Query 043347
Match_columns 385
No_of_seqs 180 out of 2659
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 06:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-43 4.3E-48 345.8 27.4 357 7-372 294-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-43 4E-48 346.0 26.1 370 3-385 219-711 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.3E-40 7.8E-45 315.8 29.1 369 2-380 52-526 (606)
4 3t6q_A CD180 antigen; protein- 100.0 3E-40 1E-44 315.1 27.3 373 2-385 76-554 (606)
5 4eco_A Uncharacterized protein 100.0 5.4E-40 1.8E-44 313.3 25.8 344 23-385 198-594 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-40 2.6E-44 312.3 22.4 141 7-149 32-173 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-39 1.5E-43 307.1 26.7 372 2-385 51-552 (606)
8 4eco_A Uncharacterized protein 100.0 8.6E-40 3E-44 311.9 21.2 361 7-385 81-573 (636)
9 2z63_A TOLL-like receptor 4, v 100.0 2.7E-39 9.1E-44 306.5 22.1 368 7-385 28-525 (570)
10 4ecn_A Leucine-rich repeat pro 100.0 1.7E-38 5.9E-43 308.1 26.9 343 23-385 440-834 (876)
11 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-38 1.1E-42 304.9 28.1 137 3-141 45-183 (680)
12 3v47_A TOLL-like receptor 5B a 100.0 1.1E-38 3.7E-43 293.9 22.8 357 7-371 30-412 (455)
13 2z63_A TOLL-like receptor 4, v 100.0 1.8E-38 6.1E-43 300.8 22.7 363 9-385 9-501 (570)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-37 6.1E-42 299.7 28.9 374 7-385 25-511 (680)
15 4ecn_A Leucine-rich repeat pro 100.0 4.3E-38 1.5E-42 305.4 22.9 364 7-385 323-813 (876)
16 3v47_A TOLL-like receptor 5B a 100.0 1.6E-37 5.6E-42 286.0 24.9 369 10-385 13-402 (455)
17 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-37 9E-42 304.2 25.9 280 6-295 23-375 (844)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-36 5.9E-41 285.8 28.6 367 2-385 45-504 (549)
19 3j0a_A TOLL-like receptor 5; m 100.0 2E-36 6.8E-41 298.0 27.7 371 2-377 68-549 (844)
20 2z7x_B TOLL-like receptor 1, v 100.0 8.2E-36 2.8E-40 279.2 29.0 344 7-368 21-482 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-35 7.2E-40 278.7 29.7 344 6-368 30-511 (562)
22 1o6v_A Internalin A; bacterial 100.0 1.4E-34 4.7E-39 266.8 31.3 324 6-368 45-389 (466)
23 2id5_A Lingo-1, leucine rich r 100.0 3.5E-35 1.2E-39 271.9 25.4 320 10-343 14-333 (477)
24 2id5_A Lingo-1, leucine rich r 100.0 5.1E-35 1.7E-39 270.8 25.0 320 36-368 15-334 (477)
25 1o6v_A Internalin A; bacterial 100.0 5.3E-34 1.8E-38 262.9 30.4 307 3-344 64-389 (466)
26 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-35 4.2E-40 280.0 19.0 183 7-193 26-210 (549)
27 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-34 3.8E-39 271.5 21.5 354 10-385 3-475 (520)
28 4g8a_A TOLL-like receptor 4; l 100.0 5.6E-34 1.9E-38 273.4 25.0 370 8-385 53-574 (635)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-33 3.7E-38 267.0 25.5 331 32-385 32-504 (562)
30 3o6n_A APL1; leucine-rich repe 100.0 2.4E-33 8.2E-38 252.8 25.7 312 29-369 43-354 (390)
31 4fmz_A Internalin; leucine ric 100.0 1E-32 3.5E-37 244.9 26.6 306 28-367 41-346 (347)
32 4fmz_A Internalin; leucine ric 100.0 6E-33 2E-37 246.4 25.0 306 4-343 41-346 (347)
33 3oja_B Anopheles plasmodium-re 100.0 2.4E-32 8.2E-37 259.2 25.3 311 29-368 49-359 (597)
34 3o6n_A APL1; leucine-rich repe 100.0 4.9E-32 1.7E-36 244.3 23.6 304 55-385 43-346 (390)
35 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-32 1.6E-36 260.1 24.8 358 2-368 71-581 (635)
36 3oja_B Anopheles plasmodium-re 100.0 3.2E-31 1.1E-35 251.4 23.5 304 55-385 49-352 (597)
37 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-31 1.5E-35 241.5 23.6 326 3-374 38-394 (457)
38 1jl5_A Outer protein YOPM; leu 100.0 5.2E-30 1.8E-34 234.3 25.8 325 3-377 30-382 (454)
39 3bz5_A Internalin-J, INLJ; leu 100.0 6.2E-30 2.1E-34 234.0 25.5 309 20-368 31-353 (457)
40 1xku_A Decorin; proteoglycan, 100.0 1.8E-29 6.2E-34 222.2 25.9 288 36-365 35-330 (330)
41 1z7x_W Ribonuclease inhibitor; 100.0 4.4E-34 1.5E-38 263.6 -3.9 361 6-369 2-413 (461)
42 1xku_A Decorin; proteoglycan, 100.0 2E-29 6.9E-34 221.9 25.1 295 8-341 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-29 5E-34 223.0 23.8 285 36-365 37-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-29 3.8E-34 223.7 22.8 294 8-341 34-331 (332)
45 1jl5_A Outer protein YOPM; leu 100.0 2.2E-28 7.5E-33 223.5 28.6 273 57-376 131-420 (454)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-33 6.1E-38 259.5 -10.2 366 3-372 24-445 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-29 7.8E-34 219.4 14.9 249 57-341 50-302 (313)
48 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-29 1.9E-33 217.0 17.2 249 105-365 50-302 (313)
49 2z80_A TOLL-like receptor 2, v 100.0 3.1E-27 1.1E-31 209.9 18.8 281 29-346 29-317 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 1.3E-27 4.5E-32 212.3 15.2 285 4-322 28-317 (353)
51 2z66_A Variable lymphocyte rec 99.9 5.4E-27 1.8E-31 204.2 14.4 226 36-274 11-240 (306)
52 2z66_A Variable lymphocyte rec 99.9 1.3E-26 4.5E-31 201.8 16.7 282 60-377 10-297 (306)
53 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-26 7.4E-31 198.3 16.5 224 36-271 15-239 (285)
54 4fcg_A Uncharacterized protein 99.9 1.5E-25 5.1E-30 196.4 21.5 222 7-237 81-311 (328)
55 3ogk_B Coronatine-insensitive 99.9 1.3E-29 4.6E-34 241.0 -5.7 149 225-380 376-540 (592)
56 4fcg_A Uncharacterized protein 99.9 2E-25 6.9E-30 195.6 20.4 234 80-366 80-313 (328)
57 3zyi_A Leucine-rich repeat-con 99.9 3.4E-25 1.1E-29 203.3 22.6 248 82-343 55-303 (452)
58 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-25 5E-30 193.1 18.6 256 84-376 14-270 (285)
59 3zyj_A Leucine-rich repeat-con 99.9 2.3E-25 7.7E-30 203.8 20.6 223 36-269 68-291 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 6E-25 2E-29 201.7 22.7 244 36-293 58-301 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 5.5E-25 1.9E-29 201.2 21.8 246 59-318 45-291 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-24 1.3E-28 201.3 26.8 262 36-351 44-305 (622)
63 3ogk_B Coronatine-insensitive 99.9 2.3E-28 7.9E-33 232.4 -2.5 349 29-385 110-520 (592)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.6E-31 202.4 6.4 244 103-369 32-278 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2E-26 6.7E-31 201.4 5.9 256 107-384 12-268 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-23 9.4E-28 195.6 25.5 265 8-327 41-305 (622)
67 1wwl_A Monocyte differentiatio 99.9 5.4E-26 1.8E-30 198.2 6.0 252 78-368 40-310 (312)
68 2p1m_B Transport inhibitor res 99.9 1.8E-27 6.1E-32 226.5 -5.4 371 4-384 63-512 (594)
69 1wwl_A Monocyte differentiatio 99.9 2.9E-25 1E-29 193.5 6.9 249 53-319 39-309 (312)
70 3oja_A Leucine-rich immune mol 99.9 2E-24 6.7E-29 199.3 9.9 238 102-362 31-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 2.9E-24 9.9E-29 198.2 10.7 238 78-338 31-270 (487)
72 2p1m_B Transport inhibitor res 99.9 1.3E-26 4.4E-31 220.5 -6.4 365 10-385 46-488 (594)
73 2o6q_A Variable lymphocyte rec 99.9 5.5E-22 1.9E-26 169.1 21.4 200 36-241 20-219 (270)
74 2z62_A TOLL-like receptor 4, v 99.9 1.8E-22 6.1E-27 172.9 17.7 205 58-271 29-238 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 1.8E-22 6.1E-27 172.9 17.6 225 11-243 11-240 (276)
76 2o6q_A Variable lymphocyte rec 99.9 8.3E-22 2.8E-26 168.1 21.4 203 8-217 17-219 (270)
77 3rfs_A Internalin B, repeat mo 99.9 3.2E-22 1.1E-26 170.8 15.0 187 177-379 61-247 (272)
78 1p9a_G Platelet glycoprotein I 99.9 4.3E-21 1.5E-25 165.0 18.8 203 4-241 7-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.9E-21 9.8E-26 164.8 16.9 214 11-241 23-236 (272)
80 1p9a_G Platelet glycoprotein I 99.9 1.1E-20 3.7E-25 162.5 20.4 203 28-271 7-209 (290)
81 2xwt_C Thyrotropin receptor; s 99.9 4.1E-21 1.4E-25 160.8 15.8 193 36-267 35-236 (239)
82 2ca6_A RAN GTPase-activating p 99.9 3E-23 1E-27 186.5 1.5 252 97-370 24-319 (386)
83 3goz_A Leucine-rich repeat-con 99.9 3.2E-22 1.1E-26 178.0 6.3 261 85-347 2-301 (362)
84 2ast_B S-phase kinase-associat 99.9 3.9E-22 1.3E-26 176.0 6.7 255 82-375 48-314 (336)
85 3goz_A Leucine-rich repeat-con 99.8 1.5E-22 5E-27 180.2 3.0 259 12-272 3-299 (362)
86 2ast_B S-phase kinase-associat 99.8 1.6E-22 5.4E-27 178.5 2.9 220 36-267 51-282 (336)
87 2xwt_C Thyrotropin receptor; s 99.8 4.8E-20 1.6E-24 154.2 15.9 179 7-192 31-218 (239)
88 2ca6_A RAN GTPase-activating p 99.8 4.9E-23 1.7E-27 185.1 -3.0 268 72-362 23-338 (386)
89 3m19_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 152.0 18.3 176 36-217 18-193 (251)
90 3m19_A Variable lymphocyte rec 99.8 2.9E-19 9.8E-24 150.6 19.7 185 57-246 14-198 (251)
91 4glp_A Monocyte differentiatio 99.8 1E-20 3.6E-25 164.6 10.6 233 105-368 64-308 (310)
92 1h6u_A Internalin H; cell adhe 99.8 4.9E-20 1.7E-24 160.0 14.3 197 27-243 37-233 (308)
93 1h6u_A Internalin H; cell adhe 99.8 9.9E-20 3.4E-24 158.0 15.9 194 125-343 37-230 (308)
94 4glp_A Monocyte differentiatio 99.8 8.3E-20 2.8E-24 158.9 13.6 230 80-344 63-308 (310)
95 4ay9_X Follicle-stimulating ho 99.8 2.5E-18 8.7E-23 152.1 19.5 240 84-364 12-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.5E-23 154.6 16.2 202 10-219 12-218 (350)
97 2o6s_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 139.4 15.1 177 37-226 12-188 (208)
98 2o6s_A Variable lymphocyte rec 99.8 4.6E-18 1.6E-22 139.0 14.7 182 9-204 9-190 (208)
99 1h6t_A Internalin B; cell adhe 99.8 1.1E-17 3.9E-22 143.8 15.0 171 150-343 43-213 (291)
100 2v9t_B SLIT homolog 2 protein 99.7 2.5E-17 8.7E-22 135.5 14.1 151 36-192 15-165 (220)
101 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-17 9.6E-22 135.2 13.5 151 36-192 15-166 (220)
102 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.5E-22 134.0 12.2 154 200-368 41-195 (197)
103 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.8E-22 134.3 11.0 155 26-192 39-194 (197)
104 1h6t_A Internalin B; cell adhe 99.7 2.2E-17 7.5E-22 142.0 12.2 174 27-218 42-215 (291)
105 1m9s_A Internalin B; cell inva 99.7 5.1E-17 1.8E-21 152.8 15.7 173 149-344 39-211 (605)
106 3cvr_A Invasion plasmid antige 99.7 9.6E-17 3.3E-21 149.3 15.9 186 130-352 60-252 (571)
107 2v9t_B SLIT homolog 2 protein 99.7 1.2E-16 4.2E-21 131.4 14.8 151 10-165 14-164 (220)
108 3e6j_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 130.7 15.4 150 36-192 23-172 (229)
109 3sb4_A Hypothetical leucine ri 99.7 2.2E-17 7.7E-22 144.7 9.6 288 56-384 24-327 (329)
110 1m9s_A Internalin B; cell inva 99.7 3.2E-17 1.1E-21 154.2 11.2 147 55-215 63-209 (605)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-16 8.8E-21 129.5 14.9 153 10-166 14-166 (220)
112 2xot_A Amphoterin-induced prot 99.7 1.2E-16 4.1E-21 141.8 13.7 175 36-216 22-202 (361)
113 4fs7_A Uncharacterized protein 99.7 7.1E-16 2.4E-20 138.6 18.9 329 25-383 65-393 (394)
114 3cvr_A Invasion plasmid antige 99.7 2.2E-16 7.7E-21 146.9 15.6 179 32-242 60-245 (571)
115 3e6j_A Variable lymphocyte rec 99.7 6.8E-16 2.3E-20 127.8 15.7 133 81-216 40-172 (229)
116 2xot_A Amphoterin-induced prot 99.7 3.4E-16 1.2E-20 139.0 14.2 177 60-241 21-203 (361)
117 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.4E-21 134.5 10.8 151 199-369 37-187 (263)
118 3sb4_A Hypothetical leucine ri 99.7 5.2E-16 1.8E-20 136.0 12.5 229 48-288 84-327 (329)
119 1xeu_A Internalin C; cellular 99.7 2.4E-16 8.1E-21 133.4 8.8 163 37-217 24-186 (263)
120 4fdw_A Leucine rich hypothetic 99.6 1.9E-14 6.3E-19 128.9 20.3 260 36-318 117-382 (401)
121 4fs7_A Uncharacterized protein 99.6 1.1E-14 3.8E-19 130.8 18.6 316 43-385 58-373 (394)
122 1dce_A Protein (RAB geranylger 99.6 2.4E-17 8.1E-22 154.2 0.7 202 176-385 346-567 (567)
123 4fdw_A Leucine rich hypothetic 99.6 2.5E-14 8.4E-19 128.1 18.4 265 6-294 112-382 (401)
124 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 116.6 8.4 127 256-385 16-147 (149)
125 1w8a_A SLIT protein; signaling 99.6 7.3E-15 2.5E-19 118.1 11.9 127 36-166 12-139 (192)
126 1w8a_A SLIT protein; signaling 99.6 1.2E-14 4.1E-19 116.8 12.0 128 10-142 11-139 (192)
127 2ell_A Acidic leucine-rich nuc 99.6 7.1E-15 2.4E-19 115.6 9.9 128 36-166 28-160 (168)
128 2ell_A Acidic leucine-rich nuc 99.6 8.8E-15 3E-19 115.0 10.4 134 225-368 22-161 (168)
129 1dce_A Protein (RAB geranylger 99.6 2.8E-17 9.7E-22 153.6 -5.8 102 107-215 443-545 (567)
130 2wfh_A SLIT homolog 2 protein 99.6 5.8E-14 2E-18 112.8 13.2 126 36-166 14-139 (193)
131 2wfh_A SLIT homolog 2 protein 99.6 4.2E-14 1.4E-18 113.6 12.2 127 10-142 13-139 (193)
132 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 109.2 13.5 126 36-165 11-136 (177)
133 2je0_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 109.5 9.2 107 254-363 39-149 (149)
134 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 108.8 13.4 131 8-143 8-138 (177)
135 4gt6_A Cell surface protein; l 99.5 9.1E-12 3.1E-16 111.8 23.6 315 47-384 53-384 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.5 8.4E-14 2.9E-18 110.3 9.1 134 222-368 14-154 (176)
137 4b8c_D Glucose-repressible alc 99.5 9.4E-15 3.2E-19 140.9 3.2 115 49-167 216-330 (727)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.9E-18 108.9 8.6 134 198-343 14-153 (176)
139 4b8c_D Glucose-repressible alc 99.4 3.1E-14 1.1E-18 137.2 4.2 152 196-364 217-369 (727)
140 4gt6_A Cell surface protein; l 99.4 3.9E-11 1.3E-15 107.7 22.5 316 26-366 58-390 (394)
141 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.2E-20 121.4 -4.7 153 201-367 16-185 (198)
142 3g39_A Variable lymphocyte rec 99.3 6.1E-12 2.1E-16 98.7 10.6 103 36-142 13-115 (170)
143 3g39_A Variable lymphocyte rec 99.3 8.3E-12 2.8E-16 97.9 10.9 86 257-343 30-115 (170)
144 1ds9_A Outer arm dynein; leuci 99.3 6.3E-15 2.1E-19 119.2 -7.8 154 31-192 18-185 (198)
145 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 97.7 10.7 103 36-142 16-118 (174)
146 3un9_A NLR family member X1; l 99.3 7.7E-14 2.6E-18 123.7 -3.4 66 303-368 180-253 (372)
147 4h09_A Hypothetical leucine ri 99.3 7.7E-10 2.6E-14 98.7 22.2 286 31-338 46-341 (379)
148 2r9u_A Variable lymphocyte rec 99.3 2.6E-11 8.7E-16 95.5 10.8 105 9-118 14-118 (174)
149 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 119.6 -5.1 136 57-192 101-252 (372)
150 4h09_A Hypothetical leucine ri 99.1 1.4E-08 4.7E-13 90.6 22.3 304 3-331 42-357 (379)
151 2ifg_A High affinity nerve gro 99.0 1.3E-09 4.5E-14 96.0 9.3 101 12-117 13-115 (347)
152 2ifg_A High affinity nerve gro 98.9 1.9E-09 6.5E-14 95.0 8.9 103 36-142 12-116 (347)
153 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.4E-14 95.7 5.4 158 197-365 166-341 (362)
154 2ra8_A Uncharacterized protein 98.8 4.1E-09 1.4E-13 92.5 5.3 183 179-370 107-323 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 5.3E-09 1.8E-13 83.0 2.6 123 222-367 31-164 (185)
156 3e4g_A ATP synthase subunit S, 98.6 1.2E-08 4E-13 78.9 1.8 87 282-368 61-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 3.5E-08 1.2E-12 78.2 3.2 124 197-343 30-164 (185)
158 3e4g_A ATP synthase subunit S, 98.5 2.8E-08 9.7E-13 76.7 0.8 80 306-385 61-146 (176)
159 3rw6_A Nuclear RNA export fact 98.3 6.6E-07 2.2E-11 74.5 5.2 79 304-384 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 7.6E-06 2.6E-10 68.1 5.2 82 254-360 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 3.5E-05 1.2E-09 60.7 3.8 120 224-366 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00017 5.9E-09 56.7 3.5 91 177-267 68-167 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0092 3.1E-07 43.6 6.4 56 286-343 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.6 0.023 7.9E-07 41.4 5.6 33 59-91 33-65 (130)
165 2lz0_A Uncharacterized protein 88.2 1.5 5.2E-05 29.9 6.2 43 47-90 10-52 (100)
166 2lz0_A Uncharacterized protein 79.7 6.7 0.00023 26.6 6.4 47 67-114 6-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-43 Score=345.79 Aligned_cols=357 Identities=35% Similarity=0.538 Sum_probs=211.9
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC-CCcE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK-ELSR 85 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~ 85 (385)
++|++|++++|.+.+.+|..+.++++++ +|++++|.+++.+|...+..+++|++|++++|.+.+..+..+..++ +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLE-SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCC-EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCcc-EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 4555555555555544555555555555 4555555555455554444555555555555555544454555544 5555
Q ss_pred EecccccccccCCCCccC--cccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347 86 VSLSFNQFTGRIPRDLGN--STKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163 (385)
Q Consensus 86 L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 163 (385)
|++++|.+.+..+..+.. +++|++|++.+|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 555555555444444443 555666666666655555666666666666666666665555566666666666666666
Q ss_pred cccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347 164 TLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243 (385)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 243 (385)
.+.+..|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+.+++.+++|+.|++++|.+...
T Consensus 453 ~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~- 529 (768)
T 3rgz_A 453 MLEGEIPQE--LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN- 529 (768)
T ss_dssp CCCSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-
T ss_pred cccCcCCHH--HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-
Confidence 655444432 44566666666666666655666666666666666666666655666666666666666666666543
Q ss_pred hhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc-------------------------------------------
Q 043347 244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL------------------------------------------- 280 (385)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------------------------------------- 280 (385)
.+..+..+++|+.|++++|.+.+..|..+...
T Consensus 530 -----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 530 -----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp -----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred -----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 22456666677777777666655544432210
Q ss_pred --------------------------ccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCe
Q 043347 281 --------------------------SVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQG 334 (385)
Q Consensus 281 --------------------------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 334 (385)
.++++.|++++|++.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 134556666666666666666666666666666666666666666666666666
Q ss_pred EeccCCcccCCChhhhhcCCCccEEEccCCcccccCCC
Q 043347 335 LDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPS 372 (385)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 372 (385)
|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 66666666666666666666666666666666666654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-43 Score=346.02 Aligned_cols=370 Identities=33% Similarity=0.484 Sum_probs=210.6
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCC-C
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHC-K 81 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~ 81 (385)
|.++++|++|++++|.+.+.+|..+.++++++ +|++++|.+++.+|.. .+++|++|++++|.+.+..+..+... +
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELK-LLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACD 294 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC-EEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCT
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCC-EEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcC
Confidence 45566666777776666666666666666666 5666666555433332 34444444444444443333333332 4
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcc-cCCCcCCcEEEecccc--------------------
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNN-------------------- 140 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-------------------- 140 (385)
+|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 4444444444444344444444444444444444433333322 3333334444333333
Q ss_pred -------------------------------cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcccc
Q 043347 141 -------------------------------LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLN 189 (385)
Q Consensus 141 -------------------------------~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 189 (385)
+....+..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLN 452 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSS
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH--HhcCCCCCEEECCCC
Confidence 33333334444444444444444444333322 334455555555555
Q ss_pred ccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347 190 NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269 (385)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (385)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~------~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------IPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCC
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc------CChHHhcCCCCCEEECCCCcc
Confidence 55444445555555555555555555544555555555555666555555433 223455666666666666666
Q ss_pred CCCCCCcccccccceeEEEeeccccCCCCCcc------------------------------------------------
Q 043347 270 DGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE------------------------------------------------ 301 (385)
Q Consensus 270 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~------------------------------------------------ 301 (385)
.+..|..+..+ ++++.|++++|++.+.+|..
T Consensus 527 ~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 527 SGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp EEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred cCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 66666666555 56777777766655443332
Q ss_pred ----------------------ccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEE
Q 043347 302 ----------------------IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359 (385)
Q Consensus 302 ----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 359 (385)
+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..++.+++|+.|
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 2234567777777777777778888888888888888888888888888888888888
Q ss_pred EccCCcccccCCCcccccccCccccC
Q 043347 360 YLNRNKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 360 ~l~~~~~~~~~~~~~~~l~~L~~l~i 385 (385)
++++|++++.+|..+.++++|++|++
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ECCCCcccCcCChHHhCCCCCCEEEC
Confidence 88888888888888888888887764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-40 Score=315.85 Aligned_cols=369 Identities=21% Similarity=0.199 Sum_probs=171.9
Q ss_pred CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347 2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (385)
+|.++++|++|++++|.+.+..|.++.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+..+..+..++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD-TLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC-EEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccC-eeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 345556666666666655544455555555555 4666666555 33333334556666666666655544344555555
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCc--EEEeccccccccc--------------
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLE--ILRIDQNNLVGFI-------------- 145 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~-------------- 145 (385)
+|++|++++|.+.+..+..+..+++|++|++++|.+....+..++.+++|+ .+++++|.+....
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 666666665555532222333355555555555555433344444444444 3444443332211
Q ss_pred -------------------------------------------------------------CccccCCCCCcEEEccCCc
Q 043347 146 -------------------------------------------------------------PDTIFNMSTLKTLSLLNNT 164 (385)
Q Consensus 146 -------------------------------------------------------------~~~~~~l~~L~~l~l~~~~ 164 (385)
+..+..+++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 1123334444445544444
Q ss_pred ccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecCCcccccc
Q 043347 165 LSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSST 243 (385)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~ 243 (385)
+. .+|.. +..+++|++|++++|.+....+..+..+++|++|++++|.+... ....+..+++|+.|++++|.+....
T Consensus 290 l~-~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 290 LS-ELPSG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp CS-CCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred cC-CCChh--hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 43 22221 33444555555555544433333444444444444444443311 1223444555555555555444332
Q ss_pred hhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecc-------------------------ccCCCC
Q 043347 244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC-------------------------NIHGRI 298 (385)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-------------------------~~~~~~ 298 (385)
. ....+..+++|+.|++++|.+.+..+..+... +++++|++++| .+.+..
T Consensus 367 ~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 367 C----CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp E----STTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred C----cchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 0 01234444555555555554444333333333 34444444444 444334
Q ss_pred CccccCCCCccEEECcCccccCC---CccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccc
Q 043347 299 PKEIGNLINLTKLSLGYNNLSGS---LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG 375 (385)
Q Consensus 299 ~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 375 (385)
+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+.
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 44444444444444444444321 112344444455555555544444444444455555555555555544444444
Q ss_pred ccccC
Q 043347 376 DLNSL 380 (385)
Q Consensus 376 ~l~~L 380 (385)
+++.|
T Consensus 522 ~l~~L 526 (606)
T 3t6q_A 522 HLKGI 526 (606)
T ss_dssp TCCSC
T ss_pred ccccc
Confidence 44444
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-40 Score=315.08 Aligned_cols=373 Identities=22% Similarity=0.220 Sum_probs=261.7
Q ss_pred CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347 2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (385)
+|.++++|++|++++|.+.+..|..+.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+.....+..++
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 153 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALK-HLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC-EEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred hccCccccCeeeCCCCcccccChhhhccccccc-EeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence 466777777777777777655566666777776 5777777666 44333444666666666666666543333333455
Q ss_pred CCcEEecccccccccCC---------------------------------------------------------------
Q 043347 82 ELSRVSLSFNQFTGRIP--------------------------------------------------------------- 98 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~--------------------------------------------------------------- 98 (385)
+|++|++++|.+.+..+
T Consensus 154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence 55555555554332211
Q ss_pred --------------------------------------CCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccc
Q 043347 99 --------------------------------------RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140 (385)
Q Consensus 99 --------------------------------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 140 (385)
..+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 12334455555555555544 444455555555555555555
Q ss_pred cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC--CcccccCCcccEEEccCcccccc
Q 043347 141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI--PSFFFNASKLYYLELAYNSFSGL 218 (385)
Q Consensus 141 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~ 218 (385)
+....+..+..+++|++|++++|.+....+.. .+..+++|++|++++|.+.... +..+..+++|++|++++|.+.+.
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 55444455555566666666655544333322 2556777777777777766433 45567778888888888877766
Q ss_pred CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC-
Q 043347 219 IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR- 297 (385)
Q Consensus 219 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~- 297 (385)
.+..+..+++|+.|++++|.+..... ...+..+++|+.|++++|.+.+..+..+... +++++|++++|++.+.
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDA-----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTT-----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGE
T ss_pred CHHHhcCCccCCeEECCCCcCCCccc-----chhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCCCCCccc
Confidence 67777788888888888887765422 1347788999999999999988888777776 8999999999998762
Q ss_pred --CCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccc
Q 043347 298 --IPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG 375 (385)
Q Consensus 298 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 375 (385)
.+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++| .|++++|++++..|..+.
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence 33568889999999999999998888899999999999999999998888899999999 999999999988888888
Q ss_pred ccccCccccC
Q 043347 376 DLNSLRILSL 385 (385)
Q Consensus 376 ~l~~L~~l~i 385 (385)
.+++|+.+++
T Consensus 545 ~l~~L~~L~l 554 (606)
T 3t6q_A 545 ILSQQRTINL 554 (606)
T ss_dssp HHHTSSEEEC
T ss_pred cCCCCCEEeC
Confidence 8999988864
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.4e-40 Score=313.29 Aligned_cols=344 Identities=19% Similarity=0.329 Sum_probs=278.7
Q ss_pred CCcccccccceeceeEeecCccccC-----------------CChhhh-cCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347 23 IPASIFNLSSISTGLDFSNNSLTGS-----------------FPDDMC-EGLPRLKGLYVSYNQFKGPIPNNLWHCKELS 84 (385)
Q Consensus 23 ~~~~~~~~~~l~~~L~l~~~~~~~~-----------------~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 84 (385)
+|..+.++++++ +|++++|.+++. +|..+. ..+++|++|++++|.+.+..+..+..+++|+
T Consensus 198 ip~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLR-QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCC-EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCC-EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 777888888998 799999999853 777653 2689999999999998888888999999999
Q ss_pred EEeccccc-ccc-cCCCCccCc------ccccEEEeecccccCCCCc--ccCCCcCCcEEEecccccccccCccccCCCC
Q 043347 85 RVSLSFNQ-FTG-RIPRDLGNS------TKLKLLYLSFNNLIGEIPQ--EIGSLRNLEILRIDQNNLVGFIPDTIFNMST 154 (385)
Q Consensus 85 ~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 154 (385)
+|++++|. +.+ .+|..+..+ ++|++|++++|.+. .+|. .++.+++|+.|++++|.+...++ .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99999997 776 677777665 89999999999988 7887 89999999999999999885666 7888899
Q ss_pred CcEEEccCCcccccCCCCcccCCCCC-CceEEccccccCCCCCcccccCC--cccEEEccCccccccCccccc-------
Q 043347 155 LKTLSLLNNTLSGNLPSSKKLIGLPN-LEGLILGLNNFSGSIPSFFFNAS--KLYYLELAYNSFSGLIPKALG------- 224 (385)
Q Consensus 155 L~~l~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~------- 224 (385)
|+.|++++|.+. .+|.. +..+++ |++|++++|.+. ..+..+...+ +|++|++++|.+.+..+..+.
T Consensus 355 L~~L~L~~N~l~-~lp~~--l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPAN--FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp ESEEECCSSEEE-ECCTT--SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCEEECCCCccc-cccHh--hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 999999999887 55543 667788 999999999888 4555665544 899999999998877777676
Q ss_pred CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccccc-------ceeEEEeeccccCCC
Q 043347 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSV-------SVEEIYMYKCNIHGR 297 (385)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~l~~L~l~~~~~~~~ 297 (385)
.+++|+.|++++|.+...+. ..+..+++|+.|++++|.+. ..|........ ++++|++++|++. .
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred cCCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 77899999999998886543 34566889999999999888 44444333212 8999999999988 5
Q ss_pred CCcccc--CCCCccEEECcCccccCCCccccccCCCCCeEec------cCCcccCCChhhhhcCCCccEEEccCCccccc
Q 043347 298 IPKEIG--NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDL------QNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGS 369 (385)
Q Consensus 298 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 369 (385)
+|..+. .+++|++|++++|.+.+ +|..+..+++|+.|++ ++|++.+..|..+..+++|++|++++|++ +.
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ 580 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence 666665 88999999999999985 7888888999999999 45777788888898999999999999999 46
Q ss_pred CCCcccccccCccccC
Q 043347 370 IPSCLGDLNSLRILSL 385 (385)
Q Consensus 370 ~~~~~~~l~~L~~l~i 385 (385)
+|..+. ++|+.|++
T Consensus 581 ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 581 VNEKIT--PNISVLDI 594 (636)
T ss_dssp CCSCCC--TTCCEEEC
T ss_pred cCHhHh--CcCCEEEC
Confidence 676654 67777654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-40 Score=312.25 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=105.5
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
+++++|++++|.+.+..+..+.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQ-WLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCc-EEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 5678888888888765666777788887 6888888877 5555555678888888888888776667778888888888
Q ss_pred ecccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccc
Q 043347 87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTI 149 (385)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 149 (385)
++++|.+....+..++++++|++|++++|.+.+ .+|..++.+++|++|++++|.++...+..+
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 888887775555677788888888888887765 457778888888888888877765544433
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-39 Score=307.06 Aligned_cols=372 Identities=21% Similarity=0.229 Sum_probs=249.4
Q ss_pred CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347 2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (385)
+|.++++|++|++++|.+.+..|.++.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+..+..+..++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~-~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS-NLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC-EEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcC-EeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 577888888888888888866677788888888 7888888888 55445556888888888888888766666788888
Q ss_pred CCcEEecccccccc-cCCCCccCcccccEEEeecccccCCCCcccCCCc---------------------------CCcE
Q 043347 82 ELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLR---------------------------NLEI 133 (385)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~---------------------------~L~~ 133 (385)
+|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+. +|+.
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 88888888888764 4577788888888888888776544333222111 3344
Q ss_pred EEecccccc-----------------------------------------------------------------------
Q 043347 134 LRIDQNNLV----------------------------------------------------------------------- 142 (385)
Q Consensus 134 L~l~~~~~~----------------------------------------------------------------------- 142 (385)
|++++|.+.
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence 444333221
Q ss_pred ---------cccCccccCCCCCcEEEccCCcccccCCCC------------------cccCCCCCCceEEccccccCCC-
Q 043347 143 ---------GFIPDTIFNMSTLKTLSLLNNTLSGNLPSS------------------KKLIGLPNLEGLILGLNNFSGS- 194 (385)
Q Consensus 143 ---------~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~~~~~~~- 194 (385)
...+ .+..+++|+++++++|.+ +.+|.. ..+..+++|++|++++|.+...
T Consensus 289 ~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 289 AMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp EEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEE
T ss_pred EEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCc
Confidence 0111 344455677777777766 344421 0123444555555555544422
Q ss_pred -CCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC
Q 043347 195 -IPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273 (385)
Q Consensus 195 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (385)
.+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+....+ ...+..+++|+.|++++|.+.+..
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE-----FSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTT-----TTTTTTCTTCCEEECTTSCCEECC
T ss_pred chhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccC-----hhhhhccccCCEEECcCCCCCccc
Confidence 134455566666666666665532 3456666677777777766655421 135667778888888888777766
Q ss_pred CCcccccccceeEEEeeccccCC-CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhc
Q 043347 274 PSSIGNLSVSVEEIYMYKCNIHG-RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352 (385)
Q Consensus 274 ~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 352 (385)
+..+... +++++|++++|++.+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|..+..
