e-41 Score=335.13 Aligned_cols=368 Identities=38% Similarity=0.567 Sum_probs=219.4
Q ss_pred CCCcCcccEEEecCccccCCCCcccc-cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (385)
|.++++|+.|++++|.+.+.+|..++ .+.+++ +|++++|.+++.+|.. .+++|++|++++|.+.+..+..+..++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~-~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR-YLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCC-EEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCC
Confidence 44566666666666666555665554 555555 5666666665444432 355666666666666555555666666
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL 161 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 161 (385)
+|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++.+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 66666666666655666666666666666666666665666666666666666666666665566666666666666666
Q ss_pred CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347 162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
+|.+.+..|.. +..+++|+.|+++.|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 245 ~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 245 YNNLTGPIPSS--LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CceeccccChh--HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 66665444432 5556666666666666655555556666666666666666655555556666666666666665544
Q ss_pred cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC
Q 043347 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS 321 (385)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 321 (385)
.. +..+..+++|+.|++++|.+.+..|..+... ++++.|++++|++.+..|..+..+++|+.|++++|.+.+.
T Consensus 323 ~~------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 323 KI------PVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred cC------ChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 31 2345556666666666666665555555444 5566666666665555555555555555555555555555
Q ss_pred CccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347 322 LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL 383 (385)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 383 (385)
.|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++..+..+++|+.|
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 55555555555555555555555555555555555555555555555555444445544444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-40 Score=331.03 Aligned_cols=371 Identities=36% Similarity=0.533 Sum_probs=273.3
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (385)
|.++++|++|++++|.+.+.+|..+.++.+++ .|++++|.+.+.+|..+. .+++|++|++++|.+.+..+..+..+++
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCC
Confidence 56788888999988888878888888888888 688888888866776654 7888888888888887777778888888
Q ss_pred CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccC
Q 043347 83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLN 162 (385)
Q Consensus 83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 162 (385)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 88888888887777777777788888888888877777777777778888888877777766666677777777777777
Q ss_pred CcccccCCCCcccCCCCCCceEEccccccCCCCCcc------------------------cccCCcccEEEccCcccccc
Q 043347 163 NTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSF------------------------FFNASKLYYLELAYNSFSGL 218 (385)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------------~~~~~~L~~L~l~~~~~~~~ 218 (385)
|.+.+..|.. +..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+.
T Consensus 342 n~l~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 342 NKFSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCcCcCChH--HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 7766554432 445566666666666554433444 44444555555555554444
Q ss_pred CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCC
Q 043347 219 IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298 (385)
Q Consensus 219 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 298 (385)
.+..+..+++|+.+++++|.+.... ...+..+++|+.|++++|.+.+..|..+.. .+++.|++++|++.+..
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRI------NSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAV 491 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCcc------ChhhccCCCCcEEECcCceeeeecCccccc--ccceEEECcCCccCCcc
Confidence 4444455555555555555544321 123445666777777777666655554432 57888888888888778
Q ss_pred CccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccc
Q 043347 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLN 378 (385)
Q Consensus 299 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 378 (385)
|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+.+++
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 571 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence 88888888899999999988888888888888999999999988888888888888999999999998888888888888
Q ss_pred cCccccC
Q 043347 379 SLRILSL 385 (385)
Q Consensus 379 ~L~~l~i 385 (385)
+|+.+++
T Consensus 572 ~L~~l~l 578 (968)
T PLN00113 572 SLVQVNI 578 (968)
T ss_pred ccCEEec
Confidence 8887764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-37 Score=270.15 Aligned_cols=362 Identities=22% Similarity=0.248 Sum_probs=290.3
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
+.|++++|++...-+..+.+++++. .+++.+|.++ .+|.... ...+|+.|++.+|.++......+..++.||.||++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq-~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQ-EVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcce-eeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4577777777755556667777777 5777777777 6665442 45567777777777776666677778888888888
Q ss_pred cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 169 (385)
.|.+...--..+..-.++++|++.+|++++.....|..+.+|..|.++.|+++...+..|.++++|+.|++..|.+.-.
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv- 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV- 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-
Confidence 8877733333566667888888888888887777888888888888888888877777788889999999888887532
Q ss_pred CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhh
Q 043347 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL 249 (385)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 249 (385)
+...|..+++|+.|.+..|++.......|..+.++++|++..|++......++.+++.|+.|+++.|.+.....
T Consensus 237 -e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~----- 310 (873)
T KOG4194|consen 237 -EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI----- 310 (873)
T ss_pred -hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-----
Confidence 33447888899999999998887777888889999999999999887778888899999999999998877643
Q ss_pred hHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC---Ccccc
Q 043347 250 FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS---LPITL 326 (385)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~ 326 (385)
..+..+++|+.|+++.|.+....+..+..+ ..+++|.+++|.+......+|.++.+|+.|+++.|.+... -...|
T Consensus 311 -d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 311 -DSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred -chhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 566778999999999999987777777777 7899999999999877777888899999999999987632 34466
Q ss_pred ccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347 327 GRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS 384 (385)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 384 (385)
.++++|+.|.+.||++..+--.+|.++++|+.|++.+|.|-.+-+..|..+ +|+.|.
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 779999999999999987677788899999999999999998889988877 777664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-36 Score=262.12 Aligned_cols=351 Identities=23% Similarity=0.270 Sum_probs=309.6
Q ss_pred CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347 2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (385)
.|-++++|+++++.+|.++ .+|.......+++ .|++.+|.|+ ++.....+.++.|+.||++.|.+.+.....|..-.
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~-~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ 173 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE-KLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKV 173 (873)
T ss_pred HHhcCCcceeeeeccchhh-hccccccccccee-EEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence 3678999999999999998 8988877777888 7999999999 88888888899999999999999988888899999
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL 161 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 161 (385)
++++|++++|.++......|..+.+|..|.+++|+++...++.|.++++|+.|++..|++...-.-.|.++++|+.+.+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 99999999999997777889999999999999999997777889999999999999999875545668899999999999
Q ss_pred CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347 162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
.|.+... ....|..+.++++|+++.|++...-..++.++++|+.|++++|.+..+..+....++.|++|+++.|+++.
T Consensus 254 rN~I~kL--~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 254 RNDISKL--DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hcCcccc--cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 9998754 23448899999999999999987788899999999999999999988888888899999999999999998
Q ss_pred cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC---CCCccccCCCCccEEECcCccc
Q 043347 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG---RIPKEIGNLINLTKLSLGYNNL 318 (385)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~ 318 (385)
.+. +.|..+..|+.|+++.|.+.......+..+ .++++|++.+|.++. ....+|.++++|+.|++.+|++
T Consensus 332 l~~------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 332 LDE------GSFRVLSQLEELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred CCh------hHHHHHHHhhhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 865 567788999999999999886655555555 899999999998764 3455688899999999999999
Q ss_pred cCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCc
Q 043347 319 SGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNK 365 (385)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 365 (385)
......+|.+++.|++|+|.+|.+..+.+.+|..+ .|.+|.+..-.
T Consensus 405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 97777899999999999999999998999999988 89988886543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.9e-32 Score=237.91 Aligned_cols=343 Identities=26% Similarity=0.399 Sum_probs=195.7
Q ss_pred cCcccEEEecCcccc-CCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCccc--------------
Q 043347 6 LAELEVLVLNNNLLT-GTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFK-------------- 70 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~-~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------- 70 (385)
+|=++-.++++|.+. +.+|..+..+.... .|.+...++. .+|+... .+.+|++|.+.+|++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~-WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMT-WLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhhee-EEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 444555666666665 34555555555554 5555555555 5555543 4555555555554443
Q ss_pred ---------Cc-CCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccc
Q 043347 71 ---------GP-IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140 (385)
Q Consensus 71 ---------~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 140 (385)
.. +|..+..+..|..||++.|++. ..|..+...+++-+|+++.|.+.+.....+.++..|-.|+++.|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 21 2334445555555555555554 455555555555555555555553333334455555555555555
Q ss_pred cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC-CCCCcccccCCcccEEEccCccccccC
Q 043347 141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS-GSIPSFFFNASKLYYLELAYNSFSGLI 219 (385)
Q Consensus 141 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (385)
+. .+|..+.++..|++|.+++|.+.-.. ...+..+..|+.|+|++..-+ ..++..+..+.+|..++++.|.+. ..
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 54 34444555556666666655543211 111334455555555554322 344555666666666666666665 34
Q ss_pred cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC-CC
Q 043347 220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG-RI 298 (385)
Q Consensus 220 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~ 298 (385)
|+.+..+++|+.|++++|.++++.. ....-.+|++|+++.|.++ ..|..++.+ +.++.|...+|++.. .+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~-------~~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNM-------TEGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeec-------cHHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCC
Confidence 5556666667777777766665433 1222245666666666666 445555555 566666666666653 35
Q ss_pred CccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCccc
Q 043347 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 299 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 367 (385)
|..++.+.+|+.+...+|.+. ..|+.+..|++|+.|.++.|.+. .+|++++-++.|..||+++|+-.
T Consensus 309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 666666777777777777665 66777777777777777777776 67777777777777777777544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2e-31 Score=234.56 Aligned_cols=321 Identities=30% Similarity=0.403 Sum_probs=266.9
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCcccc-CCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTG-SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (385)
++.|.+|++|++.+|.+. .+-..+..++.++ ++.++.|.+.. .+|.++| .+..|+.|+++.|.++ ..|..+..-+
T Consensus 51 L~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR-sv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AK 126 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR-SVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAK 126 (1255)
T ss_pred HHHHhhhhhhhhhhhhhH-hhhhhhccchhhH-HHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhc
Confidence 456777888888888776 4555566778888 68888887663 4899998 8999999999999998 6677888899
Q ss_pred CCcEEecccccccccCCCC-ccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEc
Q 043347 82 ELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL 160 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 160 (385)
++-+|++++|+|. .+|.. +-++..|-.|+++.|++. .+|+-+.++.+|++|.+++|.+....-..+..+++|++|.+
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 9999999999998 67764 568999999999999987 78888999999999999999887654455566778888888
Q ss_pred cCCccc-ccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347 161 LNNTLS-GNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239 (385)
Q Consensus 161 ~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 239 (385)
++.+-+ ..+|.+ +..+.+|..++++.|+++ ..++++..+++|+.|++++|++++... ......+|+.|+++.|.+
T Consensus 205 s~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTS--LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQL 280 (1255)
T ss_pred ccccchhhcCCCc--hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchh
Confidence 876543 345544 668889999999999988 688999999999999999999986533 345668999999999998
Q ss_pred cccchhhhhhhHhhhcccCceEEEccCCCCCC-CCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccc
Q 043347 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDG-VLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL 318 (385)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (385)
+.+ +.+++.+++|+.|...+|+++- -+|..+..+ ..++.+..++|++. ..|..++.|+.|+.|.++.|.+
T Consensus 281 t~L-------P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 281 TVL-------PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred ccc-------hHHHhhhHHHHHHHhccCcccccCCccchhhh-hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 875 4588899999999999998753 355566666 78888888888876 7899999999999999999999
Q ss_pred cCCCccccccCCCCCeEeccCCccc
Q 043347 319 SGSLPITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (385)
. .+|+.+.-++-|+.||+..|.-.
T Consensus 352 i-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 352 I-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred e-echhhhhhcCCcceeeccCCcCc
Confidence 8 89999999999999999999544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1.2e-30 Score=217.87 Aligned_cols=223 Identities=31% Similarity=0.425 Sum_probs=150.2
Q ss_pred CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347 4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL 83 (385)
Q Consensus 4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 83 (385)
.++..++.+++++|++. +.|++++.+..++ .++.+++++. .+|..+. .+.+++.++++.|.+. ..++.+..+..+
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~-~l~vs~n~ls-~lp~~i~-s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGELEALK-SLNVSHNKLS-ELPEQIG-SLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHHHHHHH-HhhcccchHh-hccHHHh-hhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 45677888999999887 8899999999888 6999999998 8888886 7888999999888877 566677888888
Q ss_pred cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccc--------------
Q 043347 84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTI-------------- 149 (385)
Q Consensus 84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------- 149 (385)
+.++-.+|++. ..|.++..+.+|..+++.+|.++ ..|...-.++.|++++...|.+. .+|..+
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 88888887776 56666666666666666665555 22222222555555555444443 233334
Q ss_pred --------cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcc
Q 043347 150 --------FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK 221 (385)
Q Consensus 150 --------~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 221 (385)
..|..|++++++.|.+. .+|. ....+++++..|++++|.+. ..++.+..+++|++|++++|.++. .+.
T Consensus 217 ki~~lPef~gcs~L~Elh~g~N~i~-~lpa-e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~ 292 (565)
T KOG0472|consen 217 KIRFLPEFPGCSLLKELHVGENQIE-MLPA-EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY 292 (565)
T ss_pred ccccCCCCCccHHHHHHHhcccHHH-hhHH-HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc
Confidence 44444555555544443 2222 22456677777777777776 455555666778888888877764 455
Q ss_pred cccCCCCccEEEecCCcc
Q 043347 222 ALGQLRNLERLGLQSNYL 239 (385)
Q Consensus 222 ~~~~~~~L~~L~l~~~~~ 239 (385)
.++++ +|+.|.+.||.+
T Consensus 293 sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccccc-eeeehhhcCCch
Confidence 56666 777777777754
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=4e-24 Score=215.41 Aligned_cols=339 Identities=20% Similarity=0.218 Sum_probs=252.9
Q ss_pred CCCCcCcccEEEecCccc------cCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCC
Q 043347 2 ELGNLAELEVLVLNNNLL------TGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPN 75 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~------~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 75 (385)
+|.+|++|+.|.+..+.. ...+|..+..++...+.|++.++.+. .+|..+ ...+|+.|++.++.+. .++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-cccc
Confidence 477899999999876532 23466777777654448999999888 888876 5789999999999876 5666
Q ss_pred CccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCC
Q 043347 76 NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL 155 (385)
Q Consensus 76 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 155 (385)
.+..+++|+.|+++++......| .+..+++|++|++.+|.....+|..+.++++|+.|++++|.....+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 77889999999999876444555 47788999999999987666888889999999999999886544556544 78899
Q ss_pred cEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccc-------cCcccccCCCC
Q 043347 156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG-------LIPKALGQLRN 228 (385)
Q Consensus 156 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~ 228 (385)
+.|++++|.....+|. ...+|+.|+++++.+.. ++..+ .+++|++|.+.++.... ..+.....+++
T Consensus 707 ~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CEEeCCCCCCcccccc-----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 9999998865544443 24578899999888763 33332 46778888876643211 11112234578
Q ss_pred ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL 308 (385)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L 308 (385)
|+.|++++|..... ++..++++++|+.|++++|...+..|..+ .+ ++|+.|++++|.....+|.. .++|
T Consensus 780 L~~L~Ls~n~~l~~------lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 780 LTRLFLSDIPSLVE------LPSSIQNLHKLEHLEIENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred chheeCCCCCCccc------cChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccc---cccc
Confidence 99999998854332 34567889999999999886555566554 23 78999999999776555543 3589
Q ss_pred cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCc
Q 043347 309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNK 365 (385)
Q Consensus 309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 365 (385)
+.|++++|.+. .+|..+..+++|+.|++++|.-...++..+..+++|+.+++++|.
