BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043350
(1133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 160 bits (404), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 166/357 (46%), Gaps = 54/357 (15%)
Query: 565 VYLRRDDVRILVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAA 624
+Y + R GT+NV G++ E L WL + + VG QE+++ +
Sbjct: 1 MYTYIQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------S 50
Query: 625 KETVGLEGSAIGQWWQDTIGKALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAA 684
KE + + W + + L + ++ +L G+++ +V++ ++ +V+A
Sbjct: 51 KEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAE 110
Query: 685 AVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNMVFSRS 744
V G +GNKGGV +R + ++ +IC VN HLAAH+E RRN DY I M F +
Sbjct: 111 TVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQP 170
Query: 745 TSTLNSASAGVSTAVNMMKXXXXXXXXXXXXXKPDLAEADMVIFFGDFNYRLFGISYDEA 804
+L + ++ D++++ GD NYR+ + ++
Sbjct: 171 DPSLPPLT---------------------------ISNHDVILWLGDLNYRIEELDVEKV 203
Query: 805 RDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYDSGEKK 864
+ + ++ F L DQL+ ++ A VF+G E + F PTYK++ G +D+ EK
Sbjct: 204 KKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD---TGSDDWDTSEKC 260
Query: 865 RIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKI 921
R PAWCDRI+++ T +S Y + M + SDHKPV F + +
Sbjct: 261 RAPAWCDRILWKGKNITQLS--------------YQSHMALKTSDHKPVSSVFDIGV 303
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 166/355 (46%), Gaps = 54/355 (15%)
Query: 571 DVRILVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVGL 630
+ R GT+NV G++ E L WL + + VG QE+++ +KE
Sbjct: 4 NFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------SKEAFFF 53
Query: 631 EGSAIGQWWQDTIGKALDEGTTFERMGSRQLAGLLISFWVRKNLRTHVGDVDAAAVPCGF 690
+ + W + + L + ++ +L G+++ +V++ ++ +V+A V G
Sbjct: 54 HDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGI 113
Query: 691 GRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNMVFSRSTSTLNS 750
+GNKGGV +R + ++ +IC VN HLAAH+E RRN DY I M F + +L
Sbjct: 114 MGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPP 173
Query: 751 ASAGVSTAVNMMKXXXXXXXXXXXXXKPDLAEADMVIFFGDFNYRLFGISYDEARDFVSQ 810
+ ++ D++++ GD NYR+ + ++ + + +
Sbjct: 174 LT---------------------------ISNHDVILWLGDLNYRIEELDVEKVKKLIEE 206
Query: 811 RCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHRPGLAGYDSGEKKRIPAWC 870
+ F L DQL+ ++ A VF+G E + F PTYK++ G +D+ EK R PAWC
Sbjct: 207 KDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD---TGSDDWDTSEKCRAPAWC 263
Query: 871 DRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIAHVD 925
DRI+++ T +S Y + M + SDHKPV F + + V+
Sbjct: 264 DRILWKGKNITQLS--------------YQSHMALKTSDHKPVSSVFDIGVRVVN 304
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 177/401 (44%), Gaps = 67/401 (16%)
Query: 550 PLDNIIRSEIAAKEAVYLRRDDVRILVGTWNVGQGRASHESLLSWLGSVSSDVG-IVAVG 608
P+ + E+ +E + +V+I V ++N+ G ++ L +WL ++ + I VG
Sbjct: 3 PIHEYVNHELRKRENEFSEHKNVKIFVASYNLN-GCSATTKLENWLFPENTPLADIYVVG 61
Query: 609 LQEVEMGAGFLAMSAAKETVGLEGSAIGQWWQDTIGKALD----EGTTFERMGSRQLAGL 664