T Consensus 441 ~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 441 DGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp TTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred hhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 6666666 678888888887775 35667777888888888888887667777777888888888888887766777777
Q ss_pred CCCccEEEccCCcccccCCCcccccc-cCccccC
Q 043347 353 FSRLYKFYLNRNKLSGSIPSCLGDLN-SLRILSL 385 (385)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~i 385 (385)
+++|+.|++++|+++ .+|..+..++ +|+.+++
T Consensus 520 l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp CTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred CCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 888888888888877 4555566665 4776653
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-40 Score=311.88 Aligned_cols=361 Identities=22% Similarity=0.303 Sum_probs=303.4
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCcc------------------------------------------
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSL------------------------------------------ 44 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~------------------------------------------ 44 (385)
.+++.|+|+++.+.+.+|++++++..++ +|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~-~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELE-VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCC-EEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhcCccce-EEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 4789999999999999999999999999 799998843
Q ss_pred ------------------------------------ccCCChhhhcCCCcccEEEccCCcccCc----------------
Q 043347 45 ------------------------------------TGSFPDDMCEGLPRLKGLYVSYNQFKGP---------------- 72 (385)
Q Consensus 45 ------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------- 72 (385)
++ +|..+ ..+++|++|++++|.+.+.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhcc
Confidence 32 56554 4799999999999999874
Q ss_pred -CCCCcc--CCCCCcEEecccccccccCCCCccCcccccEEEeeccc-ccC-CCCcccCCC------cCCcEEEeccccc
Q 043347 73 -IPNNLW--HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN-LIG-EIPQEIGSL------RNLEILRIDQNNL 141 (385)
Q Consensus 73 -~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~ 141 (385)
++..+. .+++|++|++++|.+.+..|..+.++++|++|++++|. +.+ .+|..++.+ ++|++|++++|.+
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 788888 99999999999999888999999999999999999998 776 678777765 9999999999999
Q ss_pred ccccCc--cccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCc-ccEEEccCcccccc
Q 043347 142 VGFIPD--TIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK-LYYLELAYNSFSGL 218 (385)
Q Consensus 142 ~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~ 218 (385)
+ .+|. .+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.+. ..+..+..+++ |++|++++|.+. .
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 8 6777 89999999999999999987777 3678889999999999988 56667888888 999999999988 4
Q ss_pred CcccccCCC--CccEEEecCCcccccchhhhhhhHhhh-------cccCceEEEccCCCCCCCCCCcccccccceeEEEe
Q 043347 219 IPKALGQLR--NLERLGLQSNYLTSSTSELMSLFSALV-------NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289 (385)
Q Consensus 219 ~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l 289 (385)
.+..+...+ +|+.|++++|.+....+ ..+. .+++|+.|++++|.+.. .|..+....+++++|++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p------~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDG------KNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINL 464 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTT------CSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEEC
T ss_pred cchhhhhcccCccCEEECcCCcCCCcch------hhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEEC
Confidence 566665544 89999999998876532 3344 67799999999999984 44444433379999999
Q ss_pred eccccCCCCCccccCC-------CCccEEECcCccccCCCccccc--cCCCCCeEeccCCcccCCChhhhhcCCCccEEE
Q 043347 290 YKCNIHGRIPKEIGNL-------INLTKLSLGYNNLSGSLPITLG--RLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360 (385)
Q Consensus 290 ~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 360 (385)
++|++....+..+... ++|+.|++++|.+. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|+
T Consensus 465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542 (636)
T ss_dssp CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence 9999984433344333 39999999999999 7787776 89999999999999996 888889999999999
Q ss_pred c------cCCcccccCCCcccccccCccccC
Q 043347 361 L------NRNKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 361 l------~~~~~~~~~~~~~~~l~~L~~l~i 385 (385)
+ ++|++.+.+|..+.++++|+.|++
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 9 567788889999999999998875
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=306.46 Aligned_cols=368 Identities=19% Similarity=0.197 Sum_probs=237.1
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
+++++|++++|.+.+..+.++.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCC-EEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCce-EEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 3577777777777655555667777777 6777777776 5555566667777777777777766666677777777777
Q ss_pred ecccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCCC----cEEEcc
Q 043347 87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL----KTLSLL 161 (385)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~l~l~ 161 (385)
++++|.+....+..++++++|++|++++|.+.. .+|..++++++|++|++++|.+....+..+..+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 777777664444456777777777777776664 356667777777777777776655444444444443 344444
Q ss_pred CCcccccCCCC---------------------------------------------------------------------
Q 043347 162 NNTLSGNLPSS--------------------------------------------------------------------- 172 (385)
Q Consensus 162 ~~~~~~~~~~~--------------------------------------------------------------------- 172 (385)
+|.+....+..
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 43322111100
Q ss_pred ----------cccCCCCCCceEEccccccCCCCCccc------------------------------------------c
Q 043347 173 ----------KKLIGLPNLEGLILGLNNFSGSIPSFF------------------------------------------F 200 (385)
Q Consensus 173 ----------~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------------------------~ 200 (385)
..+..+++|+++++.++.+.. .+..+ .
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence 012223444444444444331 22222 2
Q ss_pred cCCcccEEEccCccccccC--cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC-cc
Q 043347 201 NASKLYYLELAYNSFSGLI--PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS-SI 277 (385)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~ 277 (385)
.+++|++|++++|.+.... +..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.+..+. .+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-------SNFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-------EEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-------ccccccCCCCEEEccCCccccccchhhh
Confidence 2334444444444433221 233344455555555555444332 1256677777777777777665553 33
Q ss_pred cccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc-CCCccccccCCCCCeEeccCCcccCCChhhhhcCCCc
Q 043347 278 GNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS-GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRL 356 (385)
Q Consensus 278 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 356 (385)
... +++++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..+..+..+++|
T Consensus 418 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 418 LSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 444 78888888888888777778888889999999998887 4577788888999999999998887778888888999
Q ss_pred cEEEccCCcccccCCCcccccccCccccC
Q 043347 357 YKFYLNRNKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~i 385 (385)
+.|++++|++++..+..+.++++|+.|++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 99999999988877888888888888764
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-38 Score=308.13 Aligned_cols=343 Identities=18% Similarity=0.306 Sum_probs=253.3
Q ss_pred CCcccccccceeceeEeecCcccc-----------------CCChhh-hcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347 23 IPASIFNLSSISTGLDFSNNSLTG-----------------SFPDDM-CEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS 84 (385)
Q Consensus 23 ~~~~~~~~~~l~~~L~l~~~~~~~-----------------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 84 (385)
+|..+.++++++ +|++++|.+++ .+|..+ |..+++|++|++++|.+.+..+..|..+++|+
T Consensus 440 IP~~l~~L~~L~-~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQ-IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCC-EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCC-EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 677778888888 78888888885 277765 44688888888888887777888888888888
Q ss_pred EEeccccc-ccc-cCCCCccCc-------ccccEEEeecccccCCCCc--ccCCCcCCcEEEecccccccccCccccCCC
Q 043347 85 RVSLSFNQ-FTG-RIPRDLGNS-------TKLKLLYLSFNNLIGEIPQ--EIGSLRNLEILRIDQNNLVGFIPDTIFNMS 153 (385)
Q Consensus 85 ~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 153 (385)
+|++++|. +.+ .+|..+..+ ++|++|++++|.+. .+|. .++.+++|+.|++++|.+. .+| .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 88888887 665 566544444 48888888888887 7777 7888888888888888877 555 777888
Q ss_pred CCcEEEccCCcccccCCCCcccCCCCC-CceEEccccccCCCCCcccccCC--cccEEEccCccccccCccc---cc--C
Q 043347 154 TLKTLSLLNNTLSGNLPSSKKLIGLPN-LEGLILGLNNFSGSIPSFFFNAS--KLYYLELAYNSFSGLIPKA---LG--Q 225 (385)
Q Consensus 154 ~L~~l~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~ 225 (385)
+|+.|++++|.+. .+|.. +..+++ |+.|++++|.+. .++..+...+ +|+.|++++|.+.+..+.. +. .
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~--l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPED--FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp EESEEECCSSCCS-CCCTT--SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred cceEEECcCCccc-cchHH--HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 8888888888876 55543 556777 888888888877 4555555544 3888888888876543321 11 3
Q ss_pred CCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccc-------cceeEEEeeccccCCCC
Q 043347 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS-------VSVEEIYMYKCNIHGRI 298 (385)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~l~~L~l~~~~~~~~~ 298 (385)
.++|+.|++++|.+...+. ..+..+++|+.|++++|.+. ..|....... ++|+.|++++|++. .+
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPT------ELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp CCCEEEEECCSSCCCSCCH------HHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred CCCcCEEEccCCcCCccCH------HHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 4578888888888876533 23456788888888888877 4444443321 27888888888887 56
Q ss_pred Ccccc--CCCCccEEECcCccccCCCccccccCCCCCeEeccC------CcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347 299 PKEIG--NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN------NKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI 370 (385)
Q Consensus 299 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 370 (385)
|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+..|..+..+++|+.|++++|++ +.+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence 66665 78888888888888885 677788888888888865 667778888888888888888888888 566
Q ss_pred CCcccccccCccccC
Q 043347 371 PSCLGDLNSLRILSL 385 (385)
Q Consensus 371 ~~~~~~l~~L~~l~i 385 (385)
|..+. ++|+.|+|
T Consensus 822 p~~l~--~~L~~LdL 834 (876)
T 4ecn_A 822 DEKLT--PQLYILDI 834 (876)
T ss_dssp CSCCC--SSSCEEEC
T ss_pred CHhhc--CCCCEEEC
Confidence 76554 46766654
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-38 Score=304.95 Aligned_cols=137 Identities=20% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (385)
|.++++|++|++++|.+.+..|..+.++++++ +|++++|.++ .+|...+..+++|++|++++|.+.+..+..|..+++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLK-VLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC-EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcC-EEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 34455555555555555544444455555555 4555555555 445444445555555555555554444444555555
Q ss_pred CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccC--CCcCCcEEEeccccc
Q 043347 83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIG--SLRNLEILRIDQNNL 141 (385)
Q Consensus 83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~ 141 (385)
|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 55555555555444444445555555555555544433322221 234444444444443
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-38 Score=293.91 Aligned_cols=357 Identities=19% Similarity=0.207 Sum_probs=265.7
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
+++++|++++|.+.+..+..+.++++++ +|+++++.+.+.++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQ-FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCC-EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCcccc-EEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 5678888888888766677778888887 688888877656666666778888888888888776667778888888888
Q ss_pred ecccccccccCCC--CccCcccccEEEeecccccCCCCcc-cCCCcCCcEEEecccccccccCccccCC--CCCcEEEcc
Q 043347 87 SLSFNQFTGRIPR--DLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIFNM--STLKTLSLL 161 (385)
Q Consensus 87 ~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~l~l~ 161 (385)
++++|.+.+..+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+....+..+..+ .+++.++++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 8888877643333 3777888888888888877665655 6778888888888888776666666655 577788888
Q ss_pred CCcccccCCCCc------ccCCCCCCceEEccccccCCCCCccccc---CCcccEEEccCcccccc----------Cccc
Q 043347 162 NNTLSGNLPSSK------KLIGLPNLEGLILGLNNFSGSIPSFFFN---ASKLYYLELAYNSFSGL----------IPKA 222 (385)
Q Consensus 162 ~~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~----------~~~~ 222 (385)
++.+....+... .+..+++|++|++++|.+.+..+..+.. .++++.+++++|..... ....
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 777654322110 1224567888888888766444443333 26788888877643221 1111
Q ss_pred cc--CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc
Q 043347 223 LG--QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300 (385)
Q Consensus 223 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 300 (385)
+. ..++|+.|++++|.+.... ...+..+++|+.|++++|.+.+..+..+..+ +++++|++++|.+.+..+.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALL------KSVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEEC------TTTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGG
T ss_pred cccccccCceEEEecCccccccc------hhhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChh
Confidence 11 2368899999998887653 3467788899999999999887777777776 7899999999998877788
Q ss_pred cccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCC
Q 043347 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371 (385)
Q Consensus 301 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 371 (385)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88889999999999999987778888889999999999999987666677888999999999999887655
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=300.78 Aligned_cols=363 Identities=21% Similarity=0.197 Sum_probs=267.0
Q ss_pred ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347 9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL 88 (385)
Q Consensus 9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 88 (385)
.+.++.++..++ .+|..+. ++++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTK-NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCC-EEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCcc-ccCCCcc--cccc-EEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeC
Confidence 345677776776 6777543 3455 8999999999 677667779999999999999998877888999999999999
Q ss_pred ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc-ccCccccCCCCCcEEEccCCcccc
Q 043347 89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG-FIPDTIFNMSTLKTLSLLNNTLSG 167 (385)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~ 167 (385)
++|.+....+..+.++++|++|++.+|.+....+..++.+++|++|++++|.+.. ..|..+..+++|++|++++|.+..
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 9999987777899999999999999999886555579999999999999999886 358889999999999999998765
Q ss_pred cCCCCcccCCCCCC----ceEEccccccC---------------------------------------------------
Q 043347 168 NLPSSKKLIGLPNL----EGLILGLNNFS--------------------------------------------------- 192 (385)
Q Consensus 168 ~~~~~~~~~~~~~L----~~L~l~~~~~~--------------------------------------------------- 192 (385)
..+.. +..+++| ..++++.|.+.
T Consensus 164 ~~~~~--~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 164 IYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp ECGGG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred ecHHH--ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 43221 2223333 34444443322
Q ss_pred ------------------------------CCCCcccccCCcccEEEccCccccccCcccccC-----------------
Q 043347 193 ------------------------------GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ----------------- 225 (385)
Q Consensus 193 ------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------- 225 (385)
+..+..+..+++|++|++++|.+.. .+..+..
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~ 320 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFP 320 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCC
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccC
Confidence 1223345556778888887776653 2333333
Q ss_pred -------------------------CCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc
Q 043347 226 -------------------------LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL 280 (385)
Q Consensus 226 -------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 280 (385)
+++|+.|++++|.+..... ....+..+++|+.|++++|.+.+..+. +...
T Consensus 321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l 395 (570)
T 2z63_A 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL 395 (570)
T ss_dssp BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE----EEHHHHTCSCCCEEECCSCSEEEEEEE-EETC
T ss_pred cccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc----ccccccccCccCEEECCCCcccccccc-cccc
Confidence 3334444444443332210 123455667777777777766644333 4444
Q ss_pred ccceeEEEeeccccCCCCC-ccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCccc-CCChhhhhcCCCccE
Q 043347 281 SVSVEEIYMYKCNIHGRIP-KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE-GPIPHEFCHFSRLYK 358 (385)
Q Consensus 281 ~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~ 358 (385)
+++++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ +..|..+..+++|++
T Consensus 396 -~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 396 -EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp -TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred -CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 678888888888776544 45778888899999988888777888888899999999999886 456777888899999
Q ss_pred EEccCCcccccCCCcccccccCccccC
Q 043347 359 FYLNRNKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 359 L~l~~~~~~~~~~~~~~~l~~L~~l~i 385 (385)
|++++|++++..|..+.++++|+.|++
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCccccCChhhhhcccCCCEEeC
Confidence 999999998888888888888888764
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-37 Score=299.73 Aligned_cols=374 Identities=23% Similarity=0.283 Sum_probs=240.3
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
+++++|++++|.+.+..+..+.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLT-SLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCS-EEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCc-EEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 5799999999999966666789999999 7999999999 6666666789999999999999986666689999999999
Q ss_pred ecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCcccc--CCCCCcEEEccCCc
Q 043347 87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF--NMSTLKTLSLLNNT 164 (385)
Q Consensus 87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~~~ 164 (385)
++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999866667899999999999999999888888899999999999999988766555443 45788888888887
Q ss_pred ccccCCCCcccCC---------------------------CCCCceEEccccccCCCCCcccccCCc--ccEEEccCccc
Q 043347 165 LSGNLPSSKKLIG---------------------------LPNLEGLILGLNNFSGSIPSFFFNASK--LYYLELAYNSF 215 (385)
Q Consensus 165 ~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~ 215 (385)
+.+..+.. +.. .+.|+.|+++++.+.+..+..+..++. |++|++++|.+
T Consensus 183 l~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 183 IKEFSPGC--FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCBCTTG--GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred ccccChhh--hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 65433321 111 133444444444433333333333322 44444444444
Q ss_pred cccCcccccCCCCccEEEecCCcccccchhhh-----------------------hhh----HhhhcccCceEEEccCCC
Q 043347 216 SGLIPKALGQLRNLERLGLQSNYLTSSTSELM-----------------------SLF----SALVNCKSLKVIVLAENP 268 (385)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------------~~~----~~~~~~~~L~~L~l~~~~ 268 (385)
....+..+..+++|+.|++++|.+....+... .+. ..+..+++|+.|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 43333344444444444444443332211000 000 134455666666666665
Q ss_pred CCCCCCCcccccccc----------------------------eeEEEeeccccCCCCCccccCCCCccEEECcCccccC
Q 043347 269 VDGVLPSSIGNLSVS----------------------------VEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG 320 (385)
Q Consensus 269 ~~~~~~~~~~~~~~~----------------------------l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 320 (385)
+.+..+..+... ++ ++.|++++|++.+..+.++..+++|+.|++++|.+.+
T Consensus 341 l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 341 IPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp BCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred cCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 555444433332 33 3344444444444445555666666666666666654
Q ss_pred CCc-cccccCCCCCeEeccCCcccC--------------------------CChhhhhcCCCccEEEccCCcccccCCCc
Q 043347 321 SLP-ITLGRLKKLQGLDLQNNKFEG--------------------------PIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373 (385)
Q Consensus 321 ~~~-~~~~~~~~L~~L~l~~~~~~~--------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (385)
.++ ..+..+++|+.|++++|++.+ ..|..+..+++|+.|++++|+++++.+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 333 345555555555555554432 34445556667777777777776666666
Q ss_pred ccccccCccccC
Q 043347 374 LGDLNSLRILSL 385 (385)
Q Consensus 374 ~~~l~~L~~l~i 385 (385)
+.++++|+.|++
T Consensus 500 ~~~l~~L~~L~L 511 (680)
T 1ziw_A 500 LEGLEKLEILDL 511 (680)
T ss_dssp TTTCTTCCEEEC
T ss_pred hccccccCEEeC
Confidence 667777766653
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.3e-38 Score=305.37 Aligned_cols=364 Identities=20% Similarity=0.272 Sum_probs=298.8
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEe-ecCccccC--------------------------------------
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDF-SNNSLTGS-------------------------------------- 47 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l-~~~~~~~~-------------------------------------- 47 (385)
.+++.|+|+++.+.+.+|+++.+++.++ +|++ ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~-~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELK-VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCC-EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccce-EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5789999999999999999999999999 7999 66644322
Q ss_pred --------------------------------------CChhhhcCCCcccEEEccCCcccC-----------------c
Q 043347 48 --------------------------------------FPDDMCEGLPRLKGLYVSYNQFKG-----------------P 72 (385)
Q Consensus 48 --------------------------------------~~~~~~~~~~~L~~L~l~~~~~~~-----------------~ 72 (385)
+|..+ ..+++|++|++++|.+.+ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 56554 479999999999999987 2
Q ss_pred CCCCcc--CCCCCcEEecccccccccCCCCccCcccccEEEeeccc-ccC-CCCcccCCC-------cCCcEEEeccccc
Q 043347 73 IPNNLW--HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN-LIG-EIPQEIGSL-------RNLEILRIDQNNL 141 (385)
Q Consensus 73 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~ 141 (385)
+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ .+|..++.+ ++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 777777 99999999999999888899999999999999999998 765 567655544 4999999999999
Q ss_pred ccccCc--cccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCc-ccEEEccCcccccc
Q 043347 142 VGFIPD--TIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK-LYYLELAYNSFSGL 218 (385)
Q Consensus 142 ~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~ 218 (385)
. .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp---~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE---AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC---CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch---hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 8 6777 8999999999999999987 666 3778999999999999988 66777888888 999999999988 4
Q ss_pred CcccccCCC--CccEEEecCCcccccchhhhhhhHhhh--cccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347 219 IPKALGQLR--NLERLGLQSNYLTSSTSELMSLFSALV--NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294 (385)
Q Consensus 219 ~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 294 (385)
.+..+...+ +|+.|++++|.+....+.+. ..+. .+++|+.|++++|.+. ..|..+....++++.|++++|++
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS---CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS---SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccch---hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 566666554 49999999998876433211 1222 3458999999999998 45555443337999999999999
Q ss_pred CCCCCcccc-------CCCCccEEECcCccccCCCccccc--cCCCCCeEeccCCcccCCChhhhhcCCCccEEEccC--
Q 043347 295 HGRIPKEIG-------NLINLTKLSLGYNNLSGSLPITLG--RLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNR-- 363 (385)
Q Consensus 295 ~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-- 363 (385)
.......+. .+++|++|++++|.+. .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 843333333 2349999999999998 7788886 89999999999999996 788888999999999976
Q ss_pred ----CcccccCCCcccccccCccccC
Q 043347 364 ----NKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 364 ----~~~~~~~~~~~~~l~~L~~l~i 385 (385)
|++.+.+|..+.++++|+.|++
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CcccccccccChHHHhcCCCCCEEEC
Confidence 7788889999999999999875
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-37 Score=286.01 Aligned_cols=369 Identities=21% Similarity=0.207 Sum_probs=294.6
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc-CCCCccCCCCCcEEec
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP-IPNNLWHCKELSRVSL 88 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 88 (385)
+.++.+++.++ .+|. + .++++ +|++++|.++ .++...+..+++|++|++++|.+.+. .+..|..+++|++|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~-~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVN-YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCC-EEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcc-cCCC-C--CCccC-EEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 45677777776 6665 2 24566 8999999998 55555566899999999999988643 4667899999999999
Q ss_pred ccccccccCCCCccCcccccEEEeecccccCCCCcc--cCCCcCCcEEEecccccccccCcc-ccCCCCCcEEEccCCcc
Q 043347 89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE--IGSLRNLEILRIDQNNLVGFIPDT-IFNMSTLKTLSLLNNTL 165 (385)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~ 165 (385)
++|.+....|..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999998777889999999999999999887644444 888999999999999998776665 78999999999999998
Q ss_pred cccCCCCcccCCCCCCceEEccccccCCCCCcc--------cccCCcccEEEccCccccccCcccccC---CCCccEEEe
Q 043347 166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSF--------FFNASKLYYLELAYNSFSGLIPKALGQ---LRNLERLGL 234 (385)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l 234 (385)
.+..+....-.....++.++++++.+....... +..+++|++|++++|.+.+..+..+.. .++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 765554322222368899999999887544333 235678999999999887655554433 388999999
Q ss_pred cCCcccccchhhhh----hhHhhh--cccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347 235 QSNYLTSSTSELMS----LFSALV--NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL 308 (385)
Q Consensus 235 ~~~~~~~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L 308 (385)
+++........... ....+. ..++|+.|++++|.+.+..+..+..+ +++++|++++|++.+..+..+..+++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccC
Confidence 98754332110000 001111 24789999999999998888888777 899999999999998888889999999
Q ss_pred cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccccC
Q 043347 309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~i 385 (385)
++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 99999999998777888999999999999999999888889999999999999999999877778889999998865
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=304.25 Aligned_cols=280 Identities=20% Similarity=0.189 Sum_probs=188.1
Q ss_pred cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347 6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR 85 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 85 (385)
.+++++|++++|.+.+..+.++.++.+++ +|++++|...+.++...+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~-~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQ-LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCS-EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCe-EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 36789999999999877788889999998 79999996555777777778999999999999998778889999999999
Q ss_pred EecccccccccCCCC--ccCcccccEEEeecccccCCCC-cccCCCcCCcEEEecccccccccCccccCC--CCCcEEEc
Q 043347 86 VSLSFNQFTGRIPRD--LGNSTKLKLLYLSFNNLIGEIP-QEIGSLRNLEILRIDQNNLVGFIPDTIFNM--STLKTLSL 160 (385)
Q Consensus 86 L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~l~l 160 (385)
|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+....+..+..+ ++|+.+++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999887655554 8889999999999998876544 568899999999999988876655555544 55555555
Q ss_pred cCCcccccCCCCcccCC---------------------------------------------------------------
Q 043347 161 LNNTLSGNLPSSKKLIG--------------------------------------------------------------- 177 (385)
Q Consensus 161 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 177 (385)
+.|.+.+..+.. +..
T Consensus 182 ~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 182 AANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp CCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred CCCccccccccc--hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 555443322211 111
Q ss_pred -----CCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHh
Q 043347 178 -----LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA 252 (385)
Q Consensus 178 -----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 252 (385)
.++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.... ...
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~ 333 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY------SSN 333 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC------SCS
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC------HHH
Confidence 134555555555444444444555555555555555555444455555555556665555554432 134
Q ss_pred hhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccC
Q 043347 253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295 (385)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 295 (385)
+..+++|+.|++++|.+....+..+..+ ++++.|++++|.+.
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALT 375 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCC
Confidence 5555566666666665554444444444 55666666555543
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-36 Score=285.78 Aligned_cols=367 Identities=21% Similarity=0.205 Sum_probs=222.3
Q ss_pred CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc-CCCCccCC
Q 043347 2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP-IPNNLWHC 80 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~ 80 (385)
+|.++++|++|++++|.+.+..+.++.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+. .+..+..+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLE-HLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCC-EEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 356666666666666666655555666666666 5777766666 55555455666777777766666542 34456666
Q ss_pred CCCcEEecccccccccCC-CCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEE
Q 043347 81 KELSRVSLSFNQFTGRIP-RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS 159 (385)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 159 (385)
++|++|++++|...+..+ ..+.++++|++|++++|.+.+..|..+..+++|+.|+++++.........+..+++|++++
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 677777776665322333 4566667777777776666655566666555555555555544322111123455666666
Q ss_pred ccCCcccccCC-CCccc----------------------------------------------------------CCC--
Q 043347 160 LLNNTLSGNLP-SSKKL----------------------------------------------------------IGL-- 178 (385)
Q Consensus 160 l~~~~~~~~~~-~~~~~----------------------------------------------------------~~~-- 178 (385)
+++|.+.+... ..... ..+
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 66655543100 00000 111
Q ss_pred ---------------------------CCCceEEccccccCCCCCcccccCCcccEEEccCccccccCc---ccccCCCC
Q 043347 179 ---------------------------PNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP---KALGQLRN 228 (385)
Q Consensus 179 ---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~ 228 (385)
++|+.++++++.+.......+..+++|++|++++|.+.+..+ ..++.+++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 223333333333331111222456777777777777764332 23566777
Q ss_pred ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL 308 (385)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L 308 (385)
|+.|++++|.++..+. ....+..+++|+.|++++|.+. ..|..+... +++++|++++|++.. ++..+ .++|
T Consensus 363 L~~L~Ls~N~l~~~~~----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-~~L~~L~Ls~N~l~~-l~~~~--~~~L 433 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQK----TGEILLTLKNLTSLDISRNTFH-PMPDSCQWP-EKMRFLNLSSTGIRV-VKTCI--PQTL 433 (549)
T ss_dssp CCEEECTTSCCCCHHH----HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC-TTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred CcEEEccCCccccccc----chhhhhcCCCCCEEECCCCCCc-cCChhhccc-ccccEEECCCCCccc-ccchh--cCCc
Confidence 8888888877765422 1134677788888888888777 455555544 678888888887763 23222 2477
Q ss_pred cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccccC
Q 043347 309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~i 385 (385)
+.|++++|.+++.. ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.|++
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence 77777777776432 46788888888888887 4554 356888888888888888777777888888887764
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=297.99 Aligned_cols=371 Identities=20% Similarity=0.237 Sum_probs=260.4
Q ss_pred CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCCh-hhhcCCCcccEEEccCCcccCcCC-CCccC
Q 043347 2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPD-DMCEGLPRLKGLYVSYNQFKGPIP-NNLWH 79 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 79 (385)
+|.++++|++|++++|.+.+..|..+.++++++ +|++++|.+++.++. .++..+++|++|++++|.+.+..+ ..|..
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF-ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC-CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred HhcCCCCCCEEECCCCcCcccCHhHccCCcccC-EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 478899999999999999877788888999998 799999988865554 346688999999999998876544 46888
Q ss_pred CCCCcEEecccccccccCCCCccCc--cc------------------------------ccEEEeecccccCCCCcccC-
Q 043347 80 CKELSRVSLSFNQFTGRIPRDLGNS--TK------------------------------LKLLYLSFNNLIGEIPQEIG- 126 (385)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~l~~l--~~------------------------------L~~L~l~~~~~~~~~~~~~~- 126 (385)
+++|++|++++|.+.+..+..+..+ ++ |++|++++|.+....+..+.
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 9999999998887765544444333 33 55555555533322222111
Q ss_pred -----------------------------------C--CcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347 127 -----------------------------------S--LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169 (385)
Q Consensus 127 -----------------------------------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 169 (385)
. .++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence 0 145666777666666666666777777778887777776554
Q ss_pred CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccch-----
Q 043347 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS----- 244 (385)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----- 244 (385)
+.. +..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..+.
T Consensus 307 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~ 384 (844)
T 3j0a_A 307 DEA--FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384 (844)
T ss_dssp TTT--TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCS
T ss_pred hHH--hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcc
Confidence 432 6677788888888887776666777777888888888877766666667777777777777776554221
Q ss_pred --------------hh---------------hhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccC
Q 043347 245 --------------EL---------------MSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295 (385)
Q Consensus 245 --------------~~---------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 295 (385)
.. .+....+..+++|+.|++++|.+.+..+.......++++.|++++|.+.
T Consensus 385 ~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp EEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred hhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence 00 0011224467778888888887765444332222367888888888775
Q ss_pred C-----CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347 296 G-----RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI 370 (385)
Q Consensus 296 ~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 370 (385)
. ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+. ++|+.|++++|++++..
T Consensus 465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence 3 3345577788888999999888877777788888999999999988865555543 78889999999888888
Q ss_pred CCccccc
Q 043347 371 PSCLGDL 377 (385)
Q Consensus 371 ~~~~~~l 377 (385)
|..+.++
T Consensus 543 ~~~~~~L 549 (844)
T 3j0a_A 543 PDVFVSL 549 (844)
T ss_dssp SCCCSSC
T ss_pred hhHhCCc
Confidence 8776543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-36 Score=279.21 Aligned_cols=344 Identities=22% Similarity=0.226 Sum_probs=197.6
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
+++++|++++|.+.+..+.++.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+ ++.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLR-ILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCC-EEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhcccccccc-EEecCCCccC-CcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEE
Confidence 5677777777777655555667777777 5777777777 4444444567777777777777663 3323 66777777
Q ss_pred ecccccccc-cCCCCccCcccccEEEeecccccCCCCcccCCCcCC--cEEEeccccc--ccccCccccC----------
Q 043347 87 SLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNL--EILRIDQNNL--VGFIPDTIFN---------- 151 (385)
Q Consensus 87 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~---------- 151 (385)
++++|.+.+ ..|..++++++|++|++++|.+.. ..+..+++| +.|++++|.+ ....+..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 777777664 345667777777777777776653 345556666 7777777766 3333333222
Q ss_pred ----------------CC---------------------------------------------------------CCcEE
Q 043347 152 ----------------MS---------------------------------------------------------TLKTL 158 (385)
Q Consensus 152 ----------------l~---------------------------------------------------------~L~~l 158 (385)
++ +|+.+
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 11 34444
Q ss_pred EccCCcccccCCCCcc---cCCCCCCceEEcccccc--------------------------CCCCCcccccCCcccEEE
Q 043347 159 SLLNNTLSGNLPSSKK---LIGLPNLEGLILGLNNF--------------------------SGSIPSFFFNASKLYYLE 209 (385)
Q Consensus 159 ~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~L~~L~ 209 (385)
++++|.+.+.+|.... ...++.|+.++++.+.+ .... ....+++|++|+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 4444443333332210 02333333333333222 1100 014556666666
Q ss_pred ccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCc-ccccccceeEEE
Q 043347 210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS-IGNLSVSVEEIY 288 (385)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~ 288 (385)
+++|.+.+..+..+..+++|+.|++++|.+...+. .+..+..+++|+.|++++|.+.+..|.. +... +++++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-~~L~~L~ 405 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSK----IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KSLLSLN 405 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH----HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-TTCCEEE
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCcccc----chHHHhhCCCCCEEECCCCcCCcccccchhccC-ccCCEEE
Confidence 66666665555566666667777776666654322 3345666667777777776666534433 2322 5667777
Q ss_pred eeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347 289 MYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 368 (385)
+++|++.+..+..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++++
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 777666554444332 46777777777666 555555566677777777776663222235566677777777766653
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-35 Score=278.67 Aligned_cols=344 Identities=20% Similarity=0.227 Sum_probs=203.3
Q ss_pred cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347 6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR 85 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 85 (385)
|...++++++++.++ .+|..+. ++++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~-~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTK-ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCC-EEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcC-EEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 445577888888777 5666553 5555 6888888887 666656667888888888888777666777778888888
Q ss_pred EecccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCCC--cEEEccC
Q 043347 86 VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL--KTLSLLN 162 (385)
Q Consensus 86 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~l~l~~ 162 (385)
|++++|.+. .+|.. .+++|++|++++|.+.+ ..|..++.+++|++|++++|.+... .+..+++| +.+++++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 888888776 45544 67788888888877765 2346777778888888877776542 23334444 6666666
Q ss_pred Ccc--cccCCCCcc------------------------cCCC--------------------------------------
Q 043347 163 NTL--SGNLPSSKK------------------------LIGL-------------------------------------- 178 (385)
Q Consensus 163 ~~~--~~~~~~~~~------------------------~~~~-------------------------------------- 178 (385)
|.+ .+..+.... +..+
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 655 222111100 0001
Q ss_pred -----------------CCCceEEccccccCCCCCccc------------------------------------------
Q 043347 179 -----------------PNLEGLILGLNNFSGSIPSFF------------------------------------------ 199 (385)
Q Consensus 179 -----------------~~L~~L~l~~~~~~~~~~~~~------------------------------------------ 199 (385)
++|++|++++|.+.+..+..+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 144445555444432222211
Q ss_pred -----------ccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCC
Q 043347 200 -----------FNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268 (385)
Q Consensus 200 -----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (385)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.++..+. ....+..+++|+.|++++|.
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTCTTCCEEECTTSC
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCCCCCCEEECCCCc
Confidence 345566666666666655555556666666666666666554322 23345566666666666666
Q ss_pred CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChh
Q 043347 269 VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPH 348 (385)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 348 (385)
+.+..|.......+++++|++++|++.+..+..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|+++. +|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCH
Confidence 65533433222225666666666666544433332 46666666666665 455545566666666666666663 333
Q ss_pred h-hhcCCCccEEEccCCcccc
Q 043347 349 E-FCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 349 ~-~~~~~~L~~L~l~~~~~~~ 368 (385)
. +..+++|+.|++++|++.+
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCC
T ss_pred HHHhcCCCCCEEEecCCCcCC
Confidence 3 5556666666666666543
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-34 Score=266.76 Aligned_cols=324 Identities=27% Similarity=0.376 Sum_probs=159.2
Q ss_pred cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347 6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR 85 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 85 (385)
++++++|+++++.+. .++ .+..+++++ +|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~-~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLT-QINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCC-EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCC-EEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 455666666666554 333 355555555 5666666665 4443 3456666666666665553322 556666666
Q ss_pred EecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEE---------------------ecccccccc
Q 043347 86 VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILR---------------------IDQNNLVGF 144 (385)
Q Consensus 86 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~---------------------l~~~~~~~~ 144 (385)
|++++|.+.+. + .+..+++|++|++++|.+.+ .+ .+..+++|+.|+ +++|.+...