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999999987 688888899999999999985444677777788999999999984
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.2e-28 Score=204.42 Aligned_cols=344 Identities=25% Similarity=0.358 Sum_probs=207.8
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
-.+..++..+|.+. ..|.+++.+.++. .+++.+++++ ..|++.. ++..|++++...|-+. .+|..++.+..|..|
T Consensus 137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~-~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS-SLPEDMVNLSKLS-KLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELL 211 (565)
T ss_pred hhhhhhhccccccc-cCchHHHHHHHHH-Hhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence 33444444444444 4444444444444 2455555554 4444444 2555666665555443 555666666666666
Q ss_pred ecccccccccCCCCccCcccccEEEeecccccCCCCccc-CCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347 87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL 165 (385)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 165 (385)
++..|.+. ..| .|.++..|.++.++.|.+. .+|... .+++++..|++++|+++ ..|..+..+.+|+.+++++|.+
T Consensus 212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc
Confidence 77766665 455 6666666666666666665 444443 36777788888888776 5666677777788888888777
Q ss_pred cccCCCCcccCCCCCCceEEccccccCCCC--------------------------------------C---cccccCCc
Q 043347 166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSI--------------------------------------P---SFFFNASK 204 (385)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------------------~---~~~~~~~~ 204 (385)
+. .|.. ++++ +|+.|-+.+|.+...- . .......+
T Consensus 288 s~-Lp~s--Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 288 SS-LPYS--LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT 363 (565)
T ss_pred cc-CCcc--cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence 63 3322 4455 6677766666432100 0 00111223
Q ss_pred ccEEEccCccccccCcccccC--CCCccEEEecCCcccccchhhhh-----------------hhHhhhcccCceEEEcc
Q 043347 205 LYYLELAYNSFSGLIPKALGQ--LRNLERLGLQSNYLTSSTSELMS-----------------LFSALVNCKSLKVIVLA 265 (385)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~ 265 (385)
.+.|++++-+++....+.|.. -.-.+.++++.|++.+.+..... ....++.+++|+.|+++
T Consensus 364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 445555555554433333321 12255566666655554432221 12346677788888888
Q ss_pred CCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCC
Q 043347 266 ENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345 (385)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 345 (385)
+|.+. ..|..++.+ ..++.++++.|.+. ..|.....+..++.+-.++|++....+..+..+.+|.+||+.+|.+. .
T Consensus 444 NN~Ln-~LP~e~~~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~ 519 (565)
T KOG0472|consen 444 NNLLN-DLPEEMGSL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-Q 519 (565)
T ss_pred cchhh-hcchhhhhh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-h
Confidence 77665 345555555 46888888888665 56666666667777777777777666666788888888888888887 6
Q ss_pred ChhhhhcCCCccEEEccCCccc
Q 043347 346 IPHEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 346 ~~~~~~~~~~L~~L~l~~~~~~ 367 (385)
+|..++++.+|+.|+++||++.
T Consensus 520 IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CChhhccccceeEEEecCCccC
Confidence 7777888888888888888886
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.4e-23 Score=208.77 Aligned_cols=342 Identities=21% Similarity=0.258 Sum_probs=256.4
Q ss_pred CcccccccceeceeEeecCccc------cCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccC
Q 043347 24 PASIFNLSSISTGLDFSNNSLT------GSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRI 97 (385)
Q Consensus 24 ~~~~~~~~~l~~~L~l~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 97 (385)
+.++.++.+++ .|.+.++... ..+|.++..-.+.|+.|.+.++.+. .+|..| ...+|+.|++.++.+. .+
T Consensus 551 ~~aF~~m~~L~-~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLL-FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCcccc-EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 34567788888 7888765432 2456665433356999999988876 556565 5789999999999887 67
Q ss_pred CCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCC
Q 043347 98 PRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177 (385)
Q Consensus 98 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 177 (385)
+..+..+++|++|+++++.....+| .++.+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|... .
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~ 702 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---N 702 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---C
Confidence 7788899999999999876554666 47889999999999987666788889999999999999987655666532 6
Q ss_pred CCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhh-hHhhhcc
Q 043347 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL-FSALVNC 256 (385)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~ 256 (385)
+++|+.|++++|.....++.. .++|+.|++++|.+... +..+ .+++|+.|.+.++............ .......
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 789999999988654334332 46789999999987643 4333 5788888888765422211111000 0122345
Q ss_pred cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347 257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336 (385)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 336 (385)
++|+.|++++|......|..+..+ ++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. ..+|+.|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence 789999999998877888888877 899999999998766677654 6899999999998665455543 46899999
Q ss_pred ccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS 384 (385)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 384 (385)
+++|.++ ..|..+..+++|+.|++++|+-...+|..+..+++|+.++
T Consensus 853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 853 LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred CCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 9999998 7888899999999999999865556776666677766654
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=3.4e-26 Score=209.73 Aligned_cols=361 Identities=29% Similarity=0.371 Sum_probs=220.6
Q ss_pred cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347 6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR 85 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 85 (385)
+-+|+.|++++|.+. .+|..+..++.++ .|+++.|.|. .+|... ..+.+|++++|.+|.+. ..|..+..+++|++
T Consensus 44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~-~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-SFPIQITLLSHLR-QLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQ-SLPASISELKNLQY 118 (1081)
T ss_pred eeeeEEeeccccccc-cCCchhhhHHHHh-hcccchhhHh-hCchhh-hhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence 345889999999887 7888888899999 6999999998 788544 47899999999888766 78888899999999
Q ss_pred EecccccccccCCCCccCcccc-------------------cEEEeecccccCCCCcccC-------------------C
Q 043347 86 VSLSFNQFTGRIPRDLGNSTKL-------------------KLLYLSFNNLIGEIPQEIG-------------------S 127 (385)
Q Consensus 86 L~l~~~~~~~~~~~~l~~l~~L-------------------~~L~l~~~~~~~~~~~~~~-------------------~ 127 (385)
|++++|.+. ..|..+..+..+ +.+++..+.+.+.++..+. +
T Consensus 119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred cccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence 999998765 344333332222 2222222222222222221 2
Q ss_pred CcCCcEE--------------------EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347 128 LRNLEIL--------------------RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG 187 (385)
Q Consensus 128 l~~L~~L--------------------~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (385)
+++|+.+ +.++|.++.... -....+|+.++++.+.+. .+|.. ...+.+|+.++..
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~w--i~~~~nle~l~~n 272 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEW--IGACANLEALNAN 272 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHH--HHhcccceEeccc
Confidence 2222222 222222221100 011235666666666655 34422 5567778888877
Q ss_pred ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHh---------------
Q 043347 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA--------------- 252 (385)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--------------- 252 (385)
.|.+. ..+..+....+|+.+....|.+.- .+......+.|+.|++..|.+...++..+.....
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 77764 344444555666666666666653 2334455666666666666665555433221111
Q ss_pred ----hhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc
Q 043347 253 ----LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR 328 (385)
Q Consensus 253 ----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 328 (385)
-..++.|..|++.+|.+++...+.+... .+|+.|++++|.+.......+.+++.|++|++++|+++ .+|+....
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence 0123345666777777776666655555 67778888887777555556677777778888887777 66677777
Q ss_pred CCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC-CCcccccccCcccc
Q 043347 329 LKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI-PSCLGDLNSLRILS 384 (385)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~ 384 (385)
++.|++|...+|++. ..| .+.+++.|+.+|++-|+++.+. |..... ++|++|+
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd 482 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD 482 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence 777777777777776 566 5566777777777777766542 332221 5566655
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2.1e-24 Score=198.19 Aligned_cols=241 Identities=30% Similarity=0.338 Sum_probs=162.7
Q ss_pred CcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccE
Q 043347 128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYY 207 (385)
Q Consensus 128 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 207 (385)
..+|++++++.+.+. .+|+++..+.+|+.++..+|.+.. .|.. ......|+.+....|.+. ..+......++|++
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~r--i~~~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLR--ISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHH--HhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 458888888888876 455888888888888888887742 2211 223445555555555544 23444444555666
Q ss_pred EEccCccccccCcccc-------------------------cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEE
Q 043347 208 LELAYNSFSGLIPKAL-------------------------GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262 (385)
Q Consensus 208 L~l~~~~~~~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 262 (385)
|++..|++.......+ ..++.|+.|.+.+|.+++. .+..+.++++|+.|
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~------c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS------CFPVLVNFKHLKVL 388 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc------chhhhccccceeee
Confidence 6665554433211111 2234566666666666553 56778888999999
Q ss_pred EccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcc
Q 043347 263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKF 342 (385)
Q Consensus 263 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 342 (385)
++++|.+.......+..+ ..|++|.+++|++. .+|.....++.|+.|...+|.+. .+| .+..+++|+.+|++.|.+
T Consensus 389 hLsyNrL~~fpas~~~kl-e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLRKL-EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eecccccccCCHHHHhch-HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence 999998875555555555 78999999999987 56677888889999999998887 667 677888999999999988
Q ss_pred cCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347 343 EGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL 383 (385)
Q Consensus 343 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 383 (385)
+.........-|+|+.||++||.-....-..|..++++...
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQM 505 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhhe
Confidence 75444433333899999999987554445555555555443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-22 Score=170.16 Aligned_cols=350 Identities=21% Similarity=0.230 Sum_probs=241.1
Q ss_pred cccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc-cccccc
Q 043347 18 LLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF-NQFTGR 96 (385)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~ 96 (385)
.++ ++|. +++.-.+.+.|..|+|+ .+|+.+|..+++|+.|++++|.+..+.+++|.+++.+..|-+.+ |.|++.
T Consensus 57 GL~-eVP~---~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 57 GLT-EVPA---NLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred Ccc-cCcc---cCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 344 5665 45555558999999999 99999999999999999999999999999999999998887776 888854
Q ss_pred CCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc------ccC-
Q 043347 97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS------GNL- 169 (385)
Q Consensus 97 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~------~~~- 169 (385)
-...|+++..|+-|.+.-|.+.-...++|..++++..|.+.+|.+...-...+..+..++.+.+..|.+. +..
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 4457899999999999999888777788999999999999999887555556777777787777666521 000
Q ss_pred ---CCCcccCCCC----------------------CCceE--Ecc-ccccC-CCCCcccccCCcccEEEccCccccccCc
Q 043347 170 ---PSSKKLIGLP----------------------NLEGL--ILG-LNNFS-GSIPSFFFNASKLYYLELAYNSFSGLIP 220 (385)
Q Consensus 170 ---~~~~~~~~~~----------------------~L~~L--~l~-~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 220 (385)
.....++.+. .++.+ .+. .+.+. ......|..+++|++|++++|+++..-.
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0000011111 11111 001 11111 1123457788889999999988888777
Q ss_pred ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC---
Q 043347 221 KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR--- 297 (385)
Q Consensus 221 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--- 297 (385)
.+|.....+++|.+..|++..+.. ..|.++..|+.|++++|.++...|..+... .++.+|.+-.|.+.-.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~------~~f~~ls~L~tL~L~~N~it~~~~~aF~~~-~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSS------GMFQGLSGLKTLSLYDNQITTVAPGAFQTL-FSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHH------HhhhccccceeeeecCCeeEEEeccccccc-ceeeeeehccCcccCccch
Confidence 888888888999988888776533 467788888889999998887777777766 6888888876643210
Q ss_pred --CCccc-----------cCCCCccEEECcCccccC---CCcc---------ccccCCC---------------------
Q 043347 298 --IPKEI-----------GNLINLTKLSLGYNNLSG---SLPI---------TLGRLKK--------------------- 331 (385)
Q Consensus 298 --~~~~~-----------~~~~~L~~L~l~~~~~~~---~~~~---------~~~~~~~--------------------- 331 (385)
..+|+ ++...++.+.+++..+.+ ..++ +...|+.
T Consensus 365 ~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~ 444 (498)
T KOG4237|consen 365 AWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPV 444 (498)
T ss_pred HHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCc
Confidence 00111 122346666666554331 1111 1111111
Q ss_pred -CCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347 332 -LQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL 383 (385)
Q Consensus 332 -L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 383 (385)
-..+++.+|+++ ..|.. .+.+| .+|+++|+++.-.-..|.++.+|.++
T Consensus 445 d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl 493 (498)
T KOG4237|consen 445 DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL 493 (498)
T ss_pred hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence 235677788887 44444 45677 89999999986667778899888765
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=1.4e-18 Score=163.90 Aligned_cols=260 Identities=25% Similarity=0.313 Sum_probs=122.0
Q ss_pred cEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccc
Q 043347 60 KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQN 139 (385)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 139 (385)
..|+++++.++ .+|..+. ++|+.|++.+|.+. .+|.. +++|++|++++|.++ .+|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 34555555544 3333332 24555555555544 23321 345555555555544 22321 235555555555
Q ss_pred ccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccC
Q 043347 140 NLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLI 219 (385)
Q Consensus 140 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (385)
.+.. ++. ..+.|+.|++++|.+.. +|. ..++|+.|++++|.+... +.. ...|+.|.+++|.+...