QE+ + + V A + W+ + + L+ G + ++ S QL G
Sbjct: 62 FQEI--------VQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Query: 665 LISFWVRKNLRTHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEA 724
+ + +++ + +V+ G G GNKG V +R D +CF+ HLAA
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 725 VNRRNADYDHIYRNMVFSRSTSTLNSASAGVSTAVNMMKXXXXXXXXXXXXXKPDLAEAD 784
+ R+ DY I + F R S N D
Sbjct: 174 YDERDHDYRTIASGLRFRRGRSIFNH---------------------------------D 200
Query: 785 MVIFFGDFNYRLFGISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPP 844
V++FGDFNYR+ ++Y+E ++Q +L E DQL +M GKVF E I FPP
Sbjct: 201 YVVWFGDFNYRI-SLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPP 259
Query: 845 TYKFERHRPGLAGYDSGEKKRIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMD 904
TYKF+ G YD+ +K R+PAW DRI+YR P S S+ LY
Sbjct: 260 TYKFD---IGTDIYDTSDKHRVPAWTDRILYR-GELVPHS--------YQSVPLY----- 302
Query: 905 VTESDHKPVHCKFHVKIAHVDRSERRRVFGEILKNNENTIK 945
SDH+P++ + I VDR +++ +F E+ + ++
Sbjct: 303 --YSDHRPIYATYEANIVKVDREKKKILFEELYNQRKQEVR 341
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 150/360 (41%), Gaps = 58/360 (16%)
Query: 570 DDVRILVGTWNVGQGRASHESLLSWLGSVSSDVGIVAVGLQEVEMGAGFLAMSAAKETVG 629
D + + +GTWN+G +++ SW S + L EV + + G
Sbjct: 6 DMISVFIGTWNMGS-VPPPKNVTSWFTSKG-----LGKTLDEVTV-----TIPHDIYVFG 54
Query: 630 LEGSAIG-QWWQDTIGKALDEGTTFER--MGSRQLAGLLISFWVRKNLRTHVGDVDAAAV 686
+ +++G + W D + L E T + + + L + ++ V+ + V ++V
Sbjct: 55 TQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSV 114
Query: 687 PCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYRNMVFSRSTS 746
G +GNKG VG+ + FVNCHL + E RRN +Y I R + S
Sbjct: 115 KTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILR--LLSLGDR 172
Query: 747 TLNSASAGVSTAVNMMKXXXXXXXXXXXXXKPDLAEADMVIFFGDFNYRLFGISYDEARD 806
LN+ + + +FGD NYRL + E +
Sbjct: 173 QLNAFDISLRFT--------------------------HLFWFGDLNYRL-DMDIQEILN 205
Query: 807 FVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFER-HRPGLAGYD---SGE 862
++S++ F+ L DQL E + KVF E I FPPTY++ER R A + +G
Sbjct: 206 YISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGV 265
Query: 863 KKRIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKPVHCKFHVKIA 922
+ +P+WCDRI+++ T + S C D+ SDH PV F V +
Sbjct: 266 RTNVPSWCDRILWKSYPETHIICNSYGC-----------TDDIVTSDHSPVFGTFEVGVT 314
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 151/369 (40%), Gaps = 67/369 (18%)
Query: 560 AAKEAVYLRRDDVRILVGTWNVGQGRASHESLLSWLGSVSSDVG--IVAVGLQEVEMGAG 617
A + A Y +V + V TWN+ + SL +L +D + +G+QE
Sbjct: 14 ADELARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQE------ 67
Query: 618 FLAMSAAKETVGLEGSAIGQWWQDTIGKALDEGTTFERMGSRQLAGLLISFWVRKNLRTH 677
G + + W+ + + L G + + S L +S ++R++L
Sbjct: 68 --------------GCSDRREWETRLQETL--GPHYVLLSSAAHGVLYMSLFIRRDLIWF 111
Query: 678 VGDVDAAAVPCGFGRAIGNKGGVGLRIRVYDRTICFVNCHLAAHLEAVNRRNADYDHIYR 737
+V+ + V I KG +G+ + + F+ H + V R DY +
Sbjct: 112 CSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQ 171
Query: 738 NMVFSRS---TSTLNSASAGVSTAVNMMKXXXXXXXXXXXXXKPDLAEADMVIFFGDFNY 794