T Consensus 117 L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 117 LTLFNNQITDI-D-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp EECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence 66666655532 2 25556666666666665542 22 244455555555 444444322
Q ss_pred cCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCccccc
Q 043347 145 IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG 224 (385)
Q Consensus 145 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 224 (385)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+ +.
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred --hhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 223444444444444444432211 23344455555554444321 234444555555555554443222 44
Q ss_pred CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccC
Q 043347 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304 (385)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 304 (385)
.+++|+.|++++|.+...+ .+..+++|+.|++++|.+.+..+ +..+ ++++.|++++|++.+..+ +..
T Consensus 263 ~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp TCTTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSCCSCCGG--GGGC-TTCSEEECCSSCCSCCGG--GGG
T ss_pred cCCCCCEEECCCCccCccc--------cccCCCccCeEEcCCCcccCchh--hcCC-CCCCEEECcCCcCCCchh--hcc
Confidence 4455555555555444321 13444555555555555543322 2222 455555555555543332 344
Q ss_pred CCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347 305 LINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 305 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 368 (385)
+++|+.|++++|.+.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 55555555555555432 234455555555555555554333 4445555555555555543
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=271.95 Aligned_cols=320 Identities=20% Similarity=0.188 Sum_probs=223.9
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
+.++.+++.++ .+|..+. ..++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~-~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETR-LLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCS-EEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCc-EEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 46666666666 5666543 3444 6888888777 5555555677888888888877776667777778888888888
Q ss_pred cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 169 (385)
+|.+....+..+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 77777444445677788888888877777666667777788888888877777666667777778888888777765331
Q ss_pred CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhh
Q 043347 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL 249 (385)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 249 (385)
+ ..+..+++|+.|+++++.+.......+..+++|++|++++|...+..+.......+|+.|++++|.++..+.
T Consensus 169 ~--~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----- 241 (477)
T 2id5_A 169 T--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY----- 241 (477)
T ss_dssp H--HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH-----
T ss_pred h--hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH-----
Confidence 1 225667777888887777766556667777778888877766544444444444577778887777765432
Q ss_pred hHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccC
Q 043347 250 FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL 329 (385)
Q Consensus 250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 329 (385)
..+..+++|+.|++++|.+.+..+..+..+ +++++|++++|++.+..+.++..+++|+.|++++|.+++..+..+..+
T Consensus 242 -~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 242 -LAVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp -HHHTTCTTCCEEECCSSCCCEECTTSCTTC-TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred -HHhcCccccCeeECCCCcCCccChhhcccc-ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 356677777777777777776655555555 677777777777776666777777777777777777775555566677
Q ss_pred CCCCeEeccCCccc
Q 043347 330 KKLQGLDLQNNKFE 343 (385)
Q Consensus 330 ~~L~~L~l~~~~~~ 343 (385)
++|+.|++++|.+.
T Consensus 320 ~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 320 GNLETLILDSNPLA 333 (477)
T ss_dssp GGCCEEECCSSCEE
T ss_pred cccCEEEccCCCcc
Confidence 77777777777765
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=270.84 Aligned_cols=320 Identities=18% Similarity=0.159 Sum_probs=275.7
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++.++..++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 6888888888 8887663 58999999999999887889999999999999999998777889999999999999999
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+.. +..+++|++|++++|.+....
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA--FSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS--STTCTTCCEEEEESCCCSSCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh--ccCCCCCCEEECCCCcCcccC
Confidence 988666667889999999999999998888888999999999999999887654433 778999999999999988776
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (385)
...+..+++|+.|++++|.+....+..+..+++|+.|++++|...... ........+|+.|++++|.+.+..+.
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM------TPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE------CTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc------CcccccCccccEEECcCCcccccCHH
Confidence 777889999999999999998777778899999999999997654332 12333445899999999998865444
Q ss_pred cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCC
Q 043347 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR 355 (385)
Q Consensus 276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (385)
.+... ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++
T Consensus 243 ~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 243 AVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 55555 89999999999998877888899999999999999999888889999999999999999999777777888999
Q ss_pred ccEEEccCCcccc
Q 043347 356 LYKFYLNRNKLSG 368 (385)
Q Consensus 356 L~~L~l~~~~~~~ 368 (385)
|+.|++++|++..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 9999999998764
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.3e-34 Score=262.88 Aligned_cols=307 Identities=28% Similarity=0.385 Sum_probs=251.1
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (385)
+..+++|++|++++|.+.+ ++. +.++++++ +|+++++.++ .++. +..+++|++|++++|.+.+.. .+..+++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~-~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~ 135 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLV-DILMNNNQIA-DITP--LANLTNLTGLTLFNNQITDID--PLKNLTN 135 (466)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC-EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred hhhhcCCCEEECCCCccCC-chh-hhccccCC-EEECCCCccc-cChh--hcCCCCCCEEECCCCCCCCCh--HHcCCCC
Confidence 4568899999999998884 444 78888888 7999999888 5555 558899999999998887543 2788888
Q ss_pred CcEEecccccccccC-------------------CCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc
Q 043347 83 LSRVSLSFNQFTGRI-------------------PRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG 143 (385)
Q Consensus 83 L~~L~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 143 (385)
|++|++++|.+.... ...+.++++|++|++++|.+... ..+..+++|+.|++++|.+..
T Consensus 136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 888888888765311 11256678888999988887633 357889999999999999876
Q ss_pred ccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccc
Q 043347 144 FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL 223 (385)
Q Consensus 144 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 223 (385)
..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+....+ +
T Consensus 214 ~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~ 283 (466)
T 1o6v_A 214 ITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 283 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred ccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c
Confidence 544 67899999999999988643 236789999999999999875443 7889999999999999886543 7
Q ss_pred cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc
Q 043347 224 GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG 303 (385)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~ 303 (385)
..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+ +++++|++++|++.+. ..+.
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDIS--------PISNLKNLTYLTLYFNNISDISP--VSSL-TKLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCG--------GGGGCTTCSEEECCSSCCSCCGG--GGGC-TTCCEEECCSSCCCCC--GGGT
T ss_pred cCCCccCeEEcCCCcccCch--------hhcCCCCCCEEECcCCcCCCchh--hccC-ccCCEeECCCCccCCc--hhhc
Confidence 88999999999999988653 27789999999999999987765 4444 8999999999999864 4688
Q ss_pred CCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347 304 NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG 344 (385)
Q Consensus 304 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 344 (385)
.+++|+.|++++|.+.+..| +..+++|+.|++++|.+++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999999986665 8899999999999999985
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-35 Score=279.98 Aligned_cols=183 Identities=18% Similarity=0.136 Sum_probs=150.5
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
++|++|++++|.+.+..+..+.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQ-VLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCC-EEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCccc-EEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 5799999999999877778888999999 7999999998 6666666789999999999999987766668899999999
Q ss_pred ecccccccc-cCCCCccCcccccEEEeecccccCCC-CcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCc
Q 043347 87 SLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEI-PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNT 164 (385)
Q Consensus 87 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 164 (385)
++++|.+.+ ..+..+.++++|++|++++|...+.+ +..+..+++|++|++++|.+....+..+..+++|++++++.+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999998875 34567889999999999998743344 4578899999999999999988888889999999999999887
Q ss_pred ccccCCCCcccCCCCCCceEEccccccCC
Q 043347 165 LSGNLPSSKKLIGLPNLEGLILGLNNFSG 193 (385)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 193 (385)
... .+.. .+..+++|++|++++|.+.+
T Consensus 184 ~~~-~~~~-~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 184 SAF-LLEI-FADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp STT-HHHH-HHHSTTTBSEEEEESCBCTT
T ss_pred ccc-cchh-hHhhcccccEEEccCCcccc
Confidence 642 2221 13467899999999988764
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=271.52 Aligned_cols=354 Identities=19% Similarity=0.244 Sum_probs=240.3
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
++++++++.++ .+|..+. ++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~-~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTT-ILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCS-EEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--cccc-EEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 57999999998 7888776 6777 8999999999 7777677799999999999999997778899999999999999
Q ss_pred cccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCCC--cEEEccCCcc-
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL--KTLSLLNNTL- 165 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~l~l~~~~~- 165 (385)
+|.+. .+|.. .+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.. ..+..+++| +.+++++|.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 99988 55655 89999999999999986 467899999999999999999875 356677788 9999999887
Q ss_pred -cccCCCCc------------------------ccCCCC-----------------------------------------
Q 043347 166 -SGNLPSSK------------------------KLIGLP----------------------------------------- 179 (385)
Q Consensus 166 -~~~~~~~~------------------------~~~~~~----------------------------------------- 179 (385)
.+..|... .+..++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 33322210 011122
Q ss_pred ----------------CCceEEccccccCCCCCccc-----ccCCcccEEEccCccccccCccc----------------
Q 043347 180 ----------------NLEGLILGLNNFSGSIPSFF-----FNASKLYYLELAYNSFSGLIPKA---------------- 222 (385)
Q Consensus 180 ----------------~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~---------------- 222 (385)
+|++|++++|.+.+..+..+ ..+++|+.+++++|.+ ......
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcC
Confidence 34444444444433333333 3333333333333332 000000
Q ss_pred ---------ccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC--CCCCcccccccceeEEEeec
Q 043347 223 ---------LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG--VLPSSIGNLSVSVEEIYMYK 291 (385)
Q Consensus 223 ---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~ 291 (385)
...+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+ ..|..+..+ +++++|++++
T Consensus 311 ~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~ 383 (520)
T 2z7x_B 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDT------VFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQ 383 (520)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTT------TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCS
T ss_pred CCccccccchhhCCcccEEEeECCccChh------hhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCC
Confidence 13455566666666655542 12345556666666666666654 222334444 5666666666
Q ss_pred cccCCCCCc-cccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347 292 CNIHGRIPK-EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI 370 (385)
Q Consensus 292 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 370 (385)
|++.+..|. .+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence 666653332 355566667777776666554444332 67888888888887 67776678899999999999988433
Q ss_pred CCcccccccCccccC
Q 043347 371 PSCLGDLNSLRILSL 385 (385)
Q Consensus 371 ~~~~~~l~~L~~l~i 385 (385)
+..+..+++|+.|++
T Consensus 461 ~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWL 475 (520)
T ss_dssp TTTTTTCTTCCEEEC
T ss_pred HHHhccCCcccEEEC
Confidence 344788888888764
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.6e-34 Score=273.43 Aligned_cols=370 Identities=22% Similarity=0.217 Sum_probs=263.2
Q ss_pred cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347 8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS 87 (385)
Q Consensus 8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 87 (385)
++++|+|++|.+++..+.++.++++++ +|++++|.++ .+++++|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~-~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCC-EEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 689999999999855556788999999 7999999998 88888888899999999999999877777889999999999
Q ss_pred cccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCC------------
Q 043347 88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST------------ 154 (385)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~------------ 154 (385)
+++|.+....+..++++++|++|++++|.+.. ..|..++.+++|++|++++|.+....+..+..+.+
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999886656678999999999999998865 35677888999999999998876554433322111
Q ss_pred ---------------CcEEEccCCcccc---------------------------cC-----------------------
Q 043347 155 ---------------LKTLSLLNNTLSG---------------------------NL----------------------- 169 (385)
Q Consensus 155 ---------------L~~l~l~~~~~~~---------------------------~~----------------------- 169 (385)
++.+++..+.... ..
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 1112221110000 00
Q ss_pred --------C--------------------CCcccCCCCCCceEEccccccCCCCC-------------------cccccC
Q 043347 170 --------P--------------------SSKKLIGLPNLEGLILGLNNFSGSIP-------------------SFFFNA 202 (385)
Q Consensus 170 --------~--------------------~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~ 202 (385)
. ....+.....++.+++..+.+..... .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 0 00001122344555555443321111 112345
Q ss_pred CcccEEEccCcccccc--Cccc-----------------------ccCCCCccEEEecCCcccccchhhhhhhHhhhccc
Q 043347 203 SKLYYLELAYNSFSGL--IPKA-----------------------LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCK 257 (385)
Q Consensus 203 ~~L~~L~l~~~~~~~~--~~~~-----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 257 (385)
++++.+++++|.+... .+.. +..+++|+.++++.+....... ...+..++
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-----~~~~~~l~ 445 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLR 445 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS-----SCTTTTCT
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc-----cccccccc
Confidence 6777777777655321 1222 2334455555555443332211 23567778
Q ss_pred CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC-CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347 258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG-RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336 (385)
Q Consensus 258 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 336 (385)
+++.++++.|.+....+..+... ++++.|++++|+... ..|..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 88888888888876666665555 789999999887543 4667788899999999999999887888899999999999
Q ss_pred ccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccccc-ccCccccC
Q 043347 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDL-NSLRILSL 385 (385)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~l~i 385 (385)
+++|++++..+..+..+++|+.|++++|++++..|+.+..+ ++|+.|++
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 99999998888888889999999999999998888888877 67888764
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-33 Score=267.02 Aligned_cols=331 Identities=23% Similarity=0.276 Sum_probs=226.9
Q ss_pred ceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEE
Q 043347 32 SISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLY 111 (385)
Q Consensus 32 ~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 111 (385)
..+ +++++++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|+
T Consensus 32 ~~~-~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 32 LES-MVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp -CC-EEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCc-EEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 334 7999999999 7998764 8999999999999977778999999999999999999987788999999999999
Q ss_pred eecccccCCCCcccCCCcCCcEEEecccccccc-cCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC--ceEEccc
Q 043347 112 LSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL--EGLILGL 188 (385)
Q Consensus 112 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~ 188 (385)
+++|.+. .+|.. .+++|++|++++|.+... .+..+..+++|++|++++|.+... .+..+++| ++|++++
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEE
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeec
Confidence 9999988 55555 799999999999999864 357899999999999999988642 14445555 9999998
Q ss_pred ccc--CCCCCcccccC--------------------------C-------------------------------------
Q 043347 189 NNF--SGSIPSFFFNA--------------------------S------------------------------------- 203 (385)
Q Consensus 189 ~~~--~~~~~~~~~~~--------------------------~------------------------------------- 203 (385)
|.+ ....+..+..+ +
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 877 43333333321 2
Q ss_pred ------------------cccEEEccCccccccCcccc------------------------------------------
Q 043347 204 ------------------KLYYLELAYNSFSGLIPKAL------------------------------------------ 223 (385)
Q Consensus 204 ------------------~L~~L~l~~~~~~~~~~~~~------------------------------------------ 223 (385)
+|++|++++|.+.+..+..+
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 45555555555543333222
Q ss_pred -----------cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC--CCcccccccceeEEEee
Q 043347 224 -----------GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL--PSSIGNLSVSVEEIYMY 290 (385)
Q Consensus 224 -----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~ 290 (385)
..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+.. +..+..+ +++++|+++
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~ 411 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDS------VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVS 411 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTT------TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECT
T ss_pred cCCCcccccCccCCCCceEEECCCCccccc------hhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECC
Confidence 3344455555555544432 1234455555555555555554321 1223333 455666666
Q ss_pred ccccCCCCC-ccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCccccc
Q 043347 291 KCNIHGRIP-KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGS 369 (385)
Q Consensus 291 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 369 (385)
+|++.+..+ ..+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence 665554222 2345556666666666665544433332 57888888888777 5666556888889999998888843
Q ss_pred CCCcccccccCccccC
Q 043347 370 IPSCLGDLNSLRILSL 385 (385)
Q Consensus 370 ~~~~~~~l~~L~~l~i 385 (385)
.+..+..+++|+.+++
T Consensus 489 ~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CTTSTTTCTTCCCEEC
T ss_pred CHHHHhcCCCCCEEEe
Confidence 3334778888887754
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-33 Score=252.80 Aligned_cols=312 Identities=20% Similarity=0.203 Sum_probs=262.2
Q ss_pred cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccccc
Q 043347 29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLK 108 (385)
Q Consensus 29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 108 (385)
.+.+++ .++++++.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|+
T Consensus 43 ~l~~l~-~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQK-IVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCS-EEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCce-EEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 456677 7999999998 88998888899999999999999877777899999999999999999877777889999999
Q ss_pred EEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccc
Q 043347 109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL 188 (385)
Q Consensus 109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (385)
+|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... + +..+++|+.++++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C----GGGCTTCSEEECCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c----cccccccceeeccc
Confidence 999999998854444578899999999999999877778889999999999999988643 1 55688999999998
Q ss_pred cccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCC
Q 043347 189 NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268 (385)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (385)
+.+.. +...+++++|++++|.+..... ...++|+.|++++|.++.. ..+..+++|+.|++++|.
T Consensus 196 n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 196 NLLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp SCCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSC
T ss_pred ccccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCc
Confidence 87652 3445689999999998875432 2357899999999988764 357888999999999999
Q ss_pred CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChh
Q 043347 269 VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPH 348 (385)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 348 (385)
+.+..+..+... +++++|++++|++.+ .+..+..+++|++|++++|.+. .++..+..+++|+.|++++|++++. +
T Consensus 260 l~~~~~~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~- 334 (390)
T 3o6n_A 260 LEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K- 334 (390)
T ss_dssp CCEEESGGGTTC-SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred CCCcChhHcccc-ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-
Confidence 988877777777 799999999999875 4555677899999999999998 6677788899999999999999854 3
Q ss_pred hhhcCCCccEEEccCCccccc
Q 043347 349 EFCHFSRLYKFYLNRNKLSGS 369 (385)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~ 369 (385)
+..+++|+.|++++|++.+.
T Consensus 335 -~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEHH
T ss_pred -chhhccCCEEEcCCCCccch
Confidence 56689999999999998753
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-32 Score=244.93 Aligned_cols=306 Identities=23% Similarity=0.321 Sum_probs=181.8
Q ss_pred ccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccc
Q 043347 28 FNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKL 107 (385)
Q Consensus 28 ~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 107 (385)
..+++++ .|+++++.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. . ..+..+++|
T Consensus 41 ~~l~~L~-~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 41 EELESIT-KLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HHHTTCS-EEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred hhccccc-EEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 3455555 5666666665 4443 3356666666666666553222 5566666666666665552 2 245566666
Q ss_pred cEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347 108 KLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG 187 (385)
Q Consensus 108 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (385)
++|++++|.+.+ .+. +..+++|+.|++++|...... ..+..+++|+++++++|.+....+ +..+++|++|+++
T Consensus 113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLN 185 (347)
T ss_dssp SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECT
T ss_pred CEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEcc
Confidence 666666666552 222 556666666666666433222 225566666666666665543211 4456666666666
Q ss_pred ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCC
Q 043347 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN 267 (385)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (385)
+|.+.+... +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+...+ .+..+++|+.|++++|
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--------PLANLSQLTWLEIGTN 253 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSS
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc--------chhcCCCCCEEECCCC
Confidence 666553222 5566666677766666654322 556666777777776665532 1556666777777766
Q ss_pred CCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCCh
Q 043347 268 PVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP 347 (385)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 347 (385)
.+.+. +.+... +++++|++++|++.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+
T Consensus 254 ~l~~~--~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 254 QISDI--NAVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCCC--GGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ccCCC--hhHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 66543 223333 5677777777766543 346667777777777777776666677777777777777777775444
Q ss_pred hhhhcCCCccEEEccCCccc
Q 043347 348 HEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~ 367 (385)
+..+++|++|++++|+++
T Consensus 329 --~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 --LASLSKMDSADFANQVIK 346 (347)
T ss_dssp --GGGCTTCSEESSSCC---
T ss_pred --hhhhhccceeehhhhccc
Confidence 566777777777777764
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6e-33 Score=246.40 Aligned_cols=306 Identities=24% Similarity=0.382 Sum_probs=257.6
Q ss_pred CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347 4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL 83 (385)
Q Consensus 4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 83 (385)
..+++|++|+++++.+. .++ .+..+++++ +|++++|.++ .++. +..+++|++|++++|.+... ..+..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~-~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQ-GIEYLTNLE-YLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCT-TGGGCTTCC-EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred hhcccccEEEEeCCccc-cch-hhhhcCCcc-EEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 46889999999999987 454 488899999 7999999999 6666 56899999999999988743 468999999
Q ss_pred cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347 84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163 (385)
Q Consensus 84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 163 (385)
++|++++|.+... +. +..+++|++|++++|...... ..+..+++|+.|++++|.+....+ +..+++|+.+++++|
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 9999999998743 33 889999999999999766444 448999999999999999875433 789999999999999
Q ss_pred cccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347 164 TLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243 (385)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 243 (385)
.+....+ +..+++|+.++++++.+.+... +..+++|++|++++|.+....+ +..+++|+.|++++|.+...
T Consensus 188 ~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 188 QIEDISP----LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp CCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred ccccccc----ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 8864322 6688999999999998875433 7889999999999999986543 88999999999999988864
Q ss_pred hhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCc
Q 043347 244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP 323 (385)
Q Consensus 244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 323 (385)
..+..+++|+.|++++|.+.+. ..+... +++++|++++|++.+..+..+..+++|++|++++|.+++..+
T Consensus 259 -------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 259 -------NAVKDLTKLKMLNVGSNQISDI--SVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp -------GGGTTCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred -------hhHhcCCCcCEEEccCCccCCC--hhhcCC-CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 3578899999999999998865 334544 899999999999998888889999999999999999986555
Q ss_pred cccccCCCCCeEeccCCccc
Q 043347 324 ITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 324 ~~~~~~~~L~~L~l~~~~~~ 343 (385)
+..+++|+.|++++|.++
T Consensus 329 --~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 --LASLSKMDSADFANQVIK 346 (347)
T ss_dssp --GGGCTTCSEESSSCC---
T ss_pred --hhhhhccceeehhhhccc
Confidence 888999999999999886
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-32 Score=259.17 Aligned_cols=311 Identities=20% Similarity=0.203 Sum_probs=263.8
Q ss_pred cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccccc
Q 043347 29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLK 108 (385)
Q Consensus 29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 108 (385)
.+.++. .++++++.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..++++++|+
T Consensus 49 ~l~~l~-~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQK-IVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCS-EEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCce-EEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 345566 7999999998 88998888899999999999999877778999999999999999999877777889999999
Q ss_pred EEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccc
Q 043347 109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL 188 (385)
Q Consensus 109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 188 (385)
+|++++|.+....+..|+.+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. + +..+++|+.+++++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVSY 201 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C----GGGCTTCSEEECCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C----hhhhhhhhhhhccc
Confidence 999999998855555578999999999999999888888899999999999999988643 2 55688999999998
Q ss_pred cccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCC
Q 043347 189 NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268 (385)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (385)
|.+.. +...++|+.|++++|.+...... ..++|+.|++++|.++.. ..+..+++|+.|++++|.
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSC
T ss_pred Ccccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCc
Confidence 87653 34567899999999988754332 237899999999988763 467889999999999999
Q ss_pred CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChh
Q 043347 269 VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPH 348 (385)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 348 (385)
+.+..|..+..+ ++|+.|++++|.+.+ ++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. +
T Consensus 266 l~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~- 340 (597)
T 3oja_B 266 LEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K- 340 (597)
T ss_dssp CCEEESGGGTTC-SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred cCCCCHHHhcCc-cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-
Confidence 998888888777 899999999999885 4556677899999999999998 6777788899999999999999854 3
Q ss_pred hhhcCCCccEEEccCCcccc
Q 043347 349 EFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~ 368 (385)
+..+++|+.|++++|++.+
T Consensus 341 -~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCTTCCCSEEECCSSCEEH
T ss_pred -hhhcCCCCEEEeeCCCCCC
Confidence 5668999999999998865
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.9e-32 Score=244.26 Aligned_cols=304 Identities=19% Similarity=0.222 Sum_probs=257.5
Q ss_pred CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347 55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL 134 (385)
Q Consensus 55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 134 (385)
.+++++.++++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 47899999999999886655567899999999999999987777789999999999999999997778889999999999
Q ss_pred EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc
Q 043347 135 RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214 (385)
Q Consensus 135 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (385)
++++|.+....+..+..+++|++|++++|.+....+.. +..+++|++|++++|.++.. .+..+++|+.+++++|.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh--ccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 99999998665566789999999999999987654433 77899999999999988754 35678899999999997
Q ss_pred ccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347 215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294 (385)
Q Consensus 215 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 294 (385)
+.. +...++|+.|++++|.+...+. ...++|+.|++++|.+.+. ..+... +++++|++++|.+
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNEL 260 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCC
T ss_pred ccc-----cCCCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCccc--HHHcCC-CCccEEECCCCcC
Confidence 764 2345789999999999877533 2247999999999999864 455555 8999999999999
Q ss_pred CCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcc
Q 043347 295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL 374 (385)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (385)
.+..+..+..+++|++|++++|.+. .++..+..+++|+.|++++|+++ ..+..+..+++|+.|++++|+++... +
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~ 335 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---L 335 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred CCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---c
Confidence 9888888999999999999999998 45666678999999999999998 67777888999999999999998553 5
Q ss_pred cccccCccccC
Q 043347 375 GDLNSLRILSL 385 (385)
Q Consensus 375 ~~l~~L~~l~i 385 (385)
..+++|+.|++
T Consensus 336 ~~~~~L~~L~l 346 (390)
T 3o6n_A 336 STHHTLKNLTL 346 (390)
T ss_dssp CTTCCCSEEEC
T ss_pred hhhccCCEEEc
Confidence 56777777654
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.6e-32 Score=260.10 Aligned_cols=358 Identities=22% Similarity=0.241 Sum_probs=266.5
Q ss_pred CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347 2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81 (385)
Q Consensus 2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 81 (385)
+|.++++|++|+|++|.+.+..+.++.++++++ +|++++|+++ .+|.++|..+++|++|++++|.+.+..+..|..++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~-~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS-TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC-EEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC-EEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 588999999999999999855566788999999 7999999999 88999888999999999999999977777899999
Q ss_pred CCcEEecccccccc-cCCCCccCcccccEEEeecccccCCCCcccCCCcC---------------------------CcE
Q 043347 82 ELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRN---------------------------LEI 133 (385)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---------------------------L~~ 133 (385)
+|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+.+ ++.
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 99999999998874 35677889999999999999876544443322111 112
Q ss_pred EEeccccccc-------------------------------c--------------------------------------
Q 043347 134 LRIDQNNLVG-------------------------------F-------------------------------------- 144 (385)
Q Consensus 134 L~l~~~~~~~-------------------------------~-------------------------------------- 144 (385)
+++.++.... .
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 2221110000 0
Q ss_pred -----------cCccccCCCCCcEEEccCCcccccCC-----------------CCcccCCCCCCceEEccccccCC---
Q 043347 145 -----------IPDTIFNMSTLKTLSLLNNTLSGNLP-----------------SSKKLIGLPNLEGLILGLNNFSG--- 193 (385)
Q Consensus 145 -----------~~~~~~~l~~L~~l~l~~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~~~~~~--- 193 (385)
....+.....++.+++.++.+..... .......++.|+.++++.+.+..
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 00001122345556555554322110 00112345677777777665421
Q ss_pred ----------------------CCCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecCCcccccchhhhhhh
Q 043347 194 ----------------------SIPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSSTSELMSLF 250 (385)
Q Consensus 194 ----------------------~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 250 (385)
.....+..+++++.+++.++..... ....+..+++++.++++.|.+.....
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~------ 462 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------ 462 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT------
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccc------
Confidence 1122344567777788777665433 33567788999999999998876643
Q ss_pred HhhhcccCceEEEccCCCCC-CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccC
Q 043347 251 SALVNCKSLKVIVLAENPVD-GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL 329 (385)
Q Consensus 251 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 329 (385)
..+..++.++.|++++|... ...|..+..+ +++++|++++|++.+..|.+|.++++|++|++++|.+++..+..+..+
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 45778899999999999754 3456666666 899999999999998889999999999999999999998888889999
Q ss_pred CCCCeEeccCCcccCCChhhhhcC-CCccEEEccCCcccc
Q 043347 330 KKLQGLDLQNNKFEGPIPHEFCHF-SRLYKFYLNRNKLSG 368 (385)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 368 (385)
++|+.|++++|++++..+..+..+ ++|+.|++++|++.+
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999998888888887 689999999998764
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.2e-31 Score=251.44 Aligned_cols=304 Identities=19% Similarity=0.223 Sum_probs=259.3
Q ss_pred CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347 55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL 134 (385)
Q Consensus 55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 134 (385)
.+++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999886666668889999999999999997777799999999999999999998778889999999999
Q ss_pred EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc
Q 043347 135 RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214 (385)
Q Consensus 135 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (385)
++++|.+....+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+... .+..+++|+.+++++|.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh--hhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 99999998766666789999999999999988655433 77899999999999988754 35667899999999997
Q ss_pred ccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347 215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294 (385)
Q Consensus 215 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 294 (385)
+.. +...++|+.|++++|.+...+.. ..++|+.|++++|.+.+. ..+..+ ++|+.|++++|.+
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~---------~~~~L~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l 266 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRGP---------VNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNEL 266 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEECS---------CCSCCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCC
T ss_pred ccc-----ccCCchhheeeccCCcccccccc---------cCCCCCEEECCCCCCCCC--hhhccC-CCCCEEECCCCcc
Confidence 764 34567899999999998765431 236899999999999863 556666 8999999999999
Q ss_pred CCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcc
Q 043347 295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL 374 (385)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (385)
.+..|..+..+++|+.|++++|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++... +
T Consensus 267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~ 341 (597)
T 3oja_B 267 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---L 341 (597)
T ss_dssp CEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred CCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---h
Confidence 98888899999999999999999984 5666778999999999999998 67888888999999999999998553 4
Q ss_pred cccccCccccC
Q 043347 375 GDLNSLRILSL 385 (385)
Q Consensus 375 ~~l~~L~~l~i 385 (385)
..+++|+.|++
T Consensus 342 ~~~~~L~~L~l 352 (597)
T 3oja_B 342 STHHTLKNLTL 352 (597)
T ss_dssp CTTCCCSEEEC
T ss_pred hhcCCCCEEEe
Confidence 55667776653
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=4.4e-31 Score=241.54 Aligned_cols=326 Identities=18% Similarity=0.158 Sum_probs=248.6
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (385)
+.++++|++|++++|.+.+ +| .+..+++++ +|++++|.++ .++ +..+++|++|++++|.+.+. .+..+++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~-~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITD-MT-GIEKLTGLT-KLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DVTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSCCCC-CT-TGGGCTTCS-EEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CCTTCTT
T ss_pred hhHcCCCCEEEccCCCccc-Ch-hhcccCCCC-EEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ecCCCCc
Confidence 4568899999999999984 45 688888998 7999999998 565 45789999999999998864 2788999
Q ss_pred CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccC
Q 043347 83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLN 162 (385)
Q Consensus 83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 162 (385)
|++|++++|.+.+ .+ +..+++|++|++++|.+.+. .++.+++|+.|++++|...... .+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 9999999998874 33 78899999999999988753 3788999999999998544333 477889999999999
Q ss_pred CcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347 163 NTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242 (385)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 242 (385)
|.+.+ ++ +..+++|+.|++++|.+++. .+..+++|++|++++|++.+. + +..+++|+.|++++|.++..
T Consensus 180 n~l~~-l~----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 180 NKITE-LD----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SCCCC-CC----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC
T ss_pred Cccce-ec----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCc
Confidence 98875 33 56788999999999988754 377889999999999998864 3 77889999999999988875
Q ss_pred chhhhhhhHhhhcccCc----------eEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc--------cccC
Q 043347 243 TSELMSLFSALVNCKSL----------KVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK--------EIGN 304 (385)
Q Consensus 243 ~~~~~~~~~~~~~~~~L----------~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--------~~~~ 304 (385)
+. ..+++| +.+++++|...+..| ... .++++.|++++|...+.+|. .+..
T Consensus 249 ~~---------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 249 DV---------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEG-CRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CC---------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTT-CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred CH---------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccc-cccCCEEECCCCcccceeccCCCcceEechhh
Confidence 32 233444 444555554444333 122 27888888888875543322 2556
Q ss_pred CCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhh-------------cCCCccEEEccCCcccccCC
Q 043347 305 LINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFC-------------HFSRLYKFYLNRNKLSGSIP 371 (385)
Q Consensus 305 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~L~~L~l~~~~~~~~~~ 371 (385)
+++|++|++++|.+++ + .+..+++|+.|++++|++++. + .+. .+..|..+++++|++++.+|
T Consensus 317 ~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECC
T ss_pred cccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEcC
Confidence 7889999999999886 3 278889999999999988752 1 111 23456778888888888887
Q ss_pred Ccc
Q 043347 372 SCL 374 (385)
Q Consensus 372 ~~~ 374 (385)
..+
T Consensus 392 ~~~ 394 (457)
T 3bz5_A 392 PDL 394 (457)
T ss_dssp TTC
T ss_pred hhH
Confidence 654
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=5.2e-30 Score=234.27 Aligned_cols=325 Identities=23% Similarity=0.287 Sum_probs=151.0
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccce------------eceeEeecCccccCCChhhhcCCCcccEEEccCCccc
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSI------------STGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFK 70 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l------------~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 70 (385)
|.++++|++|++++|.+.+.+|.+++++..+ .++|+++++.++ .+|. ..++|++|++++|.+.
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT 104 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCC
Confidence 4455555555555555555555555444433 114555555554 3333 1245555555555554
Q ss_pred CcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCcccc
Q 043347 71 GPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF 150 (385)
Q Consensus 71 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 150 (385)
+ ++.. .++|++|++++|.+.+ ++.. .++|++|++++|.+.+ +| .++.+++|++|++++|.++. .+..