T Consensus 273 ~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~-----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~L- 337 (788)
T PRK15387 273 PLTH-LPA---LPSGLCKLWIFGNQLTS-LPV-----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSL- 337 (788)
T ss_pred chhh-hhh---chhhcCEEECcCCcccc-ccc-----cccccceeECCCCccccC-CCC---cccccccccccCccccc-
Confidence 4432 111 12345555555555442 221 124455555555554421 111 12345555555555432
Q ss_pred cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCC
Q 043347 220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299 (385)
Q Consensus 220 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 299 (385)
+. ...+|+.|++++|.++..+. . .++|+.|++++|.+.. +|.. +.+|+.|++++|++.+ +|
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls~LP~----l------p~~L~~L~Ls~N~L~~-LP~l----~~~L~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLASLPT----L------PSELYKLWAYNNRLTS-LPAL----PSGLKELIVSGNRLTS-LP 398 (788)
T ss_pred cc---cccccceEecCCCccCCCCC----C------Ccccceehhhcccccc-Cccc----ccccceEEecCCcccC-CC
Confidence 21 11355566666655554322 0 1345555555555543 2221 1355666666665552 22
Q ss_pred ccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCC
Q 043347 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPS 372 (385)
Q Consensus 300 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 372 (385)
.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..++.+++|+.|++++|++++..+.
T Consensus 399 ~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 399 VL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Cc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 21 235666666666665 23332 234556666666665 4555566666666666666666554443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=7e-18 Score=159.32 Aligned_cols=261 Identities=26% Similarity=0.298 Sum_probs=177.8
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.|+++++.++ .+|..+. ++|+.|.+.+|.++. ++. ..++|++|++++|.+. .+|.. .++|+.|++.+|
T Consensus 205 ~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred EEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 5777777777 7777553 367778888777763 332 2467888888888776 44432 457778888877
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+. .+|.. ..+|+.|++++|.++. +|. ..++|+.|++++|.+.. +|. ....|+.|.+.+|.+.. +
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~-----lp~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTS-L 337 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC-----CcccccccccccCcccc-c
Confidence 765 34432 2467778888877763 232 24678888888887763 232 12356777777777663 2
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (385)
+. ...+|+.|++++|+++.. +. ..++|+.|++++|.+..++. ..++|+.|++++|.+.+ .|.
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt~-LP~ 399 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTS-LPV 399 (788)
T ss_pred cc---cccccceEecCCCccCCC-CC---CCcccceehhhccccccCcc----------cccccceEEecCCcccC-CCC
Confidence 22 124788888888888753 32 23578888888888775432 12468888898888874 333
Q ss_pred cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhh
Q 043347 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEF 350 (385)
Q Consensus 276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 350 (385)
. +.+++.|++++|++.+ +|.. +.+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 400 l----~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 L----PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c----ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 2578889999998874 4432 347888999999988 678888888999999999999987766655
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-20 Score=157.15 Aligned_cols=282 Identities=23% Similarity=0.146 Sum_probs=136.8
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecc-cccccccCccccCCCCCcEEEc
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMSTLKTLSL 160 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l 160 (385)
.-..+++..|+|...-+..|+.+++|+.|+++.|.|....|++|..++.+..|.+.+ |++++.....|..+..++-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 445566677777644445666777777777777777666666777777666666554 6666555566666666666666
Q ss_pred cCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccc
Q 043347 161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240 (385)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (385)
.-|.+.-. .. ..+..++++..|.+.++.+.......+..+..++++.+..|.+..+ ++++.+...
T Consensus 148 Nan~i~Ci-r~-~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~~-------- 212 (498)
T KOG4237|consen 148 NANHINCI-RQ-DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLADD-------- 212 (498)
T ss_pred Chhhhcch-hH-HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccchhhhH--------
Confidence 55554321 11 2255666666666666665544444555566666666655542111 111111100
Q ss_pred ccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCC-CccccCCCCccEEECcCcccc
Q 043347 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI-PKEIGNLINLTKLSLGYNNLS 319 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 319 (385)
....+..++.........+.+..+..+....+.....++.+=-.+.|...... ...|..+++|+.|++++|+++
T Consensus 213 -----~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 213 -----LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred -----HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 00001111111111111122221111111111110001100011112111111 223455555666666666555
Q ss_pred CCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347 320 GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL 383 (385)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 383 (385)
++-+.+|.+...++.|.|.+|++..+...+|.++..|+.|++.+|+|+.+.|..|..+.+|.+|
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 5555555555556666666665555555555555555666666666655555555555555444
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=3.8e-19 Score=156.81 Aligned_cols=81 Identities=22% Similarity=0.132 Sum_probs=40.0
Q ss_pred EEccCCccc-CcCCCCccCCCCCcEEecccccccc----cCCCCccCcccccEEEeecccccC------CCCcccCCCcC
Q 043347 62 LYVSYNQFK-GPIPNNLWHCKELSRVSLSFNQFTG----RIPRDLGNSTKLKLLYLSFNNLIG------EIPQEIGSLRN 130 (385)
Q Consensus 62 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~ 130 (385)
|++..+.+. ......+..+..|+.++++++.+.. .++..+...+.++++++.++.+.. .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445455444 2233344555667777777666532 123334455566666666654431 11223344555
Q ss_pred CcEEEecccccc
Q 043347 131 LEILRIDQNNLV 142 (385)
Q Consensus 131 L~~L~l~~~~~~ 142 (385)
|+.|++++|.+.
T Consensus 83 L~~L~l~~~~~~ 94 (319)
T cd00116 83 LQELDLSDNALG 94 (319)
T ss_pred eeEEEccCCCCC
Confidence 555555555544
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=8.3e-19 Score=154.62 Aligned_cols=259 Identities=24% Similarity=0.231 Sum_probs=120.1
Q ss_pred EEecccccccc-cCCCCccCcccccEEEeecccccCC----CCcccCCCcCCcEEEeccccccc------ccCccccCCC
Q 043347 85 RVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGE----IPQEIGSLRNLEILRIDQNNLVG------FIPDTIFNMS 153 (385)
Q Consensus 85 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~ 153 (385)
.|++..+.+.+ .....+..+..|+++++.++.+... ++..+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35555555542 2223445566788888888776432 33345566677888777765541 1223344566
Q ss_pred CCcEEEccCCcccccCCCCcccCCC---CCCceEEccccccCCC----CCcccccC-CcccEEEccCcccccc----Ccc
Q 043347 154 TLKTLSLLNNTLSGNLPSSKKLIGL---PNLEGLILGLNNFSGS----IPSFFFNA-SKLYYLELAYNSFSGL----IPK 221 (385)
Q Consensus 154 ~L~~l~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~ 221 (385)
+|+.|++++|.+....+.. +..+ ++|++|++++|.+.+. ....+..+ ++|+.+++++|.++.. ...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~--~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 82 GLQELDLSDNALGPDGCGV--LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred ceeEEEccCCCCChhHHHH--HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 6777776666554211110 1111 3355666555554311 11122333 4555555555544321 122
Q ss_pred cccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcc
Q 043347 222 ALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301 (385)
Q Consensus 222 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 301 (385)
.+..++.|+.|++++|.+.+. ....+...+..+++|+.|++++|.+.+..... ....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~---------------------l~~~ 216 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDA--GIRALAEGLKANCNLEVLDLNNNGLTDEGASA---------------------LAET 216 (319)
T ss_pred HHHhCCCcCEEECcCCCCchH--HHHHHHHHHHhCCCCCEEeccCCccChHHHHH---------------------HHHH
Confidence 233444555555555544431 11112233334445555555554443221111 1122
Q ss_pred ccCCCCccEEECcCccccCCCccccc-----cCCCCCeEeccCCcccCCC----hhhhhcCCCccEEEccCCcccc
Q 043347 302 IGNLINLTKLSLGYNNLSGSLPITLG-----RLKKLQGLDLQNNKFEGPI----PHEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 302 ~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~ 368 (385)
+..+++|++|++++|.+.+.....+. ..+.|+.|++++|.+++.. ...+..+++|+.+++++|.++.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 34455566666666655432111111 1245666666666554221 2223334556666666666553
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=6.2e-16 Score=147.07 Aligned_cols=245 Identities=27% Similarity=0.416 Sum_probs=111.1
Q ss_pred ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347 9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL 88 (385)
Q Consensus 9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 88 (385)
.+.|+++++.++ .+|..+. ..+. .|++++|.++ .+|..++ ++|++|++++|.++ .++..+. ++|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~-~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQIT-TLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCc-EEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 445555555554 3444332 2233 4555555555 5555443 35555555555554 2222221 24555555
Q ss_pred ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccccc
Q 043347 89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN 168 (385)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 168 (385)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. ++..+ .+
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~--------------- 304 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PS--------------- 304 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hh---------------
Confidence 555544 3343331 34555555555444 3333322 245555555554442 12111 12
Q ss_pred CCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhh
Q 043347 169 LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS 248 (385)
Q Consensus 169 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 248 (385)
.|+.|++++|.+.. .+..+ .++|+.|++++|.++.. +..+ +++|+.|++++|.+...+.
T Consensus 305 -----------sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP~---- 363 (754)
T PRK15370 305 -----------GITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLPE---- 363 (754)
T ss_pred -----------hHHHHHhcCCcccc-CCccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCCh----
Confidence 34444444444432 11111 13455555555555432 2222 2455566666555543321
Q ss_pred hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcc----ccCCCCccEEECcCcccc
Q 043347 249 LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE----IGNLINLTKLSLGYNNLS 319 (385)
Q Consensus 249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~ 319 (385)
.+ .+.|+.|++++|.+.. .|..+ +..++.|++++|++. .+|.. ...++.+..+++.+|++.
T Consensus 364 ---~l--p~~L~~LdLs~N~Lt~-LP~~l---~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 364 ---TL--PPTITTLDVSRNALTN-LPENL---PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ---hh--cCCcCEEECCCCcCCC-CCHhH---HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 11 1355566666655553 22222 134556666666554 22322 223456666777766665
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=1.1e-15 Score=145.41 Aligned_cols=246 Identities=27% Similarity=0.387 Sum_probs=120.4
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL 161 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 161 (385)
+...|+++++.+. .+|..+ .+.|+.|++++|.+. .+|..+. .+|+.|++++|.++. +|..+ ..+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence 3445555555444 334333 234555555555554 3333332 355555555555542 23222 1345556665
Q ss_pred CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347 162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
+|.+. .+|.. + ..+|+.|+++.|.+.. ++..+. ++|+.|++++|+++.. +..+ .++|+.|++++|.+..
T Consensus 250 ~N~L~-~LP~~--l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 250 INRIT-ELPER--L--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred CCccC-cCChh--H--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc
Confidence 55554 22321 1 1345566666555542 222221 3566666666655532 2222 1355666666665554
Q ss_pred cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC
Q 043347 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS 321 (385)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 321 (385)
.+.. + .++|+.|++++|.+.+ .|..+ +++++.|++++|++. .+|..+ .++|+.|++++|.+. .
T Consensus 319 LP~~-------l--~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 319 LPET-------L--PPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-N 381 (754)
T ss_pred CCcc-------c--cccceeccccCCcccc-CChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-C
Confidence 3221 1 1456666666665553 23222 246666666666655 233333 246666666666665 3
Q ss_pred CccccccCCCCCeEeccCCcccCCChhhh----hcCCCccEEEccCCccc
Q 043347 322 LPITLGRLKKLQGLDLQNNKFEGPIPHEF----CHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 322 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~ 367 (385)
+|..+. .+|+.|++++|++. .+|..+ ..++.+..|++.+|+++
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 443332 24666666666665 333322 22456666666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=2.2e-18 Score=128.43 Aligned_cols=155 Identities=30% Similarity=0.560 Sum_probs=108.1
Q ss_pred CcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347 5 NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS 84 (385)
Q Consensus 5 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 84 (385)
++..++.|.+++|+++ .+|+.+.++.++. .|++++|+++ .+|..+- +++.|+.|+++.|++. ..+..|+.++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nle-vln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLE-VLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhh-hhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence 4566677777777776 6777777777777 6777777777 6676664 6777777777777665 6666777777777
Q ss_pred EEeccccccc-ccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347 85 RVSLSFNQFT-GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163 (385)
Q Consensus 85 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 163 (385)
+||+++|.+. ..+|..|..+..|+.|.++.|.+. .+|..++++.+|+.|.+.+|.+. .+|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 7777776554 345566666777777777777765 66677777777777777777665 45666667777777777776
Q ss_pred ccc
Q 043347 164 TLS 166 (385)
Q Consensus 164 ~~~ 166 (385)
++.
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 665
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3.8e-16 Score=116.55 Aligned_cols=155 Identities=30% Similarity=0.450 Sum_probs=79.3
Q ss_pred CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347 55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL 134 (385)
Q Consensus 55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 134 (385)
.+.+++.|.+++|.++ ..+..++.+.+|++|++.+|++. .+|..++.+++|+.|++.-|++. ..|+.|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444455555555544 33444555555555555555554 44555555555555555544443 455555555555555
Q ss_pred Eeccccccc-ccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc
Q 043347 135 RIDQNNLVG-FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN 213 (385)
Q Consensus 135 ~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 213 (385)
++..|.+.. .+|..|..++.|+.|+++.|.+. .+|.. .+.+.+|+.|.+..|.+. ..+..++.+..|++|++.+|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~d--vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPD--VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChh--hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 555544332 24444444555555555555544 22322 334555555555555544 34444555666666666666
Q ss_pred ccc
Q 043347 214 SFS 216 (385)
Q Consensus 214 ~~~ 216 (385)
.+.