+V R+ T+ S++A V+T D V +FGDFN+
Sbjct: 172 ALVLPRNVPDTNPYRSSAADVTT------------------------RFDEVFWFGDFNF 207
Query: 795 RLFGISYDEARDFVSQRCFD--WLREKDQLRAEMKAGKVFQGMREAIIRFPPTYKFERHR 852
RL G D L + DQL EM+ G +F+G +E I F P+YKF+
Sbjct: 208 RLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFD--- 264
Query: 853 PGLAGYDSGEKKRIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAVMDVTESDHKP 912
G YDS K+R P++ DR++YR + CPV Y + + SDH+P
Sbjct: 265 IGKDTYDSTSKQRTPSYTDRVLYRSRHKGDI------CPVS-----YSSCPGIKTSDHRP 313
Query: 913 VHCKFHVKI 921
V+ F VK+
Sbjct: 314 VYGLFRVKV 322
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 783 ADMVIFFGDFNYRLFGISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREAIIRF 842
+D + + GD N R+ + A+ V Q D L DQL+ + K K+F G E + F
Sbjct: 163 SDFLFWIGDLNVRV-ETNATHAKSLVDQNNIDGLMAFDQLK-KAKEQKLFDGWTEPQVTF 220
Query: 843 PPTYKFERHRPGLAGYDSGEKKRIPAWCDRIIYRDSRSTPVSECSLECPVVSSILLYDAV 902
PTYKF +P YD P+W DR +Y+ + S Y+++
Sbjct: 221 KPTYKF---KPNTDEYDLSAT---PSWTDRALYKSGTGKTIQPLS-----------YNSL 263
Query: 903 MDVTESDHKPVHCKFHVKI 921
+ +++H+PV KF V +
Sbjct: 264 TNYKQTEHRPVLAKFRVTL 282
>pdb|3BIC|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase
pdb|3BIC|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase
pdb|2XIJ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin
pdb|2XIQ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin And Malonyl-Coa
pdb|2XIQ|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin And Malonyl-Coa
Length = 762
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 534 LAAHGGIRGWTFTSPSPLDNIIRSEIAAKEAVY 566
L AH GW+ T P +NI+R+ I A AV+
Sbjct: 337 LRAHCQTSGWSLTEQDPYNNIVRTAIEAMAAVF 369
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 261 HRGPVLAMIFSSQGDLWSG-----GEGGVI---KIWPWESIEKS------LSLKPEEKHM 306
H+G ++ SS+GD W GE G I + P +SI+ L K E+ +
Sbjct: 23 HKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAERQL 82
Query: 307 AALLVERSFIDLRAQVTVNGACSISSTEIKCMLSDHAR 344
+ R +R T GA S+S + M DH +
Sbjct: 83 LSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVK 120
>pdb|3M4A|A Chain A, Crystal Structure Of A Bacterial Topoisomerase Ib In
Complex With Dna Reveals A Secondary Dna Binding Site
Length = 346
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 857 GYDSGEK--KRIPAWCDRIIYRDSRSTP-VSECSLECPVVSSILLYDAVMDVTESDHKPV 913
G +S E+ K++ C + + D +TP V+ S CPV+ L V+D D++P
Sbjct: 255 GTESSERQAKKVLVDCVKFVADDLGNTPAVTRGSYICPVIFDRYLDGKVLD----DYEP- 309
Query: 914 HCKFHVKIAHVDRSERRRVFGEILKNNENTIKSMLDEYRII 954
R+ER+ E L +E +K ML+ R +
Sbjct: 310 ------------RTERQEAELEGLTRSEGALKRMLESERTL 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,401,494
Number of Sequences: 62578
Number of extensions: 1388121
Number of successful extensions: 2865
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2836
Number of HSP's gapped (non-prelim): 17
length of query: 1133
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1024
effective length of database: 8,152,335
effective search space: 8347991040
effective search space used: 8347991040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)