T Consensus 105 ~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-- 171 (454)
T 1jl5_A 105 E-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-- 171 (454)
T ss_dssp S-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--
T ss_pred c-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--
Confidence 3 2211 2445555555544431 1111 1455555555555542 33 35555555555555555442 2221
Q ss_pred CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCcc
Q 043347 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE 230 (385)
Q Consensus 151 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 230 (385)
.++|++|++++|.+.+ +|. +..+++|++|++++|.+.+. +.. .++|++|++++|.+.. .+ .++.+++|+
T Consensus 172 -~~~L~~L~L~~n~l~~-l~~---~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~~-lp-~~~~l~~L~ 240 (454)
T 1jl5_A 172 -PPSLEFIAAGNNQLEE-LPE---LQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILEE-LP-ELQNLPFLT 240 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CCC---CTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred -cccccEEECcCCcCCc-Ccc---ccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCCc-cc-ccCCCCCCC
Confidence 1355555555555443 221 34455555555555544421 111 1344555555544442 22 244445555
Q ss_pred EEEecCCcccccchhhhh-------------hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC
Q 043347 231 RLGLQSNYLTSSTSELMS-------------LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR 297 (385)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 297 (385)
.|++++|.+...+..... +. ...++|+.|++++|.+.+.. ..+++++.|++++|++.+
T Consensus 241 ~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~---~~~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~- 311 (454)
T 1jl5_A 241 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP---ELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRS- 311 (454)
T ss_dssp EEECCSSCCSSCCSCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSE-
T ss_pred EEECCCCcCCcccccccccCEEECCCCcccccC---cccCcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCc-
Confidence 555555444432210000 00 01134555555555444311 111344444444444432
Q ss_pred CCccccCC-CCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc--cCCCcc
Q 043347 298 IPKEIGNL-INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG--SIPSCL 374 (385)
Q Consensus 298 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~ 374 (385)
+..+ ++|++|++++|.+.+ +|.. +++|+.|++++|+++ .+|. .+++|+.|++++|++++ .+|..+
T Consensus 312 ----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 312 ----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp ----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred ----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence 1122 367777777777663 4432 467777777777776 3444 35677777777777776 566666
Q ss_pred ccc
Q 043347 375 GDL 377 (385)
Q Consensus 375 ~~l 377 (385)
.++
T Consensus 380 ~~L 382 (454)
T 1jl5_A 380 EDL 382 (454)
T ss_dssp CEE
T ss_pred Hhh
Confidence 655
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.2e-30 Score=233.95 Aligned_cols=309 Identities=21% Similarity=0.167 Sum_probs=248.4
Q ss_pred cCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCC
Q 043347 20 TGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPR 99 (385)
Q Consensus 20 ~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 99 (385)
.+..+.++.++++++ +|+++++.++ .+| . +..+++|++|++++|.+.+. + +..+++|++|++++|.+.+. +
T Consensus 31 ~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLT-SLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp CTTSEEEHHHHTTCC-EEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CcccccChhHcCCCC-EEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence 334556778899999 7999999999 566 3 45899999999999999864 2 88999999999999998853 3
Q ss_pred CccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCC
Q 043347 100 DLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179 (385)
Q Consensus 100 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 179 (385)
+..+++|++|++++|.+.+ ++ ++.+++|+.|++++|.++.. .+..+++|+++++++|...+.+ .+..++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~----~~~~l~ 170 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL----DVTPQT 170 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC----CCTTCT
T ss_pred -cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc----ccccCC
Confidence 8899999999999999885 33 88999999999999998864 3788999999999999654443 266889
Q ss_pred CCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCc
Q 043347 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSL 259 (385)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 259 (385)
+|++|++++|.+++. + +..+++|+.|++++|.++.. .+..+++|+.|++++|.++..+ +..+++|
T Consensus 171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L 235 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---------VTPLTQL 235 (457)
T ss_dssp TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---------CTTCTTC
T ss_pred cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---------ccccCCC
Confidence 999999999998863 2 77889999999999999865 3788999999999999988742 6778999
Q ss_pred eEEEccCCCCCCCCCCcccccc------cceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcc--------c
Q 043347 260 KVIVLAENPVDGVLPSSIGNLS------VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPI--------T 325 (385)
Q Consensus 260 ~~L~l~~~~~~~~~~~~~~~~~------~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~ 325 (385)
+.|++++|.+.+..+..+..+. .+++.+++++|...+.+| ++.+++|+.|++++|...+.++. .
T Consensus 236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 9999999999876543332210 134445555555444333 46789999999999976554432 2
Q ss_pred cccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347 326 LGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 326 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 368 (385)
+..+++|+.|++++|++++. + +..+++|+.|++++|++++
T Consensus 314 l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 45678999999999999974 3 7889999999999999986
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-29 Score=222.24 Aligned_cols=288 Identities=20% Similarity=0.229 Sum_probs=174.2
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 35 ~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 35 VVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 6777777777 666644 256777888887777666667777788888888877777666777777778888888777
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+. .+|..+. ++|+.|++++|.+....+..+..+++|+.+++++|.+...-.....+..+++|++|+++++.+....
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 766 4444433 5777777777777655555566777777777777665421001112444555555555555544221
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (385)
.. + .++|++|++++|.+....+..+..+ ++|+.|++++|.+.+..+.
T Consensus 188 ~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l------------------------------~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 188 QG-L--PPSLTELHLDGNKITKVDAASLKGL------------------------------NNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp SS-C--CTTCSEEECTTSCCCEECTGGGTTC------------------------------TTCCEEECCSSCCCEECTT
T ss_pred cc-c--cccCCEEECCCCcCCccCHHHhcCC------------------------------CCCCEEECCCCcCceeChh
Confidence 11 1 1344445554444443333444444 4444444444444444333
Q ss_pred cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc------CCCCCeEeccCCcccC--CCh
Q 043347 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR------LKKLQGLDLQNNKFEG--PIP 347 (385)
Q Consensus 276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~ 347 (385)
.+... +++++|++++|++. .+|..+..+++|++|++++|.+++..+..+.. .+.++.+++++|.+.. ..+
T Consensus 235 ~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 235 SLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp TGGGS-TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred hccCC-CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 34333 45556666665555 45555667777888888888777554444432 3677888888887643 556
Q ss_pred hhhhcCCCccEEEccCCc
Q 043347 348 HEFCHFSRLYKFYLNRNK 365 (385)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~ 365 (385)
..+..+++++.+++++|+
T Consensus 313 ~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGTTCCCGGGEEC----
T ss_pred cccccccceeEEEecccC
Confidence 677778888888888874
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.4e-34 Score=263.64 Aligned_cols=361 Identities=18% Similarity=0.115 Sum_probs=268.0
Q ss_pred cCcccEEEecCccccCCCCcc-cccccceeceeEeecCccccCC---ChhhhcCCCcccEEEccCCcccCcCCCCc-cCC
Q 043347 6 LAELEVLVLNNNLLTGTIPAS-IFNLSSISTGLDFSNNSLTGSF---PDDMCEGLPRLKGLYVSYNQFKGPIPNNL-WHC 80 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~l~~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 80 (385)
.+++++|+++++.+.+..... +..+++++ .|++++|.+++.. -..++..+++|++|++++|.+.+.....+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~-~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQ-VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCS-EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCcc-EEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 468999999999987544333 67788888 7999999987321 12344578999999999998864332222 233
Q ss_pred C----CCcEEecccccccc----cCCCCccCcccccEEEeecccccCCCCccc-----CCCcCCcEEEeccccccccc--
Q 043347 81 K----ELSRVSLSFNQFTG----RIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-----GSLRNLEILRIDQNNLVGFI-- 145 (385)
Q Consensus 81 ~----~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~-- 145 (385)
+ +|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 3 79999999998874 346778899999999999998765433332 23568999999999887643
Q ss_pred --CccccCCCCCcEEEccCCcccccCCCCc---ccCCCCCCceEEccccccCCC----CCcccccCCcccEEEccCcccc
Q 043347 146 --PDTIFNMSTLKTLSLLNNTLSGNLPSSK---KLIGLPNLEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFS 216 (385)
Q Consensus 146 --~~~~~~l~~L~~l~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 216 (385)
+..+..+++|++|++++|.+.+...... .....++|++|++++|.++.. .+..+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 4556678999999999998754211110 011356899999999988753 3556677899999999999876
Q ss_pred ccCc-----ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccc----cccceeEE
Q 043347 217 GLIP-----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN----LSVSVEEI 287 (385)
Q Consensus 217 ~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~L 287 (385)
+... ..+..+++|+.|++++|.++.... ..+...+..+++|+.|++++|.+.+..+..+.. ..+++++|
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 5432 223357899999999998875432 224456788999999999999886544333322 12589999
Q ss_pred EeeccccCCC----CCccccCCCCccEEECcCccccCCCcccccc-----CCCCCeEeccCCcccC----CChhhhhcCC
Q 043347 288 YMYKCNIHGR----IPKEIGNLINLTKLSLGYNNLSGSLPITLGR-----LKKLQGLDLQNNKFEG----PIPHEFCHFS 354 (385)
Q Consensus 288 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~ 354 (385)
++++|.+.+. ++.++..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++ .++..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 9999998765 3455667899999999999987654444432 6799999999999986 5677788899
Q ss_pred CccEEEccCCccccc
Q 043347 355 RLYKFYLNRNKLSGS 369 (385)
Q Consensus 355 ~L~~L~l~~~~~~~~ 369 (385)
+|++|++++|++++.
T Consensus 399 ~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 399 SLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCEEECCSSSCCHH
T ss_pred CccEEECCCCCCCHH
Confidence 999999999998865
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2e-29 Score=221.93 Aligned_cols=295 Identities=21% Similarity=0.240 Sum_probs=233.5
Q ss_pred cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347 8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS 87 (385)
Q Consensus 8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 87 (385)
+++.++++++.++ .+|..+. +.++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~-~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTA-LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCC-EEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCe-EEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 7899999999887 6776553 4566 8999999999 77777777999999999999999987788999999999999
Q ss_pred cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc--ccCccccCCCCCcEEEccCCcc
Q 043347 88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG--FIPDTIFNMSTLKTLSLLNNTL 165 (385)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~ 165 (385)
+++|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.+++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999987 5665553 899999999999987777779999999999999998864 5567788999999999999988
Q ss_pred cccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchh
Q 043347 166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE 245 (385)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 245 (385)
.. +|.. ..++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+
T Consensus 184 ~~-l~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-- 256 (330)
T 1xku_A 184 TT-IPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-- 256 (330)
T ss_dssp CS-CCSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC--
T ss_pred cc-CCcc----ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC--
Confidence 74 4432 2379999999999998777788999999999999999998777778889999999999999888643
Q ss_pred hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccC--CCc
Q 043347 246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG--SLP 323 (385)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~ 323 (385)
..+..+++|+.|++++|.+.+..+..+... ......+.++.+++++|.+.. ..+
T Consensus 257 -----~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~-------------------~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 257 -----GGLADHKYIQVVYLHNNNISAIGSNDFCPP-------------------GYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp -----TTTTTCSSCCEEECCSSCCCCCCTTSSSCS-------------------SCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred -----hhhccCCCcCEEECCCCcCCccChhhcCCc-------------------ccccccccccceEeecCcccccccCc
Confidence 356778899999999998876555443221 001123466677777776542 344
Q ss_pred cccccCCCCCeEeccCCc
Q 043347 324 ITLGRLKKLQGLDLQNNK 341 (385)
Q Consensus 324 ~~~~~~~~L~~L~l~~~~ 341 (385)
..+..+++++.+++++|+
T Consensus 313 ~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGTTCCCGGGEEC----
T ss_pred cccccccceeEEEecccC
Confidence 556666677777776653
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-29 Score=222.95 Aligned_cols=285 Identities=21% Similarity=0.251 Sum_probs=175.0
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....|..+.++++|++|++++|
T Consensus 37 ~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 37 VVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred EEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6777777777 7776553 57777888777777666667777778888888777777666667777777888887777
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccc--cCCCCcccCCCCCCceEEccccccCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG--NLPSSKKLIGLPNLEGLILGLNNFSG 193 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~ 193 (385)
.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+. .+..+ +|++|++++|.+..
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG--AFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT--SSCSC-CCSCCBCCSSBCSS
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc--cccCC-ccCEEECcCCCCCc
Confidence 766 4444433 677777777777765555566777777777777776642 2111 13333 56666666665553
Q ss_pred CCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC
Q 043347 194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273 (385)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (385)
... .+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..
T Consensus 187 l~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~------------------------------~~ 233 (332)
T 2ft3_A 187 IPK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM------------------------------IE 233 (332)
T ss_dssp CCS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC------------------------------CC
T ss_pred cCc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc------------------------------CC
Confidence 222 111 455555555555554444445555555555555554444 33
Q ss_pred CCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc------CCCCCeEeccCCccc--CC
Q 043347 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR------LKKLQGLDLQNNKFE--GP 345 (385)
Q Consensus 274 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~ 345 (385)
+..+... +++++|++++|++. .+|..+..+++|+.|++++|.+++..+..+.. .++|+.|++.+|.+. +.
T Consensus 234 ~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 234 NGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp TTGGGGC-TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred hhHhhCC-CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 3333333 45555555555554 34455666777777777777776544444433 356778888888765 46
Q ss_pred ChhhhhcCCCccEEEccCCc
Q 043347 346 IPHEFCHFSRLYKFYLNRNK 365 (385)
Q Consensus 346 ~~~~~~~~~~L~~L~l~~~~ 365 (385)
.+..+..+++|+.+++++|+
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 66777778888888887764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-29 Score=223.73 Aligned_cols=294 Identities=23% Similarity=0.265 Sum_probs=233.5
Q ss_pred cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347 8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS 87 (385)
Q Consensus 8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 87 (385)
+++.++++++.+. .+|..+. +.++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~-~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTT-LLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCC-EEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCe-EEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 7999999999987 7777664 4666 8999999999 67666677999999999999999977788999999999999
Q ss_pred cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc--ccCccccCCCCCcEEEccCCcc
Q 043347 88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG--FIPDTIFNMSTLKTLSLLNNTL 165 (385)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~ 165 (385)
+++|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.+++++|.+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 9999988 5666554 899999999999986666779999999999999999864 455666667 999999999998
Q ss_pred cccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchh
Q 043347 166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE 245 (385)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 245 (385)
.. +|.. ..++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...+
T Consensus 185 ~~-l~~~----~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-- 257 (332)
T 2ft3_A 185 TG-IPKD----LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-- 257 (332)
T ss_dssp SS-CCSS----SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC--
T ss_pred Cc-cCcc----ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC--
Confidence 74 4432 2378999999999998777788999999999999999998877778899999999999999988643
Q ss_pred hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc--CCCc
Q 043347 246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS--GSLP 323 (385)
Q Consensus 246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~ 323 (385)
..+..+++|+.|++++|.+.+..+..+.... + ....+.|+.|++++|.+. +..+
T Consensus 258 -----~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-----------------~--~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 258 -----AGLPDLKLLQVVYLHTNNITKVGVNDFCPVG-----------------F--GVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp -----TTGGGCTTCCEEECCSSCCCBCCTTSSSCSS-----------------C--CSSSCCBSEEECCSSSSCGGGSCG
T ss_pred -----hhhhcCccCCEEECCCCCCCccChhHccccc-----------------c--ccccccccceEeecCcccccccCc
Confidence 3577889999999999988866554443220 0 011346667777777655 3455
Q ss_pred cccccCCCCCeEeccCCc
Q 043347 324 ITLGRLKKLQGLDLQNNK 341 (385)
Q Consensus 324 ~~~~~~~~L~~L~l~~~~ 341 (385)
..+..+++|+.+++++|+
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 566667777777776653
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.2e-28 Score=223.55 Aligned_cols=273 Identities=25% Similarity=0.340 Sum_probs=155.0
Q ss_pred CcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEe
Q 043347 57 PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRI 136 (385)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 136 (385)
++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ +|..+ .+|++|++++|.+.+ +| .++.+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355555555555543 23 35555555555555555542 33222 355555555555543 33 3555666666666
Q ss_pred cccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccc
Q 043347 137 DQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216 (385)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (385)
++|.+.. .+.. .++|++|++++|.+. .+|. +..+++|++|++++|.+.+. +. .+++|++|++++|.+.
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~---~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE---LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLT 270 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC---CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCS
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcCC-cccc---cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccc
Confidence 6655542 2211 235666666666554 3332 45666667777766665532 21 1356677777766665
Q ss_pred ccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC
Q 043347 217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG 296 (385)
Q Consensus 217 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 296 (385)
+. +. .+++|+.|++++|.++..+. ..++|+.|++++|.+.+. ...+.++++|++++|++.+
T Consensus 271 ~l-~~---~~~~L~~L~ls~N~l~~l~~----------~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 271 DL-PE---LPQSLTFLDVSENIFSGLSE----------LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp CC-CC---CCTTCCEEECCSSCCSEESC----------CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC
T ss_pred cc-Cc---ccCcCCEEECcCCccCcccC----------cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc
Confidence 42 22 23677788888777665321 126899999999988752 2233689999999999885
Q ss_pred CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC--CChhhhhcC-------------CCccEEEc
Q 043347 297 RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG--PIPHEFCHF-------------SRLYKFYL 361 (385)
Q Consensus 297 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l 361 (385)
+|.. +++|+.|++++|.+. .+|. .+++|+.|++++|++++ ..|..+..+ ++|+.|++
T Consensus 332 -lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 332 -LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred -cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence 4443 579999999999998 4565 47899999999999987 677777766 88999999
Q ss_pred cCCcccc--cCCCcccc
Q 043347 362 NRNKLSG--SIPSCLGD 376 (385)
Q Consensus 362 ~~~~~~~--~~~~~~~~ 376 (385)
++|++++ .+|..+..
T Consensus 404 s~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 404 ETNPLREFPDIPESVED 420 (454)
T ss_dssp -----------------
T ss_pred CCCcCCccccchhhHhh
Confidence 9999987 56765543
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.8e-33 Score=259.55 Aligned_cols=366 Identities=18% Similarity=0.161 Sum_probs=272.5
Q ss_pred CCCcCcccEEEecCccccC----CCCcccccccceeceeEeecCccccCCChhhhcCCC----cccEEEccCCcccC---
Q 043347 3 LGNLAELEVLVLNNNLLTG----TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLP----RLKGLYVSYNQFKG--- 71 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~----~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~--- 71 (385)
+..+++|++|++++|.+.+ .++..+..+++++ +|++++|.+++..+..++..++ +|++|++++|.+..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA-ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCC-EEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcC-EEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 4568999999999999874 3456677888998 7999999998555556665666 79999999999874
Q ss_pred -cCCCCccCCCCCcEEecccccccccCCCCc-----cCcccccEEEeecccccCCC----CcccCCCcCCcEEEeccccc
Q 043347 72 -PIPNNLWHCKELSRVSLSFNQFTGRIPRDL-----GNSTKLKLLYLSFNNLIGEI----PQEIGSLRNLEILRIDQNNL 141 (385)
Q Consensus 72 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~ 141 (385)
.++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+.+.. +..+..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 346678899999999999998874433332 23568999999999887543 45566789999999999998
Q ss_pred ccccCcccc-----CCCCCcEEEccCCcccccCC--CCcccCCCCCCceEEccccccCCCC-----CcccccCCcccEEE
Q 043347 142 VGFIPDTIF-----NMSTLKTLSLLNNTLSGNLP--SSKKLIGLPNLEGLILGLNNFSGSI-----PSFFFNASKLYYLE 209 (385)
Q Consensus 142 ~~~~~~~~~-----~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~ 209 (385)
.......+. ..++|++|++++|.+...-. -...+..+++|++|++++|.+.+.. ...+..+++|++|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 765444443 36699999999998764210 0112557899999999999876322 22233578999999
Q ss_pred ccCcccccc----CcccccCCCCccEEEecCCcccccchhhhhhhHhhh-cccCceEEEccCCCCCCCC----CCccccc
Q 043347 210 LAYNSFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALV-NCKSLKVIVLAENPVDGVL----PSSIGNL 280 (385)
Q Consensus 210 l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~~ 280 (385)
+++|.+++. .+..+..+++|+.|++++|.+.+.+.. .+...+. ..++|+.|++++|.+.+.. +..+...
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 999988754 355566789999999999987654321 1222332 3369999999999987653 3333333
Q ss_pred ccceeEEEeeccccCCCCCccccC-----CCCccEEECcCccccC----CCccccccCCCCCeEeccCCcccCCChhhhh
Q 043347 281 SVSVEEIYMYKCNIHGRIPKEIGN-----LINLTKLSLGYNNLSG----SLPITLGRLKKLQGLDLQNNKFEGPIPHEFC 351 (385)
Q Consensus 281 ~~~l~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 351 (385)
+++++|++++|.+.+..+..+.. .++|++|++++|.+++ .++..+..+++|+.|++++|++++.....+.
T Consensus 341 -~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 341 -RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp -SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred -CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence 79999999999887654444432 6799999999999985 5777888899999999999999865444443
Q ss_pred c-----CCCccEEEccCCcccccCCC
Q 043347 352 H-----FSRLYKFYLNRNKLSGSIPS 372 (385)
Q Consensus 352 ~-----~~~L~~L~l~~~~~~~~~~~ 372 (385)
. ..+|+.|++.++.+....+.
T Consensus 420 ~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 420 ESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp HHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred HHhccCCcchhheeecccccCHHHHH
Confidence 2 34699999998877654443
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.3e-29 Score=219.44 Aligned_cols=249 Identities=27% Similarity=0.443 Sum_probs=162.9
Q ss_pred CcccEEEccCCcccC--cCCCCccCCCCCcEEeccc-ccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcE
Q 043347 57 PRLKGLYVSYNQFKG--PIPNNLWHCKELSRVSLSF-NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEI 133 (385)
Q Consensus 57 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 133 (385)
.++++|+++++.+.+ ..+..+..+++|++|++++ +.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777766 5666777777777777774 6666666767777777777777777776666667777777777
Q ss_pred EEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCC-CCceEEccccccCCCCCcccccCCcccEEEccC
Q 043347 134 LRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP-NLEGLILGLNNFSGSIPSFFFNASKLYYLELAY 212 (385)
Q Consensus 134 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (385)
|++++|.+....+..+..+++|++|++++|.+.+..|.. +..++ .|++|++++|.+.+..+..+..++ |++|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH--HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 777777766666666667777777777777665444432 33444 556666665555544444444444 56666666
Q ss_pred ccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecc
Q 043347 213 NSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC 292 (385)
Q Consensus 213 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 292 (385)
|.+.+..+..+..+++|+.|++++|.+.. ..+. +... +++++|++++|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------------~~~~-~~~l-~~L~~L~Ls~N 254 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------------------DLGK-VGLS-KNLNGLDLRNN 254 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECC------------------------------BGGG-CCCC-TTCCEEECCSS
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceee------------------------------ecCc-cccc-CCCCEEECcCC
Confidence 55554445555555555555555555442 2222 2222 56666666666
Q ss_pred ccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCc
Q 043347 293 NIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341 (385)
Q Consensus 293 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 341 (385)
++.+..|.++..+++|++|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 666667777778888888888888888777765 678888888888886
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.6e-29 Score=216.97 Aligned_cols=249 Identities=29% Similarity=0.381 Sum_probs=177.9
Q ss_pred ccccEEEeecccccC--CCCcccCCCcCCcEEEecc-cccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347 105 TKLKLLYLSFNNLIG--EIPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181 (385)
Q Consensus 105 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L 181 (385)
.++++|+++++.+.+ .+|..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..|.. +..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG--GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH--HhCCCCC
Confidence 578899999998887 7888888999999999985 7777777888888899999999888887665543 6677888
Q ss_pred ceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCC-CccEEEecCCcccccchhhhhhhHhhhcccCce
Q 043347 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLR-NLERLGLQSNYLTSSTSELMSLFSALVNCKSLK 260 (385)
Q Consensus 182 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 260 (385)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.... +..+..++ |+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~------~~~~~~l~-L~ 200 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI------PPTFANLN-LA 200 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC------CGGGGGCC-CS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC------ChHHhCCc-cc
Confidence 8888888887766777777788888888888877756666676666 7788888777766432 23444444 77
Q ss_pred EEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCC
Q 043347 261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340 (385)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 340 (385)
.|++++|.+.+..+..+... ++++.|++++|++.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp EEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred EEECcCCcccCcCCHHHhcC-CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 77777777666555555555 5666666666666544433 555666666666666666666666666666666666666
Q ss_pred cccCCChhhhhcCCCccEEEccCCc
Q 043347 341 KFEGPIPHEFCHFSRLYKFYLNRNK 365 (385)
Q Consensus 341 ~~~~~~~~~~~~~~~L~~L~l~~~~ 365 (385)
++++..|.. ..+++|+.+++++|+
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccccCCCC-ccccccChHHhcCCC
Confidence 666555554 556666666666665
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=209.87 Aligned_cols=281 Identities=20% Similarity=0.207 Sum_probs=173.9
Q ss_pred cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccccc
Q 043347 29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLK 108 (385)
Q Consensus 29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 108 (385)
.|+..- ..+++++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|+
T Consensus 29 ~C~~~~-~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNG-ICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTS-EEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCe-EeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 344444 4677777777 6776553 4677777777777655555677777777777777777655556677777777
Q ss_pred EEEeecccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347 109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG 187 (385)
Q Consensus 109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (385)
+|++++|.+.+..+..+..+++|++|++++|.+..... ..+..+++|++|++++|.
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~----------------------- 160 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD----------------------- 160 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-----------------------
Confidence 77777777664333346666777777776666653332 244555555555555542
Q ss_pred ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCC
Q 043347 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN 267 (385)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (385)
.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...+. ..+..+++|+.|++++|
T Consensus 161 --~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 161 --TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE------IFVDVTSSVECLELRDT 232 (353)
T ss_dssp --SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH------HHHHHTTTEEEEEEESC
T ss_pred --cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh------hhhhhcccccEEECCCC
Confidence 1222223445556667777777766665556667777777777777777654322 22345677777777777
Q ss_pred CCCCCCCCcccc--cccceeEEEeeccccCC----CCCccccCCCCccEEECcCccccCCCccc-cccCCCCCeEeccCC
Q 043347 268 PVDGVLPSSIGN--LSVSVEEIYMYKCNIHG----RIPKEIGNLINLTKLSLGYNNLSGSLPIT-LGRLKKLQGLDLQNN 340 (385)
Q Consensus 268 ~~~~~~~~~~~~--~~~~l~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~ 340 (385)
.+.+..+..+.. ....++.+++.++.+.+ .+|.++..+++|++|++++|.++ .+|.. +..+++|+.|++++|
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 776544333221 12455666666665543 24555677778888888888877 44443 467788888888888
Q ss_pred cccCCC
Q 043347 341 KFEGPI 346 (385)
Q Consensus 341 ~~~~~~ 346 (385)
++....
T Consensus 312 ~~~~~~ 317 (353)
T 2z80_A 312 PWDCSC 317 (353)
T ss_dssp CBCCCH
T ss_pred CccCcC
Confidence 777443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=212.30 Aligned_cols=285 Identities=18% Similarity=0.186 Sum_probs=215.2
Q ss_pred CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347 4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL 83 (385)
Q Consensus 4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 83 (385)
..|+.....+.+++.++ .+|..+. ++++ +|+++++.++ .++...+..+++|++|++++|.+.+..+..|..+++|
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~-~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVK-SLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCC-EEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCc-EEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 34677777888888888 7887665 3666 8999999999 7777777799999999999999997778889999999
Q ss_pred cEEecccccccccCCCCccCcccccEEEeecccccCCCC-cccCCCcCCcEEEeccc-ccccccCccccCCCCCcEEEcc
Q 043347 84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP-QEIGSLRNLEILRIDQN-NLVGFIPDTIFNMSTLKTLSLL 161 (385)
Q Consensus 84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~l~l~ 161 (385)
++|++++|.+....+..+.++++|++|++++|.+....+ ..+..+++|+.|++++| .+....+..+..+++|++|+++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 999999999985444458899999999999999884433 47889999999999998 4666667788899999999999
Q ss_pred CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccc---cCCCCccEEEecCCc
Q 043347 162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL---GQLRNLERLGLQSNY 238 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 238 (385)
+|.+.+..+.. +..+++|++|++++|.+.......+..+++|++|++++|.+.+.....+ ...+.++.++++++.
T Consensus 183 ~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 183 ASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp ETTCCEECTTT--TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCcCccCHHH--HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 99887654443 6678888999998888764434445567888888888888775443322 235567777777776
Q ss_pred ccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccc
Q 043347 239 LTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL 318 (385)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (385)
+.+. ....++..+..+++|+.|++++|.+. ......+..+++|++|++++|++
T Consensus 261 l~~~--~l~~l~~~l~~l~~L~~L~Ls~N~l~-------------------------~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 261 ITDE--SLFQVMKLLNQISGLLELEFSRNQLK-------------------------SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCHH--HHHHHHHHHHTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCc--chhhhHHHHhcccCCCEEECCCCCCC-------------------------ccCHHHHhcCCCCCEEEeeCCCc
Confidence 5542 22223445666666666666665544 22223357789999999999998
Q ss_pred cCCC
Q 043347 319 SGSL 322 (385)
Q Consensus 319 ~~~~ 322 (385)
....
T Consensus 314 ~~~~ 317 (353)
T 2z80_A 314 DCSC 317 (353)
T ss_dssp CCCH
T ss_pred cCcC
Confidence 8543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5.4e-27 Score=204.23 Aligned_cols=226 Identities=23% Similarity=0.284 Sum_probs=114.3
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccccccccc--CCCCccCcccccEEEee
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR--IPRDLGNSTKLKLLYLS 113 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~ 113 (385)
.++++++.++ .+|..+. ++|++|++++|.+.......|..+++|++|++++|.+... .+..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4566666665 5555432 4566666666666544444456666666666666655421 13334455666666666
Q ss_pred cccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347 114 FNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS 192 (385)
Q Consensus 114 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 192 (385)
+|.+. .++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+.. +..+++|++|++++|.+.
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT--TTTCTTCCEEECTTCEEG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh--cccCcCCCEEECCCCccc
Confidence 66554 344445555666666666555543322 34445555555555555544332221 334445555555555443
Q ss_pred C-CCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347 193 G-SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG 271 (385)
Q Consensus 193 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (385)
+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+. ..+..+++|+.|++++|.+.+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT------FPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS------GGGTTCTTCCEEECTTSCCCB
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh------hhccCcccCCEeECCCCCCcc
Confidence 2 233444445555555555555544444445555555555555555444322 123344444444444444443
Q ss_pred CCC
Q 043347 272 VLP 274 (385)
Q Consensus 272 ~~~ 274 (385)
..+
T Consensus 238 ~~~ 240 (306)
T 2z66_A 238 SKK 240 (306)
T ss_dssp CSS
T ss_pred cCH
Confidence 333
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-26 Score=201.77 Aligned_cols=282 Identities=20% Similarity=0.227 Sum_probs=170.1
Q ss_pred cEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCC--CCcccCCCcCCcEEEec
Q 043347 60 KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE--IPQEIGSLRNLEILRID 137 (385)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 137 (385)
+.++.+++.++ .++..+ .+++++|++++|.+....+..+.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45677776665 333333 25788888888877743334467788888888887776522 24455567777777777
Q ss_pred ccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccc
Q 043347 138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG 217 (385)
Q Consensus 138 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (385)
+|.+.. .+..+..+++|++|++++|.+....+ ...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 777663 44446667777777777766653221 1124455556666665555544444444555555555555555443
Q ss_pred -cCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC
Q 043347 218 -LIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG 296 (385)
Q Consensus 218 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 296 (385)
..+..+..+++|+.|+ +++|.+.+..+..+... +++++|++++|++.+
T Consensus 165 ~~~~~~~~~l~~L~~L~------------------------------Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLD------------------------------LSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFS 213 (306)
T ss_dssp GEECSCCTTCTTCCEEE------------------------------CTTSCCCEECTTTTTTC-TTCCEEECTTSCCSB
T ss_pred ccchhHHhhCcCCCEEE------------------------------CCCCCcCCcCHHHhcCC-CCCCEEECCCCccCc
Confidence 2333444444444444 44444444444444433 456666666666655
Q ss_pred CCCccccCCCCccEEECcCccccCCCccccccCC-CCCeEeccCCcccCCCh--hhhhcCCCccEEEccCCcccccCCCc
Q 043347 297 RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK-KLQGLDLQNNKFEGPIP--HEFCHFSRLYKFYLNRNKLSGSIPSC 373 (385)
Q Consensus 297 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (385)
..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++...-. .....+...+.+.+..+.+....|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 5555677788899999999988877777787774 89999999998874322 11222344455556666777777776
Q ss_pred cccc
Q 043347 374 LGDL 377 (385)
Q Consensus 374 ~~~l 377 (385)
+.+.
T Consensus 294 ~~g~ 297 (306)
T 2z66_A 294 KQGM 297 (306)
T ss_dssp GTTC
T ss_pred hCCc
Confidence 6654
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.2e-26 Score=198.27 Aligned_cols=224 Identities=23% Similarity=0.232 Sum_probs=147.4
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4666666666 666543 356777777777766555566677777777777777666555666777777777777777
Q ss_pred c-ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC
Q 043347 116 N-LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS 194 (385)
Q Consensus 116 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 194 (385)
. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh--HhccCCCccEEECCCCccccc
Confidence 5 5544456666777777777777776655566666677777777777766533222 155666777777777766654
Q ss_pred CCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347 195 IPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG 271 (385)
Q Consensus 195 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (385)
....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+. ..+..+++|+.|++++|++..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH------HHcccCcccCEEeccCCCccC
Confidence 45556667777777777777766656667777777777777777665432 345666777777777776653
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.5e-25 Score=196.42 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=130.3
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 86 (385)
+++++|+++++.+. .+|..++++++++ +|++++|.++ .+|..+. .+++|++|++++|.+. .++..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~-~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQ-HMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCS-EEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCC-EEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 55666666666665 5666666666666 5666666666 5665443 5666666666666665 445556666666666
Q ss_pred ecccccccccCCCCccC---------cccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcE
Q 043347 87 SLSFNQFTGRIPRDLGN---------STKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKT 157 (385)
Q Consensus 87 ~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 157 (385)
++++|...+..|..+.. +++|++|++++|.+. .+|..+..+++|+.|++++|.+.. .+..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 66665555555554433 666666666666655 555556666666666666666553 3344555666666
Q ss_pred EEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCC
Q 043347 158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237 (385)
Q Consensus 158 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (385)
|++++|.+.+..|.. +..+++|++|++++|...+..+..+..+++|++|++++|.+.+..|..+..+++++.+.+..+
T Consensus 234 L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 234 LDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 666665555444432 445555666666655555445555555555666666555555555555555555555555544
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.3e-29 Score=240.95 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=82.9
Q ss_pred CCCCccEEEecCCcccccchhhhhhhHhhhc-ccCceEEEcc----CCCCCCCC-----CCcccccccceeEEEeeccc-
Q 043347 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVN-CKSLKVIVLA----ENPVDGVL-----PSSIGNLSVSVEEIYMYKCN- 293 (385)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~~-----~~~~~~~~~~l~~L~l~~~~- 293 (385)
.+++|+.|+++.+.+++. .+..+.. +++|+.|+++ .+.+++.. +..+.. .+++++|++++|.
T Consensus 376 ~~~~L~~L~l~~~~l~~~------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNE------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQG 448 (592)
T ss_dssp HCTTCSEEEEEESCCCHH------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGG
T ss_pred hCccCeEEEeecCCccHH------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCC
Confidence 345555555544444332 1223332 5666666664 23343321 111222 2567777776543
Q ss_pred -cCCCCCcccc-CCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCChhh-hhcCCCccEEEccCCccccc
Q 043347 294 -IHGRIPKEIG-NLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRNKLSGS 369 (385)
Q Consensus 294 -~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 369 (385)
+.+.....+. .+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..... +..+++|+.|++++|+++..
T Consensus 449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3322222232 367788888888877642 3444567888888888888876443333 34588888888888888765
Q ss_pred CCCccc-ccccC
Q 043347 370 IPSCLG-DLNSL 380 (385)
Q Consensus 370 ~~~~~~-~l~~L 380 (385)
....+. .++.+
T Consensus 529 ~~~~l~~~~p~l 540 (592)
T 3ogk_B 529 GQDLMQMARPYW 540 (592)
T ss_dssp CTTGGGGCCTTE
T ss_pred HHHHHHHhCCCc
Confidence 444332 34443
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2e-25 Score=195.58 Aligned_cols=234 Identities=19% Similarity=0.251 Sum_probs=148.8
Q ss_pred CCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEE
Q 043347 80 CKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS 159 (385)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 159 (385)
..+++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .++..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888777 66777777888888888888777 67777777888888888888777 5566677777777777
Q ss_pred ccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347 160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239 (385)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 239 (385)
+++|...+.+|... ... .....+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+
T Consensus 157 L~~n~~~~~~p~~~--------~~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 157 IRACPELTELPEPL--------AST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEETTCCCCCSCS--------EEE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred CCCCCCccccChhH--------hhc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 77766554444321 010 11223455666666666666665 3445566666666666666666
Q ss_pred cccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc
Q 043347 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS 319 (385)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 319 (385)
...+ ..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.