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 665
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1e-12 Score=127.39 Aligned_cols=327 Identities=20% Similarity=0.271 Sum_probs=146.5
Q ss_pred eEeecCccccCCChhhhcCCCcccEEEccCCc--ccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ--FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF 114 (385)
Q Consensus 37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 114 (385)
+.+.++.+. .++... .++.|++|-+.++. +.......|..++.|++||+++|.-.+.+|..++.+.+|++|++.+
T Consensus 528 ~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 528 MSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred EEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 444455444 333333 34455555555553 2222233345555666666655544445555555566666666655
Q ss_pred ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC
Q 043347 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS 194 (385)
Q Consensus 115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 194 (385)
+.+. .+|..+.++..|.+|++..+......+.....+++|++|.+..............+..+.+|+.+....... .
T Consensus 605 t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~ 681 (889)
T KOG4658|consen 605 TGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--L 681 (889)
T ss_pred CCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--H
Confidence 5554 555555555566666555544332333333445555555554432111000001122333333333322211 0
Q ss_pred CCcccccCCccc----EEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347 195 IPSFFFNASKLY----YLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270 (385)
Q Consensus 195 ~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (385)
....+..+..|. .+.+.++... .....+..+++|+.|.+.++...+.......-......++++..+.+.++...
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence 001111122222 2222222221 12334566777777777777654321111000000001223333333333221
Q ss_pred CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCCh--
Q 043347 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIP-- 347 (385)
Q Consensus 271 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-- 347 (385)
..+.+. ...++++.|.+..|.....+......+..++++.+..+.+.+. .....+.++++..+.+.+-.+.....
T Consensus 761 -r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~ 838 (889)
T KOG4658|consen 761 -RDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEE 838 (889)
T ss_pred -cccchh-hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhc
Confidence 111111 2237888888888877766665555566666655555555433 23344555555555554433221111
Q ss_pred -hhhhcCCCccEEEccCC-cccccCCC
Q 043347 348 -HEFCHFSRLYKFYLNRN-KLSGSIPS 372 (385)
Q Consensus 348 -~~~~~~~~L~~L~l~~~-~~~~~~~~ 372 (385)
.....+|.+.++.+.+| ......|+
T Consensus 839 ~p~l~~~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 839 CPKLGKLPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred CcccccCccccccceeccccceeecCC
Confidence 12345777777888776 33333444
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=8.3e-14 Score=115.73 Aligned_cols=237 Identities=23% Similarity=0.220 Sum_probs=129.5
Q ss_pred cccceeceeEeecCccccCC---ChhhhcCCCcccEEEccCCcccCc-----------CCCCccCCCCCcEEeccccccc
Q 043347 29 NLSSISTGLDFSNNSLTGSF---PDDMCEGLPRLKGLYVSYNQFKGP-----------IPNNLWHCKELSRVSLSFNQFT 94 (385)
Q Consensus 29 ~~~~l~~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~ 94 (385)
...++. .+++++|.+.... ......+.++|+..++++-. ++. +..++..+++|+++++|+|.+.
T Consensus 28 ~~~s~~-~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLT-KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceE-EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 344445 5777777665211 12223355667777766531 111 2234456778888888888765
Q ss_pred ccCCCC----ccCcccccEEEeecccccCCCCcc-------------cCCCcCCcEEEeccccccccc----CccccCCC
Q 043347 95 GRIPRD----LGNSTKLKLLYLSFNNLIGEIPQE-------------IGSLRNLEILRIDQNNLVGFI----PDTIFNMS 153 (385)
Q Consensus 95 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~ 153 (385)
...+.. +..+..|++|.+.+|++....... .+.-++|+.+....|++.... ...+..++
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 444433 456778888888887765332222 233456777777666654332 23344556
Q ss_pred CCcEEEccCCcccc--cCCCCcccCCCCCCceEEccccccCC----CCCcccccCCcccEEEccCccccccCcccc----
Q 043347 154 TLKTLSLLNNTLSG--NLPSSKKLIGLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLELAYNSFSGLIPKAL---- 223 (385)
Q Consensus 154 ~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 223 (385)
.|+.+.+..|.+.. ..-....+.++++|+.|++.+|.++. .....+...++|+.+++++|.+......++
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 77777776666531 10111235566777777777666542 122344455666677776666654433322
Q ss_pred -cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347 224 -GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269 (385)
Q Consensus 224 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (385)
...|.|+.+.+.+|.++...... +.......+.|..|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~--la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALA--LAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHH--HHHHHhcchhhHHhcCCcccc
Confidence 23566677777666655433222 223344456666666666655
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=3.3e-13 Score=112.24 Aligned_cols=250 Identities=21% Similarity=0.211 Sum_probs=142.4
Q ss_pred ccCCCCCcEEeccccccccc----CCCCccCcccccEEEeecc---cccCCCCcc-------cCCCcCCcEEEecccccc
Q 043347 77 LWHCKELSRVSLSFNQFTGR----IPRDLGNSTKLKLLYLSFN---NLIGEIPQE-------IGSLRNLEILRIDQNNLV 142 (385)
Q Consensus 77 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~---~~~~~~~~~-------~~~l~~L~~L~l~~~~~~ 142 (385)
+.....+..+++++|.+... +...+...+.|+.-+++.- +....+|.+ +..+++|+.+++++|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34566777778887766522 2233455566777666542 222233333 234567777777777655
Q ss_pred cccCcc----ccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc
Q 043347 143 GFIPDT----IFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL 218 (385)
Q Consensus 143 ~~~~~~----~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (385)
...+.. +..+.+|+.|.+.+|.+...-... +. ..|.++. .....+.-+.|+.+....|.+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~--l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR--LG--RALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH--HH--HHHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 443332 335666777777666653210000 00 0111111 112234456788888888776544
Q ss_pred C----cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc----cccccceeEEEee
Q 043347 219 I----PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI----GNLSVSVEEIYMY 290 (385)
Q Consensus 219 ~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~l~~L~l~ 290 (385)
. ...|...+.|+.+.++.|.+...+. .....++.+|++|+.|++.+|.++......+ +.+ +.++++++.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~El~l~ 249 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRELNLG 249 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chheeeccc
Confidence 3 3455667888888888887764432 3456788889999999998887765433322 233 456677777
Q ss_pred ccccCCCCCccc-----cCCCCccEEECcCccccCC----CccccccCCCCCeEeccCCcc
Q 043347 291 KCNIHGRIPKEI-----GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNNKF 342 (385)
Q Consensus 291 ~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 342 (385)
+|.+......++ ...|+|+.+.+.+|.++.. +..++...+.|..|++++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 766654433222 2356777777777766532 223444456677777777776
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=1.3e-11 Score=119.68 Aligned_cols=316 Identities=21% Similarity=0.272 Sum_probs=194.9
Q ss_pred cCcccEEEecCccccCCCCcccccccceeceeEeecCc--cccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347 6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNS--LTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL 83 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 83 (385)
-...|+.++.++.+. .++.+. +++.+. +|-+..+. +. .++.++|..+|.|++||+++|.--+.+|..++.+-+|
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~-tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLR-TLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccc-eEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 346688888888876 444433 444666 57777775 56 8888889899999999999987666899999999999
Q ss_pred cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccc--ccccCccccCCCCCcEEEcc
Q 043347 84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNL--VGFIPDTIFNMSTLKTLSLL 161 (385)
Q Consensus 84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~l~l~ 161 (385)
|+|+++++.+. .+|..+.++..|.+|++..+......+.....+.+|++|.+..... +......+..+.+|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999988 8999999999999999998876556666677799999999876541 11122334456666666554
Q ss_pred CCcccccCCCCcccCCCCCCc----eEEccccccCCCCCcccccCCcccEEEccCccccccCccccc-----C-CCCccE
Q 043347 162 NNTLSGNLPSSKKLIGLPNLE----GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG-----Q-LRNLER 231 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~-~~~L~~ 231 (385)
..... .. ..+.....|. .+.+..+... .....+..+++++.|.+.++.+.+....... . ++++..
T Consensus 677 ~~s~~-~~---e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 677 ISSVL-LL---EDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred cchhH-hH---hhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 33320 00 0011222222 2222222211 3345567778888888888877543222221 1 334444
Q ss_pred EEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC-CCccccCCCCccE
Q 043347 232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR-IPKEIGNLINLTK 310 (385)
Q Consensus 232 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~ 310 (385)
+.+.++..... +.+..-.++|+.|++..+...+.+.+..... ..+..+.+..+.+.+. .....+.++++..
T Consensus 752 ~~~~~~~~~r~-------l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~-~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 752 VSILNCHMLRD-------LTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL-LELKELILPFNKLEGLRMLCSLGGLPQLYW 823 (889)
T ss_pred HHhhccccccc-------cchhhccCcccEEEEecccccccCCCHHHHh-hhcccEEecccccccceeeecCCCCceeEe
Confidence 44444432221 1233445889999999887766655555444 4555555666655544 2333455555555
Q ss_pred EECcCccccCCCcc----ccccCCCCCeEeccCC
Q 043347 311 LSLGYNNLSGSLPI----TLGRLKKLQGLDLQNN 340 (385)
Q Consensus 311 L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~ 340 (385)
+.+..-.+. .+.. -...+|.+..+.+.+|
T Consensus 824 ~~l~~~~l~-~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 824 LPLSFLKLE-ELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred cccCccchh-heehhcCcccccCccccccceecc
Confidence 555544322 1111 1234555666666664
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.4e-12 Score=109.29 Aligned_cols=188 Identities=22% Similarity=0.183 Sum_probs=133.8
Q ss_pred cCCCCCCceEEccccccCCCCC-cccccCCcccEEEccCcccccc--CcccccCCCCccEEEecCCcccccchhhhhhhH
Q 043347 175 LIGLPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYNSFSGL--IPKALGQLRNLERLGLQSNYLTSSTSELMSLFS 251 (385)
Q Consensus 175 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 251 (385)
-..+..|+++.+..++...... .....|++++.|++++|-+... .......+|+|+.|+++.|++.......
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----- 191 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----- 191 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----
Confidence 3466788888998887764332 4667789999999999876533 2345578899999999998876543321
Q ss_pred hhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCc--cccccC
Q 043347 252 ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP--ITLGRL 329 (385)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~ 329 (385)
.-..+++++.|.++.|.++-....++...+|+++.|.+..|...........-+..|++|+|++|.+. ..+ ...+.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccc
Confidence 12256788999999998875555555556689999999998533222222344668999999999887 333 455778
Q ss_pred CCCCeEeccCCcccCCChhh------hhcCCCccEEEccCCcccc
Q 043347 330 KKLQGLDLQNNKFEGPIPHE------FCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~ 368 (385)
+.|..|+++.|.+...-... -..+++|+.|+++.|++.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 89999999998776432211 2458999999999999853
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.2e-12 Score=109.44 Aligned_cols=212 Identities=21% Similarity=0.217 Sum_probs=152.3
Q ss_pred cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC--CCcccccCCcccEEEccCccccccCc-ccccCC
Q 043347 150 FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS--IPSFFFNASKLYYLELAYNSFSGLIP-KALGQL 226 (385)
Q Consensus 150 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 226 (385)
.++.+|+++.+.++.+.. .+.......+++++.|+++.|-+..+ +......+|+|+.|+++.|.+..... ..-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 367889999998877652 22213366889999999999877643 34556789999999999998753322 222467
Q ss_pred CCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCC-ccccCC
Q 043347 227 RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP-KEIGNL 305 (385)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~ 305 (385)
++|+.|.++.|.++. .+ ....+..+|.|+.|++.+|..-... ..-...+..+++|++++|++.+... ...+.+
T Consensus 197 ~~lK~L~l~~CGls~-k~----V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-KD----VQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCH-HH----HHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccc
Confidence 899999999999883 22 4456778999999999999522111 1112233689999999999875332 345678
Q ss_pred CCccEEECcCccccCC-Cccc-----cccCCCCCeEeccCCcccC-CChhhhhcCCCccEEEccCCcccc
Q 043347 306 INLTKLSLGYNNLSGS-LPIT-----LGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 306 ~~L~~L~l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 368 (385)
|.|..|+++.+.+++. .|++ ...+++|++|++..|++.+ .....+..+++|+.|.+..+.++.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 9999999999988753 2222 2457899999999999952 222345568899999998887764
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1e-10 Score=91.23 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=31.3
Q ss_pred CCCCccEEEecCCcccccchhhhhhhHhhh-cccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc
Q 043347 225 QLRNLERLGLQSNYLTSSTSELMSLFSALV-NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG 303 (385)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~ 303 (385)
++..+++|++.++.++.. ..+. .+.+|+.|++++|.+.... .+..+ ++++.|++++|.+.+.......