T Consensus 219 ~~l~-------~~l~~l~~L~~L~Ls~n~~~~-------------------------~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 219 SALG-------PAIHHLPKLEELDLRGCTALR-------------------------NYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp CCCC-------GGGGGCTTCCEEECTTCTTCC-------------------------BCCCCTTCCCCCCEEECTTCTTC
T ss_pred CcCc-------hhhccCCCCCEEECcCCcchh-------------------------hhHHHhcCCCCCCEEECCCCCch
Confidence 5432 234455555555555555444 44445555666666666666666
Q ss_pred CCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcc
Q 043347 320 GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366 (385)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 366 (385)
+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 56666666666666666666666666666666666666666665433
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.4e-25 Score=203.33 Aligned_cols=248 Identities=21% Similarity=0.253 Sum_probs=183.5
Q ss_pred CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL 161 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 161 (385)
..+.++.++..+. .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3466777776666 5666553 688999999998887777888889999999999998887777788888899999998
Q ss_pred CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc-cccccCcccccCCCCccEEEecCCccc
Q 043347 162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN-SFSGLIPKALGQLRNLERLGLQSNYLT 240 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~ 240 (385)
+|.+....+. .+..+++|++|++++|.+.......+..+++|++|++++| .+.......+..+++|+.|++++|.+.
T Consensus 132 ~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 132 DNWLTVIPSG--AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp SSCCSBCCTT--TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCccChh--hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 8887744332 2667888888888888877666667778888888888874 444444456777888888888888777
Q ss_pred ccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccC
Q 043347 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG 320 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 320 (385)
..+ .+..+++|+.|++++|.+.+..+..+..+ +++++|++++|++.+..+..+..+++|+.|++++|.+.+
T Consensus 210 ~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 210 DMP--------NLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp SCC--------CCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccc--------cccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 542 35667777888888777776666666665 677777777777776666667777777777777777775
Q ss_pred CCccccccCCCCCeEeccCCccc
Q 043347 321 SLPITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 321 ~~~~~~~~~~~L~~L~l~~~~~~ 343 (385)
..+..+..+++|+.|++++|.+.
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEE
T ss_pred cChHHhccccCCCEEEccCCCcC
Confidence 55556666777777777777654
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.5e-25 Score=193.06 Aligned_cols=256 Identities=23% Similarity=0.273 Sum_probs=145.8
Q ss_pred cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347 84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163 (385)
Q Consensus 84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 163 (385)
++++.+++.+. .+|..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45566655554 344433 456777777777666555555666667777777666666555556666666666666666
Q ss_pred c-ccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347 164 T-LSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242 (385)
Q Consensus 164 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 242 (385)
. +....+.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+
T Consensus 91 ~~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---------------- 152 (285)
T 1ozn_A 91 AQLRSVDPAT--FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL---------------- 152 (285)
T ss_dssp TTCCCCCTTT--TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------
T ss_pred CCccccCHHH--hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC----------------
Confidence 5 33221211 4445555555555555544434444444555555555554443333334444
Q ss_pred chhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCC
Q 043347 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL 322 (385)
Q Consensus 243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 322 (385)
++|+.|++++|.+.+..+..+... +++++|++++|.+.+..+.++..+++|++|++++|.+.+..
T Consensus 153 --------------~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 153 --------------GNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp --------------TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------CCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 444444444444443333333333 45666666666665555666777788888888888887655
Q ss_pred ccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccc
Q 043347 323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGD 376 (385)
Q Consensus 323 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (385)
+..+..+++|+.|++++|++....+.. .....++.+..+.+.+....|..+.+
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 566777888888888888776422211 11233455556666676667766543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.3e-25 Score=203.75 Aligned_cols=223 Identities=22% Similarity=0.193 Sum_probs=100.1
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 68 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 68 LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp EEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred EEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 4455555444 333333344455555555554444333344444455555555554444333334444455555555554
Q ss_pred cccCCCCcccCCCcCCcEEEeccc-ccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQN-NLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS 194 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 194 (385)
.+....+..|..+++|+.|+++++ .+....+..+..+++|+.|++++|.+.. +|. +..+++|++|++++|.+...
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~---~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN---LTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC---CTTCSSCCEEECTTSCCCEE
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc---cCCCcccCEEECCCCccCcc
Confidence 444333334444455555555442 2222222334444455555554444431 121 33444445555554444443
Q ss_pred CCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347 195 IPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269 (385)
Q Consensus 195 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (385)
.+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++..+. ..+..+++|+.|++++|++
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH------DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT------TTTSSCTTCCEEECCSSCE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh------hHhccccCCCEEEcCCCCc
Confidence 34444444445555554444444444444444445555555444443322 2233444444455444443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6e-25 Score=201.67 Aligned_cols=244 Identities=18% Similarity=0.144 Sum_probs=129.3
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++.++..++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 58 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3555555555 5554432 45566666666655555555566666666666666555444455556666666666666
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.....++.. .+..+++|++|++++|.+.+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCccccc-
Confidence 555444444555666666666666655444445555666666666553332222221 144555555555555555432
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (385)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.+.+..+.
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER------NAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH------HHhcCCCCCCEEECCCCcCCccChH
Confidence 124445555555555555555445555555555555555555544322 2344555555555555555544433
Q ss_pred cccccccceeEEEeeccc
Q 043347 276 SIGNLSVSVEEIYMYKCN 293 (385)
Q Consensus 276 ~~~~~~~~l~~L~l~~~~ 293 (385)
.+..+ ++++.|++++|.
T Consensus 285 ~~~~l-~~L~~L~L~~Np 301 (452)
T 3zyi_A 285 LFTPL-RYLVELHLHHNP 301 (452)
T ss_dssp SSTTC-TTCCEEECCSSC
T ss_pred Hhccc-cCCCEEEccCCC
Confidence 33333 455555555554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5.5e-25 Score=201.19 Aligned_cols=246 Identities=22% Similarity=0.238 Sum_probs=155.5
Q ss_pred ccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecc
Q 043347 59 LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ 138 (385)
Q Consensus 59 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 138 (385)
.+.++..+..++ .+|..+. ++++.|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456777666665 4444443 5788888888887766667788888888888888887766667777888888888888
Q ss_pred cccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccc-cCCCCCcccccCCcccEEEccCccccc
Q 043347 139 NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNN-FSGSIPSFFFNASKLYYLELAYNSFSG 217 (385)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (385)
|.++...+..+..+++|++|++++|.+....+. .+..+++|++|+++++. +.......+..+++|++|++++|.+..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHH--HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 887766666677778888888887777643222 25567777777777643 222233455666666666666666653
Q ss_pred cCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC
Q 043347 218 LIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR 297 (385)
Q Consensus 218 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 297 (385)
. + .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+ ++|+.|++++|++.+.
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRP------GSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLL 270 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCC
T ss_pred c-c-ccCCCcccCEEECCCCccCccCh------hhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCcc
Confidence 3 2 35556666666666666555422 345555666666666666555544444444 4555555555555544
Q ss_pred CCccccCCCCccEEECcCccc
Q 043347 298 IPKEIGNLINLTKLSLGYNNL 318 (385)
Q Consensus 298 ~~~~~~~~~~L~~L~l~~~~~ 318 (385)
.+..+..+++|+.|++++|.+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCE
T ss_pred ChhHhccccCCCEEEcCCCCc
Confidence 444455555555555555544
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.9e-24 Score=201.30 Aligned_cols=262 Identities=25% Similarity=0.278 Sum_probs=173.1
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.|+++++.++ .+|..+. ++|++|++++|.++ .++. .+++|++|++++|.+. .+|. .+++|++|++++|
T Consensus 44 ~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 44 VLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp EEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred EEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence 6888888888 7777663 68888888888877 3333 4678888888888876 4454 5688888888888
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+.. +|. .+++|+.|++++|.++. ++. .+++|++|++++|.+.. ++. .+.+|+.|++++|.++...
T Consensus 112 ~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 112 PLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCC
T ss_pred cCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCCCCCc
Confidence 7763 343 46778888888887764 333 24778888888877653 221 3456777777777766422
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (385)
..+++|+.|++++|.++.. +. .+++|+.|++++|.++..+. .+++|+.|++++|.+.+. |
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~----------~~~~L~~L~Ls~N~L~~l-p- 237 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTSL-P- 237 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC----------CCTTCCEEECCSSCCSCC-C-
T ss_pred ----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccCC----------CCCCCCEEEccCCccCcC-C-
Confidence 3456777777777777643 22 23677777777777665432 135677777777766642 2
Q ss_pred cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhh
Q 043347 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFC 351 (385)
Q Consensus 276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 351 (385)
...++++.|++++|++.. +|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..+.
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 122567777777776663 333 4566777777777776 5566666777777777777776655555444
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2.3e-28 Score=232.45 Aligned_cols=349 Identities=13% Similarity=0.124 Sum_probs=183.9
Q ss_pred cccceeceeEeecCccccCCChhhhcCCCc-ccEEEccCCc-ccC-cCCCCccCCCCCcEEecccccccccCC----CCc
Q 043347 29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPR-LKGLYVSYNQ-FKG-PIPNNLWHCKELSRVSLSFNQFTGRIP----RDL 101 (385)
Q Consensus 29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l 101 (385)
.+++++ +|+++++.+++..+..+...++. |++|++++|. +.. ........+++|++|++++|.+.+... ...
T Consensus 110 ~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLK-SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCC-EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCC-eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 556666 67777776664433333322444 7777776664 111 111122356777777777776543321 223
Q ss_pred cCcccccEEEeecccccC----CCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccccc-CCCCcccC
Q 043347 102 GNSTKLKLLYLSFNNLIG----EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN-LPSSKKLI 176 (385)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~ 176 (385)
..+++|++|+++++.+.. .++..+.++++|+.|++++|.+.. .+..+..+++|+.++++....... .+....+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 456677777777666542 222334456777777777766553 344555666666666653211100 00111133
Q ss_pred CCCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc-------------------------CcccccCCCCccE
Q 043347 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL-------------------------IPKALGQLRNLER 231 (385)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~ 231 (385)
.+++|+.+++..... ...+..+..+++|++|++++|.+.+. .......+++|+.
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 344444444443211 12233334444444444444443211 1112234455666
Q ss_pred EEecC-----------CcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeec----cccCC
Q 043347 232 LGLQS-----------NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYK----CNIHG 296 (385)
Q Consensus 232 L~l~~-----------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~----~~~~~ 296 (385)
|++++ +.++... .......+++|+.|+++.+.+++..+..+....+++++|++.+ +.+++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~-----~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRG-----LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHH-----HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred EEeecCccccccccccCccCHHH-----HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 66652 2222110 1122344667777777666666554444444336777777763 33332
Q ss_pred C-----CCccccCCCCccEEECcCcc--ccCCCcccc-ccCCCCCeEeccCCcccCCC-hhhhhcCCCccEEEccCCccc
Q 043347 297 R-----IPKEIGNLINLTKLSLGYNN--LSGSLPITL-GRLKKLQGLDLQNNKFEGPI-PHEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 297 ~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 367 (385)
. ++..+..+++|++|++++|. +++.....+ ..+++|+.|++++|.+++.. +..+..+++|+.|++++|+++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 1 12224557788888886543 443333333 34788999999999887533 334466899999999999987
Q ss_pred ccC-CCcccccccCccccC
Q 043347 368 GSI-PSCLGDLNSLRILSL 385 (385)
Q Consensus 368 ~~~-~~~~~~l~~L~~l~i 385 (385)
+.. +.....+++|+.|++
T Consensus 502 ~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 502 ERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp HHHHHHHHHHCSSCCEEEE
T ss_pred HHHHHHHHHhcCccCeeEC
Confidence 553 333456778877753
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=202.42 Aligned_cols=244 Identities=23% Similarity=0.214 Sum_probs=153.4
Q ss_pred CcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCc
Q 043347 103 NSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182 (385)
Q Consensus 103 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~ 182 (385)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+. ...++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-------~~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-------LVGPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-------EECTTCC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-------cCCCCcC
Confidence 34455555555555554444445555555555555555543222 44555555555555554421 1224556
Q ss_pred eEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhh-hcccCceE
Q 043347 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL-VNCKSLKV 261 (385)
Q Consensus 183 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~ 261 (385)
+|++++|.+..... ..+++|++|++++|.+....+..+..+++|+.|++++|.+..... ..+ ..+++|+.
T Consensus 103 ~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~ 173 (317)
T 3o53_A 103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEH 173 (317)
T ss_dssp EEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCE
T ss_pred EEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH------HHHhhccCcCCE
Confidence 66666555543222 224567777777777665555566667777777777777665432 222 35677777
Q ss_pred EEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCc
Q 043347 262 IVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341 (385)
Q Consensus 262 L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 341 (385)
|++++|.+.+.... . . .+++++|++++|++.+. +..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 174 L~L~~N~l~~~~~~-~-~-l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 174 LNLQYNFIYDVKGQ-V-V-FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EECTTSCCCEEECC-C-C-CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred EECCCCcCcccccc-c-c-cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 77777777654221 1 2 26788888888888754 344778889999999999888 567778888899999999998
Q ss_pred cc-CCChhhhhcCCCccEEEccCC-ccccc
Q 043347 342 FE-GPIPHEFCHFSRLYKFYLNRN-KLSGS 369 (385)
Q Consensus 342 ~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~ 369 (385)
+. +..+..+..+++|+.++++++ .+.+.
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccCcCHHHHHhccccceEEECCCchhccCC
Confidence 87 667777778888888888855 34433
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2e-26 Score=201.40 Aligned_cols=256 Identities=19% Similarity=0.155 Sum_probs=205.9
Q ss_pred ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347 107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186 (385)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l 186 (385)
++..++..+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEEC
Confidence 3444455554443334445678899999999999998777889999999999999999875433 778999999999
Q ss_pred cccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccC
Q 043347 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE 266 (385)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (385)
++|.+.+ +...++|++|++++|.+....+. .+++|+.|++++|.++...+ ..+..+++|+.|++++
T Consensus 88 s~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 88 NNNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CSSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG------BCTGGGSSEEEEECTT
T ss_pred cCCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc------hhhhccCCCCEEECCC
Confidence 9998763 23458999999999998765443 46889999999999887533 3577889999999999
Q ss_pred CCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCC
Q 043347 267 NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPI 346 (385)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 346 (385)
|.+.+..+..+....+++++|++++|.+.+. + ....+++|++|++++|.+.+ ++..+..+++|+.|++++|+++ .+
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-ch
Confidence 9998877666643338999999999999754 2 23458999999999999984 5556889999999999999998 56
Q ss_pred hhhhhcCCCccEEEccCCccc-ccCCCcccccccCcccc
Q 043347 347 PHEFCHFSRLYKFYLNRNKLS-GSIPSCLGDLNSLRILS 384 (385)
Q Consensus 347 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~l~ 384 (385)
|..+..+++|+.|++++|+++ +..+..+..+++|+.++
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 777888999999999999998 56677777777777653
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.7e-23 Score=195.57 Aligned_cols=265 Identities=29% Similarity=0.351 Sum_probs=166.1
Q ss_pred cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347 8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS 87 (385)
Q Consensus 8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 87 (385)
+++.|+++++.++ .+|..+. ++++ +|++++|.++ .+|. .+++|++|++++|.++. ++. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~-~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHIT-TLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCS-EEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCc-EEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 4677777777776 6666554 4555 6777777777 6665 35677777777777663 332 557777777
Q ss_pred cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccc
Q 043347 88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG 167 (385)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 167 (385)
+++|.+. .+|. .+++|++|++++|.+. .+|.. +++|++|++++|.++.. +. .+++|+.|++++|.+..
T Consensus 108 Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 7777666 3333 4567777777777665 34432 36777777777766532 22 34567777777776653
Q ss_pred cCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhh
Q 043347 168 NLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELM 247 (385)
Q Consensus 168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 247 (385)
+| ..+++|+.|++++|.+... +. ..++|+.|++++|.+... +. .+++|+.|++++|.++..+
T Consensus 176 -l~-----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~lp---- 237 (622)
T 3g06_A 176 -LP-----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLP---- 237 (622)
T ss_dssp -CC-----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCC----
T ss_pred -Cc-----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcCC----
Confidence 22 2456777777777766632 21 235677777777766643 21 2366777777777666532
Q ss_pred hhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccc
Q 043347 248 SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLG 327 (385)
Q Consensus 248 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 327 (385)
..+++|+.|++++|.+... |. ..++++.|++++|++. .+|..+..+++|+.|++++|.+.+..+..+.
T Consensus 238 ------~~l~~L~~L~Ls~N~L~~l-p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 ------VLPSELKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp ------CCCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ------CCCCcCcEEECCCCCCCcC-Cc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 2346677777777776632 22 2256777777777776 4566677777777777777777665555444
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5.4e-26 Score=198.19 Aligned_cols=252 Identities=19% Similarity=0.177 Sum_probs=140.5
Q ss_pred cCCCCCcEEecccccccccCCCCccCcccccEEEeecccccC-CCCcccC-------CCcCCcEEEecccccccccCccc
Q 043347 78 WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIG-------SLRNLEILRIDQNNLVGFIPDTI 149 (385)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~ 149 (385)
...++|+.+++++|.+ .+|..+... |++|+++++.+.. ..+..+. .+++|++|++++|.+....+..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445677777777766 455544332 6667777666632 3344333 56677777777776665555544
Q ss_pred --cCCCCCcEEEccCCcccccCCCCcccCCC-----CCCceEEccccccCCCCCcccccCCcccEEEccCcccccc--Cc
Q 043347 150 --FNMSTLKTLSLLNNTLSGNLPSSKKLIGL-----PNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL--IP 220 (385)
Q Consensus 150 --~~l~~L~~l~l~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 220 (385)
..+++|++|++++|.+.+. |.. +..+ ++|++|++++|.+....+..+..+++|++|++++|++.+. .+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~--~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAW--LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSH--HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHH--HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 5666666666666666543 211 2222 5555555555555544445555555555555555553321 11
Q ss_pred ccc--cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCC
Q 043347 221 KAL--GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298 (385)
Q Consensus 221 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 298 (385)
..+ ..+++|+.|++++|.++..+.. ....+..+++|+.|++++|.+.+..+.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------- 246 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGV---CSALAAARVQLQGLDLSHNSLRDAAGA----------------------- 246 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHH---HHHHHHTTCCCSEEECTTSCCCSSCCC-----------------------
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHH---HHHHHhcCCCCCEEECCCCcCCcccch-----------------------
Confidence 111 4455555555555555432110 011223444555555555544433211
Q ss_pred CccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 299 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 368 (385)
..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 247 -~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 -PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 23344667777888877777 5555554 7788888888877754 44 6677888888888887764
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.8e-27 Score=226.47 Aligned_cols=371 Identities=15% Similarity=0.121 Sum_probs=182.3
Q ss_pred CCcCcccEEEecCccccCC---CCc------------ccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCC-
Q 043347 4 GNLAELEVLVLNNNLLTGT---IPA------------SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN- 67 (385)
Q Consensus 4 ~~~~~l~~L~l~~~~~~~~---~~~------------~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 67 (385)
.++++|++|+++++..... .|. -...+++++ +|+++++.+++..+..+...+++|++|++++|
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE-EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC-EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC-eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3567778888877642211 111 123556666 68888777765545555445778888888777
Q ss_pred cccCc-CCCCccCCCCCcEEecccccccccCCCCc----cCcccccEEEeeccc--ccC-CCCcccCCCcCCcEEEeccc
Q 043347 68 QFKGP-IPNNLWHCKELSRVSLSFNQFTGRIPRDL----GNSTKLKLLYLSFNN--LIG-EIPQEIGSLRNLEILRIDQN 139 (385)
Q Consensus 68 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~ 139 (385)
.+... .+..+..+++|++|++++|.+.+..+..+ ..+++|++|+++++. +.. .+...+..+++|+.|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 33321 22233467778888887777654333222 356677777777765 110 01111234577777777776
Q ss_pred ccccccCccccCCCCCcEEEccCCcc--------------------------c----ccCCCCcccCCCCCCceEEcccc
Q 043347 140 NLVGFIPDTIFNMSTLKTLSLLNNTL--------------------------S----GNLPSSKKLIGLPNLEGLILGLN 189 (385)
Q Consensus 140 ~~~~~~~~~~~~l~~L~~l~l~~~~~--------------------------~----~~~~~~~~~~~~~~L~~L~l~~~ 189 (385)
......+..+..+++|+.++++.+.. . ..++. .+..+++|++|++++|
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~--~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--VYSVCSRLTTLNLSYA 299 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG--GHHHHTTCCEEECTTC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH--HHHhhCCCCEEEccCC
Confidence 32222444445556666665443310 0 00000 0113456666666666
Q ss_pred ccCCC-CCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecC---------CcccccchhhhhhhHhhhcccC
Q 043347 190 NFSGS-IPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQS---------NYLTSSTSELMSLFSALVNCKS 258 (385)
Q Consensus 190 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~~~~~~ 258 (385)
.+.+. ....+..+++|++|++++| +.+. .......+++|+.|++.+ +.+++. . .......+++
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~---~--l~~l~~~~~~ 373 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ---G--LVSVSMGCPK 373 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH---H--HHHHHHHCTT
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH---H--HHHHHHhchh
Confidence 54321 1122345566666666655 2211 111222356666666633 122211 0 1111223566
Q ss_pred ceEEEccCCCCCCCCCCcccccccceeEEEee-----ccccCCCCC------ccccCCCCccEEECcCccccCCCccccc
Q 043347 259 LKVIVLAENPVDGVLPSSIGNLSVSVEEIYMY-----KCNIHGRIP------KEIGNLINLTKLSLGYNNLSGSLPITLG 327 (385)
Q Consensus 259 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~-----~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 327 (385)
|+.|.+..+.+++.....+....++++.|++. +|...+..+ ..+..+++|+.|++++ .+++.....+.
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 66665555555544333333222566666666 222211111 1134455666666655 33332222333
Q ss_pred c-CCCCCeEeccCCcccCCChhhh-hcCCCccEEEccCCcccccCCC-cccccccCcccc
Q 043347 328 R-LKKLQGLDLQNNKFEGPIPHEF-CHFSRLYKFYLNRNKLSGSIPS-CLGDLNSLRILS 384 (385)
Q Consensus 328 ~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~ 384 (385)
. +++|+.|++++|.+++.....+ ..+++|++|++++|++++..+. ....+++|+.|+
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 2 5566666666666554434333 3466666666666666443322 223355555543
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.9e-25 Score=193.50 Aligned_cols=249 Identities=18% Similarity=0.133 Sum_probs=181.9
Q ss_pred hcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccccccc-ccCCCCcc-------CcccccEEEeecccccCCCCcc
Q 043347 53 CEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT-GRIPRDLG-------NSTKLKLLYLSFNNLIGEIPQE 124 (385)
Q Consensus 53 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~ 124 (385)
+...++|+++++++|.+ ..+..+... |+.|+++++.+. ...+..+. ++++|++|++++|.+.+..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 33567789999999988 445445444 899999999884 33444444 6899999999999999888887
Q ss_pred c--CCCcCCcEEEecccccccccCccccCC-----CCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC--C
Q 043347 125 I--GSLRNLEILRIDQNNLVGFIPDTIFNM-----STLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS--I 195 (385)
Q Consensus 125 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~ 195 (385)
+ ..+++|++|++++|.+... +..+..+ ++|++|++++|.+.+..+.. +..+++|++|++++|.+.+. .
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ--VRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT--CCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH--hccCCCCCEEECCCCCcCcchHH
Confidence 6 8999999999999999876 6767666 99999999999987654433 77899999999999986532 1
Q ss_pred Cc--ccccCCcccEEEccCcccccc---CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347 196 PS--FFFNASKLYYLELAYNSFSGL---IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270 (385)
Q Consensus 196 ~~--~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (385)
+. .+..+++|++|++++|.+... ....+..+++|+.|++++|.+....+ ...+..+++|+.|++++|.+.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----APSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----CSCCCCCTTCCEEECTTSCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----hhhhhhcCCCCEEECCCCccC
Confidence 12 237889999999999998732 22344677999999999999887531 123455678888888888776
Q ss_pred CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc
Q 043347 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS 319 (385)
Q Consensus 271 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 319 (385)
..|..+. +++++|++++|++.+. |. +..+++|++|++++|.++
T Consensus 267 -~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 -QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4444332 4566666666666543 33 555556666666655554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2e-24 Score=199.30 Aligned_cols=238 Identities=24% Similarity=0.210 Sum_probs=186.4
Q ss_pred cCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347 102 GNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181 (385)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L 181 (385)
..+++|++|++++|.+.+..|..|..+++|+.|++++|.+....+ +..+++|++|++++|.+.+.. ..++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~~~~L 101 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSI 101 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-------ECTTC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-------CCCCc
Confidence 345689999999999987777889999999999999999875544 888999999999999886431 23789
Q ss_pred ceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhh-cccCce
Q 043347 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALV-NCKSLK 260 (385)
Q Consensus 182 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~ 260 (385)
+.|++++|.+.+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.++...+ ..+. .+++|+
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~l~~L~ 172 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSDTLE 172 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCC
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh------HHHhhhCCccc
Confidence 9999999988754332 35789999999999887777778888999999999998876532 3343 678999
Q ss_pred EEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCC
Q 043347 261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340 (385)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 340 (385)
.|++++|.+.+..+.. . .++++.|++++|.+.+..+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 173 ~L~Ls~N~l~~~~~~~--~-l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQV--V-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp EEECTTSCCCEEECCC--C-CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred EEecCCCccccccccc--c-CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 9999999887653322 2 3788888888888875444 4778888888888888888 46667778888888888888
Q ss_pred ccc-CCChhhhhcCCCccEEEcc
Q 043347 341 KFE-GPIPHEFCHFSRLYKFYLN 362 (385)
Q Consensus 341 ~~~-~~~~~~~~~~~~L~~L~l~ 362 (385)
.+. +..+..+..++.|+.++++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 877 4556666777777777775
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-24 Score=198.19 Aligned_cols=238 Identities=24% Similarity=0.209 Sum_probs=187.1
Q ss_pred cCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcE
Q 043347 78 WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKT 157 (385)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 157 (385)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.. ...++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence 445689999999998887666788889999999999988875443 88889999999999887643 23488999
Q ss_pred EEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCccccc-CCCCccEEEecC
Q 043347 158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG-QLRNLERLGLQS 236 (385)
Q Consensus 158 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~ 236 (385)
|++++|.+.+..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++
T Consensus 104 L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 104 LHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 9999988865432 2467899999999988877777788889999999999988876666664 688999999999
Q ss_pred CcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCc
Q 043347 237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYN 316 (385)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 316 (385)
|.++..+ ....+++|+.|++++|.+.+..+. +..+ ++++.|++++|.+.+ +|..+..+++|+.|++++|
T Consensus 179 N~l~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l-~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 179 NFIYDVK--------GQVVFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp SCCCEEE--------CCCCCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred Ccccccc--------ccccCCCCCEEECCCCCCCCCCHh-HcCC-CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 9887653 234578899999999988865444 5555 789999999998884 5666788889999999999
Q ss_pred ccc-CCCccccccCCCCCeEecc
Q 043347 317 NLS-GSLPITLGRLKKLQGLDLQ 338 (385)
Q Consensus 317 ~~~-~~~~~~~~~~~~L~~L~l~ 338 (385)
.+. +..+..+..++.|+.+++.
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 887 4566667777777777775
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.3e-26 Score=220.54 Aligned_cols=365 Identities=17% Similarity=0.153 Sum_probs=238.7
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCC---C-----------hhhhcCCCcccEEEccCCcccCcCCC
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSF---P-----------DDMCEGLPRLKGLYVSYNQFKGPIPN 75 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~---~-----------~~~~~~~~~L~~L~l~~~~~~~~~~~ 75 (385)
+.+++.++... .....+..++.++ .|+++++.....+ | ..+...+++|++|+++++.+.+....
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~-~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVR-SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCC-EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCce-EEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence 35666554332 2223466778888 7999987422111 1 22344689999999999987755444
Q ss_pred Ccc-CCCCCcEEecccc-ccccc-CCCCccCcccccEEEeecccccCCCCccc----CCCcCCcEEEecccc--cccc-c
Q 043347 76 NLW-HCKELSRVSLSFN-QFTGR-IPRDLGNSTKLKLLYLSFNNLIGEIPQEI----GSLRNLEILRIDQNN--LVGF-I 145 (385)
Q Consensus 76 ~~~-~~~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~~-~ 145 (385)
.+. .+++|++|++++| .+... .+..+.++++|++|++++|.+.+..+..+ ..+++|+.|+++++. +... .
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence 554 6899999999998 44322 33344579999999999998776544443 367899999999886 2211 1
Q ss_pred CccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccc--------------------------cC----CCC
Q 043347 146 PDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNN--------------------------FS----GSI 195 (385)
Q Consensus 146 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------------~~----~~~ 195 (385)
...+..+++|+.|++++|.....++. .+..+++|++|+++.+. +. ...
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l 281 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLAT--LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHH--HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHH--HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhH
Confidence 22234679999999998833222221 13456667777654331 11 112
Q ss_pred CcccccCCcccEEEccCccccccC-cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccC--------
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLI-PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE-------- 266 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------- 266 (385)
+..+..+++|++|++++|.+.+.. ...+..+++|+.|++++| +... + +......+++|+.|++.+
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~--~---l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA--G---LEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH--H---HHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH--H---HHHHHHhCCCCCEEEEecCccccccc
Confidence 223346789999999998865432 233567899999999987 3321 1 222344589999999954
Q ss_pred -CCCCCCCCCcccccccceeEEEeeccccCCCCCcccc-CCCCccEEECc--C----ccccCC-----CccccccCCCCC
Q 043347 267 -NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG-NLINLTKLSLG--Y----NNLSGS-----LPITLGRLKKLQ 333 (385)
Q Consensus 267 -~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~ 333 (385)
+.+++.....+....+++++|.+.++.+.......+. .+++|++|+++ + +.+++. ++..+..+++|+
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 2333332222333237899998888877655444454 58999999999 3 344421 122356789999
Q ss_pred eEeccCCcccCCChhhhhc-CCCccEEEccCCcccccCCCcc-cccccCccccC
Q 043347 334 GLDLQNNKFEGPIPHEFCH-FSRLYKFYLNRNKLSGSIPSCL-GDLNSLRILSL 385 (385)
Q Consensus 334 ~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~i 385 (385)
.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ .++++|+.|++
T Consensus 436 ~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 436 RLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp EEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred EEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 999987 666555566665 8999999999999987665555 56888888753
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.5e-22 Score=169.15 Aligned_cols=200 Identities=24% Similarity=0.227 Sum_probs=137.5
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 20 ~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 20 SVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred EEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 5777777777 6666442 56777777777777665667777777777777777776444445567777777777777
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+....
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG--VFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--HccCCcccceeEecCCcCcEeC
Confidence 77655555667777777777777777766666667777777777777766533221 2556677777777777766555
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 5566667777777777777766555566677777777777776554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.8e-22 Score=172.89 Aligned_cols=205 Identities=24% Similarity=0.231 Sum_probs=94.4
Q ss_pred cccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEec
Q 043347 58 RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID 137 (385)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 137 (385)
+|++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555544444444555555555555555443333344455555555555555444444444455555555555
Q ss_pred ccccccccCccccCCCCCcEEEccCCccccc-CCCCcccCCCCCCceEEccccccCCCCCcccccCCccc----EEEccC
Q 043347 138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN-LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLY----YLELAY 212 (385)
Q Consensus 138 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 212 (385)
+|.+....+..+..+++|++|++++|.+... +|. .+..+++|++|++++|.+.+.....+..+++++ ++++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCch--hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 5544433333344445555555554444321 111 133444444444444444433333333333333 455555
Q ss_pred ccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347 213 NSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG 271 (385)
Q Consensus 213 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (385)
|.+....+..+. ..+|+.|++++|.++..+. ..+..+++|+.|++++|++.+
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCT------TTTTTCCSCCEEECCSSCBCC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCH------hHhcccccccEEEccCCcccc
Confidence 555433333222 2345555555555544322 223445555555555555543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.8e-22 Score=172.92 Aligned_cols=225 Identities=22% Similarity=0.219 Sum_probs=180.6
Q ss_pred EEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc
Q 043347 11 VLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF 90 (385)
Q Consensus 11 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 90 (385)
..+..+..+. .+|..+. ++++ +|+++++.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~-~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTK-NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCC-EEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCCC--CCcc-EEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 3455555555 5666543 3466 7999999998 66766667899999999999999877777899999999999999
Q ss_pred ccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccc-cCccccCCCCCcEEEccCCcccccC
Q 043347 91 NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTLSLLNNTLSGNL 169 (385)
Q Consensus 91 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~ 169 (385)
|.+....+..+.++++|++|++.+|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 999877778899999999999999998866666788999999999999998764 4788899999999999999887543
Q ss_pred CCCcccCCCCCCc----eEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347 170 PSSKKLIGLPNLE----GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243 (385)
Q Consensus 170 ~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 243 (385)
+.. +..++.|+ ++++++|.+.......+. ..+|++|++++|.++...+..+..+++|+.|++++|.+...-
T Consensus 166 ~~~--~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 166 CTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGG--GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HHH--hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 221 33444444 899999988755444444 348999999999998777777889999999999999887643
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=8.3e-22 Score=168.06 Aligned_cols=203 Identities=24% Similarity=0.264 Sum_probs=176.6
Q ss_pred cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347 8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS 87 (385)
Q Consensus 8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 87 (385)
+.++++++++.++ .+|..+. +.++ .|+++++.++ .++...+..+++|++|++++|.+.......|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~-~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTK-KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCS-EEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCC-EEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 5789999999998 6777654 4566 7999999999 88887778999999999999999877777789999999999
Q ss_pred cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccc
Q 043347 88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG 167 (385)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 167 (385)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999986666678899999999999999987777788999999999999999987777778899999999999999875
Q ss_pred cCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccc
Q 043347 168 NLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG 217 (385)
Q Consensus 168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (385)
..+. .+..+++|++|++++|.+.......+..+++|+.|++++|.+..
T Consensus 172 ~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEG--AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChh--HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 4332 27788999999999999987777778889999999999998753
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.2e-22 Score=170.78 Aligned_cols=187 Identities=25% Similarity=0.279 Sum_probs=114.3
Q ss_pred CCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcc
Q 043347 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC 256 (385)
Q Consensus 177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 256 (385)
.+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...+. ..+..+
T Consensus 61 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l 132 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD------GVFDKL 132 (272)
T ss_dssp GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTC
T ss_pred cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH------HHhccC
Confidence 344444444444444321 234445555555555555554444445555555555555555554322 234555
Q ss_pred cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347 257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336 (385)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 336 (385)
++|+.|++++|.+.+..+..+... +++++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 566666666665554444444444 5666777777766655555667778888888888888766666677788888888
Q ss_pred ccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccccccc
Q 043347 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNS 379 (385)
Q Consensus 337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 379 (385)
+++|.+. +.+++|+.+++++|.+++.+|..+..+..