T Consensus 17 n~~~~~~L~L~~n~I~~I--------e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L-~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--------ENLGATLDKLEVLDLSNNQITKLE--GLPGL-PRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--T--T-----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccccc--------cchhhhhcCCCEEECCCCCCcccc--CccCh-hhhhhcccCCCCCCccccchHH
Confidence 344566677777666542 2233 3456666666666655321 12222 4555555555555532221112
Q ss_pred CCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCCh---hhhhcCCCccEEEc
Q 043347 304 NLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIP---HEFCHFSRLYKFYL 361 (385)
Q Consensus 304 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 361 (385)
.+|+|++|++++|++.+. ....+..+++|+.|++.+|+++.... ..+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 355555555555555421 11233445555555555555543211 12334555555443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=7.5e-11 Score=96.56 Aligned_cols=133 Identities=25% Similarity=0.314 Sum_probs=98.7
Q ss_pred CCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcc
Q 043347 126 GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKL 205 (385)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 205 (385)
..+..|+++++++|.++ ...+.+.-.|.++.|++++|.+.... .+..+++|+.|++++|.++ ....+-..+.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh----hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 34568888888888876 44556667788888888888876432 2567888888888888776 344555667888
Q ss_pred cEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347 206 YYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG 271 (385)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (385)
++|.+++|.+.+. .-+..+-+|..|++++|++.+... .+.++++|+|+.+.+.+|++.+
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-----V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-----VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-----hcccccccHHHHHhhcCCCccc
Confidence 8888888877643 345667788888888888876543 5678888888888888887764
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=9e-10 Score=85.92 Aligned_cols=127 Identities=27% Similarity=0.276 Sum_probs=37.5
Q ss_pred CCcEEEecccccccccCcccc-CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEE
Q 043347 130 NLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYL 208 (385)
Q Consensus 130 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 208 (385)
++++|++.++.+... +.+. .+.+|+.|++++|.+... . .+..++.|+.|+++.|.++.........+++|++|
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~---~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E---GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T---T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c---CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 445555555544422 2232 344555555555555422 1 13445556666666665553221122345666666
Q ss_pred EccCccccccC-cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEcc
Q 043347 209 ELAYNSFSGLI-PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLA 265 (385)
Q Consensus 209 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (385)
++++|++.+.. ...+..+++|+.|++.+|++.....- ....+..+|+|+.|+-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y---R~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY---RLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH---HHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH---HHHHHHHcChhheeCCE
Confidence 66666664321 23455666777777777766543221 22345666777766644
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=3.1e-11 Score=106.91 Aligned_cols=212 Identities=27% Similarity=0.417 Sum_probs=146.2
Q ss_pred EEecCccccCCCCccccc--ccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 12 LVLNNNLLTGTIPASIFN--LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 12 L~l~~~~~~~~~~~~~~~--~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
|.|++-++. .+|..-.. +.... ..+++.|++. .+|.+++ .+..|+.+.+..|.+. .++..+..+..|.+++++
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~-~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTV-FADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS 129 (722)
T ss_pred cccccchhh-cCCCccccccccchh-hhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence 445555554 45544333 22223 5788888888 8888887 6788888888888776 666678888888888888
Q ss_pred cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 169 (385)
.|++. ..|..++.++ |+.|.+.+|+++ .+|..++..+.|.+|+.+.|.+. .++..+..+.+|+.+.+..|.+.. +
T Consensus 130 ~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-l 204 (722)
T KOG0532|consen 130 SNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-L 204 (722)
T ss_pred cchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-C
Confidence 88877 7777776654 677778888777 77888888888888888888876 455567778888888888877663 3
Q ss_pred CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccc--cCCCCccEEEecCC
Q 043347 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL--GQLRNLERLGLQSN 237 (385)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 237 (385)
|.. +. .-.|..|+++.|++. .++..|.+++.|++|.+.+|.+..-.++.. +...-.|.|++.-|
T Consensus 205 p~E--l~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 205 PEE--LC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CHH--Hh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 322 22 223667788888777 567777888888888888887753322211 33444566666655
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=5.5e-10 Score=91.58 Aligned_cols=224 Identities=21% Similarity=0.207 Sum_probs=134.5
Q ss_pred CcccccEEEeeccc--c------cCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcc
Q 043347 103 NSTKLKLLYLSFNN--L------IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKK 174 (385)
Q Consensus 103 ~l~~L~~L~l~~~~--~------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 174 (385)
-+..|.+|..++.. + ...+|..+.-+.+|+.+.++.|.-..+ ..-...-+.|+++.+....+... +.
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~-~~--- 254 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDV-PS--- 254 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccc-cc---
Confidence 35667777776542 1 112333444567777777777654322 11122446777777765443311 10
Q ss_pred cCCCCCCceEEccc-cccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhh
Q 043347 175 LIGLPNLEGLILGL-NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL 253 (385)
Q Consensus 175 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 253 (385)
+-....+....... ....+.........+.|+++++++|.++. ..+...-.|.++.|+++.|.+..+ +.+
T Consensus 255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--------~nL 325 (490)
T KOG1259|consen 255 LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--------QNL 325 (490)
T ss_pred ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--------hhh
Confidence 10111111111000 00111112222334678889999998874 355666778999999999988764 457
Q ss_pred hcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCC
Q 043347 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKL 332 (385)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 332 (385)
+.+++|..|++++|.++. ...|-..+ .+++.|.++.|.+.+ ...++.+.+|..|++++|++... -...++++|.|
T Consensus 326 a~L~~L~~LDLS~N~Ls~-~~Gwh~KL-GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLAE-CVGWHLKL-GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred hhcccceEeecccchhHh-hhhhHhhh-cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 888899999999987663 22233333 688888888887742 33466777888899998888632 22366788888
Q ss_pred CeEeccCCcccC
Q 043347 333 QGLDLQNNKFEG 344 (385)
Q Consensus 333 ~~L~l~~~~~~~ 344 (385)
+.+.+.+|.+..
T Consensus 402 E~l~L~~NPl~~ 413 (490)
T KOG1259|consen 402 ETLRLTGNPLAG 413 (490)
T ss_pred HHHhhcCCCccc
Confidence 888888888873
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1e-09 Score=70.30 Aligned_cols=61 Identities=33% Similarity=0.467 Sum_probs=37.5
Q ss_pred CCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcc
Q 043347 306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366 (385)
Q Consensus 306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 366 (385)
|+|+.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666644445566666666666666666655555666666666666666653
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=3e-09 Score=96.58 Aligned_cols=176 Identities=33% Similarity=0.444 Sum_probs=73.0
Q ss_pred CCCcEEecccccccccCCCCccCcc-cccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEE
Q 043347 81 KELSRVSLSFNQFTGRIPRDLGNST-KLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS 159 (385)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 159 (385)
+.++.|++.++.+. .++.....+. +|+.|++.+|.+. .++..+..+++|+.|++++|++.+. +......+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhhee
Confidence 44444444444444 2333333332 4444444444443 2223344444444444444444321 22122344444444
Q ss_pred ccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347 160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239 (385)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 239 (385)
+++|.+.. +|.. ......|+++.++.+... .....+....++..+.+.+|++... +..++.+++++.|++++|.+
T Consensus 193 ls~N~i~~-l~~~--~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 193 LSGNKISD-LPPE--IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred ccCCcccc-Cchh--hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccccc
Confidence 44444432 1111 012223444444444221 1222333344444444444444321 23344445555555555555
Q ss_pred cccchhhhhhhHhhhcccCceEEEccCCCCCCC
Q 043347 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGV 272 (385)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (385)
.... .+....+++.|+++++.+...
T Consensus 268 ~~i~--------~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 268 SSIS--------SLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccc--------cccccCccCEEeccCcccccc
Confidence 4431 144445555555555554433
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.87 E-value=6.5e-09 Score=98.95 Aligned_cols=91 Identities=33% Similarity=0.615 Sum_probs=54.3
Q ss_pred eeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccC
Q 043347 284 VEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNR 363 (385)
Q Consensus 284 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (385)
++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55556666666555555555566666666666666555555555666666666666666655565565666666666666
Q ss_pred CcccccCCCcc
Q 043347 364 NKLSGSIPSCL 374 (385)
Q Consensus 364 ~~~~~~~~~~~ 374 (385)
|++++.+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 66655555544
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=3.2e-09 Score=96.37 Aligned_cols=194 Identities=35% Similarity=0.453 Sum_probs=140.2
Q ss_pred eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC-CCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK-ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
+....+.+. .-...+. ..+.++.+++.++.+. .++....... +|+.|+++++.+. ..+..+..++.|+.|++.+|
T Consensus 98 l~~~~~~~~-~~~~~~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 98 LDLNLNRLR-SNISELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeccccccc-cCchhhh-cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 666666663 2222222 4577899999888887 4555555664 8999999999887 56667888999999999999
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
++. .++...+..+.|+.|+++++.+. .++..+.....|+++.+++|....... .+..+.++..+.+..+.+.. .
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceeee-c
Confidence 887 55665557889999999999887 344444566678999998885332211 14566777777777776652 2
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 242 (385)
...++.++.+++|++++|.++.... ++...+++.++++++.+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 5667778889999999998886543 78889999999999877654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.87 E-value=4.6e-09 Score=99.96 Aligned_cols=113 Identities=28% Similarity=0.511 Sum_probs=101.5
Q ss_pred CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEec
Q 043347 258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDL 337 (385)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 337 (385)
.++.|++++|.+.+..|..+..+ ++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 37889999999999999888887 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCChhhhhc-CCCccEEEccCCcccccCC
Q 043347 338 QNNKFEGPIPHEFCH-FSRLYKFYLNRNKLSGSIP 371 (385)
Q Consensus 338 ~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~ 371 (385)
++|.+++..|..+.. ..++..+++.+|+..+..|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999998876 4577889999987554444
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=8.7e-11 Score=104.14 Aligned_cols=175 Identities=31% Similarity=0.415 Sum_probs=132.6
Q ss_pred CCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcc
Q 043347 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC 256 (385)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 256 (385)
.+..-...+++.|++. ..+..+..+-.|+.+.+..|-+. ..+..++.+..|+.++++.|.+...+. .++.+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~-------~lC~l 143 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPD-------GLCDL 143 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCCh-------hhhcC
Confidence 4444556677778776 45555566677888888877776 356677888889999999888877544 33333
Q ss_pred cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347 257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336 (385)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 336 (385)
-|+.|-+++|+++ ..|+.+. ....+..|+.+.|++. ..|..++.+.+|+.|.++.|.+. .+|+.+..+ .|.+||
T Consensus 144 -pLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lD 217 (722)
T KOG0532|consen 144 -PLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLD 217 (722)
T ss_pred -cceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeee
Confidence 4788888888887 4566666 4478888999998887 46666788889999999988887 566666644 488899
Q ss_pred ccCCcccCCChhhhhcCCCccEEEccCCccc
Q 043347 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 367 (385)
++.|++. .+|..|.++..|++|-+++|++.
T Consensus 218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 9999998 88888999999999999999885
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=8.2e-09 Score=66.11 Aligned_cols=54 Identities=37% Similarity=0.490 Sum_probs=22.0
Q ss_pred eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccc
Q 043347 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFN 91 (385)
Q Consensus 37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 91 (385)
|++++|+++ .+|.++|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 6 L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 6 LDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp EEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred EECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 444444444 334444434444444444444443333333444444444444433
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.5e-10 Score=94.64 Aligned_cols=179 Identities=18% Similarity=0.138 Sum_probs=124.5
Q ss_pred CCceEEccccccCC-CCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCc-ccccchhhhhhhHhhhccc
Q 043347 180 NLEGLILGLNNFSG-SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY-LTSSTSELMSLFSALVNCK 257 (385)
Q Consensus 180 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~ 257 (385)
.|++++++...++. .....+..|++|+.|.+.++.+.+.....+....+|+.++++.+. +++.. ....+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-----~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-----LQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-----HHHHHHhhh
Confidence 47888888776652 234567888899999999988887766777788899999998763 33321 234577889
Q ss_pred CceEEEccCCCCCCC-CCCcccccccceeEEEeeccccCC--C-CCccccCCCCccEEECcCccc-cCCCccccccCCCC
Q 043347 258 SLKVIVLAENPVDGV-LPSSIGNLSVSVEEIYMYKCNIHG--R-IPKEIGNLINLTKLSLGYNNL-SGSLPITLGRLKKL 332 (385)
Q Consensus 258 ~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~--~-~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L 332 (385)
.|..|++++|..... ....+....++++.|+++++.-.- . .......+|+|.+|++++|.. +......+..++-|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 999999998866433 222344555788899998884321 1 112235689999999998754 33334455678889
Q ss_pred CeEeccCCcccCCChhhh---hcCCCccEEEccCCc
Q 043347 333 QGLDLQNNKFEGPIPHEF---CHFSRLYKFYLNRNK 365 (385)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 365 (385)
++|.++.|+.. .|..+ ...|+|..|++-+|-
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 99999999764 45543 347899999998873
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.7e-10 Score=94.31 Aligned_cols=160 Identities=18% Similarity=0.099 Sum_probs=102.3
Q ss_pred ccccEEEeecccccCC-CCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCce
Q 043347 105 TKLKLLYLSFNNLIGE-IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183 (385)
Q Consensus 105 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~ 183 (385)
..|++++++...++.. +...++.|.+|+.+.+.+.++.+.....++.-..|+.++++.+.-.........+.++..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588888877655422 222356788888888888888777777777778888888887653222111223667888888
Q ss_pred EEccccccCCCC-Cccccc-CCcccEEEccCccc---cccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccC
Q 043347 184 LILGLNNFSGSI-PSFFFN-ASKLYYLELAYNSF---SGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKS 258 (385)
Q Consensus 184 L~l~~~~~~~~~-~~~~~~-~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (385)
|+++||...... ...+.+ -++++.|+++|+.- ..........+|++.+|++++|..-..+ .++.+..++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-----~~~~~~kf~~ 339 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-----CFQEFFKFNY 339 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-----HHHHHHhcch
Confidence 888888754221 111221 35788888887531 1112223357888888888887533221 5677888888
Q ss_pred ceEEEccCCCC
Q 043347 259 LKVIVLAENPV 269 (385)
Q Consensus 259 L~~L~l~~~~~ 269 (385)
|++|+++.|..
T Consensus 340 L~~lSlsRCY~ 350 (419)
T KOG2120|consen 340 LQHLSLSRCYD 350 (419)
T ss_pred heeeehhhhcC
Confidence 88888887743
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=5.3e-09 Score=85.77 Aligned_cols=183 Identities=20% Similarity=0.131 Sum_probs=88.8
Q ss_pred CCcEEecccccccccCCC-Cc-cCcccccEEEeecccccC--CCCcccCCCcCCcEEEecccccccccCccc-cCCCCCc
Q 043347 82 ELSRVSLSFNQFTGRIPR-DL-GNSTKLKLLYLSFNNLIG--EIPQEIGSLRNLEILRIDQNNLVGFIPDTI-FNMSTLK 156 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~ 156 (385)
.++.+.+.++.+...... .+ ..++.++.+++.+|.+.+ .+...+.++|+|+.|+++.|.+...+. .+ ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceE
Confidence 444455555544422111 11 245677777777776654 233334567777777777776653322 22 3455677
Q ss_pred EEEccCCcccccCCCCcccCCCCCCceEEccccccCCC--CCccccc-CCcccEEEccCcccccc--CcccccCCCCccE
Q 043347 157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS--IPSFFFN-ASKLYYLELAYNSFSGL--IPKALGQLRNLER 231 (385)
Q Consensus 157 ~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~ 231 (385)
++-+.+..+.+...... +..+|.+++++|+.|..... ..+.... .+.+.++++..|..... ....-..+|++..