T Consensus 212 l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 212 LHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8888776 23567777888888888777777665543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=4.3e-21 Score=164.96 Aligned_cols=203 Identities=24% Similarity=0.195 Sum_probs=103.3
Q ss_pred CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347 4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL 83 (385)
Q Consensus 4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 83 (385)
.+++++++++++++.++ .+|..+. +.++ .|++++|.++ .++...+..+++|++|++++|.+.+... ...+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~-~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTT-ILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCC-EEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCC-EEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 34555555555555555 4444332 2333 4555555555 3433344455555555555555543222 1344555
Q ss_pred cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347 84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163 (385)
Q Consensus 84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 163 (385)
++|++++|.+. .+|..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------- 143 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL--------------- 143 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT---------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh---------------
Confidence 55555555544 34444444555555555555544333344444445555555444444333333
Q ss_pred cccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347 164 TLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
+..+++|+.|++++|.+.......+..+++|+.|++++|.+.. .+..+...++|+.+++++|.+..
T Consensus 144 -----------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 144 -----------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -----------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred -----------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence 3344555555555555554444445556666666666666653 33444455667777777776544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.9e-21 Score=164.84 Aligned_cols=214 Identities=21% Similarity=0.178 Sum_probs=142.9
Q ss_pred EEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc
Q 043347 11 VLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF 90 (385)
Q Consensus 11 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 90 (385)
.+++.++.+.+. .....+.+++ .|+++++.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~-~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSID-QIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCC-EEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHhcCcccccc--ccccccccee-eeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 334444444322 2344566666 6777777776 4443 33577777777777776642 3567777777777777
Q ss_pred ccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCC
Q 043347 91 NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLP 170 (385)
Q Consensus 91 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 170 (385)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 77775555556777777777777777775555557777777777777777776555556777777777777777664322
Q ss_pred CCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347 171 SSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 171 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+++++.+++..|.+.+
T Consensus 175 ~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 175 G--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp T--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred H--HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence 2 2556777888888877777666666777788888888777654 335567777777666554
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.1e-20 Score=162.48 Aligned_cols=203 Identities=26% Similarity=0.229 Sum_probs=129.4
Q ss_pred ccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccc
Q 043347 28 FNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKL 107 (385)
Q Consensus 28 ~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 107 (385)
.++++++ .++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+....+ ...+++|
T Consensus 7 ~~l~~l~-~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 7 SKVASHL-EVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp ECSTTCC-EEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccCCcc-EEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 3444555 4666666555 5554442 455556666555554444455555555555555555542211 1344555
Q ss_pred cEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347 108 KLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG 187 (385)
Q Consensus 108 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 187 (385)
++|++++|.+. .+|. .+..+++|+.|++++|.+....+. .+..+++|++|+++
T Consensus 80 ~~L~Ls~N~l~-~l~~------------------------~~~~l~~L~~L~l~~N~l~~l~~~--~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPL------------------------LGQTLPALTVLDVSFNRLTSLPLG--ALRGLGELQELYLK 132 (290)
T ss_dssp CEEECCSSCCS-SCCC------------------------CTTTCTTCCEEECCSSCCCCCCSS--TTTTCTTCCEEECT
T ss_pred CEEECCCCcCC-cCch------------------------hhccCCCCCEEECCCCcCcccCHH--HHcCCCCCCEEECC
Confidence 55555555444 3333 344455555555555555432222 25566777777777
Q ss_pred ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCC
Q 043347 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN 267 (385)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (385)
+|.+....+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+...+. .+...+.|+.+++++|
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-------~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK-------GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCCCSEEECCSC
T ss_pred CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh-------hhcccccCCeEEeCCC
Confidence 777766666777889999999999999997777778899999999999999987644 4555679999999999
Q ss_pred CCCC
Q 043347 268 PVDG 271 (385)
Q Consensus 268 ~~~~ 271 (385)
++..
T Consensus 206 p~~C 209 (290)
T 1p9a_G 206 PWLC 209 (290)
T ss_dssp CBCC
T ss_pred CccC
Confidence 8864
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.1e-21 Score=160.75 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=92.7
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCc-ccCcCCCCccCCCCCcEEeccc-ccccccCCCCccCcccccEEEee
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ-FKGPIPNNLWHCKELSRVSLSF-NQFTGRIPRDLGNSTKLKLLYLS 113 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~ 113 (385)
+|+++++.++ .++...+..+++|++|++++|. +....+..|..+++|++|++++ |.+....+..+.++++|++|+++
T Consensus 35 ~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 35 TLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp EEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred EEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 4555555554 4444444445555555555553 4433333444555555555554 44443333344445555555555
Q ss_pred cccccCCCCcccCCCcCCc---EEEeccc-ccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCc-eEEccc
Q 043347 114 FNNLIGEIPQEIGSLRNLE---ILRIDQN-NLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE-GLILGL 188 (385)
Q Consensus 114 ~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~ 188 (385)
+|.+.+ +|. +..+++|+ .|++++| .+....+..+. .+++|+ ++++++
T Consensus 114 ~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--------------------------~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 114 NTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--------------------------GLCNETLTLKLYN 165 (239)
T ss_dssp EECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT--------------------------TTBSSEEEEECCS
T ss_pred CCCCcc-ccc-cccccccccccEEECCCCcchhhcCccccc--------------------------chhcceeEEEcCC
Confidence 554442 332 44444444 4444444 44433333344 444555 555555
Q ss_pred cccCCCCCcccccCCcccEEEccCcc-ccccCcccccCC-CCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccC
Q 043347 189 NNFSGSIPSFFFNASKLYYLELAYNS-FSGLIPKALGQL-RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE 266 (385)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (385)
|.+.......+.. ++|++|++++|+ +....+..+..+ ++|+.|++++|.++..+.. .+++|+.|++.+
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~ 235 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARN 235 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTT
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---------HhccCceeeccC
Confidence 5444222223333 456666666663 554444555555 6666666666665544321 345566666554
Q ss_pred C
Q 043347 267 N 267 (385)
Q Consensus 267 ~ 267 (385)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3e-23 Score=186.49 Aligned_cols=252 Identities=19% Similarity=0.183 Sum_probs=140.8
Q ss_pred CCCCccCcccccEEEeecccccCCCC----cccCCCcCCcEEEecccccc---cccCccccCCCCCcEEEccCCcccccC
Q 043347 97 IPRDLGNSTKLKLLYLSFNNLIGEIP----QEIGSLRNLEILRIDQNNLV---GFIPDTIFNMSTLKTLSLLNNTLSGNL 169 (385)
Q Consensus 97 ~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~l~l~~~~~~~~~ 169 (385)
++..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+. ...|..+..
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------ 85 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------ 85 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------
Confidence 44445556666666666666554322 22445666666666654332 111211100
Q ss_pred CCCcccCCCCCCceEEccccccCC----CCCcccccCCcccEEEccCccccccCcccc----cCC---------CCccEE
Q 043347 170 PSSKKLIGLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLELAYNSFSGLIPKAL----GQL---------RNLERL 232 (385)
Q Consensus 170 ~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L 232 (385)
-...+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+....+..+ ..+ ++|+.|
T Consensus 86 -l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 86 -LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp -HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred -HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 00012344555555555555443 123344556666666666666543222222 222 677777
Q ss_pred EecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCC-----CCCcccccccceeEEEeeccccC----CCCCcccc
Q 043347 233 GLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV-----LPSSIGNLSVSVEEIYMYKCNIH----GRIPKEIG 303 (385)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~l~~L~l~~~~~~----~~~~~~~~ 303 (385)
++++|.++... ...+...+..+++|+.|++++|.+... .+..+... ++++.|++++|.+. ..++..+.
T Consensus 165 ~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 165 ICGRNRLENGS--MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp ECCSSCCTGGG--HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred ECCCCCCCcHH--HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHc
Confidence 77777665321 112234566666777777777766521 22233333 56777777777764 34555667
Q ss_pred CCCCccEEECcCccccCC----Ccccccc--CCCCCeEeccCCcccC----CChhhh-hcCCCccEEEccCCcccccC
Q 043347 304 NLINLTKLSLGYNNLSGS----LPITLGR--LKKLQGLDLQNNKFEG----PIPHEF-CHFSRLYKFYLNRNKLSGSI 370 (385)
Q Consensus 304 ~~~~L~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 370 (385)
.+++|++|++++|.+.+. ++..+.. +++|+.|++++|.+++ .++..+ .++++|+.|++++|++++..
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 777888888888877643 3444433 7788888888888775 355555 44788888888888877554
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3.2e-22 Score=178.00 Aligned_cols=261 Identities=20% Similarity=0.201 Sum_probs=173.6
Q ss_pred EEecccccccccCCCCccCcccccEEEeecccccCCCC----cccCCCc-CCcEEEecccccccccCccccCC-----CC
Q 043347 85 RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP----QEIGSLR-NLEILRIDQNNLVGFIPDTIFNM-----ST 154 (385)
Q Consensus 85 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 154 (385)
.++++.+.+.+..|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677787776666666667779999999999886665 6677888 89999999998887666555554 88
Q ss_pred CcEEEccCCcccccCCCC--cccCCC-CCCceEEccccccCCCCCccc----cc-CCcccEEEccCccccccCcc----c
Q 043347 155 LKTLSLLNNTLSGNLPSS--KKLIGL-PNLEGLILGLNNFSGSIPSFF----FN-ASKLYYLELAYNSFSGLIPK----A 222 (385)
Q Consensus 155 L~~l~l~~~~~~~~~~~~--~~~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~ 222 (385)
|++|++++|.+.+..+.. ..+..+ ++|++|++++|.+.+.....+ .. +++|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999998876432211 013344 788888888888775444333 22 35888888888887754333 3
Q ss_pred ccCCC-CccEEEecCCcccccchhhhhhhHhhhcc-cCceEEEccCCCCCCCCCC----cccccccceeEEEeeccccCC
Q 043347 223 LGQLR-NLERLGLQSNYLTSSTSELMSLFSALVNC-KSLKVIVLAENPVDGVLPS----SIGNLSVSVEEIYMYKCNIHG 296 (385)
Q Consensus 223 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~~~~~~ 296 (385)
+...+ +|+.|++++|.++...... +...+..+ ++|+.|++++|.+.+.... .+....+++++|++++|.+.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAE--LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHH--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHH--HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 34444 8888888888877654322 33455666 4888888888887753322 222223477777887777765
Q ss_pred CCC----ccccCCCCccEEECcCccccCC-------CccccccCCCCCeEeccCCcccCCCh
Q 043347 297 RIP----KEIGNLINLTKLSLGYNNLSGS-------LPITLGRLKKLQGLDLQNNKFEGPIP 347 (385)
Q Consensus 297 ~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~ 347 (385)
..+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|++.+..+
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 433 2335567777777777774422 22244556667777777777765433
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.9e-22 Score=175.97 Aligned_cols=255 Identities=18% Similarity=0.185 Sum_probs=153.6
Q ss_pred CCcEEecccccccccCCCCccCc--ccccEEEeecccccCCCCcccCCCcCCcEEEecccccccc-cCccccCCCCCcEE
Q 043347 82 ELSRVSLSFNQFTGRIPRDLGNS--TKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTL 158 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l 158 (385)
.++.++++++.+. +..+..+ +.++.+++.++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4788899887665 3445555 7899999999888755444 56788999999998887654 55667788888888
Q ss_pred EccCCcccccCCCCcccCCCCCCceEEcccc-ccCC-CCCcccccCCcccEEEccCc-ccccc-CcccccCCC-CccEEE
Q 043347 159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLN-NFSG-SIPSFFFNASKLYYLELAYN-SFSGL-IPKALGQLR-NLERLG 233 (385)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~ 233 (385)
++++|.+.+..+. .+..+++|++|++++| .+++ ..+..+..+++|++|++++| .+++. .+..+..++ +|+.|+
T Consensus 124 ~L~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred eCcCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888876543322 2445677777777776 3432 13334555666777777666 55432 234455566 666666
Q ss_pred ecCCc--ccccchhhhhhhHhhhcccCceEEEccCCC-CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccE
Q 043347 234 LQSNY--LTSSTSELMSLFSALVNCKSLKVIVLAENP-VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTK 310 (385)
Q Consensus 234 l~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~ 310 (385)
+++|. +++. . +...+..+++|+.|++++|. +++. .+..+..+++|++
T Consensus 202 l~~~~~~~~~~--~---l~~~~~~~~~L~~L~l~~~~~l~~~-------------------------~~~~l~~l~~L~~ 251 (336)
T 2ast_B 202 LSGYRKNLQKS--D---LSTLVRRCPNLVHLDLSDSVMLKND-------------------------CFQEFFQLNYLQH 251 (336)
T ss_dssp CCSCGGGSCHH--H---HHHHHHHCTTCSEEECTTCTTCCGG-------------------------GGGGGGGCTTCCE
T ss_pred eCCCcccCCHH--H---HHHHHhhCCCCCEEeCCCCCcCCHH-------------------------HHHHHhCCCCCCE
Confidence 66663 2211 0 22344556666666666655 3333 3334555566777
Q ss_pred EECcCcc-ccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccc
Q 043347 311 LSLGYNN-LSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG 375 (385)
Q Consensus 311 L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 375 (385)
|++++|. +.......+..+++|+.|++++| +++.....+.. ++..|++++|+++++.|..+.
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--HSTTSEESCCCSCCTTCSSCS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--hCcceEEecccCccccCCccc
Confidence 7776663 22222224556677777777777 44333333322 233444666777766665544
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.5e-22 Score=180.24 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=167.0
Q ss_pred EEecCccccCCCCcccccccceeceeEeecCccccCCCh----hhhcCCC-cccEEEccCCcccCcCCCCccCC-----C
Q 043347 12 LVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPD----DMCEGLP-RLKGLYVSYNQFKGPIPNNLWHC-----K 81 (385)
Q Consensus 12 L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~ 81 (385)
..++.+.+.+.+|..+....+++ +|++++|.++ ..+. ..+..++ +|++|++++|.+.+..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~-~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVT-SLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCC-EEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCce-EEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 46777777766665555555576 7888888888 5554 4555677 78888888888876555555553 8
Q ss_pred CCcEEecccccccccCCCCc----cCc-ccccEEEeecccccCCCCccc----CC-CcCCcEEEecccccccccC----c
Q 043347 82 ELSRVSLSFNQFTGRIPRDL----GNS-TKLKLLYLSFNNLIGEIPQEI----GS-LRNLEILRIDQNNLVGFIP----D 147 (385)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~----~ 147 (385)
+|++|++++|.+.+..+..+ ..+ ++|++|++++|.+.+..+..+ .. ..+|++|++++|.+..... .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 88888888888775544433 334 788888888888776555443 33 3588888888888774332 3
Q ss_pred cccCCC-CCcEEEccCCcccccCCCC--cccCCC-CCCceEEccccccCCCC----Cccccc-CCcccEEEccCcccccc
Q 043347 148 TIFNMS-TLKTLSLLNNTLSGNLPSS--KKLIGL-PNLEGLILGLNNFSGSI----PSFFFN-ASKLYYLELAYNSFSGL 218 (385)
Q Consensus 148 ~~~~l~-~L~~l~l~~~~~~~~~~~~--~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~ 218 (385)
.+...+ +|++|++++|.+.+..+.. ..+... ++|++|++++|.+.+.. +..+.. .++|++|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 7888888888775432211 113344 47888888888776422 223333 35788888888877654
Q ss_pred Cc----ccccCCCCccEEEecCCcccccchh-hhhhhHhhhcccCceEEEccCCCCCCC
Q 043347 219 IP----KALGQLRNLERLGLQSNYLTSSTSE-LMSLFSALVNCKSLKVIVLAENPVDGV 272 (385)
Q Consensus 219 ~~----~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (385)
.. ..+..+++|+.|++++|.+...... ...+...+..+++|+.|++++|.+.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 3345667788888888775555443 233344566777777777777776654
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.6e-22 Score=178.46 Aligned_cols=220 Identities=17% Similarity=0.185 Sum_probs=112.5
Q ss_pred eeEeecCccccCCChhhhcCC--CcccEEEccCCcccCcCCCCccCCCCCcEEeccccccccc-CCCCccCcccccEEEe
Q 043347 36 GLDFSNNSLTGSFPDDMCEGL--PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR-IPRDLGNSTKLKLLYL 112 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l 112 (385)
.++++++.+. +..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++
T Consensus 51 ~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 51 TLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp EEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 5666665544 1222233 5666666666666544333 34566666666666655433 4445556666666666
Q ss_pred ecccccCCCCcccCCCcCCcEEEeccc-ccccc-cCccccCCCCCcEEEccCC-ccccc-CCCCcccCCCC-CCceEEcc
Q 043347 113 SFNNLIGEIPQEIGSLRNLEILRIDQN-NLVGF-IPDTIFNMSTLKTLSLLNN-TLSGN-LPSSKKLIGLP-NLEGLILG 187 (385)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~~-~L~~L~l~ 187 (385)
++|.+.+..+..++.+++|++|++++| .++.. .+..+..+++|++|++++| .+.+. ++ ..+..++ +|++|+++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLS 203 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeC
Confidence 666655455555666666666666666 34431 3334555666666666665 44321 11 1133455 56666665
Q ss_pred ccc--cC-CCCCcccccCCcccEEEccCcc-ccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEE
Q 043347 188 LNN--FS-GSIPSFFFNASKLYYLELAYNS-FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIV 263 (385)
Q Consensus 188 ~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 263 (385)
+|. ++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. ...+. ....+..+++|+.|+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~---~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPE---TLLELGEIPTLKTLQ 278 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGG---GGGGGGGCTTCCEEE
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHH---HHHHHhcCCCCCEEe
Confidence 552 22 1122334445556666665555 343334445555556666655553 11111 112344455555555
Q ss_pred ccCC
Q 043347 264 LAEN 267 (385)
Q Consensus 264 l~~~ 267 (385)
+++|
T Consensus 279 l~~~ 282 (336)
T 2ast_B 279 VFGI 282 (336)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 5554
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.8e-20 Score=154.23 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=140.1
Q ss_pred CcccEEEecCccccCCCCcccccccceeceeEeecCc-cccCCChhhhcCCCcccEEEccC-CcccCcCCCCccCCCCCc
Q 043347 7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNS-LTGSFPDDMCEGLPRLKGLYVSY-NQFKGPIPNNLWHCKELS 84 (385)
Q Consensus 7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~ 84 (385)
+++++|++++|.+++..+..+.++++++ +|++++|. ++ .++...+..+++|++|++++ |.+.+..+..|..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~-~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNIS-RIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCC-EEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCc-EEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3799999999999855555788999999 79999997 88 88888888999999999998 999877778899999999
Q ss_pred EEecccccccccCCCCccCccccc---EEEeecc-cccCCCCcccCCCcCCc-EEEecccccccccCccccCCCCCcEEE
Q 043347 85 RVSLSFNQFTGRIPRDLGNSTKLK---LLYLSFN-NLIGEIPQEIGSLRNLE-ILRIDQNNLVGFIPDTIFNMSTLKTLS 159 (385)
Q Consensus 85 ~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~l~ 159 (385)
+|++++|.+.+ +|. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|.++...+..+.. ++|+.++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 99999999884 665 78888888 9999999 88866666799999999 9999999987444443434 6778888
Q ss_pred ccCCc-ccccCCCCcccCCC-CCCceEEccccccC
Q 043347 160 LLNNT-LSGNLPSSKKLIGL-PNLEGLILGLNNFS 192 (385)
Q Consensus 160 l~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 192 (385)
+++|+ +....+. .+..+ ++|+.|++++|.++
T Consensus 186 L~~n~~l~~i~~~--~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 186 LNKNKYLTVIDKD--AFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCTTCCEECTT--TTTTCSBCCSEEECTTCCCC
T ss_pred cCCCCCcccCCHH--HhhccccCCcEEECCCCccc
Confidence 77774 5432121 14444 55555555555444
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=4.9e-23 Score=185.13 Aligned_cols=268 Identities=22% Similarity=0.235 Sum_probs=164.2
Q ss_pred cCCCCccCCCCCcEEecccccccccC----CCCccCcccccEEEeecccc---cCCCCccc-------CCCcCCcEEEec
Q 043347 72 PIPNNLWHCKELSRVSLSFNQFTGRI----PRDLGNSTKLKLLYLSFNNL---IGEIPQEI-------GSLRNLEILRID 137 (385)
Q Consensus 72 ~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~ 137 (385)
.+...+..+++|++|++++|.+.... +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45556778899999999999887543 34577899999999998643 33344444 688999999999
Q ss_pred cccccc----ccCccccCCCCCcEEEccCCcccccCCCC--cccCCC---------CCCceEEccccccCC-CCC---cc
Q 043347 138 QNNLVG----FIPDTIFNMSTLKTLSLLNNTLSGNLPSS--KKLIGL---------PNLEGLILGLNNFSG-SIP---SF 198 (385)
Q Consensus 138 ~~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~~~---------~~L~~L~l~~~~~~~-~~~---~~ 198 (385)
+|.+.. .++..+..+++|++|++++|.+....+.. ..+..+ ++|++|++++|.+.. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999876 35566778899999999998875321110 001122 566777777666542 111 23
Q ss_pred cccCCcccEEEccCcccccc-----CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC
Q 043347 199 FFNASKLYYLELAYNSFSGL-----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273 (385)
Q Consensus 199 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 273 (385)
+..+++|++|++++|.+... .+..+..+++|+.|++++|.++..+ ...+...+..+++|+.|++++|.+.+..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 44556666666666655421 1124455666666666666554321 1113344555566666666665554321
Q ss_pred CCcccccccceeEEEeeccccCCCCCccc--cCCCCccEEECcCccccC----CCcccc-ccCCCCCeEeccCCcccCCC
Q 043347 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEI--GNLINLTKLSLGYNNLSG----SLPITL-GRLKKLQGLDLQNNKFEGPI 346 (385)
Q Consensus 274 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 346 (385)
.. .++..+ +.+++|++|++++|.+.+ .++..+ ..+++|+.|++++|++++..
T Consensus 261 ~~---------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AA---------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HH---------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HH---------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 11 022333 236778888888887775 255555 45788888888888887665
Q ss_pred h--hhhhc-CCCccEEEcc
Q 043347 347 P--HEFCH-FSRLYKFYLN 362 (385)
Q Consensus 347 ~--~~~~~-~~~L~~L~l~ 362 (385)
+ ..+.. +++++.+++.
T Consensus 320 ~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 320 DVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHHHTCCEEC
T ss_pred hHHHHHHHHhhhcCcchhh
Confidence 3 33332 4554444443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.7e-19 Score=152.02 Aligned_cols=176 Identities=22% Similarity=0.208 Sum_probs=110.5
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 18 ~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 18 EVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp EEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4666666666 5555442 45666666666666555556666666666666666666555555666666666666666
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+....
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--AFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH--HcCcCcCCCEEECCCCcCCccC
Confidence 66655555566666666666666666655445556666677777766666533221 2556667777777777766555
Q ss_pred CcccccCCcccEEEccCccccc
Q 043347 196 PSFFFNASKLYYLELAYNSFSG 217 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~ 217 (385)
+..+..+++|+.|++++|.+..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5566677777777777777654
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=2.9e-19 Score=150.57 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=151.8
Q ss_pred CcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEe
Q 043347 57 PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRI 136 (385)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 136 (385)
+..++++++++.+. .++..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45688999998887 4454444 68999999999998777778999999999999999998777777899999999999
Q ss_pred cccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccc
Q 043347 137 DQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216 (385)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (385)
++|.+....+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh--HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999877777788899999999999988744332 2667888999999999888766667888889999999998888
Q ss_pred ccCcccccCCCCccEEEecCCcccccchhh
Q 043347 217 GLIPKALGQLRNLERLGLQSNYLTSSTSEL 246 (385)
Q Consensus 217 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 246 (385)
...+..+..+++|+.|++++|.+.......
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 198 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTTSTTH
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCCcccc
Confidence 776677888888999999888877653433
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=164.60 Aligned_cols=233 Identities=16% Similarity=0.153 Sum_probs=140.1
Q ss_pred ccccEEEeecccccCCCCc---ccCCCcCCcEEEecccccccccCccc--cCCCCCcEEEccCCcccccCCCC--cccCC
Q 043347 105 TKLKLLYLSFNNLIGEIPQ---EIGSLRNLEILRIDQNNLVGFIPDTI--FNMSTLKTLSLLNNTLSGNLPSS--KKLIG 177 (385)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~--~~~~~ 177 (385)
..++.+.+.++.+...... .+..+++|++|++++|.+....+..+ ..+++|++|++++|.+.+..+.. ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466777766554321100 01134568888888888776666666 77788888888888776432211 11335
Q ss_pred CCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc----CcccccCCCCccEEEecCCcccccchhhhhhhH-h
Q 043347 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFS-A 252 (385)
Q Consensus 178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~ 252 (385)
+++|++|++++|.+....+..+..+++|++|++++|++... ....+..+++|+.|++++|.++..+. ... .
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~l 219 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----VCAAL 219 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----HHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----HHHHH
Confidence 67777777777777666666677777777777777765321 11223566777777777777654322 111 2
Q ss_pred hhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCC
Q 043347 253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKL 332 (385)
Q Consensus 253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 332 (385)
+..+++|+.|++++|.+.+..|..+... ..+++|++|++++|.++ .+|..+. ++|
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~----------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L 274 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRC----------------------MWSSALNSLNLSFAGLE-QVPKGLP--AKL 274 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSC----------------------CCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhc----------------------cCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence 4566677777777776665544433222 11256777777777666 4454443 667
Q ss_pred CeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347 333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 368 (385)
+.|++++|++++. +. +..+++|+.|++++|+++.
T Consensus 275 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7777777777642 22 4556777777777777653
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=4.9e-20 Score=159.95 Aligned_cols=197 Identities=24% Similarity=0.320 Sum_probs=141.0
Q ss_pred cccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccc
Q 043347 27 IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTK 106 (385)
Q Consensus 27 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 106 (385)
..++++++ +|+++++.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ . ..+..+++
T Consensus 37 ~~~l~~L~-~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGIT-TLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQS 108 (308)
T ss_dssp HHHHHTCC-EEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTT
T ss_pred HHHcCCcC-EEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCC
Confidence 34566666 6888887777 5552 3467788888888887764333 7777888888888887763 2 35777788
Q ss_pred ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347 107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186 (385)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l 186 (385)
|++|++++|.+.+ ++ .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEEC
Confidence 8888888887764 33 37778888888888887764432 6777888888888887764221 567788888888
Q ss_pred cccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243 (385)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 243 (385)
++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.++..+
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred CCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 8887764332 677888888888888887554 3778888888888888876643
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9.9e-20 Score=158.04 Aligned_cols=194 Identities=21% Similarity=0.273 Sum_probs=123.9
Q ss_pred cCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCc
Q 043347 125 IGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK 204 (385)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 204 (385)
+..+++|+.|+++++.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 34577888888888877643 2 56777888888888877664322 56677777887777776643 34666777
Q ss_pred ccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccce
Q 043347 205 LYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSV 284 (385)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 284 (385)
|++|++++|.+.+.. .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ +..+ +++
T Consensus 109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L 175 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--------PLAGLTNLQYLSIGNAQVSDLTP--LANL-SKL 175 (308)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCGG--GTTC-TTC
T ss_pred CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc--------cccCCCCccEEEccCCcCCCChh--hcCC-CCC
Confidence 777777777776432 3667777777777777766542 25566777777777776664332 3333 566
Q ss_pred eEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347 285 EEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 285 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (385)
+.|++++|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|+++
T Consensus 176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 666666666653322 555666666666666665332 2556666666666666665
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=158.90 Aligned_cols=230 Identities=18% Similarity=0.142 Sum_probs=156.7
Q ss_pred CCCCcEEecccccccccCCC---CccCcccccEEEeecccccCCCCccc--CCCcCCcEEEecccccccccC----cccc
Q 043347 80 CKELSRVSLSFNQFTGRIPR---DLGNSTKLKLLYLSFNNLIGEIPQEI--GSLRNLEILRIDQNNLVGFIP----DTIF 150 (385)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~ 150 (385)
...++.+.+..+.+...... ....+++|++|++++|.+.+..|..+ ..+++|++|++++|.+....+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34577788777665421111 12235679999999999988888887 899999999999999875433 3345
Q ss_pred CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC----CCcccccCCcccEEEccCccccccCc--c-cc
Q 043347 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFSGLIP--K-AL 223 (385)
Q Consensus 151 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~ 223 (385)
.+++|++|++++|.+....+.. +..+++|++|++++|.+.+. ....+..+++|++|++++|+++.... . .+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQ--VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTS--CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHH--hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 7899999999999997554433 77899999999999986421 13344678999999999999864321 1 34
Q ss_pred cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc
Q 043347 224 GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG 303 (385)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~ 303 (385)
..+++|+.|++++|.+....+.. ...+..+++|+.|++++|.+. ..|.. +.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~---~~~~~~~~~L~~L~Ls~N~l~-~lp~~-------------------------~~ 271 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPS---APRCMWSSALNSLNLSFAGLE-QVPKG-------------------------LP 271 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSC---CSSCCCCTTCCCEECCSSCCC-SCCSC-------------------------CC
T ss_pred hcCCCCCEEECCCCCCCccchhh---HHhccCcCcCCEEECCCCCCC-chhhh-------------------------hc
Confidence 67899999999999988752210 112222367777777777666 22322 21
Q ss_pred CCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347 304 NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG 344 (385)
Q Consensus 304 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 344 (385)
++|++|++++|.+++. +. +..+++|+.|++++|++++
T Consensus 272 --~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred --CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 4566666666666532 22 4555666666666666653
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.5e-18 Score=152.06 Aligned_cols=240 Identities=17% Similarity=0.150 Sum_probs=111.2
Q ss_pred cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccccc-CccccCCCCCcE-EEcc
Q 043347 84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFI-PDTIFNMSTLKT-LSLL 161 (385)
Q Consensus 84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-l~l~ 161 (385)
++++.+++.++ .+|..+ .+++++|++++|.++...+.+|..+++|++|++++|.+.... +..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34444554444 444443 245556666665555333344555555565555555543322 233444544443 2233
Q ss_pred CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecC-Cccc
Q 043347 162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS-NYLT 240 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~ 240 (385)
.|.+. ...+..+..+++|++|++++|++....+..+.....+..+++.+ +.+.
T Consensus 89 ~N~l~--------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 89 ANNLL--------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp ETTCC--------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred CCccc--------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 34433 33333444444444444444444433333333334444444433 2233
Q ss_pred ccchhhhhhhHhhhcc-cCceEEEccCCCCCCCCCCcccccccceeEEEeecc-ccCCCCCccccCCCCccEEECcCccc
Q 043347 241 SSTSELMSLFSALVNC-KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC-NIHGRIPKEIGNLINLTKLSLGYNNL 318 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (385)
..+. ..+..+ ..++.|++++|.+....+..+ .. .+++++.+.++ .+....+.+|..+++|+.|++++|.+
T Consensus 143 ~l~~------~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 143 TIER------NSFVGLSFESVILWLNKNGIQEIHNSAF-NG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp EECT------TSSTTSBSSCEEEECCSSCCCEECTTSS-TT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred cccc------cchhhcchhhhhhccccccccCCChhhc-cc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 2221 122222 235555555555553322222 22 35666666543 33333334556666777777777766
Q ss_pred cCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCC
Q 043347 319 SGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN 364 (385)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (385)
+...+.. +.+|+.|.+.++.-.+.+| .+..+++|+.+++.++
T Consensus 215 ~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 215 HSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 6322222 3455555554443333444 2555667777776553
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1e-18 Score=154.56 Aligned_cols=202 Identities=18% Similarity=0.141 Sum_probs=115.6
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc-CCCCccCCCCCcE-Ee
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP-IPNNLWHCKELSR-VS 87 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-L~ 87 (385)
++++.+++.++ .+|..+. .+++ +|++++|+++ .+|.++|.++++|++|++++|.+.+. ...+|..+++++. +.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~-~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAI-ELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCS-EEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCC-EEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 55666666666 5665542 2344 6777777777 67766666677777777777766443 3345666666554 34
Q ss_pred cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecc-cccccccCccccCCC-CCcEEEccCCcc
Q 043347 88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMS-TLKTLSLLNNTL 165 (385)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~-~L~~l~l~~~~~ 165 (385)
+..|.+....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 445666655556667777777777777766644444455555666666654 344444344444443 466666666666
Q ss_pred cccCCCCcccCCCCCCceEEccc-cccCCCCCcccccCCcccEEEccCccccccC
Q 043347 166 SGNLPSSKKLIGLPNLEGLILGL-NNFSGSIPSFFFNASKLYYLELAYNSFSGLI 219 (385)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 219 (385)
....+.. + ....|+++.+.+ +.+.....+.|..+++|++|++++|+++...
T Consensus 167 ~~i~~~~--f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 167 QEIHNSA--F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp CEECTTS--S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred cCCChhh--c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 5332221 2 234556666653 3344334445566666666666666665443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.9e-18 Score=139.42 Aligned_cols=177 Identities=21% Similarity=0.207 Sum_probs=83.1
Q ss_pred eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc
Q 043347 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN 116 (385)
Q Consensus 37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 116 (385)
++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 12 v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 12 VECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 444444444 444332 2344555555555443333344445555555555554443333334445555555555555
Q ss_pred ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCC
Q 043347 117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP 196 (385)
Q Consensus 117 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 196 (385)
+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSCCBC----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH--HHhccCCCccEEEecCCCee----
Confidence 443333334455555555555555544333344455555555555554442211 11344555555555555332
Q ss_pred cccccCCcccEEEccCccccccCcccccCC
Q 043347 197 SFFFNASKLYYLELAYNSFSGLIPKALGQL 226 (385)
Q Consensus 197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 226 (385)
..+++++.|+++.|.+++..+..++.+
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 234455555555555555555444433
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=4.6e-18 Score=138.96 Aligned_cols=182 Identities=23% Similarity=0.226 Sum_probs=145.6
Q ss_pred ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347 9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL 88 (385)
Q Consensus 9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 88 (385)
-+.++.+++.++ .+|..+. ++++ +|+++++.++ .++..++..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~~--~~l~-~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGIP--AQTT-YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCS-EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCcc-CCCCCCC--CCCc-EEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 367778887776 5665542 3566 7999999998 778777778999999999999988766667888999999999
Q ss_pred ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccccc
Q 043347 89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN 168 (385)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 168 (385)
++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence 999888555556788999999999999888666666888999999999999888766666888999999999988654
Q ss_pred CCCCcccCCCCCCceEEccccccCCCCCcccccCCc
Q 043347 169 LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK 204 (385)
Q Consensus 169 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 204 (385)
..++.|+.|++..+.+++..+..++.++.