T Consensus 125 ~lVLNgT~L~w~~~~s~-l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSS-LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEcCCCCChhhhhhh-hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 77777766654333222 55667777777776644311 1111111 23455555554433110 0001122455566
Q ss_pred EEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347 232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG 271 (385)
Q Consensus 232 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (385)
+.+..|.+..... ...+..+|.+..|+++.+.+..
T Consensus 204 v~v~e~PlK~~s~-----ek~se~~p~~~~LnL~~~~ids 238 (418)
T KOG2982|consen 204 VFVCEGPLKTESS-----EKGSEPFPSLSCLNLGANNIDS 238 (418)
T ss_pred eeeecCcccchhh-----cccCCCCCcchhhhhccccccc
Confidence 6666555544322 1233344444455555554443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=3.3e-09 Score=86.91 Aligned_cols=237 Identities=18% Similarity=0.131 Sum_probs=125.4
Q ss_pred CcccccccceeceeEeecCccccCCCh--hhhcCCCcccEEEccCCcccC--cCCCCccCCCCCcEEecccccccccCCC
Q 043347 24 PASIFNLSSISTGLDFSNNSLTGSFPD--DMCEGLPRLKGLYVSYNQFKG--PIPNNLWHCKELSRVSLSFNQFTGRIPR 99 (385)
Q Consensus 24 ~~~~~~~~~l~~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 99 (385)
+..++....+. .+.+.++.|. ...+ .+...++.++.+++.+|.++. .+...+.++|.|+.|+++.|++...+.
T Consensus 38 ~~~v~s~ra~e-llvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~- 114 (418)
T KOG2982|consen 38 YLGVSSLRALE-LLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK- 114 (418)
T ss_pred eeeeccccchh-hheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-
Confidence 33343444343 4556666665 3322 233457788899998888762 344456788899999998887763222
Q ss_pred Cc-cCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccc--cCccccCC-CCCcEEEccCCcccccCCCCcc
Q 043347 100 DL-GNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGF--IPDTIFNM-STLKTLSLLNNTLSGNLPSSKK 174 (385)
Q Consensus 100 ~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~ 174 (385)
.+ ....+|++|-+.|+.+.= .....+..+|.++.|+++.|.+... ..+.+... +.+.++....|...........
T Consensus 115 ~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 115 SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence 22 356788888888876532 2233355778888888887744322 12223322 2555665555543211100000
Q ss_pred cCCCCCCceEEccccccCCC-CCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecCCcccccchhhhhhhHh
Q 043347 175 LIGLPNLEGLILGLNNFSGS-IPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA 252 (385)
Q Consensus 175 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 252 (385)
-.-+|++..+-+..+.+.+. ....+...+.+.-|+++.+++... ..+.+.+++.|..|.++++++.+-........-.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll 274 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL 274 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence 12345555555555544321 122334445555566665555322 2345556666666666666554432222222233
Q ss_pred hhcccCceEEE
Q 043347 253 LVNCKSLKVIV 263 (385)
Q Consensus 253 ~~~~~~L~~L~ 263 (385)
++.+++++.|+
T Consensus 275 IaRL~~v~vLN 285 (418)
T KOG2982|consen 275 IARLTKVQVLN 285 (418)
T ss_pred EeeccceEEec
Confidence 45555555554
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=4e-10 Score=96.35 Aligned_cols=85 Identities=18% Similarity=0.032 Sum_probs=36.8
Q ss_pred cccEEEeecccccC-CCCc-ccCCCcCCcEEEeccccc-ccccCccc-cCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347 106 KLKLLYLSFNNLIG-EIPQ-EIGSLRNLEILRIDQNNL-VGFIPDTI-FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181 (385)
Q Consensus 106 ~L~~L~l~~~~~~~-~~~~-~~~~l~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L 181 (385)
.|+.|.+.|+.-.. .... .-.+++++++|.+.+|.. ++..-..+ ..+++|+.+++..|..............+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666553211 1111 123566666666655542 21111111 24556666665553322111111113355666
Q ss_pred ceEEccccc
Q 043347 182 EGLILGLNN 190 (385)
Q Consensus 182 ~~L~l~~~~ 190 (385)
++++++|+.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666654
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=6.6e-09 Score=94.54 Aligned_cols=242 Identities=23% Similarity=0.230 Sum_probs=115.8
Q ss_pred CCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEE
Q 043347 79 HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTL 158 (385)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 158 (385)
.+..++.+.+..+.+. .....+..+.+|+.+++.+|.+... ...+..+++|+.|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 4445555555555554 2233455666666777766666522 22255566777777776666543 334555556667
Q ss_pred EccCCcccccCCCCcccCCCCCCceEEccccccCCCCC-cccccCCcccEEEccCccccccCcccccCCCCccEEEecCC
Q 043347 159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237 (385)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (385)
++.+|.+... ..+..+..|+.++++.+.+..... . ...+.+++.+.+.+|.+... ..+.....+..+++..|
T Consensus 146 ~l~~N~i~~~----~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 146 NLSGNLISDI----SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred eeccCcchhc----cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 7766666532 113346666666666666553322 1 34555666666666655432 22223333444455555
Q ss_pred cccccchhhhhhhHhhhccc--CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcC
Q 043347 238 YLTSSTSELMSLFSALVNCK--SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGY 315 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 315 (385)
.+..... +.... +|+.+++.++++.... ..+... ..+..+++.++++.... .+...+.+..+....
T Consensus 219 ~i~~~~~--------l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~-~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 219 KISKLEG--------LNELVMLHLRELYLSGNRISRSP-EGLENL-KNLPVLDLSSNRISNLE--GLERLPKLSELWLND 286 (414)
T ss_pred cceeccC--------cccchhHHHHHHhcccCcccccc-cccccc-ccccccchhhccccccc--cccccchHHHhccCc
Confidence 5443221 11112 2555566655554211 111111 34445555554443211 122333444455554
Q ss_pred ccccCC---Ccc-ccccCCCCCeEeccCCccc
Q 043347 316 NNLSGS---LPI-TLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 316 ~~~~~~---~~~-~~~~~~~L~~L~l~~~~~~ 343 (385)
+.+... ... .....+.+....+.++.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred chhcchhhhhccccccccccccccccccCccc
Confidence 444311 111 1233445555555555444
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=1.2e-08 Score=92.91 Aligned_cols=196 Identities=28% Similarity=0.275 Sum_probs=102.7
Q ss_pred ccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccE
Q 043347 30 LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKL 109 (385)
Q Consensus 30 ~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 109 (385)
+..+. .++++.+.+. .+.... ..+.+|+.+++.+|.+.+. ...+..+++|++|++++|.+... ..+..++.|+.
T Consensus 71 l~~l~-~l~l~~n~i~-~~~~~l-~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLK-ELNLRQNLIA-KILNHL-SKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred hHhHH-hhccchhhhh-hhhccc-ccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 33444 3556666555 322212 2566777777777766522 22256677777777777776633 45555666777
Q ss_pred EEeecccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccc
Q 043347 110 LYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL 188 (385)
Q Consensus 110 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (385)
|++.+|.+.+. ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+..... +.....+..+++..
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~----~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG----LDLLKKLVLLSLLD 217 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc----hHHHHHHHHhhccc
Confidence 77777766522 334456677777777776654422 1 3556666666666666542211 22223333334444
Q ss_pred cccCCCCCcccccCC--cccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347 189 NNFSGSIPSFFFNAS--KLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 189 ~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
+.+..... +.... +|+.+.+.+|.+... +..+..++.+..+++..+.+..
T Consensus 218 n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 218 NKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccc
Confidence 44432111 11111 256666666655432 1334455566666666655443
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=1.3e-08 Score=82.41 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCcccEEEccCccccccCc----ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc
Q 043347 202 ASKLYYLELAYNSFSGLIP----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI 277 (385)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (385)
-|.|+++....|.+..... ..+..-.+|+.+.+..|.+...+..... +..+..+.+|+.|++.+|.++......+
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~-~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLA-FLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHH-HHHHHHhCcceeeeccccchhhhhHHHH
Confidence 4567777776666532211 2233346788888888877654333222 3455667788888888887664332221
Q ss_pred ----cccccceeEEEeeccccCCCCCcc----c--cCCCCccEEECcCccccCCCccc-----c--ccCCCCCeEeccCC
Q 043347 278 ----GNLSVSVEEIYMYKCNIHGRIPKE----I--GNLINLTKLSLGYNNLSGSLPIT-----L--GRLKKLQGLDLQNN 340 (385)
Q Consensus 278 ----~~~~~~l~~L~l~~~~~~~~~~~~----~--~~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~l~~~ 340 (385)
..+ +.+++|.+.+|-++...... | ...|+|..|...+|...+..-.. + ..+|-|..|.++||
T Consensus 235 a~al~~W-~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 235 ADALCEW-NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHhccc-chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 222 34566666666554322211 1 12356666666666544221111 1 22444555555556
Q ss_pred ccc
Q 043347 341 KFE 343 (385)
Q Consensus 341 ~~~ 343 (385)
++.
T Consensus 314 r~~ 316 (388)
T COG5238 314 RIK 316 (388)
T ss_pred cch
Confidence 554
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=6.5e-09 Score=89.09 Aligned_cols=280 Identities=18% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCcEEecccccccccCC--CCccCcccccEEEeeccccc-CCCCccc-CCCcCCcEEEecccc-cccccCc-cccCCCCC
Q 043347 82 ELSRVSLSFNQFTGRIP--RDLGNSTKLKLLYLSFNNLI-GEIPQEI-GSLRNLEILRIDQNN-LVGFIPD-TIFNMSTL 155 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~L 155 (385)
.|+.|.+.++.-.+.-+ ....+++++++|.+.++... +..-..+ ..|++|+++++..|. +++..-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666666664332111 22345777777777776422 1111112 256777777776643 3322222 23367777
Q ss_pred cEEEccCCcccccCCCCcccCCCCCCceEEccccccCC--CCCcccccCCcccEEEccCcc-ccccC-cccccCCCCccE
Q 043347 156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG--SIPSFFFNASKLYYLELAYNS-FSGLI-PKALGQLRNLER 231 (385)
Q Consensus 156 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~ 231 (385)
+++++++|.-.....-.....++..++.+...+|.-.. .+...-..+.-+.++++..|. +++.. -..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 77777776532211111123344445555444432110 001111223445555554543 22221 122244566777
Q ss_pred EEecCCcccccchhhhhhhHhhhcccCceEEEccCCC-CCCCCCCcccccccceeEEEeeccccCCC--CCccccCCCCc
Q 043347 232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP-VDGVLPSSIGNLSVSVEEIYMYKCNIHGR--IPKEIGNLINL 308 (385)
Q Consensus 232 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~~~~L 308 (385)
++.+++.- .++.. +...-.++++|+.+.+++|. +++.....+....+.|+.+++.+|..... +...-.+++.|
T Consensus 299 l~~s~~t~--~~d~~--l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 299 LCYSSCTD--ITDEV--LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hcccCCCC--CchHH--HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 77766532 22211 11233456777777777764 33333334444446666666666644321 22222456677
Q ss_pred cEEECcCcccc-CC----CccccccCCCCCeEeccCCcc-cCCChhhhhcCCCccEEEccCCc
Q 043347 309 TKLSLGYNNLS-GS----LPITLGRLKKLQGLDLQNNKF-EGPIPHEFCHFSRLYKFYLNRNK 365 (385)
Q Consensus 309 ~~L~l~~~~~~-~~----~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 365 (385)
+.+.++.|... ++ +..+-.+...++.+.++++.. ++...+.+..+++|+.+++-+|+
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 77777766432 11 011112344566666766643 33344445556677777776663
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=1.3e-07 Score=68.71 Aligned_cols=135 Identities=22% Similarity=0.228 Sum_probs=94.0
Q ss_pred CccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCC
Q 043347 228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLIN 307 (385)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 307 (385)
.+..++++.|.+....+ .+..+.....|+..++++|.+. .+|+.+...++.++.+++++|+++ ..|..++.+|.
T Consensus 28 E~h~ldLssc~lm~i~d----avy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIAD----AVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHH----HHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence 34566777776654443 3344566677888888888877 455556655578889999999998 57777999999
Q ss_pred ccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347 308 LTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI 370 (385)
Q Consensus 308 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 370 (385)
|+.|+++.|.+. ..|+.+..+.++-.|+..+|... .++..+-........++.++++.+.-
T Consensus 102 Lr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 102 LRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred hhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccC
Confidence 999999999998 67777777888888998888877 44433333333333444555665443
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=1.3e-06 Score=71.17 Aligned_cols=141 Identities=20% Similarity=0.126 Sum_probs=79.0
Q ss_pred CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccc----ccccceeEEEeeccccCCCC--
Q 043347 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG----NLSVSVEEIYMYKCNIHGRI-- 298 (385)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~l~~~~~~~~~-- 298 (385)
.-|.|+.+....|++.......++ ..+.....|+.+.+..|.+.......+. .++.+++.|++.+|.++...
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a--~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSA--ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHH--HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 447788888888877776655544 3455557788888888776543222221 22367777777777665322
Q ss_pred --CccccCCCCccEEECcCccccCCCcccc------ccCCCCCeEeccCCcccCCC-----hhhhh--cCCCccEEEccC
Q 043347 299 --PKEIGNLINLTKLSLGYNNLSGSLPITL------GRLKKLQGLDLQNNKFEGPI-----PHEFC--HFSRLYKFYLNR 363 (385)
Q Consensus 299 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~-----~~~~~--~~~~L~~L~l~~ 363 (385)
..+++.-+.|++|.+.+|-++..-...+ ...|+|+.|...+|.+.+.. ...+. ++|-|..|.+.|
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 1222333456777777776653322211 12466777777766544311 11222 266666677777
Q ss_pred Cccc
Q 043347 364 NKLS 367 (385)
Q Consensus 364 ~~~~ 367 (385)
|.+.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 7664
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=4.4e-08 Score=89.91 Aligned_cols=178 Identities=19% Similarity=0.152 Sum_probs=105.2
Q ss_pred cCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc--ccccc-------CcccccCCCCccEEEecCCcccccchh
Q 043347 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN--SFSGL-------IPKALGQLRNLERLGLQSNYLTSSTSE 245 (385)
Q Consensus 175 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~ 245 (385)
+..+..|+.|.+.++++.. ......--..|++|.-.+. .+.+. ....+ ..-.|...+.+.|.+...+
T Consensus 105 ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~~mD-- 180 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLVLMD-- 180 (1096)
T ss_pred eccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHHhHH--
Confidence 4467788888888887653 1111111123333322211 01100 01111 1123556666667665432
Q ss_pred hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccc
Q 043347 246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPIT 325 (385)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 325 (385)
..+.-++.++.|+++.|++.... .+..+ +.|+.|+++.|.+.....-...++. |..|.+++|.++. ...
T Consensus 181 -----~SLqll~ale~LnLshNk~~~v~--~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~g 249 (1096)
T KOG1859|consen 181 -----ESLQLLPALESLNLSHNKFTKVD--NLRRL-PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRG 249 (1096)
T ss_pred -----HHHHHHHHhhhhccchhhhhhhH--HHHhc-ccccccccccchhccccccchhhhh-heeeeecccHHHh--hhh
Confidence 35666678888888888876443 34444 7888888888887643333334454 8888888888762 335
Q ss_pred cccCCCCCeEeccCCcccC-CChhhhhcCCCccEEEccCCccc
Q 043347 326 LGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 326 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 367 (385)
+.++.+|+.||+++|-+.+ .....+..+..|..|.+.||++.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6778888888888886654 22223344677888888888875
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=1.1e-07 Score=87.40 Aligned_cols=128 Identities=27% Similarity=0.354 Sum_probs=76.1
Q ss_pred CCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEE
Q 043347 130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLE 209 (385)
Q Consensus 130 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 209 (385)
.|...+.+.|.++ .....+.-++.++.|++++|++.... .+..++.|++|+++.|.++......-..| +|..|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 4555555555554 33445556677777777777776432 25677777777777777664333222333 377777
Q ss_pred ccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347 210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270 (385)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (385)
+++|.++.. ..+.++.+|+.|++++|-+.+-.. ...+..+..|+.|.+.||++.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-----L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-----LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-----hhHHHHHHHHHHHhhcCCccc
Confidence 777776643 234567777777777775543211 223444556677777777664
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.8e-06 Score=48.37 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=22.5
Q ss_pred CCCCeEeccCCcccCCChhhhhcCCCccEEEccCCccc
Q 043347 330 KKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 367 (385)
++|++|++++|+++ .++..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666667777666 34445666777777777777665
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.95 E-value=3.2e-05 Score=58.08 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=27.5
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (385)
|.+|++|+.+.+.. .+...-..++..+..+. .+++.++ +. .++..+|..++.++.+.+.+ .+.......|..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~-~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLK-SINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-S-EEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccc-ccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 44455555555443 22211112223333444 3444442 33 44444444444455544433 222222334444444
Q ss_pred CcEEecc
Q 043347 83 LSRVSLS 89 (385)
Q Consensus 83 L~~L~l~ 89 (385)
++.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=2.8e-06 Score=81.14 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=83.4
Q ss_pred CcccEEEccCcccc-ccCc-ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc
Q 043347 203 SKLYYLELAYNSFS-GLIP-KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL 280 (385)
Q Consensus 203 ~~L~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 280 (385)
.+|++|+++|...- ..-+ ..-..+|+|+.|.+.+-.+.... +.+...++|+|..|+++++.++.. ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-----F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-----FSQLCASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-----HHHHhhccCccceeecCCCCccCc--HHHhcc
Confidence 46788888774321 1111 11235688888888876554322 456677788888888888777644 223333
Q ss_pred ccceeEEEeeccccCC-CCCccccCCCCccEEECcCccccCCC------ccccccCCCCCeEeccCCcccCCChhhhhc-
Q 043347 281 SVSVEEIYMYKCNIHG-RIPKEIGNLINLTKLSLGYNNLSGSL------PITLGRLKKLQGLDLQNNKFEGPIPHEFCH- 352 (385)
Q Consensus 281 ~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~- 352 (385)
.+|+.|.+.+-.+.. .....+-.+++|+.||+|........ .++-..+|.|+.||.+++.+.+...+.+..
T Consensus 195 -knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 195 -KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred -ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 556666565555442 11122345667777777765433211 112233566777776666665544444332
Q ss_pred CCCccEEEccC
Q 043347 353 FSRLYKFYLNR 363 (385)
Q Consensus 353 ~~~L~~L~l~~ 363 (385)
=|+|+.+..-+
T Consensus 274 H~~L~~i~~~~ 284 (699)
T KOG3665|consen 274 HPNLQQIAALD 284 (699)
T ss_pred CccHhhhhhhh
Confidence 34555554443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=1.6e-06 Score=82.80 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=32.7
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccc-cCCCCccCcccccEEEeec
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSF 114 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 114 (385)
+|.+.+-.+...--..++.++|+|..|||++++++.. ..+..+++|++|.+.+-.+.. .....+..+++|++||++.
T Consensus 152 sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 152 SLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred eEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 4555544333121223444455555555555544422 334444555554444433321 1112333455555555544
Q ss_pred c
Q 043347 115 N 115 (385)
Q Consensus 115 ~ 115 (385)
.
T Consensus 230 ~ 230 (699)
T KOG3665|consen 230 D 230 (699)
T ss_pred c
Confidence 3
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=7.9e-05 Score=65.94 Aligned_cols=138 Identities=13% Similarity=0.142 Sum_probs=69.7
Q ss_pred cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc-cccccCcccccCCCC
Q 043347 150 FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN-SFSGLIPKALGQLRN 228 (385)
Q Consensus 150 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 228 (385)
..+..++.|++++|.+. .+|. -..+|++|.+++|......++.+ .++|++|.+++| .+. .. +++
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------ccc
Confidence 34677888888877554 3331 12357777777654333334333 256777777776 332 11 245
Q ss_pred ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL 308 (385)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L 308 (385)
|+.|+++++....... + .++|+.|.+.++...... ..-..++++|+.|.+.+|... ..|..+. .+|
T Consensus 114 Le~L~L~~n~~~~L~~----L------PssLk~L~I~~~n~~~~~-~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SL 179 (426)
T PRK15386 114 VRSLEIKGSATDSIKN----V------PNGLTSLSINSYNPENQA-RIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESL 179 (426)
T ss_pred cceEEeCCCCCccccc----C------cchHhheecccccccccc-ccccccCCcccEEEecCCCcc-cCccccc--ccC
Confidence 6667766544322110 1 124555665432211000 000124467777777777654 2333232 367
Q ss_pred cEEECcCc
Q 043347 309 TKLSLGYN 316 (385)
Q Consensus 309 ~~L~l~~~ 316 (385)
+.|+++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 77777654
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=6.2e-05 Score=56.48 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=44.4
Q ss_pred CChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCC
Q 043347 48 FPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGS 127 (385)
Q Consensus 48 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 127 (385)
++..+|..+++|+.+.+.. .+......+|..+++|+.+.+..+ +.......+.+++.++.+.+.. .+.......|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4455555666666666653 344444555666666666666553 3323334455555566666643 222223334445
Q ss_pred CcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347 128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL 161 (385)
Q Consensus 128 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 161 (385)
+++++.+.+..+ +.......+.++ +++.+.+.
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 556666555433 333333344444 55555443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.9e-05 Score=46.19 Aligned_cols=37 Identities=38% Similarity=0.583 Sum_probs=25.2
Q ss_pred CCccEEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347 306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (385)
++|++|++++|.++ .++..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46777777777777 45555777777777777777776
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.2e-05 Score=60.38 Aligned_cols=82 Identities=20% Similarity=0.117 Sum_probs=40.4
Q ss_pred cceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCCh---hhhhcCCCcc
Q 043347 282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIP---HEFCHFSRLY 357 (385)
Q Consensus 282 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~ 357 (385)
++|..|.+.+|.++...|..-..+|+|..|.+.+|.+... ..+.+..||+|++|.+-+|+++..-- ..+..+|+|+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~ 143 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR 143 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce
Confidence 4555555666655554444334455555666665554421 12234455556666555555542111 1233455555
Q ss_pred EEEccC
Q 043347 358 KFYLNR 363 (385)
Q Consensus 358 ~L~l~~ 363 (385)
.||..+
T Consensus 144 ~LDF~k 149 (233)
T KOG1644|consen 144 TLDFQK 149 (233)
T ss_pred Eeehhh
Confidence 555543
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=6.2e-07 Score=65.19 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=37.5
Q ss_pred cccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEec
Q 043347 58 RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID 137 (385)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 137 (385)
.|+..++++|.++...+..-.+++..+.|++..|.+. ..|..+..++.|+.|++..|++. ..|+.+..+.++-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 3444455555444222222233444555555555544 44444555555555555555444 444444444444444444
Q ss_pred ccc
Q 043347 138 QNN 140 (385)
Q Consensus 138 ~~~ 140 (385)
++.
T Consensus 132 ~na 134 (177)
T KOG4579|consen 132 ENA 134 (177)
T ss_pred CCc
Confidence 443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=6.9e-05 Score=58.61 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccc
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 142 (385)
....+|+++|.+. ....|..++.|..|.+++|+++...|.--..+++|..|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 4445555555554 1234555555555555555555433333333445555555554443
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00017 Score=63.82 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=70.6
Q ss_pred ccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccc
Q 043347 223 LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302 (385)
Q Consensus 223 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 302 (385)
+..+++++.|++++|.+..++. -.++|+.|.+++|.-....|.. ++.+|++|.+.+|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~----------LP~sLtsL~Lsnc~nLtsLP~~---LP~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV----------LPNELTEITIENCNNLTTLPGS---IPEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC----------CCCCCcEEEccCCCCcccCCch---hhhhhhheEccCcccccccc---
Confidence 3446889999999998776531 1246999999886554444543 34689999999984333333
Q ss_pred cCCCCccEEECcCcccc--CCCcccccc------------------CCCCCeEeccCCcccCCChhhhhcCCCccEEEcc
Q 043347 303 GNLINLTKLSLGYNNLS--GSLPITLGR------------------LKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362 (385)
Q Consensus 303 ~~~~~L~~L~l~~~~~~--~~~~~~~~~------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (385)
++|+.|++..+... ..+|..+.. .++|+.|++++|... ..|..+ ..+|+.|+++
T Consensus 112 ---~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls 185 (426)
T PRK15386 112 ---ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLH 185 (426)
T ss_pred ---cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc--cccCcEEEec
Confidence 25666666554321 123322211 135666777666544 333332 2466777766
Q ss_pred CC
Q 043347 363 RN 364 (385)
Q Consensus 363 ~~ 364 (385)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=1.2e-05 Score=75.25 Aligned_cols=225 Identities=19% Similarity=0.088 Sum_probs=111.0
Q ss_pred CCcCCcEEEecccccccc--cCccccCCCCCcEEEccCC-cccccCC--CCcccCCCCCCceEEccccc-cCCCCCcccc
Q 043347 127 SLRNLEILRIDQNNLVGF--IPDTIFNMSTLKTLSLLNN-TLSGNLP--SSKKLIGLPNLEGLILGLNN-FSGSIPSFFF 200 (385)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~-~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 200 (385)
.++.|+.+.+.++.-... .......++.|+.++++++ ......+ .......++.|+.+++..+. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777777776643322 2234456777888887762 1111111 01123455777777777776 4433323332
Q ss_pred -cCCcccEEEccCcc-ccccCc-ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc
Q 043347 201 -NASKLYYLELAYNS-FSGLIP-KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI 277 (385)
Q Consensus 201 -~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (385)
.|++|++|.+.++. +++... .....+++|++|+++++... .+.. +......+++++.+.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~--l~~~~~~c~~l~~l~~~~~~~-------- 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSG--LEALLKNCPNLRELKLLSLNG-------- 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHH--HHHHHHhCcchhhhhhhhcCC--------
Confidence 37778888776665 443322 23356777888888877543 1111 122234466666555443221
Q ss_pred cccccceeEEEeeccccCC---CCCccccCCCCccEEECcCccccCCC-ccccccCCC--------------CCeEeccC
Q 043347 278 GNLSVSVEEIYMYKCNIHG---RIPKEIGNLINLTKLSLGYNNLSGSL-PITLGRLKK--------------LQGLDLQN 339 (385)
Q Consensus 278 ~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~--------------L~~L~l~~ 339 (385)
+..++.+.+.++.... ........++.++++.+..+...... ...+.+|+. ++.|+++.
T Consensus 334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSD 410 (482)
T ss_pred ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEeccc
Confidence 1233333333332211 11122345666666666666533221 123334443 46666666
Q ss_pred Cccc-CCChhhhhc-CCCccEEEccCCcc
Q 043347 340 NKFE-GPIPHEFCH-FSRLYKFYLNRNKL 366 (385)
Q Consensus 340 ~~~~-~~~~~~~~~-~~~L~~L~l~~~~~ 366 (385)
+... ......... +.++..+++.+|..
T Consensus 411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 411 CRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred CccccccchHHHhhhhhccccCCccCccc
Confidence 6432 222222222 55666777777643
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.26 E-value=2.5e-05 Score=73.14 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=24.4
Q ss_pred ccccCCCCCeEeccCCcccCCC-hhhhhcCCC--------------ccEEEccCCcc
Q 043347 325 TLGRLKKLQGLDLQNNKFEGPI-PHEFCHFSR--------------LYKFYLNRNKL 366 (385)
Q Consensus 325 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~--------------L~~L~l~~~~~ 366 (385)
....+++++.+.+.++...+.. ...+.+++. ++.|++..|..