T Consensus 162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 24567888888888888777766665443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.1e-17 Score=143.77 Aligned_cols=171 Identities=24% Similarity=0.371 Sum_probs=87.7
Q ss_pred cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCc
Q 043347 150 FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNL 229 (385)
Q Consensus 150 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 229 (385)
..+++|+.+++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~---~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T---TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred hhcCcccEEEccCCCcccC-h---hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence 3566677777776665432 2 14456666666666666654322 55666666666666665532 235566666
Q ss_pred cEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCcc
Q 043347 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLT 309 (385)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~ 309 (385)
+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+ ++++.|++++|++.+..+ +..+++|+
T Consensus 115 ~~L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 115 KSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp CEEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CEEECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCccccchh--hcCCCccC
Confidence 6666666665542 2344555666666666555433 222222 344444444444443222 44444444
Q ss_pred EEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347 310 KLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 310 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (385)
+|++++|.+.+ ++ .+..+++|+.|++++|+++
T Consensus 182 ~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 182 NLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred EEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 44444444442 22 2344444444444444444
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.5e-17 Score=135.49 Aligned_cols=151 Identities=23% Similarity=0.267 Sum_probs=105.5
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5677777777 6666542 56777777777777666667777777777777777777666677777777777777777
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS 192 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 192 (385)
.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG--TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH--HHhCCCCCCEEEeCCCCcC
Confidence 77744444566777777777777777766666777777777777777777644332 2556777777777777654
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.8e-17 Score=135.22 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=85.4
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCC-CCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIP-NNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF 114 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 114 (385)
.++++++.++ .+|..+. +.+++|++++|.+.+..+ ..|..+++|++|++++|.+....+..+.++++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4566666555 5554332 234566666665554422 3355566666666666665544444556666666666666
Q ss_pred ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS 192 (385)
Q Consensus 115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 192 (385)
|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA--FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT--TTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH--hcCCCCCCEEEecCcCCc
Confidence 6665444445566666666666666665555555666666666666666655443322 445666666666666544
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.9e-17 Score=133.97 Aligned_cols=154 Identities=18% Similarity=0.280 Sum_probs=121.6
Q ss_pred ccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccc
Q 043347 200 FNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN 279 (385)
Q Consensus 200 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 279 (385)
..++++++|++++|.+... + .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATNY--------NPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSCC--------GGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCcc--------hhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 5567788888888887743 3 477788888888888866543 35777888888889888888766777776
Q ss_pred cccceeEEEeeccccCCCCCccccCCCCccEEECcCcc-ccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccE
Q 043347 280 LSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNN-LSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK 358 (385)
Q Consensus 280 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 358 (385)
+ +++++|++++|++.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|++++. + .+..+++|+.
T Consensus 111 l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~ 185 (197)
T 4ezg_A 111 L-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ 185 (197)
T ss_dssp C-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred C-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence 6 789999999999887777888899999999999998 55 455 688899999999999999853 3 6778999999
Q ss_pred EEccCCcccc
Q 043347 359 FYLNRNKLSG 368 (385)
Q Consensus 359 L~l~~~~~~~ 368 (385)
|++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999998864
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=134.26 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=120.0
Q ss_pred ccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcc
Q 043347 26 SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNST 105 (385)
Q Consensus 26 ~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 105 (385)
+..++++++ +|+++++.++ .+| . +..+++|++|++++|.+. ....+..+++|++|++++|.+.+..+..+..++
T Consensus 39 ~~~~l~~L~-~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 39 TEAQMNSLT-YITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp BHHHHHTCC-EEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred ChhhcCCcc-EEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 335677777 7899988888 777 3 347888999999888654 234678888999999999888866778888889
Q ss_pred cccEEEeecccccCCCCcccCCCcCCcEEEecccc-cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceE
Q 043347 106 KLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN-LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL 184 (385)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L 184 (385)
+|++|++++|.+.+..+..+..+++|+.|++++|. +.. .+ .+..+++|+.|++++|.+.+. + .+..+++|+.|
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~---~l~~l~~L~~L 186 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R---GIEDFPKLNQL 186 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T---TGGGCSSCCEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H---HhccCCCCCEE
Confidence 99999999988887677778888999999999887 553 33 578888999999998887642 2 36678889999
Q ss_pred EccccccC
Q 043347 185 ILGLNNFS 192 (385)
Q Consensus 185 ~l~~~~~~ 192 (385)
++++|.+.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 99888764
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.2e-17 Score=141.99 Aligned_cols=174 Identities=27% Similarity=0.329 Sum_probs=122.9
Q ss_pred cccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccc
Q 043347 27 IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTK 106 (385)
Q Consensus 27 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 106 (385)
...+++++ .|+++++.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. . ..+..+++
T Consensus 42 ~~~l~~L~-~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSID-QIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKK 113 (291)
T ss_dssp HHHHHTCC-EEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred hhhcCccc-EEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence 34566666 6788877777 5543 3467788888888877764433 7777888888888877763 2 34777788
Q ss_pred ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347 107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186 (385)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l 186 (385)
|++|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L 185 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYL 185 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEEC
Confidence 88888888777642 4567778888888888877654 557777888888888887764322 567788888888
Q ss_pred cccccCCCCCcccccCCcccEEEccCcccccc
Q 043347 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGL 218 (385)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 218 (385)
++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 186 ~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 186 SKNHISDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred CCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence 88877643 2367788888888888877653
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.1e-17 Score=152.81 Aligned_cols=173 Identities=24% Similarity=0.363 Sum_probs=115.1
Q ss_pred ccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCC
Q 043347 149 IFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRN 228 (385)
Q Consensus 149 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 228 (385)
+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKK 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTT
T ss_pred hhcCCCCCEEECcCCCCCCC-h---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCC
Confidence 45677888888888776532 2 26677888888888887765433 67778888888888877643 25677788
Q ss_pred ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL 308 (385)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L 308 (385)
|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+ ++|+.|++++|.+.+..+ +..+++|
T Consensus 111 L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp CCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred CCEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCCcCCCchh--hccCCCC
Confidence 88888888877653 2466677777777777777654 333443 566666666666654433 5666666
Q ss_pred cEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347 309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG 344 (385)
Q Consensus 309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 344 (385)
+.|++++|.+.+ + ..+..+++|+.|++++|++.+
T Consensus 178 ~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 178 QNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred CEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence 666666666653 2 245566666666666666653
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=9.6e-17 Score=149.35 Aligned_cols=186 Identities=22% Similarity=0.277 Sum_probs=129.8
Q ss_pred CCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEE
Q 043347 130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLE 209 (385)
Q Consensus 130 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 209 (385)
+++.|++++|.++. +|..+ .++|+.|++++|.+. .+| ..+++|+.|++++|.++. ++. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 88889998888875 45444 378888888888876 444 246788888888888775 333 433 788888
Q ss_pred ccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEe
Q 043347 210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289 (385)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l 289 (385)
+++|.++.. +. .+++|+.|++++|.++..+. .+++|+.|++++|.+.+ .|. +. ++|+.|++
T Consensus 127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----------~l~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~L 187 (571)
T 3cvr_A 127 VDNNQLTML-PE---LPALLEYINADNNQLTMLPE----------LPTSLEVLSVRNNQLTF-LPE-LP---ESLEALDV 187 (571)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred CCCCcCCCC-CC---cCccccEEeCCCCccCcCCC----------cCCCcCEEECCCCCCCC-cch-hh---CCCCEEEC
Confidence 888887753 33 56788888888887776432 35678888888887776 343 32 67888888
Q ss_pred eccccCCCCCccccCCCCc-------cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhc
Q 043347 290 YKCNIHGRIPKEIGNLINL-------TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352 (385)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 352 (385)
++|++. .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus 188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 888776 3444 433 56 77888887777 56666666777888888888777666666655
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=1.2e-16 Score=131.35 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=96.4
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
+.++++++.++ .+|..+. ..++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~-~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETIT-EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCC-EEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCC-EEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45666666665 5555443 3444 5777777666 5555555566677777777776665556666667777777777
Q ss_pred cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL 165 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 165 (385)
+|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.+++++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 7766643334456667777777777766655566666667777777777766655555566666777777766655
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.2e-16 Score=130.74 Aligned_cols=150 Identities=23% Similarity=0.166 Sum_probs=121.0
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 23 ~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 6888888888 8887653 78889999999888777788888899999999998887554456788899999999998
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS 192 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 192 (385)
.+....+..+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+....+ ..+..+++|+.|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCCcc
Confidence 888666666788899999999998887 566777888999999999988874432 23677888999999988765
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.2e-17 Score=144.73 Aligned_cols=288 Identities=12% Similarity=0.049 Sum_probs=163.9
Q ss_pred CCcccEEEccCCcccCcCCCCccC-CCCCcEEeccccccc--ccCCCCccCcccccEEEeecccccCCCCcccCC-----
Q 043347 56 LPRLKGLYVSYNQFKGPIPNNLWH-CKELSRVSLSFNQFT--GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGS----- 127 (385)
Q Consensus 56 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~----- 127 (385)
++++++|.++++- .......+.. +++|++|++++|.+. ..... .++.++.+....+.+ ...+|..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 4567777777642 1111112223 677888888888765 22111 122234444444422 2234555
Q ss_pred ---CcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccc----cCCCCCcccc
Q 043347 128 ---LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNN----FSGSIPSFFF 200 (385)
Q Consensus 128 ---l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~ 200 (385)
|++|+.+++.+ .++......|..+++|+.++++.+.+...-+ .+|..+..+..+...... ...+....+.
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~--~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP--EALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT--TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch--hhhcCCCceEEecCcchhhhhccccccccccc
Confidence 77777777766 6665666667777777777777666543322 224455445444443311 1111222233
Q ss_pred cCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc
Q 043347 201 NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL 280 (385)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 280 (385)
.+..++. .+.+.... ..+.. .........++..+.+.+.-. ......+...
T Consensus 174 ~~~~L~~-----------------------~i~~~~~~--~l~~~---~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~ 224 (329)
T 3sb4_A 174 EGEPLET-----------------------TIQVGAMG--KLEDE---IMKAGLQPRDINFLTIEGKLD-NADFKLIRDY 224 (329)
T ss_dssp ESCCCEE-----------------------EEEECTTC--CHHHH---HHHTTCCGGGCSEEEEEECCC-HHHHHHHHHH
T ss_pred cccccce-----------------------eEEecCCC--cHHHH---HhhcccCccccceEEEeeeec-HHHHHHHHHh
Confidence 3333331 22222111 00000 001111223334444433211 0111111111
Q ss_pred ccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCC-eEeccCCcccCCChhhhhcCCCccEE
Q 043347 281 SVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQ-GLDLQNNKFEGPIPHEFCHFSRLYKF 359 (385)
Q Consensus 281 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 359 (385)
+++++++++.+|++......+|.+|++|+++++.++ +......+|.+|++|+ .+++.+ .++...+.+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 256677777776666666677889999999999987 6656677889999999 999988 6776778889999999999
Q ss_pred EccCCcccccCCCcccccccCcccc
Q 043347 360 YLNRNKLSGSIPSCLGDLNSLRILS 384 (385)
Q Consensus 360 ~l~~~~~~~~~~~~~~~l~~L~~l~ 384 (385)
++++++++.+.+.+|.+|++|+.|.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 9999999988899999999999874
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=3.2e-17 Score=154.22 Aligned_cols=147 Identities=29% Similarity=0.381 Sum_probs=59.4
Q ss_pred CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347 55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL 134 (385)
Q Consensus 55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 134 (385)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. . ..+..+++|++|++++|.+.. + ..+..+++|+.|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 136 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence 34444444444444432221 3444444444444444431 1 234444444444444444432 1 223444444444
Q ss_pred EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc
Q 043347 135 RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214 (385)
Q Consensus 135 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 214 (385)
++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence 4444444322 233444444444444444432211 33344444444444444321 223344444444444444
Q ss_pred c
Q 043347 215 F 215 (385)
Q Consensus 215 ~ 215 (385)
+
T Consensus 209 l 209 (605)
T 1m9s_A 209 C 209 (605)
T ss_dssp E
T ss_pred C
Confidence 3
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2.6e-16 Score=129.46 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=121.1
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
++++++++.++ .+|..+.. .++ .|++++|.+++..+..++..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~--~~~-~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQ--YTA-ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCT--TCS-EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCCC--CCC-EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888887 57765532 233 788888888843355666788888888888888887777788888888888888
Q ss_pred cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS 166 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 166 (385)
+|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88887666666888888888888888888777778888888888888888888777788888888888888888765
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.2e-16 Score=141.85 Aligned_cols=175 Identities=22% Similarity=0.152 Sum_probs=121.3
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCcc-CCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLW-HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF 114 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 114 (385)
.++++++.++ .+|..+. +.++.|++++|.+.+..+..+. .+++|++|++++|.+....+..+.++++|++|++++
T Consensus 22 ~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 6788888887 7776553 4578888888888766666666 788888888888888766666778888888888888
Q ss_pred ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCccc---CCCCCCceEEcccccc
Q 043347 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKL---IGLPNLEGLILGLNNF 191 (385)
Q Consensus 115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 191 (385)
|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. ++... + ..+++|+.|++++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~-~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVEL-IKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGG-TC----CTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHH-hcCcccCCcCCEEECCCCCC
Confidence 88776666667778888888888888776667777777888888887777653 22211 2 3466666666666666
Q ss_pred CCCCCcccccCCc--ccEEEccCcccc
Q 043347 192 SGSIPSFFFNASK--LYYLELAYNSFS 216 (385)
Q Consensus 192 ~~~~~~~~~~~~~--L~~L~l~~~~~~ 216 (385)
.......+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 6444444555554 355666666553
No 113
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=7.1e-16 Score=138.61 Aligned_cols=329 Identities=13% Similarity=0.103 Sum_probs=225.6
Q ss_pred cccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCc
Q 043347 25 ASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS 104 (385)
Q Consensus 25 ~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 104 (385)
.++.++.++. .+.+.++ ++ .++..+|.++++|+.+++.++ ++.....+|..|.+|+.+.+..+ +......++.++
T Consensus 65 ~AF~~c~~L~-~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVT-EIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEE-EEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHhhCCCCce-EEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 4566788888 6888754 66 788888988999999999765 55566778889999998877654 333444566666
Q ss_pred ccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceE
Q 043347 105 TKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL 184 (385)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L 184 (385)
..++...... .......+|..+.+|+.+.+..+. .......|..+.+|+.+.+..+ +. .+. ..++..+..|+.+
T Consensus 140 ~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~-~~~F~~~~~L~~i 213 (394)
T 4fs7_A 140 DFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIR-DYCFAECILLENM 213 (394)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EEC-TTTTTTCTTCCBC
T ss_pred cccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeC-chhhcccccccee
Confidence 5443333222 222445568888999999887553 3455667888899998888765 22 122 2337778888887
Q ss_pred EccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEc
Q 043347 185 ILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVL 264 (385)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 264 (385)
.+..+... ..+....+..++.+.+... +.......+..+..++.+.+..+... .. ...+..++.++.+..
T Consensus 214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~------~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 214 EFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IG------GSLFYNCSGLKKVIY 283 (394)
T ss_dssp CCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-EC------SCTTTTCTTCCEEEE
T ss_pred ecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-ee------ccccccccccceecc
Confidence 76654322 2233344567888887643 33344567788889999988766432 21 235777888888877
Q ss_pred cCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347 265 AENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG 344 (385)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 344 (385)
....+. ......+.+++.+.+..+ +......+|.+|.+|+.+++.++ +......+|.+|.+|+.+.+..+ ++.
T Consensus 284 ~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 284 GSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp CSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred Cceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 654332 222233378888888754 44345667889999999999754 54455678899999999999877 665
Q ss_pred CChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347 345 PIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL 383 (385)
Q Consensus 345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 383 (385)
....+|..|++|+++++.++ +. .+..+|.+|++|+.+
T Consensus 357 I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 77788999999999999754 32 335679999999876
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2.2e-16 Score=146.88 Aligned_cols=179 Identities=27% Similarity=0.362 Sum_probs=109.1
Q ss_pred ceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEE
Q 043347 32 SISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLY 111 (385)
Q Consensus 32 ~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 111 (385)
++. .|+++++.++ .+|..++ ++|++|++++|.+. .++ ..+++|++|++++|.+.+ +|. +.. +|++|+
T Consensus 60 ~L~-~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFS-ELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCS-EEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred Ccc-EEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 444 5666666666 4555442 55666666666665 333 335666666666666653 444 433 666666
Q ss_pred eecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcccccc
Q 043347 112 LSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF 191 (385)
Q Consensus 112 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 191 (385)
+++|.+.+ +|. .+++|+.|++++|.++. ++. .+++|+.|++++|.+.+ +|. +. ++|+.|++++|.+
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~---l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE---LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC--TTCCEEECCSSCC
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch---hh--CCCCEEECcCCCC
Confidence 66666653 443 45666666666666654 232 45667777777766654 333 22 6677777777766
Q ss_pred CCCCCcccccCCcc-------cEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347 192 SGSIPSFFFNASKL-------YYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242 (385)
Q Consensus 192 ~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 242 (385)
+. ++. +.. +| +.|++++|.++. ++..+..+++|+.|++++|.++..
T Consensus 193 ~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 193 ES-LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SS-CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred Cc-hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 63 222 332 55 888888888875 455566688899999999888764
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=6.8e-16 Score=127.81 Aligned_cols=133 Identities=26% Similarity=0.228 Sum_probs=65.4
Q ss_pred CCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEc
Q 043347 81 KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL 160 (385)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 160 (385)
++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555444444555555555555555554333333445555555555555554444444445555555555
Q ss_pred cCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccc
Q 043347 161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216 (385)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (385)
++|.+. .+|.. +..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 120 s~N~l~-~lp~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRG--IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTT--GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcc--cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555544 22222 334455555555555554443444445555555555555443
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=3.4e-16 Score=138.97 Aligned_cols=177 Identities=24% Similarity=0.194 Sum_probs=146.2
Q ss_pred cEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCcc-CcccccEEEeecccccCCCCcccCCCcCCcEEEecc
Q 043347 60 KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLG-NSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ 138 (385)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 138 (385)
+.++++++.+. .++..+. +.++.|++++|.+....+..+. .+++|++|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 67889888887 4454443 4689999999999876666777 899999999999999877777899999999999999
Q ss_pred cccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCccc---ccCCcccEEEccCccc
Q 043347 139 NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFF---FNASKLYYLELAYNSF 215 (385)
Q Consensus 139 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 215 (385)
|.+....+..+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+.......+ ..+++|+.|++++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH--hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9998777778899999999999999987654433 7789999999999999986555555 5689999999999999
Q ss_pred cccCcccccCCCC--ccEEEecCCcccc
Q 043347 216 SGLIPKALGQLRN--LERLGLQSNYLTS 241 (385)
Q Consensus 216 ~~~~~~~~~~~~~--L~~L~l~~~~~~~ 241 (385)
.......+..++. ++.|++++|.+..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccC
Confidence 8766667777776 4889999998765
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-16 Score=134.45 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=85.6
Q ss_pred cccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccc
Q 043347 199 FFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG 278 (385)
Q Consensus 199 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 278 (385)
+..+++|++|++++|.+... + .+..+++|+.|++++|.+++.+ .+..+++|+.|++++|.+.+..+. ..
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~--------~l~~l~~L~~L~L~~N~l~~l~~~-~~ 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLS--------PLKDLTKLEELSVNRNRLKNLNGI-PS 105 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--------GGTTCSSCCEEECCSSCCSCCTTC-CC
T ss_pred hhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCCh--------hhccCCCCCEEECCCCccCCcCcc-cc
Confidence 44455555555555555432 1 3455556666666665555432 145555666666666655542211 11
Q ss_pred ccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccE
Q 043347 279 NLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK 358 (385)
Q Consensus 279 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 358 (385)
++++.|++++|++.+. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++. ..+..+++|+.
T Consensus 106 ---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 106 ---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp ---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred ---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 4566666666666542 2356666777777777766632 2 456666777777777766644 44556667777
Q ss_pred EEccCCccccc
Q 043347 359 FYLNRNKLSGS 369 (385)
Q Consensus 359 L~l~~~~~~~~ 369 (385)
|++++|+++..
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 77777666543
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.2e-16 Score=136.02 Aligned_cols=229 Identities=16% Similarity=0.151 Sum_probs=107.8
Q ss_pred CChhhhcC--------CCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc---
Q 043347 48 FPDDMCEG--------LPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN--- 116 (385)
Q Consensus 48 ~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--- 116 (385)
+|..+|.. +++|+.+++++ .++.....+|..|++|+.++++.+.+....+..|.++.++.++......
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 45555555 66666666666 5555555566666666666666666554455556555555555443311
Q ss_pred -ccCCCCcccCCCcCCc-EEEecccc-cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCC
Q 043347 117 -LIGEIPQEIGSLRNLE-ILRIDQNN-LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG 193 (385)
Q Consensus 117 -~~~~~~~~~~~l~~L~-~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 193 (385)
.......+|..+..|+ .+.+.... +.......-....++..+.+.+.-..... ......+++|+.+++..+.++.
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADF--KLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHH--HHHHHHCTTCCEEECTTBCCCE
T ss_pred ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHH--HHHHHhcCCCeEEECCCCCcce
Confidence 1111222333444444 22222111 00000000001122223322221110000 0001124566666666655555
Q ss_pred CCCcccccCCcccEEEccCccccccCcccccCCCCcc-EEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCC
Q 043347 194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE-RLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV 272 (385)
Q Consensus 194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 272 (385)
.....|..|.+|+++++.+| +......+|..+++|+ .+.+.+ .++..+. .+|..|++|+.+++.++.+...
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------GAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT------TTTTTCTTEEEEEECSSCCCEE
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch------hhhhCCccCCEEEeCCCccCcc
Confidence 55555666666666666655 4444555666666666 666655 3443322 3566666666666666655544
Q ss_pred CCCcccccccceeEEE
Q 043347 273 LPSSIGNLSVSVEEIY 288 (385)
Q Consensus 273 ~~~~~~~~~~~l~~L~ 288 (385)
.+..+... ++|+.+.
T Consensus 313 ~~~aF~~~-~~L~~ly 327 (329)
T 3sb4_A 313 GDELFGNG-VPSKLIY 327 (329)
T ss_dssp CTTTTCTT-CCCCEEE
T ss_pred chhhhcCC-cchhhhc
Confidence 44444433 4555543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.4e-16 Score=133.37 Aligned_cols=163 Identities=23% Similarity=0.262 Sum_probs=83.1
Q ss_pred eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc
Q 043347 37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN 116 (385)
Q Consensus 37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 116 (385)
++++++.++ .++ .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.
T Consensus 24 l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 24 QNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSC
T ss_pred HHhcCCCcc-ccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCc
Confidence 555555554 333 12245555555555555542 22 455555555555555555422 22 5555555555555555
Q ss_pred ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCC
Q 043347 117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP 196 (385)
Q Consensus 117 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 196 (385)
+.+ ++. +.. ++|+.|++++|.++.. ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+.
T Consensus 97 l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~---~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 97 LKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V---MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G---GGGGCTTCCEEECTTSCCCBC--
T ss_pred cCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h---HHccCCCCCEEECCCCcCcch--
Confidence 542 222 112 5555555555555432 2355555566666655555432 1 244555666666666655533
Q ss_pred cccccCCcccEEEccCccccc
Q 043347 197 SFFFNASKLYYLELAYNSFSG 217 (385)
Q Consensus 197 ~~~~~~~~L~~L~l~~~~~~~ 217 (385)
..+..+++|+.|++++|.+..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 445555666666666665543
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.9e-14 Score=128.87 Aligned_cols=260 Identities=13% Similarity=0.141 Sum_probs=160.3
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.+.+.+. ++ .++..+|..+ +|+.+.+..+ ++.....+|..+ +|+.+.+.. .+......+|.++++|+.+++.++
T Consensus 117 ~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 117 EIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp EEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS
T ss_pred EEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC
Confidence 4555543 44 5666666554 6777777655 554555666664 577777765 444445566777777777777776
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 195 (385)
.+......+|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +. .++. .+|.. .+|+.+.+. +.+....
T Consensus 191 ~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~-~aF~~-~~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 191 KITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQ-EAFRE-SGITTVKLP-NGVTNIA 263 (401)
T ss_dssp CCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECT-TTTTT-CCCSEEEEE-TTCCEEC
T ss_pred cceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Cccc-ccccc-CCccEEEeC-CCccEEC
Confidence 66644444444 567777777643 55555666777777777777653 22 1222 22544 567777773 3344344
Q ss_pred CcccccCCcccEEEccCcccc-----ccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347 196 PSFFFNASKLYYLELAYNSFS-----GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (385)
...|..|++|+.+.+.++... ......|..+++|+.+.+.+ .+...+. .+|..|++|+.+.+..+ +.
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~------~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ------GLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT------TTTTTCCSCCEEEECTT-CC
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh------hhhcCCCCccEEEECcc-cc
Confidence 566777777777777665543 34456677777888887774 3444432 46777778888877544 44
Q ss_pred CCCCCcccccccceeEEEeeccccCCCCCccccCCC-CccEEECcCccc
Q 043347 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLI-NLTKLSLGYNNL 318 (385)
Q Consensus 271 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 318 (385)
......+... +|+.+.+.++.........|.+++ +++.|.+..+.+
T Consensus 336 ~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 336 QINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 3333333333 788888887777665666666664 677787776544
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.1e-14 Score=130.82 Aligned_cols=316 Identities=13% Similarity=0.080 Sum_probs=222.3
Q ss_pred ccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCC
Q 043347 43 SLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122 (385)
Q Consensus 43 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 122 (385)
.++ .+...+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ +......++.++..|+.+.+..+ +.....
T Consensus 58 ~Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVV-SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEE-EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEe-EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 455 788899999999999999754 66677889999999999999765 44455568889999998877553 333445
Q ss_pred cccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccC
Q 043347 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202 (385)
Q Consensus 123 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 202 (385)
.+|..+..++...... ........|..+++|+.+.+..+... ++. ..|..+.+|+.+.+..+ +.......+..+
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~--I~~-~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMET--LHN-GLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE--ECT-TTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccce--ecc-ccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 5666665444333222 23345567889999999999765322 222 34888999999988765 333455677888
Q ss_pred CcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccccc
Q 043347 203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSV 282 (385)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 282 (385)
..|+.+.+..+... ..........|+.+.+.... ...+ ..++..+..++.+.+..+... .....+.. +.
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~------~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~-~~ 276 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELG------KSVFYGCTDLESISIQNNKLR-IGGSLFYN-CS 276 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEEC------SSTTTTCSSCCEEEECCTTCE-ECSCTTTT-CT
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCCc-eecc------cccccccccceeEEcCCCcce-eecccccc-cc
Confidence 89998888765332 12233455788999887542 2222 146778899999998765332 22222322 36
Q ss_pred ceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEcc
Q 043347 283 SVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362 (385)
Q Consensus 283 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (385)
.++.+......+ ...++..+.+|+.+.+.++ +......+|.+|.+|+.+++.++ ++.....+|..|.+|+.+.+.
T Consensus 277 ~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 277 GLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred ccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 677776665433 2345778899999999765 44355668899999999999755 555677889999999999998
Q ss_pred CCcccccCCCcccccccCccccC
Q 043347 363 RNKLSGSIPSCLGDLNSLRILSL 385 (385)
Q Consensus 363 ~~~~~~~~~~~~~~l~~L~~l~i 385 (385)
.+ ++.+...+|.+|.+|+.+.+
T Consensus 352 ~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 352 LS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TT-CCEECTTTBTTCTTCCEEEE
T ss_pred cc-ccEehHHHhhCCCCCCEEEE
Confidence 66 77778899999999998753
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.4e-17 Score=154.17 Aligned_cols=202 Identities=18% Similarity=0.168 Sum_probs=152.1
Q ss_pred CCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc-------------ccccCcccccCCCCccEEE-ecCCcccc
Q 043347 176 IGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS-------------FSGLIPKALGQLRNLERLG-LQSNYLTS 241 (385)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 241 (385)
...+.|+.|+++.+.+. ..+..++.+++|+.|++++|. .....+..++.+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677888888888776 456777788888888876653 2333455667778888887 56554443
Q ss_pred cchhhhh--hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc
Q 043347 242 STSELMS--LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS 319 (385)
Q Consensus 242 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 319 (385)
....... .+..+. ...|+.|++++|.+.+ .|. +..+ ++|+.|++++|.+. .+|..++.+++|+.|++++|.++
T Consensus 425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 LRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-cccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 3221100 011111 2369999999999986 454 6666 79999999999998 67888999999999999999999
Q ss_pred CCCccccccCCCCCeEeccCCcccCCC-hhhhhcCCCccEEEccCCcccccCCCc---ccccccCccccC
Q 043347 320 GSLPITLGRLKKLQGLDLQNNKFEGPI-PHEFCHFSRLYKFYLNRNKLSGSIPSC---LGDLNSLRILSL 385 (385)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~l~i 385 (385)
+ +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++..+.. +..+++|+.|++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 66 7899999999999999999776 899999999999999999998765532 234788887753
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=2.5e-14 Score=128.07 Aligned_cols=265 Identities=18% Similarity=0.186 Sum_probs=198.7
Q ss_pred cCcccEEEecCccccCCCCc-ccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347 6 LAELEVLVLNNNLLTGTIPA-SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS 84 (385)
Q Consensus 6 ~~~l~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 84 (385)
+..++++.+.+. ++ .++. ++.+ .++. .+.+.++ ++ .++..+|.++ +|+.+.+.. .+......+|..|++|+
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~-~~L~-~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRN-SQIA-KVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTT-CCCS-EEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCc-cC-EehHhhccc-CCcc-EEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 466777777764 33 3333 3444 4666 7888776 66 7888888775 799999986 56667778999999999
Q ss_pred EEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCc
Q 043347 85 RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNT 164 (385)
Q Consensus 85 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 164 (385)
.+++..+.+.......|. ...|+.+.+..+ +......+|..+++|+.+.+..+ ++......|.. .+|+.+.+..+
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~- 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG- 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-
Confidence 999998888754445565 689999999754 55566778999999999999864 55556666766 78999998653
Q ss_pred ccccCCCCcccCCCCCCceEEccccccC-----CCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347 165 LSGNLPSSKKLIGLPNLEGLILGLNNFS-----GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239 (385)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 239 (385)
+... + ..+|..+++|+.+.+.++... ......|..|++|+.+.+.. .+......+|..+++|+.+.+..+ +
T Consensus 259 i~~I-~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 259 VTNI-A-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp CCEE-C-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred ccEE-C-hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 3322 2 234889999999999877553 34567889999999999984 476677788999999999999665 5
Q ss_pred cccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294 (385)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 294 (385)
..... .+|..+ +|+.+.+.++.........+...+.+++.|.+..+..
T Consensus 335 ~~I~~------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 335 TQINF------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECT------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cEEcH------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 54432 578888 9999999999877666666666656788998887654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.7e-15 Score=116.63 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=87.4
Q ss_pred ccCceEEEccCCCCC-CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCe
Q 043347 256 CKSLKVIVLAENPVD-GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQG 334 (385)
Q Consensus 256 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 334 (385)
.++++.|++++|.+. +..|..+..+ ++++.|++++|.+.+. ..++.+++|+.|++++|.+.+.++..+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 355666666666665 4445444444 6677777777766644 55677778888888888887656766667888888
Q ss_pred EeccCCcccCC-ChhhhhcCCCccEEEccCCcccccCC---CcccccccCccccC
Q 043347 335 LDLQNNKFEGP-IPHEFCHFSRLYKFYLNRNKLSGSIP---SCLGDLNSLRILSL 385 (385)
Q Consensus 335 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~l~i 385 (385)
|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 88888887742 23667778888888888888876554 45677777777764
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=7.3e-15 Score=118.08 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=78.8
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCC-CccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPN-NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF 114 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 114 (385)
.++++++.++ .+|..+. +++++|++++|.+.+..+. .|..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5666666665 5665443 2566666666666544432 356666666666666666655556666666666666666
Q ss_pred ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS 166 (385)
Q Consensus 115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 166 (385)
|.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666555555666666666666666666555666666666666666666554
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.2e-14 Score=116.80 Aligned_cols=128 Identities=22% Similarity=0.239 Sum_probs=97.2
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCCh-hhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPD-DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL 88 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 88 (385)
++++++++.++ .+|..+.. .++ +|++++|.++ .++. .++..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~-~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTT-ELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCS-EEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCC-EEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 67788888776 67765543 555 6888888887 4443 45567888888888888887777777888888888888
Q ss_pred ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccc
Q 043347 89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142 (385)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 142 (385)
++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888887666666778888888888888887777777888888888888887765
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=7.1e-15 Score=115.60 Aligned_cols=128 Identities=18% Similarity=0.097 Sum_probs=73.8
Q ss_pred eeEeecCccc-cCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347 36 GLDFSNNSLT-GSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF 114 (385)
Q Consensus 36 ~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 114 (385)
.|++++|.++ +.+|.. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 28 ~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 28 ELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp EEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred EEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 5666666555 344443 23556666666666665533 4556666666666666666544444455566666666666
Q ss_pred ccccCCC-CcccCCCcCCcEEEecccccccccC---ccccCCCCCcEEEccCCccc
Q 043347 115 NNLIGEI-PQEIGSLRNLEILRIDQNNLVGFIP---DTIFNMSTLKTLSLLNNTLS 166 (385)
Q Consensus 115 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~l~l~~~~~~ 166 (385)
|.+.+.. +..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 105 N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6655321 1456666666666666666654333 34556666666666666544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=8.8e-15 Score=115.04 Aligned_cols=134 Identities=19% Similarity=0.136 Sum_probs=111.0
Q ss_pred CCCCccEEEecCCccc--ccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccc
Q 043347 225 QLRNLERLGLQSNYLT--SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302 (385)
Q Consensus 225 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 302 (385)
.+++|+.|++++|.+. .. ...+..+++|+.|++++|.+.+. ..+..+ +++++|++++|++.+..+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i-------~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKI-------EGLTAEFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBC-------SSCCGGGGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhH-------HHHHHhCCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHHHH
Confidence 4588999999999887 33 23467889999999999998865 555555 799999999999987777777
Q ss_pred cCCCCccEEECcCccccCCC-ccccccCCCCCeEeccCCcccCCCh---hhhhcCCCccEEEccCCcccc
Q 043347 303 GNLINLTKLSLGYNNLSGSL-PITLGRLKKLQGLDLQNNKFEGPIP---HEFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 303 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~ 368 (385)
..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 77999999999999998532 2678889999999999999986555 478889999999999998863
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=2.8e-17 Score=153.64 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=45.7
Q ss_pred ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347 107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186 (385)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l 186 (385)
|++|++++|.+.+ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp---~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD---GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG---GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc---ccCCCCCCcEEEC
Confidence 5555555555542 333 555555555555555554 334445555555555555554442 22 1333444444444
Q ss_pred cccccCCCC-CcccccCCcccEEEccCccc
Q 043347 187 GLNNFSGSI-PSFFFNASKLYYLELAYNSF 215 (385)
Q Consensus 187 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 215 (385)
++|.+++.. +..+..+++|+.|++++|.+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 444433322 33333344444444444433
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.8e-14 Score=112.76 Aligned_cols=126 Identities=27% Similarity=0.383 Sum_probs=82.1
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+. ++|++|++++|.+. .++..|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5666666666 6665442 46667777776665 44456666677777777777666555556666777777777777
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS 166 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 166 (385)
.+....+..|..+++|+.|++++|.++...+..+..+++|+.+++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666555556666777777777777766555555666777777777766553
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.2e-14 Score=113.59 Aligned_cols=127 Identities=23% Similarity=0.259 Sum_probs=93.6
Q ss_pred cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
+.++++++.++ .+|..+. +.++ +|++++|.++ .+|. .+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~-~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVT-ELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCC-EEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCC-EEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 56777777776 6666543 3455 6888888887 7774 44578888888888888876666777888888888888
Q ss_pred cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccc
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 142 (385)
+|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88877666667778888888888888877555556777888888888877654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.4e-13 Score=109.16 Aligned_cols=126 Identities=23% Similarity=0.247 Sum_probs=73.1
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.+++++++++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 11 ~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4666666666 555443 245666666666666554555566666666666666665443344566666666666666
Q ss_pred cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL 165 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 165 (385)
.+.+..+..+..+++|+.|++++|.++...+..+..+++|+++++++|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 66544444455666666666666665544333445555566666555544
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=3.1e-14 Score=109.51 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=72.1
Q ss_pred hcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCC
Q 043347 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKL 332 (385)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 332 (385)
..+++|+.|++++|.+.+. ..+..+ +++++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+..+++|
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKL-NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCC-TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcC-CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 3344444444444444433 223333 5666666666666655666666788899999999888753 33677888999
Q ss_pred CeEeccCCcccCCCh---hhhhcCCCccEEEccC
Q 043347 333 QGLDLQNNKFEGPIP---HEFCHFSRLYKFYLNR 363 (385)
Q Consensus 333 ~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 363 (385)
+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999998886555 4677889999988764
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.6e-13 Score=108.78 Aligned_cols=131 Identities=24% Similarity=0.220 Sum_probs=112.3
Q ss_pred cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347 8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS 87 (385)
Q Consensus 8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 87 (385)
+.+.++++++.++ .+|..+. ++++ .|+++++.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~--~~l~-~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP--SSAT-RLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC--TTCS-EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEecCCCCc-cCCCCCC--CCCc-EEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 4578999999987 6776543 5666 8999999999 78888777899999999999999877777789999999999
Q ss_pred cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc
Q 043347 88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG 143 (385)
Q Consensus 88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 143 (385)
+++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999986666678899999999999999986655567889999999999998764
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=9.1e-12 Score=111.80 Aligned_cols=315 Identities=11% Similarity=0.114 Sum_probs=166.7
Q ss_pred CCChhhhcCCC-cccEEEccCCcccCcCCCCccCCCCCcEEeccccc---ccccCCCCccCcccccEEEeecccccCCCC
Q 043347 47 SFPDDMCEGLP-RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQ---FTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122 (385)
Q Consensus 47 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 122 (385)
.+++.+|..+. .|+.+.+..+ ++.....+|.+|.+|+.+.+..+. +......+|.++..|+.+.+..+ +.....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 45566665553 4677777654 444556667777777777665542 33334455666666666655433 332344
Q ss_pred cccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccC
Q 043347 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202 (385)
Q Consensus 123 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 202 (385)
.+|..+.+|+.+.+... +.......+..+..|+.+.+..+- ... .. .+|. ...|+.+.+...-.. .....+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~-~~I-~~-~aF~-~~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV-TAI-EE-RAFT-GTALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEE-CT-TTTT-TCCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhcccccccccce-eeeecccceeccccccccccccee-eEe-cc-cccc-ccceeEEEECCcccc-cccchhhhc
Confidence 45666667777666533 233444556666666666665432 111 11 1132 245666655433211 223344555
Q ss_pred CcccEEEccCccccccCc-------------ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347 203 SKLYYLELAYNSFSGLIP-------------KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269 (385)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (385)
..+............... ..+.....+..+.+... +.... ..+|..++.|+.+.+..+..