T Consensus 357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~ 413 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRL 413 (482)
T ss_pred HHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcc
Confidence 3456778877777776644333 123334444 47777777753
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=9.6e-05 Score=60.26 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=32.7
Q ss_pred ccCCCCccEEECcCc--cccCCCccccccCCCCCeEeccCCcccC-CChhhhhcCCCccEEEccCCccc
Q 043347 302 IGNLINLTKLSLGYN--NLSGSLPITLGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 302 ~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 367 (385)
+..+|+|+.|.++.| .+.+.+......+|+|+++++++|++.. .-...+..+++|..|++.+|..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 344555666666655 4443444444445666666666665542 01111233555556666655544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.1e-05 Score=66.17 Aligned_cols=101 Identities=28% Similarity=0.344 Sum_probs=76.7
Q ss_pred cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCC-CCccCcccc
Q 043347 29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP-RDLGNSTKL 107 (385)
Q Consensus 29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L 107 (385)
.+.+.+ -|+++++.++| ..++..|+.|++|.++-|.++. ...+..|++|+.|.+..|.|.+... ..+.++|+|
T Consensus 17 dl~~vk-KLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVK-KLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhh-hhcccCCCccH---HHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 344556 49999999883 2567789999999999998862 3357889999999999998874322 246789999
Q ss_pred cEEEeecccccCCCCcc-----cCCCcCCcEEE
Q 043347 108 KLLYLSFNNLIGEIPQE-----IGSLRNLEILR 135 (385)
Q Consensus 108 ~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~ 135 (385)
+.|.|..|+..+..+.. +..+|+|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998876555443 45678888775
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=3e-05 Score=63.60 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=31.8
Q ss_pred CcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347 203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270 (385)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (385)
.+++.|+..+|.+.++ .....++.|+.|.++-|.++.+ ..+..|++|+.|++..|.+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--------~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--------APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--------hhHHHHHHHHHHHHHhcccc
Confidence 3455555555555533 2344566666666666665543 34555666666666655544
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00013 Score=57.19 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=53.8
Q ss_pred ceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCC-cccc-ccCCCCCeEeccCC-cccCCChhhhhcCCCccEE
Q 043347 283 SVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL-PITL-GRLKKLQGLDLQNN-KFEGPIPHEFCHFSRLYKF 359 (385)
Q Consensus 283 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 359 (385)
.++.++-+++.+-.+.-.-+.+++.++.|.+.+|.-.+.. .+-+ .-.++|+.|++++| ++++.....+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 5677777777665555555667777777777777543221 1111 23467888888877 6776666677778888887
Q ss_pred EccCCc
Q 043347 360 YLNRNK 365 (385)
Q Consensus 360 ~l~~~~ 365 (385)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 777654
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.00073 Score=55.27 Aligned_cols=61 Identities=25% Similarity=0.213 Sum_probs=29.3
Q ss_pred CCcccEEEccCCcccCcCCCCccCCCCCcEEecccc--cccccCCCCccCcccccEEEeeccccc
Q 043347 56 LPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFN--QFTGRIPRDLGNSTKLKLLYLSFNNLI 118 (385)
Q Consensus 56 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (385)
...|+.+++.+..++ ....|..+++|+.|.++.| ++...++.....+++|+++++++|++.
T Consensus 42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334444444444433 1224455556666666655 333333333344466666666655544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0027 Score=30.74 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=14.8
Q ss_pred CccEEEccCCcccccCCCccccc
Q 043347 355 RLYKFYLNRNKLSGSIPSCLGDL 377 (385)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~l 377 (385)
+|++|++++|+++ .+|..|.+|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4678888888877 566556543
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.0025 Score=50.19 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=49.0
Q ss_pred CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCC-ccc-cCCCCccEEECcCc-cccCCCccccccCCCCCe
Q 043347 258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP-KEI-GNLINLTKLSLGYN-NLSGSLPITLGRLKKLQG 334 (385)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 334 (385)
.++.++-+++.+..+.-+.+..+ .+++.|.+.+|+..+..- .-+ +-.++|++|++++| .|++.-..++..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45556666666665555566555 667777777776543211 111 12457777777766 455555556666777777
Q ss_pred EeccCCcc
Q 043347 335 LDLQNNKF 342 (385)
Q Consensus 335 L~l~~~~~ 342 (385)
|.+.+-..
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 77666533
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.19 E-value=0.024 Score=27.30 Aligned_cols=18 Identities=56% Similarity=0.696 Sum_probs=10.4
Q ss_pred ccEEEecCccccCCCCccc
Q 043347 9 LEVLVLNNNLLTGTIPASI 27 (385)
Q Consensus 9 l~~L~l~~~~~~~~~~~~~ 27 (385)
|++|++++|.++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 556666666665 555543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.89 E-value=0.041 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=6.9
Q ss_pred CCccEEEccCCccc
Q 043347 354 SRLYKFYLNRNKLS 367 (385)
Q Consensus 354 ~~L~~L~l~~~~~~ 367 (385)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.99 E-value=0.00048 Score=63.28 Aligned_cols=114 Identities=29% Similarity=0.207 Sum_probs=57.3
Q ss_pred CcEEEccCCcccccCCC--CcccCCCCCCceEEccccccCCCCC----cccccC-CcccEEEccCccccccC----cccc
Q 043347 155 LKTLSLLNNTLSGNLPS--SKKLIGLPNLEGLILGLNNFSGSIP----SFFFNA-SKLYYLELAYNSFSGLI----PKAL 223 (385)
Q Consensus 155 L~~l~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~----~~~~ 223 (385)
+..+.+.+|.+...-.. ...+...+.|..|+++++.+.+... ..+... ..++.|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56666666665432100 1124556677777777777652211 122222 34555666666554332 2344
Q ss_pred cCCCCccEEEecCCcccccchhhhhhhHhhh----cccCceEEEccCCCCC
Q 043347 224 GQLRNLERLGLQSNYLTSSTSELMSLFSALV----NCKSLKVIVLAENPVD 270 (385)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~ 270 (385)
.....++.++++.|.+..... ....+++. ...++++|.+.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~--~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGL--LVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhh--HHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 456677777777776653222 11223333 3455666666655544
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.32 E-value=0.031 Score=27.56 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.0
Q ss_pred CccEEEccCCccc
Q 043347 355 RLYKFYLNRNKLS 367 (385)
Q Consensus 355 ~L~~L~l~~~~~~ 367 (385)
+|+.|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.25 E-value=0.0015 Score=60.07 Aligned_cols=187 Identities=22% Similarity=0.235 Sum_probs=118.2
Q ss_pred CceEEccccccCCC----CCcccccCCcccEEEccCccccccCcc----cccCC-CCccEEEecCCcccccchhhhhhhH
Q 043347 181 LEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFSGLIPK----ALGQL-RNLERLGLQSNYLTSSTSELMSLFS 251 (385)
Q Consensus 181 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 251 (385)
+..+.+.+|.+.+. ....+...+.+..+++++|.+.+.... .+... ..++.|.+..|.++..... ++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HHHH
Confidence 66777777776633 233456678888999999887644332 22232 4567788888877665432 2446
Q ss_pred hhhcccCceEEEccCCCCCCC----CCCcccc---cccceeEEEeeccccCCC----CCccccCCCC-ccEEECcCcccc
Q 043347 252 ALVNCKSLKVIVLAENPVDGV----LPSSIGN---LSVSVEEIYMYKCNIHGR----IPKEIGNLIN-LTKLSLGYNNLS 319 (385)
Q Consensus 252 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~---~~~~l~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~ 319 (385)
.+.....++.++++.|.+... .+..+.. ...++++|++++|.++.. ....+...++ +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 677788889999988876421 1111111 125778888888877632 1223344445 667888888776
Q ss_pred CC----CccccccC-CCCCeEeccCCcccCCChhh----hhcCCCccEEEccCCccccc
Q 043347 320 GS----LPITLGRL-KKLQGLDLQNNKFEGPIPHE----FCHFSRLYKFYLNRNKLSGS 369 (385)
Q Consensus 320 ~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~ 369 (385)
+. ....+..+ +.++.+++.+|.++...... +..++.++++.+++|++...
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 43 22233444 56788888888887654443 34477888888888887643
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.82 E-value=0.39 Score=24.03 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=7.5
Q ss_pred CCccEEEccCCccc
Q 043347 354 SRLYKFYLNRNKLS 367 (385)
Q Consensus 354 ~~L~~L~l~~~~~~ 367 (385)
++|+.|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.82 E-value=0.39 Score=24.03 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=7.5
Q ss_pred CCccEEEccCCccc
Q 043347 354 SRLYKFYLNRNKLS 367 (385)
Q Consensus 354 ~~L~~L~l~~~~~~ 367 (385)
++|+.|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.40 E-value=0.019 Score=46.45 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=52.7
Q ss_pred CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347 55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL 134 (385)
Q Consensus 55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 134 (385)
...+.+.||++.|++- .....|..+..+..|+++.+++. ..|..+.....+..++...|... -.|.++...++++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4556666777666554 23334555566666677666665 56666666666666666665554 556666667777776
Q ss_pred Eecccccc
Q 043347 135 RIDQNNLV 142 (385)
Q Consensus 135 ~l~~~~~~ 142 (385)
+..++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 66666544
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.33 E-value=0.84 Score=23.42 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=9.4
Q ss_pred CCCCeEeccCCcccCCCh
Q 043347 330 KKLQGLDLQNNKFEGPIP 347 (385)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~ 347 (385)
++|++|+|++|.+.+...
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 345555665555554333
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.26 E-value=0.83 Score=22.88 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=4.9
Q ss_pred CCCCeEeccCC
Q 043347 330 KKLQGLDLQNN 340 (385)
Q Consensus 330 ~~L~~L~l~~~ 340 (385)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.41 E-value=4.2 Score=37.05 Aligned_cols=131 Identities=21% Similarity=0.118 Sum_probs=60.2
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhh-c-CCCcccEEEccCCcccCcCCCCccCC---C
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMC-E-GLPRLKGLYVSYNQFKGPIPNNLWHC---K 81 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~---~ 81 (385)
+.+++++++.|.+.+..|.++..-.. -++++.+..++.+...+. + .-..+.+++++.|.....++..+..+ .
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~---pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN---PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC---ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 45566777777766666655433221 134444433321111111 0 11236677777776665544433222 3
Q ss_pred CCcEEecccccccc---cCCCCccCcccccEEEeecccccC----CCC----cccCCCcCCcEEEeccccc
Q 043347 82 ELSRVSLSFNQFTG---RIPRDLGNSTKLKLLYLSFNNLIG----EIP----QEIGSLRNLEILRIDQNNL 141 (385)
Q Consensus 82 ~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~----~~~----~~~~~l~~L~~L~l~~~~~ 141 (385)
-++.++.+...+.. ..+...+.-+++...++..+.... +.+ +.++.-+++ +|++..++.
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~ 311 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYT 311 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccC
Confidence 45566666554431 111223334566666665543221 222 223344555 666655544
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.37 E-value=0.12 Score=41.91 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=58.6
Q ss_pred ccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccE
Q 043347 30 LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKL 109 (385)
Q Consensus 30 ~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 109 (385)
..... .||++.++.. .....+ +-+..+..++++.+.+. ..+..+.....++.++...|... ..|..+...+++++
T Consensus 41 ~kr~t-vld~~s~r~v-n~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 41 FKRVT-VLDLSSNRLV-NLGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred cceee-eehhhhhHHH-hhccch-HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33344 6788877666 333333 24667777888877766 66667777777888888777766 67888888888888
Q ss_pred EEeeccccc
Q 043347 110 LYLSFNNLI 118 (385)
Q Consensus 110 L~l~~~~~~ 118 (385)
++..++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888877654
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.07 E-value=11 Score=34.57 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=12.8
Q ss_pred cccccEEEeecccccCCCCccc
Q 043347 104 STKLKLLYLSFNNLIGEIPQEI 125 (385)
Q Consensus 104 l~~L~~L~l~~~~~~~~~~~~~ 125 (385)
-+.+++++++.+.+.+..|-.+
T Consensus 164 npr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred cchhhhhccCCCcccccCCccc
Confidence 4556677777666655444443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.49 E-value=4.6 Score=20.32 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=10.1
Q ss_pred CCccEEEccCCccc
Q 043347 354 SRLYKFYLNRNKLS 367 (385)
Q Consensus 354 ~~L~~L~l~~~~~~ 367 (385)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777775
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.01 E-value=3 Score=38.67 Aligned_cols=63 Identities=16% Similarity=0.015 Sum_probs=33.3
Q ss_pred cceeEEEeeccccCCCC--CccccCCCCccEEECcCccccCCCcccccc--CCCCCeEeccCCcccC
Q 043347 282 VSVEEIYMYKCNIHGRI--PKEIGNLINLTKLSLGYNNLSGSLPITLGR--LKKLQGLDLQNNKFEG 344 (385)
Q Consensus 282 ~~l~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~ 344 (385)
+.+..+.+++|++.... ...-...|.|+.|+|++|.........+.. ...|++|-+.||.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 56777777777664321 111123467777777777222112222222 2346677777776654
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.28 E-value=5.5 Score=20.03 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=7.1
Q ss_pred CccEEECcCcccc
Q 043347 307 NLTKLSLGYNNLS 319 (385)
Q Consensus 307 ~L~~L~l~~~~~~ 319 (385)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.77 E-value=4.5 Score=37.59 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=18.3
Q ss_pred CCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCC
Q 043347 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN 267 (385)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (385)
.+.+..+.+++|++..+.. +...-...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~----~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDA----LSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhhchhh----hhHHHHhcchhheeecccc
Confidence 3455555555555554433 2222333455555555555
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.88 E-value=44 Score=38.18 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=18.8
Q ss_pred EeecCccccCCChhhhcCCCcccEEEccCCcc
Q 043347 38 DFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQF 69 (385)
Q Consensus 38 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 69 (385)
||++|+|+ .++...|..+++|+.|+|++|.+
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcc
Confidence 35566666 66666666666666666666544
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.33 E-value=1.4e+02 Score=16.98 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=2.9
Q ss_pred ceeEEEe
Q 043347 283 SVEEIYM 289 (385)
Q Consensus 283 ~l~~L~l 289 (385)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3444444
Done!