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~------~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIE------THAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEEC------TTTTTTCSSCCEEECCTTCC
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcc------cceeeecccccEEecccccc
Confidence 555555443322111000 00111222333333221 11111 13566777777777754322
Q ss_pred CCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhh
Q 043347 270 DGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHE 349 (385)
Q Consensus 270 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 349 (385)
......+.. +..|+.+.+.. .+......+|.+|.+|+.+.|.++ ++.....+|.+|.+|+.+.+..+ ++.....+
T Consensus 278 -~I~~~aF~~-c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 278 -SIGTGAFMN-CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp -EECTTTTTT-CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred -eecCccccc-ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 112222222 25677776653 333344567888888999888764 44345667888889999888655 55567778
Q ss_pred hhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347 350 FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS 384 (385)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 384 (385)
|.+|++|+.+++.++... ..++..+.+|+.+.
T Consensus 353 F~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLP 384 (394)
T ss_dssp GTTCTTCCEEEESSCHHH---HHTCBCCCCC----
T ss_pred hhCCCCCCEEEECCceee---hhhhhccCCCCEEE
Confidence 888899999998887543 23455666666654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=8.4e-14 Score=110.26 Aligned_cols=134 Identities=18% Similarity=0.143 Sum_probs=104.7
Q ss_pred cccCCCCccEEEecCCcccccchhhhhhhHhhhcc-cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc
Q 043347 222 ALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC-KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300 (385)
Q Consensus 222 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 300 (385)
.+..+++|+.|++++|.+...+ .+..+ ++|+.|++++|.+.+. ..+..+ +++++|++++|.+.+..+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~--------~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIE--------NLGATLDQFDAIDFSDNEIRKL--DGFPLL-RRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCC--------CGGGGTTCCSEEECCSSCCCEE--CCCCCC-SSCCEEECCSSCCCEECSC
T ss_pred hcCCcCCceEEEeeCCCCchhH--------HhhhcCCCCCEEECCCCCCCcc--cccccC-CCCCEEECCCCcccccCcc
Confidence 3567889999999999888642 23333 4899999999988865 445555 7899999999998865555
Q ss_pred cccCCCCccEEECcCccccCCCcc--ccccCCCCCeEeccCCcccCCChh----hhhcCCCccEEEccCCcccc
Q 043347 301 EIGNLINLTKLSLGYNNLSGSLPI--TLGRLKKLQGLDLQNNKFEGPIPH----EFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 301 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 368 (385)
.+..+++|++|++++|.+. .++. .+..+++|+.|++++|.++. .+. .+..+++|+.|++++|....
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 5688899999999999986 4554 67888999999999998884 444 37789999999999887653
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=9.4e-15 Score=140.87 Aligned_cols=115 Identities=28% Similarity=0.345 Sum_probs=67.8
Q ss_pred ChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCC
Q 043347 49 PDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSL 128 (385)
Q Consensus 49 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 128 (385)
+.+.+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444445666666666666655 44444456666666666666665 55666666666666666666665 556666666
Q ss_pred cCCcEEEecccccccccCccccCCCCCcEEEccCCcccc
Q 043347 129 RNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG 167 (385)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 167 (385)
++|++|++++|.+. .+|..|..+++|+.|++++|.+.+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 66666666666665 345556666666666666666543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.4e-13 Score=108.89 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=96.7
Q ss_pred ccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc
Q 043347 198 FFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI 277 (385)
Q Consensus 198 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 277 (385)
.+..+.++++|++++|.+... +......++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--------cccccCCCCCEEECCCCcccccCcchh
Confidence 345677888888888887744 33223334888888888887753 356778888888888888876544433
Q ss_pred cccccceeEEEeeccccCCCCCc--cccCCCCccEEECcCccccCCCcc----ccccCCCCCeEeccCCccc
Q 043347 278 GNLSVSVEEIYMYKCNIHGRIPK--EIGNLINLTKLSLGYNNLSGSLPI----TLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 278 ~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 343 (385)
..+ +++++|++++|++.. ++. .+..+++|+.|++++|.+. ..+. .+..+++|+.|++++|...
T Consensus 85 ~~l-~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QAL-PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHC-TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcC-CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555 788888888888853 443 6777888888888888887 4444 3777888888888888665
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=3.1e-14 Score=137.24 Aligned_cols=152 Identities=24% Similarity=0.293 Sum_probs=77.5
Q ss_pred CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275 (385)
Q Consensus 196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 275 (385)
+..+..++.|+.|++++|.+.. .+..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+. .+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~l-------p~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTEL-------PAEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSCC-------CGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCccc-------ChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 4455556666666666666653 233334566666666666666533 234555666666666666666 4455
Q ss_pred cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCC-CCeEeccCCcccCCChhhhhcCC
Q 043347 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKK-LQGLDLQNNKFEGPIPHEFCHFS 354 (385)
Q Consensus 276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~ 354 (385)
.+..+ ++|++|++++|.+. .+|..++.+++|+.|+|++|.+.+..+..+..+.. ...+++++|.+++..|.
T Consensus 288 ~~~~l-~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------ 359 (727)
T 4b8c_D 288 ELGSC-FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ 359 (727)
T ss_dssp SGGGG-TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------
T ss_pred hhcCC-CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------
Confidence 55554 56666666666654 34545666666666666666666555554433221 12345566666554443
Q ss_pred CccEEEccCC
Q 043347 355 RLYKFYLNRN 364 (385)
Q Consensus 355 ~L~~L~l~~~ 364 (385)
.|+.|+++.|
T Consensus 360 ~l~~l~l~~n 369 (727)
T 4b8c_D 360 ERRFIEINTD 369 (727)
T ss_dssp C---------
T ss_pred ccceeEeecc
Confidence 3344555555
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=3.9e-11 Score=107.67 Aligned_cols=316 Identities=9% Similarity=0.121 Sum_probs=191.0
Q ss_pred ccccccc-eeceeEeecCccccCCChhhhcCCCcccEEEccCCc---ccCcCCCCccCCCCCcEEecccccccccCCCCc
Q 043347 26 SIFNLSS-ISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ---FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL 101 (385)
Q Consensus 26 ~~~~~~~-l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 101 (385)
++.++.. ++ .+.+.+. ++ .+...+|.++.+|+.+.+..+. ++.....+|..|.+|+.+.+..+ +.......+
T Consensus 58 aF~~~~~~L~-sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLT-SVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCC-EEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hccCCCCcCE-EEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 3445544 44 6787754 55 6778888888888888887653 55456677888888888777654 333445577
Q ss_pred cCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347 102 GNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181 (385)
Q Consensus 102 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L 181 (385)
..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|. ...|+.+.+...... . ...++..+..+
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i--~~~af~~c~~l 207 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-I--GTNAFSECFAL 207 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-E--CTTTTTTCTTC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-c--ccchhhhcccc
Confidence 78888888888653 33345556778888888887654 3333344443 356888877654322 1 12235666777
Q ss_pred ceEEccccccCCCCCccc-------------ccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhh
Q 043347 182 EGLILGLNNFSGSIPSFF-------------FNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS 248 (385)
Q Consensus 182 ~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 248 (385)
.................+ .....+..+.+.. .+......+|..+..|+.+.+..+... .+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~----- 280 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IG----- 280 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-EC-----
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ec-----
Confidence 766655443221111111 1122333444432 233344567788888888888765322 22
Q ss_pred hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc
Q 043347 249 LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR 328 (385)
Q Consensus 249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 328 (385)
..+|..++.|+.+.+.. .+.......+ ..+.+|+++.+..+ +......+|.+|.+|+.+.|..+ ++.....+|.+
T Consensus 281 -~~aF~~c~~L~~i~l~~-~i~~I~~~aF-~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 281 -TGAFMNCPALQDIEFSS-RITELPESVF-AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp -TTTTTTCTTCCEEECCT-TCCEECTTTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred -CcccccccccccccCCC-cccccCceee-cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 24677888888888863 3432323333 33378888888754 44345667899999999999755 55455678999
Q ss_pred CCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcc
Q 043347 329 LKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366 (385)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 366 (385)
|++|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 356 C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999999999987543 23455678898888876544
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.7e-15 Score=121.35 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=96.4
Q ss_pred cCCcccEEEccCccccccCcc------cccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCC
Q 043347 201 NASKLYYLELAYNSFSGLIPK------ALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLP 274 (385)
Q Consensus 201 ~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 274 (385)
....++.+++..+.+....+. .+..+++|+.|++++|.+...+ .+..+++|+.|++++|.+. ..|
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-ccc
Confidence 344555555555555433333 6677778888888887776532 4566777888888877776 334
Q ss_pred CcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCc-cccccCCCCCeEeccCCcccCCChh-----
Q 043347 275 SSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP-ITLGRLKKLQGLDLQNNKFEGPIPH----- 348 (385)
Q Consensus 275 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----- 348 (385)
..+... ++++.|++++|++.+ .+ .+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+.+..+.
T Consensus 87 ~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 87 NLDAVA-DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp SHHHHH-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred chhhcC-CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence 433333 677777777777764 33 46667777777777777763222 3566777777777777777543332
Q ss_pred -----hhhcCCCccEEEccCCccc
Q 043347 349 -----EFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 349 -----~~~~~~~L~~L~l~~~~~~ 367 (385)
.+..+++|+.|+ +++++
T Consensus 164 ~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHHhCCCcEEEC--CcccC
Confidence 255677777765 55554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=6.1e-12 Score=98.69 Aligned_cols=103 Identities=25% Similarity=0.227 Sum_probs=69.3
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 13 ~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5777777777 666554 256777777777777666666777777777777777776444445667777777777777
Q ss_pred cccCCCCcccCCCcCCcEEEecccccc
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLV 142 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 142 (385)
.+....+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 766544445666777777777766654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=8.3e-12 Score=97.94 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=40.5
Q ss_pred cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347 257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336 (385)
Q Consensus 257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 336 (385)
++++.|++++|.+.+..+..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 345555555555554444444433 4455555555544443444444444555555555544433333344444555555
Q ss_pred ccCCccc
Q 043347 337 LQNNKFE 343 (385)
Q Consensus 337 l~~~~~~ 343 (385)
+++|.+.
T Consensus 109 L~~N~~~ 115 (170)
T 3g39_A 109 LLNNPWD 115 (170)
T ss_dssp CCSSCBC
T ss_pred eCCCCCC
Confidence 5554444
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=6.3e-15 Score=119.19 Aligned_cols=154 Identities=24% Similarity=0.305 Sum_probs=101.8
Q ss_pred cceeceeEeecCccccCCCh-----hhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcc
Q 043347 31 SSISTGLDFSNNSLTGSFPD-----DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNST 105 (385)
Q Consensus 31 ~~l~~~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 105 (385)
..+. .++++.+.+.+.+|. ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .+|..+..++
T Consensus 18 ~~l~-~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVV-ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCC-CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccc-CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444 455555555544443 133467888888888887774 34 7777888888888888777 5666666678
Q ss_pred cccEEEeecccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCC--------cccC
Q 043347 106 KLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSS--------KKLI 176 (385)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~--------~~~~ 176 (385)
+|++|++++|.+.+ ++ .+..+++|+.|++++|.+..... ..+..+++|+.+++++|.+....|.. ..+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 88888888887764 33 57777888888888887764322 45677888888888888775443221 1245
Q ss_pred CCCCCceEEccccccC
Q 043347 177 GLPNLEGLILGLNNFS 192 (385)
Q Consensus 177 ~~~~L~~L~l~~~~~~ 192 (385)
.+++|+.|+ ++.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 677888776 44443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.1e-11 Score=97.66 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=74.7
Q ss_pred eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347 36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115 (385)
Q Consensus 36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 115 (385)
.+++++++++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 16 ~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 6788888877 7777553 67788888888877666777777888888888888777444445677778888888777
Q ss_pred cccCCCCcccCCCcCCcEEEecccccc
Q 043347 116 NLIGEIPQEIGSLRNLEILRIDQNNLV 142 (385)
Q Consensus 116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 142 (385)
.+....+..+..+++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777444445777777777777777665
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=7.7e-14 Score=123.65 Aligned_cols=66 Identities=26% Similarity=0.211 Sum_probs=30.0
Q ss_pred cCCCCccEEECcCccccCC----CccccccCCCCCeEeccCCcccCCChh----hhhcCCCccEEEccCCcccc
Q 043347 303 GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNNKFEGPIPH----EFCHFSRLYKFYLNRNKLSG 368 (385)
Q Consensus 303 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 368 (385)
..+++|++|++++|.+.+. +...+..+++|+.|++++|.+++.... .+...++|++|++++|+++.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3344555555555554421 123334444555555555555432221 22234555555555555543
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=7.7e-10 Score=98.74 Aligned_cols=286 Identities=12% Similarity=0.055 Sum_probs=125.5
Q ss_pred cceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEE
Q 043347 31 SSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLL 110 (385)
Q Consensus 31 ~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 110 (385)
.+++ .+.+.. .++ .+++.+|.+|.+|+.+.+..+ ++.....+|..+ +|+.+.+..+ +......++.. .+|+.+
T Consensus 46 ~~i~-~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 46 DRIS-EVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GGCS-EEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred cCCE-EEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence 3444 466653 355 667777777777777777644 454556666666 4666655443 22223334444 367777
Q ss_pred EeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCC----------CcccCCCCC
Q 043347 111 YLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPS----------SKKLIGLPN 180 (385)
Q Consensus 111 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~----------~~~~~~~~~ 180 (385)
.+..+ +......+|..+ .++.+.+..+ ++......+..+..++.+.+........... ...+.....
T Consensus 119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred cCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence 76543 221223334433 4555544332 2333344555666666665543221100000 001122223
Q ss_pred CceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCce
Q 043347 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLK 260 (385)
Q Consensus 181 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 260 (385)
+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++..+. .++..+..|+
T Consensus 196 ~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~------~aF~~~~~l~ 266 (379)
T 4h09_A 196 GTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS------FLLQNCTALK 266 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT------TTTTTCTTCC
T ss_pred ccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc------cccceeehhc
Confidence 333332221111 12223344455555555432 22233344555556666655443 222211 2445555555
Q ss_pred EEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEecc
Q 043347 261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQ 338 (385)
Q Consensus 261 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 338 (385)
.+.+..+ +.......+. .+.+|+.+.+.++.+......+|.+|.+|+.+.|..+ +......+|.+|.+|+.+.+.
T Consensus 267 ~i~l~~~-i~~i~~~aF~-~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCS-GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCC-CSEECTTTTT-TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccc-ceeccccccc-cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 5555432 2211111111 1244555555444443333444445555555555432 222223344445555555443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=2.6e-11 Score=95.46 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=91.2
Q ss_pred ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347 9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL 88 (385)
Q Consensus 9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 88 (385)
-+.++++++.+. .+|..+. .+++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~-~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQ-RLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCS-EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCc-EEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 378999999997 7888764 6666 8999999999 777777779999999999999999777777899999999999
Q ss_pred ccccccccCCCCccCcccccEEEeeccccc
Q 043347 89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLI 118 (385)
Q Consensus 89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 118 (385)
++|.+....+..+..+++|++|++++|++.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999998555556999999999999999886
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=3.3e-13 Score=119.58 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=58.1
Q ss_pred CcccEEEccCCcccCcCCCCc-cCCCCCcEEecccccccccCCCCc-----cCcccccEEEeecccccCC----CCcccC
Q 043347 57 PRLKGLYVSYNQFKGPIPNNL-WHCKELSRVSLSFNQFTGRIPRDL-----GNSTKLKLLYLSFNNLIGE----IPQEIG 126 (385)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~----~~~~~~ 126 (385)
++|++|++++|.+.......+ ..+++|+.|++++|.+.......+ ...+.|++|++++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554432211111 123345555555554432222121 1234555555555544321 222234
Q ss_pred CCcCCcEEEeccccccccc----CccccCCCCCcEEEccCCcccccCCC--CcccCCCCCCceEEccccccC
Q 043347 127 SLRNLEILRIDQNNLVGFI----PDTIFNMSTLKTLSLLNNTLSGNLPS--SKKLIGLPNLEGLILGLNNFS 192 (385)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~ 192 (385)
.+++|++|++++|.+.+.. ...+...++|++|++++|.+.+.-.. ...+...+.|++|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4555555555555544321 22334445555666655554321000 011223455666666666554
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=1.4e-08 Score=90.61 Aligned_cols=304 Identities=12% Similarity=0.065 Sum_probs=185.0
Q ss_pred CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347 3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82 (385)
Q Consensus 3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 82 (385)
+....+|+++.+... ++..-..++.+|.+++ .+++.++ ++ .++..+|..+ .|+.+.+..+ +......+|..+ +
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~-~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMT-KVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCC-EEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCC-EEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 345567888888754 3322334577788888 6888754 66 7888888776 6788877654 444555566655 7
Q ss_pred CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccc------------cCcccc
Q 043347 83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF------------IPDTIF 150 (385)
Q Consensus 83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~~ 150 (385)
|+.+++..+... .....+.+. .++.+.+..+ +.......+..+.+++...+........ ....+.
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 888888765322 333445444 5666655443 3334455567777888777654332111 111223
Q ss_pred CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCcc
Q 043347 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE 230 (385)
Q Consensus 151 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 230 (385)
....+..+.+...... . ....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+
T Consensus 192 ~~~~~~~~~~~~~~~~-i--~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKT-V--TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp TTCCCSEEECCTTCCE-E--CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccceeE-E--eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 3445555554432211 1 1122556677777777544 22234456677888888888754 4445566777888888
Q ss_pred EEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccE
Q 043347 231 RLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTK 310 (385)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~ 310 (385)
.+.+..+ +...+ ..+|..|++|+.+.+.++.+.......+... .+|+.+.+..+ +......+|.+|.+|+.
T Consensus 267 ~i~l~~~-i~~i~------~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 267 TLNFYAK-VKTVP------YLLCSGCSNLTKVVMDNSAIETLEPRVFMDC-VKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp EEEECCC-CSEEC------TTTTTTCTTCCEEEECCTTCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ccccccc-ceecc------ccccccccccccccccccccceehhhhhcCC-CCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 8888654 33332 2467888888888888776664444444443 78888888653 44345667889999999
Q ss_pred EECcCccccCCCccccccCCC
Q 043347 311 LSLGYNNLSGSLPITLGRLKK 331 (385)
Q Consensus 311 L~l~~~~~~~~~~~~~~~~~~ 331 (385)
+.+..+ ++..-..+|.+|+.
T Consensus 338 i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 338 ISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCCCTT-CCEECTTTTTTSSC
T ss_pred EEECCc-cCEEchhHhhCCCC
Confidence 988654 33334556666643
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=1.3e-09 Score=96.03 Aligned_cols=101 Identities=23% Similarity=0.269 Sum_probs=44.2
Q ss_pred EEecCc-cccCCCCcccccccceeceeEeec-CccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347 12 LVLNNN-LLTGTIPASIFNLSSISTGLDFSN-NSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS 89 (385)
Q Consensus 12 L~l~~~-~~~~~~~~~~~~~~~l~~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 89 (385)
++.+++ .+. .+|. +..+.+++ .|+|++ |.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~-~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLT-ELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCS-EEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCC-ccCC-CCCCCCee-EEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 344444 443 3444 44444444 345543 4444 4444444444445555554444444444444444444444444
Q ss_pred cccccccCCCCccCcccccEEEeecccc
Q 043347 90 FNQFTGRIPRDLGNSTKLKLLYLSFNNL 117 (385)
Q Consensus 90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 117 (385)
+|.+....+..+..++ |++|++.+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 4444422222222222 44444444443
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=1.9e-09 Score=94.98 Aligned_cols=103 Identities=23% Similarity=0.277 Sum_probs=89.8
Q ss_pred eeEeecC-ccccCCChhhhcCCCcccEEEccC-CcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEee
Q 043347 36 GLDFSNN-SLTGSFPDDMCEGLPRLKGLYVSY-NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLS 113 (385)
Q Consensus 36 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 113 (385)
.++++++ .++ .+|. +..+++|++|++++ |.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 5788988 898 8998 55899999999996 99987777889999999999999999998888889999999999999
Q ss_pred cccccCCCCcccCCCcCCcEEEecccccc
Q 043347 114 FNNLIGEIPQEIGSLRNLEILRIDQNNLV 142 (385)
Q Consensus 114 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 142 (385)
+|.+....+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999855555565555 999999999876
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=1.3e-09 Score=95.75 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=92.6
Q ss_pred cccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhh--cccCceEEEccCC--CCCCC
Q 043347 197 SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALV--NCKSLKVIVLAEN--PVDGV 272 (385)
Q Consensus 197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~ 272 (385)
..+..+|+|+.|.++++.-... +. + ..++|+.|++..+.+... ....+. .+|+|+.|+++.+ ...+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~------~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDS------VVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHH------HHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChH------HHHHHHHccCCCCcEEEEeccccccccc
Confidence 3445667777777776531111 11 2 267888888877765432 122333 6788888877531 11111
Q ss_pred -CC----Cccc-ccccceeEEEeeccccCCCCCccc---cCCCCccEEECcCccccCC----CccccccCCCCCeEeccC
Q 043347 273 -LP----SSIG-NLSVSVEEIYMYKCNIHGRIPKEI---GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQN 339 (385)
Q Consensus 273 -~~----~~~~-~~~~~l~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~ 339 (385)
.. ..+. ..+++|+.|.+.+|.+....+..+ ..+|+|++|+++.|.+.+. ++..+..+++|+.|++++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 00 1111 123678888888877654222222 2477888888888887753 333445678888888888
Q ss_pred CcccCCChhhhhc-CCCccEEEccCCc
Q 043347 340 NKFEGPIPHEFCH-FSRLYKFYLNRNK 365 (385)
Q Consensus 340 ~~~~~~~~~~~~~-~~~L~~L~l~~~~ 365 (385)
|.+++.....+.. + ..++++++++
T Consensus 317 n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 317 NYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8877555555543 2 3567887766
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=4.1e-09 Score=92.55 Aligned_cols=183 Identities=14% Similarity=0.091 Sum_probs=112.3
Q ss_pred CCCceEEccccccCC-CC-------CcccccCCcccEEEccCcccc---------ccCcccccCCCCccEEEecCCcccc
Q 043347 179 PNLEGLILGLNNFSG-SI-------PSFFFNASKLYYLELAYNSFS---------GLIPKALGQLRNLERLGLQSNYLTS 241 (385)
Q Consensus 179 ~~L~~L~l~~~~~~~-~~-------~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~ 241 (385)
..++.|.++.....+ .. ......+++|+.|.+...... ......+..+|+|+.|.++++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 346677777554331 11 122445688999988654221 1123445677899999998873111
Q ss_pred cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccc-ccccceeEEEeecc--ccCCC-----CCccc--cCCCCccEE
Q 043347 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG-NLSVSVEEIYMYKC--NIHGR-----IPKEI--GNLINLTKL 311 (385)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L 311 (385)
. ..+ .+++|+.|++..+.+.......+. ...++|+.|.+..+ ...+. +...+ ..+|+|++|
T Consensus 187 l--------~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 187 I--------GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257 (362)
T ss_dssp C--------CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred e--------ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence 1 112 378899999988876544333332 12378999988632 11111 11122 247899999
Q ss_pred ECcCccccCCCccccc---cCCCCCeEeccCCcccCCChhhh----hcCCCccEEEccCCcccccC
Q 043347 312 SLGYNNLSGSLPITLG---RLKKLQGLDLQNNKFEGPIPHEF----CHFSRLYKFYLNRNKLSGSI 370 (385)
Q Consensus 312 ~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~ 370 (385)
++.+|.+.+.....+. .+++|+.|+++.|.+.+..+..+ ..+++|+.|++++|.++...
T Consensus 258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 9999887643333332 47889999999998886544333 45789999999999887543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=5.3e-09 Score=83.00 Aligned_cols=123 Identities=18% Similarity=0.162 Sum_probs=67.4
Q ss_pred cccCCCCccEEEecCC-cccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc
Q 043347 222 ALGQLRNLERLGLQSN-YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300 (385)
Q Consensus 222 ~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~ 300 (385)
.+...+.|+.|++++| .+.... ...+...+...+.|++|++++|.+.+..... +..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~---------------------l~~ 87 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSNDPVAFA---------------------LAE 87 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCCHHHHHH---------------------HHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCChHHHHH---------------------HHH
Confidence 3445566666666666 554322 2223344555566666666666554322111 112
Q ss_pred cccCCCCccEEECcCccccCC----CccccccCCCCCeEec--cCCcccCCCh----hhhhcCCCccEEEccCCccc
Q 043347 301 EIGNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDL--QNNKFEGPIP----HEFCHFSRLYKFYLNRNKLS 367 (385)
Q Consensus 301 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 367 (385)
.+...++|++|++++|.+.+. +...+...++|+.|++ ++|.+.+... ..+...++|++|++++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233345666677766666532 3444555667777777 6677664332 33444577777887777765
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.59 E-value=1.2e-08 Score=78.88 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=67.3
Q ss_pred cceeEEEeeccccCCCCCccccCCCCccEEECcCcc-ccCCCcccccc----CCCCCeEeccCC-cccCCChhhhhcCCC
Q 043347 282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNN-LSGSLPITLGR----LKKLQGLDLQNN-KFEGPIPHEFCHFSR 355 (385)
Q Consensus 282 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 355 (385)
..+++|++++|.++......+..+++|++|++++|. +++.....+.. +++|++|++++| .+++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888776666667789999999999985 66444444544 357999999998 588777777888999
Q ss_pred ccEEEccCCc-ccc
Q 043347 356 LYKFYLNRNK-LSG 368 (385)
Q Consensus 356 L~~L~l~~~~-~~~ 368 (385)
|+.|++++|+ +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999995 554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=3.5e-08 Score=78.19 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=84.2
Q ss_pred cccccCCcccEEEccCc-ccccc----CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347 197 SFFFNASKLYYLELAYN-SFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG 271 (385)
Q Consensus 197 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (385)
..+...++|++|++++| .+.+. ....+...++|+.|++++|.+.+.+. ..+...+...+.|++|++++|.+.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~--~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA--FALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH--HHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH--HHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34566788888888888 77543 23445667889999999998775432 2344667777888888888887764
Q ss_pred CCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEEC--cCccccCC----CccccccCCCCCeEeccCCccc
Q 043347 272 VLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSL--GYNNLSGS----LPITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 272 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 343 (385)
..... +..++...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 108 ~g~~~---------------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILA---------------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH---------------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH---------------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 32221 2233455667888888 77777643 3345556788888888888775
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=2.8e-08 Score=76.74 Aligned_cols=80 Identities=9% Similarity=0.058 Sum_probs=67.0
Q ss_pred CCccEEECcCccccCCCccccccCCCCCeEeccCC-cccCCChhhhhcC----CCccEEEccCCc-ccccCCCccccccc
Q 043347 306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN-KFEGPIPHEFCHF----SRLYKFYLNRNK-LSGSIPSCLGDLNS 379 (385)
Q Consensus 306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~l~~ 379 (385)
..|++|++++|.+++.-...+..|++|+.|+|++| .+++.....+..+ ++|++|++++|. +|+.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47999999999998776777789999999999999 5887666667664 589999999994 88877777788899
Q ss_pred CccccC
Q 043347 380 LRILSL 385 (385)
Q Consensus 380 L~~l~i 385 (385)
|+.|+|
T Consensus 141 L~~L~L 146 (176)
T 3e4g_A 141 LKYLFL 146 (176)
T ss_dssp CCEEEE
T ss_pred CCEEEC
Confidence 988864
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=6.6e-07 Score=74.53 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=46.2
Q ss_pred CCCCccEEECcCccccC--CCccccccCCCCCeEeccCCcccCCChhhhhcCC--CccEEEccCCcccccCCC-------
Q 043347 304 NLINLTKLSLGYNNLSG--SLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS--RLYKFYLNRNKLSGSIPS------- 372 (385)
Q Consensus 304 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~------- 372 (385)
.+++|+.|++++|.+.+ .++..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|++++..|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45667777777777664 2334455677777777777776643 2233333 677777777777654432
Q ss_pred cccccccCcccc
Q 043347 373 CLGDLNSLRILS 384 (385)
Q Consensus 373 ~~~~l~~L~~l~ 384 (385)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 234555555553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=7.6e-06 Score=68.14 Aligned_cols=82 Identities=23% Similarity=0.241 Sum_probs=49.9
Q ss_pred hcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCC--C
Q 043347 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK--K 331 (385)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~ 331 (385)
..+++|+.|++++|.+.+.. .++..+..+++|+.|+|++|.+.+. ..+..++ +
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~-----------------------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~ 221 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD-----------------------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLK 221 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG-----------------------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSC
T ss_pred hhCCCCCEEECCCCCCCCCc-----------------------cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCC
Confidence 34666666776666665421 1233445677777777777777643 2233333 7
Q ss_pred CCeEeccCCcccCCCh-------hhhhcCCCccEEE
Q 043347 332 LQGLDLQNNKFEGPIP-------HEFCHFSRLYKFY 360 (385)
Q Consensus 332 L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~ 360 (385)
|+.|++++|.+.+..+ ..+..+|+|+.||
T Consensus 222 L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 222 LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8888888887765333 2355678887765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=3.5e-05 Score=60.65 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=57.8
Q ss_pred cCCCCccEEEecCC-cccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccc
Q 043347 224 GQLRNLERLGLQSN-YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302 (385)
Q Consensus 224 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 302 (385)
..-+.|+.|+++++ .+.+. +...+..++...+.|+.|++++|.+.+..... +..++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~--ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a---------------------lA~aL 94 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE--RIRSLIEAACNSKHIEKFSLANTAISDSEARG---------------------LIELI 94 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH--HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT---------------------HHHHH
T ss_pred hcCCCccEEECCCCCCCCHH--HHHHHHHHHhhCCCcCEEEccCCCCChHHHHH---------------------HHHHH
Confidence 34456666666653 44322 22234455555666666666666555332221 12223
Q ss_pred cCCCCccEEECcCccccCC----CccccccCCCCCeEeccCC---cccCC----ChhhhhcCCCccEEEccCCcc
Q 043347 303 GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNN---KFEGP----IPHEFCHFSRLYKFYLNRNKL 366 (385)
Q Consensus 303 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~---~~~~~----~~~~~~~~~~L~~L~l~~~~~ 366 (385)
..-++|++|+|++|.+.+. +.+.+...+.|+.|+++++ ++.+. +.+.+..-+.|.+|+++.+.+
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3344566666666655532 2233344455666666543 22211 222344456666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.25 E-value=0.00017 Score=56.69 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=50.0
Q ss_pred CCCCCceEEccccccCC----CCCcccccCCcccEEEccCccccccC----cccccCCCCccEEEecCCcccccch-hhh
Q 043347 177 GLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLELAYNSFSGLI----PKALGQLRNLERLGLQSNYLTSSTS-ELM 247 (385)
Q Consensus 177 ~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 247 (385)
.-..|+.|++++|.+.+ .+.+.+...+.|++|+++.|.+.+.. .+.+...+.|+.|+++++.....+. +..
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 34455566665555542 23344555566777777777665432 2344555667777776543311222 223
Q ss_pred hhhHhhhcccCceEEEccCC
Q 043347 248 SLFSALVNCKSLKVIVLAEN 267 (385)
Q Consensus 248 ~~~~~~~~~~~L~~L~l~~~ 267 (385)
++...+...+.|+.|+++.+
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHhCCCcCeEeccCC
Confidence 34556666777777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.33 E-value=0.0092 Score=43.59 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=38.7
Q ss_pred EEEeeccccC-CCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347 286 EIYMYKCNIH-GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE 343 (385)
Q Consensus 286 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 343 (385)
.++-++..++ ..+|..+ .++|+.|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444444443 1344332 247899999999998666667788889999999998775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.58 E-value=0.023 Score=41.43 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=13.0
Q ss_pred ccEEEccCCcccCcCCCCccCCCCCcEEecccc
Q 043347 59 LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFN 91 (385)
Q Consensus 59 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 91 (385)
|++|+|++|.++......|..+++|+.|++++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444443333333333344444444333
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.23 E-value=1.5 Score=29.91 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=26.0
Q ss_pred CCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc
Q 043347 47 SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF 90 (385)
Q Consensus 47 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 90 (385)
.+...+|.+|..|+.+.|..+ ++.....+|..|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 555666666666666666554 3445555666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.65 E-value=6.7 Score=26.62 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=29.4
Q ss_pred CcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347 67 NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF 114 (385)
Q Consensus 67 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 114 (385)
..++.....+|.+|..|+.+.|..+ +......+|.++.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444455567777777777777654 2334455677777777777755
Done!